isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
ES_00000001	ERCC-00002	+	1045	1	FSM	ERCC-00002A	DQ459430	1045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00002_+_0_1000
ES_00000002	ERCC-00003	+	1007	1	FSM	ERCC-00003A	DQ516784	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-30	NA	0	1007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00003_+_0_1000
ES_00000003	ERCC-00004	+	507	1	FSM	ERCC-00004A	DQ516752	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	GATAAA	-39	NA	0	507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00004_+_0_500
ES_00000004	ERCC-00009	+	968	1	FSM	ERCC-00009A	DQ668364	968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00009_+_0_1000
ES_00000021	ERCC-00042	+	1007	1	FSM	ERCC-00042A	DQ516783	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAACA	-5	NA	0	1007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00042_+_0_1000
ES_00000024	ERCC-00046	+	506	1	FSM	ERCC-00046A	DQ516748	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00046_+_0_500
ES_00000031	ERCC-00060	+	506	1	FSM	ERCC-00060A	DQ516763	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00060_+_0_500
ES_00000038	ERCC-00074	+	506	1	FSM	ERCC-00074A	DQ516754	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00074_+_0_500
ES_00000047	ERCC-00095	+	513	1	FSM	ERCC-00095A	DQ516759	513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00095_+_0_500
ES_00000048	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00096_+_0_1100
ES_00000053	ERCC-00108	+	1005	1	FSM	ERCC-00108A	DQ668365	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00108_+_0_1000
ES_00000056	ERCC-00111	+	978	1	FSM	ERCC-00111A	DQ883685	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00111_+_0_1000
ES_00000057	ERCC-00112	+	1120	1	FSM	ERCC-00112A	DQ459422	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00112_+_0_1100
ES_00000058	ERCC-00113	+	825	1	FSM	ERCC-00113A	DQ883663	825	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00113_+_0_800
ES_00000063	ERCC-00130	+	1051	1	FSM	ERCC-00130A	EF011072	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00130_+_0_1100
ES_00000064	ERCC-00131	+	755	1	FSM	ERCC-00131A	DQ855003	755	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00131_+_0_800
ES_00000066	ERCC-00136	+	1025	1	FSM	ERCC-00136A	EF011063	1025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00136_+_0_1000
ES_00000071	ERCC-00145	+	1024	1	FSM	ERCC-00145A	DQ875386	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00145_+_0_1000
ES_00000079	ERCC-00160	+	727	1	FSM	ERCC-00160A	DQ883658	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00160_+_0_700
ES_00000080	ERCC-00162	+	507	1	FSM	ERCC-00162A	DQ516750	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00162_+_0_500
ES_00000085	ERCC-00171	+	489	1	FSM	ERCC-00171A	DQ854994	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_ERCC-00171_+_0_500
ES_00000086	SIRV1	+	739	3	FSM	SIRV1B	SIRV108	702	3	0	-37	0	0	multi-exon	FALSE	canonical	3	89	junction_1	13	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10582	11643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV1_+_10792_10897_11188_11403
ES_00000087	SIRV1	+	464	3	FSM	SIRV1B	SIRV109	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10711	11643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV1_+_10792_10882_11058_11434
ES_00000090	SIRV1	-	1566	6	FSM	SIRV1A	SIRV101	1561	6	0	-5	0	5	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCATACTTCCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	10786	995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
ES_00000091	SIRV1	-	978	3	FSM	SIRV1A	SIRV106	973	3	0	-5	0	5	multi-exon	FALSE	canonical	2	497	junction_2	204	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCATACTTCCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	10786	995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV1_-_1485_7552_7809_10553
ES_00000092	SIRV1	-	1368	6	FSM	SIRV1A	SIRV103	1363	6	0	-5	0	5	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCATACTTCCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	10791	995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
ES_00000093	SIRV1	-	1360	5	NIC	SIRV1A	novel	1363	6	NA	NA	-61	0	intron_retention	FALSE	canonical	3	1304	junction_4	1900.97230056095	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10701	1000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV1_-_1485_6337_6814_7552_7815_10282_10367_10647
ES_00000094	SIRV1	-	670	5	FSM	SIRV1A	SIRV105	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10640	6449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
ES_00000097	SIRV1	-	779	4	NIC	SIRV1A	novel	670	5	NA	NA	-22	0	intron_retention	FALSE	canonical	3	1547	junction_3	2077.98449357919	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10662	6449	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV1_-_6814_7552_7815_10282_10367_10593
ES_00000098	SIRV10001	+	9941	1	FSM	SIRV10001A	SIRV10001	9941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	9941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV10001_+_0_9900
ES_00000099	SIRV10002	+	10001	1	FSM	SIRV10002A	SIRV10002	10001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	10001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV10002_+_0_10000
ES_00000100	SIRV10003	+	9970	1	FSM	SIRV10003A	SIRV10003	9970	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	9970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV10003_+_0_10000
ES_00000101	SIRV12001	+	12029	1	FSM	SIRV12001A	SIRV12001	12029	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	12029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV12001_+_0_12000
ES_00000102	SIRV12002	+	11999	1	FSM	SIRV12002A	SIRV12002	11999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAGAAA	-36	NA	0	11999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV12002_+_0_12000
ES_00000104	SIRV2	-	2059	11	FSM	SIRV2A	SIRV201	2051	11	0	-8	0	8	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGGCATGCGTACAATTT	NA	False	NA	NA	False	NA	NA	NA	5907	992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
ES_00000105	SIRV2	-	1971	11	FSM	SIRV2A	SIRV202	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5911	1035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
ES_00000106	SIRV2	-	741	3	FSM	SIRV2A	SIRV204	740	3	0	-1	0	1	multi-exon	FALSE	canonical	3	2423	junction_1	198	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTATCCTATATCGGAA	NA	False	NA	NA	False	NA	NA	NA	4732	3642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV2_-_3826_3966_4480_4687
ES_00000107	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
ES_00000108	SIRV2	-	2199	10	NIC	SIRV2A	novel	1971	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	173	junction_6	941.814560657599	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5895	1035	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4480_4687_4801_5788
ES_00000110	SIRV3	+	1828	2	FSM	SIRV3A	SIRV302	1807	2	-21	0	-2	0	multi-exon	FALSE	canonical	3	834	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1942	7822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_2006_6057
ES_00000112	SIRV3	+	2375	3	FSM	SIRV3A	SIRV306	2373	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1942	8292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_2006_4003_4081_6057
ES_00000114	SIRV3	+	1104	8	FSM	SIRV3A	SIRV304	1083	8	-21	0	-2	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1942	8937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
ES_00000115	SIRV3	+	2469	5	FSM	SIRV3A	SIRV301	2467	5	-2	0	-2	0	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1942	8939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
ES_00000116	SIRV3	+	800	5	FSM	SIRV3A	SIRV307	779	5	-21	0	-2	0	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1942	8939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
ES_00000117	SIRV3	+	1857	6	NIC	SIRV3A	novel	1083	8	NA	NA	-1	-173	intron_retention	FALSE	canonical	3	1234	junction_4	819.043246721442	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAATTTCATGGACACAG	NA	False	NA	NA	False	AATAAA	-32	NA	1943	8764	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV3_+_2006_4003_4081_4568_4780_6570_7989_8127_8208_8755
ES_00000119	SIRV3	+	436	3	FSM	SIRV3A	SIRV305	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4003	6718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_4081_4568_4780_6570
ES_00000120	SIRV3	-	482	3	FSM	SIRV3B	SIRV308	479	3	0	-3	0	3	multi-exon	FALSE	canonical	3	5391	junction_1	17	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTGTATGGCGGACAT	NA	False	NA	NA	False	NA	NA	NA	1982	997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_-_1168_1532_1765_1902
ES_00000121	SIRV3	-	595	3	FSM	SIRV3C	SIRV310	589	3	0	-6	0	6	multi-exon	FALSE	canonical	3	1245	junction_2	66	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTGGGTACTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	9914	8753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_-_8967_9189_9325_9667
ES_00000122	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_-_8976_9189_9299_9434
ES_00000123	SIRV3	+	498	4	NIC	SIRV3A	novel	436	3	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	1609	junction_3	765.151981998057	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	1943	6718	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV3_+_2006_4003_4081_4568_4780_6570
ES_00000124	SIRV3	+	2038	3	FSM	SIRV3A	SIRV303	2018	3	-20	0	-1	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1943	7822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV3_+_2006_4568_4780_6057
ES_00000125	SIRV3	+	2104	4	ISM	SIRV3A	SIRV307	779	5	-20	1117	-1	0	5prime_fragment	FALSE	canonical	3	1417	junction_3	833.260396808158	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1943	7822	ES_long_short	iso_detect_ref_jhu_pertea	ISM_SIRV3_+_2006_4003_4081_4574_4775_6057
ES_00000128	SIRV4	+	1572	3	FSM	SIRV4C	SIRV409	1567	3	-5	0	-5	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	995	3403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_+_1347_1678_1886_2389
ES_00000129	SIRV4	+	951	2	FSM	SIRV4C	SIRV410	950	2	-1	0	-1	0	multi-exon	FALSE	canonical	3	1621	junction_1	0	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATATGTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	1454	2771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_+_1886_2251
ES_00000130	SIRV4	-	635	2	FSM	SIRV4B	SIRV406	617	2	0	-18	0	18	multi-exon	FALSE	canonical	3	2584	junction_1	0	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAACTTCAAGCTGTAGTA	NA	False	NA	NA	False	TTTAAA	-9	NA	5158	3619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_-_4104_5007
ES_00000131	SIRV4	-	594	4	FSM	SIRV4A	SIRV404	592	4	0	-2	0	2	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATTTAGAGCGTATG	NA	False	NA	NA	False	NA	NA	NA	14623	8320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
ES_00000132	SIRV4	-	672	4	FSM	SIRV4A	SIRV403	670	4	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATTTAGAGCGTATG	NA	False	NA	NA	False	NA	NA	NA	15122	8320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
ES_00000133	SIRV4	-	575	5	FSM	SIRV4A	SIRV408	570	5	-2	-3	-2	2	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATTTAGAGCGTATG	NA	False	NA	NA	False	NA	NA	NA	15124	8320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
ES_00000134	SIRV4	-	626	2	FSM	SIRV4A	SIRV405	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	7498	junction_1	0	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCTTTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	13937	8629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4_-_8991_13672
ES_00000137	SIRV4001	+	3997	1	FSM	SIRV4001A	SIRV4001	3997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4001_+_0_4000
ES_00000138	SIRV4002	+	3999	1	FSM	SIRV4002A	SIRV4002	3999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4002_+_0_4000
ES_00000139	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-45	NA	0	4001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV4003_+_0_4000
ES_00000140	SIRV5	+	562	2	FSM	SIRV5A	SIRV506	552	2	-10	0	-2	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	998	2398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1987
ES_00000141	SIRV5	+	556	2	FSM	SIRV5A	SIRV511	546	2	-10	0	-2	0	multi-exon	FALSE	canonical	0	0	junction_1	0	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	998	2398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1144_1987
ES_00000142	SIRV5	+	2005	18	FSM	SIRV5A	SIRV502	1984	18	-21	0	-2	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	998	10989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
ES_00000143	SIRV5	+	2031	16	FSM	SIRV5A	SIRV505	2029	16	-2	0	-2	0	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	998	10991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ES_00000144	SIRV5	+	2095	17	FSM	SIRV5A	SIRV508	2085	17	-10	0	-2	0	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	998	10991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ES_00000145	SIRV5	+	2383	19	NIC	SIRV5A	novel	2474	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3595.00631878426	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	998	11866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV5_+_1144_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11311
ES_00000146	SIRV5	+	533	6	FSM	SIRV5A	SIRV507	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1027	3598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
ES_00000147	SIRV5	+	4242	18	FSM	SIRV5A	SIRV510	2474	18	-29	-1739	-1	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	999	13606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
ES_00000148	SIRV5	+	1890	17	FSM	SIRV5A	SIRV501	1890	17	0	0	0	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1056	10991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
ES_00000149	SIRV5	+	2768	17	NIC	SIRV5A	novel	2474	18	NA	NA	0	0	intron_retention	FALSE	canonical	3	1532	junction_16	2639.87692584214	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	1056	11866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11133
ES_00000150	SIRV5	+	526	3	FSM	SIRV5A	SIRV503	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_2	5146.5	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCTTGCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	8201	11142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_8586_10858_10992_11133
ES_00000151	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8315	11866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
ES_00000152	SIRV5	+	2473	1	FSM	SIRV5A	SIRV504	2473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11133	13606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_+_11100_13600
ES_00000153	SIRV5	-	229	1	FSM	SIRV5B	SIRV512	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTAGACCTTTA	NA	False	NA	NA	False	AATATA	-23	NA	2406	2177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV5_-_2200_2400
ES_00000154	SIRV5	+	2153	17	NIC	SIRV5A	novel	2085	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	2297	junction_10	2805.64024486279	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	1000	10989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
ES_00000155	SIRV5	+	2067	18	NIC	SIRV5A	novel	1984	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	681	junction_4	3336.57255921501	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV5_+_1150_1925_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
ES_00000156	SIRV5	+	2528	17	NIC	SIRV5A	novel	2474	18	NA	NA	0	0	intron_retention	FALSE	canonical	3	1024	junction_16	2662.85700658147	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	1056	11866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11311
ES_00000157	SIRV5	+	565	2	ISM	SIRV5A	SIRV507	533	6	30	1200	1	0	intron_retention	FALSE	canonical	3	3871	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1057	2398	ES_long_short	iso_detect_ref_jhu_pertea	ISM_SIRV5_+_1150_1925
ES_00000159	SIRV5	+	2706	17	NIC	SIRV5A	novel	2474	18	NA	NA	0	0	intron_retention	FALSE	canonical	3	1532	junction_16	2578.60209221974	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	1056	11866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11133
ES_00000160	SIRV6	+	624	4	FSM	SIRV6A	SIRV609	485	4	-139	0	-2	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	998	2120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
ES_00000161	SIRV6	+	1713	9	FSM	SIRV6A	SIRV605	1088	9	-132	-493	-2	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	998	11824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
ES_00000162	SIRV6	+	1437	9	FSM	SIRV6A	SIRV601	1435	9	-2	0	-2	0	multi-exon	FALSE	canonical	3	2056	junction_3	7596.8547757855	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACCGGGAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	998	11826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
ES_00000163	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
ES_00000165	SIRV6	+	1537	10	FSM	SIRV6A	SIRV604	1537	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	9140.21704229429	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACTTAGTTCAATCTT	NA	False	NA	NA	False	NA	NA	NA	1087	11837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
ES_00000166	SIRV6	+	580	4	FSM	SIRV6A	SIRV607	574	4	-6	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1124	2540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
ES_00000167	SIRV6	+	691	8	FSM	SIRV6A	SIRV602	574	8	-126	9	-2	0	multi-exon	TRUE	canonical	3	8561	junction_3	5767.41567350754	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	998	11270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
ES_00000168	SIRV6	+	456	3	FSM	SIRV6A	SIRV611	454	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1301	1950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_1382_1468_1535_1640
ES_00000169	SIRV6	+	547	4	FSM	SIRV6A	SIRV606	545	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	12902	junction_1	3352.72986617705	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2283	10788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724
ES_00000170	SIRV6	+	533	4	FSM	SIRV6A	SIRV616	531	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2283	10788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
ES_00000171	SIRV6	+	1163	5	FSM	SIRV6A	SIRV610	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2472	11690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
ES_00000172	SIRV6	+	459	5	FSM	SIRV6A	SIRV614	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGACTGTATCGGAG	NA	False	NA	NA	False	AAAAAG	-17	NA	2516	10815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
ES_00000173	SIRV6	+	379	4	FSM	SIRV6A	SIRV608	377	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3021	11270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
ES_00000174	SIRV6	+	1395	6	FSM	SIRV6A	SIRV613	1311	6	-84	0	-2	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3021	11824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
ES_00000175	SIRV6	+	1970	1	FSM	SIRV6A	SIRV603	1969	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	385	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8998	10968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_9000_11000
ES_00000176	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6_+_10819_11031_11109_11205
ES_00000179	SIRV6	+	1206	10	NIC	SIRV6A	novel	1528	10	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	8930.5814390501	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1087	11279	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV6_+_1187_1468_1736_1845_2027_2470_2621_2740_2829_3106_3165_7805_7924_10724_10819_11031_11109_11205
ES_00000180	SIRV6	+	714	2	ISM	SIRV6A	SIRV609	485	4	-13	0	0	0	intron_retention	FALSE	canonical	3	25662	junction_1	0	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1124	2120	ES_long_short	iso_detect_ref_jhu_pertea	ISM_SIRV6_+_1187_1468
ES_00000181	SIRV6	+	1390	7	NIC	SIRV6A	novel	1435	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	2976	junction_3	8012.15380253996	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	2284	11824	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724_10819_11031_11109_11205
ES_00000182	SIRV6001	+	6000	1	FSM	SIRV6001A	SIRV6001	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6001_+_0_6000
ES_00000183	SIRV6002	+	6000	1	FSM	SIRV6002A	SIRV6002	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6002_+_0_6000
ES_00000184	SIRV6003	+	6000	1	FSM	SIRV6003A	SIRV6003	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV6003_+_0_6000
ES_00000185	SIRV7	-	2250	6	FSM	SIRV7A	SIRV702	2247	6	0	-3	0	3	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAATATGAATCAACTCT	NA	False	NA	NA	False	TATAAA	-25	NA	114916	997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
ES_00000186	SIRV7	-	2501	5	FSM	SIRV7A	SIRV703	2498	5	0	-3	0	3	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAATATGAATCAACTCT	NA	False	NA	NA	False	TATAAA	-25	NA	147918	997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
ES_00000187	SIRV7	-	2470	5	FSM	SIRV7A	SIRV701	2462	5	-2	-6	0	3	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAATATGAATCAACTCT	NA	False	NA	NA	False	TATAAA	-25	NA	147925	997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
ES_00000188	SIRV7	-	430	3	FSM	SIRV7A	SIRV704	428	3	0	-2	0	2	multi-exon	FALSE	canonical	3	4944	junction_1	1233	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCGTATTTGCTGCTTG	NA	False	NA	NA	False	ATTAAA	-35	NA	114738	55847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV7_-_56098_78841_78964_114680
ES_00000189	SIRV7	-	1028	4	NIC	SIRV7A	novel	949	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	4927	junction_3	1166.51113248962	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCGTATTTGCTGCTT	NA	False	NA	NA	False	ATTAAA	-34	NA	147957	55848	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV7_-_56098_78841_78964_114680_114989_147608
ES_00000190	SIRV7	-	1106	6	NIC	SIRV7A	novel	889	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1852.23123826373	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCGTATTTGCTGCTT	NA	False	NA	NA	False	ATTAAA	-34	NA	147957	55848	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114989_147608
ES_00000191	SIRV7	-	1079	6	FSM	SIRV7A	SIRV708	889	6	-1	-189	-1	1	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCGTATTTGCTGCTT	NA	False	NA	NA	False	ATTAAA	-34	NA	147958	55848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
ES_00000192	SIRV7	-	949	5	FSM	SIRV7A	SIRV706	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
ES_00000193	SIRV7	-	2473	5	NIC	SIRV7A	novel	2462	5	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	1923	junction_2	699.435844091508	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTAATATGAATCAACTC	NA	False	NA	NA	False	TATAAA	-24	NA	147957	998	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV7_-_2676_2993_3112_43028_43078_114680_114961_147608
ES_00000194	SIRV7	-	810	5	NIC	SIRV7A	novel	889	6	NA	NA	66	0	intron_retention	FALSE	canonical	0	0	junction_3	1736.72714825905	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147852	56031	ES_long_short	iso_detect_ref_jhu_pertea	NIC_SIRV7_-_56098_70883_70988_78841_78964_114686_114961_147608
ES_00000196	SIRV8001	+	8001	1	FSM	SIRV8001A	SIRV8001	8001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV8001_+_0_8000
ES_00000197	SIRV8002	+	8000	1	FSM	SIRV8002A	SIRV8002	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV8002_+_0_8000
ES_00000198	SIRV8003	+	8000	1	FSM	SIRV8003A	SIRV8003	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_SIRV8003_+_0_8000
ES_00000202	chr1	+	2763	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	-256	0	-221	0	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4877789	4916962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
ES_00000203	chr1	+	2661	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	-344	-1387	-221	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4877789	4916962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
ES_00000207	chr1	+	970	5	FSM	ENSMUSG00000033793.13	ENSMUST00000194676.6	970	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	193.830305937952	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATTTTGAATTGATCAC	NA	False	NA	NA	False	NA	NA	NA	5153332	5165951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_5153849_5154639_5154787_5159231_5159335_5163585_5163676_5165837
ES_00000208	chr1	+	1811	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATATAATTAAAGGATTCT	NA	False	NA	-12	True	NA	NA	NA	5153376	5232642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ES_00000210	chr1	+	5987	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	4	24766	4	624	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGTTTCACATGATGC	NA	False	NA	NA	False	AATAAA	-25	NA	6284872	6322106	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
ES_00000220	chr1	+	1621	11	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	3	-163	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	29.8410790689613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCTGTTTCATAAAAGC	NA	False	NA	NA	False	AATAAA	-23	NA	9618282	9646963	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_9618377_9623147_9623202_9623542_9623698_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ES_00000222	chr1	+	2079	14	FSM	ENSMUSG00000025911.15	ENSMUST00000144177.8	3239	14	109	1051	2	18	multi-exon	FALSE	canonical	0	0	junction_4	25.1132346823944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTGAGTATTTTATGCT	NA	False	NA	NA	False	AATAAA	-16	NA	9618281	9647144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_9618377_9620131_9620170_9621941_9621983_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ES_00000224	chr1	+	979	1	FSM	ENSMUSG00000081441.4	ENSMUST00000121942.2	1102	1	513	-390	513	390	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	9645285	9646264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_9645300_9646300
ES_00000227	chr1	+	3826	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	-5	-1093	-5	101	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCCAGCCTGGCTTCAAA	9934	False	NA	NA	False	NA	NA	NA	9918616	9971171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ES_00000228	chr1	+	2554	15	FSM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	-1	0	-1	0	multi-exon	TRUE	canonical	2	3	junction_12	9.43857694220254	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGGTAAATGTATGATT	NA	False	NA	NA	False	NA	NA	NA	9978861	10011179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226_10002407_10004147_10004291_10007220_10007331_10010602
ES_00000233	chr1	+	4355	30	FSM	ENSMUSG00000056763.17	ENSMUST00000071087.12	4355	30	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	28.6386316840114	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	4	True	AATAAA	-17	NA	10108441	10206993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ES_00000235	chr1	+	4426	30	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	2	91	junction_2	22.942776355976	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	4	True	AATAAA	-17	NA	10109905	10206993	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ES_00000237	chr1	+	2530	7	FSM	ENSMUSG00000056763.17	ENSMUST00000119714.8	1268	7	-112	-1150	-94	-81	multi-exon	FALSE	canonical	2	91	junction_2	18.4157239577729	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTTATGATCTCCATT	NA	False	NA	NA	False	NA	NA	NA	10109897	10138477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650
ES_00000253	chr1	+	5603	22	FSM	ENSMUSG00000016918.16	ENSMUST00000088585.10	4630	22	-158	-815	-88	0	multi-exon	FALSE	canonical	3	16	junction_1	8.51675685882192	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCGTTTCAGAGAAATGA	NA	False	NA	NA	False	AATAAA	-17	NA	12788594	12931416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_12789008_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ES_00000257	chr1	+	2268	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	False	NA	NA	False	AATAAA	-24	NA	15875869	15914276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ES_00000260	chr1	+	1745	3	FSM	ENSMUSG00000025940.7	ENSMUST00000177501.2	1636	3	-24	-85	-24	5	multi-exon	FALSE	canonical	3	53	junction_1	240	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGTTTGCCTCCACAA	NA	False	NA	27	True	ATTAAA	-17	NA	16735406	16748504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_16735730_16737888_16737998_16747191
ES_00000261	chr1	+	1712	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	-3	1	0	-1	multi-exon	FALSE	canonical	3	512	junction_1	10.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGTGTTTTGTTTGCCT	NA	False	NA	21	True	ATTAAA	-11	NA	16735430	16748498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_16735730_16737891_16737998_16747191
ES_00000268	chr1	+	1261	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	35.5984550226551	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTCTCATTCATTTC	NA	False	NA	14	True	AATAAA	-14	NA	21288885	21300388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299631
ES_00000271	chr1	+	1053	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3302	192	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21327046	21335437	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ES_00000272	chr1	+	1081	5	ISM	ENSMUSG00000025934.16	ENSMUST00000121676.8	894	8	16540	-259	3626	259	3prime_fragment	FALSE	canonical	3	69	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATTCTGGTTGATGCAA	NA	False	NA	81	True	NA	NA	NA	21327370	21335504	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ES_00000282	chr1	+	4330	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	-8	0	0	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	33758967	33781645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ES_00000289	chr1	+	14861	63	NIC	ENSMUSG00000026131.21	novel	23201	103	NA	NA	13160	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	46.3246248088818	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTATTTGAAATGA	3228	False	NA	24	True	AATAAA	-25	NA	34231146	34347742	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_34232345_34232472_34232623_34233085_34233302_34233595_34233746_34234908_34235143_34236281_34236435_34237598_34237833_34238372_34238640_34239950_34240497_34241525_34241703_34247634_34247759_34250234_34250444_34251302_34251621_34251982_34252150_34253614_34253772_34254566_34254694_34256890_34256954_34257415_34257658_34258476_34258607_34262884_34263085_34264589_34265086_34266855_34268328_34281699_34281862_34283424_34283596_34286729_34286897_34288559_34288720_34288884_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ES_00000297	chr1	+	4979	7	FSM	ENSMUSG00000026123.12	ENSMUST00000156687.8	5176	7	0	197	0	-197	multi-exon	FALSE	canonical	3	235	junction_4	21.2733531808118	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCGGTGGGCAGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	34889056	34912840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380
ES_00000300	chr1	+	4647	1	FSM	ENSMUSG00000045216.8	ENSMUST00000194670.2	3291	1	110	-1466	110	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGCTGTGGTCTGTGG	8862	False	NA	20	True	AATAAA	-15	NA	36140880	36145527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36140900_36145500
ES_00000311	chr1	+	1254	6	FSM	ENSMUSG00000026117.11	ENSMUST00000190128.2	1338	6	93	-9	93	6	multi-exon	FALSE	canonical	3	25	junction_2	6.93974062915899	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCATCTTCCCTCGACCA	NA	False	NA	10	True	AATAAA	-23	NA	36818157	36821905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
ES_00000320	chr1	+	1085	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	9	0	9	0	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	37469228	37478065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ES_00000321	chr1	+	1301	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	-22	135	9	2	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTTTATTTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	37469228	37478070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ES_00000329	chr1	+	487	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGGTTTGGTTTTCC	NA	False	NA	24	True	AATAAA	-13	NA	39407009	39410445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ES_00000330	chr1	+	630	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	25	True	AATAAA	-14	NA	39407009	39410446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
ES_00000331	chr1	+	356	4	FSM	ENSMUSG00000073702.12	ENSMUST00000195123.6	356	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5182.47514867816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407229	39410447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39407337_39409094_39409221_39410089_39410148_39410382
ES_00000333	chr1	+	3162	7	FSM	ENSMUSG00000003135.16	ENSMUST00000003219.14	3162	7	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_2	52.6289421854131	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAGGAAAAAATATT	NA	False	NA	NA	False	NA	NA	NA	39574882	39585954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39575419_39576496_39576662_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
ES_00000334	chr1	+	4305	31	FSM	ENSMUSG00000026074.16	ENSMUST00000192509.6	3918	31	-387	0	-70	0	multi-exon	FALSE	canonical	0	0	junction_19	29.3285791601904	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATCAAGGCTGCATT	NA	False	NA	-16	True	NA	NA	NA	39940002	40064085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40047490_40047500_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00000336	chr1	+	3768	31	FSM	ENSMUSG00000026074.16	ENSMUST00000193682.6	3759	31	-9	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	32.2257488491562	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGAGCGAGACCTTGGA	NA	False	NA	NA	False	NA	NA	NA	39940329	40063914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40043966_40044074_40045830_40045983_40046592_40046691_40047490_40047500_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00000337	chr1	+	3969	32	FSM	ENSMUSG00000026074.16	ENSMUST00000195860.6	3960	32	-9	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	32.3828875300934	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGAGCGAGACCTTGGA	NA	False	NA	NA	False	NA	NA	NA	39940329	40063914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40040589_40040752_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40047490_40047500_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00000342	chr1	+	1418	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890392	42944842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ES_00000343	chr1	+	1009	7	FSM	ENSMUSG00000060679.15	ENSMUST00000201108.4	1009	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	264.259762775611	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	15	True	AATAAA	-17	NA	42926896	42944843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938512_42938710_42942454_42942625_42944564
ES_00000345	chr1	+	3462	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	961	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCAGGCCTGTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	43137865	43155107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
ES_00000349	chr1	+	4667	30	FSM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	-18	0	-18	0	multi-exon	FALSE	canonical	3	77	junction_23	82.0288369004111	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTATAAATAAAAGTAAATA	3286	False	NA	-21	True	NA	NA	NA	43973148	44042131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
ES_00000355	chr1	+	3570	10	FSM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	6.90857402520436	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTTTTGTGGTTCAGGC	NA	False	NA	NA	False	ATTAAA	-12	NA	44159127	44183930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ES_00000356	chr1	+	3889	15	FSM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	0	18	0	-18	multi-exon	FALSE	canonical	0	0	junction_3	30.0296622066399	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAAAAGTACATCTGTT	NA	False	NA	76	True	ATTAAA	-22	NA	44187006	44220402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218306_44218392_44219690
ES_00000357	chr1	+	3625	15	NIC	ENSMUSG00000026048.17	novel	3907	15	NA	NA	-6	-18	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	37.9583552685555	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAAAAGTACATCTGTT	NA	False	NA	76	True	ATTAAA	-22	NA	44187085	44220402	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_44187126_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218306_44218392_44219690
ES_00000361	chr1	+	2076	9	FSM	ENSMUSG00000025995.17	ENSMUST00000135662.8	2076	9	0	0	0	0	multi-exon	FALSE	canonical	3	558	junction_1	55.8720636812352	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45853837	45862779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_45853877_45855636_45855795_45856422_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
ES_00000365	chr1	+	4736	25	FSM	ENSMUSG00000026104.15	ENSMUST00000070968.14	5151	25	-3	418	-3	-416	multi-exon	FALSE	canonical	3	19	junction_12	6.79038842777054	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGCATGTCCTAGCT	3260	False	NA	NA	False	NA	NA	NA	52158610	52200606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ES_00000370	chr1	+	4338	4	FSM	ENSMUSG00000043015.16	ENSMUST00000186903.7	4338	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	4.08248290463863	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52680674	52691078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_52682396_52684419_52684646_52687908_52688086_52688864
ES_00000373	chr1	+	1925	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	-23	8	-23	-8	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGCTAAAAATGTTCCT	NA	False	NA	85	True	NA	NA	NA	53336230	53349460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
ES_00000382	chr1	+	636	5	NNC	ENSMUSG00000073676.5	novel	774	4	NA	NA	0	28734	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3492.11163731917	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	55127472	55159200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228_55130471_55159160
ES_00000383	chr1	+	633	5	NNC	ENSMUSG00000073676.5	novel	774	4	NA	NA	0	28734	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3492.11163731917	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	55127472	55159200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228_55130468_55159160
ES_00000392	chr1	+	3929	14	FSM	ENSMUSG00000038305.16	ENSMUST00000167085.8	3929	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_13	12.6939392890685	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGTCTGTAGAACCGTT	NA	False	NA	NA	False	AATAAA	-17	NA	57814019	57987553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
ES_00000394	chr1	+	3465	14	NIC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	0	-405	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	8.58855713199065	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGTTCTATGTAGCAA	NA	False	NA	NA	False	NA	NA	NA	57814075	57987148	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985229
ES_00000396	chr1	+	1650	8	FSM	ENSMUSG00000064294.13	ENSMUST00000162011.3	1568	8	-90	8	-34	-8	multi-exon	FALSE	canonical	3	19	junction_6	6.53405521487387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAATGGATGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	58152254	58178273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374
ES_00000397	chr1	+	4569	35	FSM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	0	37	0	-37	multi-exon	FALSE	canonical	3	19	junction_6	6.33501009795379	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAGAGAAACTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	58152294	58239820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
ES_00000399	chr1	+	318	2	Antisense	novelGene_ENSMUSG00000103839.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATCTTAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	58423157	58430057	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_+_58423359_58429940
ES_00000402	chr1	+	783	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	-20	0	-20	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625522	58635123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_58625830_58630248_58630409_58634807
ES_00000404	chr1	+	835	2	Fusion	ENSMUSG00000026031.16_ENSMUSG00000102719.2	novel	6572	10	NA	NA	25977	-523	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATCTCTTTGGAATTT	11	False	NA	NA	False	NA	NA	NA	58795687	58840259	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_58796468_58840204
ES_00000407	chr1	+	1330	7	FSM	ENSMUSG00000026027.14	ENSMUST00000114296.8	1348	7	17	1	17	-1	multi-exon	FALSE	canonical	3	67	junction_2	9.28110386155057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCAGCTTATGTCGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	59012697	59030670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171
ES_00000408	chr1	+	2053	11	FSM	ENSMUSG00000026027.14	ENSMUST00000123301.8	2070	11	17	0	17	0	multi-exon	FALSE	canonical	1	4	junction_7	23.192455669894	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGATGCAATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	59012697	59034156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031809_59031915_59032051_59032297_59032719_59032763_59033451
ES_00000423	chr1	+	5202	1	FSM	ENSMUSG00000073664.12	ENSMUST00000187195.2	5087	1	-126	11	87	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCTATTTGATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	60219844	60225046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_60219800_60225000
ES_00000428	chr1	+	6552	9	NNC	ENSMUSG00000026782.16	novel	5768	9	NA	NA	0	787	intron_retention	FALSE	canonical	3	27	junction_5	45.7295036054405	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTGTGTGTTCATA	NA	False	NA	6	True	AATACA	-17	NA	60448777	60521104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487239_60487362_60492762_60492922_60509824_60509999_60515898
ES_00000429	chr1	+	5768	9	FSM	ENSMUSG00000026782.16	ENSMUST00000052332.15	5768	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	24.0559244262198	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTGTCTTGTAGAATC	NA	False	NA	15	True	AATAAA	-17	NA	60448777	60520317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60509824_60509999_60515898
ES_00000436	chr1	+	681	5	FSM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	1438.5358876302	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63216451_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ES_00000437	chr1	+	1919	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	20	0	-20	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	1164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTTTTAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	63215983	63219625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ES_00000438	chr1	+	12112	3	FSM	ENSMUSG00000027520.17	ENSMUST00000029025.9	12112	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	18	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGTGTTTGTTTTTA	5943	False	NA	NA	False	AATAAA	-15	NA	63329896	63353734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63329942_63334074_63334206_63341798
ES_00000453	chr1	+	1628	11	FSM	ENSMUSG00000025949.17	ENSMUST00000188799.7	4083	11	-10	2465	0	-2465	multi-exon	FALSE	canonical	3	63	junction_9	19.2304446126448	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTGGTTTTCTAATG	NA	False	NA	NA	False	NA	NA	NA	65225841	65262811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663
ES_00000456	chr1	+	9566	42	NIC	ENSMUSG00000025949.17	novel	6641	42	NA	NA	0	-1770	combination_of_known_junctions	FALSE	canonical	3	51	junction_11	16.2957131693522	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCCACCACCGCCCGGC	NA	False	NA	NA	False	NA	NA	NA	65225841	65316084	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ES_00000457	chr1	+	11373	42	FSM	ENSMUSG00000025949.17	ENSMUST00000097707.5	6641	42	0	-4732	0	49	multi-exon	FALSE	canonical	3	51	junction_11	15.9367802178507	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTTGATCAAATCTATC	NA	False	NA	NA	False	NA	NA	NA	65225908	65317903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ES_00000463	chr1	+	2845	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	0	0	0	0	multi-exon	TRUE	canonical	3	576	junction_4	38.3577313661217	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTGCTGGCTGA	NA	False	NA	15	True	AATAAA	-15	NA	71596308	71618790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ES_00000466	chr1	+	2555	22	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	20	60636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	150.723846834319	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATGTTAAATTCAATGAAG	342	False	NA	NA	False	AATAGA	-45	NA	72346605	72494747	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866_72434109_72494718
ES_00000467	chr1	+	2556	22	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	20	60636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	150.723846834319	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATGTTAAATTCAATGAAG	342	False	NA	NA	False	AATAGA	-45	NA	72346605	72494747	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866_72434113_72494721
ES_00000470	chr1	+	3064	17	FSM	ENSMUSG00000039354.17	ENSMUST00000047615.15	3059	17	-5	0	-5	0	multi-exon	FALSE	canonical	3	73	junction_6	11.1563813017483	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622404	72672293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ES_00000472	chr1	+	689	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	-24	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACGGGTTATTTACG	NA	False	NA	-23	True	NA	NA	NA	72750448	72752755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_72750960_72751300_72751384_72752660
ES_00000474	chr1	+	420	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	6433.80716735174	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	False	NA	-2	True	AATAAA	-15	NA	72750448	72752776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_72750483_72750830_72750960_72751300_72751442_72752660
ES_00000479	chr1	+	1030	4	FSM	ENSMUSG00000039323.19	ENSMUST00000120564.2	991	4	-20	-19	-20	12	multi-exon	FALSE	canonical	3	27	junction_1	1673.33041168404	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTCTTTGGGGTGTCC	553	False	NA	30	True	AATAAA	-15	NA	72864460	72891645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_72864634_72888244_72888472_72888722_72888864_72891156
ES_00000482	chr1	+	1313	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_2	696.999605451825	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTCC	7881	False	NA	18	True	NA	NA	NA	74275708	74307147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ES_00000485	chr1	+	3020	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	-83	0	32	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324120	74392843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ES_00000487	chr1	+	2859	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	9363	False	NA	5	True	NA	NA	NA	74371768	74392845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ES_00000494	chr1	+	833	7	FSM	ENSMUSG00000026174.10	ENSMUST00000137100.2	831	7	-2	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	517.845992764473	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGAGTTCTTTCCTTTA	860	False	NA	NA	False	NA	NA	NA	74545216	74566246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74545374_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74564188_74564253_74566150
ES_00000497	chr1	+	1914	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	-24	0	-13	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCTGCCTTCTGA	1118	False	NA	NA	False	NA	NA	NA	74627434	74631602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ES_00000498	chr1	+	2938	11	FSM	ENSMUSG00000033276.19	ENSMUST00000123154.2	3016	11	78	0	78	0	multi-exon	FALSE	canonical	2	4	junction_1	5.00099990001999	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTGTGATTATCTGTA	3595	False	NA	NA	False	ATTAAA	-18	NA	74665701	74676053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74665807_74666553_74666653_74666743_74666833_74667076_74667141_74667300_74667412_74670744_74670820_74671887_74672060_74672300_74672449_74672665_74672814_74673168_74673916_74674873
ES_00000500	chr1	+	485	2	FSM	ENSMUSG00000033257.15	ENSMUST00000153636.8	485	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTTCCTGTTTGGATC	NA	False	NA	NA	False	AATAAA	-19	NA	74700975	74712414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74701049_74712002
ES_00000507	chr1	+	1331	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	-15	0	-6	0	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2026	False	NA	12	True	AGTAAA	-18	NA	75145283	75148269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ES_00000509	chr1	+	1178	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	43.344727846634	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2052	False	NA	11	True	AGTAAA	-17	NA	75145309	75148268	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ES_00000511	chr1	+	2752	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	-13	0	-4	0	multi-exon	TRUE	canonical	2	42	junction_4	25.5582124222768	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	31	False	NA	19	True	AATAAA	-15	NA	75168790	75176031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ES_00000512	chr1	+	3439	10	FSM	ENSMUSG00000026199.18	ENSMUST00000131788.9	3426	10	-13	0	-4	0	multi-exon	FALSE	canonical	3	76	junction_4	19.8891992526994	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	31	False	NA	19	True	AATAAA	-15	NA	75168790	75176031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75172357_75172444_75173026_75173157_75173314_75174287_75175021_75175120_75175289_75175423_75175510_75175707
ES_00000521	chr1	+	1877	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188290.7	1855	10	-22	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	6.24400947476761	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2237	False	NA	4	True	AATAAA	-14	NA	75213108	75222334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
ES_00000523	chr1	+	1648	8	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	1686	859	-15	-859	3prime_fragment	FALSE	canonical	3	24	junction_7	3.01695886884898	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCCCTGTCATCTTGAC	NA	False	NA	8	True	AATAAA	-19	NA	75338658	75344364	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
ES_00000525	chr1	+	1702	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	-10	0	3	0	multi-exon	FALSE	non_canonical	0	0	junction_1	88.7478310427522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412576	75419817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ES_00000526	chr1	+	1536	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	3	0	3	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412576	75419818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ES_00000527	chr1	+	828	6	FSM	ENSMUSG00000033021.17	ENSMUST00000140287.8	828	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	112.568912227133	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGGTGAGAGCAGGATGG	NA	False	NA	NA	False	NA	NA	NA	75412627	75416043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988
ES_00000530	chr1	+	4182	24	FSM	ENSMUSG00000026213.16	ENSMUST00000113553.2	4153	24	-29	0	-6	0	multi-exon	FALSE	canonical	3	37	junction_10	9.28136128468159	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGCTGACTCTGGAAGT	2734	False	NA	15	True	AATAAA	-14	NA	75498166	75513576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
ES_00000535	chr1	+	3950	16	FSM	ENSMUSG00000032883.16	ENSMUST00000035779.15	3950	16	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	98.3136477470617	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTTCAGAGTCTTGT	NA	False	NA	7	True	AATAAA	-19	NA	78635541	78685460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_78635821_78640857_78640998_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ES_00000537	chr1	+	2976	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_1	36.8929090028677	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAGAAATTTCGAA	NA	False	NA	3	True	AATAAA	-14	NA	78635599	78684684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ES_00000545	chr1	+	1652	8	NNC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	14844	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	166.378839902636	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCCAAGAGATGTAGAT	NA	False	NA	NA	False	NA	NA	NA	82702654	82744959	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305_82730107_82744933
ES_00000546	chr1	+	1632	7	NIC	ENSMUSG00000026150.15	novel	1706	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	164	junction_4	124.696520489636	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702656	82730111	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82728240_82728326_82729305
ES_00000550	chr1	+	8035	13	FSM	ENSMUSG00000026159.14	ENSMUST00000189220.7	8044	13	-23	32	-23	-32	multi-exon	FALSE	canonical	3	119	junction_11	113.067826251915	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTATCTTTATTGAGTA	NA	False	NA	NA	False	NA	NA	NA	82817180	82878871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872202_82872289_82872719
ES_00000551	chr1	+	3156	12	FSM	ENSMUSG00000026159.14	ENSMUST00000113444.8	3142	12	-14	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	136.075392326071	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTAAGTTATGAATTTTG	NA	False	NA	14	True	ATTAAA	-20	NA	82817203	82874102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82871144_82871304_82872196_82872289_82872719
ES_00000553	chr1	+	2355	13	FSM	ENSMUSG00000026159.14	ENSMUST00000186302.7	2352	13	-3	0	0	0	multi-exon	FALSE	canonical	3	369	junction_12	56.7364154078607	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTTTGTGTTCTTG	NA	False	NA	15	True	AATAAA	-15	NA	82817391	82873396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
ES_00000558	chr1	+	743	2	Genic_Genomic	ENSMUSG00000064281.8	novel	591	1	NA	NA	-25	88860	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAATGAAACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	84989809	85079285	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_84990507_85079239
ES_00000563	chr1	+	3483	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	-219	-152	13	152	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGATTTGTTTTTCTTGTT	NA	False	NA	33	True	AATAAA	-33	NA	85992121	86067025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ES_00000565	chr1	+	2160	21	FSM	ENSMUSG00000062590.14	ENSMUST00000131412.8	2160	21	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_14	12.2982722363753	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	8	True	AATAAA	-13	NA	86082536	86180211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
ES_00000570	chr1	+	1580	4	FSM	ENSMUSG00000026238.15	ENSMUST00000186255.7	768	4	-468	-344	-458	3	multi-exon	FALSE	canonical	3	33	junction_2	10628.523175347	835	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTTCTGTGTGTACTT	NA	False	NA	60	True	NA	NA	NA	86453989	86458437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86454673_86456894_86456967_86457452_86457527_86457686
ES_00000572	chr1	+	641	4	FSM	ENSMUSG00000026240.13	ENSMUST00000149542.2	630	4	-11	0	-11	0	multi-exon	FALSE	canonical	2	4	junction_2	3.55902608401044	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTATGTTTTTGGAGA	6030	False	NA	NA	False	NA	NA	NA	86510648	86517015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86510819_86514737_86514958_86515068_86515190_86516885
ES_00000577	chr1	+	3275	22	FSM	ENSMUSG00000053333.16	ENSMUST00000168237.8	3154	22	-120	-1	-109	1	multi-exon	FALSE	canonical	3	10	junction_6	26.8303649010897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTGTAGATGCCATGG	NA	False	NA	16	True	AATAAA	-17	NA	86631420	86977818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86719137_86719180_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
ES_00000579	chr1	+	5672	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113232.8	1125	6	-21	-4526	-21	2277	multi-exon	FALSE	canonical	3	965	junction_1	545.938677875089	6696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACGTACATTGCCTAGT	NA	False	NA	NA	False	AATAAA	-33	NA	87141614	87158855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
ES_00000580	chr1	+	1828	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	-21	0	-21	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGTTGTCTGAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	87141614	87156578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ES_00000581	chr1	+	3248	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	-21	167	-21	-167	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCCATTTGCACTCCA	NA	False	NA	85	True	AATACA	-44	NA	87141614	87168043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
ES_00000582	chr1	+	3327	8	FSM	ENSMUSG00000026254.18	ENSMUST00000113235.8	3473	8	-21	167	-21	-167	multi-exon	FALSE	canonical	3	22	junction_7	1022.13094732005	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCCATTTGCACTCCA	NA	False	NA	85	True	AATACA	-44	NA	87141614	87168043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
ES_00000583	chr1	+	6102	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	0	-4533	0	2277	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACGTACATTGCCTAGT	NA	False	NA	NA	False	AATAAA	-33	NA	87141660	87158855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
ES_00000584	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87142007	87155786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ES_00000586	chr1	+	996	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174846.8	995	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	15	junction_3	89.5408038581046	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATAGTTTCATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	87254718	87283444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282692
ES_00000588	chr1	+	2952	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	-1	64	0	-64	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTCAGTGTTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	87254750	87285442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ES_00000589	chr1	+	4029	29	FSM	ENSMUSG00000048000.16	ENSMUST00000172794.8	4029	29	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	32.8746847583241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCCGCTGTGCCAGC	NA	False	NA	NA	False	NA	NA	NA	87254750	87376867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334723_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ES_00000591	chr1	+	5746	29	NNC	ENSMUSG00000048000.16	novel	5724	29	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	39.9502879864974	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGGTCTCTCTGAG	NA	False	NA	7	True	AATAAA	-17	NA	87254699	87378518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371544_87374031_87374182_87376799
ES_00000594	chr1	+	4789	27	FSM	ENSMUSG00000026288.15	ENSMUST00000042275.15	4880	27	91	0	54	0	multi-exon	FALSE	canonical	1	1	junction_3	193.802681328048	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTCCTGACTGTGTG	NA	False	NA	15	True	AATAAA	-16	NA	87548174	87648225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87548354_87563013_87563078_87593108_87593260_87595613_87595786_87597363_87597505_87604004_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ES_00000595	chr1	+	4125	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ES_00000596	chr1	+	4070	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	-128	0	-128	0	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9242	False	NA	14	True	AATAAA	-15	NA	87603832	87648224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
ES_00000598	chr1	+	3024	17	FSM	ENSMUSG00000026289.16	ENSMUST00000113186.8	3004	17	-20	0	0	0	multi-exon	FALSE	canonical	3	160	junction_8	19.4867743610891	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGCGTCTTGATT	7288	False	NA	17	True	AATAAA	-26	NA	87683777	87720144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
ES_00000604	chr1	+	483	4	FSM	ENSMUSG00000070738.11	ENSMUST00000190243.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_3	14.8174071805952	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCCCACCAGTCCATTT	4217	False	NA	NA	False	AATAAA	-32	NA	87808156	87843466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87808201_87809580_87809662_87842821_87842927_87843213
ES_00000606	chr1	+	3759	9	FSM	ENSMUSG00000070738.11	ENSMUST00000190061.7	3759	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_8	93.5974592336779	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGTCTATTCTGTTC	8778	False	NA	6	True	AATAAA	-17	NA	87862118	87872902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87870104
ES_00000613	chr1	+	4078	17	FSM	ENSMUSG00000055013.17	ENSMUST00000190096.7	4078	17	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_11	88.5197497384058	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACCCATGTTAATTTAT	NA	False	NA	39	True	AATAAA	-40	NA	89382595	89817723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ES_00000614	chr1	+	4983	18	NIC	ENSMUSG00000055013.17	novel	10065	18	NA	NA	-75	-28	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	103.172680861382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCATTGATTTTTGCA	NA	False	NA	11	True	AATAAA	-12	NA	89507882	89817695	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_89509376_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ES_00000616	chr1	+	1956	7	NIC	ENSMUSG00000055013.17	novel	4078	17	NA	NA	92	-228	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	175.349571491413	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAATCATGAATTCGGCTG	NA	False	NA	25	True	NA	NA	NA	89716976	89817495	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_89717047_89751578_89751657_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ES_00000625	chr1	+	3806	9	NIC	ENSMUSG00000026305.16	novel	3645	8	NA	NA	-79	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_5	16.4088390814219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	4	True	AATAAA	-18	NA	90981086	91045037	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91042317
ES_00000629	chr1	+	3853	16	FSM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	-2	0	0	0	multi-exon	TRUE	canonical	3	84	junction_2	27.1317771871533	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCCAGTGCTTTCTGT	4262	False	NA	11	True	AATAAA	-17	NA	91072822	91098517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
ES_00000633	chr1	+	1378	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	-15	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGAGACCATGCTAGGC	304	False	NA	NA	False	AAGAAA	-16	NA	91178025	91213747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ES_00000634	chr1	+	5654	10	FSM	ENSMUSG00000034343.15	ENSMUST00000171165.8	5654	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	86.300651614781	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGTGTTTTAGTTAGGA	337	False	NA	NA	False	NA	NA	NA	91178058	91218059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91178160_91181984_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ES_00000635	chr1	+	1110	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGATGCACACTCTCTTA	365	False	NA	NA	False	TATAAA	-6	NA	91178086	91213495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ES_00000642	chr1	+	3507	15	FSM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	-33	0	14	0	multi-exon	FALSE	canonical	2	37	junction_5	6.41943795619752	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGGACTGTCAAATTT	8951	False	NA	8	True	ATTAAA	-24	NA	91422382	91457029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
ES_00000648	chr1	+	2575	1	FSM	ENSMUSG00000026269.15	ENSMUST00000180306.2	2556	1	-28	9	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGCTCTCCAAAAAAAAGAA	6699	False	NA	NA	False	NA	NA	NA	92838546	92841121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_92838500_92841100
ES_00000649	chr1	+	1844	7	FSM	ENSMUSG00000026269.15	ENSMUST00000179127.8	1844	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	19.7961836950683	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGACCTCCCTTCCTG	NA	False	NA	19	True	ATTAAA	-13	NA	92844512	92848294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_92844669_92844868_92844983_92845355_92845469_92845739_92845849_92846627_92846826_92846905_92847049_92847283
ES_00000650	chr1	+	2902	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTAGTCTTGTTCCAAA	2260	False	NA	NA	False	AATAAA	-14	NA	92862097	92875663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
ES_00000656	chr1	+	3248	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	-29	0	-29	0	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406685	93437455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ES_00000660	chr1	+	3269	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	-2	0	-2	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406780	93437455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ES_00000666	chr1	+	4034	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	0	139	0	-139	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGAGGCTGCTACATTC	NA	False	NA	NA	False	NA	NA	NA	93682626	93718193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ES_00000670	chr1	+	3459	10	FSM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	13.9761701954911	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTCCACACATTTAGT	NA	False	NA	NA	False	CATAAA	-27	NA	93752995	93780070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93753303_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ES_00000671	chr1	+	207	1	Intergenic	novelGene_111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTCTAAATAGACTTA	5804	False	NA	NA	False	NA	NA	NA	93817631	93817838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_93817600_93817800
ES_00000675	chr1	+	639	2	Genic_Genomic	ENSMUSG00000081051.5	novel	531	1	NA	NA	-37	46713	multi-exon	FALSE	non_canonical	0	0	junction_1	0	367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCAGATGGGTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	95426308	95473589	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_95426910_95473551
ES_00000680	chr1	+	1817	8	NIC	ENSMUSG00000026333.15	novel	2046	8	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	18.8148877222268	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAAATGAAACGAAACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	97697906	97720686	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_97697981_97703171_97703318_97705050_97705245_97710862_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ES_00000681	chr1	+	2039	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	7	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAACTTTATCTGTGA	NA	False	NA	NA	False	AATAAA	-26	NA	97697903	97720694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ES_00000682	chr1	+	2378	8	FSM	ENSMUSG00000026333.15	ENSMUST00000027571.13	2494	8	-15	131	3	-131	multi-exon	FALSE	canonical	3	8	junction_3	17.1939714162035	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCTTCCTAAGTAATTT	NA	False	NA	NA	False	NA	NA	NA	97697906	97721303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710918_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ES_00000690	chr1	+	898	2	FSM	ENSMUSG00000026319.14	ENSMUST00000191150.2	874	2	-24	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591637	105592875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_105592359_105592698
ES_00000691	chr1	+	5414	29	FSM	ENSMUSG00000026319.14	ENSMUST00000086721.10	5414	29	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_22	32.829491470385	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATTTTAGAAATCTAATC	NA	False	NA	88	True	AATAAA	-18	NA	105591637	105682916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668737_105668821_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ES_00000692	chr1	+	6669	6	NIC	ENSMUSG00000026319.14	novel	809	7	NA	NA	-3387	28	intron_retention	FALSE	canonical	3	134	junction_4	11.61034021896	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTATTCTAATTTACAT	655	False	NA	116	True	TATAAA	-1	NA	105664549	105682944	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ES_00000693	chr1	+	6548	7	FSM	ENSMUSG00000026319.14	ENSMUST00000190459.7	809	7	-4126	-1613	-4126	-48	multi-exon	FALSE	canonical	3	120	junction_1	14.8735410115487	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACTTTGAATCACTTTA	NA	False	NA	35	True	AATAAA	-35	NA	105663810	105682863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ES_00000699	chr1	+	6598	13	FSM	ENSMUSG00000038866.16	ENSMUST00000119166.8	6368	13	-230	0	53	0	multi-exon	FALSE	canonical	3	40	junction_3	12.1609575646365	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTAAGAATTATGCCTTA	NA	False	NA	9	True	AATAAA	-13	NA	105918188	105961797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955132_105955262_105957481
ES_00000700	chr1	+	6594	13	NIC	ENSMUSG00000038866.16	novel	6368	13	NA	NA	82	3	intron_retention	FALSE	canonical	3	22	junction_11	16.9016764454496	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCCTTATTGCAAGTTT	NA	False	NA	19	True	AATAAA	-23	NA	105918217	105961807	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955117_105955262_105957481
ES_00000707	chr1	+	7326	37	NIC	ENSMUSG00000064302.14	novel	7207	37	NA	NA	-4	25	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	66.6482381936761	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAGATGCCCTGCAGGG	NA	False	NA	71	True	AATATA	-39	NA	118317198	118537255	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118483014_118483117_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ES_00000708	chr1	+	702	7	FSM	ENSMUSG00000064302.14	ENSMUST00000204904.3	702	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	88.9445832464737	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTCAGAAGGTAAGCCTGG	8274	False	NA	NA	False	NA	NA	NA	118399501	118432686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430700_118431549_118431686_118432625
ES_00000711	chr1	+	9255	15	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_14	461.494135103247	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118555686	118612898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605120
ES_00000712	chr1	+	4877	3	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	3765	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118559440	118612898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_118559492_118608035_118609404_118609440
ES_00000717	chr1	+	520	6	NNC	ENSMUSG00000026388.16	novel	488	6	NA	NA	-3	3223	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	18.5515498004884	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGCTGAGCATGAACATT	NA	False	NA	NA	False	AATAAA	-28	NA	120048921	120104519	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120104341
ES_00000729	chr1	+	4511	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_9	104.758039851747	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGATTGTGTGAACTATT	NA	False	NA	27	True	ATTAAA	-21	NA	127701900	127733669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
ES_00000730	chr1	+	6738	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGGCTGAAACATGTTT	NA	False	NA	8	True	AATAAA	-22	NA	127701900	127735798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
ES_00000731	chr1	+	7022	9	NIC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	26	0	intron_retention	FALSE	canonical	3	50	junction_6	145.842166399159	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGGCTGAAACATGTTT	NA	False	NA	8	True	AATAAA	-22	NA	127701926	127735798	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725934_127727126_127727291_127729342_127729414_127729898
ES_00000734	chr1	+	4587	24	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_12	31.0798106715592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCACTTTGTCTTTTTT	NA	False	NA	18	True	AATAAA	-14	NA	128031033	128165472	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00000735	chr1	+	4538	24	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_12	40.7907195049507	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-15	NA	128031035	128165473	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00000737	chr1	+	4299	23	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	55	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	73.0046556876075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-15	NA	128079605	128165473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_128079690_128080925_128081137_128095629_128095745_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128118374_128118477_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00000743	chr1	+	6449	8	FSM	ENSMUSG00000056211.14	ENSMUST00000190288.2	6449	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	13.5796967295042	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCACTTTGTCTTTTTT	NA	False	NA	18	True	AATAAA	-14	NA	128134728	128165472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00000748	chr1	+	2157	15	FSM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	-4	0	-4	0	multi-exon	FALSE	canonical	3	28	junction_14	169.094301066184	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTTTGTGTCTTATTT	NA	False	NA	NA	False	AGTAAA	-24	NA	131080913	131099976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131099657
ES_00000749	chr1	+	2013	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	-4	0	-4	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	1507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080913	131101215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ES_00000754	chr1	+	1245	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	-19	0	-3	0	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794958	131800625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ES_00000757	chr1	+	6020	7	FSM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	-22	0	0	0	multi-exon	FALSE	canonical	3	1163	junction_5	186.902306626275	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGCTTCGTGTGCTT	9282	False	NA	27	True	TATAAA	-18	NA	131838271	131864059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771
ES_00000760	chr1	+	4532	5	FSM	ENSMUSG00000026436.16	ENSMUST00000086556.12	4433	5	17	-116	17	116	multi-exon	FALSE	canonical	3	11	junction_4	2.9474565306379	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAAGCCTTCTATTTTCC	60	False	NA	NA	False	AATAGA	-3	NA	131935361	131954302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131935679_131942120_131942337_131945330_131946201_131947087_131947205_131951290
ES_00000762	chr1	+	1320	1	NIC	ENSMUSG00000026436.16	novel	2107	4	NA	NA	12841	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAAAATGACTTGGAGT	NA	False	NA	NA	False	AATAAA	-6	NA	131959021	131960341	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_131959000_131960300
ES_00000765	chr1	+	6282	13	FSM	ENSMUSG00000042046.16	ENSMUST00000045110.14	6282	13	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_10	4.74561200830128	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCGTTGCCTGTTTGGCTT	2925	False	NA	12	True	AATAAA	-17	NA	132345292	132394696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132345609_132361836_132362226_132377049_132377714_132380824_132381058_132381798_132381883_132382969_132383147_132383597_132383728_132384062_132384220_132384606_132384740_132386054_132386169_132387613_132387729_132390650_132390786_132391061
ES_00000767	chr1	+	3499	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAACCACAAGTATACATG	NA	False	NA	4	True	AATAAA	-13	NA	132405112	132433392	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
ES_00000768	chr1	+	6958	14	FSM	ENSMUSG00000048174.3_ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	-352	-3750	-350	0	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGGCAGTCTAACCCT	NA	False	NA	6	True	AATAAA	-16	NA	132404752	132436377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
ES_00000772	chr1	+	793	1	FSM	ENSMUSG00000100228.2	ENSMUST00000186115.2	639	1	-93	-61	-93	61	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAACTTCCATATCCCATC	NA	False	NA	NA	False	AATAAA	-40	NA	132953445	132954238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132953400_132954200
ES_00000774	chr1	+	7926	33	FSM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	2	0	2	0	multi-exon	FALSE	canonical	1	8	junction_4	3.18795952569979	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGCTATCATTATTAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	132973751	133036425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132974162_132993949_132994968_132998055_132998157_132998911_132999067_132999339_132999461_133002248_133002361_133002516_133002597_133003548_133003613_133005063_133005211_133005956_133005991_133007381_133007578_133008698_133008822_133012555_133012724_133013238_133013351_133014674_133014818_133015925_133016115_133017703_133017798_133017908_133018004_133018418_133018600_133019298_133019407_133020009_133020103_133021393_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ES_00000778	chr1	+	2292	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	-13	18	-13	2	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGTCTTGGAAGGACAGT	NA	False	NA	7	True	ATTAAA	-17	NA	133291296	133308056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
ES_00000781	chr1	+	361	1	FSM	ENSMUSG00000073559.3	ENSMUST00000097570.3	432	1	82	-11	82	11	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAACATAGGAATAAATTT	NA	False	NA	NA	False	CATAAA	-11	NA	134037187	134037548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134037200_134037500
ES_00000785	chr1	+	2420	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_5	130.869925880624	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	7971	False	NA	39	True	AATAAA	-27	NA	134333518	134339474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
ES_00000786	chr1	+	1837	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	53.3666562565053	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	7971	False	NA	43	True	AATAAA	-31	NA	134333518	134339478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ES_00000788	chr1	+	3446	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTCTTGGTTCCA	NA	False	NA	5	True	NA	NA	NA	134343193	134361086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ES_00000791	chr1	+	3277	12	FSM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_1	38.3780670833987	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383292	134418611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ES_00000801	chr1	+	1510	7	FSM	ENSMUSG00000026426.11	ENSMUST00000125774.2	1495	7	-15	0	-15	0	multi-exon	FALSE	canonical	1	1	junction_1	183.490235889179	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135075391	135084007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_135075466_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
ES_00000804	chr1	+	927	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	12	-123	multi-exon	FALSE	canonical	3	144	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGAAATTGGTCACTTT	4173	False	NA	NA	False	NA	NA	NA	135159744	135160840	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_135160090_135160258
ES_00000811	chr1	+	493	5	ISM	ENSMUSG00000026414.14	ENSMUST00000179863.8	1097	15	8564	5	-11	-5	3prime_fragment	FALSE	canonical	3	16	junction_2	1.6393596310755	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCACATATGGAATAGTG	9357	False	NA	-4	True	AATAAA	-11	NA	135777176	135779993	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_135777199_135778448_135778559_135779089_135779181_135779433_135779475_135779764
ES_00000820	chr1	+	8236	29	FSM	ENSMUSG00000041498.14	ENSMUST00000189413.7	8943	29	0	707	0	-707	multi-exon	FALSE	canonical	3	34	junction_22	10.1365045498829	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCAAAATGGCATCCTT	NA	False	NA	NA	False	NA	NA	NA	136395672	136458542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047_136431178_136437882_136437984_136441471_136441561_136443591_136443817_136443997_136444180_136447366_136447523_136448927_136449048_136453519_136453595_136454512_136454646_136454983
ES_00000826	chr1	+	4933	2	FSM	ENSMUSG00000041483.15	ENSMUST00000047734.15	4933	2	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATATCACTTAGTCTCT	NA	False	NA	16	True	AATAAA	-29	NA	136552638	136557791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_136552790_136553009
ES_00000829	chr1	+	8419	23	NIC	ENSMUSG00000056268.16	novel	8206	22	NA	NA	121	0	combination_of_known_junctions	TRUE	canonical	3	41	junction_8	11.4355000396583	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGTGGTGATGGCT	NA	False	NA	11	True	AATAAA	-17	NA	138891293	139103781	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138986804_138986865_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
ES_00000831	chr1	+	8206	22	FSM	ENSMUSG00000056268.16	ENSMUST00000168527.8	8206	22	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	13.1823079402048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGTGGTGATGGCT	NA	False	NA	11	True	AATAAA	-17	NA	138891446	139103781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
ES_00000834	chr1	+	8593	11	FSM	ENSMUSG00000033964.13	ENSMUST00000039867.10	8361	11	-133	-99	-39	99	multi-exon	TRUE	canonical	3	10	junction_1	14.624978632463	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCTTGGGAACGTTTT	NA	False	NA	NA	False	TATAAA	-30	NA	139349986	139380842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_139350162_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
ES_00000846	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	143653009	143683043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
ES_00000847	chr1	+	1854	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	-9	0	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	143653009	143683204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ES_00000849	chr1	+	882	7	FSM	ENSMUSG00000018189.13	ENSMUST00000185539.2	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	477.081288205224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143670454	143682679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
ES_00000853	chr1	+	7466	51	FSM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	14	0	14	0	multi-exon	TRUE	canonical	3	414	junction_6	73.7537117710017	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTTTCTTCATTTCA	NA	False	NA	25	True	AATAAA	-24	NA	150269014	150325686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
ES_00000854	chr1	+	6314	41	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	61	9623	61	0	5prime_fragment	FALSE	canonical	3	414	junction_6	68.8321826982117	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTTGTTTGTTTGGCT	NA	False	NA	15	True	AATAAA	-16	NA	150269061	150316063	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817
ES_00000863	chr1	+	2783	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	0	0	0	0	multi-exon	TRUE	canonical	3	234	junction_7	396.626282743927	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGTCTGTAGCCTTTTA	NA	False	NA	11	True	ATTAAA	-28	NA	151220259	151232550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
ES_00000864	chr1	+	3346	14	FSM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	-9	0	0	0	multi-exon	TRUE	canonical	3	49	junction_6	362.778266997786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTTGCACTGTGGGAT	NA	False	NA	10	True	ATTAAA	-14	NA	151220259	151240166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ES_00000865	chr1	+	4389	15	FSM	ENSMUSG00000023150.15	ENSMUST00000186745.2	3315	15	0	-1074	0	17	multi-exon	FALSE	canonical	3	234	junction_7	304.179802157895	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCAAATGTTTGTCACTC	NA	False	NA	34	True	ATTAAA	-38	NA	151220328	151240190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ES_00000868	chr1	+	2450	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304419	151333912	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ES_00000869	chr1	+	2437	1	FSM	ENSMUSG00000103928.2	ENSMUST00000192826.2	2437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGGAAAAAGAAAAGAG	NA	False	NA	NA	False	AAGAAA	-28	NA	151321055	151323492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_151321100_151323500
ES_00000870	chr1	+	6814	14	FSM	ENSMUSG00000026483.14	ENSMUST00000148810.8	6531	14	-283	0	-96	0	multi-exon	FALSE	canonical	3	182	junction_12	16.2156327524439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGTTGCTCATTTATC	NA	False	NA	11	True	AATAAA	-19	NA	151446840	151597690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
ES_00000872	chr1	+	3115	20	FSM	ENSMUSG00000043019.13	ENSMUST00000187951.7	3115	20	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_15	41.5758160046714	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAGAAGCAAATTCAGCT	NA	False	NA	NA	False	NA	NA	NA	151631210	151694730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_151631479_151635488_151635535_151646582_151646684_151647160_151647201_151651607_151651721_151653156_151653311_151658123_151658259_151660489_151660596_151668078_151668177_151670426_151670553_151670730_151670815_151671816_151671901_151672533_151672659_151680028_151680195_151680415_151680571_151681597_151681698_151683116_151683309_151683954_151684121_151687269_151687456_151694060
ES_00000877	chr1	+	4134	5	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	135346	0	-3131	0	3prime_fragment	FALSE	canonical	3	59	junction_1	77.8985718739439	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTCTTGTGTCTTTGT	NA	False	NA	13	True	AATAAA	-14	NA	152966094	152995007	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ES_00000878	chr1	+	3228	6	NNC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	-3143	5	at_least_one_novel_splicesite	FALSE	non_canonical	2	57	junction_5	88.3348175975929	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGTCTTTGTCCAGA	NA	False	NA	18	True	AATAAA	-19	NA	152966082	152995012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313_152992702_152993624
ES_00000879	chr1	+	539	3	FSM	ENSMUSG00000042751.15	ENSMUST00000190960.2	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	72	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGAAAGAGGCAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	152969225	152970343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_152969301_152969782_152969860_152969956
ES_00000880	chr1	+	533	4	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-58	3512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	86.5678924313166	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCAAAATCTGAGCGTC	NA	False	NA	20	True	NA	NA	NA	152969167	152973855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_152969301_152969782_152969860_152973484_152973541_152973588
ES_00000881	chr1	+	4018	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	3	5	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGTCTTTGTCCAGA	NA	False	NA	18	True	AATAAA	-19	NA	152969228	152995012	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ES_00000882	chr1	+	3998	5	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	317	1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	96.3872398193869	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTCTTGTGTCTTTGTC	NA	False	NA	14	True	AATAAA	-15	NA	152969542	152995008	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_152969599_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ES_00000887	chr1	+	4622	8	FSM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	-33	0	-33	0	multi-exon	TRUE	canonical	3	152	junction_7	29.3257565972304	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGATTGGTCTGCTG	NA	False	NA	NA	False	TATAAA	-19	NA	155034427	155081405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155077685
ES_00000888	chr1	+	950	8	FSM	ENSMUSG00000026470.15	ENSMUST00000195302.6	955	8	0	5	0	-5	multi-exon	FALSE	canonical	3	4	junction_7	71.1646552950642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAATTCCTGCCTCCTT	NA	False	NA	NA	False	ATTAAA	-7	NA	155034493	155073996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155073882
ES_00000890	chr1	+	1268	4	FSM	ENSMUSG00000033701.14	ENSMUST00000097529.5	1255	4	-13	0	-7	0	multi-exon	FALSE	canonical	3	9	junction_3	164.081280671095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCCGGAGATAAGTGTT	NA	False	NA	6	True	NA	NA	NA	155433858	155463544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155463185
ES_00000891	chr1	+	4651	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	3	938	-1	-938	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGCTTAACTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	155433870	155566138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ES_00000894	chr1	+	2616	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911517	155929275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_155911838_155916820_155916881_155927039
ES_00000895	chr1	+	2907	2	FSM	ENSMUSG00000050565.17	ENSMUST00000131359.2	621	2	-216	-2070	-216	3	multi-exon	FALSE	canonical	3	246	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTTTGTCTCTTTAA	NA	False	NA	13	True	AATAAA	-22	NA	155916419	155929485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155916881_155927039
ES_00000896	chr1	+	5683	5	FSM	ENSMUSG00000050565.17	ENSMUST00000060404.5	5135	5	-548	0	-548	0	multi-exon	FALSE	canonical	3	13	junction_1	13.683932183404	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTGCGGTTGTTAGTG	NA	False	NA	51	True	AATAAA	-14	NA	155916087	155944607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155916749_155935156_155935334_155937333_155937916_155939338_155939441_155940446
ES_00000897	chr1	+	2589	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	41.5	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155916749_155916820_155916881_155927039
ES_00000898	chr1	+	2529	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_155916749_155927039
ES_00000905	chr1	+	8809	3	NNC	ENSMUSG00000026596.14	novel	3549	12	NA	NA	20925	2	intron_retention	TRUE	canonical	2	4	junction_2	1.5	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAAGTTGTGTTTTGTT	9128	False	NA	31	True	AATAAA	-44	NA	156464417	156477140	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_156464478_156468008_156468183_156468565
ES_00000907	chr1	+	1194	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	0	0	0	0	multi-exon	FALSE	canonical	3	989	junction_1	26.5	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGCCCAGTGTCTTC	NA	False	NA	35	True	AATAAA	-17	NA	157239921	157247806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_157240696_157241313_157241366_157247438
ES_00000908	chr1	+	1621	10	FSM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	-3	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	9.08125188520113	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286146	157316630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
ES_00000909	chr1	+	2131	8	FSM	ENSMUSG00000033488.12	ENSMUST00000193791.6	778	8	-190	-1163	-190	731	multi-exon	FALSE	canonical	1	1	junction_7	18.9725903258746	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGAGAGAGCAGAGCGTG	NA	False	NA	NA	False	TATAAA	-41	NA	157285956	157317361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157316012
ES_00000911	chr1	+	5120	20	FSM	ENSMUSG00000040782.13	ENSMUST00000076894.11	5116	20	-6	2	0	-2	multi-exon	FALSE	canonical	3	188	junction_4	50.8633495988022	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGATATGGTGGCACACT	NA	False	NA	NA	False	ATTAAA	-20	NA	159059889	159175208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_159060421_159067131_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
ES_00000916	chr1	+	791	2	FSM	ENSMUSG00000040782.13	ENSMUST00000192841.2	776	2	-15	0	-15	0	multi-exon	FALSE	canonical	3	400	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAACAACAAAAAGTTTAT	NA	False	NA	NA	False	AATAAA	-11	NA	159169910	159172670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_159170422_159172390
ES_00000918	chr1	+	3604	3	FSM	ENSMUSG00000058267.14	ENSMUST00000097193.3	787	3	28	-2845	28	487	multi-exon	FALSE	canonical	3	14	junction_1	1371.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTTACTTCACAGCTC	NA	False	NA	NA	False	NA	NA	NA	160022900	160030227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160023116_160024515_160024675_160026997
ES_00000924	chr1	+	557	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	0	0	0	0	multi-exon	TRUE	canonical	3	3085	junction_7	1053.46856146731	1131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862636	160866107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00000927	chr1	+	349	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	-3	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862732	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
ES_00000928	chr1	+	2559	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	-3	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862732	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
ES_00000929	chr1	+	1635	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	-21	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862732	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00000930	chr1	+	1066	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159890.8	1066	9	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_5	979.227469743369	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862757	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00000932	chr1	+	416	6	FSM	ENSMUSG00000053332.14	ENSMUST00000161623.8	403	6	-13	0	-13	0	multi-exon	FALSE	canonical	3	3085	junction_2	1008.25591989336	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160864251	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00000935	chr1	+	572	2	FSM	ENSMUSG00000053332.14	ENSMUST00000160516.2	572	2	0	0	0	0	multi-exon	FALSE	canonical	3	5569	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160865350	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160865608_160865794
ES_00000938	chr1	+	2010	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-16	3	0	1	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGCTGGTCTTGTCTTTG	NA	False	NA	9	True	NA	NA	NA	160898519	160914291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
ES_00000939	chr1	+	625	2	ISM	ENSMUSG00000044835.16	ENSMUST00000052245.9	849	6	-46	12722	-2	-11826	5prime_fragment	FALSE	canonical	0	0	junction_1	0	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGTCAAACTTACCTGA	NA	False	NA	NA	False	ATTAAA	-20	NA	160970290	160979039	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_160970411_160978534
ES_00000941	chr1	+	3726	7	FSM	ENSMUSG00000044835.16	ENSMUST00000111608.8	3714	7	-12	0	9	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5547308932143	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATGTTACACGTTTT	NA	False	NA	6	True	NA	NA	NA	160970269	160998068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281
ES_00000943	chr1	+	3567	8	NNC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	45	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	42.3546735006532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTTACACGTTTTCT	NA	False	NA	8	True	NA	NA	NA	160970381	160998070	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281_160995606_160995654
ES_00000949	chr1	+	2669	8	FSM	ENSMUSG00000026696.16	ENSMUST00000132158.8	2752	8	83	0	8	0	multi-exon	FALSE	canonical	3	16	junction_7	107.103040220574	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTGTGGCTTGTTCAG	NA	False	NA	73	True	AATAAA	-24	NA	162398166	162426653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162424617
ES_00000956	chr1	+	1436	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	-17	0	-17	0	multi-exon	FALSE	canonical	3	75	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822440	163824812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_163822547_163823482
ES_00000957	chr1	+	1546	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	-33	0	-33	0	multi-exon	FALSE	canonical	3	49	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822424	163824812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_163822641_163823482
ES_00000959	chr1	+	3483	6	FSM	ENSMUSG00000040918.13	ENSMUST00000159230.8	3432	6	-51	0	-42	0	multi-exon	FALSE	canonical	3	46	junction_2	97.8296478578963	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTTTCACTCAGAA	NA	False	NA	13	True	AATAAA	-15	NA	164076572	164092938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_164077026_164084315_164084805_164088360_164088587_164089615_164089809_164090188_164090331_164090958
ES_00000964	chr1	+	691	4	FSM	ENSMUSG00000026575.16	ENSMUST00000193237.2	1974	4	-24	1307	0	-1307	multi-exon	FALSE	canonical	3	68	junction_1	30.12566274052	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGATTGGTTCCTAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	164135641	164160499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_164135820_164140421_164140508_164155861_164155970_164160180
ES_00000966	chr1	+	703	6	FSM	ENSMUSG00000026575.16	ENSMUST00000192710.2	687	6	-16	0	-16	0	multi-exon	FALSE	canonical	3	9	junction_1	52.9550752997293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACAAGTGACTTTGGTT	7368	False	NA	NA	False	AATAAA	-12	NA	164200821	164264861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_164200904_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ES_00000967	chr1	+	335	1	FSM	ENSMUSG00000103493.2	ENSMUST00000194180.2	2282	1	1028	919	1028	-919	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACAACCGGCTCCTTAG	4009	False	NA	NA	False	NA	NA	NA	164253309	164253644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_164253300_164253600
ES_00000974	chr1	+	1865	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	-295	3	-295	-3	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCCTTGTCTCCTGTTC	NA	False	NA	12	True	AATAAA	-19	NA	167135651	167158351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ES_00000975	chr1	+	1706	7	FSM	ENSMUSG00000052428.11	ENSMUST00000193446.6	1122	7	-587	3	-295	-3	multi-exon	FALSE	canonical	3	73	junction_1	167.36951800001	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCCTTGTCTCCTGTTC	NA	False	NA	12	True	AATAAA	-19	NA	167135651	167158351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_167136344_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ES_00000981	chr1	+	531	1	FSM	ENSMUSG00000102193.2	ENSMUST00000194441.2	581	1	-9	59	-9	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGAAGAAGATATCCCAG	NA	False	NA	NA	False	NA	NA	NA	170458480	170459011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_170458500_170459000
ES_00000983	chr1	+	642	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3265	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	55.1180551180827	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGTGTCTTTGGGT	NA	False	NA	16	True	AATAAA	-22	NA	171049357	171053947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_171049548_171052852_171052936_171053234_171053368_171053711
ES_00000985	chr1	+	595	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3191	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	63.2233145287401	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049431	171053942	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_171049548_171050883_171050916_171052852_171052936_171053234_171053368_171053711
ES_00000989	chr1	+	2117	9	FSM	ENSMUSG00000052423.16	ENSMUST00000111313.10	2098	9	-19	0	-4	0	multi-exon	FALSE	non_canonical	1	1	junction_1	95.4135734578681	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTGATTTCTGCAT	NA	False	NA	16	True	AATAAA	-16	NA	171097893	171104469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171097985_171098561_171098676_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ES_00000990	chr1	+	2825	6	FSM	ENSMUSG00000052423.16	ENSMUST00000129985.4	2805	6	-20	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	25.5029410068721	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTGATTTCTGCAT	NA	False	NA	16	True	AATAAA	-16	NA	171097923	171104469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171097985_171098772_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ES_00000994	chr1	+	2563	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111300.8	2563	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	69.9674209900579	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACTTTTCTGAAACTGA	1192	False	NA	NA	False	AATAAA	-17	NA	171156712	171169899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171157095_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ES_00000995	chr1	+	1996	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	-378	0	-115	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1077	False	NA	18	True	NA	NA	NA	171156597	171169250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ES_00000997	chr1	+	2242	5	FSM	ENSMUSG00000013973.13	ENSMUST00000129116.8	849	5	-17	-1376	-17	0	multi-exon	FALSE	canonical	3	47	junction_1	84.8038177206663	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCCCACTTTTCTGA	1640	False	NA	NA	False	AATAAA	-11	NA	171157160	171169893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ES_00000999	chr1	+	1764	4	FSM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	-27	-852	-27	0	multi-exon	FALSE	canonical	3	27	junction_3	957.822994550083	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	5	True	NA	NA	NA	171173270	171186822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185355
ES_00001004	chr1	+	2186	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	-19	0	-19	0	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCCCCTGGATGTGAGG	6718	False	NA	NA	False	NA	NA	NA	171238861	171246710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ES_00001018	chr1	+	867	5	FSM	ENSMUSG00000003464.14	ENSMUST00000147799.8	855	5	-12	0	-11	0	multi-exon	FALSE	canonical	3	412	junction_2	19.600701518058	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTGACTGATTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	171954310	171958578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
ES_00001020	chr1	+	2373	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-11	495	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTTCGAGTTCGTAACAT	NA	False	NA	23	True	AAGAAA	-20	NA	171954310	171963345	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ES_00001021	chr1	+	2849	6	FSM	ENSMUSG00000003464.14	ENSMUST00000111252.4	2844	6	-5	0	1	0	multi-exon	FALSE	canonical	0	0	junction_1	172.528722246471	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAAAGTTTTTAGACAGT	NA	False	NA	NA	False	NA	NA	NA	171954323	171964060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171954416_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ES_00001022	chr1	+	3939	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	-157	-923	-99	0	multi-exon	TRUE	canonical	3	161	junction_1	115.931269170995	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTATGTG	NA	False	NA	16	True	AGTAAA	-16	NA	171975551	172023956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ES_00001025	chr1	+	2754	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_1	55.9704063816991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTCTATGAATCCA	NA	False	NA	56	True	TTTAAA	-6	NA	171975684	172023074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ES_00001026	chr1	+	4656	13	FSM	ENSMUSG00000026554.16	ENSMUST00000074144.11	4656	13	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_9	39.6410106105057	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTATGTG	NA	False	NA	16	True	AGTAAA	-16	NA	171975744	172023956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ES_00001029	chr1	+	2278	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3743	False	NA	19	True	AATAAA	-19	NA	172139933	172147408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
ES_00001030	chr1	+	7644	1	FSM	ENSMUSG00000050229.4	ENSMUST00000052455.4	7554	1	-101	11	-101	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATCCAATCTCTTGTC	5349	False	NA	141	True	AAGAAA	-29	NA	172204011	172211655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172204000_172211700
ES_00001032	chr1	+	4131	21	FSM	ENSMUSG00000037995.16	ENSMUST00000052629.13	4133	21	-2	4	-2	-4	multi-exon	TRUE	canonical	2	4	junction_16	2.95127091267474	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCTCTGTCACCTCTCT	NA	False	NA	0	True	AATAAA	-12	NA	172309779	172326440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172309828_172311847_172312114_172312348_172312538_172317079_172317233_172317855_172318011_172318221_172318340_172319181_172319324_172319431_172319578_172319667_172319811_172321053_172321195_172321664_172321782_172321972_172322124_172322319_172322444_172322674_172322851_172323100_172323352_172323549_172323635_172323717_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
ES_00001036	chr1	+	1837	12	FSM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	70	1	-22	-1	multi-exon	TRUE	canonical	3	18	junction_1	6.26415751889171	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGCTCCACTTCACTG	5492	False	NA	5	True	ATTAAA	-18	NA	172348680	172373436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ES_00001037	chr1	+	710	5	FSM	ENSMUSG00000026546.17	ENSMUST00000159792.8	699	5	-11	0	-11	0	multi-exon	FALSE	canonical	1	2	junction_1	14.4654761414894	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGACATGAGCAAGGTGG	NA	False	NA	NA	False	NA	NA	NA	172353604	172360252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172353746_172355356_172355483_172357376_172357520_172359647_172359793_172360097
ES_00001039	chr1	+	3339	10	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	68229	-317	-88	317	3prime_fragment	FALSE	canonical	3	10	junction_1	34.5450144694044	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGCAAAAATCACATTTT	NA	False	NA	NA	False	AATAAA	-12	NA	173246673	173293923	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_173247122_173248136_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ES_00001043	chr1	+	7791	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	4	1	4	-1	multi-exon	FALSE	canonical	3	208	junction_2	66.5922714152693	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGACTTGTATCTTTT	9557	False	NA	NA	False	NA	NA	NA	175708150	175741054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ES_00001046	chr1	+	2980	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	73.1663257550206	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTGGGAAGTTTAAATG	9766	False	NA	5	True	AATAAA	-13	NA	175708359	175736298	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ES_00001049	chr1	+	4054	18	FSM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	216	-1494	216	1494	multi-exon	FALSE	canonical	1	6	junction_6	3.6941925807312	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTTGGTCAAGTAAAAACA	NA	False	NA	NA	False	NA	NA	NA	176642441	176849497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329_176681469_176695777_176695931_176702129_176702265_176705555_176705673_176747109_176747253_176773673_176773802_176775846_176775956_176783357_176783490_176839454_176839582_176847680
ES_00001051	chr1	+	3979	2	FSM	ENSMUSG00000063659.12	ENSMUST00000195002.2	394	2	-58	-3527	-58	0	multi-exon	FALSE	canonical	3	20	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTGTGCTTTTTGTA	NA	False	NA	7	True	AATAAA	-17	NA	177269858	177278330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_177270162_177274654
ES_00001059	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	False	NA	20	True	ATTAAA	-23	NA	178146694	178150258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
ES_00001073	chr1	+	3539	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	-356	66765	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	32.1645767887594	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCATAGCAGTTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	180468358	180585024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832_180518251_180584999
ES_00001074	chr1	+	3682	17	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	-356	66765	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	40.3794502191399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCATAGCAGTTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	180468358	180585024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_180468963_180469414_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832_180518251_180584999
ES_00001075	chr1	+	3160	15	FSM	ENSMUSG00000058729.14	ENSMUST00000192561.6	3160	15	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	15.1320716307033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468714	180518252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ES_00001076	chr1	+	3641	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	-405	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	31.7940595429747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468309	180518252	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_180468963_180469481_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ES_00001080	chr1	+	1608	4	Fusion	ENSMUSG00000038793.9_ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	0	multi-exon	FALSE	canonical	3	702	junction_3	276.972120538432	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180720672	180765965	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_180720999_180721699_180721947_180722160_180722407_180765176
ES_00001084	chr1	+	1620	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762586	180765965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
ES_00001085	chr1	+	3430	23	FSM	ENSMUSG00000026519.17	ENSMUST00000027800.15	3306	23	-130	6	-15	3	multi-exon	TRUE	canonical	3	13	junction_1	9.65307299163423	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTCTCATGCTTCTT	NA	False	NA	9	True	AATAAA	-25	NA	180769893	180802671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180770125_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ES_00001087	chr1	+	3289	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	-21	0	-21	0	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978474	180996559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
ES_00001088	chr1	+	3220	4	FSM	ENSMUSG00000062169.14	ENSMUST00000111059.2	3127	4	-93	0	-93	0	multi-exon	FALSE	canonical	3	142	junction_3	804.702429473156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978402	180996559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180993745
ES_00001089	chr1	+	622	4	FSM	ENSMUSG00000062169.14	ENSMUST00000075968.14	622	4	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	993.032504782978	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTGAGTTTTTGTAGA	NA	False	NA	3	True	CATAAA	-14	NA	180982302	180993946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180982470_180983423_180983537_180989639_180989781_180993745
ES_00001094	chr1	+	2199	2	Intergenic	novelGene_223	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATGCAATTTTTAA	1052	False	NA	NA	False	NA	NA	NA	181854824	181857405	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_181856461_181856842
ES_00001095	chr1	+	1291	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	17	-485	4	-3	multi-exon	FALSE	canonical	3	66	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTCTTGTATAGGTTTC	NA	False	NA	23	True	AATAAA	-31	NA	181952318	181959969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_181952541_181958900
ES_00001106	chr1	+	4435	35	FSM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	-17	0	-17	0	multi-exon	FALSE	canonical	2	15	junction_25	17.4221203306776	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATGCAGATGCTTTATT	NA	False	NA	88	True	TATAAA	-19	NA	184936296	185016382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999212_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
ES_00001108	chr1	+	1249	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	-23	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064345	185088978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
ES_00001109	chr1	+	2200	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064345	185089974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ES_00001110	chr1	+	842	7	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	9	2730	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	99.9566572737071	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTAGTGTGGAAGTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	185064385	185081631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185081345
ES_00001111	chr1	+	2030	8	NIC	ENSMUSG00000026617.17	novel	1046	8	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	112.358754869918	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAATTGCCTTTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	185064388	185089969	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_185064461_185073419_185073525_185077511_185077625_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ES_00001112	chr1	+	2122	10	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	46	junction_9	73.8286303995047	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064403	185089974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674_185089202_185089221
ES_00001113	chr1	+	5638	20	FSM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	246.149122650716	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAAAATCTTG	NA	False	NA	NA	False	NA	NA	NA	185095240	185142396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687
ES_00001123	chr1	+	10746	19	FSM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_17	4.78713553878169	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTTTTGGTAACAC	NA	False	NA	NA	False	AATAAA	-19	NA	189460464	189608892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
ES_00001124	chr1	+	3625	13	ISM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	-70	24719	-70	0	5prime_fragment	FALSE	canonical	3	11	junction_2	5.22812904711937	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189460394	189584173	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
ES_00001130	chr1	+	3524	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190661024	190679159	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ES_00001132	chr1	+	859	5	FSM	ENSMUSG00000062510.13	ENSMUST00000139340.8	837	5	-22	0	-10	0	multi-exon	FALSE	canonical	2	3	junction_4	96.9442494426565	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTTTCTGAGGTCAG	NA	False	NA	NA	False	NA	NA	NA	190795198	190809136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190808813
ES_00001133	chr1	+	2973	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	-43	-1915	at_least_one_novel_splicesite	FALSE	non_canonical	3	120	junction_6	39.1013640000789	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTTTACTGTATTTTA	NA	False	NA	17	True	AATAAA	-21	NA	190795165	190816756	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815834_190815886
ES_00001134	chr1	+	4898	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	-19	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	190795208	190818671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
ES_00001141	chr1	+	7198	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110856.8	2792	8	-128	-4278	-128	0	multi-exon	FALSE	canonical	3	42	junction_1	20.3610271983372	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGGCCTTGTTCTTAA	NA	False	NA	9	True	AATAAA	-18	NA	191450372	191516367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_191450710_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
ES_00001143	chr1	+	3167	8	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_7	134.022233915397	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGATGTTTGTATTCT	NA	False	NA	29	True	TATAAA	-40	NA	191553594	191565162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563269
ES_00001150	chr1	+	214	1	FSM	ENSMUSG00000104348.2	ENSMUST00000192147.2	2573	1	46	2313	46	-2313	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGGAATCCTAAAGTCC	NA	False	NA	NA	False	NA	NA	NA	192963624	192963838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_192963600_192963800
ES_00001155	chr1	-	1894	5	FSM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	911.97762445139	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAACTCTCCCTCTTC	1649	False	NA	NA	False	AATAAA	-22	NA	4855933	4843428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00001156	chr1	-	4208	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	0	-5	0	0	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAACTCTCCCTCTTC	1620	False	NA	NA	False	AATAAA	-22	NA	4855962	4843428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00001157	chr1	-	1044	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_1	854.470221833388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACATCTGACCAGCAT	1661	False	NA	-18	True	NA	NA	NA	4855921	4844658	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_4844740_4846632_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00001159	chr1	-	1569	4	FSM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	1077.56031024821	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATATAAGAGTTTTGTC	1620	False	NA	NA	False	TTTAAA	-22	NA	4855962	4851443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_4852525_4852790_4852957_4854173_4854329_4855795
ES_00001164	chr1	-	204	2	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACAGAAGCAACAAAAACC	NA	False	NA	NA	False	NA	NA	NA	6497580	6438549	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_6438701_6497527
ES_00001173	chr1	-	475	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	0	-2	0	2	multi-exon	TRUE	canonical	3	370	junction_3	129.892263049036	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGACTTTTTGTCAATGC	NA	False	NA	3	True	AATAAA	-17	NA	10014343	10012181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10012381_10012547_10012617_10012834_10012943_10014244
ES_00001174	chr1	-	816	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	75	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10013448	10012247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10012381_10012547_10012617_10012834
ES_00001175	chr1	-	402	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	0	-2	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10014342	10012247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
ES_00001176	chr1	-	3962	3	NNC	ENSMUSG00000099032.3	novel	4193	2	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	6	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTGTTAACTCTGC	27	True	NA	NA	False	AATAAA	-17	NA	10038110	10030387	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_10033747_10037323_10037743_10037926
ES_00001177	chr1	-	1722	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	0	-24	0	24	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCCCAGTTTGGCCTCAA	NA	False	NA	23	True	NA	NA	NA	10108352	10094801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ES_00001178	chr1	-	1291	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	0	16	combination_of_known_junctions	FALSE	canonical	3	100	junction_7	313.343653036022	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGTTTTGTAGT	NA	False	NA	-9	True	AATAAA	-18	NA	10108163	10095051	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107886
ES_00001179	chr1	-	7493	38	FSM	ENSMUSG00000067851.12	ENSMUST00000088615.11	6978	38	-461	-54	-461	54	multi-exon	TRUE	canonical	3	88	junction_35	18.4564716033902	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTTTTTAAGCTACAGA	NA	False	NA	38	True	ATTAAA	-17	NA	10303356	10207741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10209222_10210691_10210810_10211783_10211923_10212800_10212970_10214942_10215083_10217627_10217761_10222025_10222099_10223610_10223750_10223831_10223968_10224505_10224636_10227138_10227270_10228124_10228286_10229792_10229966_10230101_10230254_10230925_10231096_10231187_10231229_10233921_10234013_10243058_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
ES_00001180	chr1	-	3424	20	FSM	ENSMUSG00000067851.12	ENSMUST00000131556.2	3424	20	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_17	20.9399616632847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAATGTAATGTTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	10302895	10243299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
ES_00001182	chr1	-	553	2	Antisense	novelGene_ENSMUSG00000057715.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	301	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTAACATCAATGGTCTC	NA	False	NA	NA	False	NA	NA	NA	11694914	11689576	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_11689905_11694689
ES_00001184	chr1	-	3823	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	-983	-276	-983	276	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCGTAATTGGATGGCT	NA	False	NA	-5	True	AATAAA	-16	NA	13198370	13183404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
ES_00001186	chr1	-	8121	22	FSM	ENSMUSG00000005886.15	ENSMUST00000068304.13	8006	22	-79	-36	-79	-18	multi-exon	FALSE	canonical	3	14	junction_10	11.9773027979143	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTTAGAGATTTTAATG	NA	False	NA	-17	True	AATAAA	-24	NA	13444386	13209346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13237119_13237331_13244302_13245573_13247297_13247446_13250704_13250849_13251439_13251542_13254398_13254588_13256956_13257135_13260310_13260415_13291530_13291704_13294832_13294938_13356192_13356250_13444161
ES_00001189	chr1	-	2938	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	0	0	0	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9656	False	NA	-9	True	ATTAAA	-15	NA	13660134	13634921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
ES_00001191	chr1	-	4498	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	-4	0	4	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTGAACTAATTTCTA	NA	False	NA	NA	False	AATAAA	-35	NA	13730770	13693549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ES_00001192	chr1	-	5057	2	FSM	ENSMUSG00000102982.2_ENSMUSG00000025937.7	ENSMUST00000156222.2	400	2	-4474	-183	-137	183	multi-exon	FALSE	canonical	3	2624	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTCTAAGAAAAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	13713109	13700035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_13700438_13708454
ES_00001196	chr1	-	4349	18	FSM	ENSMUSG00000025932.15	ENSMUST00000027066.13	4347	18	0	-2	0	2	multi-exon	FALSE	canonical	3	31	junction_13	8.24998689314257	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTGGATGTCAGTATC	NA	False	NA	-9	True	AATAAA	-23	NA	14380424	14239175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ES_00001201	chr1	-	996	1	FSM	ENSMUSG00000073737.4	ENSMUST00000086739.6	996	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAACCCTGGACCACCC	NA	False	NA	NA	False	NA	NA	NA	15340021	15339025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_15339000_15340000
ES_00001202	chr1	-	421	2	FSM	ENSMUSG00000043716.14	ENSMUST00000140597.8	421	2	0	0	0	0	multi-exon	FALSE	canonical	3	5309	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16172306	16171518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16171584_16171950
ES_00001204	chr1	-	838	6	FSM	ENSMUSG00000043716.14	ENSMUST00000149566.2	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	2771.11529893651	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCAACAGGGAAGACC	NA	False	NA	NA	False	AAAAAG	-27	NA	16174451	16172003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174360
ES_00001205	chr1	-	4073	12	FSM	ENSMUSG00000025920.20	ENSMUST00000128957.9	3907	12	7	-173	0	94	multi-exon	FALSE	canonical	3	38	junction_10	22.8368268627019	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAGTTCACTTTCTTCTG	NA	False	NA	NA	False	AAAAAG	-26	NA	16589464	16413536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
ES_00001210	chr1	-	1510	7	FSM	ENSMUSG00000025939.20	ENSMUST00000182554.9	1508	7	0	-2	0	2	multi-exon	FALSE	canonical	2	9	junction_2	188.385243583461	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGTCTGTTCTTAAATT	NA	False	NA	NA	False	AATAAA	-19	NA	16689536	16611011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16612014_16614172_16614257_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
ES_00001211	chr1	-	3082	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	205	-1106	0	1106	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGCTGTGTTCATCCC	NA	False	NA	NA	False	AAGAAA	-9	NA	16689508	16638899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ES_00001212	chr1	-	1863	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCAAGCTCTGTTTCT	NA	False	NA	NA	False	TATAAA	-12	NA	16689483	16640014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
ES_00001214	chr1	-	2014	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727108	16711948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ES_00001215	chr1	-	1209	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186701.2	534	4	30	-705	30	0	multi-exon	FALSE	canonical	3	83	junction_3	1176.35397167123	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16726819	16712990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519
ES_00001216	chr1	-	2002	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	-1042	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727266	16711948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ES_00001217	chr1	-	882	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	-241	0	-217	0	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTGAAATTTGTTT	NA	False	NA	-82	True	NA	NA	NA	16727483	16713365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
ES_00001220	chr1	-	1901	1	FSM	ENSMUSG00000091020.4	ENSMUST00000071842.10	1860	1	85	-126	85	126	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGAACTCATTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	16840277	16838376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16838400_16840300
ES_00001221	chr1	-	4829	5	FSM	ENSMUSG00000042686.6	ENSMUST00000038382.5	4809	5	-36	16	-36	-16	multi-exon	FALSE	canonical	2	13	junction_1	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGTTATTAATAAAATTGG	NA	False	NA	NA	False	AATAAA	-5	NA	17168149	17065177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_17067784_17074114_17074759_17086262_17086382_17161521_17162282_17167449
ES_00001224	chr1	-	243	1	FSM	ENSMUSG00000090142.3	ENSMUST00000160969.3	553	1	381	-71	381	71	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGCTTTTACATGCAGAA	NA	False	NA	NA	False	GATAAA	-45	NA	20514653	20514410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_20514400_20514700
ES_00001226	chr1	-	3436	16	FSM	ENSMUSG00000041859.11	ENSMUST00000185296.2	3431	16	0	-5	0	0	multi-exon	FALSE	canonical	3	2257	junction_10	187.277975213318	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890484	20873191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_20873879_20875040_20875132_20875486_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
ES_00001227	chr1	-	3031	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890536	20873191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
ES_00001229	chr1	-	776	4	Intergenic	novelGene_24	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_3	28.3901391331568	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTGACATGGCTTTGT	NA	False	NA	-15	True	ATTAAA	-7	NA	21326729	21323517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_21323669_21324392_21324563_21326110_21326225_21326388
ES_00001231	chr1	-	4833	7	FSM	ENSMUSG00000026158.12	ENSMUST00000027343.6	4844	7	0	11	0	-11	multi-exon	FALSE	canonical	3	39	junction_5	10.9201648339208	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCATTGTACCACGCCCT	NA	False	NA	NA	False	AATAAA	-32	NA	23422256	23405515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_23409530_23414810_23414957_23415068_23415136_23415251_23415331_23417806_23417886_23418052_23418140_23421895
ES_00001232	chr1	-	2379	10	FSM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	-86	-4	-86	4	multi-exon	FALSE	canonical	3	380	junction_6	35.0269737329517	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTGGGTTTTATTT	NA	False	NA	2	True	ATTAAA	-21	NA	23961484	23884701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_23885645_23887344_23887653_23888383_23888550_23892503_23892632_23898103_23898195_23905297_23905379_23915454_23915531_23916789_23916876_23930940_23931075_23961118
ES_00001233	chr1	-	976	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	26	-319	0	319	multi-exon	FALSE	canonical	3	315	junction_1	0.5	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTTCTGGGGCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	24044711	24034700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_24035442_24042237_24042388_24044626
ES_00001234	chr1	-	6249	22	NIC	ENSMUSG00000026153.16	novel	5536	21	NA	NA	0	47	combination_of_known_junctions	FALSE	canonical	3	22	junction_8	12.0657683733739	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGCCTGAATAACACTCC	NA	False	NA	42	True	NA	NA	NA	24139414	24050126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24139141
ES_00001240	chr1	-	1333	2	Genic_Genomic	ENSMUSG00000102070.2_ENSMUSG00000101249.2	novel	681	1	NA	NA	7	3670	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAGGAAGTAAGCCTCC	NA	False	NA	NA	False	AAAAAG	-2	NA	24655271	24650295	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_24650317_24653959
ES_00001243	chr1	-	345	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGGTAATTAGTTTAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	24652200	24651855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_24651900_24652200
ES_00001245	chr1	-	681	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTATGAAGCTAA	NA	False	NA	NA	False	ACTAAA	-32	NA	24654646	24653965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_24654000_24654600
ES_00001246	chr1	-	557	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	10	-75	10	75	mono-exon	FALSE	NA	NA	NA	NA	NA	466	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGTAAAATCAATTACATA	NA	False	NA	NA	False	NA	NA	NA	24655268	24654711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_24654700_24655300
ES_00001247	chr1	-	274	1	FSM	ENSMUSG00000086240.5	ENSMUST00000145844.3	274	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8891	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGATTTCCTCGACGTTG	NA	False	NA	NA	False	AATATA	-39	NA	28619853	28619579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_28619600_28619900
ES_00001253	chr1	-	2731	3	FSM	ENSMUSG00000048874.16	ENSMUST00000188780.2	941	3	-16	-1774	11	0	multi-exon	FALSE	canonical	3	35	junction_1	46.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGAATGGCTATTTTTC	NA	False	NA	-12	True	AATAAA	-13	NA	30912991	30868511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_30870641_30902067_30902337_30912658
ES_00001254	chr1	-	2678	4	NNC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	50.7564993101595	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTCTGAATGGAATGGC	NA	False	NA	-20	True	AATAAA	-5	NA	30912876	30868519	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_30870641_30876185_30876348_30902067_30902245_30912658
ES_00001258	chr1	-	2851	6	FSM	ENSMUSG00000117310.3	ENSMUST00000076587.6	2851	6	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_5	787.975024984929	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCCTTTTCCTAGTTCA	NA	False	NA	NA	False	AATAAA	-24	NA	30988838	30980660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985718_30988629
ES_00001261	chr1	-	812	3	FSM	ENSMUSG00000086727.9	ENSMUST00000135245.3	889	3	14	63	-13	-63	multi-exon	FALSE	canonical	1	2	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTTTATAACTTTATGG	NA	False	NA	NA	False	CATAAA	-40	NA	31261751	31242074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_31242470_31243332_31243555_31261556
ES_00001262	chr1	-	1171	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	241	2	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	107.409572788139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCAAGTGGGAGTCTT	8818	False	NA	0	True	AATAAA	-20	NA	33660982	33492888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33660914
ES_00001264	chr1	-	2502	1	FSM	ENSMUSG00000026134.12	ENSMUST00000187353.2	2447	1	491	-546	491	546	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTCAGGCTCCCCAGAAA	7886	False	NA	NA	False	NA	NA	NA	33661914	33659412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_33659400_33661900
ES_00001265	chr1	-	1761	4	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	32	junction_1	6.94422221866655	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796822	33784564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_33785206_33785250_33786098_33787297_33787408_33796659
ES_00001268	chr1	-	3958	15	FSM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	31.7753594690564	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGAAATTTTTTCTA	NA	False	NA	-2	True	AATAAA	-17	NA	33853608	33800625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
ES_00001269	chr1	-	11876	4	FSM	ENSMUSG00000042197.14	ENSMUST00000044455.8	11876	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	149.247743329301	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCTTTCTTTTTTT	NA	False	NA	4	True	TATAAA	-14	NA	33853651	33831216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_33842695_33844419_33844501_33852807_33852892_33853418
ES_00001271	chr1	-	2484	7	FSM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	0	3	0	-3	multi-exon	FALSE	canonical	3	24	junction_2	6.36832439151427	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGCACTTTCTTATGGTT	NA	False	NA	-1	True	AATAAA	-20	NA	33946897	33891135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521_33922730_33946646
ES_00001274	chr1	-	1065	6	NNC	ENSMUSG00000042111.10	novel	1705	5	NA	NA	314	40018	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	105.707899420999	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTACATCTGTTGATGA	7518	False	NA	NA	False	NA	NA	NA	34478439	34435732	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_34435759_34476102_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ES_00001275	chr1	-	1713	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	0	-8	0	8	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTATTTTCAGTGTAT	7204	False	NA	9	True	AATAAA	-31	NA	34478753	34475742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ES_00001276	chr1	-	1903	2	FSM	ENSMUSG00000042111.10	ENSMUST00000188583.2	1903	2	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCACAGAGCTCTCAT	8180	False	NA	-7	True	AATAAA	-15	NA	34477777	34475758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_34476692_34476807
ES_00001282	chr1	-	9033	41	FSM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_21	76.4630261956719	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTGCTTGTTCATTC	NA	False	NA	1	True	AATAAA	-20	NA	36283386	36179107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
ES_00001283	chr1	-	5554	40	NIC	ENSMUSG00000037470.15	novel	9033	41	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	115	junction_20	72.0100347306307	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTTTTTCTTCTTAC	NA	False	NA	-1	True	NA	NA	NA	36283386	36182562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
ES_00001290	chr1	-	2152	8	NIC	ENSMUSG00000001143.14	novel	705	6	NA	NA	12	1074	intron_retention	FALSE	canonical	3	24	junction_1	59.6068753738756	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGACCTTTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	36484326	36457877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_36459117_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ES_00001291	chr1	-	3373	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	5	0	5	0	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTTGTCAGAAGTG	NA	False	NA	NA	False	AATAGA	-13	NA	36484347	36461145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ES_00001293	chr1	-	2277	9	FSM	ENSMUSG00000067653.13	ENSMUST00000193083.6	2277	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	11.5697612334914	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTTGCCTCATGGGGA	NA	False	NA	NA	False	ATTAAA	-19	NA	36575602	36569268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371_36573519_36575577
ES_00001295	chr1	-	824	3	FSM	ENSMUSG00000067653.13	ENSMUST00000193991.3	663	3	-36	-125	-36	125	multi-exon	FALSE	canonical	3	25	junction_2	9	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCCAGACCCTTCCTATG	NA	False	NA	NA	False	NA	NA	NA	36576000	36572942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36573197_36573371_36573519_36575577
ES_00001296	chr1	-	2641	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	0	5	0	-5	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCCTAAAAAAAAAAAAAAA	7026	False	NA	NA	False	NA	NA	NA	36586300	36576592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
ES_00001297	chr1	-	2465	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	226	-582	0	-5	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCCTAAAAAAAAAAAAAAA	7026	False	NA	NA	False	NA	NA	NA	36586300	36576592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
ES_00001300	chr1	-	2354	16	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	46.2106288879758	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGTTCTGGAGTTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	36722215	36601778	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
ES_00001301	chr1	-	2280	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	0	6	0	-2	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGTTCTGGAGTTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	36722264	36601778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ES_00001302	chr1	-	1812	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	56	86	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGCCCGCCTTTCTTT	NA	False	NA	NA	False	AGTAAA	-37	NA	36722208	36638970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
ES_00001303	chr1	-	1659	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ES_00001304	chr1	-	3249	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	0	-1	0	1	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGAGTAAATATAGCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	36749089	36737193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
ES_00001305	chr1	-	356	4	FSM	ENSMUSG00000037351.10	ENSMUST00000162662.2	356	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	274.668284784878	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTGAGTTAAGAATTAGA	NA	False	NA	NA	False	NA	NA	NA	36749000	36745628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36745730_36745950_36746027_36747271_36747337_36748886
ES_00001306	chr1	-	6641	41	FSM	ENSMUSG00000026116.12	ENSMUST00000027290.12	6546	41	-101	6	-101	-3	multi-exon	FALSE	canonical	3	231	junction_29	35.4925256216009	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGAATTGTTTTGTTTT	7120	False	NA	-4	True	AATAAA	-19	NA	36978709	36831277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ES_00001307	chr1	-	6616	41	NNC	ENSMUSG00000026116.12	novel	6698	42	NA	NA	-78	-2	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_2	49.5943482163038	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAATTGTTTTGTTTTG	7143	False	NA	-3	True	AATAAA	-20	NA	36978686	36831276	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36832287_36833124_36833277_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ES_00001313	chr1	-	7003	15	FSM	ENSMUSG00000026110.16	ENSMUST00000154819.8	2796	15	169	-4376	0	0	multi-exon	FALSE	canonical	3	60	junction_13	42.1731126260729	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGGATAGAATTTTTTT	NA	False	NA	42	True	AATAAA	-16	NA	37575316	37478420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37483767_37483887_37484001_37488176_37488244_37489409_37489489_37491311_37491506_37491602_37491711_37493824_37493956_37495670_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535095_37537680_37537822_37575119
ES_00001314	chr1	-	7251	16	FSM	ENSMUSG00000026110.16	ENSMUST00000151952.8	7251	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_15	49.471158825679	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGGATAGAATTTTTTT	NA	False	NA	42	True	AATAAA	-16	NA	37580097	37478420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37483767_37483887_37484001_37488176_37488244_37489409_37489489_37491311_37491506_37491602_37491711_37493824_37493956_37495670_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535095_37537653_37537822_37575119_37575486_37580045
ES_00001316	chr1	-	327	2	FSM	ENSMUSG00000060771.16	ENSMUST00000134024.2	3133	2	2369	437	2369	-437	multi-exon	FALSE	canonical	3	21	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGCATATAAATACACAG	9941	False	NA	NA	False	NA	NA	NA	37880433	37879579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37879739_37880265
ES_00001319	chr1	-	5032	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	669	-4002	0	1797	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	38036305	38022472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
ES_00001320	chr1	-	2607	4	FSM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	0	-2	0	0	multi-exon	FALSE	canonical	3	675	junction_1	99.432836069826	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACATGTCTGTTTTTAA	NA	False	NA	-3	True	NA	NA	NA	38036305	38026474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38026861_38029283_38029539_38033072_38034923_38036189
ES_00001321	chr1	-	5979	4	FSM	ENSMUSG00000058407.13	ENSMUST00000193832.6	3472	4	-130	-2377	-58	172	multi-exon	FALSE	canonical	3	195	junction_3	348.930747665875	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAAACCAAAGATGTG	NA	False	NA	NA	False	AGTAAA	-9	NA	38036454	38024097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036244
ES_00001323	chr1	-	1447	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195032.6	1444	5	0	-3	0	0	multi-exon	FALSE	canonical	3	37	junction_4	367.038400579558	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTCTGTCTGTCTGTCTG	NA	False	NA	NA	False	TTTAAA	-5	NA	38036697	38026720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38035973
ES_00001328	chr1	-	777	6	FSM	ENSMUSG00000026082.12	ENSMUST00000193472.2	777	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	70.8564746512272	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAAGACAAGACCAAATG	5025	False	NA	NA	False	NA	NA	NA	38124735	38110463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38110579_38113395_38113525_38118370_38118477_38120239_38120440_38122784_38122902_38124625
ES_00001335	chr1	-	2736	3	FSM	ENSMUSG00000026080.15	ENSMUST00000195731.2	4280	3	0	1544	0	-1544	multi-exon	FALSE	canonical	1	1	junction_1	4	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTACATACTTTATACTG	NA	False	NA	NA	False	NA	NA	NA	38937091	38931257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38933753_38935017_38935138_38936970
ES_00001336	chr1	-	4445	20	FSM	ENSMUSG00000003134.11	ENSMUST00000054462.11	4451	20	6	0	6	0	multi-exon	TRUE	canonical	3	38	junction_12	7.9882184715386	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCACGTATTTCTAATT	NA	False	NA	NA	False	AATAAA	-20	NA	39517830	39410572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_39411868_39412807_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
ES_00001337	chr1	-	3516	19	FSM	ENSMUSG00000003134.11	ENSMUST00000193823.2	3512	19	0	-4	0	4	multi-exon	FALSE	canonical	3	38	junction_11	8.13011472441188	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGAACAGTGTGGCACT	NA	False	NA	NA	False	CATAAA	-23	NA	39517781	39412392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
ES_00001341	chr1	-	5388	12	FSM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	0	-3	0	3	multi-exon	FALSE	canonical	3	38	junction_11	7.4512187699077	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGTTTCCACAGATAC	9974	False	NA	44	True	AATAAA	-16	NA	43131889	43086376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43131540
ES_00001342	chr1	-	5590	13	FSM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	0	17	0	3	multi-exon	FALSE	canonical	3	11	junction_11	15.5393765068687	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGTTTCCACAGATAC	7783	False	NA	44	True	AATAAA	-16	NA	43137782	43086376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43136011_43136210_43137429
ES_00001345	chr1	-	4620	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGTAATGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	43866960	43786125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
ES_00001346	chr1	-	4638	15	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_13	52.099394802392	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTGGTAATGGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	43866965	43786127	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844850_43846509_43846538_43866774
ES_00001347	chr1	-	1921	15	FSM	ENSMUSG00000057363.13	ENSMUST00000076997.13	1921	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	53.8541113205153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGATTGACATCTGCTT	NA	False	NA	-2	True	AATAAA	-34	NA	43866901	43788671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829711_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
ES_00001354	chr1	-	1360	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	107.444125013888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCAGACTAATGTTC	NA	False	NA	NA	False	GATAAA	-28	NA	44141522	44125969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
ES_00001355	chr1	-	961	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	0	-1	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGTTGGTTAATTTGAT	NA	False	NA	NA	False	AATAAA	-2	NA	44141601	44126019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
ES_00001359	chr1	-	2359	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGGCCTCTGCCTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	44157968	44145705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ES_00001360	chr1	-	1767	9	FSM	ENSMUSG00000026047.14	ENSMUST00000027213.14	1765	9	0	-2	0	0	multi-exon	FALSE	canonical	1	5	junction_3	107.302653159183	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157925	44146044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ES_00001361	chr1	-	2140	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	-55	0	0	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157968	44146044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ES_00001362	chr1	-	570	1	FSM	ENSMUSG00000084817.4	ENSMUST00000153604.2	423	1	16	-163	16	163	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAATGCAAAAAGTGGCA	NA	False	NA	NA	False	AATAAA	-39	NA	45896898	45896328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_45896300_45896900
ES_00001364	chr1	-	5949	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	379	-830	379	830	multi-exon	FALSE	canonical	3	237	junction_4	21.0736509753792	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAACTGTTCATCACC	307	False	NA	NA	False	AATAAA	-22	NA	46892827	46845873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
ES_00001371	chr1	-	4767	31	FSM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_21	30.4396671028665	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCATTTGCTGGATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	51955087	51789152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
ES_00001374	chr1	-	4966	18	FSM	ENSMUSG00000026103.15	ENSMUST00000114513.9	4966	18	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.7225587298202	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGAAAAAGTGTTTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	52272382	52202606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52205474_52207494_52207559_52207643_52207721_52208055_52208118_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ES_00001375	chr1	-	8153	8	ISM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	28319	1176	-4431	0	3prime_fragment	FALSE	canonical	3	177	junction_1	21.4037952003749	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGTTTTTTTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	52244072	52224438	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013
ES_00001376	chr1	-	5434	15	FSM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	0	162	0	-162	multi-exon	FALSE	canonical	3	106	junction_8	52.7471829211992	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGCCATAAAGAACTAGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	52272391	52223424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ES_00001380	chr1	-	5784	6	FSM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	-29	12	-29	-12	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACCAATGTAAGATTAT	NA	False	NA	NA	False	NA	NA	NA	52856876	52824597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199_52836261_52838443_52838696_52856560
ES_00001381	chr1	-	3641	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	680	False	NA	-5	True	AATAAA	-14	NA	52992003	52961482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52964894_52991773
ES_00001387	chr1	-	2446	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	0	-4	0	4	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAATTTTTACCTTTCT	NA	False	NA	2	True	AATAAA	-45	NA	53391911	53383771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
ES_00001388	chr1	-	983	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_2	221.433872747599	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGGGTGTAGTAGTT	NA	False	NA	-30	True	AATAAA	-13	NA	53391911	53383803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
ES_00001389	chr1	-	3287	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	0	6	0	-6	multi-exon	TRUE	canonical	3	57	junction_1	6.25316246521123	2291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAGCTGCCTTAAGTTA	686	False	NA	NA	False	AATAAA	-20	NA	53824383	53794670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
ES_00001390	chr1	-	4582	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6700	False	NA	-6	True	AATAAA	-19	NA	54478130	54435162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
ES_00001395	chr1	-	3368	3	FSM	ENSMUSG00000025982.14	ENSMUST00000190175.2	3350	3	0	-18	0	14	multi-exon	FALSE	canonical	2	1032	junction_2	287.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTAATCTTAGTTGACT	NA	False	NA	5	True	AATAAA	-31	NA	55030274	55024313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_55026652_55027097_55027315_55029461
ES_00001396	chr1	-	6209	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	0	-14	0	14	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTAATCTTAGTTGACT	NA	False	NA	5	True	AATAAA	-31	NA	55066640	55024313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ES_00001397	chr1	-	4427	1	FSM	ENSMUSG00000025982.14	ENSMUST00000185429.2	3589	1	-1034	196	-1034	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTGCTTCTTAGTGAG	NA	False	NA	NA	False	AGTAAA	-17	NA	55032734	55028307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_55028300_55032700
ES_00001399	chr1	-	600	7	FSM	ENSMUSG00000025982.14	ENSMUST00000191303.2	600	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	678.357002044073	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAAAAAGCTAAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	55066553	55051410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_55051432_55053641_55053722_55054027_55054084_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ES_00001401	chr1	-	2423	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	0	0	0	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	1943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ES_00001407	chr1	-	3015	4	FSM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	-963	0	963	multi-exon	FALSE	canonical	3	14	junction_1	26.1576417557513	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTGCCAAATCTTAAC	NA	False	NA	NA	False	ATTAAA	-16	NA	57416703	57397417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_57399823_57401724_57401923_57414406_57414679_57416563
ES_00001408	chr1	-	979	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	2975	0	-2975	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTAAGATTATGGCTACA	NA	False	NA	NA	False	NA	NA	NA	57416703	57401355	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_57401923_57414406_57414679_57416563
ES_00001410	chr1	-	1849	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	0	-2	0	2	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGAGTGGCCGTCTTT	NA	False	NA	-13	True	AATAAA	-32	NA	57446260	57427393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
ES_00001412	chr1	-	2674	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	-25	-137	-25	-10	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTCAGAAGGTGGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	58009312	57994269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
ES_00001416	chr1	-	4529	11	FSM	ENSMUSG00000026034.18	ENSMUST00000156931.8	4865	11	0	336	0	-336	multi-exon	FALSE	canonical	3	126	junction_10	34.9097407609968	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGAGGTAGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	58463225	58449683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58460468_58460932_58461094_58463078
ES_00001418	chr1	-	1705	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ES_00001419	chr1	-	1796	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
ES_00001421	chr1	-	1585	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	258	-810	0	810	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAGCTTATTGTGTTG	NA	False	NA	NA	False	AATACA	-15	NA	58484335	58469342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ES_00001422	chr1	-	1377	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	0	-14	0	14	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAGATTTATTTAT	NA	False	NA	15	True	AATAGA	-42	NA	58484588	58470138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
ES_00001423	chr1	-	913	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	0	-17	0	14	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAGATTTATTTAT	NA	False	NA	15	True	AATAGA	-42	NA	58484645	58470138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
ES_00001424	chr1	-	1189	6	FSM	ENSMUSG00000026035.16	ENSMUST00000114345.9	1175	6	0	-14	0	14	multi-exon	FALSE	canonical	3	104	junction_5	38.958439393795	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTTTGGTTTTAACAA	NA	False	NA	NA	False	AATAAA	-30	NA	58484528	58472931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ES_00001426	chr1	-	3401	18	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	142	junction_17	104.64575272802	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544114	58501929	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541044_58543930
ES_00001427	chr1	-	3561	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544268	58501929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ES_00001430	chr1	-	8668	12	FSM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	17	0	-9	0	multi-exon	FALSE	canonical	3	17	junction_1	5.70486235990445	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTGAGTTGATTGTAT	NA	False	NA	1	True	TATAAA	-30	NA	58625465	58561964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
ES_00001432	chr1	-	1274	11	NNC	ENSMUSG00000038174.15	novel	421	5	NA	NA	0	-7483	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	8.71837140755084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGTGTATCTTAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	58625425	58575724	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_58575985_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
ES_00001433	chr1	-	6189	16	FSM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_7	7.62335592475883	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTGTGATTTT	1547	False	NA	0	True	AATAAA	-41	NA	59012589	58939607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
ES_00001434	chr1	-	6191	16	NNC	ENSMUSG00000026028.13	novel	6189	16	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	13.2839083940767	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCCTTGTGATTT	1538	False	NA	-1	True	AATAAA	-40	NA	59012598	58939608	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_58943342_58945864_58945971_58947687_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
ES_00001435	chr1	-	1845	14	NNC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	5	24451	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.6359949811868	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACAACTTTTTGGCC	4345	False	NA	NA	False	AGTAAA	-38	NA	59158960	59115297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_59115312_59139742_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
ES_00001436	chr1	-	1858	13	FSM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	5	-40	5	33	multi-exon	FALSE	canonical	0	0	junction_11	58.3887237020604	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCGCCAGTTATTTTCCT	4345	False	NA	23	True	TTTAAA	-2	NA	59158960	59139715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
ES_00001437	chr1	-	1901	13	FSM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	0	-32	0	32	multi-exon	FALSE	canonical	0	0	junction_11	71.220851737551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCGCCAGTTATTTTCC	4052	False	NA	22	True	AATACA	-45	NA	59159253	59139716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159110
ES_00001439	chr1	-	6342	34	FSM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	0	0	0	0	multi-exon	TRUE	canonical	2	89	junction_12	16.3968238094348	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTCTATGACTGTGGAA	NA	False	NA	2	True	AATAAA	-20	NA	59276390	59202084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
ES_00001442	chr1	-	2977	13	FSM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	0	0	0	0	multi-exon	FALSE	canonical	2	94	junction_2	9.94847838728226	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGGGCCCCATTAAGC	NA	False	NA	NA	False	NA	NA	NA	59276390	59230767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
ES_00001443	chr1	-	214	2	Intergenic	novelGene_71	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCTGGGAAACTTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	59271493	59235986	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_59236006_59271298
ES_00001445	chr1	-	2020	6	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	17871	575	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1547.09063729311	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	5735	False	NA	NA	False	NA	NA	NA	59692027	59625141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_59626050_59678592_59679428_59681576_59681649_59683675_59683754_59684299_59684330_59691930
ES_00001446	chr1	-	1241	6	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	0	-19086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1501.71635137931	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTTTTGCCTCCTTGTT	589	False	NA	NA	False	NA	NA	NA	59709993	59644802	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_59644832_59678595_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ES_00001448	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ES_00001452	chr1	-	10012	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	0	0	0	0	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTACTGATGTTTGCCTGC	NA	False	NA	NA	False	CATAAA	-13	NA	60137067	60108943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
ES_00001453	chr1	-	11703	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	-340	-8513	159	1430	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTTTAAAGTTGATTGG	NA	False	NA	NA	False	NA	NA	NA	60137645	60107513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
ES_00001454	chr1	-	3251	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137804	60116026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ES_00001457	chr1	-	2109	14	NIC	ENSMUSG00000026014.16	novel	2241	16	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	4.5573271518765	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTTAAAGCTTGTTG	NA	False	NA	-5	True	TTTAAA	-4	NA	60605897	60522343	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_60522500_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
ES_00001458	chr1	-	9910	14	FSM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	0	114	0	-114	multi-exon	FALSE	canonical	3	5	junction_1	7.94731170356426	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCACTCATGCATCTGAAT	NA	False	NA	NA	False	NA	NA	NA	60605938	60521564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60529481_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
ES_00001460	chr1	-	308	1	FSM	ENSMUSG00000081562.2	ENSMUST00000122243.2	228	1	-21	-59	-21	59	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGACAGGGGCATGAAG	4848	False	NA	NA	False	NA	NA	NA	60562246	60561938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60561900_60562200
ES_00001462	chr1	-	5474	1	Genic_Genomic	ENSMUSG00000040865.16	novel	NA	NA	NA	NA	10288	1	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTTTTATTAATTATTT	3566	False	NA	1	True	AATAAA	-18	NA	63092432	63086958	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_63087000_63092400
ES_00001463	chr1	-	2772	20	NIC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	123	junction_19	206.17340683078	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGTGTGAAGTTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	63215826	63182750	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
ES_00001464	chr1	-	2661	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
ES_00001465	chr1	-	882	3	FSM	ENSMUSG00000025968.17	ENSMUST00000187835.2	826	3	-37	-19	-37	11	multi-exon	FALSE	canonical	3	931	junction_1	15	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAAGTTTTTTTATTTT	NA	False	NA	NA	False	AATAAA	-42	NA	63186919	63182743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_63183082_63186278_63186352_63186448
ES_00001466	chr1	-	2596	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_19	199.298478811329	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215812	63182754	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
ES_00001467	chr1	-	2590	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTAAAGTTATACTAT	NA	False	NA	NA	False	NA	NA	NA	63215891	63182893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
ES_00001470	chr1	-	3116	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	-35	-1051	-35	1051	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	3574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTCTTTGCCCTTTG	NA	False	NA	NA	False	NA	NA	NA	64656436	64644580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ES_00001471	chr1	-	2645	3	FSM	ENSMUSG00000025956.11	ENSMUST00000053469.2	2666	3	28	-7	28	0	multi-exon	FALSE	canonical	3	51	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCAGTGTTGTCTTCTG	NA	False	NA	0	True	ATTAAA	-20	NA	64656299	64645631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_64647297_64654256_64654369_64655431
ES_00001475	chr1	-	8491	8	FSM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	76	-5	-21	5	multi-exon	FALSE	canonical	3	14	junction_5	6.03391773769796	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATATCAGCTTTATTTA	NA	False	NA	0	True	AATAAA	-20	NA	64995907	64828274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995853
ES_00001476	chr1	-	729	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	0	-75	0	75	mono-exon	FALSE	NA	NA	NA	NA	NA	1308	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCACCTTTTACAATAA	NA	False	NA	NA	False	NA	NA	NA	65033763	65033034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_65033000_65033800
ES_00001479	chr1	-	777	3	FSM	ENSMUSG00000025952.16	ENSMUST00000027089.15	783	3	0	6	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	1594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTTCTGTTATTCTT	688	False	NA	0	True	AATAAA	-26	NA	65112848	65110689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_65111031_65112320_65112564_65112655
ES_00001484	chr1	-	3930	12	NNC	ENSMUSG00000025950.17	novel	2302	9	NA	NA	-4	977	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	404.257118900605	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	65225663	65196797	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148_65218572_65218921_65218975_65220786_65220858_65225367
ES_00001485	chr1	-	2360	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	-19	-39	-19	39	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTCCTATTACTGTAA	NA	False	NA	33	True	AAAAAG	-11	NA	65218359	65197735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
ES_00001486	chr1	-	2339	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	-15	-41	6	39	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTCCTATTACTGTAA	NA	False	NA	33	True	AAAAAG	-11	NA	65225653	65197735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
ES_00001487	chr1	-	2269	9	NIC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	64	-5	combination_of_known_splicesites	FALSE	canonical	3	32	junction_8	301.348531604187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAAGTGTTTATTATGT	NA	False	NA	-13	True	ATTAAA	-21	NA	65225533	65197781	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225367
ES_00001490	chr1	-	2384	8	FSM	ENSMUSG00000026004.16	ENSMUST00000113987.2	2342	8	0	-42	0	42	multi-exon	FALSE	canonical	0	0	junction_7	4.70345075232981	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACATCCACACAGAGAAGC	6624	False	NA	NA	False	AATAAA	-37	NA	66856721	66774658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66774904_66777209_66777373_66801206_66801412_66812064_66812187_66812580_66812779_66817125_66817268_66840207_66841328_66856532
ES_00001492	chr1	-	881	1	FSM	ENSMUSG00000103756.2	ENSMUST00000194465.2	1139	1	212	46	212	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGGACATTCTCTTCCA	9952	False	NA	NA	False	NA	NA	NA	66839744	66838863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66838900_66839700
ES_00001493	chr1	-	1916	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCCTGGGGAATGAGA	NA	False	NA	-19	True	AATAAA	-29	NA	66902436	66869997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
ES_00001494	chr1	-	208	1	FSM	ENSMUSG00000082769.4	ENSMUST00000121857.2	495	1	274	13	274	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCCCAGATAGTTAAGAAG	NA	False	NA	NA	False	NA	NA	NA	66888487	66888279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66888300_66888500
ES_00001496	chr1	-	4273	10	FSM	ENSMUSG00000026000.17	ENSMUST00000027149.12	4270	10	0	-3	0	3	multi-exon	FALSE	canonical	3	56	junction_9	152.892845556037	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTACTGTTGTTTGCTT	NA	False	NA	1	True	AATAAA	-20	NA	67078024	67039672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077934
ES_00001497	chr1	-	4464	9	FSM	ENSMUSG00000026000.17	ENSMUST00000113979.10	4461	9	0	-3	0	3	multi-exon	FALSE	canonical	3	327	junction_5	113.959902487673	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTACTGTTGTTTGCTT	NA	False	NA	1	True	AATAAA	-20	NA	67078031	67039672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
ES_00001498	chr1	-	1379	10	NIC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	146.548774167089	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078017	67042533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077960
ES_00001499	chr1	-	462	1	FSM	ENSMUSG00000026000.17	ENSMUST00000189210.2	2610	1	2236	-88	1083	88	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGCTAGGAGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	67059141	67058679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_67058700_67059100
ES_00001500	chr1	-	5683	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	-24	0	-24	0	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGAGACTCAACCTGA	NA	False	NA	32	True	NA	NA	NA	71142329	71066656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
ES_00001502	chr1	-	8041	47	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	295	76985	intron_retention	TRUE	non_canonical	0	0	junction_1	467.351591841705	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGGTAGCTTAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	71692025	71547693	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_71547727_71624680_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00001503	chr1	-	8043	45	FSM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_21	441.858289425336	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGACGTCATTTCTTTT	NA	False	NA	-6	True	AATAAA	-18	NA	71692331	71624678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00001504	chr1	-	7680	45	FSM	ENSMUSG00000026193.16	ENSMUST00000188674.7	7680	45	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	516.089688054027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	71692331	71624681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636547_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00001505	chr1	-	8319	46	FSM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	0	-4	0	0	multi-exon	FALSE	canonical	3	1514	junction_37	371.719226311845	1288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGACGTCATTTCTTTT	NA	False	NA	-6	True	AATAAA	-18	NA	71692334	71624678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00001506	chr1	-	2284	5	FSM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	58.0215477215146	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTACTGTTTTAATCTC	4222	False	NA	-40	True	AATAAA	-23	NA	72251466	72198600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_72200179_72201480_72201645_72203230_72203322_72231201_72231362_72251175
ES_00001507	chr1	-	1188	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	0	-2	0	2	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTATCTTTTAAGGATTAT	NA	False	NA	-4	True	AATAAA	-21	NA	72323473	72298328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
ES_00001508	chr1	-	9907	33	FSM	ENSMUSG00000055322.17	ENSMUST00000191104.7	9904	33	0	-3	0	2	multi-exon	FALSE	canonical	3	25	junction_32	13.8921276605673	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCCTGGCTTCGTTTGG	NA	False	NA	0	True	TATAAA	-25	NA	74163608	73949387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74163450
ES_00001509	chr1	-	4836	12	NIC	ENSMUSG00000055322.17	novel	2813	12	NA	NA	0	-1652	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	24.3677065799583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTTTTGTGAATGATCT	NA	False	NA	NA	False	TTTAAA	-21	NA	73969970	73951042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73969921
ES_00001512	chr1	-	1758	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	-2	0	2	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGTCTGTGTGCATTT	NA	False	NA	-3	True	AATAAA	-15	NA	74323839	74319002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
ES_00001513	chr1	-	1817	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	0	0	0	0	multi-exon	FALSE	canonical	3	1233	junction_8	50.6802722960325	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGTGCATTTTGTG	NA	False	NA	1	True	AATAAA	-19	NA	74323897	74318998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
ES_00001514	chr1	-	2402	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	0	-24	0	24	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCTAAGGTGGGAACCCA	NA	False	NA	18	True	NA	NA	NA	74343564	74327381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
ES_00001516	chr1	-	7160	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	3	147	junction_23	24.5588861491903	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGTTTGATTTATTTGT	NA	False	NA	0	True	ATTAAA	-17	NA	74544944	74474668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ES_00001517	chr1	-	7333	26	NIC	ENSMUSG00000033364.14	novel	7111	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_24	59.3845232362777	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAGTTTGATTTATTTG	NA	False	NA	-1	True	ATTAAA	-16	NA	74544962	74474669	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74535095_74535252_74539114_74539260_74544818
ES_00001518	chr1	-	7112	24	FSM	ENSMUSG00000033364.14	ENSMUST00000044260.11	7111	24	0	-1	0	1	multi-exon	FALSE	canonical	3	36	junction_8	42.9588980155981	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGTTTGATTTATTTGT	NA	False	NA	0	True	ATTAAA	-17	NA	74544962	74474668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ES_00001521	chr1	-	6634	9	FSM	ENSMUSG00000026135.18	ENSMUST00000027315.14	6480	9	-154	0	16	0	multi-exon	FALSE	canonical	3	25	junction_7	11.659223816361	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTATGGTTCCTAGGTTG	NA	False	NA	14	True	NA	NA	NA	74627338	74605584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722
ES_00001523	chr1	-	6236	10	NIC	ENSMUSG00000026135.18	novel	6480	9	NA	NA	0	-15	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	14.8457085290125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGGATCCCTGTCCT	NA	False	NA	-1	True	NA	NA	NA	74627184	74605599	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722_74626911_74627139
ES_00001524	chr1	-	1456	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	-5	0	0	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	False	NA	NA	False	AATAAA	-30	NA	74640536	74632906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ES_00001529	chr1	-	1485	9	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-20	-215	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	10.6183802907977	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	-8	True	AATAAA	-17	NA	75101864	75006512	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75097876_75097971_75101779
ES_00001531	chr1	-	2061	8	FSM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	0	1	0	-1	multi-exon	FALSE	canonical	3	148	junction_4	12.6426553656215	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGCCTTTTCCTTCTG	6906	False	NA	-14	True	AATAAA	-16	NA	75118335	75112412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059
ES_00001533	chr1	-	2432	10	FSM	ENSMUSG00000033159.15	ENSMUST00000041213.12	2429	10	0	-3	0	0	multi-exon	TRUE	canonical	3	17	junction_9	47.8820567438857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTTTTCCTTCTGT	9308	False	NA	-13	True	AATAAA	-17	NA	75119341	75112411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701_75119205_75119286
ES_00001535	chr1	-	3930	16	FSM	ENSMUSG00000033124.17	ENSMUST00000189702.7	4110	16	180	0	-21	0	multi-exon	FALSE	canonical	3	11	junction_15	11.6714276000077	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCATCTTTTTTTTTC	NA	False	NA	4	True	AATAAA	-19	NA	75168390	75157503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168130
ES_00001536	chr1	-	4046	16	FSM	ENSMUSG00000033124.17	ENSMUST00000188347.7	4041	16	0	-5	0	0	multi-exon	FALSE	canonical	3	15	junction_15	10.8226100774669	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCATCTTTTTTTTTC	NA	False	NA	4	True	AATAAA	-19	NA	75168840	75157503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167525_75168467
ES_00001538	chr1	-	2840	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATTCTCCTTTTTATGT	NA	False	NA	NA	False	AATATA	-16	NA	75195938	75190871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
ES_00001540	chr1	-	686	3	FSM	ENSMUSG00000026202.14	ENSMUST00000186758.7	782	3	96	0	96	0	multi-exon	FALSE	canonical	3	4	junction_2	122	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCAGTGCTGGACCGGAT	NA	False	NA	NA	False	NA	NA	NA	75196413	75193500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75193620_75193855_75194079_75196069
ES_00001541	chr1	-	2534	15	FSM	ENSMUSG00000026209.16	ENSMUST00000185797.7	2510	15	0	-24	0	24	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAGCCTGGGTATTGAT	NA	False	NA	NA	False	TATAAA	-39	NA	75294303	75284515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ES_00001542	chr1	-	2833	14	FSM	ENSMUSG00000026209.16	ENSMUST00000185419.7	2833	14	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_13	192.021017094268	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACCATTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	75293637	75284583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
ES_00001543	chr1	-	2196	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	0	-625	0	0	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACCATTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	75293589	75284583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
ES_00001544	chr1	-	2487	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	0	-625	0	0	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACCATTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	75293793	75284583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
ES_00001545	chr1	-	408	3	FSM	ENSMUSG00000026209.16	ENSMUST00000189282.3	408	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	420	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAGAAAACAAGGTACTAA	NA	False	NA	NA	False	NA	NA	NA	75294026	75293197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75293274_75293353_75293448_75293788
ES_00001547	chr1	-	3383	9	FSM	ENSMUSG00000026211.19	ENSMUST00000113565.3	3379	9	0	-4	0	4	multi-exon	FALSE	canonical	3	16	junction_1	8.70254991367473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTAAATAAGTTCAATTAG	NA	False	NA	NA	False	AATAAA	-30	NA	75483005	75472975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75473269_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
ES_00001549	chr1	-	2362	5	FSM	ENSMUSG00000026211.19	ENSMUST00000145306.2	2649	5	0	287	0	-287	multi-exon	FALSE	canonical	3	36	junction_2	2.12132034355964	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTAACTGGTGGACACC	NA	False	NA	NA	False	NA	NA	NA	75483096	75478602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
ES_00001553	chr1	-	2091	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	102	-242	0	242	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATCAGTATGACCAAGC	NA	False	NA	NA	False	AATAAA	-21	NA	78465432	78401462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ES_00001554	chr1	-	1818	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	0	-17	0	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCAGCGTGTGGAACA	NA	False	NA	15	True	AATAAA	-36	NA	78465499	78401704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
ES_00001557	chr1	-	424	1	FSM	ENSMUSG00000099377.2	ENSMUST00000191249.2	1724	1	1384	-84	1384	84	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATCTTTAAGTAGCAGT	NA	False	NA	NA	False	NA	NA	NA	78761192	78760768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_78760800_78761200
ES_00001558	chr1	-	745	1	FSM	ENSMUSG00000072978.4	ENSMUST00000049117.7	443	1	-20	-282	-20	282	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAACTGTGAACAGACACG	NA	False	NA	NA	False	NA	NA	NA	78945816	78945071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_78945100_78945800
ES_00001561	chr1	-	5615	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113513.8	4551	12	-120	-944	-120	944	multi-exon	FALSE	canonical	3	564	junction_7	59.9757526763184	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAATCTAATCTAC	NA	False	NA	NA	False	NA	NA	NA	79739606	79679034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79694919_79695033_79696840_79696992_79699930_79699986_79711516_79711591_79717778_79717847_79739280
ES_00001562	chr1	-	4551	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAATTTTGTTTGCT	NA	False	NA	0	True	AATAAA	-23	NA	79739486	79679978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ES_00001563	chr1	-	4551	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113515.8	4551	12	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_7	60.8834410035254	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAATTTTGTTTGCT	NA	False	NA	0	True	AATAAA	-23	NA	79739486	79679978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79694919_79695033_79696840_79696992_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ES_00001565	chr1	-	704	5	FSM	ENSMUSG00000073643.12	ENSMUST00000113510.8	704	5	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	85.2243363130509	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTGTGAGAACTGTTAA	NA	False	NA	NA	False	CATAAA	-5	NA	79739486	79696690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79696992_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ES_00001566	chr1	-	856	5	FSM	ENSMUSG00000073643.12	ENSMUST00000048820.14	717	5	-96	-43	-96	43	multi-exon	FALSE	canonical	3	590	junction_1	81.1984451821585	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCTTCATTCCTATCAT	NA	False	NA	NA	False	NA	NA	NA	79739582	79704076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ES_00001567	chr1	-	2076	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	50	84	-11	-84	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTACTGGTCTGTACTCT	NA	False	NA	35	True	NA	NA	NA	79836363	79771997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
ES_00001568	chr1	-	1234	1	FSM	ENSMUSG00000067106.7	ENSMUST00000165691.3	891	1	-81	-262	-81	262	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGTCTAGAAGACAAAGGC	NA	False	NA	NA	False	AATAAA	-31	NA	79901224	79899990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79900000_79901200
ES_00001569	chr1	-	5134	16	FSM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	-290	-135	-290	135	multi-exon	FALSE	canonical	3	483	junction_14	55.1621448297854	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGTAGCGCTGACGTT	NA	False	NA	NA	False	NA	NA	NA	80318487	80242504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300575_80300774_80317962
ES_00001571	chr1	-	1550	6	FSM	ENSMUSG00000038496.17	ENSMUST00000164473.2	1550	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	2.92574776766556	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAATGGGCAGGATTT	NA	False	NA	NA	False	NA	NA	NA	83016152	82991520	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83016090
ES_00001573	chr1	-	598	3	FSM	ENSMUSG00000045658.17	ENSMUST00000176720.2	450	3	-188	40	0	-40	multi-exon	FALSE	canonical	3	16	junction_1	16	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAGGTTTATTTATAAA	474	False	NA	NA	False	NA	NA	NA	84262332	84058339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84058520_84136952_84137100_84262061
ES_00001574	chr1	-	1442	1	FSM	ENSMUSG00000045658.17	ENSMUST00000187992.2	1431	1	-16	5	6	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCACCAAAAAAAAAAAAAAA	446	False	NA	NA	False	NA	NA	NA	84262360	84260918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84260900_84262400
ES_00001575	chr1	-	3627	13	FSM	ENSMUSG00000036766.13	ENSMUST00000049126.13	3632	13	4	1	4	-1	multi-exon	FALSE	canonical	1	6	junction_12	3.60169713082905	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTTGTCTCATTCTTTA	NA	False	NA	0	True	AATAAA	-18	NA	84673938	84347560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84673173
ES_00001578	chr1	-	9590	41	FSM	ENSMUSG00000026219.15	ENSMUST00000186465.7	9590	41	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_40	239.212613327558	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTACTTTATGTACA	6682	False	NA	-8	True	AATAAA	-22	NA	84818237	84698909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84818203
ES_00001579	chr1	-	2847	18	FSM	ENSMUSG00000026219.15	ENSMUST00000189670.7	2847	18	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_16	283.0431148152	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCTTCCAAAGACAACTC	NA	False	NA	17	True	NA	NA	NA	84726998	84701984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722892_84724898_84725051_84726878
ES_00001580	chr1	-	9606	41	NIC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-5	0	combination_of_known_junctions	TRUE	canonical	3	104	junction_16	245.45286716598	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTACTTTATGTACA	7905	False	NA	-8	True	AATAAA	-22	NA	84817014	84698909	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722892_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
ES_00001581	chr1	-	6585	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9508	-40	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_41	270.908748968537	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGCTGTGTGTATCCA	NA	False	NA	-23	True	AATAAA	-19	NA	84827745	84702024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84822070_84822113_84827643
ES_00001585	chr1	-	4170	25	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-435	0	at_least_one_novel_splicesite	FALSE	canonical	3	176	junction_22	168.905607268281	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGATAGTGCTCATG	7452	False	NA	NA	False	NA	NA	NA	84817467	84726878	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84816949
ES_00001587	chr1	-	1392	6	FSM	ENSMUSG00000026219.15	ENSMUST00000189496.7	1392	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	265.372643654164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATACTGACTGGCACTTAA	7897	False	NA	NA	False	AGTAAA	-45	NA	84817022	84760547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84816949
ES_00001590	chr1	-	202	1	FSM	ENSMUSG00000104503.2	ENSMUST00000192396.2	4716	1	4263	251	4263	-251	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTATTTCTACTTTCCC	NA	False	NA	NA	False	NA	NA	NA	84798141	84797939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_84797900_84798100
ES_00001593	chr1	-	8202	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	0	0	0	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATCTGGGTGTTTGGTTT	NA	False	NA	NA	False	AGTAAA	-7	NA	86287122	86272440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ES_00001594	chr1	-	3072	12	FSM	ENSMUSG00000026234.13	ENSMUST00000185676.7	3072	12	0	0	0	0	multi-exon	FALSE	canonical	3	5685	junction_11	703.281070741144	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	-28	True	AGTAAA	-16	NA	86287086	86278216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ES_00001595	chr1	-	1054	3	FSM	ENSMUSG00000026234.13	ENSMUST00000186050.2	1054	3	0	0	0	0	multi-exon	FALSE	canonical	3	7412	junction_1	350.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTACCTGTTCAATG	NA	False	NA	-38	True	AAGAAA	-17	NA	86279785	86278285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_86278419_86278533_86278758_86279088
ES_00001596	chr1	-	1145	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	0	14	0	-14	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATCTCCTTTATGTC	NA	False	NA	3	True	ATTAAA	-29	NA	86510269	86470729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
ES_00001600	chr1	-	213	1	Intergenic	novelGene_100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCCAGAAAGCAACCCAACA	NA	False	NA	NA	False	AAAAAG	-5	NA	87770361	87770148	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_87770100_87770400
ES_00001601	chr1	-	3977	32	FSM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_30	6.87528260700014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCAAACAAGTGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	87936256	87874164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
ES_00001603	chr1	-	1023	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	31	-3	31	3	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTTATGTTCTAGTGC	NA	False	NA	NA	False	ATTAAA	-18	NA	88133473	88132450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_88132400_88133500
ES_00001604	chr1	-	4213	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	0	3384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.33431590427	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCACCTGGCTGTGGAGG	8645	False	NA	NA	False	NA	NA	NA	88205301	88186808	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_88186836_88190830_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ES_00001606	chr1	-	4266	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	0	3384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.33431590427	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCACCTGGCTGTGGAGG	8591	False	NA	NA	False	NA	NA	NA	88205355	88186808	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_88186835_88190830_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ES_00001607	chr1	-	4899	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	0	-21	0	21	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTTGAGGTTTCTTT	8591	False	NA	NA	False	AATAAA	-45	NA	88205355	88190171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ES_00001609	chr1	-	2780	2	FSM	ENSMUSG00000044783.17	ENSMUST00000126739.2	2780	2	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8645	False	NA	NA	False	AAGAAA	-10	NA	88205301	88202433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_88205008_88205095
ES_00001610	chr1	-	3971	1	FSM	ENSMUSG00000049866.13	ENSMUST00000159814.2	3997	1	26	0	26	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGGAGGCGTTTTCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	88629917	88625946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_88625900_88629900
ES_00001611	chr1	-	221	2	Antisense	novelGene_ENSMUSG00000092627.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGTGGTCGTCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	89874724	89831381	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_89831546_89874667
ES_00001613	chr1	-	2059	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	4	-3	3	0	multi-exon	FALSE	canonical	3	59	junction_8	12	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAATTTGGTCACTGG	NA	False	NA	-1	True	AATAAA	-20	NA	90017862	89969853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ES_00001614	chr1	-	1538	12	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-15	141	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	124.787157635487	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTTGGGGAAGTGGGGC	NA	False	NA	NA	False	NA	NA	NA	91326552	91303411	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316169_91318328_91318386_91318853_91318920_91326372
ES_00001615	chr1	-	2353	11	FSM	ENSMUSG00000026309.15	ENSMUST00000187105.7	2342	11	0	-11	0	10	multi-exon	FALSE	canonical	3	426	junction_8	35.8725521812987	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGGTCCTGAGTTAACT	NA	False	NA	2	True	AATAAA	-28	NA	91326477	91303542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91316187_91318328_91318386_91318853_91318920_91326372
ES_00001618	chr1	-	1574	3	FSM	ENSMUSG00000067071.9	ENSMUST00000126136.8	1573	3	0	-1	0	1	multi-exon	FALSE	canonical	3	120	junction_1	9	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTGTCCAATGTGTGA	NA	False	NA	0	True	AATAAA	-36	NA	91340944	91339203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_91340525_91340614_91340702_91340778
ES_00001620	chr1	-	8100	27	FSM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_26	29.6698799314714	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCTACCTCCTTGTGT	6554	False	NA	0	True	AATAAA	-23	NA	92108063	91856500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107979
ES_00001621	chr1	-	4349	27	NNC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_11	23.5064198709189	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6598	False	NA	NA	False	AAGAAA	-10	NA	92108019	91860478	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909990_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107723
ES_00001624	chr1	-	1983	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	38	-1	38	1	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGGTAGCACTGGGCT	NA	False	NA	2	True	NA	NA	NA	92401544	92366730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ES_00001626	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	1	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_92565126_92567408_92567482_92569601
ES_00001627	chr1	-	711	3	FSM	ENSMUSG00000073616.11	ENSMUST00000148508.2	649	3	-62	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	285.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_92565126_92567408_92567482_92569328
ES_00001629	chr1	-	1366	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233637	93228926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
ES_00001630	chr1	-	1525	3	FSM	ENSMUSG00000026273.14	ENSMUST00000112942.2	1525	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTATTCTACCATTTCT	NA	False	NA	NA	False	CATAAA	-21	NA	93233586	93229638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93230625_93232329_93232829_93233546
ES_00001631	chr1	-	1677	2	FSM	ENSMUSG00000026273.14	ENSMUST00000152307.2	1664	2	0	-13	0	13	multi-exon	FALSE	canonical	3	72	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTTATAATTGTGTGT	NA	False	NA	NA	False	AATACA	-28	NA	93233601	93231206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93232829_93233546
ES_00001632	chr1	-	5787	18	FSM	ENSMUSG00000026274.12	ENSMUST00000027493.4	5779	18	0	-8	0	0	multi-exon	FALSE	canonical	3	108	junction_17	39.6765468974106	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	93270511	93236491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270247
ES_00001633	chr1	-	5646	18	NIC	ENSMUSG00000026274.12	novel	5779	18	NA	NA	136	59	combination_of_known_junctions	FALSE	canonical	3	33	junction_17	48.1779429495616	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCCTTATGAGTGTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	93271051	93236432	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270987
ES_00001634	chr1	-	6264	29	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	0	60963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.182084813312	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAAAAGACATAGGCCAT	NA	False	NA	NA	False	NA	NA	NA	93406523	93272698	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_93272734_93333663_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
ES_00001637	chr1	-	4249	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_7	20.1461601451751	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAGACAGCACTTACAA	NA	False	NA	NA	False	AATAAA	-13	NA	93563444	93547472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ES_00001638	chr1	-	2821	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_5	14.8354305633507	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGTACAGAGCCTGGC	NA	False	NA	-36	True	AATAAA	-19	NA	93563351	93549623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ES_00001639	chr1	-	2103	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	0	3455	0	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	-1	True	AATAAA	-38	NA	93682502	93633111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
ES_00001641	chr1	-	1003	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2310	False	NA	-20	True	AATAAA	-24	NA	93729656	93720297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
ES_00001642	chr1	-	1040	3	FSM	ENSMUSG00000026281.16	ENSMUST00000112893.2	1040	3	0	0	0	0	multi-exon	FALSE	canonical	3	1366	junction_2	100	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCCTCTCATAACCTGAG	5243	False	NA	NA	False	NA	NA	NA	93726723	93720445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93720666_93722447_93722646_93726101
ES_00001643	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	3	2511	junction_1	0	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	2338	False	NA	NA	False	NA	NA	NA	93729628	93727786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93728633_93729419
ES_00001646	chr1	-	1415	2	Intergenic	novelGene_114	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGGGGCAGGTAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	95759853	95729538	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_95729571_95758470
ES_00001648	chr1	-	4910	13	FSM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_9	6.53781733880318	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTATTACTCTTTATT	NA	False	NA	NA	False	ATTAAA	-20	NA	96799896	96743992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_96746833_96748907_96749046_96751421_96751487_96756515_96756701_96759710_96759865_96764604_96764801_96765178_96765324_96766891_96767011_96768854_96768977_96770178_96770276_96772200_96772381_96795449_96795714_96799491
ES_00001649	chr1	-	19393	3	FSM	ENSMUSG00000044768.17	ENSMUST00000053033.14	40378	3	54	20931	54	16654	multi-exon	FALSE	canonical	3	49	junction_2	5.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGCGCTTCATCTCCA	NA	False	NA	NA	False	NA	NA	NA	97589745	97554973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97574087_97582324_97582415_97589555
ES_00001650	chr1	-	5697	30	NNC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	371	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	78.9270347429667	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTATTGTCCTCTGCC	9205	False	NA	87	True	AATAAA	-24	NA	97697765	97633763	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_97635553_97639447_97639574_97640728_97640870_97644266_97644330_97645166_97645287_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668668_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ES_00001651	chr1	-	5972	28	FSM	ENSMUSG00000040648.16	ENSMUST00000042509.13	5882	28	-85	-5	-85	5	multi-exon	FALSE	canonical	0	0	junction_16	45.2326708589218	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCAGTGTATTGTCCTC	8749	False	NA	83	True	AATAAA	-20	NA	97698221	97633767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ES_00001652	chr1	-	5398	27	NIC	ENSMUSG00000040648.16	novel	5882	28	NA	NA	398	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	58.0792281763638	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCAGTGTATTGTCCTC	9232	False	NA	83	True	AATAAA	-20	NA	97697738	97633767	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97686893_97687090_97689149_97689547_97697579
ES_00001653	chr1	-	5618	29	NIC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	330	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	66.5348899573198	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATAGCAGTGTATTGTCC	9164	False	NA	81	True	AATAAA	-18	NA	97697806	97633769	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97644266_97644330_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ES_00001654	chr1	-	3861	28	NIC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	375	-1490	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	71.5843244061566	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCAGTGATATTTGTGAAT	9209	False	NA	NA	False	AATAAA	-37	NA	97697761	97640648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_97640870_97644266_97644330_97645166_97645287_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ES_00001657	chr1	-	859	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	-113	-257	-113	257	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGTAAATTCATGAGACA	8430	False	NA	NA	False	AATAAA	-35	NA	97877227	97876368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97876400_97877200
ES_00001658	chr1	-	912	1	FSM	ENSMUSG00000082431.4	ENSMUST00000117372.2	597	1	-71	-244	-71	244	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-31	NA	99718821	99717909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_99717900_99718800
ES_00001663	chr1	-	465	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	6	0	6	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGATTTTAAAACAGCC	NA	False	NA	NA	False	NA	NA	NA	105918006	105907079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_105907355_105916748_105916834_105917901
ES_00001664	chr1	-	5689	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	28	-199	0	199	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGGGGTGGGGGTAAAC	8289	False	NA	NA	False	NA	NA	NA	106687429	106647989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
ES_00001665	chr1	-	4633	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	0	0	0	0	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTATGTTTTTCGTG	24	False	NA	NA	False	ATTAAA	-5	NA	106724458	106697159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ES_00001672	chr1	-	7049	14	FSM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	-412	0	-412	0	multi-exon	FALSE	canonical	3	89	junction_11	11.3908506833309	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTTGTTGATCTGCTT	817	False	NA	-3	True	ATTAAA	-17	NA	118981761	118761861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118929769_118929937_118981031
ES_00001673	chr1	-	6530	13	NIC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	3	2	combination_of_known_junctions	FALSE	canonical	1	7	junction_11	30.4743744808651	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTGTTGATCTGCTTTT	1232	False	NA	-1	True	ATTAAA	-19	NA	118981346	118761859	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118929769_118929937_118981031
ES_00001676	chr1	-	4257	2	FSM	ENSMUSG00000037035.6	ENSMUST00000038765.6	4255	2	0	-2	0	2	multi-exon	FALSE	canonical	3	45	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGCCTTGTGTGATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	119349978	119343192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119345828_119348356
ES_00001678	chr1	-	2286	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	3	0	3	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432521	119398034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ES_00001680	chr1	-	6452	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	0	-10	0	10	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGCTGTTTCTTGAGCA	NA	False	NA	-1	True	AATAAA	-23	NA	119576666	119472756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ES_00001685	chr1	-	1180	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	1	130	1	-130	multi-exon	FALSE	canonical	3	40	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTCCTACGGTGTTTTC	NA	False	NA	NA	False	ATTAAA	-35	NA	120001803	119995236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119996055_120001441
ES_00001686	chr1	-	568	5	NNC	ENSMUSG00000026385.17	novel	569	4	NA	NA	0	19440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1187.65091146347	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAACCAAAAGATACCAG	NA	False	NA	NA	False	NA	NA	NA	120048777	120021569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_120021610_120041019_120041264_120044115_120044179_120047624_120047743_120048674
ES_00001687	chr1	-	570	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	-1	0	1	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTTGTCTGGGTGCGTG	NA	False	NA	0	True	ATTAAA	-30	NA	120048808	120041008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
ES_00001690	chr1	-	2831	5	ISM	ENSMUSG00000026389.17	ENSMUST00000112643.2	2873	6	2449	-230	167	0	3prime_fragment	FALSE	canonical	3	10	junction_4	16.3554272337961	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAATAGTTAAAATTGT	NA	False	NA	-21	True	NA	NA	NA	120197986	120154152	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120197854
ES_00001691	chr1	-	2697	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255753	121232081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ES_00001693	chr1	-	2274	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	0	-16	0	16	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTTGGCATATTCCTGA	NA	False	NA	0	True	CATAAA	-39	NA	121495718	121481547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
ES_00001694	chr1	-	445	3	FSM	ENSMUSG00000001674.12	ENSMUST00000131471.2	451	3	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_2	295.5	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCGAAAACTGAAGAAAG	NA	False	NA	NA	False	TATAAA	-41	NA	121495445	121492324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_121492333_121493609_121493898_121495296
ES_00001695	chr1	-	2566	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	0	-1	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363284	125320641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ES_00001696	chr1	-	2554	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363464	125320641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
ES_00001700	chr1	-	1823	8	FSM	ENSMUSG00000026347.14	ENSMUST00000185560.2	3488	8	1592	73	65	-73	multi-exon	FALSE	canonical	2	4	junction_7	2.65729646253404	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACCCAGGAGCCATTT	NA	False	NA	NA	False	NA	NA	NA	127605693	127418707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_127419398_127423454_127423597_127427920_127428033_127447081_127447179_127479062_127479155_127480497_127480542_127596387_127596508_127605167
ES_00001701	chr1	-	436	2	FSM	ENSMUSG00000102014.2	ENSMUST00000188163.2	465	2	0	29	0	-29	multi-exon	FALSE	canonical	3	3	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCTTGAAAAAATAAAAAAG	NA	False	NA	NA	False	TATAAA	-24	NA	127701791	127681381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_127681691_127701664
ES_00001704	chr1	-	4183	20	NIC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_18	45.8399600682436	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030191	127881920	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_128019579_128019748_128029989
ES_00001705	chr1	-	1868	13	FSM	ENSMUSG00000036086.17	ENSMUST00000097597.7	1913	13	46	-1	0	1	multi-exon	FALSE	canonical	1	6	junction_12	65.8438282773885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATATGTGTGATTGGTGC	NA	False	NA	NA	False	AATAAA	-16	NA	128030738	127914845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030704
ES_00001706	chr1	-	332	3	FSM	ENSMUSG00000026354.9	ENSMUST00000162067.2	620	3	259	29	259	-29	multi-exon	FALSE	canonical	1	2	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCTAATTTATGTCACAG	NA	False	NA	NA	False	NA	NA	NA	128219742	128215337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_128215452_128216687_128216823_128219659
ES_00001707	chr1	-	2910	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287401	128259326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ES_00001708	chr1	-	4355	16	FSM	ENSMUSG00000026355.12	ENSMUST00000190495.2	4355	16	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_5	205.687940552889	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	-24	True	AATAAA	-14	NA	128287384	128259329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ES_00001711	chr1	-	1607	1	FSM	ENSMUSG00000100078.2	ENSMUST00000187672.2	1388	1	-55	-164	-55	164	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	128449252	128447645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_128447600_128449300
ES_00001712	chr1	-	804	1	FSM	ENSMUSG00000089648.2	ENSMUST00000161109.2	1251	1	444	3	444	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCGTTTACAGACTTGTT	NA	False	NA	NA	False	NA	NA	NA	129725151	129724347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_129724300_129725200
ES_00001717	chr1	-	2551	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	0	-18	0	18	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGAAATTTCTTAAATG	NA	False	NA	NA	False	NA	NA	NA	130390481	130366745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ES_00001718	chr1	-	2018	8	NIC	ENSMUSG00000026399.13	novel	3133	8	NA	NA	26	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	22.8830210649998	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCTGATTGATTTGCC	NA	False	NA	NA	False	AATAAA	-24	NA	130390442	130374397	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ES_00001719	chr1	-	3133	8	FSM	ENSMUSG00000026399.13	ENSMUST00000140725.8	3133	8	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_7	10.5926428068095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCTGATTGATTTGCC	NA	False	NA	NA	False	AATAAA	-24	NA	130390468	130374397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_130375377_130376064_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ES_00001722	chr1	-	2858	10	FSM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	0	-4	0	4	multi-exon	FALSE	canonical	3	81	junction_6	17.0105268787113	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTCTTTTTCTTCCTGA	NA	False	NA	-10	True	ACTAAA	-23	NA	131025563	130981432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_130982973_130983495_130983577_130983665_130983752_130984150_130984276_130984625_130984702_130985230_130985358_130985737_130985818_130986088_130986154_130986359_130986500_131025025
ES_00001723	chr1	-	3141	3	FSM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	8	15	8	-15	multi-exon	FALSE	canonical	3	221	junction_1	9	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATTGGTTTTAAACCCAA	245	False	NA	NA	False	AATAAA	-10	NA	131066069	131055206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131057983_131063996_131064109_131065816
ES_00001725	chr1	-	411	5	FSM	ENSMUSG00000042349.14	ENSMUST00000160748.8	911	5	338	162	338	-162	multi-exon	FALSE	canonical	3	13	junction_1	2.27760839478607	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCAGCCTAGCCCTTCC	6522	False	NA	NA	False	NA	NA	NA	131193687	131186918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611
ES_00001727	chr1	-	7995	23	FSM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	0	31	0	-31	multi-exon	TRUE	canonical	3	89	junction_2	12.3013135091171	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTAAGATGTTGCTGAA	NA	False	NA	NA	False	NA	NA	NA	131455085	131213019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
ES_00001728	chr1	-	2451	12	FSM	ENSMUSG00000026425.16	ENSMUST00000188770.7	2449	12	1	-3	1	0	multi-exon	FALSE	canonical	3	115	junction_11	8.23818964306123	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	9614	False	NA	0	True	AATAAA	-26	NA	131272284	131222955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086
ES_00001729	chr1	-	3533	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	23.367225143015	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	False	NA	0	True	AATAAA	-26	NA	131455085	131222955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
ES_00001734	chr1	-	585	5	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1963	6208	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	39.6169155790806	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACCCTTCTTAATTTCG	NA	False	NA	0	True	AATAAA	-18	NA	132206186	132196245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_132196405_132196619_132196718_132202453_132202560_132202761_132202875_132206077
ES_00001739	chr1	-	7067	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	38	0	-21	0	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	-5	True	ATTAAA	-15	NA	132953116	132913957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
ES_00001743	chr1	-	1914	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953094	132919091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
ES_00001744	chr1	-	1497	10	NIC	ENSMUSG00000054387.14	novel	2799	10	NA	NA	-560	-305	combination_of_known_junctions	FALSE	canonical	3	28	junction_9	144.134967613306	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGAGTCAGTCACAGAG	NA	False	NA	NA	False	ATTAAA	-13	NA	132947156	132919396	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132947091
ES_00001749	chr1	-	233	2	Intergenic	novelGene_139	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	240	junction_1	0	124	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTACTTGACTTTAATCC	NA	False	NA	NA	False	AAAAAG	-25	NA	132971714	132963791	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_132963971_132971660
ES_00001750	chr1	-	208	2	Antisense	novelGene_ENSMUSG00000041757.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGATTAAACCTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	133139213	133135050	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_133135209_133139163
ES_00001751	chr1	-	3182	13	FSM	ENSMUSG00000070643.12	ENSMUST00000144386.8	3179	13	0	-3	0	3	multi-exon	FALSE	canonical	1	1	junction_1	29.0271663944121	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCCCTTTCTCTGCTGGG	NA	False	NA	-5	True	AATAAA	-18	NA	133320956	133310037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133311663_133312150_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810
ES_00001753	chr1	-	3696	14	FSM	ENSMUSG00000070643.12	ENSMUST00000153799.8	3693	14	0	-3	0	3	multi-exon	FALSE	canonical	3	38	junction_8	19.9582404271205	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCCCTTTCTCTGCTGGG	NA	False	NA	-5	True	AATAAA	-18	NA	133352115	133310037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133311663_133312194_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
ES_00001754	chr1	-	4357	13	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-129	3	intron_retention	FALSE	canonical	3	38	junction_7	18.8252194911212	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCCCTTTCTCTGCTGGG	NA	False	NA	-5	True	AATAAA	-18	NA	133352244	133310037	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
ES_00001757	chr1	-	360	4	FSM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	1734.66788367879	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133537970	133531613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133531815_133536634_133536698_133537455_133537483_133537901
ES_00001758	chr1	-	2826	4	FSM	ENSMUSG00000090553.9	ENSMUST00000164096.2	669	4	34	-2191	0	0	multi-exon	FALSE	canonical	3	3763	junction_2	133.057214093119	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537953	133531633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133534318_133536634_133536698_133537455_133537483_133537901
ES_00001760	chr1	-	11579	16	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	20	0	20	0	intron_retention	FALSE	canonical	3	293	junction_13	50.7709453219938	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589098	133547608	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710
ES_00001762	chr1	-	4863	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	19	combination_of_known_junctions	FALSE	canonical	3	41	junction_16	109.88493510003	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATGCTATTGTTTTAA	NA	False	NA	20	True	AATAAA	-40	NA	133589098	133547580	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133583082_133583137_133588974
ES_00001763	chr1	-	4476	19	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	13	combination_of_known_junctions	FALSE	canonical	3	8	junction_18	136.952197211245	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCAAGTGATGCTATTG	NA	False	NA	14	True	AATAAA	-34	NA	133589096	133547586	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588313_133588360_133588993
ES_00001764	chr1	-	4460	18	NNC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	13	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_16	109.549628512681	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCAAGTGATGCTATTG	NA	False	NA	14	True	AATAAA	-34	NA	133589096	133547586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583071_133583137_133588974
ES_00001765	chr1	-	4427	18	NNC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	13	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	131.867239518129	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCAAGTGATGCTATTG	NA	False	NA	14	True	AATAAA	-34	NA	133589096	133547586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563792_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588993
ES_00001766	chr1	-	4448	18	NNC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	13	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_9	123.054324515666	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCAAGTGATGCTATTG	NA	False	NA	14	True	AATAAA	-34	NA	133589098	133547586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565195_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588974
ES_00001767	chr1	-	4417	17	FSM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	0	-22	0	22	multi-exon	FALSE	canonical	3	37	junction_16	98.6493157604248	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCAAGTGATGCTATTG	NA	False	NA	14	True	AATAAA	-34	NA	133589118	133547586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
ES_00001768	chr1	-	4815	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	41	junction_16	116.945969839032	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589097	133547608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133583082_133583137_133588993
ES_00001770	chr1	-	11490	21	FSM	ENSMUSG00000026463.18	ENSMUST00000143567.8	11725	21	46	189	41	-189	multi-exon	FALSE	canonical	2	6	junction_20	5.11346262331114	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCAGGGGACTGTAGCA	9255	False	NA	NA	False	TTTAAA	-41	NA	133728733	133627383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133664353_133664390_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826_133681488_133728374
ES_00001775	chr1	-	5791	25	NIC	ENSMUSG00000026458.14	novel	6067	29	NA	NA	-1837	0	intron_retention	FALSE	canonical	2	11	junction_1	15.4591194768654	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGTGTCAGTTTCTTC	NA	False	NA	0	True	AATAAA	-24	NA	134256841	134224520	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_134226875_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381
ES_00001776	chr1	-	6047	28	NNC	ENSMUSG00000026458.14	novel	5238	28	NA	NA	-11796	-8	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_26	16.5805180934407	964	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAGACAATGTACAAATG	NA	False	NA	-14	True	AATAAA	-10	NA	134272462	134224534	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381_134256547_134256883_134256986_134260027_134260667_134272330
ES_00001777	chr1	-	3149	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289717	134273834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ES_00001778	chr1	-	1689	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTCATGGAAGAACGTT	NA	False	NA	67	True	NA	NA	NA	134289679	134275419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ES_00001779	chr1	-	725	4	FSM	ENSMUSG00000042305.13	ENSMUST00000188205.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	71.4749373323731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGGACTTGTTGATAT	NA	False	NA	NA	False	NA	NA	NA	134289691	134283179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_134283455_134288494_134288663_134289271_134289362_134289499
ES_00001782	chr1	-	1914	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	0	-13	0	9	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTGTACTGAAATTTG	NA	False	NA	3	True	AATAAA	-36	NA	135186176	135181303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
ES_00001783	chr1	-	2096	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	0	-1	0	1	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	-5	True	AATAAA	-28	NA	135186306	135181311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
ES_00001784	chr1	-	2301	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	0	-13	0	13	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATGACTCATTTATTGT	NA	False	NA	-1	True	AATAAA	-35	NA	135211822	135190436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
ES_00001785	chr1	-	2202	10	FSM	ENSMUSG00000041926.16	ENSMUST00000074357.8	2171	10	-22	-9	-22	9	multi-exon	FALSE	canonical	3	54	junction_7	75.0946727574148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATAGAATGACTCATTTA	NA	False	NA	-5	True	AATAAA	-31	NA	135211844	135190440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135205126_135205276_135206504_135206646_135211299
ES_00001788	chr1	-	1227	7	NNC	ENSMUSG00000062580.10	novel	7280	6	NA	NA	19	-1614	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1006.50031738141	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTGAGTTCCAGAACAG	NA	False	NA	NA	False	NA	NA	NA	135241497	135224564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_135224850_135229269_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ES_00001789	chr1	-	8535	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	34	-1289	34	1289	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	135241482	135221661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ES_00001790	chr1	-	1405	3	FSM	ENSMUSG00000041889.8	ENSMUST00000159918.2	1404	3	0	-1	0	1	multi-exon	FALSE	canonical	3	26	junction_2	3.5	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATGAGTCCGTCCTTCC	NA	False	NA	1	True	NA	NA	NA	135301188	135298796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135299735_135299934_135300103_135300889
ES_00001792	chr1	-	6239	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	8	0	0	0	multi-exon	TRUE	canonical	3	518	junction_15	35.6964730086209	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCCTGTCAGTTTCAGT	NA	False	NA	-4	True	AATAAA	-21	NA	135358229	135310049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
ES_00001793	chr1	-	4189	25	FSM	ENSMUSG00000041879.14	ENSMUST00000161189.8	4189	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	161.892405756622	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTCTGCATACTCTAAG	NA	False	NA	-19	True	AGTAAA	-19	NA	135358229	135312210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135354668_135354780_135358005
ES_00001794	chr1	-	796	4	FSM	ENSMUSG00000041879.14	ENSMUST00000161750.8	808	4	0	12	0	-12	multi-exon	FALSE	canonical	3	585	junction_2	33.7671766990109	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGATGGGTGGCTGTCTG	NA	False	NA	NA	False	AAGAAA	-2	NA	135316287	135313558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135314059_135314421_135314545_135315111_135315246_135316248
ES_00001795	chr1	-	843	3	FSM	ENSMUSG00000041879.14	ENSMUST00000162858.2	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	585	junction_1	37	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGAGGAGGAGGAGGAT	NA	False	NA	NA	False	AATAGA	-33	NA	135316438	135314025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135314545_135315111_135315246_135316248
ES_00001797	chr1	-	9057	28	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-83	508	combination_of_known_junctions	FALSE	canonical	3	28	junction_27	14.6067800932087	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGTCTGTGCATTTTT	NA	False	NA	-4	True	AATAAA	-31	NA	135513176	135366077	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292
ES_00001798	chr1	-	9298	30	NIC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	-91	508	combination_of_known_splicesites	FALSE	canonical	2	5	junction_27	17.5028450209895	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGTCTGTGCATTTTT	NA	False	NA	-4	True	AATAAA	-31	NA	135615934	135366077	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135530282_135530387_135534899_135535643_135615656
ES_00001799	chr1	-	3028	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	-26	-14	-26	14	multi-exon	TRUE	canonical	3	39	junction_9	8.93736780097342	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGAGTTGTTT	NA	False	NA	1	True	AATAAA	-34	NA	136162028	136141254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
ES_00001801	chr1	-	7805	17	FSM	ENSMUSG00000041570.15	ENSMUST00000192001.6	6329	17	-436	-1040	-30	3	multi-exon	FALSE	canonical	3	33	junction_16	9.18197112552637	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGGCATTGCGGTGTT	6720	False	NA	NA	False	NA	NA	NA	136273872	136195857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275_136204497_136204931_136205069_136208043_136210238_136210549_136210620_136211604_136211640_136213646_136213741_136215637_136215732_136220617_136220758_136221017_136221160_136225479_136225564_136232032_136232195_136252474_136252735_136273036
ES_00001802	chr1	-	401	1	FSM	ENSMUSG00000104360.2	ENSMUST00000193486.2	339	1	-54	-8	-54	8	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCACCGCTGTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	136717312	136716911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_136716900_136717300
ES_00001804	chr1	-	3383	7	FSM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	63	0	63	0	multi-exon	FALSE	canonical	3	44	junction_6	7.84042232422605	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAATACTGG	NA	False	NA	NA	False	NA	NA	NA	136877237	136772013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459
ES_00001806	chr1	-	4301	10	FSM	ENSMUSG00000026393.11	ENSMUST00000186017.7	5258	10	0	957	0	5	multi-exon	TRUE	canonical	3	136	junction_1	7.19739321808962	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGATCATCGTCTTGCTT	NA	False	NA	5	True	AATAAA	-23	NA	138547487	138411569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
ES_00001808	chr1	-	1369	1	FSM	ENSMUSG00000104496.2	ENSMUST00000191844.2	1369	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTGGGATGGAGGCGCAC	1360	False	NA	NA	False	NA	NA	NA	139857346	139855977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_139856000_139857300
ES_00001812	chr1	-	8722	9	FSM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	19	-3	19	3	multi-exon	FALSE	canonical	3	15	junction_2	6.34428877022476	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTAATCATTTTTT	NA	False	NA	2	True	AATAAA	-20	NA	143652787	143626524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_143633633_143635680_143635828_143636090_143636205_143637007_143637125_143641170_143641309_143641511_143641659_143642327_143642549_143646163_143646765_143652658
ES_00001814	chr1	-	2850	18	FSM	ENSMUSG00000056220.15	ENSMUST00000070200.15	2856	18	-4	10	-4	8	multi-exon	FALSE	canonical	0	0	junction_2	1.05882352941176	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTAGAAACTTGAGTCTT	3928	False	NA	NA	False	AATAAA	-20	NA	149837045	149705378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_149705944_149716368_149716527_149717914_149718111_149727017_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897_149762040_149763357_149763396_149776850_149776965_149778044_149778194_149797805_149797888_149808408_149808508_149836941
ES_00001817	chr1	-	3273	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAATTTTAAAATAGGA	633	False	NA	NA	False	AATAAA	-21	NA	150268831	150237055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ES_00001819	chr1	-	2853	13	FSM	ENSMUSG00000006010.15	ENSMUST00000097547.10	2851	13	0	-2	0	2	multi-exon	FALSE	canonical	2	5	junction_6	38.2014942988709	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAATGTGGAATTTTAAA	951	False	NA	NA	False	AATAAA	-15	NA	150268513	150237061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ES_00001821	chr1	-	1102	10	FSM	ENSMUSG00000006010.15	ENSMUST00000148389.8	1102	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	33.2298393348843	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCAACAGACCCAAGGT	776	False	NA	NA	False	NA	NA	NA	150268688	150251282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
ES_00001824	chr1	-	1364	1	FSM	ENSMUSG00000100954.6	ENSMUST00000186597.2	2498	1	-7	1141	-7	-1141	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGTGTTCACTTCTACTT	NA	False	NA	NA	False	CATAAA	-1	NA	151220989	151219625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_151219600_151221000
ES_00001831	chr1	-	1138	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	-5	0	5	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAATCATCCATCATTGCA	NA	False	NA	0	True	AATAAA	-34	NA	152262433	152246480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ES_00001832	chr1	-	2424	1	FSM	ENSMUSG00000014980.15	ENSMUST00000188105.2	2418	1	-34	28	28	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGATTTGCTAAATAATT	NA	False	NA	NA	False	NA	NA	NA	152262405	152259981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152260000_152262400
ES_00001833	chr1	-	216	1	FSM	ENSMUSG00000026482.14	ENSMUST00000188395.2	1537	1	408	913	408	-913	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACTGCCTTTTAAAAACT	NA	False	NA	NA	False	NA	NA	NA	152428387	152428171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152428200_152428400
ES_00001834	chr1	-	1356	1	FSM	ENSMUSG00000080950.2	ENSMUST00000119836.2	1401	1	7	38	7	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCCTGCAGCCTGTGCT	8861	False	NA	NA	False	NA	NA	NA	152606303	152604947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152604900_152606300
ES_00001836	chr1	-	6088	24	NNC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	-128	19584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.8943896106831	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTCTCAGGTATCTAATG	NA	False	NA	NA	False	NA	NA	NA	152778525	152693161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_152693194_152712745_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152753791_152753929_152778259
ES_00001837	chr1	-	5793	23	FSM	ENSMUSG00000042772.16	ENSMUST00000043560.15	5792	23	0	-1	0	0	multi-exon	FALSE	canonical	3	48	junction_22	82.5368938292156	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	-3	True	ATTAAA	-19	NA	152753919	152712745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152753791
ES_00001838	chr1	-	5767	22	FSM	ENSMUSG00000042772.16	ENSMUST00000073441.13	5767	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	55.4427244244903	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	-3	True	ATTAAA	-19	NA	152778373	152712745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ES_00001839	chr1	-	3928	23	FSM	ENSMUSG00000042772.16	ENSMUST00000111836.4	3928	23	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	70.0173089579927	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGCTTTGCTGACTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	152778397	152714620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ES_00001840	chr1	-	672	3	FSM	ENSMUSG00000042772.16	ENSMUST00000186900.2	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	68	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGCAATCCCCTACAAAA	NA	False	NA	NA	False	NA	NA	NA	152724756	152721034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152721290_152721869_152722015_152724484
ES_00001841	chr1	-	217	1	FSM	ENSMUSG00000100394.2	ENSMUST00000185888.2	1779	1	1570	-8	1570	8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGAGTCCATCTG	NA	False	NA	NA	False	NA	NA	NA	152754479	152754262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152754300_152754500
ES_00001842	chr1	-	5108	23	FSM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	-192	0	-192	0	multi-exon	FALSE	canonical	3	71	junction_14	15.8534090501821	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153061985	152998501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654
ES_00001843	chr1	-	5164	24	FSM	ENSMUSG00000026479.14	ENSMUST00000027753.13	5164	24	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_23	24.3679264856456	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153062193	152998501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654_153061848_153061999
ES_00001844	chr1	-	7622	28	FSM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_2	111.881330429904	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTGTGGCCTAAATG	NA	False	NA	-1	True	AATAAA	-24	NA	153208532	153094667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
ES_00001845	chr1	-	924	4	FSM	ENSMUSG00000026478.15	ENSMUST00000159251.2	924	4	0	0	0	0	multi-exon	FALSE	canonical	3	720	junction_2	53.6925403467641	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTTCAAGAACTTACTA	3880	False	NA	NA	False	AATAAA	-12	NA	153126207	153124362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153124899_153125310_153125501_153125590_153125714_153126132
ES_00001848	chr1	-	4609	28	FSM	ENSMUSG00000042699.12	ENSMUST00000042141.12	4616	28	0	7	0	-7	multi-exon	FALSE	canonical	3	83	junction_24	29.9642219210858	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATTGATTGTGTCATTG	NA	False	NA	-8	True	AATAAA	-11	NA	153363406	153331510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ES_00001849	chr1	-	4719	29	NIC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	8	junction_23	45.1073973525227	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAATTGATTGTGTCA	NA	False	NA	-11	True	AATAAA	-8	NA	153363380	153331513	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153352169_153352309_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ES_00001850	chr1	-	266	1	FSM	ENSMUSG00000042699.12	ENSMUST00000190383.2	2274	1	1884	124	-513	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGTACTTATGTATAATAA	NA	False	NA	NA	False	NA	NA	NA	153354412	153354146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153354100_153354400
ES_00001856	chr1	-	4482	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	24	-2073	0	-60	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTCTCGGGAAAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	155688566	155651834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
ES_00001859	chr1	-	4359	10	FSM	ENSMUSG00000026466.17	ENSMUST00000097527.10	4234	10	0	-125	0	110	multi-exon	FALSE	canonical	3	47	junction_4	20.1935083078146	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTTGTAGACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	155912173	155880234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
ES_00001860	chr1	-	4010	11	FSM	ENSMUSG00000026466.17	ENSMUST00000136331.8	2723	11	333	-1620	0	0	multi-exon	FALSE	canonical	2	47	junction_4	24.0865107477194	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGTATGTTATAAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	155911893	155880359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
ES_00001861	chr1	-	453	2	FSM	ENSMUSG00000026466.17	ENSMUST00000124212.2	658	2	18	187	18	-187	multi-exon	FALSE	canonical	3	103	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTAGACCCCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	155894347	155893256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155893326_155893963
ES_00001863	chr1	-	785	4	FSM	ENSMUSG00000026466.17	ENSMUST00000141980.2	784	4	0	-1	0	1	multi-exon	FALSE	canonical	3	96	junction_3	11.7284080571728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTTGTCAAGTGTTCTG	NA	False	NA	NA	False	AATAAA	-42	NA	155911893	155905917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155906178_155907159_155907220_155909471_155909547_155911503
ES_00001865	chr1	-	229	2	Antisense	novelGene_ENSMUSG00000101523.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	46	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAGTTACCTATTCAAT	NA	False	NA	NA	False	NA	NA	NA	156358301	156350308	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_156350487_156358250
ES_00001866	chr1	-	202	1	Intergenic	novelGene_178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGGAAACTGAATAATCT	5664	False	NA	NA	False	NA	NA	NA	156425251	156425049	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_156425000_156425300
ES_00001867	chr1	-	3285	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501926	156481186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
ES_00001869	chr1	-	4430	8	FSM	ENSMUSG00000033557.18	ENSMUST00000086153.8	4414	8	-16	0	-16	0	multi-exon	TRUE	canonical	3	86	junction_7	39.1298205610869	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATAAAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	156546672	156506140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237_156533738_156546435
ES_00001872	chr1	-	2947	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767101	156635685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ES_00001873	chr1	-	2964	20	FSM	ENSMUSG00000026594.15	ENSMUST00000191605.7	2958	20	0	-6	0	0	multi-exon	FALSE	canonical	2	13	junction_19	72.7811198920598	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767178	156635685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735289_156767058
ES_00001875	chr1	-	2229	18	FSM	ENSMUSG00000026594.15	ENSMUST00000185198.7	2229	18	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	58.0582573427307	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATATATAGAAACATTCG	NA	False	NA	NA	False	AATAAA	-12	NA	156767196	156640650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ES_00001877	chr1	-	1600	12	ISM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	0	9744	0	-69	5prime_fragment	FALSE	canonical	3	193	junction_3	27.825311029426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTACTGTTTATATTT	NA	False	NA	NA	False	AATAAA	-11	NA	156767163	156656190	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ES_00001878	chr1	-	1857	1	ISM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	275550	7	44396	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTAAGAGTTGCTACTATC	NA	False	NA	-3	True	AATAAA	-21	NA	156964615	156962758	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_156962800_156964600
ES_00001882	chr1	-	5767	6	ISM	ENSMUSG00000026721.17	ENSMUST00000028052.12	6338	9	104000	0	427	0	3prime_fragment	FALSE	canonical	2	6	junction_1	4.01995024844836	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTCTAATTTTTTTCA	2794	False	NA	-9	True	AATAAA	-17	NA	160075141	160046743	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_160051939_160054054_160054253_160059365_160059438_160064195_160064280_160066100_160066206_160075028
ES_00001886	chr1	-	230	1	FSM	ENSMUSG00000103680.2	ENSMUST00000194570.2	837	1	-214	821	-214	-821	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	160829629	160829399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160829400_160829600
ES_00001887	chr1	-	3567	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	28	24	0	-24	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCAAAAATCAGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	160898200	160868194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
ES_00001888	chr1	-	4015	15	FSM	ENSMUSG00000026709.11	ENSMUST00000162654.8	4015	15	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_4	42.9292845198677	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCTGTCTCACAGATC	NA	False	NA	NA	False	NA	NA	NA	160898212	160868759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160869501_160871182_160871259_160872528_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649
ES_00001890	chr1	-	4072	12	FSM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	12.7525722571391	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTGGATTTTTT	NA	False	NA	3	True	AATAAA	-37	NA	160959081	160915944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ES_00001891	chr1	-	2077	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	16	2089	16	1585	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACTGTATGTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	160959065	160926103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ES_00001893	chr1	-	2384	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	0	3	0	-3	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAATGTGAGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	161078789	161067684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ES_00001894	chr1	-	1294	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078756	161068584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
ES_00001895	chr1	-	2558	1	FSM	ENSMUSG00000026701.16	ENSMUST00000194613.2	2558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	ATTAAA	-30	NA	161078732	161076174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161076200_161078700
ES_00001896	chr1	-	2048	2	NIC	ENSMUSG00000040323.14	novel	798	3	NA	NA	-198	719	intron_retention	FALSE	non_canonical	3	303	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAATACAAGAGAACA	NA	False	NA	NA	False	NA	NA	NA	161555256	161553091	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_161554584_161554700
ES_00001897	chr1	-	6334	24	FSM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	0	-7	0	7	multi-exon	FALSE	canonical	3	81	junction_17	25.1317135224534	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCGTGTATCTGTGGAGG	418	False	NA	NA	False	AATAAA	-21	NA	161704251	161643675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ES_00001899	chr1	-	537	7	FSM	ENSMUSG00000040297.13	ENSMUST00000192570.2	537	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	35.7153095091353	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATTGCTGACTCCCAGT	NA	False	NA	NA	False	AATGAA	-44	NA	161681312	161672416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161672450_161672871_161672928_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283
ES_00001901	chr1	-	4525	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	16	0	3	0	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGCTTTTTTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	162376104	162359695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
ES_00001903	chr1	-	11291	35	FSM	ENSMUSG00000040225.16	ENSMUST00000182149.8	11289	35	0	-2	0	2	multi-exon	FALSE	canonical	3	34	junction_26	40.8981454897196	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTGTCTGCAATGGAAA	3445	False	NA	NA	False	AATAAA	-17	NA	162568094	162498291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_162501226_162501667_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
ES_00001904	chr1	-	11496	35	FSM	ENSMUSG00000040225.16	ENSMUST00000182660.8	11502	35	10	-4	4	2	multi-exon	FALSE	canonical	3	17	junction_1	43.790591648835	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTGTCTGCAATGGAAA	3424	False	NA	NA	False	AATAAA	-17	NA	162568115	162498291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_162501226_162503173_162503411_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
ES_00001907	chr1	-	10173	34	NIC	ENSMUSG00000040225.16	novel	11289	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_25	41.8465867517673	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCTTGGAACTTCTAAT	3445	False	NA	NA	False	AATAAA	-16	NA	162568094	162499356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_162501226_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
ES_00001908	chr1	-	10152	34	NIC	ENSMUSG00000040225.16	novel	9022	34	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_30	43.9614364773645	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCTTGGAACTTCTAAT	3445	False	NA	NA	False	AATAAA	-16	NA	162568094	162499356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_162501226_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162549013_162549109_162550678_162550851_162552272_162552439_162567893
ES_00001909	chr1	-	8812	35	FSM	ENSMUSG00000040225.16	ENSMUST00000028016.16	8815	35	3	0	3	0	multi-exon	FALSE	canonical	3	17	junction_1	44.4749161448334	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGTGGTTTATTGGGGA	3423	False	NA	NA	False	AAGAAA	-12	NA	162568116	162500970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_162501226_162503173_162503411_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550851_162552272_162552439_162567893
ES_00001911	chr1	-	3824	25	NNC	ENSMUSG00000041406.15	novel	3217	25	NA	NA	0	40	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	69.5179333377766	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCTTTAATGAGCGCTGA	NA	False	NA	NA	False	NA	NA	NA	163822365	163773521	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_163773995_163781150_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
ES_00001912	chr1	-	3179	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	0	0	0	0	multi-exon	FALSE	canonical	2	170	junction_8	40.7878461455702	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCTTACCAGCTTGAA	NA	False	NA	NA	False	AATAGA	-29	NA	163822365	163781322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
ES_00001913	chr1	-	2556	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	6	-960	1	219	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGCCCTTTCCTTTCAG	NA	False	NA	-18	True	AATAAA	-19	NA	164135052	164118738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
ES_00001914	chr1	-	2430	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAAGGTGCTCATTTGT	NA	False	NA	-5	True	ATTAAA	-16	NA	164135058	164118957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ES_00001915	chr1	-	2580	6	FSM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_5	105.155123508082	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	False	NA	-16	True	AATAAA	-16	NA	164285924	164264677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329
ES_00001916	chr1	-	5518	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	17	0	17	0	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTGTCTCTTACTC	NA	False	NA	NA	False	AATAAA	-26	NA	165021990	165001905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
ES_00001921	chr1	-	2171	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462090	165419808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ES_00001922	chr1	-	2285	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462098	165419808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ES_00001925	chr1	-	2682	3	NNC	ENSMUSG00000040723.15	novel	5001	6	NA	NA	51019	151	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	12	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTACCACAATTTCTCAT	NA	False	NA	NA	False	AAAACA	-31	NA	165484598	165476364	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_165477780_165482873_165483606_165484063
ES_00001928	chr1	-	4028	6	FSM	ENSMUSG00000026564.10	ENSMUST00000192369.6	4045	6	15	2	-11	-2	multi-exon	FALSE	canonical	1	3	junction_5	17.4768418199628	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTCATTCTGGTCAT	NA	False	NA	-3	True	ATTAAA	-17	NA	165955476	165925718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954769_165955360
ES_00001929	chr1	-	4095	6	FSM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	-70	-7	-44	2	multi-exon	FALSE	canonical	2	3	junction_5	17.4768418199628	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATTCTGGTCATTTCC	NA	False	NA	1	True	ATTAAA	-21	NA	165955535	165925714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954773_165955360
ES_00001932	chr1	-	842	1	FSM	ENSMUSG00000086925.2	ENSMUST00000145247.2	762	1	-27	-53	-27	53	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACATGGAATTTAGAAG	NA	False	NA	NA	False	ATTAAA	-6	NA	166773954	166773112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_166773100_166774000
ES_00001933	chr1	-	4636	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	95	0	95	0	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTGTGGGTGCCTGGT	NA	False	NA	0	True	AATAAA	-32	NA	167112794	167050451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
ES_00001934	chr1	-	1097	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTTTCTTAAGCAATAG	4956	False	NA	NA	False	AATAAA	-16	NA	167221410	167199534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
ES_00001935	chr1	-	926	2	FSM	ENSMUSG00000052534.16	ENSMUST00000176791.2	4357	2	0	3431	0	-3431	multi-exon	FALSE	canonical	1	1	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGGTAGGAATGAAAACTC	NA	False	NA	NA	False	AAGAAA	-3	NA	168259738	168255441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_168255512_168258882
ES_00001937	chr1	-	2068	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_14	29.0531708199618	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169358997	169325879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ES_00001938	chr1	-	1273	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	-2	0	2	multi-exon	FALSE	canonical	3	87	junction_10	33.1324614238061	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAAGTGTGGGTTTTTTT	NA	False	NA	-1	True	AATACA	-17	NA	169358980	169337683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ES_00001941	chr1	-	1447	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	0	-1	0	1	multi-exon	TRUE	canonical	3	56	junction_5	6.15115718331742	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTCTCTGTGATCTTA	NA	False	NA	NA	False	AATAAA	-25	NA	169796810	169783068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
ES_00001942	chr1	-	8295	17	FSM	ENSMUSG00000026674.10	ENSMUST00000170800.8	8289	17	0	-6	0	5	multi-exon	FALSE	canonical	0	0	junction_7	3.09989919190931	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTTCTGTCTCAGCAG	NA	False	NA	NA	False	ATTAAA	-21	NA	169916513	169799870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169805559_169809545_169809696_169811940_169812176_169812445_169812635_169814585_169814714_169815977_169816202_169818001_169818213_169822153_169822285_169823120_169823184_169825499_169825744_169829397_169829582_169831732_169831839_169832223_169832372_169832641_169832874_169834330_169834434_169863481_169863591_169916363
ES_00001943	chr1	-	2331	10	FSM	ENSMUSG00000026670.16	ENSMUST00000111350.10	2311	10	0	-20	0	20	multi-exon	FALSE	canonical	3	102	junction_2	66.4981202741852	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGAGTCACGGCTTTCTT	NA	False	NA	80	True	CATAAA	-9	NA	170002526	169969486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169970142_169970965_169971033_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ES_00001944	chr1	-	2287	11	FSM	ENSMUSG00000026670.16	ENSMUST00000111351.10	2287	11	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_3	44.8905335232274	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTGTTTCTACCTTAA	NA	False	NA	-4	True	AATAAA	-16	NA	170002515	169969570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169970142_169970965_169971033_169975564_169975616_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ES_00001945	chr1	-	2284	11	FSM	ENSMUSG00000026670.16	ENSMUST00000027981.8	2283	11	0	-1	0	0	multi-exon	FALSE	canonical	3	59	junction_3	76.9519330491444	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTGTTTCTACCTTAA	NA	False	NA	-4	True	AATAAA	-16	NA	170002515	169969570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_169970142_169970965_169971033_169975564_169975613_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ES_00001946	chr1	-	7865	8	FSM	ENSMUSG00000026667.15	ENSMUST00000027979.14	7864	8	0	-1	0	1	multi-exon	FALSE	canonical	3	88	junction_5	8.63311138842179	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCTTATTTCTTTTCC	NA	False	NA	NA	False	AATAAA	-19	NA	170042966	170020987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170027583_170032683_170032773_170034682_170034782_170034914_170034992_170036223_170036319_170038599_170038792_170039804_170040098_170042541
ES_00001949	chr1	-	4508	16	NNC	ENSMUSG00000026663.7	novel	7246	16	NA	NA	10	-2725	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	17.5630926155453	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCAGTGGTTAACTTCG	NA	False	NA	NA	False	AATAAA	-16	NA	170695330	170534967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_170537657_170574674_170574760_170614914_170615027_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
ES_00001954	chr1	-	3464	8	FSM	ENSMUSG00000026656.16	ENSMUST00000027966.14	3544	8	80	0	80	0	multi-exon	FALSE	canonical	1	1	junction_3	28.4224688353049	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGGGTTATTTGATAT	NA	False	NA	NA	False	AATAAA	-19	NA	170803616	170786185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170788670_170788764_170788803_170790893_170791035_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
ES_00001955	chr1	-	1660	5	ISM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	7447	0	-7050	0	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6346451535842	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170796249	170788126	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548
ES_00001956	chr1	-	2507	8	NIC	ENSMUSG00000026656.16	novel	1578	10	NA	NA	-768	0	intron_retention	FALSE	canonical	2	6	junction_7	25.2271314910218	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170804884	170788126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469_170803617_170803759
ES_00001958	chr1	-	1298	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	7.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170885623	170878742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170879422_170881507_170881763_170885259
ES_00001959	chr1	-	1339	5	FSM	ENSMUSG00000059498.14	ENSMUST00000164044.8	1347	5	9	-1	9	0	multi-exon	FALSE	canonical	3	12	junction_4	72.4581775923187	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170886963	170878742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154_170886176_170886837
ES_00001960	chr1	-	3034	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	137	0	-137	multi-exon	TRUE	canonical	3	578	junction_5	147.434866975217	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGAGTTTGATCCCAGGAT	456	False	NA	NA	False	NA	NA	NA	170978172	170954870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ES_00001962	chr1	-	1552	3	FSM	ENSMUSG00000038370.7	ENSMUST00000111332.2	1577	3	23	2	23	-2	multi-exon	FALSE	canonical	1	2	junction_1	0.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGAGTGGTTTGTGTGGGT	NA	False	NA	-1	True	AATAAA	-31	NA	171023814	171000832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171002095_171003138_171003194_171023579
ES_00001964	chr1	-	2812	9	FSM	ENSMUSG00000005674.10	ENSMUST00000111327.8	2812	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_2	8.45484328654293	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTGTTTCACAGATCC	9839	False	NA	NA	False	AGTAAA	-16	NA	171049753	171045370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472
ES_00001965	chr1	-	1423	10	NIC	ENSMUSG00000005674.10	novel	4712	10	NA	NA	7	-748	combination_of_known_junctions	FALSE	canonical	2	13	junction_9	36.8945778745768	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCCTGGTTTCTCCATT	9598	False	NA	92	True	AAAAAG	-13	NA	171049994	171046679	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049623_171049943
ES_00001967	chr1	-	1625	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	0	-2	0	2	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTAATGTGTCTTTCTTGG	NA	False	NA	1	True	ATTAAA	-30	NA	171074691	171062419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ES_00001968	chr1	-	1847	12	FSM	ENSMUSG00000013593.13	ENSMUST00000136976.7	1845	12	0	-2	0	2	multi-exon	FALSE	canonical	3	1142	junction_11	112.190068946623	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTAATGTGTCTTTCTTGG	NA	False	NA	1	True	ATTAAA	-30	NA	171074691	171062419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ES_00001970	chr1	-	2359	14	NNC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	0	10496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.231050558368	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGCTTACATCATTCAA	NA	False	NA	NA	False	NA	NA	NA	171115532	171099022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_171099199_171109522_171109877_171110070_171110186_171110268_171110375_171110586_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ES_00001971	chr1	-	1821	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_8	32.2076595444831	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
ES_00001973	chr1	-	2107	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	12	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	156.020077114485	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115516	171109522	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113922_171114544_171115334
ES_00001974	chr1	-	2215	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	0	4	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115564	171109522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ES_00001981	chr1	-	1014	6	FSM	ENSMUSG00000062963.11	ENSMUST00000111302.4	914	6	46	-146	0	-1	multi-exon	FALSE	canonical	3	530	junction_3	38.9943585663362	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCCTGTGGTTCTCATTG	7366	False	NA	-3	True	AATAAA	-15	NA	171122514	171116138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206
ES_00001983	chr1	-	822	7	FSM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	228.930423685645	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATAGGCGGTTTGTATCC	7366	False	NA	NA	False	AATGAA	-32	NA	171122514	171116266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206_171122401_171122493
ES_00001984	chr1	-	494	1	FSM	ENSMUSG00000079137.4	ENSMUST00000088784.6	408	1	-51	-35	-51	35	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAAGCGAGGCAGCTTA	3036	False	NA	NA	False	NA	NA	NA	171133118	171132624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171132600_171133100
ES_00001985	chr1	-	3037	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	4	0	-2	0	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTTGACTTGGTTCA	882	False	NA	2	True	ATTAAA	-23	NA	171173210	171168138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
ES_00001986	chr1	-	1335	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_6	27.0025718939676	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
ES_00001989	chr1	-	860	1	FSM	ENSMUSG00000091993.3	ENSMUST00000181170.2	3544	1	1833	851	1833	-851	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTGATAACAAAACCAAAGA	453	False	NA	NA	False	NA	NA	NA	171329846	171328986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171329000_171329800
ES_00001990	chr1	-	5698	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTCTGTTGCTT	NA	False	NA	-7	True	AATAAA	-15	NA	171854862	171828526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
ES_00001992	chr1	-	2901	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
ES_00001993	chr1	-	3016	18	FSM	ENSMUSG00000003458.13	ENSMUST00000140643.8	3016	18	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_16	166.01196438311	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171903192_171903308_171908778_171908884_171910167
ES_00001999	chr1	-	1210	2	FSM	ENSMUSG00000026544.7	ENSMUST00000027826.7	1410	2	0	200	0	-200	multi-exon	FALSE	canonical	1	2	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTCCCTCTCTCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	172460529	172458530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_172459394_172460182
ES_00002000	chr1	-	603	1	FSM	ENSMUSG00000060128.6	ENSMUST00000073196.4	603	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTCTAGCGCAGTTTT	9762	False	NA	NA	False	NA	NA	NA	172497203	172496600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_172496600_172497200
ES_00002001	chr1	-	2636	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAATAGACTAATTTTTAT	792	False	NA	NA	False	AATAAA	-21	NA	175453201	175427939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
ES_00002002	chr1	-	1819	4	FSM	ENSMUSG00000026525.10	ENSMUST00000027809.8	1913	4	94	0	94	0	multi-exon	FALSE	canonical	3	10	junction_1	0	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTGTCATGTGTGTAG	NA	False	NA	NA	False	AATAAA	-30	NA	175520248	175489986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_175490721_175491092_175491345_175492875_175493196_175519735
ES_00002003	chr1	-	6905	2	FSM	ENSMUSG00000078185.4	ENSMUST00000104984.4	6905	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGCTCAATTGATGAA	NA	False	NA	3	True	AATAAA	-17	NA	175520196	175509802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_175516247_175519735
ES_00002004	chr1	-	731	1	FSM	ENSMUSG00000078184.2	ENSMUST00000104983.2	1338	1	176	431	176	-431	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGCGATATATTATTT	NA	False	NA	-1	True	AATAAA	-30	NA	175806504	175805773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_175805800_175806500
ES_00002005	chr1	-	7105	20	NNC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	-186	3	at_least_one_novel_splicesite	FALSE	non_canonical	3	10	junction_5	14.8579609223501	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATCATAGATTTCATGT	NA	False	NA	-6	True	AATAAA	-21	NA	176641819	176561224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570117_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176588916_176589067_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610119_176616029_176616112_176620101_176620192_176621070_176621216_176641461
ES_00002006	chr1	-	7017	20	NIC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	17.126383721924	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATGATCATAGATTTCA	NA	False	NA	-9	True	AATAAA	-18	NA	176641657	176561227	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570036_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176588916_176589067_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610118_176616032_176616112_176620101_176620192_176621070_176621216_176641461
ES_00002010	chr1	-	2619	14	FSM	ENSMUSG00000019699.17	ENSMUST00000111159.2	4906	14	0	2287	0	-2287	multi-exon	FALSE	canonical	3	17	junction_13	3.68910117177901	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTTTATATTACAGTAG	NA	False	NA	NA	False	NA	NA	NA	177085769	176851968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536_176958663_177076241_177076448_177085711
ES_00002011	chr1	-	2758	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	0	13	0	-13	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACACAGGTGATTCCTA	NA	False	NA	NA	False	AATAAA	-3	NA	177624077	177590540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ES_00002014	chr1	-	1357	3	FSM	ENSMUSG00000039630.11	ENSMUST00000162916.2	710	3	-158	-489	143	0	multi-exon	FALSE	canonical	3	42	junction_1	3043.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGTATTGTAGTACC	NA	False	NA	NA	False	ATTAAA	-14	NA	178158043	178151907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_178152879_178157432_178157505_178157729
ES_00002015	chr1	-	7640	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	0	0	0	0	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	1257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGTATTGTAGTACC	NA	False	NA	NA	False	ATTAAA	-14	NA	178165362	178151907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ES_00002016	chr1	-	6886	12	FSM	ENSMUSG00000055067.16	ENSMUST00000128302.8	6871	12	0	-15	0	15	multi-exon	FALSE	canonical	3	343	junction_1	34.6080772113168	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTGTGTCTGTGTTT	NA	False	NA	NA	False	AATAAA	-30	NA	179345599	178779509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899_178921968_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
ES_00002017	chr1	-	481	1	FSM	ENSMUSG00000096474.3	ENSMUST00000178932.3	480	1	132	-133	132	133	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATTTCTGGGTGTGATG	NA	False	NA	NA	False	AATAAA	-30	NA	179348290	179347809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_179347800_179348300
ES_00002020	chr1	-	8454	37	NNC	ENSMUSG00000026491.14	novel	8506	36	NA	NA	0	57031	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.2098901618332	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAATAGAAATAATTTA	NA	False	NA	NA	False	NA	NA	NA	179631171	179515427	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_179515456_179572464_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
ES_00002021	chr1	-	8506	36	FSM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_19	31.9958415665383	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGTCAAGTTAATAATTA	NA	False	NA	-1	True	AATAAA	-19	NA	179631245	179572458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
ES_00002024	chr1	-	510	1	FSM	ENSMUSG00000104418.2	ENSMUST00000193272.2	460	1	-24	-26	-24	26	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCCAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	179753000	179752490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_179752500_179753000
ES_00002025	chr1	-	3993	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	33	0	-6	0	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGGTCATTTTGTTTT	3898	False	NA	NA	False	AATAAA	-16	NA	180023552	179992802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
ES_00002033	chr1	-	241	1	FSM	ENSMUSG00000103979.2	ENSMUST00000193226.2	177	1	6	-70	6	70	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTAGTTTACTTAATG	NA	False	NA	NA	False	NA	NA	NA	180682017	180681776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_180681800_180682000
ES_00002038	chr1	-	1941	14	NNC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	49	-17995	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_9	183.73082961626	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTATGTGTATGAGT	NA	False	NA	NA	False	ATTAAA	-14	NA	180971720	180941541	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962626_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ES_00002040	chr1	-	6973	16	NNC	ENSMUSG00000038733.15	novel	7045	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.1627601362475	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTTGCGTTCCATCTC	NA	False	NA	-1	True	AATAAA	-21	NA	181039543	181000790	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_181001379_181001418_181001680_181001713_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036567_181036673_181036777_181036878_181038640
ES_00002041	chr1	-	7070	14	FSM	ENSMUSG00000038733.15	ENSMUST00000237749.2	7068	14	0	-2	0	2	multi-exon	FALSE	canonical	3	48	junction_11	31.9711408328487	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTTGCGTTCCATCTC	NA	False	NA	-1	True	AATAAA	-21	NA	181039566	181000790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036567_181036673_181036777_181036878_181038640
ES_00002042	chr1	-	10201	14	NIC	ENSMUSG00000038733.15	novel	6452	14	NA	NA	-362	2	intron_retention	FALSE	canonical	3	44	junction_1	34.0406996222056	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTTGCGTTCCATCTC	NA	False	NA	-1	True	AATAAA	-21	NA	181039928	181000790	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_181008214_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ES_00002043	chr1	-	476	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	-65	-78	-65	78	mono-exon	FALSE	NA	NA	NA	NA	NA	661	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTCTGGGCTTGAGAGG	NA	False	NA	NA	False	NA	NA	NA	181069950	181069474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181069500_181070000
ES_00002044	chr1	-	3530	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	-20	0	20	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	-30	True	AATAAA	-21	NA	181669944	181642879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ES_00002046	chr1	-	11229	14	FSM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_9	54.2155461448742	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTATTCATTTTTC	5962	False	NA	0	True	AATAAA	-24	NA	181847226	181723948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
ES_00002048	chr1	-	2832	14	FSM	ENSMUSG00000022995.17	ENSMUST00000195059.6	2832	14	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	106.013787202057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGATTTTTTTCCAGAG	5962	False	NA	-27	True	AATAAA	-14	NA	181847226	181733077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181750066_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
ES_00002049	chr1	-	2218	1	FSM	ENSMUSG00000022995.17	ENSMUST00000192768.2	1890	1	-365	37	-365	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGAAAAACCAAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	181740527	181738309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181738300_181740500
ES_00002052	chr1	-	499	1	FSM	ENSMUSG00000103317.2	ENSMUST00000191884.2	2225	1	1185	541	1185	-541	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTCAAGCTCTATATGT	NA	False	NA	NA	False	NA	NA	NA	181796303	181795804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181795800_181796300
ES_00002055	chr1	-	2059	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	-24	-630	-24	630	multi-exon	FALSE	canonical	3	1179	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTCACTCCTAAGAGCTC	NA	False	NA	NA	False	NA	NA	NA	182110393	182105431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_182107284_182110186
ES_00002056	chr1	-	4925	5	FSM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	16.5604951616792	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTTCATTCTTTCGA	NA	False	NA	-3	True	AATAAA	-17	NA	182169183	182140666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_182144851_182145374_182145571_182153818_182153958_182157438_182157549_182168887
ES_00002058	chr1	-	3234	21	FSM	ENSMUSG00000026509.16	ENSMUST00000068505.10	3225	21	0	-9	0	9	multi-exon	FALSE	canonical	0	0	junction_10	16.2692962355475	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTGTTTTTCTTCATA	NA	False	NA	3	True	AATAAA	-22	NA	182345089	182294815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_182295801_182297743_182297803_182298243_182298361_182300085_182300165_182300488_182300558_182301446_182301512_182304815_182304874_182306112_182306179_182307270_182307308_182309011_182309224_182310100_182310113_182311767_182311938_182314108_182314270_182315279_182315355_182316558_182316645_182317529_182317614_182318431_182318601_182319626_182319761_182320316_182320436_182339771_182339842_182344682
ES_00002060	chr1	-	4901	9	FSM	ENSMUSG00000030768.13	ENSMUST00000195372.2	4901	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	30.8666486681013	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTCTCCGTCGTTCT	NA	False	NA	2	True	AATAAA	-34	NA	183003054	182867829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_183002886
ES_00002061	chr1	-	1454	9	ISM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	-22	9925	15	2	5prime_fragment	FALSE	canonical	3	56	junction_6	14.115040736746	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGCCTCTGCCTTGCTG	NA	False	NA	0	True	AATAAA	-15	NA	183003071	182877754	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
ES_00002065	chr1	-	3419	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	0	-6	0	4	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGGATTTATGTGGTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	183078800	183057911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
ES_00002069	chr1	-	3015	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	62	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	-1	True	CATAAA	-18	NA	183126895	183107681	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
ES_00002070	chr1	-	6335	28	FSM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	0	-5	0	5	multi-exon	FALSE	canonical	3	46	junction_27	39.9558741524534	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGCTGATTCTTTGGG	4043	False	NA	4	True	CATAAA	-23	NA	183150894	183107676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604_183140360_183143388_183143476_183146987_183147122_183150737
ES_00002071	chr1	-	2167	4	FSM	ENSMUSG00000039377.8	ENSMUST00000048572.7	2278	4	68	43	68	-36	multi-exon	TRUE	canonical	2	3	junction_3	0.471404520791032	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTAACTTGTAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	184464748	184459379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_184460189_184462056_184462242_184462887_184463068_184463755
ES_00002074	chr1	-	630	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162261.8	633	5	13	-10	3	0	multi-exon	FALSE	canonical	3	51	junction_4	388.369910652203	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACACCCGCTATTACGT	NA	False	NA	-14	True	AATAAA	-27	NA	184559451	184545878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559304
ES_00002075	chr1	-	472	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162866.7	475	5	3	0	3	0	multi-exon	FALSE	canonical	3	52	junction_4	387.938461614726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGTGAGGCTGTATAA	NA	False	NA	-92	True	AAGAAA	-18	NA	184559451	184545956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559384
ES_00002077	chr1	-	3024	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	17	-6	17	6	multi-exon	FALSE	canonical	3	22	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCCTTCCCTGTTCTG	NA	False	NA	3	True	AATAAA	-34	NA	184615398	184604116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_184606625_184614882
ES_00002078	chr1	-	4229	18	FSM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	0	-8	0	8	multi-exon	FALSE	canonical	3	41	junction_17	8.12446431558567	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTTTGCTGCTTGGA	3256	False	NA	2	True	AATAAA	-34	NA	184731767	184628977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_184631076_184633005_184633051_184637599_184637852_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012_184658084_184660230_184660297_184661518_184661568_184675402_184675457_184676993_184677198_184731618
ES_00002080	chr1	-	1004	1	FSM	ENSMUSG00000102546.2	ENSMUST00000194568.2	802	1	-30	-172	-30	172	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCATAACTTATAAGAACA	NA	False	NA	NA	False	AATAAA	-25	NA	185611112	185610108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_185610100_185611100
ES_00002083	chr1	-	1321	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTATCTTTTCTATT	NA	False	NA	-30	True	CATAAA	-6	NA	186481555	186453174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ES_00002086	chr1	-	3709	18	FSM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	0	-3	0	3	multi-exon	FALSE	canonical	3	162	junction_13	20.9446461104513	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTCTTCAGTTATTTAA	NA	False	NA	1	True	ATTAAA	-23	NA	188740037	188703288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
ES_00002088	chr1	-	201	1	Genic_Genomic	ENSMUSG00000026608.14	novel	NA	NA	NA	NA	-6	-2433	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGCACACACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	188729919	188729718	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_188729700_188729900
ES_00002089	chr1	-	381	1	FSM	ENSMUSG00000102824.2	ENSMUST00000191699.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGACGCGCTTAGACAGAC	NA	False	NA	NA	False	AAGAAA	-38	NA	189010020	189009639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_189009600_189010000
ES_00002090	chr1	-	11130	18	FSM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_7	50.2666247525517	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAACAGGCTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	189420283	189372802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
ES_00002091	chr1	-	3001	12	FSM	ENSMUSG00000026605.15	ENSMUST00000165962.2	3001	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	46.289245131845	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAAAAAAAACATTGAAG	NA	False	NA	NA	False	AATGAA	-16	NA	189420283	189390921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412468_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
ES_00002094	chr1	-	4797	4	FSM	ENSMUSG00000089872.11	ENSMUST00000159823.8	4792	4	0	-5	0	5	multi-exon	FALSE	canonical	3	5	junction_3	21.3124898175277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTTCCTTTCATACTGCA	NA	False	NA	3	True	AATAAA	-17	NA	190576781	190528260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190532779_190541079_190541213_190542270_190542319_190576683
ES_00002096	chr1	-	3461	11	NNC	ENSMUSG00000066595.10	novel	4040	10	NA	NA	490	-22	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	11.1427106217473	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATTTATTTTTTTAGT	NA	False	NA	-24	True	NA	NA	NA	190757674	190738068	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190752632_190752760_190753272_190753454_190757573
ES_00002098	chr1	-	2197	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	1	-1002	0	986	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTCTTGGAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	190795101	190777036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ES_00002099	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	False	NA	12	True	TATAAA	-32	NA	190795129	190778022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ES_00002100	chr1	-	1989	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	0	-5	0	5	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCACTGGTTTCTGCT	NA	False	NA	5	True	AATAAA	-28	NA	190915537	190902487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
ES_00002101	chr1	-	544	3	NIC	ENSMUSG00000037499.10	novel	742	4	NA	NA	94	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	67.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	False	NA	0	True	AATAAA	-19	NA	191050297	191038985	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_191039287_191043656_191043718_191050115
ES_00002102	chr1	-	669	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	73	0	73	0	multi-exon	FALSE	canonical	3	115	junction_1	10.5303793326209	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	False	NA	0	True	AATAAA	-19	NA	191050318	191038985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
ES_00002106	chr1	-	3786	1	FSM	ENSMUSG00000102246.2	ENSMUST00000192556.2	1008	1	-2613	-165	-2613	165	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCATTCAGGAGGCAGGG	9211	False	NA	NA	False	ATTAAA	-41	NA	191271617	191267831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191267800_191271600
ES_00002107	chr1	-	4174	15	NIC	ENSMUSG00000037474.14	novel	4212	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	124.936249049388	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGGAAGAGTGTGTT	NA	False	NA	-6	True	NA	NA	NA	191307625	191269476	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300517_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ES_00002108	chr1	-	4212	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGGAAGAGTGTGTT	NA	False	NA	-6	True	NA	NA	NA	191307656	191269476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ES_00002110	chr1	-	792	1	FSM	ENSMUSG00000026637.15	ENSMUST00000194408.2	1414	1	611	11	611	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGACAACAAGGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	191729968	191729176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191729200_191730000
ES_00002113	chr1	-	1843	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	1	0	1	0	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTACCAGTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	191822358	191785086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ES_00002114	chr1	-	1819	12	FSM	ENSMUSG00000037375.17	ENSMUST00000128619.8	1819	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	7.07457325757953	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	192453521	192179018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_192179157_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
ES_00002116	chr1	-	2711	11	NIC	ENSMUSG00000037375.17	novel	2839	12	NA	NA	1	3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_10	7.21387551874857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTCTTGATACTTC	NA	False	NA	NA	False	AATAAA	-17	NA	192453530	192195132	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192453287
ES_00002117	chr1	-	3350	4	FSM	ENSMUSG00000016262.15	ENSMUST00000155579.8	3350	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.69967317119759	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTTTTTTAAAATTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	192538064	192526795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_192529524_192532058_192532175_192533259_192533452_192537750
ES_00002118	chr1	-	9282	9	FSM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	0	-8	0	8	multi-exon	FALSE	canonical	2	2	junction_5	6.65206734782504	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTCACATTTATGTGAAA	128	False	NA	NA	False	AATAAA	-26	NA	192718083	192573532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192665827_192667220_192669025_192669191_192709277_192709326_192717930
ES_00002127	chr1	-	1326	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATCTAGGTGTGTGGTT	NA	False	NA	-8	True	AATAAA	-12	NA	194813865	194786104	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ES_00002128	chr1	-	1648	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	0	3	0	-3	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGGTGTGTGGTTCATA	NA	False	NA	-4	True	AATAAA	-16	NA	194813869	194786100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
ES_00002130	chr1	-	914	3	FSM	ENSMUSG00000016481.16	ENSMUST00000193719.2	3859	3	0	2945	0	334	multi-exon	FALSE	canonical	3	104	junction_2	96	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACTTTGTGGGAAAGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	194813842	194811167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_194811555_194812137_194812318_194813495
ES_00002135	chr1	+	361	1	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGACGAGAAACGGTCTT	NA	False	NA	NA	False	NA	NA	NA	4057892	4058253	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_4057900_4058300
ES_00002137	chr1	+	301	1	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	540	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAGAATTAGTTTT	NA	False	NA	NA	False	AATAAA	-33	NA	4842482	4842783	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_4842500_4842800
ES_00002139	chr1	+	420	1	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACAACTTATGAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	6082112	6082532	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_6082100_6082500
ES_00002141	chr1	+	213	1	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTATTGGTAGGCACTG	5069	False	NA	NA	False	NA	NA	NA	7116722	7116935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_7116700_7116900
ES_00002142	chr1	+	301	1	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATAATAATAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-30	NA	7249681	7249982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_7249700_7250000
ES_00002147	chr1	+	429	1	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	8013115	8013544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_8013100_8013500
ES_00002150	chr1	+	204	1	Intergenic	novelGene_13	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATATATTCTAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	9861013	9861217	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_9861000_9861200
ES_00002151	chr1	+	3391	1	Intergenic	novelGene_15	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAGAGTATTCCTGCTAT	8251	False	NA	NA	False	NA	NA	NA	10888539	10891930	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_10888500_10891900
ES_00002153	chr1	+	211	1	Intergenic	novelGene_19	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGGCAGGGTAATCAAG	5670	False	NA	NA	False	NA	NA	NA	13394511	13394722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_13394500_13394700
ES_00002158	chr1	+	219	1	Intergenic	novelGene_21	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2415	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCATTTCTTGATGCTA	NA	False	NA	NA	False	NA	NA	NA	17304796	17305015	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_17304800_17305000
ES_00002159	chr1	+	228	1	Intergenic	novelGene_25	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AAAACA	-21	NA	22446157	22446385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_22446200_22446400
ES_00002160	chr1	+	207	1	Intergenic	novelGene_27	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCACTATGTCTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	25879932	25880139	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_25879900_25880100
ES_00002161	chr1	+	217	1	Intergenic	novelGene_29	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACATCTTGGAGGTGAA	NA	False	NA	NA	False	NA	NA	NA	29776288	29776505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_29776300_29776500
ES_00002163	chr1	+	237	1	Intergenic	novelGene_32	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATTTAGTTCTTTTAGC	6699	False	NA	NA	False	NA	NA	NA	34131323	34131560	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_34131300_34131600
ES_00002164	chr1	+	542	1	Intergenic	novelGene_34	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCTTCAGAGCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	34146549	34147091	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_34146500_34147100
ES_00002165	chr1	+	279	1	Intergenic	novelGene_35	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34835607	34835886	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_34835600_34835900
ES_00002168	chr1	+	219	1	Intergenic	novelGene_39	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2959	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACAAAGCTTTTGTACGA	NA	False	NA	NA	False	NA	NA	NA	38111257	38111476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_38111300_38111500
ES_00002169	chr1	+	290	1	Intergenic	novelGene_41	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAAAAAACTAT	8017	False	NA	NA	False	NA	NA	NA	39360461	39360751	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_39360500_39360800
ES_00002173	chr1	+	322	1	Intergenic	novelGene_47	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTTACTTAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-24	NA	43928565	43928887	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_43928600_43928900
ES_00002174	chr1	+	264	1	Intergenic	novelGene_48	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCCACATACTTATGG	NA	False	NA	NA	False	NA	NA	NA	43930810	43931074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_43930800_43931100
ES_00002175	chr1	+	236	1	Intergenic	novelGene_49	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCTATTTTTTCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	43932165	43932401	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_43932200_43932400
ES_00002177	chr1	+	252	1	Intergenic	novelGene_52	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGGTCCTCTACCCCTA	NA	False	NA	NA	False	NA	NA	NA	45307819	45308071	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_45307800_45308100
ES_00002178	chr1	+	504	1	Intergenic	novelGene_54	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAGAGGTCCTGCTGAA	NA	False	NA	NA	False	NA	NA	NA	45599138	45599642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_45599100_45599600
ES_00002180	chr1	+	362	1	Intergenic	novelGene_57	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTTAATAGTAAATACCTA	NA	False	NA	NA	False	TATAAA	-12	NA	49594742	49595104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_49594700_49595100
ES_00002181	chr1	+	217	1	Intergenic	novelGene_58	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	49954866	49955083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_49954900_49955100
ES_00002183	chr1	+	219	1	Intergenic	novelGene_64	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAACCTCTTCTAAAGC	145	False	NA	NA	False	NA	NA	NA	54926318	54926537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_54926300_54926500
ES_00002185	chr1	+	210	1	Intergenic	novelGene_68	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1040	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGCCTTTAATAAAGTGC	5711	False	NA	NA	False	NA	NA	NA	58189209	58189419	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_58189200_58189400
ES_00002186	chr1	+	244	1	Intergenic	novelGene_73	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCTTGGTATATTTCT	NA	False	NA	NA	False	NA	NA	NA	60091192	60091436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_60091200_60091400
ES_00002189	chr1	+	223	1	Intergenic	novelGene_77	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGCATTTTTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	63219682	63219905	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_63219700_63219900
ES_00002190	chr1	+	202	1	Intergenic	novelGene_80	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTAACAGTTAGCCATTT	8757	False	NA	NA	False	NA	NA	NA	63282025	63282227	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_63282000_63282200
ES_00002191	chr1	+	212	1	Intergenic	novelGene_81	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCACTCTTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	63813253	63813465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_63813300_63813500
ES_00002192	chr1	+	217	1	Intergenic	novelGene_83	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCTAGTCCCCAATAACC	NA	False	NA	NA	False	NA	NA	NA	71947916	71948133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_71947900_71948100
ES_00002193	chr1	+	216	1	Intergenic	novelGene_87	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	266	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCCCATTCTTGAGAA	1623	False	NA	NA	False	NA	NA	NA	74858262	74858478	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_74858300_74858500
ES_00002195	chr1	+	202	1	Intergenic	novelGene_89	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAACCCTAGCTAATTAA	NA	False	NA	NA	False	NA	NA	NA	80239211	80239413	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_80239200_80239400
ES_00002199	chr1	+	226	1	Intergenic	novelGene_93	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTACAAGAGTCACAAGGAA	NA	False	NA	NA	False	NA	NA	NA	84309927	84310153	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_84309900_84310200
ES_00002201	chr1	+	310	1	Intergenic	novelGene_96	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTCTTTATTATAGTCT	NA	False	NA	NA	False	NA	NA	NA	84938967	84939277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_84939000_84939300
ES_00002203	chr1	+	272	1	Intergenic	novelGene_97	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCTTTCAGTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	85188006	85188278	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_85188000_85188300
ES_00002206	chr1	+	1923	1	Intergenic	novelGene_109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCTAGACGACCAAAACCA	NA	False	NA	NA	False	NA	NA	NA	90553541	90555464	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_90553500_90555500
ES_00002209	chr1	+	230	1	Intergenic	novelGene_112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTATTTTTTACGGCGA	NA	False	NA	NA	False	NA	NA	NA	93823671	93823901	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_93823700_93823900
ES_00002210	chr1	+	205	1	Intergenic	novelGene_113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	93920920	93921125	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_93920900_93921100
ES_00002211	chr1	+	219	1	Intergenic	novelGene_116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTCATTCTTATCTGC	NA	False	NA	NA	False	NA	NA	NA	97609523	97609742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_97609500_97609700
ES_00002212	chr1	+	365	1	Intergenic	novelGene_118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTGTGCAAGGGCACC	NA	False	NA	NA	False	NA	NA	NA	98705097	98705462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_98705100_98705500
ES_00002213	chr1	+	770	1	Intergenic	novelGene_119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCCAGGAGATGTTAATT	NA	False	NA	NA	False	AATAAA	-43	NA	99117326	99118096	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_99117300_99118100
ES_00002214	chr1	+	234	1	Intergenic	novelGene_120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTTTTACTTCAGTGC	NA	False	NA	NA	False	NA	NA	NA	103498240	103498474	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_103498200_103498500
ES_00002215	chr1	+	202	1	Intergenic	novelGene_121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTCATCTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	105418588	105418790	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_105418600_105418800
ES_00002216	chr1	+	233	1	Intergenic	novelGene_122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGATTTTAATATTCCAG	NA	False	NA	NA	False	NA	NA	NA	105435600	105435833	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_105435600_105435800
ES_00002217	chr1	+	458	1	Intergenic	novelGene_123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGAAAGCATTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	106966027	106966485	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_106966000_106966500
ES_00002220	chr1	+	859	1	Intergenic	novelGene_125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCAGCTTGCAGTTTGAC	NA	False	NA	NA	False	NA	NA	NA	111619632	111620491	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_111619600_111620500
ES_00002226	chr1	+	219	1	Intergenic	novelGene_129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGAGTTCACGCTCGG	NA	False	NA	NA	False	NA	NA	NA	118241382	118241601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_118241400_118241600
ES_00002227	chr1	+	206	1	Intergenic	novelGene_130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTTTTTAATATTGCT	NA	False	NA	NA	False	NA	NA	NA	119599916	119600122	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_119599900_119600100
ES_00002229	chr1	+	207	1	Intergenic	novelGene_134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	526	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAATGTGTAAGTAGGCT	NA	False	NA	NA	False	NA	NA	NA	127857849	127858056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_127857800_127858100
ES_00002230	chr1	+	595	1	Intergenic	novelGene_135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3700	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGAAGGCTCGATGTAG	NA	False	NA	NA	False	NA	NA	NA	129723684	129724279	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_129723700_129724300
ES_00002231	chr1	+	210	1	Intergenic	novelGene_136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	678	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGGGCCTTTTAACACC	NA	False	NA	NA	False	NA	NA	NA	131043954	131044164	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_131044000_131044200
ES_00002233	chr1	+	422	1	Intergenic	novelGene_142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAAAGGTCTTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	133625076	133625498	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_133625100_133625500
ES_00002234	chr1	+	224	1	Intergenic	novelGene_146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGGAAATGATGTAGCTA	8466	False	NA	NA	False	NA	NA	NA	135164037	135164261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_135164000_135164300
ES_00002236	chr1	+	204	1	Intergenic	novelGene_150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCAAAATACTTAGGTGC	551	False	NA	NA	False	NA	NA	NA	136260223	136260427	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136260200_136260400
ES_00002240	chr1	+	496	1	Intergenic	novelGene_159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAATTATTATTCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	139975519	139976015	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_139975500_139976000
ES_00002242	chr1	+	233	1	Intergenic	novelGene_161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGTGAAGGGAAAATGAGG	NA	False	NA	NA	False	NA	NA	NA	152763779	152764012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_152763800_152764000
ES_00002243	chr1	+	238	1	Intergenic	novelGene_164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTTATCACGACCATAT	NA	False	NA	NA	False	NA	NA	NA	153376580	153376818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_153376600_153376800
ES_00002244	chr1	+	256	1	Intergenic	novelGene_165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCTTTCTTTATCTAGAG	8234	False	NA	NA	False	NA	NA	NA	153385203	153385459	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_153385200_153385500
ES_00002245	chr1	+	215	1	Intergenic	novelGene_166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTAAACTCTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	153539082	153539297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_153539100_153539300
ES_00002246	chr1	+	216	1	Intergenic	novelGene_167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTCTTCTAGATAGTTT	864	False	NA	NA	False	NA	NA	NA	153741401	153741617	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_153741400_153741600
ES_00002247	chr1	+	202	1	Intergenic	novelGene_169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTGTATTTGTAAAGT	NA	False	NA	8	True	NA	NA	NA	155899490	155899692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_155899500_155899700
ES_00002248	chr1	+	210	1	Intergenic	novelGene_171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTTTCTTTTTAGACAG	NA	False	NA	NA	False	NA	NA	NA	156015458	156015668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_156015500_156015700
ES_00002249	chr1	+	252	1	Intergenic	novelGene_175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGGCGTTTTAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	156385514	156385766	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_156385500_156385800
ES_00002251	chr1	+	225	1	Intergenic	novelGene_179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATTACTATCTCTTAA	NA	False	NA	NA	False	NA	NA	NA	157163933	157164158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_157163900_157164200
ES_00002253	chr1	+	401	1	Intergenic	novelGene_180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGTTGCCTGTAGAAG	NA	False	NA	7	True	AATAAA	-33	NA	159121371	159121772	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_159121400_159121800
ES_00002254	chr1	+	236	1	Intergenic	novelGene_182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTATCTTTTAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	161116132	161116368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_161116100_161116400
ES_00002255	chr1	+	216	1	Intergenic	novelGene_183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCTTTTTAAGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	161717035	161717251	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_161717000_161717300
ES_00002256	chr1	+	555	1	Intergenic	novelGene_185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGTGGTCAAATTCAAAGC	9459	False	NA	NA	False	AATAGA	-42	NA	162597670	162598225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_162597700_162598200
ES_00002257	chr1	+	238	1	Intergenic	novelGene_187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCCAAGGAGGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	164024518	164024756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_164024500_164024800
ES_00002259	chr1	+	208	1	Intergenic	novelGene_189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	495	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGACCTTGGGGAAGTCA	NA	False	NA	NA	False	AAAACA	-1	NA	165822783	165822991	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_165822800_165823000
ES_00002262	chr1	+	535	1	Intergenic	novelGene_192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACAGGATTTTCTATCCT	NA	False	NA	NA	False	NA	NA	NA	170142262	170142797	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_170142300_170142800
ES_00002263	chr1	+	256	1	Intergenic	novelGene_196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAATATAACCTCCCTAT	NA	False	NA	NA	False	NA	NA	NA	170914948	170915204	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_170914900_170915200
ES_00002264	chr1	+	202	1	Intergenic	novelGene_197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAGCCGGACTCAG	NA	False	NA	NA	False	NA	NA	NA	170970794	170970996	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_170970800_170971000
ES_00002266	chr1	+	218	1	Intergenic	novelGene_201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	409	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAATTTTATATTTGATG	NA	False	NA	NA	False	NA	NA	NA	171138201	171138419	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171138200_171138400
ES_00002267	chr1	+	2290	1	Intergenic	novelGene_202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	607	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTGTGGGTGATTTTG	NA	False	NA	NA	False	NA	NA	NA	171139984	171142274	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171140000_171142300
ES_00002271	chr1	+	244	1	Intergenic	novelGene_209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAACAAACCTCTAGGAC	NA	False	NA	NA	False	GGGGCT	-44	NA	172274102	172274346	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_172274100_172274300
ES_00002273	chr1	+	227	1	Intergenic	novelGene_210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCGAAAGAAGTTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	174120446	174120673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_174120400_174120700
ES_00002274	chr1	+	204	1	Intergenic	novelGene_211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAATAAAGAGACGAG	NA	False	NA	NA	False	ATTAAA	-12	NA	177630621	177630825	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_177630600_177630800
ES_00002275	chr1	+	203	1	Intergenic	novelGene_212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGGAGAACACTGCTAAA	NA	False	NA	NA	False	NA	NA	NA	177962596	177962799	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_177962600_177962800
ES_00002277	chr1	+	316	1	Intergenic	novelGene_213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	ATTAAA	-34	NA	178127636	178127952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_178127600_178128000
ES_00002278	chr1	+	248	1	Intergenic	novelGene_214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGGTTCTATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	179476161	179476409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_179476200_179476400
ES_00002279	chr1	+	238	1	Intergenic	novelGene_216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTAAGATTTATTTA	4052	False	NA	NA	False	NA	NA	NA	180378991	180379229	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_180379000_180379200
ES_00002280	chr1	+	233	1	Intergenic	novelGene_220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	180846347	180846580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_180846300_180846600
ES_00002282	chr1	+	209	1	Intergenic	novelGene_221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAACAACAAAAAGGTAAC	NA	False	NA	NA	False	NA	NA	NA	181018849	181019058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_181018800_181019100
ES_00002283	chr1	+	201	1	Intergenic	novelGene_226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCGGTTGTTTTAAGTAG	NA	False	NA	NA	False	NA	NA	NA	185177583	185177784	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_185177600_185177800
ES_00002285	chr1	+	230	1	Intergenic	novelGene_228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATACATAGCAATTAAGT	NA	False	NA	NA	False	AATAAA	-7	NA	190756221	190756451	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_190756200_190756500
ES_00002286	chr1	+	207	1	Intergenic	novelGene_229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCACATTGATCCTCTA	1743	False	NA	NA	False	AATAAA	-20	NA	190762704	190762911	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_190762700_190762900
ES_00002287	chr1	+	217	1	Intergenic	novelGene_232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGCACAATCCTA	NA	False	NA	NA	False	NA	NA	NA	192936419	192936636	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_192936400_192936600
ES_00002289	chr1	+	242	1	Intergenic	novelGene_233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCACAGTTTCTTACCC	NA	False	NA	NA	False	NA	NA	NA	194225071	194225313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_194225100_194225300
ES_00002290	chr1	+	3528	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-984	0	at_least_one_novel_splicesite	TRUE	canonical	3	330	junction_4	508.177450294338	154	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	4927052	4968128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959682_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ES_00002291	chr1	+	5802	14	NIC	ENSMUSG00000025907.15	novel	7607	24	NA	NA	56	624	intron_retention	FALSE	canonical	3	4	junction_2	38.7446503274205	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGTTTCACATGATGC	NA	False	NA	NA	False	AATAAA	-25	NA	6284942	6322106	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_6285182_6298163_6298274_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
ES_00002293	chr1	+	707	1	FSM	ENSMUSG00000103355.2	ENSMUST00000193588.2	639	1	-72	4	-72	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAACAAGGATTGAAACTG	NA	False	NA	NA	False	NA	NA	NA	6450545	6451252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_6450500_6451300
ES_00002297	chr1	+	9866	3	FSM	ENSMUSG00000051285.18	ENSMUST00000182892.8	4207	3	-4646	-1013	572	3	multi-exon	FALSE	canonical	3	143	junction_2	5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGAGGTGTTCTTGA	NA	False	NA	8	True	NA	NA	NA	7225662	7243855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_7231288_7233471_7233596_7239738
ES_00002298	chr1	+	389	1	NIC	ENSMUSG00000103067.2	novel	2596	3	NA	NA	457	-19336	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATCCAGTCCAGTGACAG	NA	False	NA	NA	False	NA	NA	NA	7568648	7569037	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_7568600_7569000
ES_00002299	chr1	+	217	1	FSM	ENSMUSG00000103933.2	ENSMUST00000191876.2	198	1	79	-98	79	98	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTGGTTAATGATAACAA	NA	False	NA	NA	False	AGTAAA	-1	NA	8886144	8886361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_8886100_8886400
ES_00002301	chr1	+	1993	12	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	18	27	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	25.4879650744496	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTATGCTTCCAGGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	9618297	9647153	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_9618377_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ES_00002304	chr1	+	1400	14	NIC	ENSMUSG00000025915.15	novel	3680	17	NA	NA	-16	11	combination_of_known_splicesites	TRUE	canonical	3	9	junction_13	33.4494230940601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTATTTAGTGAAACAT	9847	False	NA	NA	False	ATTAAA	-20	NA	9918529	9959313	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9959094
ES_00002306	chr1	+	225	2	Intergenic	novelGene_14	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGTATTACTTCTTAC	NA	False	NA	23	True	AATAGA	-9	NA	10051637	10055309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_10051688_10055134
ES_00002312	chr1	+	2969	1	FSM	ENSMUSG00000048960.14	ENSMUST00000190935.2	3084	1	87	28	87	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAGGTAGAAAACACAT	NA	False	NA	NA	False	NA	NA	NA	11063828	11066797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_11063800_11066800
ES_00002314	chr1	+	6808	7	FSM	ENSMUSG00000057715.14	ENSMUST00000135014.8	6451	7	-157	-200	0	10	multi-exon	FALSE	canonical	3	15	junction_4	4.57043640026736	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATGTTATATGTATGTT	NA	False	NA	NA	False	AATAAA	-21	NA	11484335	11672045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374
ES_00002315	chr1	+	2251	1	FSM	ENSMUSG00000103825.2	ENSMUST00000194502.2	2471	1	193	27	193	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCGTGAGCACTCCTACT	NA	False	NA	NA	False	NA	NA	NA	11487334	11489585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_11487300_11489600
ES_00002316	chr1	+	434	1	FSM	ENSMUSG00000097628.2	ENSMUST00000181461.2	807	1	211	162	211	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCTGAGACTTCAACAG	NA	False	NA	NA	False	NA	NA	NA	12636011	12636445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_12636000_12636400
ES_00002318	chr1	+	650	2	Genic_Genomic	ENSMUSG00000069620.7	novel	321	1	NA	NA	-60419	161	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAAATTGAAATGAT	1932	False	NA	NA	False	NA	NA	NA	13071829	13132730	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_13072004_13132254
ES_00002319	chr1	+	216	1	Intergenic	novelGene_17	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATAGTACGGGGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	13121888	13122104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_13121900_13122100
ES_00002321	chr1	+	2608	11	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	-2448	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	308.297275369083	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	False	NA	NA	False	AATAAA	-24	NA	15873421	15914276	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_15873599_15875706_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ES_00002322	chr1	+	1599	9	FSM	ENSMUSG00000025925.15	ENSMUST00000027057.8	1581	9	-18	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	336.315978656977	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875869	15913694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ES_00002323	chr1	+	1650	10	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	325.647048197892	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTATTCCATGTCTATA	NA	False	NA	19	True	ATTAAA	-24	NA	15875869	15913662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889878_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ES_00002324	chr1	+	645	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	-15	2	-15	-2	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGTTCTGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	16758641	16779833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
ES_00002326	chr1	+	218	1	FSM	ENSMUSG00000102633.2	ENSMUST00000191648.2	2100	1	1439	443	1439	-443	mono-exon	FALSE	NA	NA	NA	NA	NA	8233	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTGGTTATTTACAACA	NA	False	NA	NA	False	NA	NA	NA	21306384	21306602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_21306400_21306600
ES_00002327	chr1	+	1202	8	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	-5257	200	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	33.7656992964694	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCGAACATTGTCATTCA	NA	False	NA	22	True	AATAAA	-28	NA	21318487	21335445	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_21318604_21319974_21320083_21324907_21325048_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ES_00002328	chr1	+	2785	1	FSM	ENSMUSG00000025934.16	ENSMUST00000190711.2	2792	1	-238	245	-238	-245	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGCCCAGGCACATCCCA	NA	False	NA	NA	False	NA	NA	NA	21323506	21326291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_21323500_21326300
ES_00002329	chr1	+	386	1	FSM	ENSMUSG00000100775.2	ENSMUST00000190910.2	347	1	-51	12	-51	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTATTTCATCTTTGAA	NA	False	NA	NA	False	AATAAA	-45	NA	23332758	23333144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_23332800_23333100
ES_00002330	chr1	+	1318	1	FSM	ENSMUSG00000100481.2	ENSMUST00000190159.2	1789	1	31	440	31	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTGAAATATCCTGACCT	NA	False	NA	NA	False	TTTAAA	-35	NA	33140018	33141336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_33140000_33141300
ES_00002332	chr1	+	4146	9	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	49.6758240998577	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	33759218	33781645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775200_33775268_33775880_33775964_33777368_33777462_33778333
ES_00002333	chr1	+	17843	94	NNC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-31321	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	45.4862375143762	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTATTTGAAATGA	2056	False	NA	24	True	AATAAA	-25	NA	34013639	34347742	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_34013806_34045271_34045480_34125322_34125385_34153013_34153104_34155198_34155277_34156512_34156606_34174170_34174338_34191282_34191396_34191493_34191601_34193593_34193714_34195679_34195776_34195861_34195990_34199700_34199795_34200084_34200240_34202089_34202553_34202706_34202836_34202977_34203056_34203156_34203319_34203407_34203513_34204138_34204235_34205260_34205387_34206019_34206173_34206356_34206512_34206691_34206819_34206903_34207088_34208244_34208403_34208830_34209010_34209440_34209580_34210196_34210391_34211263_34211427_34212082_34212167_34213195_34213304_34213777_34213877_34223096_34223226_34225042_34225132_34225899_34226033_34236281_34236435_34237598_34237833_34238372_34238640_34239950_34240497_34241525_34241703_34247634_34247759_34250234_34250444_34251302_34251621_34251982_34252150_34253614_34253772_34254566_34254694_34256890_34256954_34257415_34257658_34258476_34258607_34262884_34263085_34264589_34265086_34266855_34268328_34281699_34281862_34283424_34283596_34286729_34286897_34288559_34288720_34288884_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ES_00002338	chr1	+	1013	4	FSM	ENSMUSG00000037509.22	ENSMUST00000159059.2	1024	4	11	0	-8	0	multi-exon	FALSE	canonical	3	18	junction_2	6.64997911442	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTACTGAAGCAAGTCGAG	NA	False	NA	NA	False	NA	NA	NA	34840813	34845779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395
ES_00002340	chr1	+	2056	6	FSM	ENSMUSG00000037447.17	ENSMUST00000116629.9	2056	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	8.63481325796916	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGGTGTACAGCACT	NA	False	NA	NA	False	AATAAA	-25	NA	36346834	36359609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36346918_36355289_36355409_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ES_00002341	chr1	+	4204	7	FSM	ENSMUSG00000037447.17	ENSMUST00000115032.8	4640	7	0	436	0	-433	multi-exon	FALSE	canonical	3	8	junction_1	6.46572158042361	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGTTGTTTGGTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	36346834	36361636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36346918_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ES_00002342	chr1	+	1932	1	Genic_Genomic	ENSMUSG00000037408.11	novel	NA	NA	NA	NA	34838	1	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGTGAGCATATAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	36545914	36547846	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_36545900_36547800
ES_00002345	chr1	+	904	3	NNC	ENSMUSG00000050122.20	novel	1636	8	NA	NA	7004	-16016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTACACAACTGTTATCAT	NA	False	NA	NA	False	NA	NA	NA	37081792	37086714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_37082066_37083844_37084290_37086528
ES_00002346	chr1	+	308	2	FSM	ENSMUSG00000050122.20	ENSMUST00000194890.2	374	2	66	0	66	0	multi-exon	FALSE	canonical	3	41	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACGTCAACATCACCAAGGA	NA	False	NA	NA	False	NA	NA	NA	37139677	37148154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_37139908_37148076
ES_00002348	chr1	+	213	1	FSM	ENSMUSG00000026113.18	ENSMUST00000193024.2	2874	1	13	2648	-9	-2648	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGGGCCGAGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	37338986	37339199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_37339000_37339200
ES_00002349	chr1	+	1723	2	FSM	ENSMUSG00000037216.6	ENSMUST00000142670.2	812	2	-12	-899	-12	131	multi-exon	TRUE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACACCATGACCAAAAG	NA	False	NA	NA	False	TTTAAA	-33	NA	37911442	37915440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_37911670_37913944
ES_00002353	chr1	+	4153	29	NIC	ENSMUSG00000026074.16	novel	5632	30	NA	NA	-87	-22	combination_of_known_junctions	FALSE	canonical	3	15	junction_15	25.9180419391432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTCTCCTTTTCCTTTC	NA	False	NA	-38	True	NA	NA	NA	39939985	40064063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00002355	chr1	+	5821	30	NIC	ENSMUSG00000026074.16	novel	3918	31	NA	NA	-115	2	combination_of_known_junctions	FALSE	canonical	3	28	junction_19	23.9127924112531	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCATGGTCATCACTACA	NA	False	NA	NA	False	AATAAA	-25	NA	39939957	40065472	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00002356	chr1	+	5785	30	NIC	ENSMUSG00000026074.16	novel	5632	30	NA	NA	-87	-3	combination_of_known_junctions	FALSE	canonical	3	22	junction_17	26.1967766304635	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTTCATGGTCATCA	NA	False	NA	NA	False	AATAAA	-20	NA	39939985	40065467	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40042916_40043148_40043966_40044074_40045833_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00002357	chr1	+	2088	8	FSM	ENSMUSG00000060679.15	ENSMUST00000185376.7	2088	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	235.756965832986	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTATTGCTATTTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	42890435	42938839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937400
ES_00002358	chr1	+	483	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	43228315	43228798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_43228300_43228800
ES_00002359	chr1	+	1383	2	FSM	ENSMUSG00000066877.12	ENSMUST00000136648.8	1515	2	-16	148	-16	-148	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTAGTGGTATCATT	NA	False	NA	NA	False	NA	NA	NA	43484894	43501206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_43485188_43500116
ES_00002360	chr1	+	2075	1	FSM	ENSMUSG00000103945.2	ENSMUST00000193169.2	1293	1	5	-787	5	787	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTTTCTGGTCCCTTA	NA	False	NA	NA	False	NA	NA	NA	43599437	43601512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_43599400_43601500
ES_00002362	chr1	+	3285	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	3	8	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.7317151150175	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATGAATTTTAATGTCTA	NA	False	NA	22	True	AATAAA	-22	NA	44158162	44183678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_44158336_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ES_00002363	chr1	+	3962	15	NIC	ENSMUSG00000026048.17	novel	3907	15	NA	NA	51	-73	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	22.0829835680169	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTCTTTTTTATTTTC	NA	False	NA	21	True	ATTAAA	-36	NA	44186954	44220347	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_44187311_44196096_44196273_44197303_44197496_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218306_44218392_44219690
ES_00002366	chr1	+	587	2	FSM	ENSMUSG00000062939.12	ENSMUST00000187554.2	607	2	19	1	19	-1	multi-exon	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTTTCTGGTTTTATT	5342	False	NA	NA	False	AATATA	-21	NA	52144626	52146346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_52144936_52146068
ES_00002367	chr1	+	4176	25	NIC	ENSMUSG00000026104.15	novel	5151	25	NA	NA	-3	-83	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.09663853432741	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTATGAGTTGGTTTA	3260	False	NA	NA	False	TATAAA	-16	NA	52158610	52200083	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_52158783_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ES_00002368	chr1	+	377	1	FSM	ENSMUSG00000100007.2	ENSMUST00000179821.3	642	1	-79	344	-79	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTCTTGTTCTGTTCT	NA	False	NA	NA	False	AAAAAG	-38	NA	52623597	52623974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_52623600_52624000
ES_00002372	chr1	+	541	1	FSM	ENSMUSG00000089670.2	ENSMUST00000160730.2	991	1	293	157	293	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCCGATAGCCCTTG	NA	False	NA	NA	False	AATAGA	-28	NA	55166748	55167289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_55166700_55167300
ES_00002373	chr1	+	11480	1	FSM	ENSMUSG00000046994.10	ENSMUST00000061334.10	11294	1	17	-203	17	203	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTCTCTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55276352	55287832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_55276400_55287800
ES_00002374	chr1	+	396	1	FSM	ENSMUSG00000100215.2	ENSMUST00000162574.2	396	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGCCA	NA	False	NA	NA	False	AAAAAG	-4	NA	55374559	55374955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_55374600_55375000
ES_00002376	chr1	+	2785	1	FSM	ENSMUSG00000026036.18	ENSMUST00000185578.2	2785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCACTTTGTAGACCAGG	NA	False	NA	NA	False	NA	NA	NA	58492562	58495347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_58492600_58495300
ES_00002377	chr1	+	1140	1	FSM	ENSMUSG00000097573.3	ENSMUST00000180570.2	2307	1	-22	1189	-22	-1189	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACTGGTTTATTTAGAA	8024	False	NA	NA	False	AGTAAA	-18	NA	59158969	59160109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59159000_59160100
ES_00002378	chr1	+	4532	1	FSM	ENSMUSG00000041075.9	ENSMUST00000114246.4	4532	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGTGAATGTTTATTTAC	5354	False	NA	NA	False	AATAAA	-15	NA	59521582	59526114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59521600_59526100
ES_00002379	chr1	+	351	4	FSM	ENSMUSG00000047361.17	ENSMUST00000191051.2	348	4	-3	0	-3	0	multi-exon	FALSE	canonical	2	6	junction_1	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGAAGAAAGGGGCCTGG	NA	False	NA	NA	False	AAGAAA	-39	NA	59658569	59667402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59658605_59664245_59664337_59666615_59666767_59667328
ES_00002381	chr1	+	219	2	FSM	ENSMUSG00000067336.7	ENSMUST00000190659.2	732	2	513	0	-299	0	multi-exon	FALSE	canonical	3	12	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGAGTCAGCTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	59890336	59891510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59890498_59891452
ES_00002382	chr1	+	6062	1	ISM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	108156	1397	20079	-1397	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGTATTTTTGATTTCA	NA	False	NA	11	True	ATTAAA	-21	NA	59910714	59916776	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_59910700_59916800
ES_00002383	chr1	+	2102	14	FSM	ENSMUSG00000026017.14	ENSMUST00000027171.12	2102	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	2.43008753829713	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACTTAAAGCTCCAATAT	NA	False	NA	NA	False	NA	NA	NA	60147260	60189959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_60147360_60148485_60148609_60164009_60164071_60165078_60165194_60167147_60167233_60171002_60171193_60175422_60175544_60178358_60178503_60180493_60180728_60183152_60183316_60185267_60185332_60186526_60186640_60186991_60187362_60189739
ES_00002386	chr1	+	6706	10	NNC	ENSMUSG00000026782.16	novel	1671	10	NA	NA	-67	787	intron_retention	TRUE	canonical	3	27	junction_5	60.4060335470629	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTGTGTGTTCATA	NA	False	NA	6	True	AATACA	-17	NA	60448710	60521104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487239_60487362_60492762_60492922_60503687_60503775_60509824_60509999_60515898
ES_00002387	chr1	+	1806	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-14	-574	-14	574	mono-exon	FALSE	NA	NA	NA	NA	NA	750	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGTGCTTAGATGGCTA	NA	False	NA	125	True	NA	NA	NA	60743076	60744882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_60743100_60744900
ES_00002389	chr1	+	6699	17	FSM	ENSMUSG00000025969.16	ENSMUST00000063594.13	6342	17	-360	3	57	-3	multi-exon	FALSE	canonical	2	3	junction_2	4.64312327533956	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCCTACATTGTCTTTC	4065	False	NA	NA	False	AATAAA	-17	NA	62742500	62857851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62851692_62851744_62854491
ES_00002390	chr1	+	368	1	FSM	ENSMUSG00000081429.2	ENSMUST00000118179.2	246	1	-53	-69	-53	69	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGTGTGTATGCATA	9730	False	NA	NA	False	NA	NA	NA	63112879	63113247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63112900_63113200
ES_00002391	chr1	+	1253	1	FSM	ENSMUSG00000084799.8	ENSMUST00000186786.2	1236	1	-17	0	-17	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACAGCTGTTTATTTTT	NA	False	NA	NA	False	AGTAAA	-25	NA	63153237	63154490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63153200_63154500
ES_00002392	chr1	+	9682	1	FSM	ENSMUSG00000101599.2	ENSMUST00000185480.2	9720	1	-349	387	-349	-387	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGACCTCACACTTTCCC	NA	False	NA	NA	False	NA	NA	NA	63155927	63165609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63155900_63165600
ES_00002393	chr1	+	1107	6	NIC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	1301.44894636709	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216001	63218815	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_63216451_63216912_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
ES_00002396	chr1	+	802	6	FSM	ENSMUSG00000025967.17	ENSMUST00000027108.13	802	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1594.84562262308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAGTGCACTTAAATAAA	NA	False	NA	-4	True	TTTAAA	-10	NA	63216303	63218781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63216451_63216881_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
ES_00002397	chr1	+	795	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1304.21771188709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216303	63218815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_63216451_63216912_63217042_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ES_00002399	chr1	+	12735	6	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-42	0	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	128	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGTGTTTGTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	63239429	63353734	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
ES_00002400	chr1	+	3515	22	FSM	ENSMUSG00000025964.16	ENSMUST00000114101.8	3496	22	-19	0	0	0	multi-exon	TRUE	canonical	2	25	junction_12	9.21868358195068	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGAGTTCAGTGTTTT	NA	False	NA	NA	False	CATAAA	-18	NA	63485049	63608253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007
ES_00002406	chr1	+	295	1	FSM	ENSMUSG00000086721.3	ENSMUST00000117621.2	465	1	76	94	76	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCATGAACATTGTGGAAG	NA	False	NA	NA	False	NA	NA	NA	64189435	64189730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_64189400_64189700
ES_00002407	chr1	+	2923	10	FSM	ENSMUSG00000070871.11	ENSMUST00000094898.5	2923	10	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	18.3632752128592	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGGCGAGTGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	64730503	64764799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_64730560_64740127_64740203_64741504_64741540_64747536_64747638_64750576_64750613_64752269_64752322_64753727_64753848_64757289_64757457_64760785_64760949_64762681
ES_00002412	chr1	+	2691	6	NIC	ENSMUSG00000026005.16	novel	2713	7	NA	NA	4	90	combination_of_known_splicesites	FALSE	canonical	3	56	junction_1	305.506530208439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACATCAGCTAGAAATAC	NA	False	NA	95	True	NA	NA	NA	66740069	66759054	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_66740177_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ES_00002414	chr1	+	2816	14	FSM	ENSMUSG00000039354.17	ENSMUST00000136498.8	2818	14	2	0	2	0	multi-exon	FALSE	canonical	3	73	junction_6	8.69128652953414	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	72622411	72666075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621
ES_00002415	chr1	+	274	2	Intergenic	novelGene_84	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	69	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTCCAAAGGAAAGACAGG	NA	False	NA	NA	False	NA	NA	NA	72676135	72743730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_72676161_72743481
ES_00002417	chr1	+	437	3	FSM	ENSMUSG00000026179.15	ENSMUST00000138620.2	435	3	-9	7	0	-7	multi-exon	FALSE	canonical	3	54	junction_2	663.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCACCCCCGCGTGCGCC	NA	False	NA	NA	False	NA	NA	NA	74324203	74386718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74324297_74325000_74325170_74386543
ES_00002419	chr1	+	2124	14	NNC	ENSMUSG00000026177.12	novel	604	4	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.6190278859903	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCTTAAAGAG	6358	False	NA	NA	False	NA	NA	NA	74415748	74425211	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_74415821_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ES_00002420	chr1	+	623	5	FSM	ENSMUSG00000033276.19	ENSMUST00000113694.8	629	5	0	6	0	-6	multi-exon	FALSE	canonical	1	2	junction_4	1.08972473588517	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGATTTCTGAGCTTCCA	NA	False	NA	NA	False	ATTAAA	-15	NA	74640672	74644678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74640773_74641187_74641361_74642296_74642438_74642555_74642634_74644547
ES_00002421	chr1	+	669	7	FSM	ENSMUSG00000033257.15	ENSMUST00000141119.8	664	7	-5	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	54.1584609169139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAAAGTTGTACGGCCAG	NA	False	NA	NA	False	NA	NA	NA	74700903	74724516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74701049_74712002_74712170_74718056_74718091_74719512_74719623_74720458_74720569_74720917_74720982_74724477
ES_00002423	chr1	+	493	5	FSM	ENSMUSG00000033257.15	ENSMUST00000129890.8	493	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	60.3049541911774	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAGCGAGTCAGTGGCA	NA	False	NA	NA	False	NA	NA	NA	74700975	74720950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74701049_74712002_74712170_74719512_74719623_74720458_74720569_74720917
ES_00002425	chr1	+	1089	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2043	False	NA	11	True	AGTAAA	-17	NA	75145300	75148268	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ES_00002428	chr1	+	2864	8	FSM	ENSMUSG00000026201.13	ENSMUST00000191108.7	1500	8	0	-1364	0	0	multi-exon	FALSE	canonical	1	2	junction_5	77.7888297946198	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAAGTAGCGGTCTACT	NA	False	NA	NA	False	AATAAA	-13	NA	75187513	75192250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189756_75189873_75190219_75190342_75190457
ES_00002434	chr1	+	223	2	NNC	ENSMUSG00000026207.17	novel	346	3	NA	NA	-5	-1250	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTGCTTTCAAAGATCT	NA	False	NA	NA	False	NA	NA	NA	75360194	75367317	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_75360228_75367127
ES_00002435	chr1	+	1652	14	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-4	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	99.1913457763482	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412621	75419818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75412656_75412789_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ES_00002436	chr1	+	1781	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_1	75.8797934601535	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412625	75419817	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ES_00002437	chr1	+	1709	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	0	-2	intron_retention	FALSE	canonical	3	5	junction_6	101.94442930669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTGGACTCCTACTTGC	NA	False	NA	16	True	AATAAA	-20	NA	75412625	75419821	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417131_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ES_00002438	chr1	+	1521	13	NNC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	78.2403703694937	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412630	75419817	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_75412656_75413381_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ES_00002441	chr1	+	452	2	FSM	ENSMUSG00000006576.17	ENSMUST00000189794.2	568	2	116	0	116	0	multi-exon	FALSE	canonical	2	9	junction_1	0	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCATCCTGCCTCTCAT	1602	False	NA	NA	False	NA	NA	NA	75523415	75524178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75523566_75523876
ES_00002442	chr1	+	586	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	-11	1274	-11	-1274	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGGAACTCACTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	77491905	77492491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_77491900_77492500
ES_00002444	chr1	+	7393	3	FSM	ENSMUSG00000079470.9	ENSMUST00000053760.12	7393	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	87	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGCTTCATTCTTGTGC	NA	False	NA	12	True	AATAAA	-22	NA	78635754	78649229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_78635821_78640857_78640998_78642042
ES_00002447	chr1	+	1626	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGCAATGTCTATGGAA	NA	False	NA	8	True	AATAAA	-8	NA	82702654	82730106	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ES_00002449	chr1	+	2365	2	FSM	ENSMUSG00000026150.15	ENSMUST00000162573.3	2360	2	-5	0	-5	0	multi-exon	FALSE	canonical	3	528	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCACATATATTGTCTCA	1138	False	NA	-36	True	NA	NA	NA	82726104	82729449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_82728326_82729305
ES_00002450	chr1	+	223	1	FSM	ENSMUSG00002074851.1	ENSMUST00020182523.1	53	1	2	-172	2	172	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCGCCGCCGGCTCCCGG	NA	False	NA	NA	False	NA	NA	NA	82817168	82817391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_82817200_82817400
ES_00002451	chr1	+	2561	13	Fusion	ENSMUSG00000026159.14_ENSMUSG00002074851.1	novel	2352	13	NA	NA	14	-2	multi-exon	FALSE	canonical	3	110	junction_8	115.942843916973	87	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTGTTTTTGTGTTCT	NA	False	NA	13	True	AATAAA	-13	NA	82817180	82873394	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863834_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
ES_00002452	chr1	+	2896	13	FSM	ENSMUSG00000026159.14	ENSMUST00000063380.11	2896	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	129.211390106807	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTAGTAATGCCTCGTT	NA	False	NA	-88	True	AATGAA	-15	NA	82817391	82874000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860964_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
ES_00002454	chr1	+	369	2	FSM	ENSMUSG00000101173.2	ENSMUST00000186994.2	398	2	29	0	29	0	multi-exon	TRUE	canonical	0	0	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTTTGGAAAACAGTCC	NA	False	NA	NA	False	NA	NA	NA	83135733	83136738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_83135960_83136595
ES_00002455	chr1	+	548	1	FSM	ENSMUSG00000079140.4	ENSMUST00000159051.2	788	1	337	-97	337	97	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTGCTGTGCCTCCATC	NA	False	NA	NA	False	NA	NA	NA	83292570	83293118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_83292600_83293100
ES_00002457	chr1	+	902	4	FSM	ENSMUSG00000073633.10	ENSMUST00000139562.8	881	4	-21	0	-21	0	multi-exon	FALSE	canonical	3	8	junction_1	23.5843639350783	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	4223	False	NA	NA	False	AATAAA	-15	NA	84844135	84878208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_84844265_84858812_84858922_84874210_84874384_84877717
ES_00002458	chr1	+	204	2	Antisense	novelGene_ENSMUSG00000026220.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAGACCGAAGTAATTT	NA	False	NA	NA	False	NA	NA	NA	84857278	84897627	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_+_84857330_84897474
ES_00002459	chr1	+	201	2	Antisense	novelGene_ENSMUSG00000026220.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2480	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGCTTGCTGTGCAAAAA	NA	False	NA	NA	False	NA	NA	NA	84897418	84899962	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_+_84897475_84899817
ES_00002462	chr1	+	586	3	FSM	ENSMUSG00000026229.18	ENSMUST00000149946.2	586	3	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_1	63	1744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAGGAGGAGGA	1716	False	NA	48	True	NA	NA	NA	86055588	86060489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86056028_86058358_86058452_86060435
ES_00002465	chr1	+	2245	22	NIC	ENSMUSG00000062590.14	novel	2160	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_20	31.3575677015006	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	8	True	AATAAA	-13	NA	86082502	86180211	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86146569_86146621_86172287_86172393_86179998
ES_00002467	chr1	+	3106	1	FSM	ENSMUSG00000073627.8	ENSMUST00000190804.2	3185	1	-509	588	-495	-588	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCCCCCCACCCCCCA	NA	False	NA	NA	False	NA	NA	NA	86286800	86289906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86286800_86289900
ES_00002470	chr1	+	1261	6	Fusion	ENSMUSG00000026240.13_ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	48	multi-exon	FALSE	non_canonical	0	0	junction_5	8590.17096453848	2721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTCATAGATATTCCCA	NA	False	NA	NA	False	NA	NA	NA	86454447	86534748	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86458428_86534696
ES_00002471	chr1	+	2925	12	FSM	ENSMUSG00000026251.14	ENSMUST00000073252.9	2925	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.67628081041689	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTTGTGGTAATTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	87118358	87127792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87118465_87118696_87118852_87119241_87119287_87119935_87120046_87120207_87120364_87120567_87120678_87122521_87122723_87123206_87123319_87123404_87123520_87125004_87125210_87125296_87125416_87126301
ES_00002473	chr1	+	1601	5	FSM	ENSMUSG00000026255.16	ENSMUST00000118687.8	1726	5	125	0	125	0	multi-exon	FALSE	canonical	2	6	junction_4	2.58602010819715	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACCAGTGTGCCTTTTT	1533	False	NA	NA	False	AATAAA	-22	NA	87192209	87238558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382_87237569_87237693
ES_00002478	chr1	+	3127	18	FSM	ENSMUSG00000026289.16	ENSMUST00000027512.13	3130	18	0	3	0	0	multi-exon	FALSE	canonical	3	20	junction_7	58.4556141318301	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGCGTCTTGATTGTC	7245	False	NA	20	True	AATAAA	-29	NA	87683734	87720147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87702534_87702592_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
ES_00002480	chr1	+	241	1	FSM	ENSMUSG00000087968.3	ENSMUST00000157343.3	272	1	15	16	15	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAATCTGAGACCTCAG	2326	False	NA	NA	False	NA	NA	NA	87704674	87704915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87704700_87704900
ES_00002481	chr1	+	5563	29	NIC	ENSMUSG00000070738.11	novel	5695	30	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_28	64.6690554646801	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCATTCCTGTCCTCAT	4071	False	NA	20	True	AATAAA	-24	NA	87781009	87872212	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87870104
ES_00002482	chr1	+	5677	30	NNC	ENSMUSG00000070738.11	novel	5695	30	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_27	65.4014948539556	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCATTCCTGTCCTCAT	4076	False	NA	20	True	AATAAA	-24	NA	87781014	87872212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867910_87868029_87869090_87869222_87870104
ES_00002483	chr1	+	218	2	Genic_Genomic	ENSMUSG00000103996.2	novel	844	1	NA	NA	-12	36266	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGTACTTTTGAGACC	8228	False	NA	NA	False	NA	NA	NA	87792782	87829904	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_87792810_87829713
ES_00002484	chr1	+	1468	4	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-8	9685	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.657891697365	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGCTTCGAGTGACAATG	NA	False	NA	5	True	ATTAAA	-19	NA	88387396	88402965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_88387678_88397558_88397777_88398642_88398830_88402183
ES_00002485	chr1	+	3513	5	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	588	11780	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	9.24662100445346	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGTGTGTGTGCGT	NA	False	NA	NA	False	AATAAA	-14	NA	88387992	88405060	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_88388039_88390701_88390815_88393237_88393528_88398642_88398830_88402183
ES_00002486	chr1	+	341	2	NIC	ENSMUSG00000097398.3	novel	358	3	NA	NA	24	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682635	88683458	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_88682774_88683255
ES_00002487	chr1	+	2055	2	FSM	ENSMUSG00000092627.3	ENSMUST00000173856.2	1372	2	4	-687	4	687	multi-exon	FALSE	canonical	3	31	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGATTCTTTGAAGCTCTT	NA	False	NA	22	True	GATAAA	-29	NA	89857959	89860271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_89858176_89858432
ES_00002488	chr1	+	2266	1	FSM	ENSMUSG00000092627.3	ENSMUST00000189763.2	3030	1	0	764	0	664	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATCTTTATGAATTTAT	NA	False	NA	-1	True	GATAAA	-6	NA	89857982	89860248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_89858000_89860200
ES_00002490	chr1	+	1005	6	FSM	ENSMUSG00000034432.12	ENSMUST00000189309.7	1003	6	-2	0	0	0	multi-exon	FALSE	canonical	3	717	junction_5	21.0675105316219	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGTGAGGCGTTACGGCC	NA	False	NA	NA	False	NA	NA	NA	90531197	90539188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696
ES_00002492	chr1	+	1159	1	Intergenic	novelGene_107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTCCATAACTTGATAGT	NA	False	NA	NA	False	NA	NA	NA	90550946	90552105	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_90550900_90552100
ES_00002493	chr1	+	2050	13	FSM	ENSMUSG00000026305.16	ENSMUST00000068116.13	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	28.0697296428416	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGGGTTTTGTTT	NA	False	NA	NA	False	AATGAA	-9	NA	90926500	91056662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ES_00002494	chr1	+	1006	1	FSM	ENSMUSG00000083064.2	ENSMUST00000117121.2	892	1	31	-145	31	145	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATGTAAAGTGAGTTAGA	9230	False	NA	NA	False	NA	NA	NA	91223797	91224803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91223800_91224800
ES_00002496	chr1	+	2374	8	FSM	ENSMUSG00000034292.14	ENSMUST00000187588.2	2374	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	5.67486401886892	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGGACTGTCAAATTT	3092	False	NA	8	True	ATTAAA	-24	NA	91445983	91457029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
ES_00002500	chr1	+	634	6	FSM	ENSMUSG00000026275.14	ENSMUST00000127141.2	634	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	263.766108512826	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTCTTCTTGGTCAA	NA	False	NA	NA	False	NA	NA	NA	93271428	93280302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279047_93279359_93280238
ES_00002501	chr1	+	513	6	FSM	ENSMUSG00000026280.18	ENSMUST00000149436.8	513	6	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	135.105884401828	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCCAGGTCCTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	93679221	93703405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93679304_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349
ES_00002502	chr1	+	4196	12	FSM	ENSMUSG00000026280.18	ENSMUST00000135762.8	4186	12	-10	0	0	0	multi-exon	FALSE	canonical	3	280	junction_9	30.7520072582787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACATGAATTTCTG	NA	False	NA	14	True	ATTAAA	-20	NA	93682756	93715901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ES_00002507	chr1	+	392	1	FSM	ENSMUSG00000089791.2	ENSMUST00000160287.2	1395	1	918	85	918	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTCAATTACACCTACA	NA	False	NA	NA	False	NA	NA	NA	98386410	98386802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_98386400_98386800
ES_00002508	chr1	+	4327	29	FSM	ENSMUSG00000026319.14	ENSMUST00000186807.7	4338	29	11	0	11	0	multi-exon	FALSE	canonical	1	1	junction_6	37.2331834386961	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAGAATAATGCAGACT	NA	False	NA	NA	False	AATAAA	-28	NA	105591596	105681797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105668737_105668821_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ES_00002509	chr1	+	5375	29	NNC	ENSMUSG00000026319.14	novel	5414	29	NA	NA	11	-66	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_22	37.2937012518364	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGTGTATTTTGTTT	NA	False	NA	17	True	AATAAA	-17	NA	105591596	105682845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658934_105659006_105662242_105662350_105663647_105663748_105668737_105668821_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ES_00002512	chr1	+	495	3	FSM	ENSMUSG00000026321.9	ENSMUST00000187658.2	611	3	0	116	0	-116	multi-exon	FALSE	canonical	3	7	junction_2	1.5	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTTTAGACCTGACCT	NA	False	NA	NA	False	NA	NA	NA	105747594	105753010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_105747690_105749202_105749317_105752724
ES_00002513	chr1	+	5655	12	NIC	ENSMUSG00000038866.16	novel	5796	14	NA	NA	636	0	intron_retention	FALSE	canonical	1	4	junction_6	21.5467970429463	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATGCCTTATTGCAAG	NA	False	NA	16	True	AATAAA	-20	NA	105919054	105961804	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955132_105955262_105957481
ES_00002515	chr1	+	1370	1	FSM	ENSMUSG00000100025.2	ENSMUST00000190856.2	1723	1	122	231	122	-231	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGGGTAATGAGTAAGGA	NA	False	NA	NA	False	AAAACA	-19	NA	109760875	109762245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_109760900_109762200
ES_00002518	chr1	+	457	1	FSM	ENSMUSG00000091876.2	ENSMUST00000168653.2	318	1	-94	-45	-94	45	mono-exon	FALSE	NA	NA	NA	NA	NA	1537	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATGAGAAAGAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	119715404	119715861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_119715400_119715900
ES_00002519	chr1	+	653	4	FSM	ENSMUSG00000026388.16	ENSMUST00000128578.2	806	4	126	27	126	-27	multi-exon	FALSE	canonical	0	0	junction_3	25.0377492776186	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACACATATTCATAAAAT	NA	False	NA	NA	False	NA	NA	NA	120088335	120101269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_120088387_120093864_120093903_120099130_120099213_120100787
ES_00002521	chr1	+	627	5	FSM	ENSMUSG00000026342.11	ENSMUST00000190037.7	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	39.4239774756429	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGTGCACAACAGATACAAG	NA	False	NA	NA	False	NA	NA	NA	125488331	125496310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_125488555_125490011_125490103_125490236_125490379_125494204_125494349_125496283
ES_00002524	chr1	+	4657	10	NNC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	38	-1	intron_retention	FALSE	canonical	3	45	junction_6	179.561193530847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGATTGTGTGAACTAT	NA	False	NA	26	True	ATTAAA	-20	NA	127701938	127733668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725369_127725457_127725577_127725624_127727126_127727291_127729342_127729414_127729898
ES_00002525	chr1	+	2447	12	FSM	ENSMUSG00000056211.14	ENSMUST00000191016.7	2438	12	-9	0	-9	0	multi-exon	FALSE	canonical	3	198	junction_9	26.662258588834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGAGAGTGCAAGAGTC	NA	False	NA	NA	False	AATAAA	-16	NA	128031028	128110868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722
ES_00002528	chr1	+	4505	25	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_8	83.6494732499853	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-15	NA	128079599	128165473	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_128079690_128080925_128081137_128090505_128090596_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128104560_128104694_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00002530	chr1	+	3967	13	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	139	-3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	107.607407582688	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCCTGCATTTTGCTCTT	233	False	NA	NA	False	NA	NA	NA	128172037	128207112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202542_128202742_128204693
ES_00002531	chr1	+	2911	4	FSM	ENSMUSG00000042510.8	ENSMUST00000039323.8	2909	4	-2	0	-2	0	multi-exon	FALSE	canonical	1	1	junction_2	1.63299316185545	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCCCTGTTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	130659710	130672359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_130659961_130665238_130665425_130668739_130668921_130670065
ES_00002532	chr1	+	739	3	FSM	ENSMUSG00000026427.17	ENSMUST00000153651.2	739	3	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_1	25.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTTTTGCTTGCATGT	NA	False	NA	25	True	ATTAAA	-18	NA	131094115	131099247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131094160_131095856_131095978_131098673
ES_00002533	chr1	+	527	4	FSM	ENSMUSG00000013275.10	ENSMUST00000146360.2	553	4	26	0	26	0	multi-exon	FALSE	canonical	3	151	junction_1	6.59966329107444	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATACTTGACTGCTTTGG	9043	False	NA	NA	False	NA	NA	NA	131770603	131774367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131770767_131771656_131771792_131772075_131772225_131774287
ES_00002536	chr1	+	2815	12	FSM	ENSMUSG00000026447.18	ENSMUST00000124934.8	2817	12	2	0	2	0	multi-exon	FALSE	canonical	2	8	junction_4	3.14130046239473	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGGGTCATGTAAATA	NA	False	NA	NA	False	CATAAA	-15	NA	132973751	133009075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132974162_132993949_132994968_132998055_132998157_132998911_132999067_132999339_132999461_133002248_133002361_133002516_133002597_133003548_133003613_133005063_133005211_133005956_133005991_133007381_133007578_133008698
ES_00002537	chr1	+	3688	2	FSM	ENSMUSG00000046062.6	ENSMUST00000122956.2	3688	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5768	False	NA	15	True	AATAAA	-20	NA	133059081	133067521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_133059649_133064400
ES_00002538	chr1	+	5402	22	NNC	ENSMUSG00000041757.18	novel	4820	22	NA	NA	23363	152	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_9	5.61864405330436	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGATCCAAAGAAGGGGAG	193	False	NA	NA	False	NA	NA	NA	133132421	133229507	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_133132520_133186746_133186828_133187779_133187895_133191534_133191640_133192398_133192472_133194303_133194405_133197737_133197941_133199946_133200430_133201595_133202113_133209520_133209602_133209854_133210005_133211008_133211105_133212617_133212730_133212984_133213125_133215207_133215338_133215511_133215619_133220089_133220267_133221443_133221612_133221691_133221826_133222300_133222447_133226657_133226782_133227446
ES_00002539	chr1	+	524	5	FSM	ENSMUSG00000041757.18	ENSMUST00000189598.2	524	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	5.80409338312195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTCTCGGGGCACTGAC	NA	False	NA	NA	False	NA	NA	NA	133201991	133212693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_133202113_133209520_133209602_133209854_133210005_133211008_133211105_133212617
ES_00002540	chr1	+	568	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5621	False	NA	4	True	AATAAA	-16	NA	133251716	133257460	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_133251787_133254947_133255079_133257093
ES_00002547	chr1	+	578	2	NNC	ENSMUSG00000042229.10	novel	2861	2	NA	NA	6496	-2199	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTACTCTACCAGTGTAG	746	False	NA	NA	False	NA	NA	NA	134428881	134434313	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_134428960_134433813
ES_00002549	chr1	+	1107	1	FSM	ENSMUSG00000042207.18	ENSMUST00000191572.2	4402	1	-18	3313	-18	-1213	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGGCCTCTTTATAA	9665	False	NA	NA	False	TTTAAA	-42	NA	134550519	134551626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134550500_134551600
ES_00002550	chr1	+	930	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_1	233.142779333943	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890311	134901900	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ES_00002553	chr1	+	1191	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5359	2	135	-2	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGGTTTCTGTAGCCCT	3706	False	NA	41	True	ATTAAA	-22	NA	135732929	135738725	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ES_00002554	chr1	+	1830	1	FSM	ENSMUSG00000026414.14	ENSMUST00000191055.2	3330	1	2693	-1193	-1616	1193	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATCGAGAGCATCTT	571	False	NA	NA	False	NA	NA	NA	135766820	135768650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_135766800_135768600
ES_00002555	chr1	+	9011	34	NIC	ENSMUSG00000041642.19	novel	9115	35	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_27	14.2043333317495	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTGTGGCTAGTGGGTT	6239	False	NA	3	True	AATAAA	-13	NA	136059191	136105736	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ES_00002556	chr1	+	1987	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	48	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	23.4004985701872	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGTTATTTATTTCAGTC	NA	False	NA	8	True	AATAAA	-14	NA	136343056	136367894	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136367490
ES_00002557	chr1	+	7508	31	NNC	ENSMUSG00000041498.14	novel	8770	30	NA	NA	30	-1746	intron_retention	TRUE	canonical	0	0	junction_30	15.9389111575694	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATCCAGGTGCTGTCACT	NA	False	NA	NA	False	NA	NA	NA	136394110	136457503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_136394385_136395585_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047_136431178_136437882_136437984_136441471_136441561_136443591_136443817_136443997_136444180_136447366_136447523_136448927_136449048_136453519_136453595_136454512_136454646_136454983_136456674_136456723
ES_00002559	chr1	+	8401	4	NNC	ENSMUSG00000041483.15	novel	4937	2	NA	NA	-58200	3050	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	25.6645020732269	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGTGAACTTGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	136494438	136560841	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_136494541_136551065_136551108_136552368_136552790_136553005
ES_00002561	chr1	+	215	1	Intergenic	novelGene_154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGGATAATGAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	136591996	136592211	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136592000_136592200
ES_00002562	chr1	+	207	1	Intergenic	novelGene_156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATAAATAGGGCTGGAGA	2151	False	NA	NA	False	NA	NA	NA	136629961	136630168	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136630000_136630200
ES_00002563	chr1	+	676	1	FSM	ENSMUSG00000103953.2	ENSMUST00000193396.2	477	1	54	-253	54	253	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTAGAATGTGGTTCTTC	NA	False	NA	NA	False	AATAAA	-3	NA	136720825	136721501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_136720800_136721500
ES_00002564	chr1	+	8238	21	NIC	ENSMUSG00000056268.16	novel	8206	22	NA	NA	121	-11	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	17.482777239329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACGATCAAACATTGTGTG	NA	False	NA	0	True	AATAAA	-6	NA	138891293	139103770	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_138891624_138893903_138893969_138950842_138950887_138981083_138981154_138982278_138982360_138986804_138986865_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
ES_00002565	chr1	+	1689	19	NNC	ENSMUSG00000056268.16	novel	8206	22	NA	NA	-3	5244	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_18	18.878428476131	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTGTATGTATGGGAAGT	NA	False	NA	NA	False	AATAAA	-18	NA	138891462	139069297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138986804_138986865_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139069102
ES_00002566	chr1	+	328	1	FSM	ENSMUSG00000104436.2	ENSMUST00000194246.2	3342	1	612	2402	612	-2402	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGACTAGCCGAAGTATT	NA	False	NA	NA	False	NA	NA	NA	138896859	138897187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_138896900_138897200
ES_00002567	chr1	+	3614	11	NNC	ENSMUSG00000033964.13	novel	8361	11	NA	NA	3	-1094	intron_retention	FALSE	canonical	2	5	junction_1	15.9762323468332	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAAGTTGAGTTTAGAA	NA	False	NA	NA	False	ATTAAA	-15	NA	139350122	139375827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_139350334_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
ES_00002569	chr1	+	1677	12	NIC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	-195	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	455.061706831934	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143652814	143682679	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
ES_00002572	chr1	+	3200	11	FSM	ENSMUSG00000006005.19	ENSMUST00000152967.8	3200	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_3	68.065042422671	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTATCACTGTTTTCT	NA	False	NA	17	True	AATAAA	-16	NA	150314682	150325678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150324990_150325482
ES_00002574	chr1	+	6828	15	NNC	ENSMUSG00000026483.14	novel	6531	14	NA	NA	-287	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.6363416244727	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGTTGCTCATTTATC	NA	False	NA	11	True	AATAAA	-19	NA	151446649	151597690	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_151447015_151447191_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
ES_00002576	chr1	+	4078	5	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	98.9709553353912	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGTCTTTGTCCAGA	NA	False	NA	18	True	AATAAA	-19	NA	152969225	152995012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_152969358_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ES_00002577	chr1	+	380	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	324	-133	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969549	152970210	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_152969599_152969782_152969860_152969956
ES_00002579	chr1	+	243	1	Intergenic	novelGene_173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTTTTTTATTAGATA	9016	False	NA	NA	False	AATAAA	-11	NA	156222165	156222408	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_156222200_156222400
ES_00002581	chr1	+	1958	12	NNC	ENSMUSG00000033488.12	novel	1618	10	NA	NA	-6024	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	18.8745313553555	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157280122	157316630	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_157280140_157283287_157283418_157285956_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
ES_00002586	chr1	+	2169	1	FSM	ENSMUSG00000103006.2	ENSMUST00000193962.2	1874	1	-296	1	-296	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TACAATAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	160040216	160042385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160040200_160042400
ES_00002588	chr1	+	762	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	-3	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862732	160866104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00002589	chr1	+	502	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_7	1656.43137771865	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862732	160866107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00002590	chr1	+	808	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	-15	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862732	160866109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ES_00002591	chr1	+	549	3	FSM	ENSMUSG00000053332.14	ENSMUST00000160551.2	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	5177	junction_1	196	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	18	True	ATTAAA	-14	NA	160864922	160866105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160865118_160865564_160865608_160865794
ES_00002592	chr1	+	636	2	FSM	ENSMUSG00000053332.14	ENSMUST00000159037.2	636	2	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160865287	160866107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160865843_160866026
ES_00002593	chr1	+	2511	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192850.6	1914	6	-200	-397	-21	1	multi-exon	FALSE	canonical	2	3	junction_3	49.9095181303126	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGCTGGTCTTGTCTTTG	NA	False	NA	9	True	NA	NA	NA	160898261	160914291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160907437_160907581_160910477_160911021_160913557
ES_00002594	chr1	+	3284	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	6	0	4	0	multi-exon	FALSE	canonical	3	13	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AAAAAG	-8	NA	161796760	161801004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_161796849_161797808
ES_00002596	chr1	+	4012	21	FSM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_19	53.7530231707948	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163607151	163744678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163739640_163739707_163743293
ES_00002597	chr1	+	2468	14	NIC	ENSMUSG00000026584.15	novel	4336	14	NA	NA	268	-354	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	25.1002722821696	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTCAGGAAGAATTCTC	NA	False	NA	NA	False	AATGAA	-1	NA	163757641	163781017	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768589_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
ES_00002598	chr1	+	334	1	ISM	ENSMUSG00000026584.15	ENSMUST00000162920.2	1825	2	295	1961	295	-1961	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAACTTTTGCTAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	163779076	163779410	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_163779100_163779400
ES_00002600	chr1	+	1984	1	FSM	ENSMUSG00000026568.7	ENSMUST00000195026.2	4015	1	138	1893	138	-1893	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTGGTTATTAAATCTG	NA	False	NA	NA	False	NA	NA	NA	165288343	165290327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_165288300_165290300
ES_00002601	chr1	+	787	4	FSM	ENSMUSG00000000544.15	ENSMUST00000027847.7	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	86.0736119067085	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTTCTTTCTCGGTG	NA	False	NA	NA	False	AATAAA	-20	NA	165957985	165981705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165981478
ES_00002603	chr1	+	667	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3265	1	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	60.9631035955356	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGCCTCTTGTGTCTTT	NA	False	NA	12	True	AATAAA	-18	NA	171049357	171053943	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_171049548_171050883_171050916_171052855_171052936_171053234_171053368_171053711
ES_00002605	chr1	+	2106	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	14	True	AATAAA	-14	NA	171097895	171104467	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ES_00002606	chr1	+	1632	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1640	False	NA	18	True	NA	NA	NA	171157160	171169250	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ES_00002609	chr1	+	657	7	FSM	ENSMUSG00000026553.18	ENSMUST00000152403.2	657	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	393.935450155084	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGACGCAGACTCCCAGA	7815	False	NA	NA	False	NA	NA	NA	171927302	171933730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171931978_171932120_171932752_171932820_171933683
ES_00002613	chr1	+	688	5	FSM	ENSMUSG00000026546.17	ENSMUST00000162988.8	638	5	-50	0	-5	0	multi-exon	FALSE	canonical	1	1	junction_1	14.8555545167456	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGAGGAGGTGGCCAG	5509	False	NA	NA	False	NA	NA	NA	172348697	172360169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172348900_172355356_172355483_172357376_172357520_172359647_172359793_172360097
ES_00002615	chr1	+	4048	9	ISM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	16	128483	16	-237	5prime_fragment	TRUE	canonical	2	3	junction_6	2.38484800354236	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACGCCAAGTCTCTCGA	NA	False	NA	NA	False	NA	NA	NA	174329406	174521812	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_174331158_174364610_174364778_174409481_174409630_174420626_174420683_174435947_174437519_174440072_174440218_174474671_174474760_174494208_174494271_174521752
ES_00002616	chr1	+	2335	9	ISM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	192614	4	-19887	-4	3prime_fragment	FALSE	canonical	1	3	junction_7	4.09076704298839	469	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTCTGTGTCAGCTGT	NA	False	NA	3	True	AATAAA	-12	NA	174522004	174650291	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_174522128_174523151_174523299_174526334_174526395_174527121_174527243_174547410_174547504_174571820_174571873_174618823_174618974_174647519_174647602_174648784
ES_00002617	chr1	+	1614	5	ISM	ENSMUSG00000026523.15	ENSMUST00000194087.6	3225	27	65153	38756	-3098	32724	internal_fragment	FALSE	canonical	2	15	junction_2	2.91547594742265	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCCAGATTTTTTTTCA	NA	False	NA	NA	False	ATTAAA	-39	NA	175591505	175604176	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_175591635_175594571_175594721_175597071_175597196_175599738_175599915_175603140
ES_00002618	chr1	+	3040	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	119.347460494686	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTGGGAAGTTTAAATG	9553	False	NA	5	True	AATAAA	-13	NA	175708146	175736298	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727201_175728446_175729020_175731901_175732004_175733361_175733556_175735995
ES_00002620	chr1	+	1325	8	FSM	ENSMUSG00000026504.18	ENSMUST00000150429.8	1398	8	73	0	73	0	multi-exon	FALSE	canonical	2	6	junction_6	3.91751691451488	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCTCTGTAGCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	176642298	176673063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746
ES_00002621	chr1	+	248	1	FSM	ENSMUSG00000103367.2	ENSMUST00000194617.2	339	1	246	-155	246	155	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCGCATAACCTTGAG	NA	False	NA	NA	False	NA	NA	NA	176663535	176663783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_176663500_176663800
ES_00002623	chr1	+	868	1	FSM	ENSMUSG00000089657.2	ENSMUST00000161442.2	610	1	-217	-41	-217	41	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TATATGACAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	177614204	177615072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_177614200_177615100
ES_00002624	chr1	+	333	1	Genic_Genomic	ENSMUSG00000102493.2	novel	NA	NA	NA	NA	828	189	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTGCTTGCTCTATTG	NA	False	NA	NA	False	NA	NA	NA	177971694	177972027	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_177971700_177972000
ES_00002627	chr1	+	9740	37	NNC	ENSMUSG00000026490.19	novel	9161	37	NA	NA	-526	2	at_least_one_novel_splicesite	FALSE	non_canonical	3	14	junction_36	16.7878005382951	1351	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGTATTCTATTTCTTC	NA	False	NA	4	True	AATAAA	-17	NA	179787510	179993170	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_179788853_179826926_179827019_179859069_179859154_179864393_179864490_179867616_179867766_179889354_179889449_179892530_179892732_179894715_179894965_179896861_179896942_179899909_179900077_179902134_179902258_179911936_179912071_179921508_179921752_179921945_179922057_179928589_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599_179990948_179990970
ES_00002628	chr1	+	6120	8	FSM	ENSMUSG00000038855.11	ENSMUST00000070181.7	6235	8	112	3	112	-3	multi-exon	FALSE	canonical	1	1	junction_4	2.77010277566647	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTAGCTTGATGTGATCC	NA	False	NA	NA	False	AATAAA	-14	NA	180158161	180252364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180158345_180159676_180161796_180240238_180240339_180241351_180241566_180245718_180245924_180247822_180247925_180248839_180248912_180249239
ES_00002630	chr1	+	2717	5	FSM	ENSMUSG00000026520.9	ENSMUST00000194253.2	2717	5	0	0	0	0	multi-exon	FALSE	canonical	3	1107	junction_1	27.6450718935582	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTAGTCTCACTGTGTA	46	False	NA	31	True	NA	NA	NA	180731887	180735652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180732096_180732308_180733950_180734159_180734253_180734354_180734519_180735041
ES_00002632	chr1	+	503	4	FSM	ENSMUSG00000026519.17	ENSMUST00000161847.8	488	4	-15	0	-15	0	multi-exon	TRUE	canonical	1	4	junction_1	12.8322510366134	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAGACTTTGAAAACGAG	NA	False	NA	NA	False	NA	NA	NA	180769893	180779737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_180770076_180774130_180774331_180776377_180776458_180779696
ES_00002635	chr1	+	1867	1	FSM	ENSMUSG00000103260.2	ENSMUST00000192106.2	1847	1	24	-44	24	44	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGCTGGAAGCAGAGTCAAG	NA	False	NA	NA	False	AATGAA	-5	NA	181109634	181111501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_181109600_181111500
ES_00002636	chr1	+	204	2	Intergenic	novelGene_222	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAGCGAGTTTTAAGGTT	NA	False	NA	NA	False	NA	NA	NA	181588028	181636259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_181588057_181636083
ES_00002637	chr1	+	1179	1	FSM	ENSMUSG00000026511.8	ENSMUST00000193005.2	1107	1	42	-114	42	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTCTTGCCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	181958305	181959484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_181958300_181959500
ES_00002638	chr1	+	201	1	Intergenic	novelGene_225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCACTTTTTCAATAG	NA	False	NA	NA	False	NA	NA	NA	182163058	182163259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_182163100_182163300
ES_00002640	chr1	+	626	2	FSM	ENSMUSG00000042901.11	ENSMUST00000195268.2	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTTTTCTATTAATT	NA	False	NA	NA	False	NA	NA	NA	183102967	183103680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_183103257_183103343
ES_00002642	chr1	+	2306	10	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	5	-6	combination_of_known_splicesites	FALSE	canonical	3	6	junction_7	23.4020153189347	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATTTTTAGTAGTATT	NA	False	NA	10	True	AATAAA	-21	NA	183170329	183191014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187725_183187850_183189427_183189583_183190053
ES_00002643	chr1	+	1475	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	15	-826	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183170339	183190194	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ES_00002644	chr1	+	203	1	Genic_Genomic	ENSMUSG00000104022.2	novel	NA	NA	NA	NA	1354	21	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATACCATTTTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	183202939	183203142	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_183202900_183203100
ES_00002647	chr1	+	2121	10	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	86.6005445767384	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064403	185089974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674_185089200_185089220
ES_00002648	chr1	+	780	2	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	23533	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185087936	185089974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_185088045_185089302
ES_00002649	chr1	+	3727	1	FSM	ENSMUSG00000026615.15	ENSMUST00000192049.2	3882	1	7	148	7	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGCCCAGGGGATGGAAG	NA	False	NA	NA	False	NA	NA	NA	185131861	185135588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185131900_185135600
ES_00002650	chr1	+	3429	3	FSM	ENSMUSG00000026614.8	ENSMUST00000238198.2	3506	3	77	0	77	0	multi-exon	FALSE	canonical	3	7	junction_1	2	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTATTGAGAGAAGAAAGT	NA	False	NA	NA	False	AATAAA	-30	NA	185187121	185197957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185188627_185194883_185195124_185196273
ES_00002651	chr1	+	5308	6	FSM	ENSMUSG00000104394.3_ENSMUSG00000039210.17	ENSMUST00000097443.10	2411	6	-10	-2887	-10	-1639	multi-exon	FALSE	canonical	2	13	junction_5	28.9924128005932	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	186947694	186970915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966828
ES_00002654	chr1	+	2036	2	FSM	ENSMUSG00000026604.18	ENSMUST00000195038.2	3810	2	1291	483	1291	4	multi-exon	FALSE	canonical	3	30	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTGGATTGTAGTTGC	NA	False	NA	6	True	AATAAA	-19	NA	189578530	189584177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_189578610_189582220
ES_00002655	chr1	+	3091	1	FSM	ENSMUSG00000104435.2	ENSMUST00000193794.2	4718	1	2174	-547	2174	547	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTACTCCTCCCCTCTCC	NA	False	NA	NA	False	NA	NA	NA	189614305	189617396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_189614300_189617400
ES_00002656	chr1	+	3368	9	NNC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	11	-462	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	58.9888760699846	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCATTTATTCCAGTTGT	NA	False	NA	20	True	AATAAA	-20	NA	190661060	190678697	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_190661444_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ES_00002658	chr1	+	2636	3	ISM	ENSMUSG00000026634.17	ENSMUST00000144693.2	3343	8	13593	0	5187	0	3prime_fragment	FALSE	canonical	3	208	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190674635	190679159	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_190675085_190675973_190676138_190677136
ES_00002659	chr1	+	837	1	FSM	ENSMUSG00000097845.3	ENSMUST00000181050.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGAAGCAGAGCTCAC	NA	False	NA	NA	False	NA	NA	NA	190757546	190758383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_190757500_190758400
ES_00002662	chr1	+	3084	19	FSM	ENSMUSG00000037461.11	ENSMUST00000194877.6	3069	19	-15	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	68.875894831856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATAACCTGGCTCTCA	8284	False	NA	NA	False	NA	NA	NA	191307838	191353758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_191308064_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
ES_00002664	chr1	+	4002	18	FSM	ENSMUSG00000037461.11	ENSMUST00000194785.2	4002	18	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	67.3081022079613	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGGTTTTTGTTTTTT	8319	False	NA	98	True	TTTAAA	-3	NA	191307873	191354858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_191308064_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
ES_00002666	chr1	+	2044	6	FSM	ENSMUSG00000026622.16	ENSMUST00000126446.8	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_5	34.4360276454762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTATATGCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	191553621	191560404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261
ES_00002667	chr1	+	1181	1	FSM	ENSMUSG00000049353.18	ENSMUST00000192547.2	2223	1	1042	0	1042	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTACTGCATATAGTCT	NA	False	NA	NA	False	AATAAA	-21	NA	191717172	191718353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_191717200_191718400
ES_00002672	chr1	-	3097	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	12090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	884.264304379635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAGAACAACCCTTCTT	1667	False	NA	NA	False	NA	NA	NA	4855915	4831338	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_4831371_4844524_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00002673	chr1	-	812	6	NNC	ENSMUSG00000033845.14	novel	1894	5	NA	NA	0	12090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1066.39306074261	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAGAACAACCCTTCTT	1667	False	NA	NA	False	NA	NA	NA	4855915	4831338	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_4831371_4844524_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00002675	chr1	-	4486	1	FSM	ENSMUSG00000033845.14	ENSMUST00000192286.2	4600	1	461	-347	461	347	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGAGATGGCTCAGTGG	3254	False	NA	NA	False	NA	NA	NA	4854328	4849842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_4849800_4854300
ES_00002676	chr1	-	603	1	FSM	ENSMUSG00000062588.5	ENSMUST00000078030.5	603	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTCTCCTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	4950874	4950271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_4950300_4950900
ES_00002677	chr1	-	4471	1	FSM	ENSMUSG00000090031.3	ENSMUST00000191825.2	5428	1	808	149	105	-149	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTACCTCCAGCAATCAAA	NA	False	NA	NA	False	NA	NA	NA	6284709	6280238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_6280200_6284700
ES_00002678	chr1	-	373	3	FSM	ENSMUSG00000097797.7	ENSMUST00000193106.6	256	3	-124	7	-50	-5	multi-exon	FALSE	canonical	3	4	junction_1	3	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAAGTTGTTTGGGTCA	NA	False	NA	NA	False	NA	NA	NA	7468143	7446116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_7446232_7452250_7452307_7467941
ES_00002679	chr1	-	240	1	FSM	ENSMUSG00000084353.2	ENSMUST00000119877.2	240	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCAGCTGGGATCATCTA	NA	False	NA	NA	False	NA	NA	NA	8862386	8862146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_8862100_8862400
ES_00002680	chr1	-	450	1	FSM	ENSMUSG00000066693.3	ENSMUST00000085919.3	626	1	148	28	148	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAAAGGTTCCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	9033697	9033247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_9033200_9033700
ES_00002682	chr1	-	1378	3	NNC	ENSMUSG00000099032.3	novel	4193	2	NA	NA	24	-2577	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	5.5	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTAGAAATGTTTTGGT	4	True	NA	NA	False	NA	NA	NA	10038133	10032972	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_10033747_10037323_10037743_10037948
ES_00002685	chr1	-	3722	1	Intergenic	novelGene_16	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTAGCTCCGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	11693406	11689684	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_11689700_11693400
ES_00002686	chr1	-	4816	7	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	-999	0	-999	0	intron_retention	FALSE	canonical	3	343	junction_5	37.0135110466435	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACACTTATGCTAC	NA	False	NA	-58	True	AATAAA	-10	NA	13198386	13183680	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
ES_00002689	chr1	-	3012	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	31201	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	5017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGTAGGAAGCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	13730770	13662352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_13662385_13695067_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ES_00002692	chr1	-	2502	1	FSM	ENSMUSG00000102982.2	ENSMUST00000194537.2	1266	1	-18	-1218	-18	1218	mono-exon	FALSE	NA	NA	NA	NA	NA	2057	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13712990	13710488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_13710500_13713000
ES_00002693	chr1	-	4188	18	FSM	ENSMUSG00000025932.15	ENSMUST00000168081.9	4366	18	184	-6	0	2	multi-exon	FALSE	canonical	3	15	junction_12	12.3526610612498	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTGGATGTCAGTATC	NA	False	NA	-9	True	AATAAA	-23	NA	14380275	14239175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341052_14344288_14344435_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ES_00002694	chr1	-	4500	18	NIC	ENSMUSG00000025932.15	novel	4366	18	NA	NA	-131	2	combination_of_known_junctions	FALSE	canonical	3	15	junction_12	10.8439704675792	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTGGATGTCAGTATC	NA	False	NA	-9	True	AATAAA	-23	NA	14380590	14239175	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341052_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ES_00002695	chr1	-	3977	11	ISM	ENSMUSG00000025920.20	ENSMUST00000162435.8	2735	13	67	114439	22	152	5prime_fragment	FALSE	canonical	1	4	junction_10	29.4591242232352	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTAACAAAACTGATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	16590269	16413478	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16590224
ES_00002696	chr1	-	1061	2	ISM	ENSMUSG00000025939.20	ENSMUST00000182554.9	1508	7	75305	-2	41391	2	3prime_fragment	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGTCTGTTCTTAAATT	5210	False	NA	NA	False	AATAAA	-19	NA	16614231	16611011	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_16612014_16614172
ES_00002704	chr1	-	6039	21	NIC	ENSMUSG00000026153.16	novel	5536	21	NA	NA	13	5	combination_of_known_splicesites	FALSE	canonical	3	10	junction_8	13.6318560731839	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAATGCTTGCTTACTC	NA	False	NA	0	True	AATAAA	-36	NA	24139401	24050168	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24139141
ES_00002705	chr1	-	6283	23	NIC	ENSMUSG00000026153.16	novel	4976	22	NA	NA	13	5	combination_of_known_junctions	FALSE	canonical	3	9	junction_21	15.3859439985746	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAATGCTTGCTTACTC	NA	False	NA	0	True	AATAAA	-36	NA	24139401	24050168	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24137711_24137801_24139141
ES_00002706	chr1	-	1585	1	FSM	ENSMUSG00000100131.2	ENSMUST00000187714.2	876	1	-709	0	-709	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAGAAAGTAGCCAAGGAG	NA	False	NA	NA	False	TTTAAA	-29	NA	24652200	24650615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_24650600_24652200
ES_00002707	chr1	-	1198	1	FSM	ENSMUSG00000081557.3	ENSMUST00000122295.3	2482	1	1296	-12	1296	12	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACATTGCAGCTTCTGTG	NA	False	NA	NA	False	AAGAAA	-26	NA	28840506	28839308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_28839300_28840500
ES_00002708	chr1	-	7715	15	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	6	3	combination_of_known_junctions	FALSE	canonical	3	35	junction_13	37.2287468475201	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATTTTTGGCAGTTAA	NA	False	NA	2	True	AATAAA	-22	NA	30912969	30841416	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30902067_30902337_30912658
ES_00002711	chr1	-	2865	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-301	27092	12	0	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGAATGGCTATTTTTC	NA	False	NA	-12	True	AATAAA	-13	NA	30912963	30868511	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
ES_00002712	chr1	-	2787	4	NNC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	-385	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	55.934485486743	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGAATGGCTATTTTTC	NA	False	NA	-12	True	AATAAA	-13	NA	30913387	30868511	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_30870641_30876185_30876348_30902067_30902337_30913160
ES_00002714	chr1	-	205	1	Intergenic	novelGene_30	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACATCTTAATCAGAAT	746	False	NA	NA	False	NA	NA	NA	33757222	33757017	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_33757000_33757200
ES_00002716	chr1	-	801	8	FSM	ENSMUSG00000042197.14	ENSMUST00000194656.6	801	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	111.188018734952	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGAACGGCCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	33853507	33818269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33844419_33844501_33852807_33852892_33853418
ES_00002717	chr1	-	973	7	NNC	ENSMUSG00000042197.14	novel	542	2	NA	NA	2	-273	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	116.134500568187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTGCTGTGGCTCATT	NA	False	NA	NA	False	AATAAA	-18	NA	33853606	33821531	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_33821763_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
ES_00002719	chr1	-	545	1	Intergenic	novelGene_33	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATTACACAAAATTAGGAT	NA	False	NA	NA	False	NA	NA	NA	34147091	34146546	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_34146500_34147100
ES_00002720	chr1	-	425	1	FSM	ENSMUSG00000102434.2	ENSMUST00000195698.2	1372	1	-8	955	-8	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGAGTAGATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	36070107	36069682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36069700_36070100
ES_00002721	chr1	-	543	1	FSM	ENSMUSG00000037470.15	ENSMUST00000192159.2	1082	1	401	138	-14	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAACGAGTTGGCGTTTT	NA	False	NA	NA	False	NA	NA	NA	36283400	36282857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36282900_36283400
ES_00002722	chr1	-	4593	21	NIC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	24	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_19	42.6348155853875	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	-7	True	AATAAA	-21	NA	36408212	36374810	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404714_36406849_36407116_36408185
ES_00002723	chr1	-	4641	21	NIC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_19	36.1657296345587	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	-7	True	AATAAA	-21	NA	36408221	36374810	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406830_36407116_36408185
ES_00002726	chr1	-	6687	42	NNC	ENSMUSG00000026116.12	novel	6698	42	NA	NA	-120	21800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.4585423882786	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATAGGGGAAGCTGGACG	7101	False	NA	NA	False	NA	NA	NA	36978728	36809471	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36809505_36831283_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ES_00002727	chr1	-	6688	42	NNC	ENSMUSG00000026116.12	novel	6698	42	NA	NA	-116	21801	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	68.0567265226967	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGGGGAAGCTGGACGG	7105	False	NA	NA	False	NA	NA	NA	36978724	36809470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36809504_36831275_36832287_36833124_36833277_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ES_00002728	chr1	-	6579	41	NNC	ENSMUSG00000026116.12	novel	6698	42	NA	NA	-82	-1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	55.9871413808564	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTTTTGTTTTGC	7139	False	NA	-2	True	AATAAA	-21	NA	36978690	36831275	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835361_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ES_00002729	chr1	-	6697	42	FSM	ENSMUSG00000026116.12	ENSMUST00000194563.6	6698	42	0	1	0	-1	multi-exon	FALSE	canonical	3	8	junction_41	58.4663297908698	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTTTTGTTTTGC	6926	False	NA	-2	True	AATAAA	-21	NA	36978903	36831275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245_36978638_36978777
ES_00002731	chr1	-	3836	4	NNC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	48	3332	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.430093105357	53	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	6320	False	NA	NA	False	NA	NA	NA	37469136	37452832	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_37452858_37456168_37459709_37467422_37467507_37468949
ES_00002735	chr1	-	2618	4	FSM	ENSMUSG00000026090.17	ENSMUST00000160023.6	2538	4	-170	90	-170	-90	multi-exon	FALSE	canonical	1	3	junction_1	1.4142135623731	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTCCAAAAAGAATTTTT	1211	False	NA	-91	True	NA	NA	NA	37664493	37650847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37651481_37652417_37652563_37653561_37653750_37662841
ES_00002737	chr1	-	4237	8	FSM	ENSMUSG00000060771.16	ENSMUST00000155852.7	2861	8	-347	-1029	-341	-3	multi-exon	FALSE	canonical	2	9	junction_4	6.49960752347276	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTACAGTATAATTTT	NA	False	NA	NA	False	TATAAA	-45	NA	37904501	37871486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ES_00002738	chr1	-	4193	8	FSM	ENSMUSG00000060771.16	ENSMUST00000193669.2	1981	8	-347	-1865	-341	-3	multi-exon	FALSE	canonical	2	6	junction_4	7.29830844253989	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTACAGTATAATTTT	NA	False	NA	NA	False	TATAAA	-45	NA	37904501	37871486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880390_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ES_00002739	chr1	-	723	4	FSM	ENSMUSG00000026088.16	ENSMUST00000127170.2	723	4	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_3	3.09120616516523	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCAAAGCAAATATTGGG	NA	False	NA	-100	True	NA	NA	NA	37920949	37918068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779
ES_00002740	chr1	-	989	3	FSM	ENSMUSG00000026088.16	ENSMUST00000138806.2	989	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	23	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTTGGTAACGATGGGA	NA	False	NA	NA	False	NA	NA	NA	37929357	37921009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_37921780_37924295_37924398_37929240
ES_00002741	chr1	-	3586	18	FSM	ENSMUSG00000026082.12	ENSMUST00000194650.6	3576	18	0	-10	0	0	multi-exon	TRUE	canonical	3	30	junction_14	47.4450328471644	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTTTTTTTTTTCTTGTG	2547	False	NA	0	True	AATAAA	-22	NA	38127213	38091866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_38092280_38092696_38092800_38092920_38093078_38093164_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38114105_38118370_38118480_38122784_38122902_38124625_38124734_38127051
ES_00002744	chr1	-	1269	1	FSM	ENSMUSG00000077704.3	ENSMUST00000104516.3	110	1	2	-1161	2	1161	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGGTTATTCAGT	NA	False	NA	-13	True	AATAAA	-8	NA	39587933	39586664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_39586700_39587900
ES_00002745	chr1	-	259	2	FSM	ENSMUSG00000048234.14	ENSMUST00000153381.2	509	2	250	0	250	0	multi-exon	FALSE	canonical	3	169	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGAGTGTGACATCCCA	NA	False	NA	NA	False	NA	NA	NA	39597588	39594685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_39594752_39597395
ES_00002746	chr1	-	5563	4	FSM	ENSMUSG00000050967.6	ENSMUST00000053355.6	6091	4	503	25	503	-25	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAGAAATGCTATTG	NA	False	NA	NA	False	NA	NA	NA	39690139	39657598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_39662412_39664037_39664152_39686943_39687114_39689673
ES_00002747	chr1	-	1122	6	NIC	ENSMUSG00000026049.12	novel	935	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	156.042814637522	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141581	44125772	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141487
ES_00002749	chr1	-	309	1	FSM	ENSMUSG00000101567.2	ENSMUST00000186385.2	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCCTAATCATGCTCTG	NA	False	NA	NA	False	NA	NA	NA	44503391	44503082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_44503100_44503400
ES_00002750	chr1	-	322	1	FSM	ENSMUSG00000025993.11	ENSMUST00000186755.2	2792	1	981	1489	40	-1489	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTTGAGTAATCGAATG	NA	False	NA	NA	False	NA	NA	NA	45964702	45964380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_45964400_45964700
ES_00002751	chr1	-	951	1	FSM	ENSMUSG00000100213.2	ENSMUST00000189404.2	951	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATGGTGACTTTGTTTT	3495	False	NA	NA	False	AATAAA	-18	NA	46889639	46888688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_46888700_46889600
ES_00002752	chr1	-	270	1	FSM	ENSMUSG00000100160.2	ENSMUST00000185210.2	297	1	200	-173	200	173	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGCCTTCGTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	46935839	46935569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_46935600_46935800
ES_00002753	chr1	-	708	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTTATATTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	51517558	51510300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
ES_00002757	chr1	-	5914	16	NNC	ENSMUSG00000026103.15	novel	5596	15	NA	NA	0	0	intron_retention	FALSE	canonical	1	9	junction_8	72.6091515505373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGTTTTTTTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	52272382	52224438	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52240379_52243504_52243676_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ES_00002760	chr1	-	4835	7	FSM	ENSMUSG00000041439.16	ENSMUST00000156876.8	4932	7	92	5	-12	-5	multi-exon	TRUE	canonical	2	6	junction_6	2.05480466765633	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATAACCTCTCTTGAGA	NA	False	NA	-4	True	NA	NA	NA	52766529	52695449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52697705_52699965_52700247_52701548_52701648_52702443_52702606_52715636_52715735_52747322_52748915_52766181
ES_00002762	chr1	-	363	3	FSM	ENSMUSG00000026102.10	ENSMUST00000162351.2	425	3	0	62	0	25	multi-exon	FALSE	canonical	2	7	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTATAAGAATCTTACT	NA	False	NA	NA	False	AAAAAG	-40	NA	52856610	52836199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52836261_52838443_52838696_52856560
ES_00002763	chr1	-	712	5	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	14	280	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	21.70685375636	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAGTGAAGTTGATACAA	NA	False	NA	NA	False	AATAAA	-32	NA	53226753	53197455	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_53197948_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ES_00002764	chr1	-	3077	13	NIC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_12	45.7446870017589	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6096	False	NA	NA	False	AATAAA	-18	NA	53336133	53228345	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53335977
ES_00002765	chr1	-	4274	19	NNC	ENSMUSG00000041303.8	novel	4582	18	NA	NA	-38	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	40	junction_1	37.832966224357	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6662	False	NA	-6	True	AATAAA	-19	NA	54478168	54435162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_54435782_54436127_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
ES_00002767	chr1	-	328	3	FSM	ENSMUSG00000052331.15	ENSMUST00000178685.2	1606	3	531	747	531	-747	multi-exon	FALSE	canonical	1	2	junction_1	2.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAAATCACCTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	54774272	54768892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_54769034_54772086_54772156_54774154
ES_00002769	chr1	-	2490	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	0	58	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAGTTGGGTATATAGAA	4236	False	NA	52	True	AATGAA	-15	NA	55127402	55116935	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ES_00002770	chr1	-	381	1	Intergenic	novelGene_66	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55155036	55154655	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_55154700_55155000
ES_00002771	chr1	-	2580	10	FSM	ENSMUSG00000025977.16	ENSMUST00000173983.8	2635	10	0	55	0	-55	multi-exon	FALSE	canonical	2	3	junction_1	9.11382073529328	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAGTTAGCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	55399900	55308069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_55309825_55339245_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774
ES_00002773	chr1	-	1756	7	FSM	ENSMUSG00000048495.17	ENSMUST00000097732.11	1754	7	0	-2	0	-1	multi-exon	FALSE	canonical	3	102	junction_5	15.6178316890235	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGGTGGAGTGGCCGTC	NA	False	NA	-16	True	AATAAA	-45	NA	57445630	57427396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57433251_57435885_57435956_57440546_57440683_57445542
ES_00002775	chr1	-	1806	9	FSM	ENSMUSG00000048495.17	ENSMUST00000160837.8	766	9	-779	-261	-121	0	multi-exon	FALSE	canonical	3	10	junction_4	49.931828526502	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAATAGGAAAGATA	NA	False	NA	NA	False	GATAAA	-15	NA	57446381	57427563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ES_00002777	chr1	-	3161	7	FSM	ENSMUSG00000054770.17	ENSMUST00000161608.8	2495	7	-524	-142	0	-10	multi-exon	FALSE	canonical	0	0	junction_6	29.1228241914978	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTCAGAAGGTGGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	58009207	57994269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58008565
ES_00002778	chr1	-	797	8	NNC	ENSMUSG00000026035.16	novel	1033	7	NA	NA	2	50123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.146586247647	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCACGTTTAGTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	58484333	58420029	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_58420061_58470159_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ES_00002779	chr1	-	923	3	FSM	ENSMUSG00000026034.18	ENSMUST00000141570.8	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58452596	58451158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58451500_58451805_58451897_58452105
ES_00002783	chr1	-	812	7	NIC	ENSMUSG00000026035.16	novel	1033	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	73.5974410787042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484598	58470152	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484530
ES_00002785	chr1	-	424	2	Antisense	novelGene_ENSMUSG00000026036.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACACAACTGTAATGCA	9694	False	NA	NA	False	AATGAA	-7	NA	58495261	58491488	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_58491864_58495212
ES_00002786	chr1	-	307	2	Intergenic	novelGene_69	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	2762	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTCATAACAAGATCAGAC	NA	False	NA	NA	False	NA	NA	NA	58540415	58535970	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_58536227_58540364
ES_00002790	chr1	-	1762	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	22	-3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTTTATTAACTGAAGG	4362	False	NA	-13	True	AATAAA	-21	NA	59158943	59139751	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
ES_00002791	chr1	-	237	2	Intergenic	novelGene_72	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	838	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATCTTAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	59626721	59626185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_59626303_59626601
ES_00002797	chr1	-	383	1	Intergenic	novelGene_76	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGTCCTTGCATGGATAT	2934	False	NA	NA	False	NA	NA	NA	63085554	63085171	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_63085200_63085600
ES_00002798	chr1	-	2820	21	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	2	58896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.621191955928	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTCTCATGGTAGTTCA	NA	False	NA	NA	False	NA	NA	NA	63215847	63123858	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_63123889_63182753_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
ES_00002803	chr1	-	6783	2	FSM	ENSMUSG00000045005.10	ENSMUST00000116133.4	2895	2	19	-3907	19	-4	multi-exon	FALSE	canonical	3	23	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGGAGGCGTTGAGTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	64776889	64769720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_64776013_64776398
ES_00002805	chr1	-	711	2	Genic_Genomic	ENSMUSG00000084416.4	novel	654	1	NA	NA	0	34829	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCTGATTGCTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	65033763	64998280	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_64998310_65033081
ES_00002807	chr1	-	1737	4	NNC	ENSMUSG00000044816.11	novel	594	7	NA	NA	13008	-8	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	13.6707311029399	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTATGCTTTTTGTT	9783	False	NA	NA	False	AATAAA	-22	NA	65149265	65146479	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_65147965_65148620_65148736_65149035_65149124_65149216
ES_00002810	chr1	-	2355	11	NNC	ENSMUSG00000025950.17	novel	2302	9	NA	NA	0	36564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	367.62427830599	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGAATGGATAACATGTA	NA	False	NA	NA	False	NA	NA	NA	65225597	65161210	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_65161240_65197786_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148_65218225_65225445
ES_00002811	chr1	-	2358	11	NNC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	0	36564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	408.890743353283	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGAATGGATAACATGTA	NA	False	NA	NA	False	NA	NA	NA	65225618	65161210	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_65161241_65197782_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65220786_65220858_65225463
ES_00002813	chr1	-	1139	1	FSM	ENSMUSG00000103756.2	ENSMUST00000194465.2	1139	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATATATGTATATTAGC	9740	False	NA	NA	False	NA	NA	NA	66839956	66838817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66838800_66840000
ES_00002814	chr1	-	1600	2	FSM	ENSMUSG00000026004.16	ENSMUST00000189846.2	1600	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGAAAAAAGAAAGG	6640	False	NA	NA	False	AATAAA	-44	NA	66856705	66839900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66841328_66856532
ES_00002815	chr1	-	521	1	FSM	ENSMUSG00000082769.4	ENSMUST00000121857.2	495	1	-38	12	-38	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCCAGATAGTTAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	66888799	66888278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_66888300_66888800
ES_00002817	chr1	-	7965	45	FSM	ENSMUSG00000026193.16	ENSMUST00000187938.7	7965	45	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_7	505.24113791141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	71692331	71624681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636832_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00002818	chr1	-	7410	44	FSM	ENSMUSG00000026193.16	ENSMUST00000189821.7	7410	44	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	581.548289651274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	71692331	71624681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636547_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00002820	chr1	-	7797	44	FSM	ENSMUSG00000026193.16	ENSMUST00000186129.7	7797	44	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_13	520.876343765833	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTGGACGTCATTTC	NA	False	NA	-10	True	AATAAA	-14	NA	71692359	71624682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ES_00002823	chr1	-	200	1	FSM	ENSMUSG00000101834.2	ENSMUST00000191383.2	351	1	137	14	137	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTTGGCTTCTGAGAA	NA	False	NA	NA	False	AAAAAG	-40	NA	71749077	71748877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71748900_71749100
ES_00002824	chr1	-	558	1	FSM	ENSMUSG00000100319.2	ENSMUST00000191412.2	877	1	86	233	86	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	3897	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTCACTGCTGTCGCTG	NA	False	NA	NA	False	NA	NA	NA	71753997	71753439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71753400_71754000
ES_00002825	chr1	-	9963	33	NIC	ENSMUSG00000055322.17	novel	9916	33	NA	NA	-35	2	combination_of_known_junctions	FALSE	canonical	3	23	junction_32	14.0823124321789	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCCTGGCTTCGTTTGG	NA	False	NA	0	True	TATAAA	-25	NA	74130545	73949387	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74130331
ES_00002828	chr1	-	2764	6	FSM	ENSMUSG00000006299.14	ENSMUST00000186833.2	2762	6	0	-2	0	2	multi-exon	FALSE	canonical	3	1233	junction_5	29.3462092952395	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGTCTGTGTGCATTT	NA	False	NA	-3	True	AATAAA	-15	NA	74323175	74319002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320802_74320894_74321710_74322252
ES_00002831	chr1	-	10773	11	FSM	ENSMUSG00000006301.18	ENSMUST00000113796.8	11011	11	240	-2	-1	0	multi-exon	FALSE	canonical	3	102	junction_1	14.8579944810866	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCCTTGAGTTGCTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	74343280	74327409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356
ES_00002833	chr1	-	7295	26	NNC	ENSMUSG00000033364.14	novel	7111	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_25	67.3903731997383	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAGTTTGATTTATTTG	NA	False	NA	-1	True	ATTAAA	-16	NA	74544962	74474669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483652_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74541734_74541889_74544818
ES_00002834	chr1	-	4945	25	NNC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	48.858195462879	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCACCTCGAGCAGGAGT	NA	False	NA	-13	True	TTTAAA	-20	NA	74544965	74476900	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_74478634_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ES_00002835	chr1	-	3538	25	NNC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	0	14	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	57.6136407218136	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACGCATATACTGAATGAAT	NA	False	NA	NA	False	AATATA	-15	NA	74544965	74478271	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_74478634_74479118_74479258_74480690_74480761_74483571_74483652_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ES_00002836	chr1	-	7455	9	FSM	ENSMUSG00000026135.18	ENSMUST00000113737.8	7473	9	0	18	0	-18	multi-exon	FALSE	canonical	1	5	junction_7	16.2307578381294	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTTATTTCGGGATT	NA	False	NA	NA	False	NA	NA	NA	74627187	74604303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74618778_74624542_74624857_74626722
ES_00002838	chr1	-	1925	9	NIC	ENSMUSG00000033159.15	novel	2429	10	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	50.7222830716442	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGCCTTTTCCTTCTG	9311	False	NA	-14	True	AATAAA	-16	NA	75119338	75112412	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75119286
ES_00002842	chr1	-	3770	16	FSM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	0	-6	0	0	multi-exon	FALSE	canonical	3	19	junction_15	10.0013332444563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCATCTTTTTTTTTC	NA	False	NA	4	True	AATAAA	-19	NA	75168567	75157503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168467
ES_00002844	chr1	-	2336	17	FSM	ENSMUSG00000026200.14	ENSMUST00000113623.8	2339	17	3	0	3	0	multi-exon	FALSE	canonical	2	2	junction_16	4.97140259383607	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGGCTCCACACACCTT	5237	False	NA	NA	False	ATTAAA	-13	NA	75187419	75175990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75176402_75176554_75176771_75176973_75177106_75177587_75177702_75177841_75177932_75178042_75178118_75178386_75178506_75178693_75178735_75178830_75178953_75179051_75179111_75179218_75179394_75179490_75179586_75184962_75185024_75185330_75185482_75185699_75185867_75186024_75186148_75187234
ES_00002845	chr1	-	719	1	Genic_Genomic	ENSMUSG00000096094.3	novel	NA	NA	NA	NA	-696	-1217	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGATGGCCGAGAACCCC	10	True	NA	NA	False	NA	NA	NA	75209442	75208723	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_75208700_75209400
ES_00002849	chr1	-	3079	3	FSM	ENSMUSG00000032997.17	ENSMUST00000143496.8	3333	3	259	-5	259	-2	multi-exon	FALSE	canonical	3	112	junction_1	2.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGTGGAAACTGGTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	75455131	75451214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75452871_75453203_75453384_75453888
ES_00002850	chr1	-	2825	4	FSM	ENSMUSG00000032997.17_ENSMUSG00000026211.19	ENSMUST00000138683.2	2455	4	-365	-5	-177	-2	multi-exon	FALSE	canonical	1	2	junction_3	53.0722777603022	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGTGGAAACTGGTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	75456128	75451214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75452871_75453203_75453384_75453888_75454185_75455435
ES_00002851	chr1	-	2386	6	FSM	ENSMUSG00000026211.19	ENSMUST00000127507.8	2404	6	14	4	14	-4	multi-exon	FALSE	canonical	3	33	junction_3	4.87442304278158	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCTCATGGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	75480310	75472984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010
ES_00002852	chr1	-	6164	17	NIC	ENSMUSG00000026235.15	novel	6328	18	NA	NA	5	0	combination_of_known_splicesites	TRUE	canonical	2	12	junction_4	46.7940968499233	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTTGTCTTTGTTC	NA	False	NA	-3	True	AATAAA	-23	NA	77491711	77343821	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
ES_00002853	chr1	-	443	1	FSM	ENSMUSG00000072978.4	ENSMUST00000049117.7	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAAGGCCCCGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	78945796	78945353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_78945400_78945800
ES_00002854	chr1	-	2522	6	NNC	ENSMUSG00000054702.15	novel	2876	5	NA	NA	24	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.26066952223218	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTTGAACTTGGAG	NA	False	NA	NA	False	NA	NA	NA	79649658	79584598	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_79584844_79585160_79586920_79591919_79592058_79601398_79601508_79602823_79603003_79649566
ES_00002856	chr1	-	3968	24	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-143	0	at_least_one_novel_splicesite	FALSE	canonical	3	137	junction_8	176.953306241483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGATAGTGCTCATG	7744	False	NA	NA	False	NA	NA	NA	84817175	84726878	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738480_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
ES_00002859	chr1	-	1484	1	FSM	ENSMUSG00000099342.2	ENSMUST00000187562.2	1484	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAATACCATGGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	85943608	85942124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_85942100_85943600
ES_00002860	chr1	-	212	2	Antisense	novelGene_ENSMUSG00000101328.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAAATCTTAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	86414393	86359833	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_86359858_86414205
ES_00002861	chr1	-	1243	5	FSM	ENSMUSG00000026239.15	ENSMUST00000143674.8	1306	5	77	-14	-5	-14	multi-exon	FALSE	canonical	2	7	junction_3	145.167145043222	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATCTCCTTTATGTC	NA	False	NA	3	True	ATTAAA	-29	NA	86510274	86470729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475157_86475340_86510021
ES_00002863	chr1	-	2745	13	FSM	ENSMUSG00000026259.15	ENSMUST00000027477.15	2746	13	7	-6	7	6	multi-exon	FALSE	canonical	1	2	junction_2	3.91578004149024	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACCTATTTTTTAGG	NA	False	NA	NA	False	NA	NA	NA	87438077	87404549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_87405467_87406824_87406930_87407558_87407639_87408308_87408465_87408837_87409002_87410344_87410435_87412320_87412396_87413877_87414008_87415520_87415674_87417305_87417467_87430987_87431296_87436966_87437110_87437814
ES_00002864	chr1	-	4130	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	3	-640	at_least_one_novel_splicesite	FALSE	non_canonical	3	150	junction_1	84.2673387202895	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCGGTCTGCCCTGCGG	8648	False	NA	-17	True	AATAAA	-21	NA	88205298	88190832	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ES_00002866	chr1	-	466	2	Intergenic	novelGene_106	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	NA	False	NA	NA	False	NA	NA	NA	90556351	90550808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_90551035_90556111
ES_00002867	chr1	-	1776	6	FSM	ENSMUSG00000026304.14	ENSMUST00000027529.12	1831	6	53	2	36	0	multi-exon	FALSE	canonical	1	2	junction_1	1.2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTCATGAGGTTATAT	NA	False	NA	NA	False	ATTAAA	-16	NA	90897330	90885856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_90886722_90886889_90886984_90887723_90887850_90888832_90888985_90891865_90892026_90896951
ES_00002869	chr1	-	2683	12	FSM	ENSMUSG00000026309.15	ENSMUST00000187049.7	2683	12	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_8	208.010091935722	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTTGGAAGGTAAGATAT	NA	False	NA	-13	True	AATAAA	-26	NA	91326422	91301582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_91303261_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316076_91316169_91318328_91318386_91318853_91318920_91326372
ES_00002874	chr1	-	1483	11	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	0	5851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	393.293796035483	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAGGGACCCTGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	92401489	92360880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_92360913_92367207_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ES_00002878	chr1	-	518	1	FSM	ENSMUSG00000100351.2	ENSMUST00000189856.2	546	1	-68	96	-68	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAACAGATCATTCTAAAG	NA	False	NA	NA	False	NA	NA	NA	93235029	93234511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93234500_93235000
ES_00002879	chr1	-	2585	2	FSM	ENSMUSG00000026274.12	ENSMUST00000148355.2	742	2	-471	-1372	-471	57	multi-exon	FALSE	canonical	3	215	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGATGCCTTATGAGTGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	93239537	93236434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93237972_93238489
ES_00002880	chr1	-	4416	6	FSM	ENSMUSG00000026274.12	ENSMUST00000128655.8	2489	6	-1868	-59	-1868	59	multi-exon	FALSE	canonical	3	168	junction_5	24.3343378788082	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCCTTATGAGTGTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	93247003	93236432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742
ES_00002882	chr1	-	4409	28	FSM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	18	0	14	0	multi-exon	FALSE	canonical	3	54	junction_27	104.811974833924	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93373390	93335483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
ES_00002885	chr1	-	702	5	FSM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	8	3	8	0	multi-exon	FALSE	canonical	3	11	junction_4	175.089262948931	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	-1	True	AATAAA	-38	NA	93659640	93633111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93659578
ES_00002886	chr1	-	2823	5	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	0	-30	combination_of_known_junctions	FALSE	canonical	3	119	junction_3	852.002494127805	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTAGTTCTCAGCAGAAG	2338	False	NA	NA	False	NA	NA	NA	93729628	93720475	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93728633_93729419
ES_00002889	chr1	-	5448	28	NNC	ENSMUSG00000040648.16	novel	5882	28	NA	NA	436	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	53.5000737150627	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCAGTGTATTGTCCTC	9270	False	NA	83	True	AATAAA	-20	NA	97697700	97633767	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668668_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ES_00002890	chr1	-	3456	24	FSM	ENSMUSG00000026335.17	ENSMUST00000161567.8	3630	24	187	-13	0	7	multi-exon	TRUE	canonical	1	5	junction_2	5.01867966278542	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTATTTTTGTGATTTT	5967	False	NA	1	True	AATAAA	-25	NA	97904793	97748811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581
ES_00002891	chr1	-	4100	26	FSM	ENSMUSG00000026335.17	ENSMUST00000058762.15	4095	26	2	-7	2	7	multi-exon	FALSE	canonical	1	3	junction_12	6.89301095313216	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTATTTTTGTGATTTT	NA	False	NA	1	True	AATAAA	-25	NA	98023344	97748811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97791927_97792246_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
ES_00002892	chr1	-	489	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGCAACTTCTGAAGA	8543	False	NA	NA	False	NA	NA	NA	97877114	97876625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97876600_97877100
ES_00002893	chr1	-	634	1	FSM	ENSMUSG00000082431.4	ENSMUST00000117372.2	597	1	198	-235	198	235	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	99718552	99717918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_99717900_99718600
ES_00002894	chr1	-	3018	26	FSM	ENSMUSG00000056536.15	ENSMUST00000190811.7	3015	26	0	-3	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	16.302932251592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATAACTTGTTGCTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	105591387	105484527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_105484791_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
ES_00002898	chr1	-	2469	1	FSM	ENSMUSG00000100041.2	ENSMUST00000185629.2	2469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCAGCCTGATACTACCA	NA	False	NA	NA	False	NA	NA	NA	108307168	108304699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_108304700_108307200
ES_00002899	chr1	-	5698	3	NIC	ENSMUSG00000038702.7	novel	622	2	NA	NA	2	101	intron_retention	FALSE	canonical	3	7	junction_2	3.5	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGGTTTTTTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	111792646	111786330	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_111791371_111791824_111791962_111792125
ES_00002900	chr1	-	574	1	FSM	ENSMUSG00000101875.2	ENSMUST00000077111.5	574	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGAGGTCTCAGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	111809038	111808464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_111808500_111809000
ES_00002901	chr1	-	263	2	Intergenic	novelGene_128	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	2	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTTATGAATTGTCTC	NA	False	NA	NA	False	NA	NA	NA	117424683	117416125	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_117416203_117424497
ES_00002902	chr1	-	6448	14	NNC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	-503	46	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_13	30.8433722129643	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGCAGTAAATTTGGTGC	726	False	NA	43	True	NA	NA	NA	118981852	118761815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118929769_118929937_118981769
ES_00002905	chr1	-	2289	6	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	1772	11808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	506.498015790783	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCATTTTTTTAGTCAC	NA	False	NA	NA	False	NA	NA	NA	119430752	119386226	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_119386260_119398040_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119430561
ES_00002906	chr1	-	2286	6	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	29	11808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	419.874933760042	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCATTTTTTTAGTCAC	NA	False	NA	NA	False	NA	NA	NA	119432495	119386226	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_119386258_119398039_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ES_00002907	chr1	-	6468	17	FSM	ENSMUSG00000026383.15	ENSMUST00000191046.7	6870	17	46	356	-18	-356	multi-exon	FALSE	canonical	2	7	junction_1	22.0620573609988	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGTGGTTTCTAGATT	NA	False	NA	NA	False	NA	NA	NA	119576684	119518827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119523790_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ES_00002908	chr1	-	560	1	FSM	ENSMUSG00000102687.2	ENSMUST00000192036.2	926	1	351	15	351	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCTGTGTTCCATTAA	NA	False	NA	NA	False	NA	NA	NA	119559048	119558488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119558500_119559000
ES_00002909	chr1	-	554	6	FSM	ENSMUSG00000026384.14	ENSMUST00000166422.8	554	6	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	17.5772580341759	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAAACTTGGCAGGCTA	NA	False	NA	NA	False	NA	NA	NA	119764801	119692858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119692882_119693158_119693212_119693607_119693653_119711211_119711320_119730052_119730208_119764631
ES_00002914	chr1	-	5235	21	FSM	ENSMUSG00000036086.17	ENSMUST00000112538.4	4741	21	0	-494	0	8	multi-exon	TRUE	canonical	3	13	junction_20	44.0595903294618	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGGTACGTGTATCCCT	NA	False	NA	3	True	AATAAA	-30	NA	128030738	127881912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029511
ES_00002915	chr1	-	2044	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATATGTGTGATTGGTGC	NA	False	NA	NA	False	AATAAA	-16	NA	128030199	127914845	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
ES_00002917	chr1	-	2212	17	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	0	101274	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	490.395870063156	258	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	128345096	128190169	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_128190207_128291443_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ES_00002918	chr1	-	2211	17	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	0	101274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490.395870063156	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	128345096	128190169	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_128190206_128291443_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ES_00002919	chr1	-	1805	2	FSM	ENSMUSG00000045382.7	ENSMUST00000052172.7	1805	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTGTGCTATGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	128520027	128515935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_128517639_128519925
ES_00002920	chr1	-	1291	1	FSM	ENSMUSG00000089648.2	ENSMUST00000161109.2	1251	1	591	-631	591	631	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCCTTAAAATAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	129725004	129723713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_129723700_129725000
ES_00002921	chr1	-	2239	11	NNC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	0	-449	at_least_one_novel_splicesite	TRUE	non_canonical	3	19	junction_10	19.672569735548	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGACAGACAGACATACA	NA	False	NA	NA	False	NA	NA	NA	130390188	130367212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_130367260_130367283_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ES_00002926	chr1	-	3474	15	NIC	ENSMUSG00000026409.15	novel	4505	16	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	7.01492577818678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGAAATTTTCAATTCAC	3882	False	NA	NA	False	AATAAA	-27	NA	130643588	130616918	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_130618886_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
ES_00002927	chr1	-	1291	1	FSM	ENSMUSG00000104515.2	ENSMUST00000195439.2	1690	1	166	233	166	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCTGCAGAGTTTTAAG	5266	False	NA	NA	False	NA	NA	NA	130656392	130655101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_130655100_130656400
ES_00002928	chr1	-	2038	14	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	5018	-2	608	2	3prime_fragment	FALSE	canonical	1	4	junction_11	4.99822453684406	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAGCTATGGTACCTGA	539	False	NA	NA	False	AATAAA	-21	NA	131199670	131182336	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499
ES_00002931	chr1	-	487	1	FSM	ENSMUSG00000095841.3	ENSMUST00000179174.3	461	1	-61	35	-61	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAATGGAAGAATACATG	NA	False	NA	NA	False	AAGAAA	-41	NA	131560768	131560281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131560300_131560800
ES_00002933	chr1	-	2608	4	FSM	ENSMUSG00000042066.17	ENSMUST00000142609.8	2769	4	162	-1	161	0	multi-exon	FALSE	canonical	0	0	junction_3	13.490737563232	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTGAGGTCTGCTGA	NA	False	NA	0	True	AATAAA	-23	NA	132295463	132284052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_132285556_132286640_132286777_132288012_132288954_132295435
ES_00002934	chr1	-	3844	3	FSM	ENSMUSG00000042066.17	ENSMUST00000138717.2	4004	3	161	-1	161	0	multi-exon	FALSE	canonical	0	0	junction_2	15	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTGAGGTCTGCTGA	NA	False	NA	0	True	AATAAA	-23	NA	132295463	132284052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_132285556_132286640_132288954_132295435
ES_00002935	chr1	-	915	2	FSM	ENSMUSG00000097760.3	ENSMUST00000180835.2	1540	2	40	585	40	-585	multi-exon	FALSE	canonical	3	3	junction_1	0	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACCCTGTGAGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	132404743	132394755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_132395387_132404459
ES_00002938	chr1	-	6978	10	NIC	ENSMUSG00000054387.14	novel	7105	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_5	94.521537162989	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	-5	True	ATTAAA	-15	NA	132953095	132913957	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
ES_00002939	chr1	-	3490	12	FSM	ENSMUSG00000054387.14	ENSMUST00000067429.10	3490	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	148.060854140876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACCACATGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	132953086	132917582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132947091_132947170_132952985
ES_00002940	chr1	-	200	1	Intergenic	novelGene_140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAGAAGAAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	133139210	133139010	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_133139000_133139200
ES_00002941	chr1	-	3725	12	NIC	ENSMUSG00000070643.12	novel	1842	13	NA	NA	0	3	intron_retention	FALSE	canonical	3	38	junction_7	19.6485652326698	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCCCTTTCTCTGCTGGG	NA	False	NA	-5	True	AATAAA	-18	NA	133321008	133310037	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810
ES_00002942	chr1	-	3722	12	NIC	ENSMUSG00000070643.12	novel	3179	13	NA	NA	0	3	intron_retention	FALSE	canonical	3	41	junction_7	19.0410604607799	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCCCTTTCTCTGCTGGG	NA	False	NA	-5	True	AATAAA	-18	NA	133321008	133310037	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810
ES_00002943	chr1	-	4418	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-17	25	combination_of_known_splicesites	FALSE	canonical	3	25	junction_16	101.178060863015	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGTGATGCTATTGTTT	NA	False	NA	17	True	AATAAA	-37	NA	133589135	133547583	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588993
ES_00002944	chr1	-	4429	18	NNC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	135.690825039868	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589090	133547608	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563792_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583071_133583137_133588974
ES_00002945	chr1	-	5740	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	21	0	intron_retention	FALSE	canonical	3	133	junction_16	79.3516697996961	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589097	133547608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588974
ES_00002946	chr1	-	5721	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	21	0	intron_retention	FALSE	canonical	3	78	junction_16	90.1805264109165	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589097	133547608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588993
ES_00002947	chr1	-	10156	17	FSM	ENSMUSG00000094410.9	ENSMUST00000179598.4	10156	17	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_16	80.113981301643	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTGAACCATTTGCCA	NA	False	NA	-77	True	NA	NA	NA	133589056	133547677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082
ES_00002952	chr1	-	3108	8	NNC	ENSMUSG00000042305.13	novel	3149	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	245.748087376036	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289679	134273834	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283452_134288494_134288663_134289271_134289362_134289499
ES_00002954	chr1	-	228	1	Intergenic	novelGene_144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCTACAGCCTCCAGGG	9777	False	NA	NA	False	NA	NA	NA	134295058	134294830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_134294800_134295100
ES_00002955	chr1	-	1641	11	ISM	ENSMUSG00000097993.8	ENSMUST00000183317.8	6108	37	20845	-1	-203	0	3prime_fragment	FALSE	canonical	3	5	junction_8	4.2142615011411	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGTGTCTGCTTCTGCA	NA	False	NA	0	True	AATAAA	-19	NA	135039487	135036234	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_135036434_135036656_135036793_135037023_135037188_135037300_135037418_135037546_135037676_135037822_135037900_135037989_135038069_135038150_135038239_135038387_135038456_135038783_135038920_135039039
ES_00002956	chr1	-	256	2	FSM	ENSMUSG00000097993.8	ENSMUST00000183089.2	359	2	103	0	103	0	multi-exon	FALSE	canonical	3	10	junction_1	0	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGGGGCTTATAGCACAG	NA	False	NA	NA	False	GGGGCT	-5	NA	135038099	135037753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135037900_135037989
ES_00002958	chr1	-	248	1	FSM	ENSMUSG00000041926.16	ENSMUST00000189615.2	2275	1	2042	-15	-455	15	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAGTATAGACAAACATG	NA	False	NA	NA	False	NA	NA	NA	135205611	135205363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135205400_135205600
ES_00002963	chr1	-	11133	32	NNC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	-86	1569	at_least_one_novel_splicesite	TRUE	non_canonical	3	17	junction_29	18.0759756279196	325	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCAAGTAATTGGCATTT	NA	False	NA	NA	False	AGTAAA	-45	NA	135615929	135365016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_135369389_135369410_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292_135513094_135530282_135530387_135534899_135535643_135615656
ES_00002964	chr1	-	9944	32	NNC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	-48328	503	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_17	21.5806692704432	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACCTGATGTCTGTGCA	2783	False	NA	-9	True	AATAAA	-26	NA	135561771	135366082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135391652_135391677_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292_135513094_135530282_135530387_135534899_135535643_135561667
ES_00002970	chr1	-	217	2	Antisense	novelGene_ENSMUSG00000101413.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTACTCTTTCTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	136488158	136409309	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_136409341_136487972
ES_00002976	chr1	-	3737	8	FSM	ENSMUSG00000026393.11	ENSMUST00000027642.5	3737	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	49.1424418587104	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGTATCTATCAGGTC	NA	False	NA	-12	True	AATAAA	-16	NA	138547412	138411849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_138414849_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
ES_00002980	chr1	-	465	1	FSM	ENSMUSG00000099875.2	ENSMUST00000121422.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGGGCATGCACACAAAA	NA	False	NA	NA	False	NA	NA	NA	150141750	150141285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_150141300_150141800
ES_00002981	chr1	-	336	1	FSM	ENSMUSG00000100690.2	ENSMUST00000191094.2	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATCTAAGATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	150145012	150144676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_150144700_150145000
ES_00002984	chr1	-	876	1	FSM	ENSMUSG00000100954.6	ENSMUST00000186597.2	2498	1	495	1127	495	-1127	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTTTTTGTCCCCCTCTG	NA	False	NA	NA	False	CATAAA	-15	NA	151220487	151219611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_151219600_151220500
ES_00002986	chr1	-	625	2	FSM	ENSMUSG00000014980.15	ENSMUST00000161717.2	775	2	150	0	150	0	multi-exon	FALSE	canonical	3	411	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGCAGGCAGCAAGTGG	NA	False	NA	-108	True	NA	NA	NA	152247683	152246588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152247035_152247504
ES_00002987	chr1	-	249	1	FSM	ENSMUSG00000080950.2	ENSMUST00000119836.2	1401	1	1124	28	1124	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGCTGCTAGGATCA	9978	False	NA	NA	False	NA	NA	NA	152605186	152604937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_152604900_152605200
ES_00002988	chr1	-	5666	23	NNC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	0	19590	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.698286335647	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGTATCTAATGACTCTA	NA	False	NA	NA	False	NA	NA	NA	152778373	152693155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_152693193_152712745_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ES_00002989	chr1	-	6064	23	NIC	ENSMUSG00000042772.16	novel	5792	23	NA	NA	-124	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_6	78.6312137041966	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCGGTGTGTAGAGGATT	NA	False	NA	-4	True	ATTAAA	-18	NA	152778521	152712746	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ES_00002992	chr1	-	1596	4	FSM	ENSMUSG00000026479.14	ENSMUST00000188831.2	2255	4	46	613	46	-613	multi-exon	FALSE	canonical	1	4	junction_3	35.2357142052713	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGGACTCAGACTGTCT	NA	False	NA	NA	False	NA	NA	NA	153062147	153033667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153034734_153041864_153042054_153061654_153061848_153061999
ES_00002993	chr1	-	689	1	NIC	ENSMUSG00000073538.11	novel	766	4	NA	NA	4	-7294	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTCTCTGTTGTCATCT	NA	False	NA	NA	False	AGTAAA	-1	NA	153289975	153289286	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_153289300_153290000
ES_00002995	chr1	-	3958	1	FSM	ENSMUSG00000045968.8	ENSMUST00000190620.2	3121	1	-847	10	-847	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTTGACTTTGCTATG	NA	False	NA	NA	False	ATTAAA	-16	NA	153776821	153772863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_153772900_153776800
ES_00002997	chr1	-	3348	12	FSM	ENSMUSG00000033684.15	ENSMUST00000035325.15	3348	12	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	6.25887799202127	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTGTTTGACTTGATCC	NA	False	NA	-1	True	AATAAA	-23	NA	155688635	155653903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
ES_00002998	chr1	-	13293	38	FSM	ENSMUSG00000033671.19	ENSMUST00000138762.8	13307	38	11	3	11	-3	multi-exon	TRUE	canonical	2	6	junction_27	5.1646378667924	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCCATGTCCGGTGTAA	NA	False	NA	NA	False	AATAAA	-14	NA	155848990	155720712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155724474_155733768_155733892_155735914_155736062_155736181_155736587_155737393_155739358_155741785_155741869_155744416_155744554_155747654_155747816_155751067_155751213_155754655_155754865_155761652_155761853_155770339_155770501_155773180_155773328_155776531_155776620_155777185_155777371_155778332_155778530_155782234_155782399_155784949_155785076_155786363_155786501_155786881_155787023_155787633_155787745_155790461_155790626_155791194_155791398_155798059_155798247_155800310_155800484_155802159_155802302_155803858_155804920_155807253_155807376_155808534_155809197_155811560_155811708_155816462_155816577_155819844_155819959_155828899_155829514_155834306_155834467_155835465_155835578_155836889_155836934_155838220_155838307_155848594
ES_00002999	chr1	-	230	2	NNC	ENSMUSG00000026466.17	novel	658	2	NA	NA	-3072	-1242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGAAGATGACTCTGGT	NA	False	NA	NA	False	NA	NA	NA	155897437	155894311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_155894345_155897240
ES_00003000	chr1	-	231	2	NNC	ENSMUSG00000026466.17	novel	658	2	NA	NA	-3072	-1242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGAAGATGACTCTGGT	NA	False	NA	NA	False	NA	NA	NA	155897437	155894311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_155894346_155897240
ES_00003003	chr1	-	1595	7	FSM	ENSMUSG00000026600.13	ENSMUST00000191379.7	1952	7	0	357	0	69	multi-exon	FALSE	canonical	2	51	junction_4	11.9222015118387	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTAACTGTCATCTTAG	1790	False	NA	NA	False	ACTAAA	-21	NA	156301810	156268076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
ES_00003006	chr1	-	4519	9	NNC	ENSMUSG00000033557.18	novel	4532	9	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_4	62.5374887567449	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATAAAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	156546672	156506140	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526300_156526407_156529968_156530056_156533237_156533738_156544457_156544551_156546435
ES_00003007	chr1	-	10046	18	FSM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_6	3.97135068932194	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTACTATCTTTTAC	4366	False	NA	3	True	AATAAA	-27	NA	157240165	156962752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156968446_156973759_156973848_156975199_156975403_156977342_156977478_156984475_156985338_156986228_156986429_156988694_156988897_156991272_156991510_156992176_156992322_157001712_157001858_157003232_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
ES_00003008	chr1	-	1579	1	FSM	ENSMUSG00000103808.2	ENSMUST00000194997.2	2397	1	254	564	254	-564	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAGTAGGAAGAAAACAG	NA	False	NA	NA	False	NA	NA	NA	157234037	157232458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_157232500_157234000
ES_00003010	chr1	-	1154	2	FSM	ENSMUSG00000014226.11	ENSMUST00000194167.2	589	2	-292	-273	-143	273	multi-exon	FALSE	canonical	3	4235	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTCAGCTTTTCACAGA	7153	False	NA	NA	False	NA	NA	NA	160040588	160035383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160036166_160040216
ES_00003011	chr1	-	617	7	FSM	ENSMUSG00000026721.17	ENSMUST00000235109.2	594	7	0	-23	0	0	multi-exon	FALSE	canonical	1	4	junction_4	3.60555127546399	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGCTATCATTGCTGAG	NA	False	NA	NA	False	GATAAA	-6	NA	160269474	160064224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160064280_160066100_160066206_160075028_160075140_160085012_160085106_160169605_160169735_160219751_160219794_160269392
ES_00003012	chr1	-	643	5	FSM	ENSMUSG00000026721.17	ENSMUST00000191651.6	643	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.14578098794425	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGCAGTTTGAGAATCAA	NA	False	NA	NA	False	NA	NA	NA	160269437	160084502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160084837_160085012_160085106_160169605_160169735_160219751_160219794_160269392
ES_00003014	chr1	-	4786	11	FSM	ENSMUSG00000026705.17	ENSMUST00000140905.8	4817	11	15	16	15	7	multi-exon	FALSE	canonical	3	70	junction_3	13.23064624272	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTTTTAAAGTTT	NA	False	NA	-13	True	AATAAA	-21	NA	160959066	160915960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ES_00003015	chr1	-	1466	6	NNC	ENSMUSG00000026701.16	novel	959	6	NA	NA	0	78015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	701.159439785274	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTATGGACCTGTCCAC	NA	False	NA	NA	False	NA	NA	NA	161078736	160989666	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_160989696_161068578_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ES_00003017	chr1	-	913	5	FSM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	765.536209137099	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078739	161069133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078563
ES_00003018	chr1	-	959	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCGCTCGCTATACTA	NA	False	NA	-54	True	NA	NA	NA	161078736	161069167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
ES_00003020	chr1	-	1252	2	ISM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	389	-726	389	726	3prime_fragment	FALSE	canonical	3	106	junction_1	0	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAGAGAACACAGGTAA	NA	False	NA	NA	False	NA	NA	NA	161554669	161553084	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_161553876_161554208
ES_00003021	chr1	-	3317	3	FSM	ENSMUSG00000026694.20	ENSMUST00000159255.2	4132	3	6	809	-3	-809	multi-exon	FALSE	canonical	3	51	junction_1	20.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTCTCACAGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	162376101	162369826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_162371955_162373336_162374097_162375672
ES_00003024	chr1	-	10126	34	FSM	ENSMUSG00000040225.16	ENSMUST00000182593.8	9022	34	0	-1104	0	0	multi-exon	FALSE	canonical	3	17	junction_32	42.623622398965	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTGGAACTTCTAATCTA	3489	False	NA	NA	False	AATAAA	-19	NA	162568050	162499353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_162501226_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550851_162552272_162552439_162567893
ES_00003026	chr1	-	3678	9	FSM	ENSMUSG00000026577.14	ENSMUST00000027866.11	3948	9	7	263	-6	-263	multi-exon	FALSE	canonical	3	8	junction_8	81.786975582913	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGGAAAGTGTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	164135046	164117631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164131472_164131494_164134007_164134086_164134715_164134924_164135010
ES_00003027	chr1	-	277	1	Intergenic	novelGene_188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTATGGAGAACATCCTC	NA	False	NA	NA	False	NA	NA	NA	164976375	164976098	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_164976100_164976400
ES_00003028	chr1	-	3798	7	FSM	ENSMUSG00000040848.12	ENSMUST00000192185.6	3798	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	27.3780122645081	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGGCTGTGGATTTCC	NA	False	NA	NA	False	AATGAA	-18	NA	165021890	165003439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015816_165015904_165021808
ES_00003029	chr1	-	689	4	FSM	ENSMUSG00000040843.11	ENSMUST00000142191.2	689	4	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	35.3553390593274	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTACCAGAAACAATGAT	NA	False	NA	NA	False	NA	NA	NA	165064491	165050013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165050230_165055073_165055174_165055836_165056017_165064298
ES_00003030	chr1	-	3034	7	FSM	ENSMUSG00000026571.13	ENSMUST00000193353.2	3034	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	4.91313432432789	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATTTGACTTTTTATTT	5168	False	NA	-2	True	ATTAAA	-24	NA	165179567	165157073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165167593_165178452_165178850_165179040_165179110_165179529
ES_00003031	chr1	-	805	1	NIC	ENSMUSG00000040723.15	novel	5001	6	NA	NA	51957	-6340	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGCTGTATCAGGACCAG	NA	False	NA	NA	False	NA	NA	NA	165483660	165482855	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_165482900_165483700
ES_00003032	chr1	-	1623	2	FSM	ENSMUSG00000097823.3	ENSMUST00000181309.3	1627	2	0	4	0	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGCCTTTGATCAGTGA	NA	False	NA	NA	False	AATAAA	-10	NA	166828410	166825867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_166827458_166828377
ES_00003033	chr1	-	202	1	Intergenic	novelGene_191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTGGCTTCCCCAGTC	NA	False	NA	NA	False	NA	NA	NA	168224119	168223917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_168223900_168224100
ES_00003035	chr1	-	302	4	FSM	ENSMUSG00000038473.15	ENSMUST00000159665.2	3394	4	508	2584	-44	-2584	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTAAGAGCCCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	170416910	170202820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170202876_170218299_170218393_170342183_170342256_170416828
ES_00003036	chr1	-	201	1	Intergenic	novelGene_193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCATTGACCTGAAGGAG	8034	False	NA	NA	False	NA	NA	NA	170636351	170636150	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_170636200_170636400
ES_00003037	chr1	-	849	3	ISM	ENSMUSG00000026656.16	ENSMUST00000159969.8	1578	10	12955	-211	-1962	0	3prime_fragment	FALSE	canonical	2	8	junction_2	23.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170791161	170788126	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_170788670_170788764_170788803_170790893
ES_00003038	chr1	-	1462	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170803696	170788126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
ES_00003040	chr1	-	202	1	Intergenic	novelGene_198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCCGGCTTCTTAACCT	7630	False	NA	NA	False	NA	NA	NA	170970998	170970796	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_170970800_170971000
ES_00003041	chr1	-	4410	8	FSM	ENSMUSG00000062729.13	ENSMUST00000155083.9	4412	8	0	2	0	-2	multi-exon	TRUE	canonical	3	87	junction_6	18.2633792165679	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACCTGTGGGGATTTTCC	5189	False	NA	NA	False	AATAAA	-10	NA	171108760	171103564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171104773_171104858_171104902_171105019_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
ES_00003042	chr1	-	1927	12	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	121	0	intron_retention	FALSE	canonical	3	42	junction_9	30.0522960165736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5377	False	NA	-15	True	AGTAAA	-16	NA	171108572	171104564	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
ES_00003048	chr1	-	2932	5	FSM	ENSMUSG00000013997.11	ENSMUST00000141357.2	2932	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	5.87367006223537	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	884	False	NA	NA	False	NA	NA	NA	171173208	171168896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171172108_171172481
ES_00003049	chr1	-	702	1	FSM	ENSMUSG00000091993.3	ENSMUST00000181170.2	3544	1	1316	1526	1316	702	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAACAGGTAACAAAG	NA	False	NA	NA	False	NA	NA	NA	171330363	171329661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_171329700_171330400
ES_00003052	chr1	-	771	5	FSM	ENSMUSG00000007122.12	ENSMUST00000170638.2	990	5	104	115	104	-115	multi-exon	FALSE	canonical	1	2	junction_3	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCCTGGCCAGGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	172041418	172037576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_172038071_172039514_172039590_172040594_172040696_172040903_172040959_172041372
ES_00003053	chr1	-	3082	20	FSM	ENSMUSG00000007097.15	ENSMUST00000097464.4	3186	20	0	104	0	-104	multi-exon	FALSE	canonical	3	93	junction_16	22.3000192539325	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATTCCAACACCAGCTCA	NA	False	NA	NA	False	NA	NA	NA	172125631	172105753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
ES_00003054	chr1	-	2912	3	FSM	ENSMUSG00000026526.15	ENSMUST00000133218.2	936	3	-972	-1004	-972	0	multi-exon	FALSE	canonical	3	851	junction_2	99	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAATAGACTAATTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	175435185	175427939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_175429133_175431503_175431658_175433620
ES_00003055	chr1	-	7132	20	NNC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	-157	-1	at_least_one_novel_splicesite	TRUE	non_canonical	3	24	junction_5	13.1345055276955	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGATTTCATGTCTTTT	NA	False	NA	-1	True	AATAAA	-26	NA	176641790	176561219	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570066_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176588916_176589067_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610119_176616029_176616112_176620101_176620192_176621070_176621216_176641461
ES_00003057	chr1	-	6230	20	NNC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	-15	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	21.8308785351788	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTATAATTTGGGTGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	176641648	176561962	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570066_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610118_176616032_176616112_176620101_176620192_176621070_176621216_176634564_176634702_176641461
ES_00003059	chr1	-	367	1	FSM	ENSMUSG00000057335.12	ENSMUST00000193765.2	2623	1	2367	-111	2367	111	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTCGTAAAGCATCTAT	NA	False	NA	NA	False	AGTAAA	-33	NA	176568303	176567936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_176567900_176568300
ES_00003062	chr1	-	10231	17	NNC	ENSMUSG00000039630.11	novel	2844	17	NA	NA	0	24848	intron_retention	FALSE	non_canonical	0	0	junction_1	2283.95617484087	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCATGTCTTGAAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	178165362	178123824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_178123856_178148671_178150761_178151184_178151279_178151530_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ES_00003064	chr1	-	2977	15	NNC	ENSMUSG00000039630.11	novel	7640	14	NA	NA	0	24848	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1651.89265599759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCATGTCTTGAAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	178165362	178123824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_178123857_178156602_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ES_00003065	chr1	-	2978	15	NNC	ENSMUSG00000039630.11	novel	7640	14	NA	NA	0	24848	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1651.89265599759	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCATGTCTTGAAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	178165362	178123824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_178123856_178156600_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ES_00003068	chr1	-	746	2	FSM	ENSMUSG00000026491.14	ENSMUST00000147137.2	746	2	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179631171	179626411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_179626904_179630917
ES_00003073	chr1	-	595	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	5	0	5	0	multi-exon	FALSE	canonical	1	1	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCCAAGTACCACAGACC	NA	False	NA	NA	False	NA	NA	NA	180596216	180591061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_180591486_180596045
ES_00003074	chr1	-	1160	5	NNC	ENSMUSG00000060743.13	novel	724	5	NA	NA	0	18292	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1107.32165606927	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCTCCAAAAAGCATAAAC	NA	False	NA	NA	False	NA	NA	NA	180641168	180610104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_180610186_180630129_180630771_180637681_180637836_180639363_180639515_180641035
ES_00003075	chr1	-	1163	5	NNC	ENSMUSG00000060743.13	novel	724	5	NA	NA	0	18292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1320.47744679718	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCTCCAAAAAGCATAAAC	NA	False	NA	NA	False	NA	NA	NA	180641168	180610104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_180610185_180630129_180630771_180637681_180637836_180639363_180639515_180641031
ES_00003077	chr1	-	6925	16	NNC	ENSMUSG00000038733.15	novel	7045	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.3619965294383	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTTGCGTTCCATCTC	NA	False	NA	-1	True	AATAAA	-21	NA	181039543	181000790	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_181001379_181001418_181001680_181001713_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ES_00003078	chr1	-	6923	16	NNC	ENSMUSG00000038733.15	novel	7045	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.3619965294383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTTGCGTTCCATCTC	NA	False	NA	-1	True	AATAAA	-21	NA	181039543	181000790	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_181001379_181001418_181001690_181001725_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ES_00003081	chr1	-	2889	15	FSM	ENSMUSG00000022995.17	ENSMUST00000078719.13	2889	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	151.403518817114	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGATTTTTTTCCAGAG	5962	False	NA	-27	True	AATAAA	-14	NA	181847226	181733077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181750066_181751124_181751406_181758242_181758328_181763224_181763282_181783958_181784137_181789318_181789485_181847094
ES_00003084	chr1	-	1113	1	FSM	ENSMUSG00000103317.2	ENSMUST00000191884.2	2225	1	1160	-48	1160	48	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTCTTTGTCAGTAG	NA	False	NA	NA	False	AAAAAG	-43	NA	181796328	181795215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181795200_181796300
ES_00003085	chr1	-	5015	11	NNC	ENSMUSG00000030768.13	novel	4984	10	NA	NA	0	74822	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.5973855092228	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	183003049	182793007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_182793039_182867829_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
ES_00003087	chr1	-	3372	14	NNC	ENSMUSG00000046836.14	novel	3430	14	NA	NA	65	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	35.6111477792256	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGGATTTATGTGGTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	183078471	183057911	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076018_183076340_183076429_183078446
ES_00003089	chr1	-	805	1	FSM	ENSMUSG00000044854.8	ENSMUST00000050306.8	967	1	-2	164	-2	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACCCTGGAATTCAAAG	NA	False	NA	NA	False	NA	NA	NA	183766197	183765392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_183765400_183766200
ES_00003092	chr1	-	684	2	FSM	ENSMUSG00000026608.14	ENSMUST00000193590.2	688	2	4	0	4	0	multi-exon	FALSE	canonical	3	230	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGGAGGAGACAGAGAG	NA	False	NA	NA	False	NA	NA	NA	188714001	188710745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_188710850_188713421
ES_00003094	chr1	-	484	1	FSM	ENSMUSG00000026605.15	ENSMUST00000194624.2	3389	1	2784	121	2784	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGAGGGAGAATAGGAT	2211	False	NA	NA	False	NA	NA	NA	189400555	189400071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_189400100_189400600
ES_00003095	chr1	-	5579	12	ISM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	0	23185	0	5	5prime_fragment	FALSE	canonical	3	35	junction_4	5.58036700117193	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTTCCTTTCATACTGCA	NA	False	NA	3	True	AATAAA	-17	NA	190643967	190528260	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
ES_00003096	chr1	-	3385	10	NNC	ENSMUSG00000066595.10	novel	4040	10	NA	NA	4711	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	11.7041725175677	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATATGTCCTTTAAAAA	NA	False	NA	1	True	AATAAA	-20	NA	190753453	190738043	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190752632_190752760_190753272
ES_00003097	chr1	-	386	1	FSM	ENSMUSG00000103576.2	ENSMUST00000192879.2	856	1	-61	531	-61	-531	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATCGCAGCGATGGTAC	NA	False	NA	NA	False	NA	NA	NA	190810938	190810552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190810600_190810900
ES_00003099	chr1	-	677	1	FSM	ENSMUSG00000097416.4	ENSMUST00000180429.3	3287	1	171	2439	171	-2439	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAAAATTCTGAGAAATG	NA	False	NA	NA	False	NA	NA	NA	191721912	191721235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191721200_191721900
ES_00003101	chr1	-	4532	11	FSM	ENSMUSG00000037395.17	ENSMUST00000192128.6	1578	11	-108	-2846	0	4	multi-exon	FALSE	canonical	3	29	junction_1	6.37887137352682	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAAAAAGTATTTAATTCCA	NA	False	NA	NA	False	AATAAA	-31	NA	191822332	191782841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ES_00003102	chr1	-	5489	12	FSM	ENSMUSG00000016181.11	ENSMUST00000195291.6	5504	12	0	15	0	-15	multi-exon	FALSE	canonical	2	5	junction_2	17.8908536584507	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACCAAAAAAAATAGTGCA	NA	False	NA	NA	False	NA	NA	NA	192812552	192786740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_192790095_192796064_192796289_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
ES_00003105	chr1	-	900	6	FSM	ENSMUSG00000016481.16	ENSMUST00000191775.2	913	6	13	0	-12	0	multi-exon	FALSE	canonical	3	121	junction_5	57.7775042728569	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATATTATTATGGAGAG	NA	False	NA	NA	False	AATGAA	-3	NA	194813881	194797089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ES_00003112	chr1	+	386	1	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAGGCGCAGACAGTTAT	NA	False	NA	NA	False	NA	NA	NA	7687215	7687601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_7687200_7687600
ES_00003114	chr1	+	1192	1	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGGTCGAACGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	8018449	8019641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_8018400_8019600
ES_00003115	chr1	+	202	1	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTACCTGACGGTTGCACT	NA	False	NA	NA	False	NA	NA	NA	8925411	8925613	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_8925400_8925600
ES_00003120	chr1	+	234	1	Intergenic	novelGene_31	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTTTGGTTTCTTAATG	1882	False	NA	NA	False	NA	NA	NA	33924354	33924588	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_33924400_33924600
ES_00003121	chr1	+	263	1	Intergenic	novelGene_36	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCCTGCACTCTTATAGA	NA	False	NA	NA	False	NA	NA	NA	36027792	36028055	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_36027800_36028100
ES_00003122	chr1	+	246	1	Intergenic	novelGene_38	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAATTAAAAAAAAA	4901	False	NA	70	True	NA	NA	NA	36707309	36707555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_36707300_36707600
ES_00003124	chr1	+	474	1	Intergenic	novelGene_46	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCACTGTAATTATAGCT	NA	False	NA	NA	False	NA	NA	NA	43928359	43928833	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_43928400_43928800
ES_00003126	chr1	+	1639	1	Intergenic	novelGene_51	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTTATTGTTGCGAC	NA	False	NA	NA	False	NA	NA	NA	44863658	44865297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_44863700_44865300
ES_00003127	chr1	+	1549	1	Intergenic	novelGene_53	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACCCTGTTTCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	45597055	45598604	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_45597100_45598600
ES_00003128	chr1	+	739	1	Intergenic	novelGene_55	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCCCCCGAGAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	45602572	45603311	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_45602600_45603300
ES_00003129	chr1	+	207	1	Intergenic	novelGene_56	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTATTTCTAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	45708118	45708325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_45708100_45708300
ES_00003130	chr1	+	238	1	Intergenic	novelGene_59	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTCTGCATACTATAC	999	False	NA	NA	False	NA	NA	NA	52152010	52152248	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_52152000_52152200
ES_00003131	chr1	+	217	1	Intergenic	novelGene_61	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATTGCGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	52624542	52624759	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_52624500_52624800
ES_00003132	chr1	+	204	1	Intergenic	novelGene_62	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGTGTCTTGAGTCACC	1941	False	NA	NA	False	NA	NA	NA	52639451	52639655	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_52639500_52639700
ES_00003133	chr1	+	207	1	Intergenic	novelGene_63	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACAGGTCATCAAACATCA	9841	False	NA	NA	False	AAAAAG	-6	NA	52949351	52949558	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_52949400_52949600
ES_00003135	chr1	+	655	1	Intergenic	novelGene_75	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACCTACAACCTTGGGAA	NA	False	NA	NA	False	NA	NA	NA	60828853	60829508	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_60828900_60829500
ES_00003137	chr1	+	200	1	Intergenic	novelGene_79	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGGACAGCATCAATCT	24	False	NA	NA	False	NA	NA	NA	63273240	63273440	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_63273200_63273400
ES_00003138	chr1	+	201	1	Intergenic	novelGene_82	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	580	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATTTCCCGCAACTAT	NA	False	NA	NA	False	NA	NA	NA	71744782	71744983	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_71744800_71745000
ES_00003139	chr1	+	213	1	Intergenic	novelGene_86	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTTGATATGCACTCAC	NA	False	NA	NA	False	NA	NA	NA	74749449	74749662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_74749400_74749700
ES_00003140	chr1	+	211	1	Intergenic	novelGene_88	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTATGTTTTATATAAA	NA	False	NA	NA	False	NA	NA	NA	75028080	75028291	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_75028100_75028300
ES_00003141	chr1	+	383	1	Intergenic	novelGene_91	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAACTCTCAGGGAGCT	NA	False	NA	NA	False	CATAAA	-18	NA	81719295	81719678	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_81719300_81719700
ES_00003142	chr1	+	411	1	Intergenic	novelGene_92	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGCATACCTTTACAAAG	NA	False	NA	NA	False	NA	NA	NA	83822143	83822554	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_83822100_83822600
ES_00003144	chr1	+	312	1	Intergenic	novelGene_99	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGTGACTTTTTTTGACT	565	False	NA	NA	False	NA	NA	NA	87470884	87471196	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_87470900_87471200
ES_00003145	chr1	+	1069	1	Intergenic	novelGene_102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTTATACAGACTGGA	NA	False	NA	NA	False	NA	NA	NA	89028062	89029131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_89028100_89029100
ES_00003146	chr1	+	207	1	Intergenic	novelGene_103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTTTGTTACACATCAT	NA	False	NA	NA	False	NA	NA	NA	89831391	89831598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_89831400_89831600
ES_00003147	chr1	+	227	1	Intergenic	novelGene_104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTCTTTTTCCTTT	NA	False	NA	45	True	NA	NA	NA	89843856	89844083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_89843900_89844100
ES_00003148	chr1	+	252	1	Intergenic	novelGene_108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCCTACCACTGTGG	NA	False	NA	NA	False	NA	NA	NA	90553019	90553271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_90553000_90553300
ES_00003149	chr1	+	204	1	Intergenic	novelGene_110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATTATTTTCAAAAGCT	1993	False	NA	NA	False	NA	NA	NA	93813820	93814024	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_93813800_93814000
ES_00003150	chr1	+	1006	1	Intergenic	novelGene_115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAATCAAAACCCTCATT	NA	False	NA	NA	False	CATAAA	-35	NA	95758450	95759456	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_95758400_95759500
ES_00003152	chr1	+	227	1	Intergenic	novelGene_117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	808	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAAAATGGCAGTGCCT	NA	False	NA	NA	False	NA	NA	NA	98705094	98705321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_98705100_98705300
ES_00003155	chr1	+	323	1	Intergenic	novelGene_126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATAGAAAGTCACCCTG	NA	False	NA	NA	False	NA	NA	NA	112153125	112153448	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_112153100_112153400
ES_00003156	chr1	+	219	1	Intergenic	novelGene_127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAATGTTTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	114151028	114151247	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_114151000_114151200
ES_00003157	chr1	+	216	1	Intergenic	novelGene_131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATCTATCAAAACAGACT	NA	False	NA	NA	False	NA	NA	NA	119738259	119738475	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_119738300_119738500
ES_00003158	chr1	+	738	1	Intergenic	novelGene_133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACACGGATCTATTAATCA	NA	False	NA	NA	False	AATAAA	-41	NA	122802996	122803734	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_122803000_122803700
ES_00003159	chr1	+	201	1	Intergenic	novelGene_138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGAAGAAGAGGAATCTG	NA	False	NA	NA	False	NA	NA	NA	132100855	132101056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_132100900_132101100
ES_00003161	chr1	+	367	1	Intergenic	novelGene_147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTCACCAGCCCAAAAGG	NA	False	NA	NA	False	NA	NA	NA	135281030	135281397	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_135281000_135281400
ES_00003162	chr1	+	245	1	Intergenic	novelGene_151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAGATTTTATTAATA	NA	False	NA	NA	False	AATAAA	-18	NA	136376019	136376264	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136376000_136376300
ES_00003163	chr1	+	202	1	Intergenic	novelGene_152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACGTCCCATTTTCATC	NA	False	NA	NA	False	NA	NA	NA	136509449	136509651	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136509400_136509700
ES_00003164	chr1	+	234	1	Intergenic	novelGene_153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACAATTTCTTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	136562607	136562841	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136562600_136562800
ES_00003165	chr1	+	203	1	Intergenic	novelGene_155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTCTGTGGCTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	136617182	136617385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_136617200_136617400
ES_00003166	chr1	+	234	1	Intergenic	novelGene_157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	138907458	138907692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_138907500_138907700
ES_00003167	chr1	+	213	1	Intergenic	novelGene_158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAACACTTTAATAAGGT	3298	False	NA	NA	False	NA	NA	NA	139271585	139271798	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_139271600_139271800
ES_00003169	chr1	+	226	1	Intergenic	novelGene_160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCATACTTTACCTCAAA	NA	False	NA	NA	False	AATAAA	-35	NA	150075316	150075542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_150075300_150075500
ES_00003170	chr1	+	211	1	Intergenic	novelGene_163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGGGTCACAGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	153372938	153373149	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_153372900_153373100
ES_00003171	chr1	+	200	1	Intergenic	novelGene_177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTCCCATCTTAACAC	NA	False	NA	NA	False	NA	NA	NA	156425049	156425249	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_156425000_156425200
ES_00003172	chr1	+	202	1	Intergenic	novelGene_184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAATGACCACAGTAATCA	NA	False	NA	NA	False	NA	NA	NA	161908750	161908952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_161908800_161909000
ES_00003173	chr1	+	222	1	Intergenic	novelGene_186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGGTTTCTTAATCCAT	NA	False	NA	NA	False	NA	NA	NA	163852432	163852654	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_163852400_163852700
ES_00003174	chr1	+	228	1	Intergenic	novelGene_190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTTGTTTTAAGGCTC	NA	False	NA	NA	False	NA	NA	NA	165996102	165996330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_165996100_165996300
ES_00003175	chr1	+	270	1	Intergenic	novelGene_195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCACACCAACCTCACCA	8629	False	NA	NA	False	NA	NA	NA	170698640	170698910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_170698600_170698900
ES_00003176	chr1	+	201	1	Intergenic	novelGene_199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGGAGGTAGAGAATTT	NA	False	NA	NA	False	NA	NA	NA	171089368	171089569	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171089400_171089600
ES_00003177	chr1	+	202	1	Intergenic	novelGene_200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAGAGAGGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	171095768	171095970	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171095800_171096000
ES_00003179	chr1	+	523	1	Intergenic	novelGene_206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTTCTTTTGAACACAG	7356	False	NA	NA	False	NA	NA	NA	171689440	171689963	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171689400_171690000
ES_00003180	chr1	+	205	1	Intergenic	novelGene_207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAACATTTTAACCTCT	951	False	NA	NA	False	NA	NA	NA	171865552	171865757	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171865600_171865800
ES_00003181	chr1	+	216	1	Intergenic	novelGene_219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTCTCCTCTTGTCAGG	3185	False	NA	NA	False	NA	NA	NA	180753104	180753320	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_180753100_180753300
ES_00003182	chr1	+	239	1	Intergenic	novelGene_230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCCTCATTGGACTGCA	NA	False	NA	NA	False	NA	NA	NA	191083500	191083739	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_191083500_191083700
ES_00003183	chr1	+	1051	7	FSM	ENSMUSG00000025903.15	ENSMUST00000137887.8	444	7	-290	-317	-180	0	multi-exon	FALSE	canonical	2	4	junction_3	300.297861390246	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAAATCTGATCGCC	NA	False	NA	NA	False	AATAAA	-34	NA	4877830	4911509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4902533_4902605_4907223_4907298_4909609_4909712_4911178
ES_00003185	chr1	+	5275	24	NIC	ENSMUSG00000025907.15	novel	7607	24	NA	NA	2	-144	intron_retention	FALSE	canonical	3	11	junction_22	35.7659901183979	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGGCCATTGTTGGGT	NA	False	NA	5	True	GATAAA	-12	NA	6284888	6344569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499_6320392_6331153_6331320_6333057_6333167_6333247_6333489_6334765_6334815_6335797_6335846_6338921_6338981_6340914_6341043_6342924_6342996_6344421
ES_00003186	chr1	+	722	2	FSM	ENSMUSG00000102135.2	ENSMUST00000194605.2	626	2	-45	-51	-45	51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCAGGTGACAGCAGAT	NA	False	NA	NA	False	AATAAA	-30	NA	6986737	6993863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_6987220_6993623
ES_00003187	chr1	+	1991	1	FSM	ENSMUSG00000103509.2	ENSMUST00000194854.2	4028	1	668	1369	668	-1369	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTGAGCCATCTCACTA	NA	False	NA	NA	False	NA	NA	NA	7219001	7220992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_7219000_7221000
ES_00003189	chr1	+	675	1	FSM	ENSMUSG00000056763.17	ENSMUST00000190610.2	1356	1	-317	998	-317	-998	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTATCTCCGGATTATT	NA	False	NA	26	True	AATAAA	-39	NA	10107894	10108569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_10107900_10108600
ES_00003190	chr1	+	4378	29	NIC	ENSMUSG00000056763.17	novel	4355	30	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	36.4794287851358	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	4	True	AATAAA	-17	NA	10108212	10206993	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ES_00003191	chr1	+	4327	30	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	28	junction_1	29.4810041825238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	4	True	AATAAA	-17	NA	10110012	10206993	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_10110113_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ES_00003192	chr1	+	2326	18	NIC	ENSMUSG00000056763.17	novel	2535	8	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	2	91	junction_2	25.6351834352279	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTGTACTAATTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	10110014	10178778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593
ES_00003194	chr1	+	10877	40	FSM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	176	0	123	0	multi-exon	TRUE	canonical	1	6	junction_1	5.99769844088307	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTAAGTTTGACTAATTC	NA	False	NA	NA	False	AATAAA	-16	NA	11063864	11373905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_11064134_11131549_11131622_11136017_11136141_11138234_11138340_11150246_11150349_11159940_11160103_11168686_11168821_11171287_11171392_11177826_11177977_11180505_11180651_11182966_11183068_11193344_11193449_11194037_11194088_11202561_11202638_11206988_11207062_11210179_11210323_11210459_11210553_11212872_11213022_11220033_11220120_11223766_11223904_11226464_11226583_11230319_11230505_11232463_11232626_11240076_11240300_11240807_11241016_11252078_11252259_11254669_11254765_11255353_11255437_11256110_11256202_11256860_11256990_11263736_11263779_11270058_11270277_11274289_11274393_11278735_11278880_11301905_11302021_11335902_11335970_11336192_11336384_11355280_11355384_11359476_11359545_11367931
ES_00003198	chr1	+	2276	1	FSM	ENSMUSG00000104379.2	ENSMUST00000194867.2	3169	1	921	-28	921	28	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGCATTAGAACCATATAA	NA	False	NA	NA	False	NA	NA	NA	15924475	15926751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_15924500_15926800
ES_00003199	chr1	+	485	1	FSM	ENSMUSG00000102633.2	ENSMUST00000191648.2	2100	1	1426	189	1426	-189	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTTACAGATGGCCGAG	NA	False	NA	NA	False	AAAACA	-8	NA	21306371	21306856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_21306400_21306900
ES_00003200	chr1	+	735	8	FSM	ENSMUSG00000025934.16	ENSMUST00000124990.3	742	8	7	0	7	0	multi-exon	FALSE	canonical	0	0	junction_1	35.0049559173485	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAGCAGAGTCAGCAAC	NA	False	NA	NA	False	NA	NA	NA	21310859	21335070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_21310884_21319974_21320083_21324907_21325048_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ES_00003201	chr1	+	224	2	Intergenic	novelGene_28	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAACTACACTCTATA	NA	False	NA	NA	False	TTTAAA	-10	NA	28415071	28488247	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_28415130_28488081
ES_00003204	chr1	+	17672	93	NIC	ENSMUSG00000026131.21	novel	23201	103	NA	NA	11	4	combination_of_known_junctions	FALSE	canonical	2	6	junction_17	45.4245294755139	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATACTTGGTTATTTGA	NA	False	NA	19	True	AATAAA	-20	NA	34045271	34347737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_34045480_34125322_34125385_34153013_34153104_34155198_34155277_34156512_34156606_34174170_34174338_34191282_34191396_34191493_34191601_34193593_34193714_34195679_34195776_34195861_34195990_34199700_34199795_34200084_34200240_34202089_34202553_34202706_34202836_34202977_34203056_34203156_34203319_34203407_34203513_34204138_34204235_34205260_34205387_34206019_34206173_34206356_34206512_34206691_34206819_34206903_34207088_34208244_34208403_34208830_34209010_34209440_34209580_34210196_34210391_34211263_34211427_34212082_34212167_34213195_34213304_34213777_34213877_34223096_34223226_34225042_34225132_34225899_34226033_34236281_34236435_34237598_34237833_34238372_34238640_34239950_34240497_34241525_34241703_34247634_34247759_34250234_34250444_34251302_34251621_34251982_34252150_34253614_34253772_34254566_34254694_34256890_34256954_34257415_34257658_34258476_34258607_34262884_34263085_34264589_34265086_34266855_34268328_34281699_34281862_34283424_34283596_34286729_34286897_34288559_34288720_34288884_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ES_00003205	chr1	+	17502	93	NIC	ENSMUSG00000026131.21	novel	23279	98	NA	NA	53	4	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	45.5126478089993	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATACTTGGTTATTTGA	NA	False	NA	19	True	AATAAA	-20	NA	34050958	34347737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_34050997_34125322_34125385_34153013_34153104_34155198_34155277_34156512_34156606_34174170_34174338_34191282_34191396_34191493_34191601_34193593_34193714_34195679_34195776_34195861_34195990_34199700_34199795_34200084_34200240_34202089_34202553_34202706_34202836_34202977_34203056_34203156_34203319_34203407_34203513_34204138_34204235_34205260_34205387_34206019_34206173_34206356_34206512_34206691_34206819_34206903_34207088_34208244_34208403_34208830_34209010_34209440_34209580_34210196_34210391_34211263_34211427_34212082_34212167_34213195_34213304_34213777_34213877_34223096_34223226_34225042_34225132_34225899_34226033_34236281_34236435_34237598_34237833_34238372_34238640_34239950_34240497_34241525_34241703_34247634_34247759_34250234_34250444_34251302_34251621_34251982_34252150_34253614_34253772_34254566_34254694_34256890_34256954_34257415_34257658_34258476_34258607_34262884_34263085_34264589_34265086_34266855_34268328_34281699_34281862_34283424_34283596_34286729_34286897_34288559_34288720_34288884_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ES_00003206	chr1	+	225	1	FSM	ENSMUSG00000103364.2	ENSMUST00000194178.2	1698	1	292	1181	292	-1181	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACCAAAAAAA	2887	False	NA	NA	False	NA	NA	NA	34071472	34071697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_34071500_34071700
ES_00003208	chr1	+	222	1	Intergenic	novelGene_37	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTTAACAAAGCAT	NA	False	NA	NA	False	AAAAAG	-16	NA	36090761	36090983	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_36090800_36091000
ES_00003209	chr1	+	317	1	FSM	ENSMUSG00000045216.8	ENSMUST00000194670.2	3291	1	38	2936	38	-2936	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCATCTGACACTGTCTT	8790	False	NA	NA	False	NA	NA	NA	36140808	36141125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36140800_36141100
ES_00003211	chr1	+	5292	9	FSM	ENSMUSG00000001138.14	ENSMUST00000097776.4	5292	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	33.4680351230842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCATTGTACTTTTACC	NA	False	NA	NA	False	ATTAAA	-16	NA	36550947	36567318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36552235_36558032_36558177_36559158_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36563114_36563214_36564246
ES_00003212	chr1	+	5309	8	NNC	ENSMUSG00000001138.14	novel	5193	8	NA	NA	0	119	intron_retention	FALSE	canonical	3	13	junction_2	25.5957585772107	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTGTATGTGTGT	NA	False	NA	NA	False	TTTAAA	-17	NA	36550947	36567437	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_36552235_36558032_36558177_36559161_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36564246
ES_00003213	chr1	+	362	1	FSM	ENSMUSG00000089906.2	ENSMUST00000161062.2	345	1	-17	0	-17	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTGTGGCTCTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	36640865	36641227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36640900_36641200
ES_00003214	chr1	+	382	2	FSM	ENSMUSG00000026117.11	ENSMUST00000186624.2	808	2	0	426	0	-426	multi-exon	FALSE	canonical	1	6	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGGGGCATGGGAGTG	NA	False	NA	NA	False	NA	NA	NA	36810072	36811030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_36810294_36810869
ES_00003216	chr1	+	203	2	Antisense	novelGene_ENSMUSG00000026116.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	330	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAATAAAAATGGTGAAAAG	NA	False	NA	NA	False	NA	NA	NA	36869481	36892447	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_+_36869533_36892295
ES_00003217	chr1	+	2443	14	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	15432	46273	9057	-4	internal_fragment	TRUE	canonical	3	11	junction_5	16.9024349634101	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTTGCAGATTTCTCC	NA	False	NA	1	True	AATAAA	-18	NA	37083845	37180413	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_37084290_37090797_37090961_37099410_37099581_37102514_37102631_37124313_37124440_37139716_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ES_00003218	chr1	+	520	2	NNC	ENSMUSG00000050122.20	novel	1252	7	NA	NA	9160	-16023	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAATAGTACACAACTG	NA	False	NA	NA	False	NA	NA	NA	37083948	37086707	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_37084290_37086528
ES_00003220	chr1	+	1231	6	FSM	ENSMUSG00000026111.16	ENSMUST00000118059.3	1179	6	-50	-2	13	2	multi-exon	FALSE	canonical	2	11	junction_1	196.480635178126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTTTATTTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	37469232	37478070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_37469509_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ES_00003221	chr1	+	944	3	FSM	ENSMUSG00000026078.11	ENSMUST00000193073.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	3	894	junction_1	18	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACAGTGCAAAAAATGAGA	NA	False	NA	NA	False	AATAAA	-26	NA	39034240	39035727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_39034470_39034815_39035025_39035221
ES_00003222	chr1	+	5890	31	NIC	ENSMUSG00000026074.16	novel	3960	32	NA	NA	-115	2	combination_of_known_junctions	FALSE	canonical	3	13	junction_15	28.6189719514094	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCATGGTCATCACTACA	NA	False	NA	NA	False	AATAAA	-25	NA	39939957	40065472	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40040589_40040752_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00003223	chr1	+	5955	31	NIC	ENSMUSG00000026074.16	novel	4082	31	NA	NA	-65	-3	combination_of_known_junctions	FALSE	canonical	3	22	junction_17	28.0042853863476	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTTCATGGTCATCA	NA	False	NA	NA	False	AATAAA	-20	NA	39940007	40065467	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40042916_40043148_40043966_40044074_40045833_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00003225	chr1	+	3654	16	NIC	ENSMUSG00000026074.16	novel	4082	31	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	34.9949837675186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTTCATGGTCATCA	NA	False	NA	NA	False	AATAAA	-20	NA	40039058	40065467	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_40039135_40039783_40039910_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ES_00003227	chr1	+	209	2	Intergenic	novelGene_45	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGTTTTCCTTAAAGCT	NA	False	NA	NA	False	NA	NA	NA	43874873	43881135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_43874902_43880954
ES_00003228	chr1	+	517	3	FSM	ENSMUSG00000026048.17	ENSMUST00000145406.2	494	3	-23	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	43.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGGCAAGAGGAAGACCAC	NA	False	NA	NA	False	NA	NA	NA	44187068	44197415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_44187298_44196096_44196273_44197303
ES_00003229	chr1	+	2882	10	FSM	ENSMUSG00000056870.10	ENSMUST00000159555.8	2882	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.66851826138829	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATTAAACTGTATGA	NA	False	NA	NA	False	AATAAA	-8	NA	44590852	44835986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_44591033_44728303_44728376_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
ES_00003231	chr1	+	1953	2	FSM	ENSMUSG00000101262.2	ENSMUST00000188705.2	1953	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGTCCAAGAAGAGGATG	NA	False	NA	NA	False	NA	NA	NA	46453661	46456092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_46453962_46454439
ES_00003232	chr1	+	4160	25	FSM	ENSMUSG00000026104.15	ENSMUST00000186857.7	4241	25	0	81	0	-81	multi-exon	FALSE	canonical	3	7	junction_1	8.12649558884736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTATGAGTTGGTTTAAT	3300	False	NA	NA	False	TATAAA	-18	NA	52158650	52200085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_52158768_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ES_00003233	chr1	+	291	3	FSM	ENSMUSG00000041426.13	ENSMUST00000161552.2	293	3	2	0	2	0	multi-exon	FALSE	canonical	2	3	junction_1	50.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGATCTATCCACAGCTAA	NA	False	NA	NA	False	NA	NA	NA	52890928	52899302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_52891061_52892826_52892870_52899186
ES_00003234	chr1	+	1608	7	FSM	ENSMUSG00000026096.15	ENSMUST00000151296.8	1592	7	-16	0	14	0	multi-exon	FALSE	canonical	3	11	junction_5	65.9858991670864	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCGTGTTTCAAGTGTTT	NA	False	NA	18	True	AATAAA	-38	NA	53352796	53365333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53362325_53362430_53365162
ES_00003235	chr1	+	404	1	FSM	ENSMUSG00000025981.14	ENSMUST00000185474.2	1225	1	222	599	222	-599	mono-exon	FALSE	NA	NA	NA	NA	NA	682	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTACAATGCAGTTTT	3880	False	NA	NA	False	NA	NA	NA	55092249	55092653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_55092200_55092700
ES_00003236	chr1	+	964	2	FSM	ENSMUSG00000073676.5	ENSMUST00000134628.2	964	2	0	0	0	0	multi-exon	FALSE	canonical	3	8585	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAATAAGGCACAGAACT	NA	False	NA	NA	False	GATAAA	-35	NA	55127472	55129074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_55127572_55128209
ES_00003238	chr1	+	1239	2	FSM	ENSMUSG00000087022.5	ENSMUST00000135238.4	1300	2	61	0	-5	0	multi-exon	FALSE	canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTTTGGTTTCATTT	NA	False	NA	NA	False	AATAAA	-21	NA	57010631	57014356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_57010931_57013416
ES_00003239	chr1	+	2438	14	NNC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	17.7484060456077	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCTTTCTA	NA	False	NA	NA	False	ATTAAA	-16	NA	57814075	57986124	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982393_57985224
ES_00003240	chr1	+	4574	36	NNC	ENSMUSG00000064294.13	novel	4606	35	NA	NA	-138	-37	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.84409305900735	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAGAGAAACTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	58152150	58239820	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_58152180_58152318_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
ES_00003241	chr1	+	2196	1	ISM	ENSMUSG00000026031.16	ENSMUST00000114313.8	6572	10	45128	1	26136	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTCTGATGTCTTTGATA	145	False	NA	NA	False	ATTAAA	-17	NA	58795846	58798042	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_58795800_58798000
ES_00003242	chr1	+	224	1	FSM	ENSMUSG00000102719.2	ENSMUST00000194726.2	3841	1	3096	521	3096	-521	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCTCTTTGGAATTTAT	8429	False	NA	NA	False	NA	NA	NA	58840037	58840261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_58840000_58840300
ES_00003243	chr1	+	853	5	FSM	ENSMUSG00000047361.17	ENSMUST00000190490.2	933	5	0	80	0	-80	multi-exon	FALSE	canonical	3	7	junction_3	3.04138126514911	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTTACCCTGGAACCTC	NA	False	NA	NA	False	NA	NA	NA	59669481	59675496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_59669486_59671372_59671576_59672305_59672479_59673152_59673373_59675243
ES_00003244	chr1	+	15816	56	NIC	ENSMUSG00000073664.12	novel	15731	55	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_10	6.04293180446283	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTGTAGTTCTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	60219759	60377487	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263_60239346_60240022_60240151_60245492_60245576_60256354_60256441_60261225_60261533_60263783_60263891_60267780_60267868_60269760_60269845_60273955_60274055_60274139_60274721_60275529_60275663_60276255_60276376_60277730_60278035_60281697_60281784_60283952_60284043_60286774_60286944_60287521_60287656_60290193_60290354_60290462_60290566_60292510_60292668_60294052_60294212_60296588_60296749_60297808_60297898_60299391_60299953_60300568_60300745_60303437_60303592_60304040_60304170_60306917_60307224_60307541_60307692_60309430_60309589_60311291_60311417_60316283_60316411_60317071_60317221_60317825_60317960_60318857_60318960_60320405_60320502_60320983_60321109_60323141_60323283_60326469_60326601_60329073_60329184_60330992_60331111_60332025_60332124_60335037_60335155_60344433_60344524_60349362_60349473_60350085_60350259_60351309_60351405_60358475_60358593_60358829_60358992_60367218_60367368_60368485_60368622_60370049
ES_00003247	chr1	+	6705	16	FSM	ENSMUSG00000025969.16	ENSMUST00000102822.9	6708	16	0	3	0	-3	multi-exon	FALSE	canonical	1	2	junction_15	5.51925920955179	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCCTACATTGTCTTTC	4008	False	NA	NA	False	AATAAA	-17	NA	62742443	62857851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62854491
ES_00003248	chr1	+	6510	16	FSM	ENSMUSG00000025969.16	ENSMUST00000114155.8	6534	16	0	24	0	-24	multi-exon	FALSE	canonical	2	3	junction_2	5.28898225874632	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGACGATATTTTTATA	4425	False	NA	NA	False	NA	NA	NA	62742860	62838449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62834867
ES_00003250	chr1	+	10557	1	FSM	ENSMUSG00000101599.2	ENSMUST00000185480.2	9720	1	-2675	1838	-2675	-1838	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGGCCTCGAACTCAGA	NA	False	NA	NA	False	NA	NA	NA	63153601	63164158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_63153600_63164200
ES_00003251	chr1	+	12673	6	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-29	0	multi-exon	FALSE	canonical	0	0	junction_4	15.2525407719501	51	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGTGTTTGTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	63239442	63353734	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63319988_63334074_63334206_63341798
ES_00003254	chr1	+	3298	9	NIC	ENSMUSG00000070871.11	novel	2923	10	NA	NA	112	0	intron_retention	FALSE	canonical	0	0	junction_4	37.499791666088	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGGCGAGTGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	64730092	64764799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_64730560_64740127_64740203_64741504_64741540_64747536_64747638_64752269_64752322_64753727_64753848_64757289_64757457_64760785_64760949_64762681
ES_00003255	chr1	+	324	1	FSM	ENSMUSG00000090042.2	ENSMUST00000161621.2	653	1	470	-141	470	141	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAGAACAGATGCTACA	5702	False	NA	NA	False	NA	NA	NA	65067708	65068032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_65067700_65068000
ES_00003256	chr1	+	11303	41	NIC	ENSMUSG00000025949.17	novel	11237	42	NA	NA	-31	49	combination_of_known_junctions	FALSE	canonical	3	18	junction_11	18.0099972237644	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTTGATCAAATCTATC	NA	False	NA	NA	False	NA	NA	NA	65225810	65317903	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ES_00003257	chr1	+	1811	10	FSM	ENSMUSG00000025949.17	ENSMUST00000213081.2	1790	10	-21	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	48.0912199065356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	65225841	65248558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_65225993_65229477_65229659_65231303_65231454_65231689_65231726_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65247642_65247730_65247941
ES_00003258	chr1	+	345	1	FSM	ENSMUSG00000082774.2	ENSMUST00000117848.2	313	1	9	-41	9	41	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAGAGAGAGGGA	NA	False	NA	NA	False	GATAAA	-36	NA	65591849	65592194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_65591800_65592200
ES_00003260	chr1	+	2724	7	FSM	ENSMUSG00000026005.16	ENSMUST00000142920.8	2724	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	377.976373453274	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_66740188_66740775_66740808_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ES_00003261	chr1	+	357	1	FSM	ENSMUSG00000101387.2	ENSMUST00000187740.2	751	1	-134	528	-134	-528	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCGGGCGCCACTTGAT	NA	False	NA	NA	False	NA	NA	NA	69416345	69416702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_69416300_69416700
ES_00003262	chr1	+	2773	1	FSM	ENSMUSG00000026192.14	ENSMUST00000187982.2	2773	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAGGGAAAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	71596337	71599110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_71596300_71599100
ES_00003263	chr1	+	612	3	FSM	ENSMUSG00000073652.11	ENSMUST00000125934.2	430	3	-182	0	-178	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	1669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTTCTGTTGGCAAT	NA	False	NA	NA	False	TTTAAA	-4	NA	71692315	71696404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_71692546_71693476_71693658_71696203
ES_00003264	chr1	+	549	1	FSM	ENSMUSG00000085812.2	ENSMUST00000146593.2	529	1	-20	0	-20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCAGATAAAGTTTAAAAA	NA	False	NA	NA	False	AAGAAA	-40	NA	72498637	72499186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_72498600_72499200
ES_00003265	chr1	+	2994	17	FSM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.2319706671913	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622773	72672293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_72622897_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ES_00003266	chr1	+	1639	3	ISM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	196	0	0	intron_retention	FALSE	canonical	2	9164	junction_1	3263	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	False	NA	-2	True	AATAAA	-15	NA	72750448	72752776	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_72750483_72750830_72750960_72751300
ES_00003267	chr1	+	416	2	FSM	ENSMUSG00000026179.15	ENSMUST00000152492.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGACCTGAGTGAGGATC	NA	False	NA	NA	False	NA	NA	NA	74324935	74326432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74325170_74326250
ES_00003268	chr1	+	2200	14	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	507	4	138	-4	3prime_fragment	FALSE	canonical	2	4	junction_8	14.2151681635203	552	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCTTAAAGAGTTCTAG	5478	False	NA	NA	False	NA	NA	NA	74414868	74425217	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ES_00003269	chr1	+	244	2	Antisense	novelGene_ENSMUSG00000033364.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCTTTTAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	74570244	74571946	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_+_74570293_74571750
ES_00003270	chr1	+	200	2	Antisense	novelGene_ENSMUSG00000026171.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	51	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGACTCATCGTCACTG	6033	False	NA	NA	False	NA	NA	NA	74632349	74635552	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_+_74632406_74635408
ES_00003271	chr1	+	5247	27	NIC	ENSMUSG00000033276.19	novel	5245	27	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	4.85713042611904	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTGTGATTATCTGTA	NA	False	NA	NA	False	ATTAAA	-18	NA	74640595	74676053	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_74640773_74641187_74641361_74642296_74642438_74642555_74642634_74644547_74644679_74648170_74648421_74649930_74650025_74650247_74650418_74650559_74650748_74651844_74651945_74655734_74655879_74661354_74661535_74662443_74662542_74662988_74663095_74664651_74664803_74665171_74665300_74665701_74665807_74666553_74666653_74666743_74666833_74667076_74667141_74667300_74667412_74670744_74670820_74671887_74672060_74672300_74672449_74672665_74672814_74673168_74673916_74674873
ES_00003272	chr1	+	2674	1	FSM	ENSMUSG00000090071.5	ENSMUST00000160379.4	2799	1	-9	134	-9	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTGAGGCTGAACTTACC	8310	False	NA	NA	False	AGTAAA	-15	NA	74894083	74896757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_74894100_74896800
ES_00003273	chr1	+	1074	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	55.5417760689095	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTATGAGTGCTGTTTC	2054	False	NA	10	True	AGTAAA	-16	NA	75145311	75148267	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ES_00003274	chr1	+	1097	4	ISM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	71	0	71	0	intron_retention	FALSE	canonical	3	96	junction_1	11.0855260988773	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	147	False	NA	NA	False	NA	NA	NA	75168906	75172178	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706
ES_00003275	chr1	+	1274	5	ISM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	5380	1	1847	-1	3prime_fragment	FALSE	canonical	3	111	junction_2	12.737739202857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTGTGTACTTACAGT	5424	False	NA	18	True	AATAAA	-14	NA	75174183	75176030	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ES_00003276	chr1	+	1480	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187485	75190886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ES_00003277	chr1	+	755	3	ISM	ENSMUSG00000026201.13	ENSMUST00000189698.7	851	6	-184	1013	0	-19	5prime_fragment	FALSE	canonical	3	17	junction_1	122.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAACATTCTAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	75187513	75188859	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_75187803_75187883_75188059_75188568
ES_00003281	chr1	+	665	5	FSM	ENSMUSG00000033021.17	ENSMUST00000145166.8	647	5	-18	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	92.997311789105	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGGCCTCTACCATTTT	NA	False	NA	NA	False	GGGGCT	-44	NA	75412586	75415517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485
ES_00003285	chr1	+	1199	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	510	140	510	-140	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCACAGGGGAAGTGGAT	NA	False	NA	NA	False	NA	NA	NA	77492426	77493625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_77492400_77493600
ES_00003287	chr1	+	217	2	Intergenic	novelGene_90	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAATTCTAAGAAGGGGC	NA	False	NA	NA	False	NA	NA	NA	80387407	80413641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_80387443_80413459
ES_00003292	chr1	+	2049	7	NNC	ENSMUSG00000026223.16	novel	2230	6	NA	NA	-55	95858	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	81.2116576196628	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCCTGCACCATGCCTG	NA	False	NA	NA	False	NA	NA	NA	85822284	85932254	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267_85836400_85932155
ES_00003293	chr1	+	367	1	FSM	ENSMUSG00000079445.4	ENSMUST00000189618.2	1876	1	356	1153	-46	-1153	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTCGGGGTCCCGGTGG	NA	False	NA	NA	False	NA	NA	NA	86230909	86231276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86230900_86231300
ES_00003294	chr1	+	489	1	FSM	ENSMUSG00000073627.8	ENSMUST00000190804.2	3185	1	-98	2794	-84	-2794	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCATGTAATGTCGGTGA	NA	False	NA	NA	False	AATAAA	-41	NA	86287211	86287700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86287200_86287700
ES_00003296	chr1	+	2222	8	NNC	ENSMUSG00000026240.13	novel	2231	7	NA	NA	-815	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	127.599500990643	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTAGGTGTGGAGGATT	9388	False	NA	93	True	NA	NA	NA	86514006	86534048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_86514088_86514737_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ES_00003297	chr1	+	1950	6	FSM	ENSMUSG00000026240.13	ENSMUST00000138280.8	1950	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	149.075819635513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTAGGTGTGGAGGATT	NA	False	NA	93	True	NA	NA	NA	86514852	86534048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86514958_86516885_86517064_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ES_00003298	chr1	+	1172	4	FSM	ENSMUSG00000053333.16	ENSMUST00000188121.7	1173	4	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_3	49.2769948578667	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTACTTTTCTTTATAAC	NA	False	NA	NA	False	AATAAA	-14	NA	86631529	86676052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86675250
ES_00003299	chr1	+	2728	21	FSM	ENSMUSG00000053333.16	ENSMUST00000190618.7	2969	21	-20	261	0	-261	multi-exon	TRUE	canonical	0	0	junction_5	30.1544358262595	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTCCCCTGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	86631529	86976656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86740233_86740312_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554
ES_00003300	chr1	+	527	1	FSM	ENSMUSG00000104121.2	ENSMUST00000192326.2	2953	1	1098	1328	1098	-1328	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCTGAGTCCAAAATTATA	NA	False	NA	NA	False	ATTAAA	-38	NA	86729894	86730421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86729900_86730400
ES_00003301	chr1	+	1051	1	FSM	ENSMUSG00000102649.2	ENSMUST00000195687.2	1560	1	-336	845	-336	-845	mono-exon	FALSE	NA	NA	NA	NA	NA	1247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGGAAGTACCCTGTTC	NA	False	NA	NA	False	AATACA	-17	NA	86820958	86822009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_86821000_86822000
ES_00003302	chr1	+	218	2	Genic_Genomic	ENSMUSG00000102956.2	novel	747	1	NA	NA	103	36682	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATACTCTTTCAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	86916094	86953420	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_86916123_86953230
ES_00003303	chr1	+	5702	29	NNC	ENSMUSG00000048000.16	novel	5724	29	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	37.4795692643992	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGGTCTCTCTGAG	NA	False	NA	7	True	AATAAA	-17	NA	87254761	87378518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_87254830_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ES_00003306	chr1	+	3899	28	FSM	ENSMUSG00000026288.15	ENSMUST00000168783.8	3854	28	-45	0	-2	0	multi-exon	FALSE	canonical	1	2	junction_3	195.454315825361	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACAGTCAGGTGCCATG	NA	False	NA	2	True	NA	NA	NA	87548075	87647416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87548354_87563013_87563078_87593108_87593260_87595610_87595786_87597363_87597505_87604004_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
ES_00003307	chr1	+	4895	27	FSM	ENSMUSG00000026288.15	ENSMUST00000169754.8	4937	27	42	0	-2	0	multi-exon	FALSE	canonical	1	2	junction_3	193.725271374776	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCTGACTGTGTGGTAT	NA	False	NA	19	True	AATAAA	-20	NA	87548075	87648229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87548354_87563013_87563078_87593108_87593260_87595610_87595786_87597363_87597505_87604004_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ES_00003309	chr1	+	257	3	FSM	ENSMUSG00000056055.14	ENSMUST00000136708.2	857	3	600	0	600	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAACACCGACAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	87749028	87752191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87749106_87751038_87751175_87752147
ES_00003310	chr1	+	218	2	Genic_Genomic	ENSMUSG00000103996.2	novel	844	1	NA	NA	-16	36266	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGTACTTTTGAGACC	8224	False	NA	NA	False	NA	NA	NA	87792778	87829904	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_+_87792806_87829713
ES_00003311	chr1	+	657	3	FSM	ENSMUSG00000070738.11	ENSMUST00000191589.2	659	3	0	2	0	-2	multi-exon	FALSE	canonical	3	273	junction_2	20	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCTTCCTGTGTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	87845619	87849691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_87845717_87846280_87846444_87849294
ES_00003312	chr1	+	2284	6	FSM	ENSMUSG00000054545.18	ENSMUST00000113134.8	2297	6	4	9	0	-9	multi-exon	FALSE	canonical	0	0	junction_1	0.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTGTATCACTACTCT	7018	False	NA	NA	False	AATAAA	-6	NA	88062534	88146710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_88062658_88066194_88067054_88142765_88142898_88143516_88143605_88143859_88144080_88145848
ES_00003313	chr1	+	2302	6	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-78	9685	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	8.5463442476886	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGCTTCGAGTGACAATG	NA	False	NA	5	True	ATTAAA	-19	NA	88387326	88402965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_88388039_88390701_88390815_88393237_88393528_88397558_88397777_88398642_88398830_88402183
ES_00003314	chr1	+	1607	3	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-4	9685	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	9	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGCTTCGAGTGACAATG	NA	False	NA	5	True	ATTAAA	-19	NA	88387400	88402965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_88388039_88398642_88398830_88402183
ES_00003315	chr1	+	475	3	FSM	ENSMUSG00000097398.3	ENSMUST00000181016.3	479	3	4	0	4	0	multi-exon	FALSE	canonical	3	8	junction_1	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682615	88683458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_88682681_88682805_88683013_88683255
ES_00003316	chr1	+	358	3	FSM	ENSMUSG00000097398.3	ENSMUST00000180596.2	358	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTAAAGTTGAACCTT	NA	False	NA	-10	True	NA	NA	NA	88682675	88683431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_88682774_88682928_88683013_88683255
ES_00003317	chr1	+	1025	3	Intergenic	novelGene_101	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	4	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCAACTTGCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88698196	88699471	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_88698328_88698411_88698634_88698799
ES_00003318	chr1	+	3852	19	NIC	ENSMUSG00000055013.17	novel	11921	18	NA	NA	65	-16	combination_of_known_junctions	FALSE	canonical	3	33	junction_13	123.248268963378	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGCACAGACAAATGGC	NA	False	NA	23	True	AATAAA	-24	NA	89383042	89817707	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89751578_89751657_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ES_00003319	chr1	+	2593	7	FSM	ENSMUSG00000034432.12	ENSMUST00000191510.7	2593	7	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_6	25.9293913027925	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	25	True	AATAAA	-30	NA	90531197	90540846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_90531350_90532096_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ES_00003321	chr1	+	1517	1	Intergenic	novelGene_105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGTTGTCAGTGTAGA	NA	False	NA	NA	False	NA	NA	NA	90550808	90552325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_90550800_90552300
ES_00003325	chr1	+	443	5	FSM	ENSMUSG00000026275.14	ENSMUST00000185498.7	443	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	273.43223566361	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGGAGCTGGGGTCTAA	NA	False	NA	NA	False	AATAAA	-43	NA	93271376	93280371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93271434_93278046_93278103_93278670_93278737_93279227_93279359_93280238
ES_00003331	chr1	+	5598	10	FSM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	-2674	308	-2343	-308	multi-exon	FALSE	canonical	3	12	junction_1	12.154357040244	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACCTTGTTCTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	93750287	93779762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ES_00003332	chr1	+	1292	1	FSM	ENSMUSG00000089791.2	ENSMUST00000160287.2	1395	1	-4	107	-4	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACAAATCCAAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	98385488	98386780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_98385500_98386800
ES_00003334	chr1	+	1696	12	FSM	ENSMUSG00000064302.14	ENSMUST00000189676.7	1855	12	66	93	-36	-93	multi-exon	FALSE	canonical	3	201	junction_8	18.8166446451667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTAGCTGCTACCCAGT	NA	False	NA	NA	False	NA	NA	NA	118317139	118430850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582
ES_00003335	chr1	+	7217	37	NIC	ENSMUSG00000064302.14	novel	5502	38	NA	NA	4	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_25	65.2649100792633	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTGAGTTTTTCCTAGA	NA	False	NA	8	True	NA	NA	NA	118317190	118537192	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118439904_118439953_118449556_118449665_118453026_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ES_00003336	chr1	+	1993	1	FSM	ENSMUSG00000064302.14	ENSMUST00000189384.2	2725	1	986	-254	986	254	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTATGAGTCTTTTGA	3877	False	NA	NA	False	ATTAAA	-10	NA	118463481	118465474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_118463500_118465500
ES_00003337	chr1	+	9233	16	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	472.572421257666	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118555674	118612898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117_118609404_118609440
ES_00003338	chr1	+	4881	3	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	3765	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118559440	118612898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_118559492_118608031_118609404_118609440
ES_00003339	chr1	+	1982	2	FSM	ENSMUSG00000058665.9	ENSMUST00000079721.9	2624	2	640	2	640	-2	multi-exon	FALSE	canonical	1	1	junction_1	0	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGACTGCCCTCTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	120530786	120535719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_120531651_120534601
ES_00003342	chr1	+	4642	25	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	65.5311630702014	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-15	NA	128031069	128165473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128090505_128090596_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00003343	chr1	+	4653	25	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_14	56.9085371207363	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-15	NA	128031070	128165473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128118374_128118477_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ES_00003344	chr1	+	962	3	NIC	ENSMUSG00000055184.5	novel	2191	4	NA	NA	260	-844	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	18.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCAGTGGAACGTTTAC	NA	False	NA	6	True	AGTAAA	-19	NA	131455900	131466766	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_131456591_131458391_131458470_131466572
ES_00003345	chr1	+	4731	12	NNC	ENSMUSG00000013275.10	novel	4697	11	NA	NA	-2	20861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	44.8204867561459	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTACTGTGTGTGTGTGT	5200	False	NA	NA	False	NA	NA	NA	131755712	131797464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287_131776600_131797428
ES_00003346	chr1	+	336	1	FSM	ENSMUSG00000103569.2	ENSMUST00000192346.2	1911	1	-242	1817	-242	-1817	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGGCAGAAATAATGGAA	3222	False	NA	NA	False	TATAAA	-44	NA	131842024	131842360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_131842000_131842400
ES_00003347	chr1	+	798	3	FSM	ENSMUSG00000042046.16	ENSMUST00000188006.2	2279	3	657	824	657	-824	multi-exon	FALSE	canonical	3	46	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATGCAGAGTTAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	132382969	132384553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132383147_132383597_132383728_132384062
ES_00003348	chr1	+	6850	16	Fusion	ENSMUSG00000048174.3_ENSMUSG00000026439.15	novel	2856	14	NA	NA	-7115	0	intron_retention	FALSE	canonical	2	5	junction_1	130.256908539326	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGGCAGTCTAACCCT	NA	False	NA	6	True	AATAAA	-16	NA	132397987	132436377	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr1_+_132398126_132399759_132399806_132405044_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
ES_00003350	chr1	+	3853	1	FSM	ENSMUSG00000026439.15	ENSMUST00000187834.2	1923	1	-1930	0	-1930	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACAAGTATACATGC	NA	False	NA	5	True	AATAAA	-14	NA	132429540	132433393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_132429500_132433400
ES_00003351	chr1	+	5241	21	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	38934	-4	16367	4	3prime_fragment	FALSE	canonical	2	9	junction_11	3.18237332819391	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATCATTATTAAAGATCG	NA	False	NA	NA	False	AATAAA	-19	NA	133012683	133036429	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_133012724_133013238_133013351_133014674_133014818_133015925_133016115_133017703_133017798_133017908_133018004_133018418_133018600_133019298_133019407_133020009_133020103_133021393_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ES_00003352	chr1	+	6958	22	NNC	ENSMUSG00000041757.18	novel	4820	22	NA	NA	23332	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	8.20181938778472	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGGTGTGTGTGTGTCC	162	False	NA	NA	False	AATAAA	-15	NA	133132390	133231169	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_133132520_133186746_133186828_133187779_133187895_133191534_133191640_133192398_133192472_133194303_133194405_133197797_133197941_133199946_133200430_133201595_133202113_133208076_133208146_133209520_133209602_133209854_133210005_133211008_133211105_133212617_133212730_133212984_133213125_133215207_133215338_133215511_133215619_133220089_133220267_133221443_133221612_133221691_133221826_133226657_133226782_133227446
ES_00003353	chr1	+	576	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-882	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	21.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7972	False	NA	4	True	AATAAA	-16	NA	133254067	133257460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_133254146_133254947_133255079_133257093
ES_00003354	chr1	+	225	2	Intergenic	novelGene_141	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	20	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCTAGAAACCAGACTTA	5327	False	NA	NA	False	NA	NA	NA	133261461	133267129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_133261514_133266956
ES_00003355	chr1	+	1328	9	FSM	ENSMUSG00000070645.6	ENSMUST00000094556.3	1592	9	259	5	259	-5	multi-exon	FALSE	canonical	1	2	junction_1	2.17586189819115	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTTCGGATGGGTTCT	6265	False	NA	5	True	AATAAA	-16	NA	133278506	133288058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_133278536_133281864_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
ES_00003356	chr1	+	1767	12	FSM	ENSMUSG00000026450.15	ENSMUST00000159963.8	1815	12	13	35	13	-34	multi-exon	FALSE	canonical	0	0	junction_2	2.91760118834204	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTATCTGAAAAATAAACA	1449	False	NA	NA	False	NA	NA	NA	134038992	134079243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134039101_134066378_134066511_134067997_134068028_134070977_134071180_134071748_134071806_134072989_134073156_134073328_134073454_134074299_134074424_134076073_134076260_134077113_134077222_134078216_134078344_134078841
ES_00003357	chr1	+	1684	10	FSM	ENSMUSG00000064246.11	ENSMUST00000082060.10	1687	10	0	3	0	-1	multi-exon	FALSE	canonical	1	1	junction_5	1.61780219761789	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAACGGTGTGCTATAATT	802	False	NA	NA	False	AATAAA	-10	NA	134110141	134117764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_134110291_134110517_134110548_134111234_134111440_134111861_134111919_134112886_134113038_134114242_134114365_134115607_134115732_134116232_134116416_134116934_134117052_134117218
ES_00003358	chr1	+	915	3	FSM	ENSMUSG00000097988.2	ENSMUST00000182275.2	915	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTAGGTCCAGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	135036698	135041116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_135036780_135037873_135038093_135040501
ES_00003360	chr1	+	1143	6	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5003	2	-221	-2	3prime_fragment	FALSE	canonical	3	26	junction_1	26.8730348118704	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGGTTTCTGTAGCCCT	3350	False	NA	41	True	ATTAAA	-22	NA	135732573	135738725	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ES_00003361	chr1	+	1173	13	NIC	ENSMUSG00000026414.14	novel	1094	14	NA	NA	-69	1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	6.17960354715414	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATGGAATAGTGTTTCTC	706	False	NA	2	True	AATAAA	-17	NA	135768525	135779999	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_135768651_135771511_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448_135778559_135779089_135779181_135779433_135779475_135779764
ES_00003362	chr1	+	404	3	FSM	ENSMUSG00000097113.8	ENSMUST00000181524.8	413	3	0	9	0	-7	multi-exon	FALSE	canonical	1	3	junction_1	3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAACAGTTCCTTTCTTGC	NA	False	NA	NA	False	AATAAA	-13	NA	136611133	136618533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_136611212_136616481_136616549_136618274
ES_00003363	chr1	+	2969	1	FSM	ENSMUSG00000104436.2	ENSMUST00000194246.2	3342	1	424	-51	424	51	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGAGGAGTAAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	138896671	138899640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_138896700_138899600
ES_00003365	chr1	+	9819	28	NNC	ENSMUSG00000033952.15	novel	9867	28	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_27	27.7366114713425	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTGTGTGTGGTTT	NA	False	NA	15	True	NA	NA	NA	139382548	139421829	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_139382943_139384477_139384622_139384774_139386183_139389163_139389269_139389509_139389657_139390793_139391040_139391973_139392042_139395655_139395798_139396355_139396487_139397073_139397250_139398175_139398322_139398409_139398496_139399308_139399531_139401275_139401484_139401575_139401719_139401982_139402112_139404445_139404641_139405083_139408879_139410075_139410243_139413437_139413526_139414944_139415155_139416125_139416276_139417383_139417576_139417701_139417895_139418036_139418192_139419255_139419433_139420444_139420603_139421385
ES_00003367	chr1	+	344	1	FSM	ENSMUSG00000018196.19	ENSMUST00000190211.2	2250	1	1872	34	304	31	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAATAAAGAAAATATCC	NA	False	NA	NA	False	NA	NA	NA	143621024	143621368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_143621000_143621400
ES_00003368	chr1	+	533	2	FSM	ENSMUSG00000006005.19	ENSMUST00000131701.2	572	2	0	39	0	-39	multi-exon	FALSE	canonical	3	582	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCCTTCAGGCCTAGAG	NA	False	NA	NA	False	NA	NA	NA	150269134	150271207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_150269410_150270949
ES_00003371	chr1	+	718	5	ISM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	0	12699	0	0	5prime_fragment	FALSE	canonical	3	12	junction_3	1.87082869338697	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGCCAAAAAGGACTATCT	559	False	NA	NA	False	NA	NA	NA	152683640	152700042	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967
ES_00003372	chr1	+	555	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	256	3502	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	13	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTTAAGTTCAAAA	NA	False	NA	10	True	NA	NA	NA	152969481	152973845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_152969599_152969782_152969860_152973484
ES_00003373	chr1	+	279	1	FSM	ENSMUSG00000103543.2	ENSMUST00000192184.2	820	1	624	-83	624	83	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGCGAATTTTTTGTTT	NA	False	NA	NA	False	AATAAA	-39	NA	153319850	153320129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_153319800_153320100
ES_00003375	chr1	+	3413	1	ISM	ENSMUSG00000026596.14	ENSMUST00000166172.9	10151	13	87169	0	30233	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCAAGTTGTGTTTTG	2955	False	NA	29	True	AATAAA	-42	NA	156473725	156477138	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_156473700_156477100
ES_00003376	chr1	+	333	1	FSM	ENSMUSG00000046057.5	ENSMUST00000121352.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTACTCATCTGAATAAT	5163	False	NA	NA	False	NA	NA	NA	156621081	156621414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_156621100_156621400
ES_00003377	chr1	+	1128	7	FSM	ENSMUSG00000033488.12	ENSMUST00000119891.7	1125	7	-3	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	19.7624784770422	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286146	157316630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157316012
ES_00003378	chr1	+	3152	21	NNC	ENSMUSG00000040782.13	novel	5116	20	NA	NA	-128	346	at_least_one_novel_splicesite	TRUE	canonical	2	14	junction_7	105.035755816769	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTGGTGAGTAATTTTA	NA	False	NA	NA	False	AAGAAA	-3	NA	159059761	159173016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_159060421_159067131_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159086216_159086313_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
ES_00003381	chr1	+	543	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159404.8	539	9	-4	0	0	0	multi-exon	FALSE	canonical	3	3218	junction_6	984.05626585831	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGACTGCACCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	160862732	160865816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160865118_160865564_160865608_160865794
ES_00003382	chr1	+	904	10	FSM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1101.2203780296	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAACTGTGAAGTGTGCA	NA	False	NA	16	True	ATTAAA	-12	NA	160862732	160866103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865608_160865794_160865843_160866026
ES_00003383	chr1	+	664	5	FSM	ENSMUSG00000044835.16	ENSMUST00000125018.8	673	5	9	0	9	0	multi-exon	FALSE	canonical	0	0	junction_1	43.41370751272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGAGTGGTTGGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	160970269	160990865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_160970289_160978534_160978888_160982815_160982984_160988236_160988332_160990836
ES_00003385	chr1	+	3606	8	NNC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	42.3546735006532	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATGTTACACGTTTT	NA	False	NA	6	True	NA	NA	NA	160970336	160998068	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_160970414_160978540_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281_160995541_160995590
ES_00003386	chr1	+	791	3	FSM	ENSMUSG00000026687.15	ENSMUST00000191715.2	840	3	49	0	49	0	multi-exon	FALSE	canonical	3	700	junction_1	19.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTTTGAAAATGTGCACA	NA	False	NA	NA	False	NA	NA	NA	167191783	167195216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_167192219_167193343_167193457_167194973
ES_00003387	chr1	+	817	1	FSM	ENSMUSG00000096968.2	ENSMUST00000180542.2	817	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAGGTATTACTCAGC	2834	False	NA	NA	False	NA	NA	NA	170712633	170713450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_170712600_170713400
ES_00003388	chr1	+	4352	9	FSM	ENSMUSG00000006403.14	ENSMUST00000111315.9	4389	9	0	37	0	-36	multi-exon	FALSE	canonical	1	1	junction_1	2.3418742493994	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTATTGCCTAATAATCAA	NA	False	NA	NA	False	NA	NA	NA	171077989	171088169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171079039_171080105_171080430_171080655_171080789_171081461_171081633_171083716_171084004_171084096_171084284_171084523_171084700_171085287_171085464_171086320
ES_00003389	chr1	+	4483	12	FSM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	11	0	11	0	multi-exon	FALSE	canonical	0	0	junction_5	11.0123897167112	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATGTACTTTGTCTT	2503	False	NA	NA	False	AATAAA	-28	NA	171216532	171237808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_171216932_171225042_171225146_171228123_171228269_171229492_171229576_171229724_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
ES_00003390	chr1	+	1783	10	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	6	-22	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	55.998015837865	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTTAAAGATA	6764	False	NA	27	True	NA	NA	NA	171238907	171246289	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ES_00003391	chr1	+	204	1	Intergenic	novelGene_203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTTTTAAGACAGGGTT	2371	False	NA	NA	False	NA	NA	NA	171283684	171283888	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171283700_171283900
ES_00003392	chr1	+	202	1	ISM	ENSMUSG00000015316.12	ENSMUST00000163992.3	4420	5	26057	2418	26057	-2418	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTCCAACAGTACTCTC	1549	False	NA	NA	False	NA	NA	NA	171620779	171620981	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_171620800_171621000
ES_00003394	chr1	+	843	1	FSM	ENSMUSG00000026554.16	ENSMUST00000192428.2	4537	1	238	3456	238	3365	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATTTTTTTGTTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	172006341	172007184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172006300_172007200
ES_00003395	chr1	+	2391	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	-74	121	-74	0	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTTCCCTCAAGTTTCC	3669	False	NA	NA	False	NA	NA	NA	172139859	172147287	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
ES_00003397	chr1	+	436	3	FSM	ENSMUSG00000037995.16	ENSMUST00000132141.8	608	3	24	148	13	35	multi-exon	FALSE	canonical	1	1	junction_2	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAAGTTGGGGAGCAGG	NA	False	NA	NA	False	NA	NA	NA	172309810	172317232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_172309828_172311847_172312114_172317079
ES_00003399	chr1	+	2250	6	NNC	ENSMUSG00000026523.15	novel	2161	16	NA	NA	-8223	33343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.03492377064027	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCATCCTGGAACTCACT	NA	False	NA	NA	False	NA	NA	NA	175586380	175604795	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_175586400_175591507_175591635_175594571_175594721_175597071_175597196_175599738_175599915_175603140
ES_00003401	chr1	+	9913	37	NIC	ENSMUSG00000026490.19	novel	9161	37	NA	NA	-518	2	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	17.1587540196301	272	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGTATTCTATTTCTTC	NA	False	NA	4	True	AATAAA	-17	NA	179787518	179993170	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_+_179788853_179826926_179827019_179852209_179852368_179859069_179859154_179864393_179864490_179867616_179867766_179889354_179889449_179892530_179892732_179894715_179894965_179896861_179896942_179899909_179900077_179902134_179902258_179911936_179912071_179921508_179921752_179921945_179922057_179928589_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ES_00003402	chr1	+	5173	11	NNC	ENSMUSG00000026490.19	novel	951	2	NA	NA	16054	3	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	19.8403628999068	380	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTATTCTATTTCTTCC	6229	False	NA	5	True	AATAAA	-18	NA	179967384	179993171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_179967411_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ES_00003404	chr1	+	3098	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	32.1742478112888	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468919	180518252	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_180468963_180469414_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ES_00003405	chr1	+	1760	5	NNC	ENSMUSG00000038793.9	novel	1620	4	NA	NA	-6704	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	103.353761421634	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	5963	False	NA	8	True	AATAAA	-17	NA	180755882	180765965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_180756045_180762608_180762925_180764111_180764359_180764573_180764820_180765176
ES_00003406	chr1	+	219	1	FSM	ENSMUSG00000054135.3	ENSMUST00000181680.2	2513	1	-134	2428	-134	-2420	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCTTTGAAAAGGAATTA	2159	False	NA	NA	False	NA	NA	NA	181053416	181053635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_181053400_181053600
ES_00003407	chr1	+	3099	9	NNC	ENSMUSG00000038576.16	novel	1898	9	NA	NA	170	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	9.91762950507832	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTGTGACTTTAATG	NA	False	NA	NA	False	ATTAAA	-22	NA	182591746	182724162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686175_182714897_182715097_182716332_182716478_182719447_182719831_182722763
ES_00003408	chr1	+	359	1	FSM	ENSMUSG00000042901.11	ENSMUST00000192252.2	1932	1	1341	232	361	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTCGCTTGGCTGCTT	NA	False	NA	NA	False	NA	NA	NA	183079474	183079833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_183079500_183079800
ES_00003409	chr1	+	5756	4	FSM	ENSMUSG00000026614.8	ENSMUST00000061093.7	5836	4	78	2	78	-2	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTTCCTGGACTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	185187122	185200957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185187877_185188548_185188627_185194883_185195124_185196273
ES_00003410	chr1	+	630	1	FSM	ENSMUSG00000102185.2	ENSMUST00000192616.2	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGACGTCGTACCTGTCA	NA	False	NA	NA	False	AAAACA	-33	NA	185229584	185230214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_185229600_185230200
ES_00003411	chr1	+	666	1	FSM	ENSMUSG00000097935.2	ENSMUST00000180973.2	1006	1	370	-30	370	30	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTGAGAGCAAGAGAGAGA	NA	False	NA	NA	False	AAGAAA	-27	NA	186693074	186693740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_186693100_186693700
ES_00003412	chr1	+	3901	1	FSM	ENSMUSG00000104394.3	ENSMUST00000193542.3	3901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGTAGTCTTTATTTCT	975	False	NA	NA	False	AATAAA	-15	NA	186968653	186972554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_186968700_186972600
ES_00003413	chr1	+	4499	1	FSM	ENSMUSG00000104435.2	ENSMUST00000193794.2	4718	1	557	-338	557	338	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGGGGGCTGAGGTGAGC	NA	False	NA	NA	False	NA	NA	NA	189612688	189617187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_189612700_189617200
ES_00003414	chr1	+	3666	9	FSM	ENSMUSG00000026634.17	ENSMUST00000110899.7	3673	9	4	3	4	-3	multi-exon	FALSE	canonical	3	10	junction_1	60.2136820000239	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTGTTGTGGACAGAGAA	NA	False	NA	13	True	AATAAA	-15	NA	190660692	190679156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_190660915_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ES_00003415	chr1	+	1184	1	FSM	ENSMUSG00000073478.7	ENSMUST00000194375.2	1667	1	30	453	30	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTTCAGTTTCTTCT	NA	False	NA	11	True	GATAAA	-17	NA	190956700	190957884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_190956700_190957900
ES_00003416	chr1	+	312	2	Intergenic	novelGene_231	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTACATCCACAGGCCAAG	1893	False	NA	NA	False	NA	NA	NA	191269024	191269361	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_191269238_191269262
ES_00003417	chr1	+	4153	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	0	-70	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	65.9688562884032	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTTACCTTTTTTT	8333	False	NA	28	True	AATAAA	-17	NA	191307887	191354788	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353914_191353955
ES_00003419	chr1	+	232	1	FSM	ENSMUSG00000102915.2	ENSMUST00000195647.2	232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCGAACCGCCTTCCG	5625	False	NA	NA	False	AAGAAA	-4	NA	191724821	191725053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_+_191724800_191725100
ES_00003423	chr1	-	1835	2	FSM	ENSMUSG00000025902.14	ENSMUST00000191939.2	840	2	549	-1544	418	10	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTAATTTCAACCGTGC	NA	False	NA	NA	False	AATAAA	-30	NA	4563409	4561143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_4562892_4563322
ES_00003424	chr1	-	1030	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	12091	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	884.264304379635	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAACAACCCTTCTTT	1667	False	NA	NA	False	NA	NA	NA	4855915	4831337	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_4831374_4846595_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00003425	chr1	-	1025	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	12091	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	884.264304379635	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAACAACCCTTCTTT	1667	False	NA	NA	False	NA	NA	NA	4855915	4831337	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_4831375_4846601_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00003426	chr1	-	1070	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	12091	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	884.264304379635	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAACAACCCTTCTTT	1620	False	NA	NA	False	NA	NA	NA	4855962	4831337	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_4831374_4846602_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ES_00003429	chr1	-	396	1	FSM	ENSMUSG00000098201.2	ENSMUST00000182051.2	388	1	32	-40	32	40	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATTTGGGAA	NA	False	NA	NA	False	AATAAA	-19	NA	7206778	7206382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_7206400_7206800
ES_00003430	chr1	-	206	2	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGACTGCTCTTCGGAAG	NA	False	NA	NA	False	NA	NA	NA	9885303	9832542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_9832697_9885251
ES_00003432	chr1	-	877	6	FSM	ENSMUSG00000025917.10	ENSMUST00000190155.7	877	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	400.591263010066	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10105353	10095067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10103482_10103549_10104232_10104362_10105153
ES_00003433	chr1	-	2204	5	FSM	ENSMUSG00000025917.10	ENSMUST00000139578.8	2204	5	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_4	120.517633564554	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10108163	10101144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ES_00003434	chr1	-	3941	21	ISM	ENSMUSG00000067851.12	ENSMUST00000088615.11	6978	38	-386	35164	-386	340	5prime_fragment	FALSE	canonical	3	88	junction_18	20.6434008826065	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTGTCTAACATGTTATA	NA	False	NA	NA	False	AATATA	-15	NA	10303281	10242959	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
ES_00003436	chr1	-	246	3	Intergenic	novelGene_18	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAACGGTTTAAATACCA	NA	False	NA	NA	False	NA	NA	NA	13261113	13199578	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_13199603_13241748_13241775_13260917
ES_00003440	chr1	-	1597	5	FSM	ENSMUSG00000043716.14	ENSMUST00000141217.2	1597	5	0	0	0	0	multi-exon	FALSE	canonical	3	5452	junction_4	739.819403638483	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16172161_16172713_16172824_16172915_16173559_16173733_16173909_16174588
ES_00003441	chr1	-	1229	2	FSM	ENSMUSG00000043716.14	ENSMUST00000151017.2	1229	2	0	0	0	0	multi-exon	FALSE	canonical	3	6432	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCAAGTGCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	16173072	16171751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16172824_16172915
ES_00003443	chr1	-	2789	10	NIC	ENSMUSG00000025920.20	novel	2964	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	31.6372182760576	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTGATTCATATAGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	16589449	16414514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16579565_16579633_16589396
ES_00003445	chr1	-	620	5	FSM	ENSMUSG00000079658.10	ENSMUST00000187910.7	620	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	1109.6870054209	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGCAGATTCCTTCTGTCA	NA	False	NA	74	True	NA	NA	NA	16727262	16713392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_16713703_16715909_16716054_16717211_16717278_16718178_16718232_16727215
ES_00003446	chr1	-	4196	6	NNC	ENSMUSG00000042686.6	novel	4809	5	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.29285308902091	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGTGTCTTTCCTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	17168074	17065161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_17067114_17067687_17067784_17074114_17074759_17086262_17086382_17161521_17162282_17167449
ES_00003447	chr1	-	1949	1	FSM	ENSMUSG00000041859.11	ENSMUST00000188112.2	716	1	-780	-453	432	415	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCCTTTGTCCTTCCTC	NA	False	NA	5	True	AATAAA	-27	NA	20874725	20872776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_20872800_20874700
ES_00003448	chr1	-	442	3	Intergenic	novelGene_22	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	36.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTGTGAGATTCGTTC	NA	False	NA	7	True	ATTAAA	-29	NA	21326280	21323495	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_21323669_21324392_21324598_21326216
ES_00003449	chr1	-	551	4	Intergenic	novelGene_23	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_2	29.9369708257569	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTGTGAGATTCGTTC	NA	False	NA	7	True	ATTAAA	-29	NA	21326447	21323495	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_21323669_21324392_21324598_21326110_21326225_21326388
ES_00003450	chr1	-	3043	5	ISM	ENSMUSG00000041670.20	ENSMUST00000164877.8	2294	6	18929	-943	18929	279	3prime_fragment	TRUE	canonical	3	7	junction_4	1.4790199457749	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAAGGTCGTTTCTCTGCTG	NA	False	NA	NA	False	AATAAA	-18	NA	22367100	22356195	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_22358865_22360283_22360424_22361236_22361339_22363045_22363159_22367081
ES_00003453	chr1	-	783	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14711	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_24652300_24653100
ES_00003454	chr1	-	1387	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14694	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_9	88.3062851670253	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2972	False	NA	-2	True	AATAAA	-18	NA	33677099	33492890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33677047
ES_00003457	chr1	-	1414	6	NNC	ENSMUSG00000042111.10	novel	1705	5	NA	NA	314	34823	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.707899420999	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCAGA	7518	False	NA	NA	False	NA	NA	NA	34478439	34440927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_34440954_34475753_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ES_00003458	chr1	-	1372	1	FSM	ENSMUSG00000102434.2	ENSMUST00000195698.2	1372	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAGATATGTAAGGCCCT	NA	False	NA	NA	False	AATAAA	-18	NA	36070099	36068727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36068700_36070100
ES_00003462	chr1	-	2374	4	FSM	ENSMUSG00000047180.9	ENSMUST00000056946.8	2598	4	0	224	0	-224	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAAGTCAGTCTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36312516	36303901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36305635_36307736_36307791_36308293_36308783_36312418
ES_00003463	chr1	-	3365	20	NIC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	7	642	combination_of_known_junctions	FALSE	canonical	3	15	junction_19	42.6989071979632	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCAAAGTTTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	36407115	36376011	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404714_36406849
ES_00003464	chr1	-	3363	21	NNC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	0	642	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_19	53.7390686558671	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCAAAGTTTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	36408236	36376011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393243_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404714_36406849_36407116_36408185
ES_00003468	chr1	-	2169	7	FSM	ENSMUSG00000001143.14	ENSMUST00000001171.13	2174	7	5	0	5	0	multi-exon	FALSE	canonical	2	10	junction_4	67.569717082926	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484347	36462266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36478689_36478808_36482571_36482691_36484130
ES_00003470	chr1	-	3667	15	FSM	ENSMUSG00000026121.14	ENSMUST00000191677.6	3779	15	93	19	-6	-16	multi-exon	FALSE	canonical	1	1	junction_14	3.99042220670383	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCCTGCCACACAGAT	NA	False	NA	NA	False	AATAAA	-16	NA	36597337	36587738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36589450_36589586_36589658_36589748_36589910_36590806_36590920_36591007_36591231_36591332_36591478_36591799_36591976_36592059_36592212_36592304_36592422_36592551_36592649_36592796_36592896_36593006_36593070_36593332_36593482_36595012_36595162_36597096
ES_00003471	chr1	-	6721	43	NNC	ENSMUSG00000026116.12	novel	6698	42	NA	NA	1	21800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.0532267054416	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATAGGGGAAGCTGGACG	6927	False	NA	NA	False	NA	NA	NA	36978902	36809471	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_36809505_36831283_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245_36978638_36978777
ES_00003472	chr1	-	385	1	FSM	ENSMUSG00000080054.4	ENSMUST00000116168.4	498	1	169	-56	169	56	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAATTAAAACATTT	NA	False	NA	NA	False	AATAAA	-30	NA	36997339	36996954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_36997000_36997300
ES_00003475	chr1	-	1787	6	NNC	ENSMUSG00000026082.12	novel	4262	23	NA	NA	22	4573	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	75.5237710922859	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTTGAACTTACAGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	38168721	38126658	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_38127756_38131145_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
ES_00003477	chr1	-	1528	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	38	-3	38	3	multi-exon	FALSE	canonical	1	1	junction_1	0.4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTGGACTAATGATTAA	NA	False	NA	1	True	AATAAA	-33	NA	43203083	43162230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
ES_00003478	chr1	-	1819	14	NIC	ENSMUSG00000057363.13	novel	1921	15	NA	NA	0	-15	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	53.1063463596267	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGTTTTGAGCTACAAA	NA	False	NA	-17	True	AATAAA	-19	NA	43866901	43788686	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
ES_00003480	chr1	-	4600	11	NNC	ENSMUSG00000025986.7	novel	5498	10	NA	NA	503	433549	at_least_one_novel_splicesite	TRUE	canonical	2	46	junction_1	71.8699519966446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTAGCCAAATTTTAAC	431	False	NA	NA	False	NA	NA	NA	46892703	46413154	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_46413210_46847153_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
ES_00003481	chr1	-	5025	11	NNC	ENSMUSG00000025986.7	novel	5498	10	NA	NA	503	59455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	85.2117949582099	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGAAAACCTGGTAGAT	431	False	NA	NA	False	NA	NA	NA	46892703	46787248	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_46787280_46846704_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
ES_00003482	chr1	-	5938	11	NNC	ENSMUSG00000025986.7	novel	5498	10	NA	NA	522	828	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_10	105.535823301853	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCCAACTGTTCATCA	450	False	NA	NA	False	AATAAA	-20	NA	46892684	46845875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46880907_46881042_46892630
ES_00003483	chr1	-	597	1	FSM	ENSMUSG00000078291.2	ENSMUST00000105087.2	432	1	0	-165	0	165	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATAGCTGTCTCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	52130225	52129628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52129600_52130200
ES_00003485	chr1	-	4566	16	NIC	ENSMUSG00000026103.15	novel	5596	15	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_8	72.0864912603063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGTTTTTTTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	52272366	52224438	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52243504_52243676_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ES_00003489	chr1	-	1247	1	FSM	ENSMUSG00000097833.2	ENSMUST00000180794.2	996	1	153	-404	153	404	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTCCTTAGCTTTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	52543235	52541988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52542000_52543200
ES_00003491	chr1	-	3550	2	FSM	ENSMUSG00000043629.13	ENSMUST00000114492.8	3565	2	15	0	15	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	189	False	NA	-5	True	AATAAA	-14	NA	52992494	52961482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_52964894_52992355
ES_00003492	chr1	-	570	8	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_7	12.1504178142657	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226795	53197735	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
ES_00003493	chr1	-	3054	5	FSM	ENSMUSG00000026098.14	ENSMUST00000142922.2	3054	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	65.1267993993256	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGATCAAGGGAAAATAAGA	6103	False	NA	NA	False	TTTAAA	-5	NA	53336126	53302053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_53304588_53306986_53307090_53314228_53314412_53321099_53321252_53336044
ES_00003496	chr1	-	743	4	FSM	ENSMUSG00000096141.3	ENSMUST00000189677.2	732	4	0	-11	0	11	multi-exon	FALSE	canonical	0	0	junction_3	1.63299316185545	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTGGATTCTTTTCTG	5432	False	NA	NA	False	AATAAA	-24	NA	53745943	53737177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_53737688_53737790_53737854_53741176_53741240_53745836
ES_00003497	chr1	-	1661	1	FSM	ENSMUSG00000104136.2	ENSMUST00000194316.2	1661	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAATAAAGAAATCAC	NA	False	NA	NA	False	NA	NA	NA	54559429	54557768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_54557800_54559400
ES_00003499	chr1	-	6190	28	FSM	ENSMUSG00000052331.15	ENSMUST00000044359.16	6192	28	0	2	0	-2	multi-exon	FALSE	canonical	1	2	junction_15	2.93552106969398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGTGTGTTTTCTTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	54965546	54684502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_54687495_54690827_54690920_54692901_54692985_54694238_54694322_54694819_54694966_54696774_54696859_54698077_54698166_54700159_54700377_54701812_54701931_54703057_54703146_54706530_54706733_54720278_54720351_54762172_54762285_54766648_54766730_54768892_54769034_54772086_54772156_54774154_54774273_54775388_54775472_54782472_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508_54805597_54805942_54806144_54817445_54817517_54831611_54831691_54867770_54867855_54965298
ES_00003500	chr1	-	5332	1	FSM	ENSMUSG00000102503.2	ENSMUST00000191996.2	1410	1	-4086	164	-4086	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCACCTGCATAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	54781820	54776488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_54776500_54781800
ES_00003501	chr1	-	2273	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	128	2	at_least_one_novel_splicesite	FALSE	canonical	2	607	junction_10	1704.50371342831	171	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGTTACCCTTTCCA	4583	False	NA	-4	True	AATAAA	-18	NA	55127055	55116991	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123921_55125924_55126101_55126937
ES_00003502	chr1	-	358	2	Intergenic	novelGene_65	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	198	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATAAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	55155037	55145697	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_55145805_55154786
ES_00003503	chr1	-	1736	13	NNC	ENSMUSG00000026034.18	novel	1796	13	NA	NA	0	29318	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.2090544328258	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCACGTTTAGTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	58463225	58420029	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_58420061_58451158_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ES_00003504	chr1	-	998	1	FSM	ENSMUSG00000103839.2	ENSMUST00000194925.2	2623	1	1803	-178	1803	178	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGATTATCCTT	563	False	NA	NA	False	NA	NA	NA	58423490	58422492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58422500_58423500
ES_00003505	chr1	-	1538	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ES_00003507	chr1	-	791	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	60.3869467131212	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATGCCTTTTTTTTTTT	NA	False	NA	-25	True	AATAGA	-2	NA	58484641	58470178	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
ES_00003508	chr1	-	815	2	FSM	ENSMUSG00000026028.13	ENSMUST00000173719.2	828	2	0	13	0	-13	multi-exon	FALSE	canonical	3	57	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAAGAACATAAGAG	1547	False	NA	NA	False	NA	NA	NA	59012589	58985073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_58985695_59012395
ES_00003509	chr1	-	1903	13	FSM	ENSMUSG00000072295.8	ENSMUST00000097080.4	2131	13	7	221	0	-221	multi-exon	FALSE	canonical	1	1	junction_7	3.19722101554181	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAAACGTGTCTAAATAT	NA	False	NA	NA	False	AATAAA	-26	NA	59134052	59089885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59090445_59091654_59091693_59097814_59097879_59099730_59099837_59101554_59101690_59105308_59105389_59106935_59107005_59107841_59107887_59108875_59109002_59114155_59114302_59115829_59115882_59117041_59117129_59133656
ES_00003510	chr1	-	1839	13	NIC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	18	33	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	71.3903588261982	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCGCCAGTTATTTTCCT	4070	False	NA	23	True	TTTAAA	-2	NA	59159235	59139715	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159155
ES_00003513	chr1	-	524	3	FSM	ENSMUSG00000026021.16	ENSMUST00000123857.2	829	3	0	305	0	-305	multi-exon	FALSE	canonical	3	3473	junction_2	443	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCAAGCCTTTTAGG	589	False	NA	NA	False	NA	NA	NA	59709993	59683459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59683754_59694616_59694692_59709838
ES_00003514	chr1	-	1872	1	FSM	ENSMUSG00000103821.2	ENSMUST00000192922.2	1872	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATATAGGC	NA	False	NA	NA	False	NA	NA	NA	59687230	59685358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_59685400_59687200
ES_00003515	chr1	-	652	1	FSM	ENSMUSG00000082160.2	ENSMUST00000118530.2	459	1	77	-270	77	270	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTAAAAAACCTAGTTGA	NA	False	NA	NA	False	AAGAAA	-44	NA	60631791	60631139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60631100_60631800
ES_00003516	chr1	-	506	1	FSM	ENSMUSG00000080800.2	ENSMUST00000121041.2	236	1	10	-280	10	280	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACCATACAAATG	NA	False	NA	NA	False	AATAAA	-18	NA	60987614	60987108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_60987100_60987600
ES_00003517	chr1	-	2765	21	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	0	498	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.915368010356	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAAAAAGTAATTAAA	NA	False	NA	NA	False	NA	NA	NA	63215952	63182256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_63182285_63182753_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
ES_00003520	chr1	-	1368	10	FSM	ENSMUSG00000025955.14	ENSMUST00000069142.12	1761	10	9	384	-2	-384	multi-exon	FALSE	canonical	0	0	junction_1	0.993807989999907	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTTTTATTTGTATGGT	8372	False	NA	NA	False	AATAAA	-31	NA	65071909	65052231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_65052469_65053835_65053919_65055225_65055392_65055823_65055934_65060541_65060665_65061077_65061156_65063821_65063939_65064721_65064890_65069726_65069848_65071744
ES_00003521	chr1	-	620	2	FSM	ENSMUSG00000070870.7	ENSMUST00000161960.2	690	2	59	11	59	-11	multi-exon	FALSE	canonical	3	12	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCATGCAATAACAGAGT	NA	False	NA	NA	False	AATAAA	-14	NA	65090219	65087726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_65088056_65089928
ES_00003524	chr1	-	678	1	FSM	ENSMUSG00000099954.2	ENSMUST00000190898.2	1875	1	1193	4	1193	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGTAAAATCCCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	69700027	69699349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_69699300_69700000
ES_00003526	chr1	-	252	1	FSM	ENSMUSG00000100319.2	ENSMUST00000191412.2	877	1	500	125	500	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGGTGGAAGATCAATC	NA	False	NA	NA	False	NA	NA	NA	71753583	71753331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_71753300_71753600
ES_00003527	chr1	-	9908	33	NIC	ENSMUSG00000055322.17	novel	9904	33	NA	NA	293	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_32	15.0083310198036	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGGCCTGGCTTCGTT	NA	False	NA	-3	True	TATAAA	-22	NA	74137542	73949390	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74137380
ES_00003528	chr1	-	1263	1	FSM	ENSMUSG00000103013.2	ENSMUST00000192088.2	319	1	-190	-754	-190	754	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTCTTCACTTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	74327209	74325946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74325900_74327200
ES_00003529	chr1	-	7286	26	NNC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_24	66.1072583004317	152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGTTTGATTTATTTGT	NA	False	NA	0	True	ATTAAA	-17	NA	74544950	74474668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483652_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74535095_74535252_74539114_74539260_74544818
ES_00003530	chr1	-	5018	20	FSM	ENSMUSG00000033364.14	ENSMUST00000191058.7	6011	20	0	993	0	-993	multi-exon	FALSE	canonical	3	147	junction_18	25.6921903048238	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGGGAGGATTTCAATT	NA	False	NA	NA	False	NA	NA	NA	74544944	74489653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ES_00003533	chr1	-	2031	14	FSM	ENSMUSG00000026200.14	ENSMUST00000132507.8	2031	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	4.45490222632931	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGCTGAAAGGGGACGA	6518	False	NA	NA	False	AATACA	-17	NA	75186138	75176472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75176771_75176973_75177106_75177587_75177702_75177841_75177932_75178042_75178118_75178386_75178506_75178693_75178735_75178830_75178953_75179051_75179111_75179218_75179394_75179490_75179586_75184962_75185024_75185330_75185867_75186024
ES_00003534	chr1	-	507	2	FSM	ENSMUSG00000026200.14	ENSMUST00000153584.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAACTGGTAAGATATAAA	1911	False	NA	NA	False	NA	NA	NA	75178467	75177849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_75177932_75178042
ES_00003536	chr1	-	6338	18	NIC	ENSMUSG00000026235.15	novel	6328	18	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	46.5081010170015	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATCTGGTTGTCTTTGT	NA	False	NA	-5	True	AATAAA	-21	NA	77491708	77343823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_77346309_77349546_77350485_77351378_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
ES_00003537	chr1	-	902	5	FSM	ENSMUSG00000054702.15	ENSMUST00000159312.2	902	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	8.55496931613434	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCATTTGATCTTCTACC	NA	False	NA	NA	False	NA	NA	NA	79649682	79586561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_79586920_79591919_79592058_79601398_79601508_79602821_79603003_79649566
ES_00003539	chr1	-	252	1	FSM	ENSMUSG00000101784.2	ENSMUST00000185805.2	1426	1	634	540	634	-540	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGCTCCAGCACCACGAA	NA	False	NA	NA	False	NA	NA	NA	82981994	82981742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_82981700_82982000
ES_00003540	chr1	-	2994	7	FSM	ENSMUSG00000038496.17	ENSMUST00000045560.15	2974	7	-20	0	-20	0	multi-exon	FALSE	canonical	1	1	junction_5	3.48409082672781	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTGGTTATTTCATT	NA	False	NA	NA	False	AATAAA	-13	NA	83016189	82990243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83005733_83005864_83016090
ES_00003542	chr1	-	9651	41	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9508	-7	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_40	232.548382062744	313	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTAGTTTTGTTACTTT	NA	False	NA	-15	True	AATAAA	-15	NA	84827745	84698916	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84827643
ES_00003545	chr1	-	2320	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2068.06504195383	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTACCTGTTCAATG	NA	False	NA	-38	True	AAGAAA	-17	NA	86287086	86278285	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284181_86284279_86284464_86284678_86285175_86285828_86285946_86286927
ES_00003547	chr1	-	210	2	Antisense	novelGene_ENSMUSG00000101328.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAAATCTTAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	86414394	86359833	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_86359855_86414205
ES_00003549	chr1	-	548	3	FSM	ENSMUSG00000005501.15	ENSMUST00000186670.2	571	3	0	23	0	-23	multi-exon	FALSE	canonical	3	46	junction_1	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	87879395	87877443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_87877750_87877880_87878092_87879364
ES_00003550	chr1	-	1343	10	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	16	5508	15	-5017	5prime_fragment	FALSE	canonical	3	59	junction_6	13.200261875442	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGGTTAGAGGAACTG	NA	False	NA	NA	False	NA	NA	NA	90017850	89975364	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ES_00003551	chr1	-	481	3	FSM	ENSMUSG00000048126.17	ENSMUST00000150769.2	646	3	165	0	165	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTCTCCAGGCAGTTCTA	NA	False	NA	NA	False	NA	NA	NA	90700772	90695110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_90695328_90696045_90696211_90700673
ES_00003552	chr1	-	572	5	FSM	ENSMUSG00000026304.14	ENSMUST00000130042.2	611	5	27	12	27	-12	multi-exon	FALSE	canonical	2	2	junction_4	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTTCCAGGTGCCGCAT	NA	False	NA	NA	False	NA	NA	NA	90897339	90887734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_90887850_90888832_90888985_90891865_90892026_90896951_90897059_90897301
ES_00003553	chr1	-	4788	27	NNC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	10	690	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_26	27.7003460555574	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTGTTAGCTCTGA	6608	False	NA	NA	False	NA	NA	NA	92108009	91859788	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896059_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909990_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107979
ES_00003558	chr1	-	3067	4	FSM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	0	30	0	-30	multi-exon	FALSE	canonical	3	13	junction_1	30.4448499567478	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGAGTTTTTGATGTGAC	NA	False	NA	NA	False	NA	NA	NA	93233585	93226962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93229307_93230439_93230625_93232329_93232829_93233546
ES_00003559	chr1	-	294	1	FSM	ENSMUSG00000100351.2	ENSMUST00000189856.2	546	1	329	-77	329	77	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGCCCAGGAACACAAATT	NA	False	NA	NA	False	NA	NA	NA	93234632	93234338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_93234300_93234600
ES_00003560	chr1	-	4401	28	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_21	111.527220837132	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93406518	93335483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358024_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
ES_00003562	chr1	-	3495	3	FSM	ENSMUSG00000044768.17	ENSMUST00000153115.8	3495	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCGTGGTGTTTTA	NA	False	NA	-1	True	AATAAA	-18	NA	97589401	97571627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_97574087_97582324_97582415_97588455
ES_00003563	chr1	-	3791	25	NIC	ENSMUSG00000026335.17	novel	4095	26	NA	NA	4	7	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	5.09884927105017	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTATTTTTGTGATTTT	NA	False	NA	1	True	AATAAA	-25	NA	98023353	97748811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
ES_00003564	chr1	-	6769	32	NNC	ENSMUSG00000056536.15	novel	6759	31	NA	NA	0	17346	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	15.8661151773854	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAGAAAAAAAGAATTG	NA	False	NA	NA	False	NA	NA	NA	105591368	105428800	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_105428825_105446145_105449853_105474388_105474442_105476789_105476833_105480096_105480171_105481788_105481865_105482168_105482225_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
ES_00003565	chr1	-	6632	30	NIC	ENSMUSG00000056536.15	novel	6759	31	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	20	junction_28	13.8006014103214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAACTGGTTTTCTTGTGA	NA	False	NA	-10	True	AATAAA	-10	NA	105591385	105446155	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_105449853_105474388_105474442_105476789_105476833_105480096_105480171_105481788_105481865_105482168_105482225_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105587017_105587092_105591224
ES_00003568	chr1	-	2045	1	FSM	ENSMUSG00000100041.2	ENSMUST00000185629.2	2469	1	790	-366	790	366	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTCCACATAGGCCCT	NA	False	NA	NA	False	AATAAA	-23	NA	108306378	108304333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_108304300_108306400
ES_00003569	chr1	-	7461	5	FSM	ENSMUSG00000026374.15	ENSMUST00000188512.7	656	5	-1866	-4939	-113	-1172	multi-exon	FALSE	canonical	3	922	junction_2	75.9584590417684	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATGTAAACAGGTAAGAG	NA	False	NA	NA	False	NA	NA	NA	118239582	118223679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502
ES_00003571	chr1	-	6567	26	NNC	ENSMUSG00000026383.15	novel	6442	25	NA	NA	-18	5265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.6930038338492	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAGGAGGTGTGGCCTTG	NA	False	NA	NA	False	NA	NA	NA	119576684	119467501	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_119467607_119472764_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ES_00003572	chr1	-	1884	17	NIC	ENSMUSG00000026383.15	novel	6442	25	NA	NA	30	-564	combination_of_known_junctions	FALSE	canonical	2	7	junction_16	21.928505991061	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTTGATTATCTCCT	NA	False	NA	NA	False	NA	NA	NA	119576317	119506430	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576146
ES_00003574	chr1	-	674	1	FSM	ENSMUSG00000102687.2	ENSMUST00000192036.2	926	1	26	226	26	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCGATAGCCACCAAGGTC	NA	False	NA	NA	False	NA	NA	NA	119559373	119558699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_119558700_119559400
ES_00003577	chr1	-	277	1	FSM	ENSMUSG00000083582.2	ENSMUST00000120499.2	219	1	8	-66	8	66	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAGTCTTGAAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	121435524	121435247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_121435200_121435500
ES_00003579	chr1	-	3008	18	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-56	69164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	806.981367403015	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTGGAGAGATGCCTCAG	NA	False	NA	NA	False	NA	NA	NA	128287457	128190162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_128190205_128259326_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ES_00003580	chr1	-	1718	2	Genic_Genomic	ENSMUSG00000100078.2	novel	1388	1	NA	NA	-54	329	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAAAAAAAGGAGATGG	NA	False	NA	NA	False	ATTAAA	-15	NA	128449251	128447480	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_128447591_128447643
ES_00003581	chr1	-	3342	14	FSM	ENSMUSG00000026409.15	ENSMUST00000171479.8	3342	14	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	7.19138208770477	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGAAATTTTCAATTCAC	5158	False	NA	NA	False	AATAAA	-27	NA	130642312	130616918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_130618886_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202
ES_00003582	chr1	-	437	1	FSM	ENSMUSG00000104515.2	ENSMUST00000195439.2	1690	1	1494	-241	1494	241	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGTACATGTAACAAGGC	6594	False	NA	NA	False	AGTAAA	-35	NA	130655064	130654627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_130654600_130655100
ES_00003583	chr1	-	3076	5	FSM	ENSMUSG00000026430.17	ENSMUST00000068564.15	3076	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.22474487139159	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGATGGAATCGTCCTT	8551	False	NA	NA	False	AATAAA	-19	NA	131127872	131104146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131106415_131108289_131108406_131108890_131109189_131109880_131109992_131127589
ES_00003584	chr1	-	2082	15	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	4808	-1	398	1	3prime_fragment	FALSE	canonical	1	3	junction_14	5.49953615854862	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAGCTATGGTACCTG	329	False	NA	NA	False	AATAAA	-20	NA	131199880	131182337	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499_131199680_131199844
ES_00003586	chr1	-	3549	22	NNC	ENSMUSG00000026425.16	novel	3533	22	NA	NA	-161	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_21	35.2586169329883	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	False	NA	0	True	AATAAA	-26	NA	131455251	131222955	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131455120
ES_00003587	chr1	-	1433	2	Antisense	novelGene_ENSMUSG00000055184.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTCTTGCTCCAGGCCC	7250	False	NA	NA	False	NA	NA	NA	131488152	131447030	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_131448445_131488133
ES_00003588	chr1	-	231	3	FSM	ENSMUSG00000059149.18	ENSMUST00000159382.2	337	3	106	0	106	0	multi-exon	FALSE	canonical	1	3	junction_2	1	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCAGTTACAGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	131974191	131968386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_131968399_131969595_131969667_131974043
ES_00003590	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537785	133531633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
ES_00003591	chr1	-	4780	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	21	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	103.726503363412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589097	133547608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133588974
ES_00003592	chr1	-	4409	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	78	junction_17	104.361959952471	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589097	133547608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588993
ES_00003593	chr1	-	5572	18	NNC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	-78	at_least_one_novel_splicesite	TRUE	non_canonical	3	69	junction_16	105.284915799034	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTGAACCATTTGCCA	NA	False	NA	-77	True	NA	NA	NA	133589019	133547677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582671_133582691_133583137_133588974
ES_00003595	chr1	-	5828	21	ISM	ENSMUSG00000026458.14	ENSMUST00000186730.7	4674	22	225	-1084	225	1083	3prime_fragment	TRUE	canonical	2	30	junction_19	10.0641691162261	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTATGAGATCCAGCT	NA	False	NA	NA	False	NA	NA	NA	134254779	134223437	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553
ES_00003596	chr1	-	390	1	Intergenic	novelGene_143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	134285121	134284731	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_134284700_134285100
ES_00003597	chr1	-	885	1	FSM	ENSMUSG00000102722.2	ENSMUST00000192012.2	982	1	101	-4	101	4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATCTACTGGTTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	134383110	134382225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_134382200_134383100
ES_00003598	chr1	-	1135	2	FSM	ENSMUSG00000046367.11	ENSMUST00000052911.8	1360	2	0	225	0	-215	multi-exon	FALSE	canonical	2	2	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCATTCTGGAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	134474760	134468907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_134469904_134474621
ES_00003599	chr1	-	2686	20	FSM	ENSMUSG00000073557.13	ENSMUST00000132025.2	3213	20	158	369	81	-369	multi-exon	FALSE	canonical	0	0	junction_18	2.03433137790397	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGACCGACCGACTGG	NA	False	NA	NA	False	NA	NA	NA	134883508	134762172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_134762215_134763522_134763636_134763715_134763906_134765590_134765780_134770380_134770472_134793515_134793699_134797805_134797989_134800005_134800049_134800544_134800671_134801676_134801760_134803702_134803904_134807370_134807484_134814160_134814301_134815012_134815093_134818493_134818569_134819895_134820041_134821087_134821248_134824080_134824200_134830115_134830247_134883229
ES_00003600	chr1	-	812	2	FSM	ENSMUSG00000097993.8	ENSMUST00000182120.2	717	2	-94	-1	59	1	multi-exon	FALSE	canonical	3	18	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGTCTGCTTCTGCAT	NA	False	NA	1	True	AATAAA	-20	NA	135037268	135036233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_135036434_135036656
ES_00003602	chr1	-	205	1	Genic_Genomic	ENSMUSG00000097993.8	novel	NA	NA	NA	NA	-202	-375	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGGAAGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	135039486	135039281	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_135039300_135039500
ES_00003604	chr1	-	963	7	NNC	ENSMUSG00000062580.10	novel	7280	6	NA	NA	26	9971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1006.50031738141	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGAAAAGTTTCAATCCC	NA	False	NA	NA	False	NA	NA	NA	135241490	135212979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_135213008_135229269_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ES_00003605	chr1	-	950	7	NNC	ENSMUSG00000062580.10	novel	7280	6	NA	NA	26	9971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1006.50031738141	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGAAAAGTTTCAATCCC	NA	False	NA	NA	False	NA	NA	NA	135241490	135212979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_135213009_135229283_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ES_00003606	chr1	-	964	7	NNC	ENSMUSG00000062580.10	novel	7280	6	NA	NA	26	9971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1006.50031738141	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGAAAAGTTTCAATCCC	NA	False	NA	NA	False	NA	NA	NA	135241490	135212979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_135213009_135229269_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ES_00003608	chr1	-	10348	31	NIC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	0	848	combination_of_known_junctions	FALSE	canonical	3	17	junction_28	16.8865495455867	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCATTTTGTGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	135615843	135365737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292_135513094_135530282_135530387_135534899_135535643_135615656
ES_00003609	chr1	-	202	1	Intergenic	novelGene_148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGCTATGTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	135412431	135412229	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_135412200_135412400
ES_00003610	chr1	-	205	2	Intergenic	novelGene_149	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	520	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGCTATGTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	135454422	135412229	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_135412381_135454368
ES_00003613	chr1	-	4246	22	FSM	ENSMUSG00000026365.16	ENSMUST00000066859.13	4361	22	113	2	-18	1	multi-exon	FALSE	canonical	1	1	junction_3	2.68361958163912	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTTGCCTATGTACGT	NA	False	NA	NA	False	AATAAA	-12	NA	140111036	140013598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_140014261_140016395_140016579_140026607_140026785_140028545_140028723_140029322_140029497_140030074_140030285_140030445_140030623_140033132_140033310_140036229_140036410_140036495_140036679_140040170_140040345_140046324_140046502_140047608_140047792_140063884_140064062_140064433_140064629_140071668_140071843_140075392_140075564_140082206_140082399_140084997_140085075_140090283_140090390_140090688_140090875_140110902
ES_00003614	chr1	-	377	1	FSM	ENSMUSG00000100441.2	ENSMUST00000187999.2	405	1	-3	31	-3	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGCCAGGCTATGCAGCG	NA	False	NA	NA	False	NA	NA	NA	144188177	144187800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_144187800_144188200
ES_00003616	chr1	-	2857	18	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	66	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_14	42.2765651215601	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTTGCTTTTCCGTTTA	NA	False	NA	-2	True	AATAAA	-16	NA	151304121	151243451	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ES_00003617	chr1	-	241	1	FSM	ENSMUSG00000100551.2	ENSMUST00000187109.2	241	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCATGCCAGCTGGTACA	NA	False	NA	NA	False	NA	NA	NA	151396438	151396197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_151396200_151396400
ES_00003619	chr1	-	5658	23	NNC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	0	19584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.698286335647	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTCTCAGGTATCTAATG	NA	False	NA	NA	False	NA	NA	NA	152778373	152693161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_152693194_152712748_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ES_00003620	chr1	-	5822	23	NNC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	0	19584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.6214191492516	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTCTCAGGTATCTAATG	NA	False	NA	NA	False	NA	NA	NA	152778397	152693161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_152693193_152712745_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ES_00003621	chr1	-	6426	25	NNC	ENSMUSG00000042772.16	novel	5792	23	NA	NA	-455	19584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.9681893848683	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTCTCAGGTATCTAATG	NA	False	NA	NA	False	NA	NA	NA	152778852	152693161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_152693193_152712745_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152753791_152753929_152778259
ES_00003623	chr1	-	2322	7	NNC	ENSMUSG00000026479.14	novel	4916	23	NA	NA	-4583	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	44.5570794973519	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGTTTCTGATTTTAT	NA	False	NA	-2	True	AATAAA	-18	NA	153007563	152998502	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007492
ES_00003624	chr1	-	579	2	NNC	ENSMUSG00000073538.11	novel	766	4	NA	NA	-28	-7294	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTCTCTGTTGTCATCT	NA	False	NA	NA	False	AGTAAA	-1	NA	153290007	153289286	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_153289749_153289890
ES_00003625	chr1	-	2082	1	FSM	ENSMUSG00000033671.19	ENSMUST00000192899.2	3207	1	-46	1171	25	-1171	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGATGTTCTAGAATTAG	NA	False	NA	NA	False	AATGAA	-39	NA	155848976	155846894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_155846900_155849000
ES_00003627	chr1	-	3212	18	FSM	ENSMUSG00000060985.16	ENSMUST00000167528.9	3210	18	0	-2	0	0	multi-exon	TRUE	canonical	2	2	junction_17	3.94424814452711	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGTGATCTATATTTA	NA	False	NA	NA	False	GATAAA	-19	NA	156130918	156082865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128361_156129314_156129477_156129936_156130173_156130880
ES_00003628	chr1	-	239	2	Intergenic	novelGene_174	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCACATTCTTCACCAAAA	NA	False	NA	NA	False	NA	NA	NA	156350537	156325767	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_156325784_156350314
ES_00003629	chr1	-	2902	19	NIC	ENSMUSG00000026594.15	novel	2947	20	NA	NA	-13	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_13	76.2322636728791	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTCTTGTATGACTTC	NA	False	NA	-32	True	AATAAA	-37	NA	156767150	156635686	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ES_00003630	chr1	-	2154	19	NIC	ENSMUSG00000026594.15	novel	2958	20	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	2	13	junction_18	61.6571814527015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTTTTAACTTTGT	NA	False	NA	-9	True	AATAAA	-13	NA	156767163	156636402	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735289_156767058
ES_00003631	chr1	-	3704	1	ISM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	273709	1	42555	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTACTATCTTTTAC	NA	False	NA	3	True	AATAAA	-27	NA	156966456	156962752	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr1_-_156962800_156966500
ES_00003633	chr1	-	8358	27	NIC	ENSMUSG00000026721.17	novel	6338	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_7	11.0034959479669	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTCTAATTTTTTTCA	NA	False	NA	-9	True	AATAAA	-17	NA	160620507	160046743	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_160051939_160054054_160054253_160059365_160059438_160064195_160064280_160066100_160066206_160075028_160075140_160085012_160085106_160169605_160169735_160219751_160219794_160269392_160269537_160270760_160270887_160281320_160281396_160299567_160299682_160454784_160454936_160472877_160472972_160509610_160509753_160528281_160528449_160529927_160530031_160537716_160537784_160549702_160549814_160551601_160551760_160561098_160561274_160563117_160563329_160566465_160566659_160568321_160568370_160568453_160568502_160620305
ES_00003634	chr1	-	427	1	FSM	ENSMUSG00000103632.2	ENSMUST00000193473.2	427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATTTTAGATTATTTT	NA	False	NA	NA	False	AATAAA	-22	NA	160555730	160555303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160555300_160555700
ES_00003635	chr1	-	218	2	Antisense	novelGene_ENSMUSG00000040423.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	89	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAAAATTGCAAAGTTAT	2903	False	NA	NA	False	AAAAAG	-13	NA	160790301	160750238	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr1_-_160750405_160790249
ES_00003636	chr1	-	214	1	Intergenic	novelGene_181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTTATATCAAAATTGCA	NA	False	NA	NA	False	AAAAAG	-6	NA	160750459	160750245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_160750200_160750500
ES_00003637	chr1	-	3883	4	FSM	ENSMUSG00000043467.20	ENSMUST00000172044.8	3883	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	1.69967317119759	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATAAGTCTACCCTA	NA	False	NA	NA	False	NA	NA	NA	160861829	160845325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_160847977_160857211_160857312_160859374_160860335_160861657
ES_00003638	chr1	-	5586	24	NIC	ENSMUSG00000040297.13	novel	6327	24	NA	NA	0	-729	combination_of_known_junctions	FALSE	canonical	3	62	junction_17	27.0440374610156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTCTTCTGTCCTT	418	False	NA	-2	True	AATAAA	-23	NA	161704251	161644411	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680505_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ES_00003639	chr1	-	5737	23	NIC	ENSMUSG00000040297.13	novel	6327	24	NA	NA	-160	-729	combination_of_known_junctions	FALSE	canonical	3	57	junction_12	27.3306959689789	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTCTTCTGTCCTT	258	False	NA	-2	True	AATAAA	-23	NA	161704411	161644411	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ES_00003640	chr1	-	10191	35	NIC	ENSMUSG00000040225.16	novel	11289	35	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_31	42.2959686251269	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCTTGGAACTTCTAAT	3480	False	NA	NA	False	AATAAA	-16	NA	162568059	162499356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_162501226_162501667_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507053_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162549013_162549109_162550678_162550857_162552272_162552439_162567893
ES_00003641	chr1	-	2475	5	NIC	ENSMUSG00000040124.6	novel	2538	5	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	29.2179311382582	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231171	163212476	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_163214267_163219978_163220120_163222159_163222262_163224376_163224739_163231091
ES_00003647	chr1	-	3337	8	FSM	ENSMUSG00000052534.16	ENSMUST00000188912.7	3970	8	0	633	0	-633	multi-exon	FALSE	canonical	0	0	junction_1	1.29362644830535	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCATTGCGAGGATCGTT	NA	False	NA	NA	False	NA	NA	NA	168259839	167947565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_167949050_168011098_168011189_168018846_168019007_168023316_168023453_168030915_168031107_168036919_168037165_168255437_168255512_168258882
ES_00003648	chr1	-	6874	9	FSM	ENSMUSG00000052534.16	ENSMUST00000176540.8	6876	9	0	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_7	1.22474487139159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATACACACTTGTATT	NA	False	NA	NA	False	AATAAA	-24	NA	168259466	167981112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_167986394_168011098_168011189_168012524_168012638_168018846_168019007_168023316_168023453_168030915_168031107_168036919_168037165_168255437_168255512_168258882
ES_00003649	chr1	-	1828	8	FSM	ENSMUSG00000052534.16	ENSMUST00000176790.8	1828	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.1780301787479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTGGTTTGAGGAGGC	NA	False	NA	NA	False	AATAAA	-19	NA	168259319	167985898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_167986394_168011098_168011189_168018846_168019007_168023316_168023453_168030915_168031107_168036919_168037165_168255437_168255512_168258882
ES_00003651	chr1	-	2215	14	NNC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	0	10352	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.231050558368	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGGGAACAAAGTCACAGA	NA	False	NA	NA	False	NA	NA	NA	171115532	171099166	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_171099199_171109522_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ES_00003652	chr1	-	1112	8	NNC	ENSMUSG00000062963.11	novel	1007	7	NA	NA	-76	16969	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	224.005648616826	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGGGAACAAAGTCACAGA	7207	False	NA	NA	False	NA	NA	NA	171122673	171099166	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_171099199_171116138_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
ES_00003654	chr1	-	607	2	Intergenic	novelGene_208	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTTTTAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	171870305	171865562	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_-_171866052_171870187
ES_00003656	chr1	-	6688	18	NNC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	-157	-1	at_least_one_novel_splicesite	FALSE	non_canonical	3	8	junction_9	15.2633174025665	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGATTTCATGTCTTTT	NA	False	NA	-1	True	AATAAA	-26	NA	176641790	176561219	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570066_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610119_176616029_176616112_176620101_176620192_176621070_176621216_176641461
ES_00003657	chr1	-	6889	20	NNC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	18	junction_7	15.0340334130539	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATGATCATAGATTTCA	NA	False	NA	-9	True	AATAAA	-18	NA	176641633	176561227	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570036_176570215_176577491_176577619_176582731_176584550_176585962_176586084_176588916_176589067_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610119_176616029_176616112_176620101_176620192_176621070_176621216_176641461
ES_00003659	chr1	-	1526	8	NNC	ENSMUSG00000055067.16	novel	3210	8	NA	NA	18265	463	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	127.340776930988	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCCTCCATGGATCACC	NA	False	NA	NA	False	NA	NA	NA	179058140	178784351	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899_178921968_179058044
ES_00003660	chr1	-	2048	6	FSM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	7	-826	0	826	multi-exon	FALSE	canonical	2	9	junction_1	165.062412438447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTTTTTTCCTTTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	179345599	179221962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_179223397_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
ES_00003662	chr1	-	606	1	FSM	ENSMUSG00000055676.5	ENSMUST00000192714.2	1011	1	405	0	405	0	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAACCCTGGATAACCC	NA	False	NA	NA	False	NA	NA	NA	180155344	180154738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_180154700_180155300
ES_00003664	chr1	-	888	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	0	0	0	0	multi-exon	TRUE	canonical	1	55	junction_1	1176.16816635869	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGTAGATTCCATC	NA	False	NA	NA	False	AGTAAA	-42	NA	180641112	180630261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
ES_00003665	chr1	-	4925	3	NNC	ENSMUSG00000038733.15	novel	751	6	NA	NA	2082	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGTTGCGTTCCATCTCA	8296	False	NA	0	True	AATAAA	-22	NA	181009222	181000789	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_181001690_181001725_181005397_181008868
ES_00003666	chr1	-	6955	15	NNC	ENSMUSG00000038733.15	novel	6452	14	NA	NA	10	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	42.8588690128569	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTTGCGTTCCATCTC	NA	False	NA	-1	True	AATAAA	-21	NA	181039533	181000790	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_181001680_181001713_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ES_00003668	chr1	-	3385	15	FSM	ENSMUSG00000022995.17	ENSMUST00000111025.8	3385	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	105.627377403507	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	5643	False	NA	NA	False	ACTAAA	-44	NA	181847545	181732009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747022_181747123_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
ES_00003669	chr1	-	427	1	FSM	ENSMUSG00000022995.17	ENSMUST00000192768.2	1890	1	1431	32	1431	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCAAGGCGGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	181738731	181738304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181738300_181738700
ES_00003670	chr1	-	251	1	FSM	ENSMUSG00000022995.17	ENSMUST00000195461.2	5962	1	570	5141	570	-5141	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGGAAAGTGAACAGAA	NA	False	NA	NA	False	NA	NA	NA	181767580	181767329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181767300_181767600
ES_00003672	chr1	-	383	1	FSM	ENSMUSG00000102760.2	ENSMUST00000191734.2	1627	1	95	1149	95	-1149	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAAGCTCAGATTGGCT	7886	False	NA	NA	False	CATAAA	-11	NA	181835156	181834773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_181834800_181835200
ES_00003673	chr1	-	344	1	FSM	ENSMUSG00000102478.2	ENSMUST00000195236.2	867	1	76	447	76	-447	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAAATCCTTACTTTGA	NA	False	NA	NA	False	ATTAAA	-28	NA	182987904	182987560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_182987600_182987900
ES_00003675	chr1	-	6390	29	NNC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	13	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	45.1999525916313	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTGTCTGCTGATTCTT	4056	False	NA	0	True	CATAAA	-19	NA	183150881	183107680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_183108509_183109058_183109201_183110440_183110513_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604_183140360_183143388_183143476_183146987_183147122_183150737
ES_00003677	chr1	-	1066	1	FSM	ENSMUSG00000044854.8	ENSMUST00000050306.8	967	1	-104	5	-104	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGGCAGGTTCAGATGTC	NA	False	NA	NA	False	AATAAA	-13	NA	183766299	183765233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_183765200_183766300
ES_00003678	chr1	-	4522	18	NNC	ENSMUSG00000026620.12	novel	4221	18	NA	NA	-290	8	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	12.8795323261824	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTTTGCTGCTTGGA	2966	False	NA	2	True	AATAAA	-34	NA	184732057	184628977	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_184631076_184633005_184633051_184637599_184637855_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012_184658084_184660230_184660297_184661518_184661568_184675402_184675457_184676993_184677198_184731618
ES_00003679	chr1	-	2418	13	FSM	ENSMUSG00000026618.12	ENSMUST00000110974.4	2431	13	0	13	0	-13	multi-exon	FALSE	canonical	1	1	junction_1	99.5902717248137	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTTTGCAAGGACAAACC	NA	False	NA	NA	False	AATAAA	-15	NA	185061593	185044055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_185044725_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
ES_00003680	chr1	-	216	1	Genic_Genomic	ENSMUSG00000026605.15	novel	NA	NA	NA	NA	8064	29	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACAAAGAAAAACAATCCT	NA	False	NA	NA	False	NA	NA	NA	189372989	189372773	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_189372800_189373000
ES_00003681	chr1	-	10494	18	NIC	ENSMUSG00000026605.15	novel	11130	18	NA	NA	0	-997	intron_retention	FALSE	canonical	1	1	junction_16	67.2923693726008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGTAGTAGATGATCTGT	NA	False	NA	-9	True	AATAAA	-24	NA	189420232	189373799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189416729_189417336_189420172
ES_00003682	chr1	-	408	2	FSM	ENSMUSG00000026603.14	ENSMUST00000132289.2	489	2	81	0	81	0	multi-exon	FALSE	canonical	3	363	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTCTCTCCAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	189614488	189612838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_189613064_189614305
ES_00003683	chr1	-	340	1	FSM	ENSMUSG00000093064.5	ENSMUST00000175323.5	313	1	-31	4	-31	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGATGTGAATAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	190215385	190215045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190215000_190215400
ES_00003684	chr1	-	3889	8	FSM	ENSMUSG00000037568.13	ENSMUST00000047409.9	4032	8	37	106	37	-106	multi-exon	FALSE	canonical	1	1	junction_7	1.59078981795143	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTCACGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	190711162	190679950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190682454_190690810_190690927_190692294_190692677_190698399_190698475_190699125_190699183_190702600_190702690_190710377_190710785_190710902
ES_00003685	chr1	-	3775	8	FSM	ENSMUSG00000037568.13	ENSMUST00000166139.7	3897	8	14	108	14	-106	multi-exon	FALSE	canonical	0	0	junction_7	1.82946406783796	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTCACGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	190711479	190679950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190682454_190690810_190690927_190692294_190692677_190698399_190698475_190699125_190699183_190702600_190702690_190710377_190710785_190711333
ES_00003686	chr1	-	3049	5	FSM	ENSMUSG00000066595.10	ENSMUST00000194917.6	3029	5	0	-20	0	20	multi-exon	FALSE	canonical	2	14	junction_1	10.0591997693654	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCCTGGTGTCTGATAT	NA	False	NA	21	True	AATAAA	-40	NA	190744108	190738023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732
ES_00003687	chr1	-	4658	9	NNC	ENSMUSG00000066595.10	novel	3666	9	NA	NA	3949	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	10.8907931299791	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATATGTCCTTTAAA	NA	False	NA	-1	True	AATAAA	-18	NA	190754215	190738045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190752632
ES_00003688	chr1	-	856	1	FSM	ENSMUSG00000103576.2	ENSMUST00000192879.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCAGACATGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	190810877	190810021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_190810000_190810900
ES_00003690	chr1	-	1083	1	FSM	ENSMUSG00000102246.2	ENSMUST00000192556.2	1008	1	-10	-65	-10	65	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTAGCTGCCTTTGTGTT	8607	False	NA	NA	False	CATAAA	-3	NA	191269014	191267931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191267900_191269000
ES_00003691	chr1	-	2915	1	FSM	ENSMUSG00000037474.14	ENSMUST00000192014.2	4693	1	294	1484	292	-1484	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAAGGAGTGCGCTACC	NA	False	NA	NA	False	NA	NA	NA	191307331	191304416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191304400_191307300
ES_00003692	chr1	-	822	2	Genic_Genomic	ENSMUSG00000103653.2	novel	631	1	NA	NA	-78	65330	multi-exon	FALSE	non_canonical	0	0	junction_1	0	193	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGGGTGTTGTCCAG	NA	False	NA	NA	False	NA	NA	NA	191758828	191692789	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr1_-_191692819_191758035
ES_00003694	chr1	-	3791	11	FSM	ENSMUSG00000037395.17	ENSMUST00000110849.10	3791	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	12.5143917151414	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACGAAAAAGTATTTAAT	NA	False	NA	NA	False	AATAAA	-27	NA	191822307	191782845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191785456_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ES_00003696	chr1	-	1624	10	FSM	ENSMUSG00000037395.17	ENSMUST00000192491.6	1623	10	0	-1	0	1	multi-exon	FALSE	canonical	2	7	junction_1	11.5373788665845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGGTTTTTTGTTTCTTG	NA	False	NA	NA	False	AATAAA	-21	NA	191822323	191785682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr1_-_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ES_00003701	chr1	+	575	1	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAACACTTGGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	6080887	6081462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_6080900_6081500
ES_00003708	chr1	+	867	1	Intergenic	novelGene_20	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGCACATGTGACTC	NA	False	NA	NA	False	NA	NA	NA	15934437	15935304	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_15934400_15935300
ES_00003709	chr1	+	233	1	Intergenic	novelGene_26	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTCTGTCTTAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	24355317	24355550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_24355300_24355600
ES_00003710	chr1	+	263	1	Intergenic	novelGene_40	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGATCCCAGCAACCTGG	NA	False	NA	NA	False	NA	NA	NA	38192591	38192854	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_38192600_38192900
ES_00003711	chr1	+	201	1	Intergenic	novelGene_42	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCACCAGCCCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	39570847	39571048	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_39570800_39571000
ES_00003712	chr1	+	229	1	Intergenic	novelGene_43	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	4001	False	NA	NA	False	NA	NA	NA	40014055	40014284	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_40014100_40014300
ES_00003713	chr1	+	207	1	Intergenic	novelGene_44	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	43160574	43160781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_43160600_43160800
ES_00003714	chr1	+	2321	1	Intergenic	novelGene_50	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAAGGTAGCTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	44859953	44862274	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_44860000_44862300
ES_00003716	chr1	+	206	1	Intergenic	novelGene_60	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGACTCTTCTAACCCC	NA	False	NA	NA	False	NA	NA	NA	52201345	52201551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_52201300_52201600
ES_00003717	chr1	+	300	1	Intergenic	novelGene_67	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAAAGATCAGAGTCCAC	NA	False	NA	NA	False	NA	NA	NA	55215002	55215302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_55215000_55215300
ES_00003718	chr1	+	203	1	Intergenic	novelGene_70	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAACTTGTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	58614406	58614609	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_58614400_58614600
ES_00003719	chr1	+	208	1	Intergenic	novelGene_74	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTTTACCTCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	60513745	60513953	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_60513700_60514000
ES_00003720	chr1	+	206	1	Intergenic	novelGene_78	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTTTTTTTGTAATT	NA	False	NA	NA	False	NA	NA	NA	63221250	63221456	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_63221200_63221500
ES_00003721	chr1	+	203	1	Intergenic	novelGene_85	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAGCCATCTCACCAGC	NA	False	NA	NA	False	NA	NA	NA	74212970	74213173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_74213000_74213200
ES_00003722	chr1	+	1806	1	Intergenic	novelGene_94	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCAGACACACCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	84881341	84883147	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_84881300_84883100
ES_00003723	chr1	+	298	1	Intergenic	novelGene_95	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTTGGAATAAGCCACAT	1049	False	NA	NA	False	NA	NA	NA	84883201	84883499	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_84883200_84883500
ES_00003724	chr1	+	201	1	Intergenic	novelGene_98	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAACATACAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	85977228	85977429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_85977200_85977400
ES_00003726	chr1	+	208	1	Intergenic	novelGene_124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTACTAATGTAAAAGATTA	NA	False	NA	NA	False	AATATA	-11	NA	107488425	107488633	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_107488400_107488600
ES_00003727	chr1	+	229	1	Intergenic	novelGene_132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGGACAACTTTTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	120288557	120288786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_120288600_120288800
ES_00003728	chr1	+	201	1	Intergenic	novelGene_137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTGGTGCTCTTAACCA	4176	False	NA	NA	False	NA	NA	NA	132021935	132022136	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_132021900_132022100
ES_00003729	chr1	+	5371	1	Intergenic	novelGene_145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTACATTCTTTTCTCTC	2305	False	NA	NA	False	NA	NA	NA	134327852	134333223	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_134327900_134333200
ES_00003730	chr1	+	5136	1	Intergenic	novelGene_162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAAGGCTCAAATTTTAT	NA	False	NA	NA	False	NA	NA	NA	152953786	152958922	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_152953800_152958900
ES_00003731	chr1	+	200	1	Intergenic	novelGene_168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAGAAAGCAAACTG	NA	False	NA	NA	False	NA	NA	NA	153971685	153971885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_153971700_153971900
ES_00003732	chr1	+	209	1	Intergenic	novelGene_170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGAGTCTGATCAGAGG	NA	False	NA	NA	False	NA	NA	NA	155958010	155958219	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_155958000_155958200
ES_00003733	chr1	+	217	1	Intergenic	novelGene_172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGCTGAGACATGACTGA	NA	False	NA	NA	False	NA	NA	NA	156163839	156164056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_156163800_156164100
ES_00003734	chr1	+	213	1	Intergenic	novelGene_176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACAAAAACACCTTAACCT	NA	False	NA	NA	False	NA	NA	NA	156423855	156424068	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_156423900_156424100
ES_00003735	chr1	+	202	1	Intergenic	novelGene_194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGGAGAAGACCATG	9977	False	NA	NA	False	NA	NA	NA	170640887	170641089	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_170640900_170641100
ES_00003736	chr1	+	219	1	Intergenic	novelGene_204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCTTTAATCCCAGCAC	4176	False	NA	NA	False	NA	NA	NA	171292251	171292470	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171292300_171292500
ES_00003737	chr1	+	3064	1	Intergenic	novelGene_205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATACCCAGCTCCTCACT	6313	False	NA	NA	False	NA	NA	NA	171688397	171691461	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_171688400_171691500
ES_00003738	chr1	+	535	1	Intergenic	novelGene_215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCAGCTGTCCCTGACC	NA	False	NA	NA	False	NA	NA	NA	179479106	179479641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_179479100_179479600
ES_00003739	chr1	+	264	1	Intergenic	novelGene_217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTCTTGAATTCAGAGAT	NA	False	NA	NA	False	NA	NA	NA	180610104	180610368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_180610100_180610400
ES_00003740	chr1	+	202	1	Intergenic	novelGene_218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTCCCTTAAGTACTGG	5329	False	NA	NA	False	NA	NA	NA	180646681	180646883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_180646700_180646900
ES_00003741	chr1	+	235	1	Intergenic	novelGene_224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTACTCTTGACTGTGTC	NA	False	NA	NA	False	NA	NA	NA	181930656	181930891	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_181930700_181930900
ES_00003743	chr1	+	202	1	Intergenic	novelGene_227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTTTGAGACAGTC	NA	False	NA	NA	False	NA	NA	NA	190743029	190743231	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_+_190743000_190743200
ES_00003744	chr10	+	801	1	Intergenic	novelGene_234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACAGGCCCTCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	3195234	3196035	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_3195200_3196000
ES_00003745	chr10	+	722	1	Intergenic	novelGene_235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCGGTATGAATTTCCT	NA	False	NA	NA	False	NA	NA	NA	3203799	3204521	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_3203800_3204500
ES_00003746	chr10	+	1948	4	FSM	ENSMUSG00000040653.7	ENSMUST00000043374.7	2617	4	501	168	14	-168	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGCAATTTATATCAAGG	NA	False	NA	NA	False	AAAACA	-5	NA	3316557	3414807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_3316970_3373493_3373578_3375733_3375767_3413388
ES_00003747	chr10	+	4463	16	NIC	ENSMUSG00000040624.19	novel	4478	16	NA	NA	0	-2316	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	9.13503633757901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAAGTATTTGAGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	3784963	3911210	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_3785077_3822926_3823442_3853556_3853658_3869135_3869206_3880206_3880254_3883596_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3910088
ES_00003748	chr10	+	3669	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923117	4106111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
ES_00003749	chr10	+	3535	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923143	4106111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
ES_00003750	chr10	+	6519	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-23920	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	629.221550807027	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4192459	4309470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4192703_4207397_4207470_4216370_4216669_4263742_4263858_4303141_4307940_4308477
ES_00003752	chr10	+	6502	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-23920	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	634.721797325411	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4192459	4309470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4192703_4207397_4207470_4216387_4216669_4263742_4263858_4303141_4307940_4308477
ES_00003753	chr10	+	6553	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-23920	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	642.148456355693	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4192459	4309470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4192703_4207397_4207470_4216336_4216669_4263742_4263858_4303141_4307940_4308477
ES_00003754	chr10	+	6396	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-12499	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	627.571382394067	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4203880	4309470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4203967_4207397_4207470_4216336_4216669_4263742_4263858_4303141_4307940_4308477
ES_00003757	chr10	+	7367	4	FSM	ENSMUSG00000038587.11	ENSMUST00000045730.7	6195	4	-1172	0	-1172	0	multi-exon	FALSE	canonical	3	1052	junction_2	280.358104335628	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4215207	4309470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_4216669_4263742_4263858_4303141_4307940_4308477
ES_00003758	chr10	+	5956	3	FSM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	774.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4284544	4309470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_4284710_4303141_4307940_4308477
ES_00003759	chr10	+	5029	1	FSM	ENSMUSG00000095123.2	ENSMUST00000178920.2	4838	1	-166	-25	-166	25	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTGTATGAGAGAGAG	222	False	NA	NA	False	AATAAA	-43	NA	4341420	4346449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_4341400_4346400
ES_00003760	chr10	+	2429	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382466	4405141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ES_00003761	chr10	+	632	1	FSM	ENSMUSG00000112474.2	ENSMUST00000217912.2	553	1	-37	-42	-37	42	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCTAGTTAACCATAATT	NA	False	NA	NA	False	AATAAA	-41	NA	7408318	7408950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_7408300_7409000
ES_00003769	chr10	+	1556	9	FSM	ENSMUSG00000015757.11	ENSMUST00000138151.8	1548	9	-8	0	-8	0	multi-exon	FALSE	canonical	3	222	junction_8	31.4779188479798	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGGAAAGGAAAAGGTAT	1131	False	NA	12	True	NA	NA	NA	7668663	7683130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034
ES_00003774	chr10	+	211	1	Intergenic	novelGene_240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCTTTATTACAGTGGAA	NA	False	NA	NA	False	NA	NA	NA	11086555	11086766	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_11086600_11086800
ES_00003775	chr10	+	5060	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_2	70.5	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAATTTTTGTTTTGTTTT	7592	False	NA	NA	False	AATAAA	-25	NA	11157073	11173796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_11157245_11165263_11167317_11170960
ES_00003782	chr10	+	5260	6	FSM	ENSMUSG00000019817.19	ENSMUST00000121646.8	5260	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	38.4416440855487	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTCTTTTCATTTA	3010	False	NA	18	True	AATAAA	-18	NA	12966531	13007438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_12966769_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
ES_00003795	chr10	+	1990	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	17	0	17	0	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCCCTCATATTCA	NA	False	NA	38	True	AATGAA	-24	NA	13376761	13391287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
ES_00003796	chr10	+	5724	7	FSM	ENSMUSG00000019810.16	ENSMUST00000121465.3	5741	7	17	0	17	0	multi-exon	FALSE	canonical	3	139	junction_3	15.7418409201578	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTAGCCCTTGACCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	13376761	13394779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450
ES_00003798	chr10	+	468	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	7726	False	NA	NA	False	NA	NA	NA	14398821	14399289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_14398800_14399300
ES_00003808	chr10	+	3016	20	NIC	ENSMUSG00000019854.18	novel	2595	20	NA	NA	-345	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_9	57.6845946971456	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCTCTGGAGAATACAT	NA	False	NA	2	True	AATAAA	-13	NA	17931263	18000880	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983418_17983497_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ES_00003813	chr10	+	1937	1	FSM	ENSMUSG00000045591.7	ENSMUST00000053225.7	2072	1	9	126	9	-126	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGTTAGGGCCTCAAAG	NA	False	NA	NA	False	GGGGCT	-34	NA	19232289	19234226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_19232300_19234200
ES_00003819	chr10	+	631	4	FSM	ENSMUSG00000019996.18	ENSMUST00000215812.2	628	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	249	junction_1	7.07106781186548	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGCTACGGACCCGGCC	NA	False	NA	NA	False	NA	NA	NA	20137507	20145144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_20137730_20142481_20142598_20142868_20143123_20145105
ES_00003820	chr10	+	776	4	FSM	ENSMUSG00000019996.18	ENSMUST00000216308.2	776	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_1	20.8486610281492	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTCTCACTGGAGAGCC	3361	False	NA	NA	False	AAGAAA	-17	NA	20145246	20150383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_20145335_20149025_20149627_20149991_20150043_20150347
ES_00003823	chr10	+	5452	13	FSM	ENSMUSG00000037608.17	ENSMUST00000043881.12	5437	13	-15	0	0	0	multi-exon	FALSE	canonical	3	695	junction_11	110.864375352149	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATAGCTGGTCTCTGTTTGC	2790	False	NA	14	True	AATAAA	-15	NA	20188214	20218245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ES_00003826	chr10	+	2997	12	NIC	ENSMUSG00000037608.17	novel	3164	13	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	221	junction_3	266.237450718882	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGTATCATATTTGTAACTA	2852	False	NA	5	True	AATAAA	-13	NA	20188276	20216005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
ES_00003827	chr10	+	3165	13	FSM	ENSMUSG00000037608.17	ENSMUST00000190156.7	3164	13	-1	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	383.38271421069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATATTTGTAACTATCA	2849	False	NA	8	True	AATAAA	-16	NA	20188273	20216008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20208141_20208304_20209137_20209319_20215454_20215668_20215797
ES_00003828	chr10	+	3151	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	-9	0	0	0	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATATTTGTAACTATCAA	2849	False	NA	9	True	AATAAA	-17	NA	20188273	20216009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ES_00003839	chr10	+	969	6	FSM	ENSMUSG00000019977.17	ENSMUST00000218785.2	948	6	-21	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	524.818216147268	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATCTCATGGACTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	21171907	21213075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997_21185214_21212865
ES_00003840	chr10	+	2757	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	-24	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171907	21244782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ES_00003841	chr10	+	926	5	FSM	ENSMUSG00000019977.17	ENSMUST00000219345.2	926	5	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_2	60.6233247191211	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGTGAGTGCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	21220570	21228503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440
ES_00003842	chr10	+	2602	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21854570	21875797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ES_00003843	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ES_00003844	chr10	+	2923	12	FSM	ENSMUSG00000019970.16	ENSMUST00000092673.11	2576	12	-347	0	-347	0	multi-exon	FALSE	canonical	3	12	junction_1	274.769775907151	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	6	True	AATAAA	-12	NA	21869441	21875790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21870081_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ES_00003845	chr10	+	2678	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	-234	12	-234	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	6	True	AATAAA	-12	NA	21870330	21875790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ES_00003848	chr10	+	1433	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	48	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034515	22059816	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ES_00003849	chr10	+	2548	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	-41	-1233	-41	1230	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCACTTTACTCATGATAT	NA	False	NA	NA	False	NA	NA	NA	22049378	22061046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ES_00003851	chr10	+	1458	8	FSM	ENSMUSG00000078452.11	ENSMUST00000182677.8	1425	8	2	-35	2	35	multi-exon	FALSE	canonical	3	14	junction_6	16.7879937661972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTGAAATTATATGCTAG	NA	False	NA	NA	False	NA	NA	NA	22236452	22250073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_22236551_22237474_22237545_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ES_00003853	chr10	+	4171	5	FSM	ENSMUSG00000037490.6	ENSMUST00000042261.5	4167	5	-4	0	-4	0	multi-exon	FALSE	canonical	1	2	junction_1	0.82915619758885	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	TTTAAA	-19	NA	22520905	22580184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_22521213_22540261_22541606_22568033_22568157_22569892_22570026_22577920
ES_00003854	chr10	+	327	1	FSM	ENSMUSG00000112727.2	ENSMUST00000220252.2	955	1	266	362	266	-362	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGTGGCGTGATGGTC	NA	False	NA	NA	False	NA	NA	NA	22667483	22667810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_22667500_22667800
ES_00003857	chr10	+	2614	13	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.1336695460678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672949	23703866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ES_00003858	chr10	+	2412	7	FSM	ENSMUSG00000037440.9	ENSMUST00000041416.8	2416	7	0	4	0	-4	multi-exon	FALSE	canonical	0	0	junction_4	1.59861050777091	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCAGTCTTTGGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	23770585	23781237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_23770990_23773190_23773322_23774305_23774499_23775291_23775584_23776482_23776842_23779283_23779455_23780375
ES_00003861	chr10	+	4808	29	FSM	ENSMUSG00000019984.17	ENSMUST00000020159.15	4798	29	-10	0	0	0	multi-exon	FALSE	canonical	2	39	junction_7	9.84419439392103	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGACTGCTTTGTAAC	NA	False	NA	13	True	AATAAA	-20	NA	24745934	24789358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
ES_00003863	chr10	+	4115	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25235753	25399411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ES_00003864	chr10	+	4286	20	FSM	ENSMUSG00000019978.17	ENSMUST00000092645.7	4280	20	-6	0	-6	0	multi-exon	FALSE	canonical	1	1	junction_1	134.289285456308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	25284259	25399417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_25284341_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25369464_25369528_25371342_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ES_00003873	chr10	+	5514	31	NIC	ENSMUSG00000019889.11	novel	6177	32	NA	NA	4	-604	combination_of_known_splicesites	FALSE	canonical	3	10	junction_16	47.0358728348197	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCAATTGTCTTTGAATA	NA	False	NA	NA	False	ATTAAA	-16	NA	27950856	28472789	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28438102_28438139_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ES_00003874	chr10	+	6592	30	NIC	ENSMUSG00000019889.11	novel	4754	34	NA	NA	-546	-77	combination_of_known_splicesites	FALSE	canonical	3	130	junction_6	25.8465700684714	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACTGATTGAACATCA	NA	False	NA	17	True	AATAAA	-17	NA	27950269	28473316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ES_00003875	chr10	+	2164	3	FSM	ENSMUSG00000019889.11	ENSMUST00000219761.2	1464	3	-702	2	-512	-2	multi-exon	FALSE	canonical	3	159	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCCTGTGTTGATTAT	NA	False	NA	NA	False	NA	NA	NA	27950303	28140667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_27951174_28082129_28082253_28139496
ES_00003876	chr10	+	1235	1	FSM	ENSMUSG00000095478.3	ENSMUST00000178707.3	561	1	-54	-620	-54	620	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCTTATATGAAGGAGCA	NA	False	NA	NA	False	AATAAA	-38	NA	28906069	28907304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_28906100_28907300
ES_00003877	chr10	+	3856	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTTCCGTGTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	29189495	29223465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ES_00003890	chr10	+	3525	4	FSM	ENSMUSG00000019845.9	ENSMUST00000214493.2	3525	4	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	3.55902608401044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCAGGGTAGTTTTTG	NA	False	NA	-89	True	AATATA	-13	NA	39019139	39026093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39021710_39023307_39023449_39023758_39023934_39025454
ES_00003893	chr10	+	3528	14	FSM	ENSMUSG00000019843.15	ENSMUST00000099967.10	3528	14	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_9	15.9414609592343	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATTTTTGTTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	39245793	39441368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ES_00003897	chr10	+	10804	33	FSM	ENSMUSG00000019841.16	ENSMUST00000131186.8	10789	33	-15	0	-6	0	multi-exon	FALSE	canonical	3	21	junction_2	18.85944619912	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGGAAACCAAATTAAAA	NA	False	NA	-25	True	TTTAAA	-29	NA	39608107	39751164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39608610_39618686_39618815_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ES_00003898	chr10	+	10719	32	FSM	ENSMUSG00000019841.16	ENSMUST00000019986.13	10713	32	-6	0	-6	0	multi-exon	FALSE	canonical	3	30	junction_10	17.5666413596239	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGACTTTTATCTTAA	NA	False	NA	18	True	AATAAA	-14	NA	39608107	39751207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39608610_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ES_00003905	chr10	+	2734	9	FSM	ENSMUSG00000019831.15	ENSMUST00000105509.2	2719	9	-16	1	-16	0	multi-exon	FALSE	canonical	3	202	junction_5	32.5209067370515	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTCGCTCTTCGAG	NA	False	NA	17	True	AATAAA	-19	NA	40759806	40814565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_40760067_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
ES_00003911	chr10	+	3321	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	71	junction_2	35.4241128130973	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9127	False	NA	29	True	AATAAA	-18	NA	41352343	41363026	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ES_00003916	chr10	+	2603	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	-3	0	-3	0	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	NA	False	NA	8	True	AATAAA	-15	NA	41763431	41784420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
ES_00003918	chr10	+	1072	3	FSM	ENSMUSG00000019804.13	ENSMUST00000105499.2	1057	3	0	-15	0	15	multi-exon	FALSE	canonical	3	200	junction_1	903	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGAGCCTGGCGTCCGTG	NA	False	NA	38	True	AATAAA	-39	NA	42378285	42411392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_42378489_42409144_42409270_42410648
ES_00003919	chr10	+	1178	5	NNC	ENSMUSG00000019804.13	novel	1401	4	NA	NA	0	18747	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	948.274057169129	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	42378285	42430124	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648_42411366_42430087
ES_00003925	chr10	+	478	2	FSM	ENSMUSG00000045886.8	ENSMUST00000216543.2	456	2	-22	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTGGTCATGGTGT	NA	False	NA	NA	False	AATAAA	-45	NA	43400079	43400641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_43400172_43400255
ES_00003928	chr10	+	2995	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	-14	0	-14	0	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGGTTTTTGGTCACTG	NA	False	NA	8	True	NA	NA	NA	43777788	43823858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
ES_00003936	chr10	+	257	1	FSM	ENSMUSG00000112702.2	ENSMUST00000217715.2	412	1	78	77	78	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTTTCGACCCCAGA	NA	False	NA	NA	False	NA	NA	NA	47516296	47516553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_47516300_47516600
ES_00003940	chr10	+	3048	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	-24	0	-24	0	multi-exon	FALSE	canonical	3	170	junction_2	11.5134703716994	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	6	True	AATAAA	-16	NA	52109690	52197472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ES_00003941	chr10	+	2859	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	-64	0	-46	0	multi-exon	TRUE	canonical	3	38	junction_1	48.9166587797331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGACTTCTATTTGGC	NA	False	NA	8	True	AATAAA	-18	NA	52109668	52197474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ES_00003944	chr10	+	4916	8	FSM	ENSMUSG00000038602.8	ENSMUST00000105473.3	4941	8	24	1	24	-1	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCCGCCTCTCTCGTGT	NA	False	NA	NA	False	AATAAA	-25	NA	52566652	52987717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_52567266_52809187_52809364_52897939_52898068_52938546_52938707_52949549_52949707_52953992_52954046_52965433_52965589_52984243
ES_00003947	chr10	+	1117	1	FSM	ENSMUSG00000112332.2	ENSMUST00000219458.2	906	1	-320	109	-320	-109	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGATATAAGTTTATTTT	1870	False	NA	NA	False	AATAAA	-17	NA	53490144	53491261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_53490100_53491300
ES_00003954	chr10	+	2621	12	FSM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	-17	0	-6	0	multi-exon	FALSE	canonical	3	174	junction_10	23.7006119808005	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTCCTTCTCATTGTT	NA	False	NA	13	True	NA	NA	NA	57362474	57389231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57387539_57387625_57387998
ES_00003960	chr10	+	4293	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	34	0	34	0	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58159321	58260513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ES_00003961	chr10	+	4329	10	FSM	ENSMUSG00000019920.19	ENSMUST00000238939.2	4351	10	22	0	22	0	multi-exon	FALSE	canonical	2	8	junction_1	82.3939647795806	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58207297	58260513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_58207522_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ES_00003964	chr10	+	2726	4	FSM	ENSMUSG00000038010.10	ENSMUST00000217992.2	2750	4	0	24	0	-24	multi-exon	FALSE	canonical	2	3	junction_3	29.6910012555245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGCTTGCTTTACTC	1200	False	NA	NA	False	NA	NA	NA	58334026	58338170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_58334498_58334990_58335036_58335183_58335242_58336018
ES_00003967	chr10	+	2918	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGGGCTCCGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	59159189	59208073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ES_00003968	chr10	+	630	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTTGGCACCTCAGGA	1502	False	NA	NA	False	NA	NA	NA	59231576	59232206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59231600_59232200
ES_00003970	chr10	+	1510	1	FSM	ENSMUSG00000091941.2	ENSMUST00000032395.8	858	1	-45	-607	-45	607	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTAGCTATTTGGTTT	5393	False	NA	NA	False	NA	NA	NA	59642333	59643843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59642300_59643800
ES_00003971	chr10	+	3089	9	FSM	ENSMUSG00000020109.14	ENSMUST00000146590.8	3070	9	-19	0	0	0	multi-exon	FALSE	canonical	3	91	junction_8	64.4659551623956	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGGTGGGTCTGCA	NA	False	NA	31	True	NA	NA	NA	59715377	59735118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732324_59733312
ES_00003973	chr10	+	2246	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	-8	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	81.8458917722814	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGCGCACCAAGGACTC	NA	False	NA	NA	False	NA	NA	NA	59715439	59734343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
ES_00003975	chr10	+	1560	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	-85	-2	-85	2	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGGTCTGTGCACGGG	NA	False	NA	30	True	AATAAA	-20	NA	59839063	59935812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ES_00003977	chr10	+	2605	14	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_8	249.821972115103	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGATCTGGCCTTGTGTC	7027	False	NA	NA	False	AATAAA	-13	NA	60113486	60138373	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135245_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ES_00003978	chr10	+	812	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	-23	0	5	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	6	True	AATAAA	-17	NA	60925114	60930103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
ES_00003989	chr10	+	671	7	FSM	ENSMUSG00000020088.11	ENSMUST00000220372.2	651	7	-20	0	-20	0	multi-exon	FALSE	canonical	3	24	junction_1	603.300275337433	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGGAAACAAAATTGACAG	NA	False	NA	NA	False	NA	NA	NA	61516057	61525597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61516193_61519839_61519967_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552
ES_00003991	chr10	+	2623	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	-10	0	1	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516078	61529076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ES_00003996	chr10	+	3133	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	-47	0	-11	0	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551054	61574426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
ES_00003997	chr10	+	1526	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	-14	0	-14	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	8	True	AATAAA	-19	NA	61551027	61574432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
ES_00003998	chr10	+	1477	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	-35	0	-11	0	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	False	NA	NA	False	AATAAA	-21	NA	61551054	61575039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
ES_00003999	chr10	+	724	5	ISM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	-14	10340	-14	392	5prime_fragment	FALSE	canonical	3	116	junction_1	28.6050694807756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTGTTTGATTGTTTAG	NA	False	NA	NA	False	AAAAAG	-16	NA	61551027	61564092	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907
ES_00004001	chr10	+	434	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	35	junction_2	15.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACGAGGCAAGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	61670271	61709551	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_61670501_61698165_61698280_61709460
ES_00004004	chr10	+	891	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	11	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGTGGCACACACCTTT	NA	False	NA	NA	False	NA	NA	NA	61751951	61768390	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_61752029_61767321_61767722_61767976
ES_00004010	chr10	+	269	1	Intergenic	novelGene_308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCTAAAAACTTCAGTAAC	NA	False	NA	NA	False	NA	NA	NA	62630319	62630588	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62630300_62630600
ES_00004023	chr10	+	3926	26	FSM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	-12	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	90.360929610092	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTAGTTTCTATGGTTG	NA	False	NA	17	True	AATAAA	-31	NA	63079689	63153657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63139623_63139648_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ES_00004030	chr10	+	8650	26	NIC	ENSMUSG00000037876.18	novel	2015	12	NA	NA	-116	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_5	34.4406736287199	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTCTCCCTCTCT	NA	False	NA	21	True	ATTAAA	-22	NA	66932067	67092105	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67052761_67052887_67053816_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ES_00004034	chr10	+	517	1	FSM	ENSMUSG00000069601.15	ENSMUST00000182367.2	844	1	342	-15	18	15	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	69761666	69762183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_69761700_69762200
ES_00004036	chr10	+	3811	19	FSM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	14	0	0	0	multi-exon	FALSE	canonical	3	13	junction_18	22.7009544586419	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATGCAGATGTATATA	NA	False	NA	15	True	AATAAA	-20	NA	69761648	69851635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851400
ES_00004037	chr10	+	3798	19	ISM	ENSMUSG00000069601.15	ENSMUST00000092433.12	5072	20	305	9147	18	2	5prime_fragment	FALSE	canonical	3	43	junction_16	15.6307705393663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGCAGATGTATATATG	NA	False	NA	17	True	AATAAA	-22	NA	69761666	69851637	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851397
ES_00004038	chr10	+	4822	20	FSM	ENSMUSG00000069601.15	ENSMUST00000092433.12	5072	20	250	0	9	0	multi-exon	FALSE	canonical	3	43	junction_16	15.2197204046814	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGCTTGCCACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	69761611	69860784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851397_69851484_69859661
ES_00004039	chr10	+	3587	18	ISM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-116	19034	19	885	5prime_fragment	FALSE	canonical	3	64	junction_16	12.4850083110085	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTCGGCTTTTTGATA	NA	False	NA	NA	False	ATTAAA	-5	NA	69761667	69841439	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439
ES_00004040	chr10	+	5684	20	FSM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	0	-1933	0	-862	multi-exon	FALSE	canonical	3	64	junction_16	12.5742118370934	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCATTTGCATGATG	NA	False	NA	NA	False	AATAAA	-22	NA	69761783	69862406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
ES_00004042	chr10	+	1687	4	FSM	ENSMUSG00000069601.15	ENSMUST00000182606.8	630	4	0	-1057	0	1057	multi-exon	FALSE	canonical	3	86	junction_1	5.79271573232759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTGGTTCCTTAATTT	NA	False	NA	NA	False	ATTAAA	-38	NA	69817953	69836590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_69818028_69830201_69830277_69833924_69834057_69835184
ES_00004050	chr10	+	1323	5	FSM	ENSMUSG00000060733.14	ENSMUST00000118381.8	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_3	39.274673773311	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTAAAGCTGCT	2289	False	NA	NA	False	AATAAA	-14	NA	71183665	71213246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534
ES_00004052	chr10	+	5328	7	NNC	ENSMUSG00000060733.14	novel	1492	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	80	junction_3	99.4898096400944	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTCCGTTGATTAGCAC	2289	False	NA	4	True	ATTAAA	-17	NA	71183665	71221715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_71183921_71199279_71199366_71201838_71201936_71208534_71208711_71212534_71212617_71217034_71218626_71218674
ES_00004057	chr10	+	2676	8	FSM	ENSMUSG00000019923.15	ENSMUST00000105431.8	2676	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	390.63955932051	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTACGTGTTTAGTTG	NA	False	NA	NA	False	TATAAA	-32	NA	72490726	72505621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72503730
ES_00004059	chr10	+	1139	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	-1	0	0	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490726	72504997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
ES_00004064	chr10	+	3034	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	0	2	0	-2	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTTGATTATTCCAAGA	1402	False	NA	NA	False	AATAAA	-15	NA	75353384	75373213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
ES_00004066	chr10	+	442	4	FSM	ENSMUSG00000020180.11	ENSMUST00000220229.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1763.59254553501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTGATAAACTGTTAAG	1894	False	NA	-15	True	NA	NA	NA	75353876	75371252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75353960_75355147_75355295_75368010_75368065_75371094
ES_00004068	chr10	+	2317	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75399885	75422034	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00004069	chr10	+	2286	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-103	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	118.335393294324	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75399878	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75400093_75400671_75400740_75409444_75409583_75410065_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00004071	chr10	+	2285	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-99	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	109.844161410238	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75399882	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75400093_75400671_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00004072	chr10	+	2296	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	105.112985857687	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75399885	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410065_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00004074	chr10	+	2162	14	FSM	ENSMUSG00000006345.11	ENSMUST00000134503.8	2140	14	-22	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	59.3897965057474	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75404467	75422034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75404605_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00004075	chr10	+	2146	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	89.9111987943607	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75404470	75422025	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_75404601_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00004077	chr10	+	829	3	FSM	ENSMUSG00000006345.11	ENSMUST00000156487.2	820	3	0	-9	0	0	multi-exon	FALSE	canonical	3	347	junction_1	12.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75420938	75422034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75421334_75421424_75421539_75421714
ES_00004079	chr10	+	659	4	NNC	ENSMUSG00000049422.8	novel	939	4	NA	NA	268	-1	at_least_one_novel_splicesite	FALSE	canonical	3	841	junction_2	7249.94865882204	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCTGTGTGCCCATTT	7214	False	NA	22	True	ATTAAA	-19	NA	75771674	75773580	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75771839_75772071_75772280_75773173_75773289_75773408
ES_00004080	chr10	+	716	5	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	268	28849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7289.49097588439	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTAAATATTGCATGTG	7214	False	NA	NA	False	NA	NA	NA	75771674	75802430	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408_75773578_75802403
ES_00004081	chr10	+	407	2	FSM	ENSMUSG00000049422.8	ENSMUST00000219435.2	405	2	0	-2	0	-1	multi-exon	FALSE	canonical	3	16591	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCTGTGTGCCCATTT	8593	False	NA	22	True	ATTAAA	-19	NA	75773053	75773580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75773289_75773408
ES_00004083	chr10	+	224	1	Intergenic	novelGene_336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAAAGATTTTTATCATT	NA	False	NA	NA	False	NA	NA	NA	75806141	75806365	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75806100_75806400
ES_00004087	chr10	+	4473	23	ISM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	11797	0	-394	0	3prime_fragment	FALSE	canonical	3	162	junction_1	37.3435303124698	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	NA	False	NA	12	True	AATAAA	-18	NA	76316557	76351691	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
ES_00004089	chr10	+	6334	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	-7	-1660	-7	1	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGTCTTCCTTTTGCAT	NA	False	NA	11	True	AATAAA	-18	NA	76367433	76392973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
ES_00004093	chr10	+	2436	6	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	7	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	44.1832547465666	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGGGCTTTTCTGTTGT	NA	False	NA	9	True	ATTAAA	-11	NA	76869052	76886258	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_76869285_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ES_00004094	chr10	+	2361	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	-14	0	-14	0	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869031	76886265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ES_00004104	chr10	+	1017	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	-12	0	-12	0	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTTTGTCAAACATA	NA	False	NA	5	True	ATTAAA	-20	NA	77442030	77452544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
ES_00004106	chr10	+	1874	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442404	77453256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
ES_00004116	chr10	+	2287	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5344	False	NA	30	True	AATAAA	-39	NA	78410278	78420336	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ES_00004117	chr10	+	2751	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	-518	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCAAGGACTCAGTCACA	5375	False	NA	7	True	AATAAA	-16	NA	78410309	78420313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ES_00004118	chr10	+	2353	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	-24	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5375	False	NA	30	True	AATAAA	-39	NA	78410309	78420336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ES_00004119	chr10	+	2456	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACAGAATCTGTGTATA	5431	False	NA	20	True	AATAAA	-29	NA	78410365	78420326	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ES_00004123	chr10	+	944	4	FSM	ENSMUSG00000020310.10	ENSMUST00000217748.2	944	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.29983164553722	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCCCAGAGCTAAATAAAA	3183	False	NA	NA	False	NA	NA	NA	79500420	79504339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79504070
ES_00004125	chr10	+	957	2	FSM	ENSMUSG00000020308.8	ENSMUST00000220175.2	278	2	0	-679	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8509	False	NA	11	True	AATAAA	-13	NA	79505746	79511961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79505976_79511233
ES_00004127	chr10	+	828	2	NNC	ENSMUSG00000020308.8	novel	368	2	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8494	False	NA	11	True	AATAAA	-13	NA	79505731	79511961	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_79505832_79511233
ES_00004131	chr10	+	995	5	FSM	ENSMUSG00000020307.16	ENSMUST00000218964.2	979	5	-12	-4	0	0	multi-exon	FALSE	canonical	3	168	junction_4	778.055749930556	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518295	79524232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523686
ES_00004140	chr10	+	3193	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	-24	0	0	0	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACCACGTAATAGCATAA	1561	False	NA	NA	False	ATTAAA	-16	NA	79690438	79700605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ES_00004141	chr10	+	2823	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	2	0	intron_retention	FALSE	canonical	3	18	junction_9	472.699252520388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1563	False	NA	31	True	ATTAAA	-15	NA	79690440	79700193	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ES_00004144	chr10	+	2108	4	FSM	ENSMUSG00000006498.17	ENSMUST00000169580.2	2108	4	0	0	0	0	multi-exon	FALSE	canonical	3	1564	junction_2	85.0450860818347	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	3254	False	NA	23	True	AATAAA	-13	NA	79697850	79700266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79698376_79698486_79698704_79698811_79698890_79698978
ES_00004148	chr10	+	5244	9	FSM	ENSMUSG00000019564.13	ENSMUST00000105376.2	4892	9	-37	-315	-37	0	multi-exon	FALSE	canonical	3	17	junction_1	10.5089247784919	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGCTTTTTTGATTTTG	2108	False	NA	9	True	ATTAAA	-26	NA	79763137	79790852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79763235_79766468_79767123_79767599_79767913_79782318_79782392_79784693_79784878_79785198_79785447_79786461_79786759_79787081_79787181_79787573
ES_00004154	chr10	+	2462	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	-2	0	-2	0	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGCACACGCCTT	1767	False	NA	NA	False	NA	NA	NA	79824415	79831896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
ES_00004156	chr10	+	6606	46	FSM	ENSMUSG00000035722.16	ENSMUST00000171637.8	6638	46	32	0	-7	0	multi-exon	FALSE	canonical	3	12	junction_11	11.8630872670723	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAACTAGAATGAGAAT	7124	False	NA	-9	True	NA	NA	NA	79833441	79851387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79833515_79833602_79833697_79833847_79833990_79834077_79834191_79834284_79834359_79834590_79834672_79835214_79835426_79835514_79835655_79836545_79836663_79836756_79836925_79837323_79837554_79837868_79838046_79838340_79838564_79838664_79838887_79838965_79839168_79839630_79839742_79840214_79840387_79840552_79840685_79840787_79840928_79841476_79841615_79841821_79842010_79842085_79842144_79842266_79842545_79842719_79842757_79842969_79843063_79843133_79843286_79843487_79843613_79843696_79843796_79843978_79844267_79844372_79844406_79844496_79844675_79844761_79844932_79845691_79845870_79845984_79846101_79846869_79847015_79847108_79847233_79847546_79847677_79847748_79847870_79847957_79848021_79849145_79849253_79849452_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
ES_00004160	chr10	+	879	7	FSM	ENSMUSG00000075706.12	ENSMUST00000144698.8	879	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3813.11533467787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	1947	False	NA	4	True	AATAAA	-14	NA	79882999	79892273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79883210_79884579_79884663_79890347_79890443_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ES_00004161	chr10	+	959	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ES_00004164	chr10	+	1619	10	FSM	ENSMUSG00000003068.18	ENSMUST00000105371.9	1619	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.9143310244614	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGCTATGAGGGTGTT	3191	False	NA	20	True	AATAAA	-15	NA	79952180	79966304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79952551_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
ES_00004166	chr10	+	781	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1205	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTGTTCTGTTTCTAA	4500	False	NA	14	True	ATTAAA	-13	NA	79978203	79981646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79978441_79979665_79979820_79981256
ES_00004167	chr10	+	901	5	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	0	17883	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1064.2044857545	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGTTAAGTTAAGCAGGT	4500	False	NA	NA	False	NA	NA	NA	79978203	79999535	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256_79981644_79999501
ES_00004170	chr10	+	3616	8	FSM	ENSMUSG00000035621.14	ENSMUST00000099492.10	3597	8	-19	0	-19	0	multi-exon	FALSE	canonical	3	9	junction_7	4.49943307086389	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTGCCCCTGGCTGTT	NA	False	NA	24	True	AATAAA	-16	NA	79984086	79994201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79984184_79985515_79986148_79987211_79987300_79987494_79987558_79989649_79989968_79990164_79990307_79990967_79991241_79992198
ES_00004175	chr10	+	834	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
ES_00004186	chr10	+	3397	13	FSM	ENSMUSG00000020156.17	ENSMUST00000125784.8	3392	13	-5	0	-5	0	multi-exon	FALSE	canonical	3	168	junction_1	107.02790394202	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGTCATAGTCATTGC	8434	False	NA	16	True	TATAAA	-14	NA	80062483	80079734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80062539_80064155_80064273_80064828_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ES_00004188	chr10	+	1001	9	FSM	ENSMUSG00000020153.15	ENSMUST00000105364.8	983	9	-21	3	-21	-2	multi-exon	FALSE	canonical	3	9	junction_1	752.129476885463	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTGTGTGTTCTGTGTG	9340	False	NA	21	True	AATAAA	-12	NA	80084933	80092624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80085039_80085145_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ES_00004192	chr10	+	2103	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	-22	0	-22	0	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100795	80124242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ES_00004194	chr10	+	1994	12	FSM	ENSMUSG00000069565.13	ENSMUST00000092305.6	1994	12	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_4	263.9061002555	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100907	80124242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113405_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ES_00004200	chr10	+	2142	6	FSM	ENSMUSG00000035504.17	ENSMUST00000105358.8	2208	6	63	3	63	-2	multi-exon	FALSE	canonical	3	14	junction_4	273.806939283868	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGAGTGTGTCCGCTAAG	7090	False	NA	15	True	AATAAA	-16	NA	80165849	80172272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170546_80170628_80170943
ES_00004201	chr10	+	2909	4	FSM	ENSMUSG00000035504.17	ENSMUST00000153167.2	848	4	-53	-2008	0	0	multi-exon	FALSE	canonical	3	516	junction_3	38.0029238641216	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGTGTGTCCGCTAAGCT	7219	False	NA	17	True	AATAAA	-18	NA	80165978	80172274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799
ES_00004203	chr10	+	1434	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	-23	0	-23	0	multi-exon	TRUE	canonical	3	56	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTTTGCACTCAGGT	NA	False	NA	3	True	AATAAA	-15	NA	80438690	80443488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80438784_80442147
ES_00004204	chr10	+	1848	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	-8	-36	0	36	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCGGAGCCTAGAGGTCA	NA	False	NA	49	True	NA	NA	NA	80438705	80451653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ES_00004205	chr10	+	1278	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	-7	0	-7	0	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCCTGCTCCCACCTGTT	NA	False	NA	NA	False	NA	NA	NA	80438783	80450797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ES_00004208	chr10	+	2457	12	NIC	ENSMUSG00000003345.17	novel	2348	11	NA	NA	-147	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	200.004462760127	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAATGTTGGCCTGGG	NA	False	NA	9	True	GGGGCT	-36	NA	80458524	80476575	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475370_80475498_80475601_80475709_80475855
ES_00004209	chr10	+	2410	12	NNC	ENSMUSG00000003345.17	novel	2348	11	NA	NA	-147	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	194.276874929137	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAATGTTGGCCTGGG	NA	False	NA	9	True	GGGGCT	-36	NA	80458524	80476575	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474717_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
ES_00004210	chr10	+	2356	11	FSM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	0	-8	0	0	multi-exon	FALSE	canonical	3	651	junction_8	40.2685981876698	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCCTGGGCTTTACCA	NA	False	NA	17	True	GGGGCT	-44	NA	80458671	80476583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
ES_00004212	chr10	+	1338	3	FSM	ENSMUSG00000003345.17	ENSMUST00000220025.2	624	3	-235	-479	0	0	multi-exon	FALSE	canonical	3	668	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCCTGGGCTTTACCA	NA	False	NA	17	True	GGGGCT	-44	NA	80474994	80476583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80475498_80475601_80475709_80475855
ES_00004216	chr10	+	6808	28	FSM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_7	16.1546877685662	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTTCTCAGTGCCAGTT	1655	False	NA	16	True	AATAAA	-20	NA	80591039	80631295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
ES_00004217	chr10	+	7476	29	NIC	ENSMUSG00000061589.15	novel	6808	28	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_27	19.5948764648688	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTTCTCAGTGCCAGTT	1618	False	NA	16	True	AATAAA	-20	NA	80591002	80631295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80627976_80628608_80629340
ES_00004218	chr10	+	7260	19	NIC	ENSMUSG00000061589.15	novel	6808	28	NA	NA	3174	0	intron_retention	FALSE	canonical	3	39	junction_18	18.8224321121709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTTCTCAGTGCCAGTT	1150	False	NA	16	True	AATAAA	-20	NA	80616563	80631295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80627976
ES_00004225	chr10	+	717	5	NIC	ENSMUSG00000035242.16	novel	708	6	NA	NA	-7	0	intron_retention	FALSE	canonical	3	233	junction_1	2913.0790733346	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGTCTACACTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	80662508	80664791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_80662740_80664076_80664217_80664294_80664468_80664544_80664631_80664704
ES_00004227	chr10	+	2526	2	FSM	ENSMUSG00000035242.16	ENSMUST00000179894.2	2526	2	0	0	0	0	multi-exon	FALSE	canonical	3	7170	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGCTGTGTCTTGTGTCC	NA	False	NA	13	True	AATAAA	-13	NA	80662515	80665118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80664468_80664544
ES_00004229	chr10	+	1287	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	245	False	NA	5	True	AATAAA	-14	NA	80765903	80768038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ES_00004230	chr10	+	732	3	FSM	ENSMUSG00000015312.10	ENSMUST00000220246.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	12.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCCAAACATCTAAAGCAAC	336	False	NA	-57	True	NA	NA	NA	80765994	80767486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80766384_80766862_80767086_80767366
ES_00004233	chr10	+	2396	11	FSM	ENSMUSG00000035027.19	ENSMUST00000143517.8	2405	11	9	0	9	0	multi-exon	FALSE	canonical	3	212	junction_7	154.06131896099	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGACTTTTTGTGTGTG	1109	False	NA	NA	False	NA	NA	NA	80941757	80960531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956876_80956945_80957736_80957799_80958400_80958447_80959453
ES_00004234	chr10	+	761	2	FSM	ENSMUSG00000035027.19	ENSMUST00000123241.2	761	2	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTGGAAGAAGGGCAGG	NA	False	NA	57	True	NA	NA	NA	80957993	80959761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80958447_80959453
ES_00004242	chr10	+	1472	8	NIC	ENSMUSG00000034974.14	novel	1730	9	NA	NA	-4	-9	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	124.878062974427	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAATAAAGCTGCTTTCC	8563	False	NA	-14	True	NA	NA	NA	81018846	81028808	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_81018931_81019809_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81027592_81027746_81028130_81028177_81028259
ES_00004252	chr10	+	4211	17	FSM	ENSMUSG00000034902.18	ENSMUST00000163075.8	4208	17	-3	0	-3	0	multi-exon	FALSE	canonical	3	97	junction_16	27.8766815636295	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTCCTCTCCGGTGACTT	4972	False	NA	NA	False	AATAAA	-15	NA	81128793	81155806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153599
ES_00004259	chr10	+	1765	6	FSM	ENSMUSG00000113262.2	ENSMUST00000144647.8	1758	6	-7	0	-7	0	multi-exon	FALSE	canonical	3	12	junction_5	364.148541120241	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGACCTTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	81220292	81227394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81226192_81226419_81226622
ES_00004261	chr10	+	415	2	FSM	ENSMUSG00000085327.2	ENSMUST00000156260.2	401	2	-11	-3	-11	3	multi-exon	FALSE	canonical	3	16	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACACAGCAGACATGCGG	NA	False	NA	NA	False	AATAAA	-17	NA	81245397	81247416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81245600_81247203
ES_00004265	chr10	+	696	7	FSM	ENSMUSG00000034771.16	ENSMUST00000145878.2	757	7	61	0	61	0	multi-exon	FALSE	canonical	0	0	junction_5	1.10554159678513	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGAGTAGCACATGGGCTG	2636	False	NA	NA	False	NA	NA	NA	81416728	81422761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81416749_81417478_81417590_81418246_81418292_81418570_81418721_81420436_81420576_81422046_81422208_81422691
ES_00004271	chr10	+	829	5	FSM	ENSMUSG00000054708.18	ENSMUST00000132458.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	34.9070193514141	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGCAGGAATACCCAGT	NA	False	NA	NA	False	NA	NA	NA	81479636	81483308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81479728_81480809_81480978_81482138_81482268_81482626_81482693_81482933
ES_00004275	chr10	+	1713	2	Intergenic	novelGene_363	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATACTGCCATCTATTT	6009	False	NA	NA	False	AATAAA	-20	NA	81627093	81629342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81627155_81627690
ES_00004281	chr10	+	3141	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	0	-415	0	415	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACATGAAATTAAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	81919186	81947465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
ES_00004282	chr10	+	3330	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190149	82215470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
ES_00004287	chr10	+	5300	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	133	4	-71	-4	intron_retention	FALSE	canonical	3	69	junction_7	9.81666256450355	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTACAGGTGGTATTATT	NA	False	NA	NA	False	AATAAA	-19	NA	82534973	82578258	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
ES_00004291	chr10	+	2297	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	0	0	0	0	multi-exon	TRUE	canonical	1	267	junction_3	142.059218034492	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTGTAGCATTGTCTC	NA	False	NA	NA	False	AATACA	-16	NA	82695040	82732439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ES_00004292	chr10	+	412	2	FSM	ENSMUSG00000020250.12	ENSMUST00000218082.2	483	2	0	71	0	-71	multi-exon	FALSE	canonical	3	560	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGGCATGGGGTACCAA	NA	False	NA	NA	False	NA	NA	NA	82695077	82696712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_82695135_82696357
ES_00004293	chr10	+	3555	14	FSM	ENSMUSG00000020250.12	ENSMUST00000219442.3	3531	14	-24	0	-24	0	multi-exon	FALSE	canonical	1	267	junction_2	143.143532881919	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCGTGCCTTCTGACTGA	NA	False	NA	13	True	AATAAA	-14	NA	82696110	82733544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ES_00004298	chr10	+	5864	33	FSM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	-6	0	-6	0	multi-exon	FALSE	canonical	3	259	junction_12	27.5850956133924	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83379798	83432337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
ES_00004299	chr10	+	5642	34	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	154	junction_33	39.1231720279898	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83379817	83432337	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034_83431733_83431935
ES_00004301	chr10	+	622	1	FSM	ENSMUSG00000111875.2	ENSMUST00000214125.2	459	1	-52	-111	-52	111	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAGAGAAAGCAACTTC	NA	False	NA	NA	False	AATAAA	-21	NA	84144697	84145319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_84144700_84145300
ES_00004302	chr10	+	4975	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTCTGAGAGGTGATGT	NA	False	NA	22	True	NA	NA	NA	84458155	84563042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
ES_00004304	chr10	+	2911	9	FSM	ENSMUSG00000035620.16	ENSMUST00000095385.5	2909	9	-2	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	11.5325625946708	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753517	84852311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
ES_00004311	chr10	+	1655	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	78.2747564672034	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ES_00004314	chr10	+	1665	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521474	86525818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_86521602_86521743_86521861_86524397
ES_00004315	chr10	+	1629	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	-7	0	-7	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521381	86525818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_86521473_86521743_86521861_86524397
ES_00004319	chr10	+	1358	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	-81	0	4	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982857	88014250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ES_00004321	chr10	+	854	6	FSM	ENSMUSG00000020056.17	ENSMUST00000171151.9	837	6	-19	2	0	-2	multi-exon	FALSE	canonical	1	1	junction_5	153.628903530553	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGTTTTCTGATTCTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	88037013	88061222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88060893
ES_00004322	chr10	+	992	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	-154	0	2	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAATGTGTCTTAAGTTTT	NA	False	NA	NA	False	AATATA	-19	NA	88037013	88082022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
ES_00004323	chr10	+	756	8	NNC	ENSMUSG00000020056.17	novel	1052	7	NA	NA	0	6970	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	133.749995231737	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTAGTTTGTTTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	88037124	88088990	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617_88081868_88088963
ES_00004325	chr10	+	5392	21	FSM	ENSMUSG00000035311.17	ENSMUST00000020251.10	5390	21	-2	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	23.2735901828661	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTATTGTTAGTATTTTT	NA	False	NA	22	True	CATAAA	-24	NA	88215085	88283191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_88215398_88236513_88236600_88247777_88247898_88248466_88248509_88250254_88250461_88254986_88255052_88255287_88255423_88264354_88264517_88265322_88265503_88265701_88265873_88267194_88267319_88268302_88268507_88268910_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88279170_88279262_88281624
ES_00004330	chr10	+	2094	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	-14	0	-14	0	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	88566915	88579956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ES_00004331	chr10	+	6448	21	FSM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_11	11.4144645078076	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTTTGTCCGATTGGTT	NA	False	NA	21	True	TATAAA	-32	NA	89580852	89655733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ES_00004332	chr10	+	2091	13	NNC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	6	10163	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_12	53.9866238577257	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTATACGGTGTTAGCA	NA	False	NA	NA	False	AATAAA	-20	NA	89580858	89628285	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_89581151_89591282_89591417_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89627983
ES_00004333	chr10	+	6426	21	NIC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_17	30.3006188055624	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACTTTGTCCGATTGGT	NA	False	NA	20	True	TATAAA	-31	NA	89580858	89655732	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645626_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ES_00004334	chr10	+	6582	22	NIC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	36.4327728669602	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTTTGTCCGATTGGTT	NA	False	NA	21	True	TATAAA	-32	NA	89580852	89655733	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_89581151_89591282_89591417_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ES_00004340	chr10	+	3710	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	-30	-448	-30	448	multi-exon	FALSE	canonical	3	50	junction_2	27	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCACCTAATTATTTGT	725	False	NA	NA	False	AATAAA	-15	NA	90918888	90934967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_90919159_90929000_90929119_90931645
ES_00004343	chr10	+	3630	17	FSM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	-15	0	0	0	multi-exon	FALSE	canonical	3	213	junction_16	22.6329405955126	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTGTGGAGTCAC	NA	False	NA	15	True	TATAAA	-2	NA	92996736	93077190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827_93074906_93075449
ES_00004351	chr10	+	256	2	Antisense	novelGene_ENSMUSG00000036099.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTAAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	93772343	93791191	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_93772428_93791019
ES_00004352	chr10	+	7982	21	FSM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	62	0	62	0	multi-exon	FALSE	canonical	3	10	junction_10	4.04474968323134	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTGTGAAGTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	93871924	93981201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_93872173_93879163_93881496_93910044_93910193_93925438_93925507_93925593_93925625_93936263_93936416_93939103_93939261_93941846_93941935_93956314_93956366_93959100_93959160_93959405_93959478_93960751_93960821_93961410_93961495_93963230_93963311_93969141_93969245_93969862_93970007_93970878_93970982_93973297_93973426_93974145_93974275_93975600_93975750_93977614
ES_00004356	chr10	+	5520	4	FSM	ENSMUSG00000020023.19	ENSMUST00000065060.12	5530	4	8	2	8	-2	multi-exon	FALSE	canonical	3	5	junction_3	2.05480466765633	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTCAGAGCCCATC	NA	False	NA	8	True	AATAAA	-23	NA	94350726	94426816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_94350967_94414284_94415202_94418135_94418272_94422589
ES_00004358	chr10	+	3888	7	FSM	ENSMUSG00000020024.8	ENSMUST00000220052.2	3910	7	-16	38	0	-38	multi-exon	TRUE	canonical	3	151	junction_6	27.6872413456692	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGTAAAATTAAGCAAATA	9504	False	NA	NA	False	NA	NA	NA	94524515	94578517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918
ES_00004360	chr10	+	1842	4	FSM	ENSMUSG00000020024.8	ENSMUST00000220352.2	1842	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	88.9044430835715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAGAAAAGAAAAG	9568	False	NA	NA	False	CATAAA	-34	NA	94524579	94557635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94556541
ES_00004364	chr10	+	2134	4	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-908	488	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	54.9201440477191	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTGTCTCCTTGGTAT	NA	False	NA	NA	False	NA	NA	NA	95728396	95733607	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_95729296_95729415_95729528_95730062_95730152_95732573
ES_00004367	chr10	+	1530	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	47	625	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAATATCATTCTCCAC	NA	False	NA	32	True	AATAAA	-25	NA	95729351	95733744	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_95729528_95729968_95730152_95732573
ES_00004370	chr10	+	7348	21	NIC	ENSMUSG00000019943.11	novel	1404	6	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	221	junction_9	23.8756675299352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGACTGAACTTTTTGAC	NA	False	NA	12	True	AATAAA	-24	NA	98750217	98862005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
ES_00004371	chr10	+	7130	21	FSM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	42.6978922196401	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGACTGAACTTTTTGAC	NA	False	NA	12	True	AATAAA	-24	NA	98751013	98862005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
ES_00004374	chr10	+	2865	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	83	-86	16	0	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGTCTTCTCTTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	98942980	99033936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
ES_00004378	chr10	+	1260	9	FSM	ENSMUSG00000019966.19	ENSMUST00000020129.8	1260	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	5.02338282435253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTTTTTTTTTCACAAA	NA	False	NA	NA	False	NA	NA	NA	99851777	99932260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_99851898_99887707_99887822_99899945_99900009_99912596_99912768_99915835_99915993_99923208_99923319_99924014_99924083_99925057_99925134_99931879
ES_00004382	chr10	+	957	1	FSM	ENSMUSG00000095673.2	ENSMUST00000179735.2	914	1	178	-221	178	221	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCATTTTCACCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	100202538	100203495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100202500_100203500
ES_00004385	chr10	+	7985	52	FSM	ENSMUSG00000019971.11	ENSMUST00000219765.2	7985	52	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_16	7.32929531270596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCATAATTGTTCAGGT	NA	False	NA	NA	False	ATTAAA	-22	NA	100324150	100409517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100324271_100324423_100324502_100325181_100325252_100326008_100326056_100328509_100328654_100330762_100330817_100331684_100331838_100332550_100332734_100333801_100333892_100334923_100335047_100336008_100336133_100336964_100337138_100344525_100344689_100346348_100346450_100346523_100346612_100348148_100348262_100349781_100349867_100350319_100350463_100350995_100351161_100352015_100352166_100353638_100353755_100354315_100354419_100354506_100354738_100359091_100359266_100364410_100364523_100365879_100366086_100366962_100367115_100372667_100372780_100373297_100373754_100374787_100374953_100375845_100375954_100376197_100376333_100377411_100377679_100378278_100378387_100379103_100379304_100380778_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
ES_00004386	chr10	+	2038	2	FSM	ENSMUSG00000019971.11	ENSMUST00000219889.2	2170	2	129	3	129	-3	multi-exon	FALSE	canonical	3	41	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTACTGGGTCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	100407924	100410699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100408005_100408741
ES_00004387	chr10	+	1805	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	0	23527	0	-1310	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTGCCACTGTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	103203668	103231709	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
ES_00004389	chr10	+	3774	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-231	0	-206	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203437	103255236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ES_00004391	chr10	+	3261	12	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	410	-4	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	33.5120553120764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACGGAGTTCGTGTCCCT	NA	False	NA	NA	False	AATAAA	-11	NA	103204113	103255232	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ES_00004393	chr10	+	1806	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	7	0	7	0	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105676934	105683694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ES_00004394	chr10	+	4307	3	FSM	ENSMUSG00000019897.9	ENSMUST00000133538.2	4314	3	7	0	7	0	multi-exon	FALSE	canonical	3	411	junction_2	58.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105676934	105683694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_105677517_105678402_105681311_105682877
ES_00004398	chr10	+	5066	11	FSM	ENSMUSG00000019907.11	ENSMUST00000218161.2	5066	11	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_9	23.8042013098528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAGCACTTTGTGTAT	NA	False	NA	NA	False	AGTAAA	-19	NA	108088970	108115845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_108089357_108095616_108095708_108096696_108096898_108097105_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
ES_00004411	chr10	+	1516	14	FSM	ENSMUSG00000058799.17	ENSMUST00000219961.2	1512	14	-4	0	0	0	multi-exon	FALSE	canonical	3	75	junction_13	616.19895158057	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAGAAGAAGGAGATGAG	NA	False	NA	NA	False	AATATA	-6	NA	111309083	111331189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911
ES_00004412	chr10	+	1369	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	-19	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTCATTTACTTACAGC	NA	False	NA	-11	True	NA	NA	NA	111309083	111331980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ES_00004413	chr10	+	1740	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	-254	0	-254	0	multi-exon	TRUE	canonical	3	684	junction_15	463.449884621364	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111308829	111332745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ES_00004414	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309141	111330870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
ES_00004416	chr10	+	583	1	FSM	ENSMUSG00000111997.2	ENSMUST00000220267.2	583	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGTTGGTTTTAGGACA	NA	False	NA	NA	False	AAAAAG	-40	NA	111336644	111337227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111336600_111337200
ES_00004424	chr10	+	675	2	FSM	ENSMUSG00000052291.9	ENSMUST00000219273.2	676	2	0	1	0	-1	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCGCACCGAAAACTT	NA	False	NA	NA	False	AATAAA	-33	NA	116417480	116419418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_116417628_116418890
ES_00004426	chr10	+	1178	7	NIC	ENSMUSG00000020212.15	novel	2922	13	NA	NA	0	-57	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	38.8304719975892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGAGCCTGCCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	117977715	117994316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_117977868_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206
ES_00004427	chr10	+	3095	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	-21	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977715	118004902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ES_00004429	chr10	+	2983	13	NIC	ENSMUSG00000020212.15	novel	3074	14	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	21.2053452380919	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977692	118004902	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ES_00004436	chr10	+	540	3	FSM	ENSMUSG00000020225.11	ENSMUST00000134797.8	486	3	0	-54	0	54	multi-exon	FALSE	canonical	3	595	junction_1	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTTTCGTTGTCCACC	NA	False	NA	NA	False	NA	NA	NA	120044684	120053676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_120044848_120051445_120051555_120053408
ES_00004439	chr10	+	1741	7	Intergenic	novelGene_408	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	72	junction_5	13.7285185734741	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATTTTATTTTATTT	NA	False	NA	NA	False	AAAAAG	-14	NA	120359229	120371330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224
ES_00004440	chr10	+	1961	9	Intergenic	novelGene_410	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_8	31.4880929876676	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCCAGTCTTCAAATGAT	NA	False	NA	15	True	AATAAA	-15	NA	120359232	120374521	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370312_120372451_120372613_120373440
ES_00004441	chr10	+	1609	11	Intergenic	novelGene_411	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_8	31.0845620847391	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGTCTTCAAATGATTG	NA	False	NA	17	True	AATAAA	-17	NA	120359232	120374523	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370312_120372451_120372613_120373440_120373621_120373690_120373794_120374077
ES_00004445	chr10	+	3860	14	FSM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	-5	0	-5	0	multi-exon	FALSE	canonical	3	144	junction_4	13.2731878157773	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCAATGTGTCCTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	121200989	121233150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_121201264_121207048_121207109_121210262_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
ES_00004447	chr10	+	2709	3	NNC	ENSMUSG00000053684.9	novel	3123	3	NA	NA	1	-3292	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	69	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTATATTTTATTTCCTTT	NA	False	NA	NA	False	AATAAA	-27	NA	121575843	121584996	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_121576116_121581235_121581522_121582845
ES_00004449	chr10	+	2932	4	NNC	ENSMUSG00000053684.9	novel	3123	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	64.8194072447099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTATATATGGTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	121575843	121588770	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_121576116_121581402_121581522_121586207_121587359_121587380
ES_00004450	chr10	+	3014	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	-61	15	-60	-2	multi-exon	FALSE	canonical	3	27	junction_1	61	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATGTATATATGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	121575781	121588768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_121576116_121581402_121581522_121586207
ES_00004451	chr10	+	6360	10	FSM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	9	0	9	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6428327977153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTGGGTTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	122514695	122781700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_122515336_122618087_122618251_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
ES_00004455	chr10	+	4817	8	FSM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	56.6705480863575	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126814585	126835838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229
ES_00004456	chr10	+	4903	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	-180	0	at_least_one_novel_splicesite	TRUE	canonical	3	227	junction_8	69.7656792413003	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126814405	126835838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835300_126835393
ES_00004462	chr10	+	586	4	FSM	ENSMUSG00000006728.13	ENSMUST00000135179.8	574	4	-12	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	2458.18813130502	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTGTTAATGGTACA	NA	False	NA	-83	True	NA	NA	NA	126899472	126901149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126899629_126900453_126900590_126900703_126900872_126901023
ES_00004463	chr10	+	2048	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	-10	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899472	126903166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
ES_00004466	chr10	+	2395	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	354	False	NA	8	True	GGGGCT	-23	NA	127001093	127008199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ES_00004467	chr10	+	2220	10	FSM	ENSMUSG00000006731.11	ENSMUST00000217678.2	2212	10	-2	-6	0	6	multi-exon	FALSE	canonical	3	10	junction_5	17.4384278371675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCTCTGTGGTACTT	354	False	NA	14	True	GGGGCT	-29	NA	127001093	127008205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ES_00004468	chr10	+	1722	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	-226	1	-73	0	multi-exon	FALSE	canonical	3	48	junction_1	9.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCAATTTTTTTGTTTT	281	False	NA	NA	False	ATTAAA	-23	NA	127001020	127004391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
ES_00004472	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126642	127132157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
ES_00004480	chr10	+	4154	25	NIC	ENSMUSG00000025404.16	novel	4281	27	NA	NA	-43	-3	combination_of_known_junctions	FALSE	canonical	3	158	junction_11	25.3408705892718	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATATAAAAAAAGCAAAAAA	NA	False	NA	-17	True	NA	NA	NA	127216487	127335215	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_127216806_127226179_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127307636_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
ES_00004482	chr10	+	4029	26	FSM	ENSMUSG00000025404.16	ENSMUST00000077046.12	4029	26	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	72.9174876144262	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGCTGTTTGTTTCACTG	NA	False	NA	20	True	TATAAA	-36	NA	127226179	127335252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127300999_127301054_127307636_127307870_127312388_127312568_127317561_127317664_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
ES_00004490	chr10	+	5905	9	NNC	ENSMUSG00000040195.12	novel	6002	9	NA	NA	-13	34	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_3	43.8461443572864	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTCATGGTGTGGAC	NA	False	NA	50	True	ATTAAA	-14	NA	127512919	127536952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_127513097_127524101_127524218_127525093_127525168_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
ES_00004501	chr10	+	1131	5	FSM	ENSMUSG00000025393.13	ENSMUST00000126040.8	1131	5	0	0	0	0	multi-exon	FALSE	canonical	3	10302	junction_3	531.371103843632	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCGAGAGCTCAGGTT	NA	False	NA	-91	True	NA	NA	NA	127921614	127926029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ES_00004503	chr10	+	1004	4	FSM	ENSMUSG00000040054.18	ENSMUST00000219082.2	1782	4	-23	801	8	-801	multi-exon	FALSE	canonical	3	5	junction_1	161.965016798896	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAACTGGGTCTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	127927458	127947217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127927646_127932307_127932393_127944762_127944901_127946623
ES_00004508	chr10	+	8404	29	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	493	0	at_least_one_novel_splicesite	FALSE	canonical	3	115	junction_4	106.070514666578	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	0	True	AATAAA	-20	NA	127932741	127965172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961889_127962111_127962194_127962339_127962456
ES_00004509	chr10	+	8409	29	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	488	0	at_least_one_novel_splicesite	FALSE	canonical	3	275	junction_3	79.9461553490976	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	0	True	AATAAA	-20	NA	127932736	127965172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
ES_00004511	chr10	+	4365	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	-24	0	0	0	multi-exon	FALSE	canonical	3	180	junction_28	54.1443059549842	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAAGAGTCATATAGC	6591	False	NA	-69	True	NA	NA	NA	128067933	128088721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
ES_00004512	chr10	+	4588	28	FSM	ENSMUSG00000039994.16	ENSMUST00000145710.8	4573	28	-15	0	0	0	multi-exon	FALSE	canonical	3	249	junction_22	47.8995863277583	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6591	False	NA	11	True	AATAAA	-41	NA	128067933	128088801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128068045_128075702_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ES_00004513	chr10	+	4457	29	FSM	ENSMUSG00000039994.16	ENSMUST00000055539.11	4457	29	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_23	47.0561431934758	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	6591	False	NA	20	True	AATAAA	-20	NA	128067933	128088810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ES_00004515	chr10	+	4385	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105242.8	4385	29	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_23	64.9742001387741	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	6660	False	NA	20	True	AATAAA	-20	NA	128068002	128088810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ES_00004522	chr10	+	4411	24	FSM	ENSMUSG00000040033.17	ENSMUST00000085708.3	4394	24	-17	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	16.4593788801125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATACTGTGAGAGTGTG	2361	False	NA	NA	False	AATAAA	-20	NA	128106427	128128718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
ES_00004523	chr10	+	4397	24	FSM	ENSMUSG00000040033.17	ENSMUST00000105238.10	4397	24	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	16.4593788801125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATACTGTGAGAGTGTG	2378	False	NA	NA	False	AATAAA	-20	NA	128106444	128128718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119098_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
ES_00004524	chr10	+	4432	26	FSM	ENSMUSG00000005682.10	ENSMUST00000218315.2	4379	26	-59	6	-20	0	multi-exon	FALSE	canonical	2	164	junction_12	40.3480061465248	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	9	True	AATAAA	-18	NA	128139183	128157216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ES_00004525	chr10	+	4465	26	FSM	ENSMUSG00000005682.10	ENSMUST00000005825.8	4445	26	-20	0	-20	0	multi-exon	FALSE	canonical	2	78	junction_17	49.8603810655314	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	15	True	AATAAA	-24	NA	128139183	128157222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ES_00004526	chr10	+	4414	26	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_13	57.2123902664449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTCATTAGAAAACCGCT	NA	False	NA	0	True	AATAAA	-9	NA	128139204	128157207	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150198_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ES_00004528	chr10	+	4420	26	NNC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_13	63.8948386021907	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGAAAACCGCTAGTGTG	NA	False	NA	6	True	AATAAA	-15	NA	128139231	128157213	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150198_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ES_00004529	chr10	+	4449	26	NNC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_13	73.7804960677278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	9	True	AATAAA	-18	NA	128139208	128157216	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150048_128150198_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ES_00004530	chr10	+	4279	26	NIC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	24	junction_2	56.8384939983459	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAACCGCTAGTGTGGG	NA	False	NA	8	True	AATAAA	-17	NA	128139231	128157215	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_128139341_128139963_128140259_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ES_00004531	chr10	+	5071	24	FSM	ENSMUSG00000005682.10	ENSMUST00000218496.2	5051	24	-23	3	5	2	multi-exon	FALSE	canonical	2	24	junction_2	64.924443508122	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTGTGGGATTCTTTGG	NA	False	NA	17	True	AATAAA	-26	NA	128139208	128157224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128139341_128139963_128140259_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154908_128156116_128156315_128156602
ES_00004532	chr10	+	935	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	-172	0	-163	0	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158164	128163056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ES_00004538	chr10	+	5394	28	FSM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-130	-1232	-57	106	multi-exon	FALSE	canonical	3	31	junction_27	21.277769719239	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCGTTCGGTACTTGGG	2564	False	NA	NA	False	AGTAAA	-21	NA	128295059	128326457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128324229_128324764
ES_00004539	chr10	+	4576	29	FSM	ENSMUSG00000025369.16	ENSMUST00000099131.11	4562	29	-14	0	0	0	multi-exon	FALSE	canonical	1	3	junction_18	29.4428493449771	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTTCTTTTTCCTTT	2667	False	NA	-4	True	NA	NA	NA	128295162	128325991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317550_128317644_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
ES_00004540	chr10	+	4533	28	FSM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_11	16.862633913377	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTGGGTGCCTCTGT	2667	False	NA	46	True	TATAAA	-19	NA	128295162	128326041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
ES_00004544	chr10	+	1192	4	FSM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	-49	0	24	0	multi-exon	FALSE	canonical	3	5	junction_1	140.632697320202	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	128584347	128602433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128584436_128586151_128586207_128601015_128601110_128601478
ES_00004546	chr10	+	6446	7	FSM	ENSMUSG00000025354.6	ENSMUST00000026410.2	4229	7	-121	-2096	1	2096	multi-exon	FALSE	canonical	3	32	junction_1	125.746658890892	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGCTTCAGGAGCCCGT	4017	False	NA	NA	False	TTTAAA	-20	NA	128641423	128657411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128641584_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ES_00004549	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	128657762	128713486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ES_00004550	chr10	+	1084	12	FSM	ENSMUSG00000078427.4	ENSMUST00000220381.2	1084	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	1706.39307380042	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128687606_128687802_128689051_128689121_128708289_128708380_128713201
ES_00004552	chr10	+	1063	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	723	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGAGATGGTCTCA	354	False	NA	28	True	ATTAAA	-20	NA	128745567	128748684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ES_00004558	chr10	-	3984	1	FSM	ENSMUSG00000075327.11	ENSMUST00000215860.2	6794	1	2819	-9	2819	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATCGTTTTCTTGCTTA	NA	False	NA	NA	False	AATAAA	-19	NA	4321056	4317072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_4317100_4321100
ES_00004559	chr10	-	3088	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100077.5	3086	3	0	-2	0	2	multi-exon	FALSE	canonical	3	11	junction_2	37	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATCGTTTTCTTGCTTA	NA	False	NA	NA	False	AATAAA	-19	NA	4337475	4317072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_4319852_4324569_4324755_4337351
ES_00004560	chr10	-	3225	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100078.10	3226	3	3	-2	3	2	multi-exon	FALSE	canonical	3	64	junction_2	10.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATCGTTTTCTTGCTTA	NA	False	NA	NA	False	AATAAA	-19	NA	4338105	4317072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_4319852_4324569_4324755_4337844
ES_00004561	chr10	-	3137	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	7	-5	7	5	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAAACAAA	5669	False	NA	NA	False	TTTAAA	-12	NA	4382381	4351909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
ES_00004562	chr10	-	2168	12	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	107	junction_2	18.0417330717258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5749	False	NA	-5	True	NA	NA	NA	4382301	4353170	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
ES_00004563	chr10	-	2008	13	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	29.0128084741129	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5739	False	NA	-5	True	NA	NA	NA	4382311	4353170	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382063
ES_00004564	chr10	-	1772	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	8	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACACTGAGTTCAAGTCC	5706	False	NA	NA	False	NA	NA	NA	4382344	4376093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_4377692_4379076_4379172_4382265
ES_00004566	chr10	-	5237	19	FSM	ENSMUSG00000096054.4	ENSMUST00000215887.2	5412	19	182	-7	182	-1	multi-exon	TRUE	canonical	2	5	junction_5	3.31336612249965	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCCTTGATTTTGGTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	5318304	5286941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_5289386_5292153_5292295_5293357_5293523_5294794_5294963_5296820_5296986_5297821_5297931_5298540_5298750_5298928_5299088_5299256_5299392_5300864_5301030_5302051_5302211_5303814_5303989_5306676_5306821_5308333_5308487_5308940_5309106_5310673_5310877_5311484_5311582_5317490_5317660_5318191
ES_00004567	chr10	-	2534	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	0	-594	0	594	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTTTTAAAAGAATAACTT	NA	False	NA	NA	False	NA	NA	NA	5755600	5748565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ES_00004568	chr10	-	2598	7	FSM	ENSMUSG00000019774.9	ENSMUST00000019908.9	2588	7	0	-10	0	10	multi-exon	FALSE	canonical	3	26	junction_4	9.49853789918334	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTATGGTGTCCAGGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	5773910	5761876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800_5768985_5770024_5770105_5773525
ES_00004569	chr10	-	3451	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	0	-4	0	4	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATTTTATGAATTTGTG	NA	False	NA	0	True	AATAAA	-15	NA	7162237	7069058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
ES_00004572	chr10	-	2840	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	0	-83	0	83	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCCGTCCAGTGGCGG	NA	False	NA	83	True	NA	NA	NA	7539372	7505053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ES_00004573	chr10	-	2509	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	-18	0	10	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGTCATTGCACATTA	NA	False	NA	10	True	AATAAA	-30	NA	7539067	7505126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ES_00004574	chr10	-	1134	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	0	-2	0	2	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATTCTTGCTTTATTCA	NA	False	NA	3	True	AATAAA	-23	NA	7539025	7513491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ES_00004577	chr10	-	1535	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	-10	0	1	multi-exon	TRUE	canonical	3	252	junction_3	35.482102415679	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTATTTTTAATTTTTG	7489	False	NA	0	True	AATAAA	-18	NA	7656655	7643709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ES_00004578	chr10	-	1405	1	FSM	ENSMUSG00000040006.14	ENSMUST00000188270.2	1405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	7668588	7667183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7667200_7668600
ES_00004580	chr10	-	4423	7	FSM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	-37	-6	-37	6	multi-exon	FALSE	canonical	3	30	junction_6	9.12262145560267	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGGCTTGTCTTTGAA	1251	False	NA	0	True	ATTAAA	-23	NA	7832031	7781410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448_7800637_7831564
ES_00004581	chr10	-	4418	8	NIC	ENSMUSG00000015755.17	novel	4380	7	NA	NA	107	4	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	19.8185647866863	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTGTGGCTTGTCTTTG	1395	False	NA	-2	True	ATTAAA	-21	NA	7831887	7781412	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448_7800637_7808831_7808973_7831564
ES_00004582	chr10	-	4319	8	FSM	ENSMUSG00000047712.9	ENSMUST00000061601.9	4228	8	-52	-39	-52	-14	multi-exon	FALSE	canonical	1	9	junction_7	3.52252228741084	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTCCTTTCTCAAGATG	NA	False	NA	NA	False	NA	NA	NA	8394641	8080533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_8083435_8121666_8121825_8123852_8123951_8173819_8173974_8183171_8183252_8205831_8205988_8266651_8266696_8393913
ES_00004584	chr10	-	8805	28	FSM	ENSMUSG00000019790.18	ENSMUST00000038213.14	8825	28	0	20	0	-20	multi-exon	FALSE	canonical	2	7	junction_7	6.89744590012349	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTAATCTCTTCTGAAAC	6402	False	NA	NA	False	AATAAA	-3	NA	9776427	9631310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764_9653816_9659931_9659980_9660084_9660145_9665106_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049_9693205_9701113_9701193_9711577_9711702_9713820_9713905_9717614_9717679_9718970_9719106_9740756_9740858_9742356_9742439_9774900_9774999_9776274
ES_00004586	chr10	-	5833	26	NNC	ENSMUSG00000019820.12	novel	5751	25	NA	NA	-50	3251	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	28.4757862051252	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATACAGATGTCTTGGTAG	NA	False	NA	NA	False	NA	NA	NA	12424673	12254680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_12254713_12257933_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
ES_00004587	chr10	-	5753	25	FSM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	0	-2	0	0	multi-exon	FALSE	canonical	3	61	junction_24	17.9698339045066	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGATGTTTGGCTGTGT	NA	False	NA	-1	True	AATAAA	-21	NA	12424623	12257931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
ES_00004588	chr10	-	5302	25	FSM	ENSMUSG00000019820.12	ENSMUST00000217994.2	3161	25	241	-2382	241	382	multi-exon	FALSE	canonical	3	18	junction_24	24.236536927173	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACATGAACATATATGTG	NA	False	NA	NA	False	NA	NA	NA	12490334	12257549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12490234
ES_00004590	chr10	-	1055	3	FSM	ENSMUSG00000097378.9	ENSMUST00000181073.9	1050	3	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_1	2	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGAGTGAGTTTATTG	NA	False	NA	NA	False	AATAAA	-18	NA	12798834	12792386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_12792816_12797352_12797462_12798317
ES_00004594	chr10	-	8752	12	NIC	ENSMUSG00000062866.17	novel	8556	13	NA	NA	-208	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_8	9.0160554677945	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTAGTCCATTACTGTTT	NA	False	NA	-13	True	AATAAA	-18	NA	13350364	13083460	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13137509_13137669_13142716_13142798_13167538_13167707_13349799
ES_00004595	chr10	-	2735	12	FSM	ENSMUSG00000062866.17	ENSMUST00000105543.9	2735	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	13.2378121085581	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTATCTCCAAAGTCAG	9902	False	NA	-6	True	AATAAA	-21	NA	13200033	13089138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13137509_13137669_13142716_13142798_13167538_13167707_13199807
ES_00004596	chr10	-	2129	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTTAGCCATTAATTT	NA	False	NA	NA	False	AATAAA	-34	NA	13428883	13399859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ES_00004597	chr10	-	1961	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428864	13399885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
ES_00004599	chr10	-	1535	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	-96	0	-73	0	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCAGAGAATGGCTG	NA	False	NA	NA	False	AATAAA	-17	NA	13744797	13528194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ES_00004600	chr10	-	6836	25	NIC	ENSMUSG00000039116.8	novel	6507	25	NA	NA	-148	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_20	10.9657769395921	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCAGTTCCTTTATGAG	NA	False	NA	-2	True	AATAAA	-25	NA	14421071	14278326	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14331881_14331966_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
ES_00004601	chr10	-	4482	24	FSM	ENSMUSG00000039116.8	ENSMUST00000238680.2	4482	24	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_19	18.4758566210825	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACACGCAGCCTAAGCATC	NA	False	NA	NA	False	NA	NA	NA	14420780	14280305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
ES_00004602	chr10	-	1985	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	0	-11	0	11	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTACTCTGGTATGGTT	NA	False	NA	NA	False	AATAAA	-33	NA	14581304	14530487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ES_00004606	chr10	-	850	3	FSM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	0	-4	0	4	multi-exon	FALSE	canonical	3	143	junction_1	12	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCTGTGTTTTGTCA	NA	False	NA	0	True	AATAAA	-26	NA	17899036	17887003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_17887565_17894586_17894654_17898814
ES_00004607	chr10	-	1190	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18110744	18089423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ES_00004608	chr10	-	2534	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	0	-279	0	279	multi-exon	FALSE	canonical	3	18	junction_1	22.796655456448	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTATCATTTGCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	18110726	18092252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ES_00004609	chr10	-	426	1	FSM	ENSMUSG00000111313.2	ENSMUST00000213578.2	1121	1	661	34	661	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGCTTTCTAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	18212328	18211902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18211900_18212300
ES_00004610	chr10	-	201	2	Antisense	novelGene_ENSMUSG00000039835.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATTTTAAGGGGGAAGG	NA	False	NA	NA	False	AAAAAG	-2	NA	18396032	18361038	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_18361113_18395905
ES_00004611	chr10	-	1665	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	163	707	-26	553	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATAAAGCTAAATGAGACA	NA	False	NA	NA	False	AGTAAA	-3	NA	18421661	18415952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
ES_00004612	chr10	-	3678	10	FSM	ENSMUSG00000020003.17	ENSMUST00000020182.16	8099	10	10	4411	10	2478	multi-exon	FALSE	canonical	3	127	junction_4	9.53874490281544	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATGATTTTTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	19783425	19734056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805_19762920_19764401_19764509_19769995_19770105_19770470_19770549_19780308_19780460_19781590_19781649_19783204
ES_00004613	chr10	-	3416	15	FSM	ENSMUSG00000019982.16	ENSMUST00000020158.9	3074	15	0	-342	0	1	multi-exon	FALSE	canonical	2	3	junction_10	4.58257569495584	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGATGTCTCTCGATTC	NA	False	NA	-3	True	AATAAA	-23	NA	21036883	21000832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_21002189_21015191_21015300_21016465_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21022084_21022340_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238_21032357_21036594
ES_00004614	chr10	-	3689	16	FSM	ENSMUSG00000019982.16	ENSMUST00000188495.8	3693	16	0	4	0	-4	multi-exon	FALSE	canonical	2	3	junction_11	4.59951688284276	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTTCCTGATGTCTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	21036804	21000837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_21002189_21015191_21015300_21016465_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21020867_21021225_21022084_21022340_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238_21032357_21036594
ES_00004616	chr10	-	639	3	Intergenic	novelGene_246	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	59.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCAGATTTTCAAGAT	NA	False	NA	NA	False	NA	NA	NA	21934523	21932778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_21933001_21933427_21933570_21934248
ES_00004618	chr10	-	829	2	FSM	ENSMUSG00000097327.8	ENSMUST00000069372.7	876	2	47	0	47	0	multi-exon	FALSE	canonical	3	41	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCCGGAGCCTTCGCGT	NA	False	NA	NA	False	NA	NA	NA	22025122	22020319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_22020414_22024387
ES_00004619	chr10	-	1661	1	FSM	ENSMUSG00000044268.5	ENSMUST00000181646.2	1137	1	-276	-248	-276	248	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCTTTCTTGAAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	22030591	22028930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_22028900_22030600
ES_00004620	chr10	-	424	1	FSM	ENSMUSG00000097295.2	ENSMUST00000181542.2	626	1	-40	242	-40	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGAGGAGCAATGTGGAA	9527	False	NA	NA	False	NA	NA	NA	22139306	22138882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_22138900_22139300
ES_00004621	chr10	-	1371	7	NNC	ENSMUSG00000071359.14	novel	2873	7	NA	NA	10	201	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	90.384364429548	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTAGAATGTTCTCCTCG	NA	False	NA	NA	False	NA	NA	NA	22607250	22581078	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587886_22607014
ES_00004624	chr10	-	688	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	-90	-104	0	89	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGACTGCCAAGGCTACA	NA	False	NA	30	True	NA	NA	NA	23663077	23660991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ES_00004625	chr10	-	474	4	FSM	ENSMUSG00000061983.8	ENSMUST00000218142.2	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	1924.28809346903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23662700	23661080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522
ES_00004626	chr10	-	627	6	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663077	23661080	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
ES_00004627	chr10	-	1796	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	0	-1	0	0	multi-exon	FALSE	canonical	3	2594	junction_2	565	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663100	23661080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_23662779_23662891_23662943_23663053
ES_00004628	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	7909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663173	23661080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ES_00004629	chr10	-	495	2	FSM	ENSMUSG00000061983.8	ENSMUST00000219783.2	488	2	0	-7	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23661892	23661095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_23661172_23661473
ES_00004630	chr10	-	663	2	FSM	ENSMUSG00000061983.8	ENSMUST00000218185.2	663	2	0	0	0	0	multi-exon	FALSE	canonical	3	4729	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGGGCAAACCACGGAAG	NA	False	NA	NA	False	AAGAAA	-35	NA	23662410	23661523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_23661576_23661799
ES_00004632	chr10	-	2303	2	FSM	ENSMUSG00000039166.17	ENSMUST00000100012.3	2321	2	18	0	18	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTCTTCTTTTCTTTCC	NA	False	NA	0	True	AATAAA	-19	NA	25076038	25044987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_25047147_25075894
ES_00004633	chr10	-	2838	6	NNC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	21029	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	58.7775467334253	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTCTTCTTTTCTTTCC	NA	False	NA	0	True	AATAAA	-19	NA	25150969	25044987	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_25047147_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25150849
ES_00004634	chr10	-	2292	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	3	110	junction_5	10.3430939199417	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTCTTCTTTTCTTTC	NA	False	NA	-1	True	AATAAA	-18	NA	25172965	25044988	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
ES_00004635	chr10	-	839	1	FSM	ENSMUSG00002076559.1	ENSMUST00020181774.1	253	1	-28	-558	-28	558	mono-exon	FALSE	NA	NA	NA	NA	NA	2692	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCTCTCTTGACCAGGT	NA	False	NA	NA	False	NA	NA	NA	25157778	25156939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_25156900_25157800
ES_00004641	chr10	-	3966	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	357	0	-38	0	multi-exon	FALSE	canonical	3	77	junction_2	74.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGTTTCAACTTTTC	NA	False	NA	2	True	AATAAA	-20	NA	29238081	29220171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_29223880_29230287_29230444_29237979
ES_00004643	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	66.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_29223880_29230287_29230444_29237959
ES_00004646	chr10	-	3694	2	FSM	ENSMUSG00000075266.6	ENSMUST00000216853.2	4143	2	0	449	0	-449	multi-exon	FALSE	canonical	3	2243	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCTTAGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	30076488	30071013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_30074576_30076356
ES_00004647	chr10	-	1532	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	0	0	0	multi-exon	FALSE	canonical	3	2101	junction_1	71	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGTGATTGTACTACA	NA	False	NA	NA	False	NA	NA	NA	30076556	30072004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_30073223_30074461_30074576_30076356
ES_00004648	chr10	-	2307	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	44	8	-10	-8	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAACCAGCGCCTATTTG	NA	False	NA	NA	False	AGTAAA	-13	NA	30476701	30410228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
ES_00004649	chr10	-	1715	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	52.8487628572059	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476673	30410710	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
ES_00004650	chr10	-	1613	11	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_9	57.934100493578	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGTGATACTCAGTATT	NA	False	NA	-3	True	AATAAA	-22	NA	30476646	30410711	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30473735_30473802_30476585
ES_00004658	chr10	-	1311	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	0	-3	0	3	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGATCTTTTATTTCTTT	NA	False	NA	0	True	ATTAAA	-20	NA	31321954	31208368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ES_00004659	chr10	-	1326	8	FSM	ENSMUSG00000000296.9	ENSMUST00000213528.2	969	8	-103	-254	0	3	multi-exon	FALSE	canonical	3	22	junction_3	226.139563192327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGATCTTTTATTTCTTT	NA	False	NA	0	True	ATTAAA	-20	NA	31321954	31208368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31219007_31219023_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ES_00004660	chr10	-	1291	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	-180	-284	-19	3	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGATCTTTTATTTCTTT	NA	False	NA	0	True	ATTAAA	-20	NA	31321973	31208368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ES_00004661	chr10	-	11013	6	FSM	ENSMUSG00000063760.10	ENSMUST00000081989.8	11013	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	4.8	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTCATGTCTTTTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	31485180	31369188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_31378728_31379746_31379819_31381768_31381971_31393379_31393545_31410658_31410893_31484379
ES_00004664	chr10	-	1879	9	FSM	ENSMUSG00000039531.9	ENSMUST00000218275.2	1872	9	0	-7	0	1	multi-exon	FALSE	canonical	3	7	junction_5	25.4923395356331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGGTTTCTTGTCTATG	NA	False	NA	0	True	AATAAA	-21	NA	33825856	33795136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33816153_33816276_33819645_33819757_33824924_33825495_33825743
ES_00004666	chr10	-	1960	10	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	39	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_9	22.9540604009158	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827152	33795137	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33827126
ES_00004667	chr10	-	2274	12	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	27.9766726912982	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGTTTTGGTTTCTTGT	NA	False	NA	-5	True	AATAAA	-16	NA	33827218	33795141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33826478_33826614_33827126
ES_00004669	chr10	-	2991	10	FSM	ENSMUSG00000039531.9	ENSMUST00000048222.6	2991	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	17.0301113137297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGAAGATAGCCAAATG	NA	False	NA	NA	False	NA	NA	NA	33827218	33802314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ES_00004672	chr10	-	911	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	186	-3	186	3	multi-exon	FALSE	canonical	3	41	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTCCCAAGTTTTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	34003794	34002059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_34002563_34003386
ES_00004673	chr10	-	3901	6	NNC	ENSMUSG00000039497.9	novel	4389	6	NA	NA	-152	2	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_4	68.2026392451201	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTCCTGCTCTGGTGTG	NA	False	NA	-8	True	AATAAA	-16	NA	34083225	34027386	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059691_34060157_34083075
ES_00004674	chr10	-	4389	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTCCTGCTCTGGTG	NA	False	NA	-10	True	AATAAA	-14	NA	34083711	34027388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
ES_00004675	chr10	-	471	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	0	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109527	34106209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_34106388_34106902_34107071_34109402
ES_00004676	chr10	-	636	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-80	693	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	24.9131825880731	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109607	34106209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_34106388_34106902_34107071_34107314_34107400_34109402
ES_00004678	chr10	-	2729	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	0	-2	0	2	multi-exon	FALSE	canonical	3	28	junction_7	20.4676725553911	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGTATTATTGAATATT	NA	False	NA	1	True	AATAAA	-19	NA	34294535	34179602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ES_00004681	chr10	-	809	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	-47	-1	0	1	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGCTTCGTAATACC	NA	False	NA	NA	False	AATAAA	-16	NA	34294524	34273062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ES_00004683	chr10	-	3240	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	0	-22	0	22	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACAGGGAAATATCTG	NA	False	NA	NA	False	NA	NA	NA	35587888	35584648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_35584600_35587900
ES_00004684	chr10	-	2619	4	NNC	ENSMUSG00000069662.6	novel	4048	2	NA	NA	0	36427	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	159.80613254816	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTATCTCGATGAAGAG	NA	False	NA	NA	False	NA	NA	NA	37014916	36972943	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_36972986_37010817_37011542_37011565_37012932_37014429
ES_00004686	chr10	-	832	5	FSM	ENSMUSG00000051736.9	ENSMUST00000063204.9	745	5	0	-87	0	87	multi-exon	FALSE	canonical	3	17	junction_3	5.93190525885234	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTACTTCACACTAGTAC	NA	False	NA	85	True	NA	NA	NA	39009902	38994712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_38995031_38996253_38996393_38998172_38998332_39008242_39008375_39009818
ES_00004687	chr10	-	776	5	FSM	ENSMUSG00000051736.9	ENSMUST00000139743.8	679	5	-6	-91	0	87	multi-exon	FALSE	canonical	2	3	junction_4	11.5190060335083	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTACTTCACACTAGTAC	NA	False	NA	85	True	NA	NA	NA	39009902	38994712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_38995031_38996253_38996393_38998172_38998332_39008242_39008375_39009874
ES_00004690	chr10	-	228	2	Antisense	novelGene_ENSMUSG00000019841.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	84	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTGCAACAAGGTGCAAA	NA	False	NA	NA	False	NA	NA	NA	39676794	39646657	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_39646833_39676741
ES_00004691	chr10	-	3976	5	FSM	ENSMUSG00000096687.9	ENSMUST00000178045.9	3990	5	0	14	0	-14	multi-exon	FALSE	canonical	0	0	junction_4	6.80073525436772	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTGTGACTGTTG	NA	False	NA	NA	False	AATAAA	-12	NA	39775211	39766022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39771507_39771993_39774909
ES_00004692	chr10	-	3527	4	FSM	ENSMUSG00000096687.9	ENSMUST00000178563.3	3528	4	-13	14	-13	-14	multi-exon	FALSE	canonical	2	5	junction_3	4.98887651569859	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTGTGACTGTTG	NA	False	NA	NA	False	AATAAA	-12	NA	39775247	39766022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39774909
ES_00004693	chr10	-	5397	6	FSM	ENSMUSG00000019838.12	ENSMUST00000092566.8	5397	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	3.87814388593306	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTGTGATTGTGTTTCT	7143	False	NA	NA	False	AATAAA	-22	NA	40018250	39909527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_39913401_39916594_39916824_39932482_39932627_39952559_39953014_39956658_39956804_40017698
ES_00004694	chr10	-	2311	3	FSM	ENSMUSG00000019838.12	ENSMUST00000213488.2	2325	3	1	13	0	-13	multi-exon	FALSE	canonical	3	21	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAAAACAGCGTTTGC	7143	False	NA	NA	False	AATAAA	-14	NA	40018250	39951399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_39953014_39956658_39956804_40017698
ES_00004695	chr10	-	1242	1	FSM	ENSMUSG00000111045.2	ENSMUST00000214034.2	3036	1	-4	1798	-4	-1798	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTTTTTATGAAGGTAT	NA	False	NA	NA	False	NA	NA	NA	40059692	40058450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_40058400_40059700
ES_00004697	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6557	False	NA	42	True	TTTAAA	-17	NA	40123032	40099422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ES_00004698	chr10	-	2534	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	0	-8	0	8	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGGTTGCATCTAAATC	8586	False	NA	-23	True	AATAAA	-23	NA	40133667	40123690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ES_00004699	chr10	-	887	6	FSM	ENSMUSG00000019837.9	ENSMUST00000019982.9	887	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	179.465205541353	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGACCTGGATTCGATTT	8581	False	NA	NA	False	NA	NA	NA	40133672	40125345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133571
ES_00004700	chr10	-	3211	8	FSM	ENSMUSG00000075232.7	ENSMUST00000238969.2	3206	8	0	-5	0	5	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTTTGGTGTCTACT	NA	False	NA	0	True	AATAAA	-34	NA	40178184	40163448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ES_00004705	chr10	-	1602	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366336	41363167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
ES_00004706	chr10	-	2940	12	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-57	560	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	60.5360353033458	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTATGTACAGCCATGCC	69	False	NA	NA	False	NA	NA	NA	41685924	41594275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
ES_00004707	chr10	-	2435	11	NNC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-5570	90	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_10	58.0965575572254	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCGTTTGGGAGGCAGAG	5942	False	NA	95	True	NA	NA	NA	41628204	41594745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
ES_00004709	chr10	-	2233	11	FSM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	0	-1	0	0	multi-exon	FALSE	canonical	3	12	junction_10	72.0486641097529	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGAAATATTCTGGGA	129	False	NA	5	True	AATAAA	-26	NA	41685864	41594835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
ES_00004710	chr10	-	2334	11	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-5608	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_8	73.1956282847548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5904	False	NA	4	True	AATAAA	-25	NA	41628242	41594836	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41628007
ES_00004711	chr10	-	2173	10	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_9	73.7545144046229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	97	False	NA	4	True	AATAAA	-25	NA	41685896	41594836	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685783
ES_00004717	chr10	-	2514	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	0	-1	0	1	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTGTCTGATTCATTT	NA	False	NA	2	True	AATAAA	-19	NA	42354561	42188579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
ES_00004721	chr10	-	429	1	FSM	ENSMUSG00000019797.12	ENSMUST00000214198.2	2842	1	1232	1181	1232	-1181	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTTGTTTAGTTTGGGT	NA	False	NA	NA	False	GGGGCT	-40	NA	43415730	43415301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_43415300_43415700
ES_00004722	chr10	-	1979	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	2	0	2	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	TATAAA	-6	NA	43777739	43750183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ES_00004724	chr10	-	5287	8	NNC	ENSMUSG00000038151.14	novel	5281	8	NA	NA	-59	55463	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.9428812334206	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGAGGATGCTGGATTAG	NA	False	NA	NA	False	NA	NA	NA	44334803	44257709	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_44257736_44313172_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44334462
ES_00004725	chr10	-	5329	7	FSM	ENSMUSG00000038151.14	ENSMUST00000105490.3	4025	7	-181	-1123	-120	7	multi-exon	FALSE	canonical	3	20	junction_6	13.6218778278017	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTCTAGTGTCTTGAA	NA	False	NA	0	True	ATTAAA	-25	NA	44334864	44313165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44334462
ES_00004726	chr10	-	285	1	ISM	ENSMUSG00000111868.2	ENSMUST00000214570.2	2762	3	13912	1197	13912	-1197	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAGGGTTCTTAGTCAC	NA	False	NA	NA	False	NA	NA	NA	44728970	44728685	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_44728700_44729000
ES_00004728	chr10	-	5529	6	NIC	ENSMUSG00000063804.9	novel	5402	5	NA	NA	-71	-11	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	6.46838465151849	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGTTTGGAGATATTTT	NA	False	NA	-11	True	AATAAA	-22	NA	45362562	45252726	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_45257528_45295232_45295305_45296619_45296805_45345132_45345315_45352443_45352493_45362322
ES_00004729	chr10	-	608	4	FSM	ENSMUSG00000063804.9	ENSMUST00000215708.2	1382	4	0	774	0	-774	multi-exon	FALSE	canonical	1	1	junction_3	27.6526068692749	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTATGGCTTGGGCAAC	NA	False	NA	NA	False	NA	NA	NA	45362491	45295232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_45295305_45296619_45296805_45345132_45345315_45362322
ES_00004732	chr10	-	2586	1	FSM	ENSMUSG00000112550.2	ENSMUST00000218299.2	2386	1	-23	-177	-23	177	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTGTTTTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	52219776	52217190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_52217200_52219800
ES_00004734	chr10	-	2940	1	FSM	ENSMUSG00000049576.7	ENSMUST00000180673.2	3420	1	465	15	-36	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTTAGAAAATCTTGTT	NA	False	NA	NA	False	NA	NA	NA	52421370	52418430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_52418400_52421400
ES_00004735	chr10	-	7383	13	FSM	ENSMUSG00000038594.10	ENSMUST00000220443.2	7425	13	44	-2	44	2	multi-exon	FALSE	canonical	2	8	junction_7	3.73794358200097	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTCATGGTGCCTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	53255999	53149536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_53154341_53157444_53157677_53159932_53160041_53167859_53167911_53168353_53168472_53172309_53172465_53174148_53174302_53177597_53177778_53188603_53188722_53195693_53195816_53224567_53225356_53234144_53234304_53255604
ES_00004737	chr10	-	5082	13	FSM	ENSMUSG00000003746.17	ENSMUST00000003843.16	5137	13	50	5	-9	-5	multi-exon	TRUE	canonical	3	6	junction_11	2.28977194400568	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTCTGTGTCTTGTCA	5533	False	NA	NA	False	AATAAA	-14	NA	53951842	53780885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138_53796359_53801525_53801642_53809587_53809682_53810984_53811109_53853118_53853214_53890510_53890592_53901809_53901926_53906793_53906891_53950511_53951367_53951621
ES_00004739	chr10	-	695	1	FSM	ENSMUSG00000071303.5	ENSMUST00000172445.4	624	1	-25	-46	-25	46	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATATATATACATAAATA	NA	False	NA	NA	False	AATAAA	-22	NA	56231195	56230500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_56230500_56231200
ES_00004741	chr10	-	2871	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	9	0	9	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408617	57391869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ES_00004743	chr10	-	4005	9	ISM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	94	22485	94	8	5prime_fragment	FALSE	canonical	3	43	junction_1	6.39824194603486	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCCTAAAATGTGTT	NA	False	NA	-21	True	AATAAA	-23	NA	59057575	58999933	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
ES_00004747	chr10	-	1759	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	0	-4	0	4	multi-exon	FALSE	canonical	3	721	junction_1	4.5	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTCATCGGCGCCATAAA	NA	False	NA	0	True	AATAAA	-21	NA	59787656	59785486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_59786852_59787138_59787395_59787518
ES_00004749	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838933	59823729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
ES_00004750	chr10	-	566	3	FSM	ENSMUSG00000020107.11	ENSMUST00000182912.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	171	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	59838908	59824300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_59824661_59826654_59826730_59838777
ES_00004752	chr10	-	5321	6	FSM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	-81	0	-69	0	multi-exon	FALSE	canonical	3	34	junction_2	5.08330601085553	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTGGTGTCTCCATT	NA	False	NA	-5	True	AATAAA	-21	NA	60588642	60547850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164_60586464_60588512
ES_00004753	chr10	-	4103	15	FSM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	0	-1	0	1	multi-exon	FALSE	canonical	3	186	junction_14	78.4471744785844	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGATGGTTGATTTTTA	NA	False	NA	-1	True	AATAAA	-17	NA	60983423	60934419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
ES_00004754	chr10	-	4071	15	FSM	ENSMUSG00000020097.15	ENSMUST00000092498.12	4070	15	0	-1	0	1	multi-exon	FALSE	canonical	3	155	junction_14	85.0811437417726	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGATGGTTGATTTTTA	NA	False	NA	-1	True	AATAAA	-17	NA	60983453	60934419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
ES_00004756	chr10	-	5187	22	FSM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	0	1	0	-1	multi-exon	FALSE	canonical	2	7	junction_20	4.41446807041021	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTGCCCTTGGTGTTTTG	4942	False	NA	-5	True	TTTAAA	-18	NA	61109217	61032891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366_61047448_61048902_61049027_61049308_61049443_61054136_61054313_61057636_61057786_61058562_61058677_61060051_61060185_61061115_61061260_61062885_61062992_61065434_61065583_61066196_61066281_61081704_61081896_61085382_61085540_61106635_61107037_61108934
ES_00004758	chr10	-	4275	20	FSM	ENSMUSG00000020092.10	ENSMUST00000020289.10	4282	20	10	-3	10	3	multi-exon	FALSE	canonical	3	320	junction_14	26.6759563689748	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGATTGGTCTTCAG	NA	False	NA	2	True	ATTAAA	-25	NA	61219299	61155431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
ES_00004761	chr10	-	2927	10	NNC	ENSMUSG00000020086.7	novel	2175	9	NA	NA	-3534	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	99.4508377833111	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61623460	61574443	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561_61620556_61623337
ES_00004762	chr10	-	872	2	ISM	ENSMUSG00000058806.16	ENSMUST00000105454.3	3162	41	-22	123033	-22	-112408	5prime_fragment	FALSE	canonical	3	16	junction_1	0	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGTCAGATCGGCAATC	NA	False	NA	NA	False	NA	NA	NA	61814909	61797047	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_61797138_61814127
ES_00004763	chr10	-	1765	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	1	3	1	-3	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCCTGCAGATCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	61946828	61943436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
ES_00004765	chr10	-	1139	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	8	-12	8	12	multi-exon	FALSE	canonical	3	38	junction_2	41.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGACTCACGGCTGCCC	NA	False	NA	2	True	AATAAA	-33	NA	61946821	61943976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61944903_61945662_61945792_61946737
ES_00004766	chr10	-	3635	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	0	3	0	-3	multi-exon	FALSE	canonical	3	242	junction_7	11.6303613925986	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTGTCTGGTGTTTTA	4876	False	NA	NA	False	NA	NA	NA	62067030	62021177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
ES_00004769	chr10	-	5953	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	-8	-1667	-8	1667	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGCTTCTTCTCCCAGT	NA	False	NA	NA	False	AATACA	-3	NA	62176329	62102966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
ES_00004770	chr10	-	202	1	Intergenic	novelGene_305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAAAGCCTTGGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	62263412	62263210	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_62263200_62263400
ES_00004771	chr10	-	2604	15	FSM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_12	41.8359283147773	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTTGTAATTGCCTT	NA	False	NA	95	True	AATAGA	-18	NA	62285517	62264987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ES_00004773	chr10	-	2496	2	FSM	ENSMUSG00000020079.16	ENSMUST00000159042.2	890	2	-1606	0	553	0	multi-exon	FALSE	canonical	3	376	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGACCCCGACTCCGAT	NA	False	NA	-87	True	NA	NA	NA	62268353	62265221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62265614_62266249
ES_00004774	chr10	-	2602	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	-5	0	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5198	False	NA	-6	True	AATAAA	-17	NA	62322584	62291050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ES_00004777	chr10	-	2469	7	FSM	ENSMUSG00000036955.17	ENSMUST00000065887.14	2472	7	0	3	0	1	multi-exon	FALSE	canonical	3	136	junction_2	17.3629554575891	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTACTTTTATTACCTCT	8201	False	NA	-3	True	AATAAA	-19	NA	62414236	62394251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177_62406258_62410828_62410928_62413742
ES_00004778	chr10	-	4722	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTCTTGGTGGCTTTT	NA	False	NA	-5	True	AATAAA	-18	NA	62438060	62416029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
ES_00004779	chr10	-	2535	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8106	False	NA	-11	True	ATTAAA	-28	NA	62486997	62451793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ES_00004780	chr10	-	2629	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8122	False	NA	-11	True	ATTAAA	-28	NA	62486981	62451793	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
ES_00004784	chr10	-	4889	25	FSM	ENSMUSG00000020074.8	ENSMUST00000020268.7	4352	25	-537	0	-482	0	multi-exon	FALSE	canonical	0	0	junction_11	99.9008883844383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAGTTCCTTCAGAA	NA	False	NA	0	True	ATTAAA	-18	NA	62628547	62579706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627983
ES_00004785	chr10	-	4396	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	0	-534	0	0	multi-exon	TRUE	canonical	0	0	junction_11	85.6392222576133	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAGTTCCTTCAGAA	NA	False	NA	0	True	ATTAAA	-18	NA	62628065	62579706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ES_00004786	chr10	-	4530	25	NIC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	100.456449588311	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAGTTCCTTCAGAA	NA	False	NA	0	True	ATTAAA	-18	NA	62628113	62579706	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
ES_00004787	chr10	-	2214	4	FSM	ENSMUSG00000020074.8	ENSMUST00000218552.2	2214	4	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_2	18.9091394715771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTGTAATTTCCAAGATA	1500	False	NA	-1	True	GATAAA	-30	NA	62600815	62588953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218
ES_00004788	chr10	-	571	3	FSM	ENSMUSG00000020074.8	ENSMUST00000220236.2	589	3	18	0	18	0	multi-exon	FALSE	canonical	3	330	junction_2	22.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	6205	False	NA	-99	True	AAAAAG	-39	NA	62596110	62589051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62589193_62592261_62592454_62595872
ES_00004792	chr10	-	1078	2	FSM	ENSMUSG00000020074.8	ENSMUST00000218945.2	1078	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAGAAATGAGCTGG	8659	False	NA	NA	False	NA	NA	NA	62607755	62605758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62606796_62607714
ES_00004795	chr10	-	600	1	FSM	ENSMUSG00000112806.2	ENSMUST00000218355.2	1431	1	591	240	591	-240	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTCAAGGCTGCCTATA	NA	False	NA	NA	False	NA	NA	NA	62618375	62617775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62617800_62618400
ES_00004797	chr10	-	14347	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_12	54.9749311555327	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCACCTGGTAGTCTAT	2991	False	NA	-6	True	AATAAA	-14	NA	62723103	62640355	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62722950
ES_00004799	chr10	-	14549	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_3	53.2569765904483	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTAGTCTATTTTTTTC	NA	False	NA	1	True	AATAAA	-21	NA	62728821	62640348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62728473
ES_00004802	chr10	-	2224	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	-11	0	11	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAATATGTTGTGTTAGT	5781	False	NA	-4	True	AATAAA	-26	NA	62859673	62850431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
ES_00004803	chr10	-	1484	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_9	143.298789980504	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5828	False	NA	-6	True	AATAAA	-15	NA	62859626	62851206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859416
ES_00004804	chr10	-	1633	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5458	False	NA	-6	True	AATAAA	-15	NA	62859996	62851206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
ES_00004805	chr10	-	682	3	FSM	ENSMUSG00000020069.17	ENSMUST00000119814.3	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	86.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATGAGACTTGGTTTT	5828	False	NA	NA	False	AATAAA	-34	NA	62859626	62853585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62854005_62855171_62855307_62859498
ES_00004807	chr10	-	3927	9	FSM	ENSMUSG00000020063.17	ENSMUST00000020257.13	3905	9	0	-22	0	20	multi-exon	FALSE	canonical	3	191	junction_8	29.4870204496826	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCCCAGTAAGGGTTGCT	NA	False	NA	22	True	NA	NA	NA	63174811	63154763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63172758_63172876_63174343
ES_00004808	chr10	-	3740	8	FSM	ENSMUSG00000020063.17	ENSMUST00000105442.3	3740	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	79.0360289839452	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGTTTTAAAGTCTTAT	NA	False	NA	-2	True	AATACA	-22	NA	63174814	63154836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63174343
ES_00004811	chr10	-	390	2	FSM	ENSMUSG00000097134.3	ENSMUST00000219021.2	388	2	0	-2	0	2	multi-exon	FALSE	canonical	3	19	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAACCTCTAACTTTAAA	NA	False	NA	NA	False	AATAAA	-19	NA	66753518	66751412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_66751739_66753454
ES_00004814	chr10	-	1209	5	NNC	ENSMUSG00000019873.9	novel	838	3	NA	NA	-11063	-20	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	83.8107988268815	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCTTCTTATCTATAAAA	NA	False	NA	NA	False	ATTAAA	-1	NA	66884164	66864724	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_66865466_66870377_66870492_66871663_66871785_66875279_66875357_66884008
ES_00004815	chr10	-	1837	5	NNC	ENSMUSG00000075000.12	novel	1813	4	NA	NA	0	12066	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.4008685234718	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAAAACAACCTTAGATC	NA	False	NA	NA	False	NA	NA	NA	67121084	67090401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_67090428_67102469_67103946_67105884_67105926_67111348_67111434_67120875
ES_00004818	chr10	-	4558	1	FSM	ENSMUSG00000057134.7	ENSMUST00000075686.7	4558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAGAAATAATGTTGCTTA	NA	False	NA	NA	False	AATAAA	-17	NA	67384898	67380340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_67380300_67384900
ES_00004821	chr10	-	7240	7	FSM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-281	-3934	-281	0	multi-exon	TRUE	canonical	3	87	junction_6	21.5303403492735	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGTGTCTGTCTCTTAT	NA	False	NA	-4	True	AATAAA	-23	NA	67972737	67928349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
ES_00004823	chr10	-	1234	9	NNC	ENSMUSG00000019942.14	novel	1253	9	NA	NA	0	22348	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	739.545257235823	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	69188740	69148627	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_69148666_69174126_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
ES_00004824	chr10	-	1226	9	NNC	ENSMUSG00000019942.14	novel	1253	9	NA	NA	0	22348	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.545257235823	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	69188740	69148627	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_69148660_69174128_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
ES_00004825	chr10	-	1221	9	NNC	ENSMUSG00000019942.14	novel	1253	9	NA	NA	0	22348	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.545257235823	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	69188740	69148627	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_69148661_69174134_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
ES_00004826	chr10	-	4375	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	0	0	0	0	multi-exon	FALSE	canonical	3	2056	junction_1	102.156542539739	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGACTTAAGCAGATGTTT	NA	False	NA	4	True	AATAAA	-23	NA	69188768	69170975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
ES_00004830	chr10	-	2880	5	FSM	ENSMUSG00000037747.10	ENSMUST00000046513.10	2877	5	0	-3	0	3	multi-exon	FALSE	canonical	3	11	junction_1	4.33012701892219	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTAGCAGGTAGCCTGCC	NA	False	NA	NA	False	AATAAA	-27	NA	70435121	70393508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_70395612_70401003_70401122_70404731_70404907_70406652_70406850_70434834
ES_00004832	chr10	-	4218	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	-48	-3	-48	3	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	1140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTTTTTTTTTTTTTA	NA	False	NA	NA	False	ATTAAA	-21	NA	71074158	71061290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
ES_00004834	chr10	-	1076	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	8	0	-8	multi-exon	FALSE	canonical	3	1606	junction_1	82	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCATCTCTGTGGCTC	1253	False	NA	-1	True	AATAAA	-19	NA	71180784	71166317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_71166957_71172043_71172250_71180553
ES_00004835	chr10	-	5266	1	Intergenic	novelGene_325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAACCACACTGCCAAGT	NA	False	NA	NA	False	NA	NA	NA	74555797	74550531	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_74550500_74555800
ES_00004836	chr10	-	460	2	Intergenic	novelGene_328	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	74556169	74550610	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_74551002_74556100
ES_00004839	chr10	-	3221	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	11	-81	0	81	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTGCTTCCTCTGCTC	NA	False	NA	-4	True	NA	NA	NA	75479814	75472458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
ES_00004840	chr10	-	3349	14	FSM	ENSMUSG00000006342.16	ENSMUST00000218896.2	3348	14	0	-1	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.6059564384876	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTTCCCGTCTGTTTGT	NA	False	NA	-1	True	NA	NA	NA	75479842	75472539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
ES_00004842	chr10	-	7345	37	NIC	ENSMUSG00000020196.11	novel	7417	37	NA	NA	12	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	18.2485201497086	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTCTTTGCTCATCCT	NA	False	NA	-2	True	AATAAA	-15	NA	75600163	75481943	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549373_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
ES_00004845	chr10	-	1886	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	-6	0	-6	0	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGCTTCTGGATCCT	NA	False	NA	5	True	AATAAA	-23	NA	75617254	75609948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
ES_00004848	chr10	-	686	3	FSM	ENSMUSG00000033318.8	ENSMUST00000218034.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	8.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGCTGACAGCATGGCG	NA	False	NA	NA	False	NA	NA	NA	75668970	75667892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75667929_75668228_75668403_75668494
ES_00004851	chr10	-	600	2	FSM	ENSMUSG00000033307.8	ENSMUST00000218267.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTGAGCCTCGCTCCA	NA	False	NA	-107	True	NA	NA	NA	75696026	75695283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75695378_75695520
ES_00004853	chr10	-	1670	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	-10	0	10	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAAACTGAGAGCCAGGA	6861	False	NA	8	True	AATAAA	-30	NA	75757451	75732592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
ES_00004854	chr10	-	1630	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	-8	0	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6864	False	NA	-2	True	AATAAA	-20	NA	75757448	75732602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
ES_00004855	chr10	-	1798	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	-5	0	5	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTTTTCTTTGCAAT	5083	False	NA	2	True	ATTAAA	-22	NA	75768309	75759050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ES_00004857	chr10	-	714	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCCCCCCCCCACTC	4977	False	NA	NA	False	NA	NA	NA	75776445	75774009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
ES_00004860	chr10	-	1969	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4507	-1138	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	1784	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACAAAGGTAAATGACCG	NA	False	NA	NA	False	TATAAA	-10	NA	75951302	75894465	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
ES_00004862	chr10	-	2017	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	0	-1	0	1	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTGTTCTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	76073671	76043059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
ES_00004863	chr10	-	2020	11	FSM	ENSMUSG00000020230.16	ENSMUST00000099571.10	2052	11	28	4	0	1	multi-exon	FALSE	canonical	2	4	junction_10	3.8262252939418	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTGTTCTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	76073671	76043059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072659_76073583
ES_00004864	chr10	-	6417	38	FSM	ENSMUSG00000020231.16	ENSMUST00000036033.14	6322	38	-95	0	-64	0	multi-exon	FALSE	canonical	3	16	junction_36	7.13728468849439	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	NA	False	NA	-14	True	AATAAA	-16	NA	76181189	76098884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366_76108538_76108868_76109038_76109982_76110114_76110822_76110933_76112162_76112275_76112417_76112540_76114321_76114446_76115539_76115621_76115690_76115801_76116509_76116712_76118346_76118462_76121359_76121488_76122195_76122277_76123146_76123284_76126841_76126982_76128145_76128261_76130327_76130448_76131900_76131995_76132186_76132252_76133588_76133692_76134086_76134197_76134503_76134628_76135736_76135848_76138037_76138130_76140849_76141048_76142906_76143027_76149009_76149139_76153700_76153929_76155300_76155421_76157323_76157441_76163535_76163608_76180940
ES_00004866	chr10	-	9310	41	NNC	ENSMUSG00000001151.11	novel	9341	42	NA	NA	27	14	intron_retention	TRUE	canonical	3	35	junction_29	45.1796345160073	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTGTAACTCTTTTAT	NA	False	NA	-2	True	AATAAA	-32	NA	76278593	76187082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254404_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ES_00004867	chr10	-	9380	41	NIC	ENSMUSG00000001151.11	novel	9341	42	NA	NA	-46	14	intron_retention	FALSE	canonical	3	73	junction_29	43.2194328398696	2063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTGTAACTCTTTTAT	NA	False	NA	-2	True	AATAAA	-32	NA	76278666	76187082	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ES_00004868	chr10	-	498	3	FSM	ENSMUSG00000001151.11	ENSMUST00000218747.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	34.5	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCCAAAGCAGATAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	76203370	76192081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76192231_76192868_76192989_76203141
ES_00004871	chr10	-	3936	32	NNC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	149	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.0574116415631	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTGCCTCTTTATCTAC	8591	False	NA	-1	True	AATAAA	-14	NA	76561853	76544626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556877_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
ES_00004873	chr10	-	2175	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-161	-1	-62	1	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGACTTCTCTCTGC	1075	False	NA	-2	True	AATAAA	-19	NA	76797783	76597689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ES_00004874	chr10	-	2172	16	NIC	ENSMUSG00000001120.16	novel	2544	19	NA	NA	-62	1	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.7172229965202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGACTTCTCTCTGC	1075	False	NA	-2	True	AATAAA	-19	NA	76797783	76597689	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606871_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ES_00004877	chr10	-	5063	42	NNC	ENSMUSG00000001435.16	novel	5063	42	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_6	49.9834594889811	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTATAAGCTGCCTTCC	5935	False	NA	3	True	AATAAA	-23	NA	77002382	76888008	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894662_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ES_00004878	chr10	-	5300	41	FSM	ENSMUSG00000001435.16	ENSMUST00000072755.12	5595	41	295	0	54	0	multi-exon	FALSE	canonical	1	2	junction_40	66.649826518904	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTGCCAGCTAGGGTG	NA	False	NA	NA	False	NA	NA	NA	76949485	76889027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_76948051
ES_00004879	chr10	-	6548	11	FSM	ENSMUSG00000020262.16	ENSMUST00000020496.14	6549	11	0	1	0	0	multi-exon	FALSE	canonical	2	18	junction_4	10.2024506859872	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATGGACATTTTCCTT	NA	False	NA	NA	False	AATAAA	-22	NA	77254099	77126560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
ES_00004880	chr10	-	3289	4	FSM	ENSMUSG00000020262.16	ENSMUST00000150227.8	3289	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	14.8398861930347	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTTTCAAAG	NA	False	NA	NA	False	GATAAA	-32	NA	77254072	77158624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77161526_77161699_77161775_77195400_77195570_77253928
ES_00004881	chr10	-	704	3	FSM	ENSMUSG00000020262.16	ENSMUST00000156583.8	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTTGATTGACTCACA	NA	False	NA	NA	False	AATAAA	-35	NA	77254051	77161362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77161775_77195400_77195570_77253928
ES_00004882	chr10	-	2401	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	-7	0	7	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGGCTTTCCTGACTT	NA	False	NA	0	True	AATAAA	-33	NA	77351619	77322487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ES_00004884	chr10	-	267	1	FSM	ENSMUSG00000112007.2	ENSMUST00000219972.2	616	1	291	58	291	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGCCGTGCAGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	77488902	77488635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77488600_77488900
ES_00004889	chr10	-	1266	7	FSM	ENSMUSG00000000731.16	ENSMUST00000143548.8	1265	7	0	-1	0	0	multi-exon	FALSE	canonical	1	1	junction_4	6.36177822799744	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTGGATGTTTGTTT	NA	False	NA	0	True	ATTAAA	-25	NA	77874092	77865855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77870542_77871490_77871668_77872518_77872619_77873706
ES_00004891	chr10	-	3874	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	0	-2	0	2	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTCTGTGTGTGGTA	NA	False	NA	-3	True	AATACA	-19	NA	78020983	78006740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
ES_00004894	chr10	-	615	5	FSM	ENSMUSG00000000374.9	ENSMUST00000217980.2	676	5	61	0	61	0	multi-exon	FALSE	canonical	1	1	junction_2	6.17960354715414	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTCACAGTACGTGGT	NA	False	NA	NA	False	NA	NA	NA	78080395	78053020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78053096_78056022_78056219_78064612_78064749_78067287_78067370_78080269
ES_00004895	chr10	-	5975	10	FSM	ENSMUSG00000001211.16	ENSMUST00000001240.12	5980	10	0	5	0	-5	multi-exon	FALSE	canonical	3	264	junction_9	65.0870262621847	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGTGACTCTCTGCCTC	NA	False	NA	-8	True	CATAAA	-17	NA	78188276	78105016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78188046
ES_00004896	chr10	-	3639	11	NIC	ENSMUSG00000001211.16	novel	3513	11	NA	NA	39	-2	combination_of_known_junctions	FALSE	canonical	3	187	junction_10	110.528910245239	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAATAATGCTTTTTCTC	NA	False	NA	-15	True	AATAAA	-3	NA	78188237	78107398	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78188046
ES_00004901	chr10	-	1989	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	2	-7	2	5	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCCCATTTTTGGATG	NA	False	NA	-12	True	AATAAA	-26	NA	78248875	78236212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
ES_00004904	chr10	-	3288	8	FSM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	1	-1	1	1	multi-exon	TRUE	canonical	3	17	junction_5	4.14039335605413	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGACTGAGTCCTTGGG	NA	False	NA	2	True	AATAAA	-16	NA	78427797	78420335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78423292_78424540_78424756_78424934_78425580_78425735_78426078_78427635
ES_00004905	chr10	-	880	1	FSM	ENSMUSG00000112017.2	ENSMUST00000217691.2	1379	1	524	-25	524	25	mono-exon	FALSE	NA	NA	NA	NA	NA	434	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTACAGTCCCCACGT	NA	False	NA	NA	False	NA	NA	NA	78465610	78464730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78464700_78465600
ES_00004907	chr10	-	1607	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	2	0	2	0	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369624	79362263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
ES_00004908	chr10	-	1649	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	0	5	0	0	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCATGCATGTTGATTT	NA	False	NA	-5	True	TATAAA	-17	NA	79369630	79362268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
ES_00004909	chr10	-	3075	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	6	0	intron_retention	FALSE	canonical	3	38	junction_13	53.1463314291654	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCTCATGGATTCC	NA	False	NA	-4	True	ATTAAA	-15	NA	79390905	79376079	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390379
ES_00004910	chr10	-	2562	14	FSM	ENSMUSG00000042570.15	ENSMUST00000062855.15	2562	14	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	62.0923153160017	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390925	79376078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384738_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ES_00004911	chr10	-	2601	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	75	0	-3	0	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390958	79376078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ES_00004912	chr10	-	1401	2	FSM	ENSMUSG00000042570.15	ENSMUST00000168601.2	931	2	205	-675	0	0	multi-exon	FALSE	canonical	3	200	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCTCATGGATTCC	NA	False	NA	-4	True	ATTAAA	-15	NA	79377794	79376079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79377034_79377347
ES_00004914	chr10	-	677	5	FSM	ENSMUSG00000042570.15	ENSMUST00000167183.8	677	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	93.6359306035883	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAACCAGAGTGGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	79390948	79384635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79384738_79385017_79385144_79385370_79385688_79386149_79386241_79390907
ES_00004920	chr10	-	3943	13	FSM	ENSMUSG00000020312.13	ENSMUST00000020564.7	3243	13	31	-731	31	130	multi-exon	FALSE	canonical	3	15	junction_3	3.42681419915868	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGCCTACCTTACTCAT	NA	False	NA	NA	False	NA	NA	NA	79473721	79453754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79455934_79456887_79457022_79458088_79458400_79459660_79459826_79461926_79461991_79462088_79462255_79462633_79462761_79462853_79462906_79463028_79463083_79465656_79465777_79465901_79465963_79467098_79467170_79473282
ES_00004921	chr10	-	853	3	FSM	ENSMUSG00000020312.13	ENSMUST00000166450.2	969	3	116	0	116	0	multi-exon	FALSE	canonical	3	24	junction_1	1.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCCCAACTTCTACCCC	NA	False	NA	NA	False	NA	NA	NA	79458798	79455924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79455934_79456887_79457022_79458088
ES_00004922	chr10	-	3947	19	FSM	ENSMUSG00000020329.13	ENSMUST00000159082.8	3935	19	0	-12	0	7	multi-exon	FALSE	canonical	3	126	junction_14	18.0387100904803	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGGCGCCAATGCTGTCG	4715	False	NA	7	True	NA	NA	NA	79582407	79571949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
ES_00004923	chr10	-	3776	21	FSM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	0	-21	0	14	multi-exon	TRUE	canonical	3	126	junction_16	17.3118456555042	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATGCTGTCGTTTATTG	4709	False	NA	14	True	NA	NA	NA	79582413	79571942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
ES_00004925	chr10	-	1621	9	FSM	ENSMUSG00000035890.10	ENSMUST00000047203.9	1639	9	0	18	0	9	multi-exon	FALSE	canonical	3	909	junction_4	92.4302946819927	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGCGTCTTCCTTCAG	NA	False	NA	2	True	AATACA	-25	NA	79602786	79594366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
ES_00004927	chr10	-	3194	15	FSM	ENSMUSG00000013833.16	ENSMUST00000105378.9	3197	15	0	3	0	-3	multi-exon	TRUE	canonical	3	23	junction_14	45.000680266967	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCTTTGGCTGTCACCGT	1814	False	NA	-4	True	AATAAA	-15	NA	79744755	79730544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743488_79744651
ES_00004928	chr10	-	2950	15	FSM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_9	18.1911617921159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAGA	1837	False	NA	NA	False	NA	NA	NA	79744732	79730768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743491_79744651
ES_00004929	chr10	-	1828	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	76	-6	-2	6	multi-exon	FALSE	canonical	3	145	junction_7	14.1608831731957	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTGTTTGTCTTTAGG	9758	False	NA	-2	True	AATAAA	-21	NA	79752764	79745879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
ES_00004930	chr10	-	2203	11	FSM	ENSMUSG00000013858.15	ENSMUST00000052885.14	2225	11	22	0	22	0	multi-exon	FALSE	canonical	3	84	junction_4	19.7891384350103	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGTAGTTCCTCAGCTC	NA	False	NA	-17	True	AATAAA	-18	NA	79820142	79812951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814310_79814381_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
ES_00004931	chr10	-	2231	10	FSM	ENSMUSG00000013858.15	ENSMUST00000124536.2	1767	10	-224	-240	66	0	multi-exon	FALSE	canonical	3	99	junction_9	17.0257611638915	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGTAGTTCCTCAGCTC	NA	False	NA	-17	True	AATAAA	-18	NA	79820098	79812951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
ES_00004932	chr10	-	1092	8	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	0	53767	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1002.78752302097	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGTAGTAGAGATAGAGA	5600	False	NA	NA	False	NA	NA	NA	79875544	79818015	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79818045_79871782_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ES_00004933	chr10	-	1240	5	FSM	ENSMUSG00000004667.19	ENSMUST00000131743.8	1238	5	0	-2	0	0	multi-exon	FALSE	canonical	3	2815	junction_1	73.6562964043129	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5660	False	NA	-19	True	ATTAAA	-19	NA	79875484	79871782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79872136_79872360_79872808_79873021_79873219_79874272_79874448_79875416
ES_00004934	chr10	-	2403	4	FSM	ENSMUSG00000004667.19	ENSMUST00000143438.8	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	187.276978474843	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5600	False	NA	-19	True	ATTAAA	-19	NA	79875544	79871782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79872136_79872360_79872433_79872597_79874448_79875416
ES_00004937	chr10	-	4378	29	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	3	19	junction_28	32.0305179732182	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCTGTGGCCTACAG	5688	False	NA	-1	True	AATATA	-16	NA	79911240	79892830	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
ES_00004938	chr10	-	4619	32	ISM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	1727	-16	0	16	3prime_fragment	FALSE	canonical	3	16	junction_5	30.9623987325878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTGGAAGGGGGGATCTA	NA	False	NA	20	True	AATATA	-37	NA	79938477	79892809	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894567_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ES_00004939	chr10	-	4682	32	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-32	-5	combination_of_known_junctions	FALSE	canonical	3	132	junction_8	18.0258226152743	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCTGTGGCCTACAG	NA	False	NA	-1	True	AATATA	-16	NA	79938564	79892830	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ES_00004940	chr10	-	1090	5	NNC	ENSMUSG00000035673.11	novel	3772	6	NA	NA	-25	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	67.5772705870842	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTGTCTGCCATTCAGT	NA	False	NA	NA	False	AATAGA	-9	NA	79938557	79916244	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79916859_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ES_00004941	chr10	-	2941	9	FSM	ENSMUSG00000035640.19	ENSMUST00000170219.9	2941	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	10.5682306939241	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAACCAACCC	NA	False	NA	94	True	NA	NA	NA	79973221	79966284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972707_79972773_79972876_79973017_79973121
ES_00004942	chr10	-	3175	11	FSM	ENSMUSG00000035640.19	ENSMUST00000147778.9	3175	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	10.1788997440784	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGCTCTGGGTTTTC	9074	False	NA	-6	True	CATAAA	-13	NA	79975199	79966384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972523_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ES_00004944	chr10	-	988	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9249	False	NA	NA	False	AATAAA	-18	NA	80096846	80093984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
ES_00004945	chr10	-	1649	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGGCTCGCTTTATTA	8717	False	NA	NA	False	GATAAA	-19	NA	80156371	80154087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80155382_80156016
ES_00004946	chr10	-	3491	12	FSM	ENSMUSG00000043822.19	ENSMUST00000124789.8	3520	12	0	29	0	-1	multi-exon	TRUE	canonical	2	3	junction_2	5.22865594347215	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGCTGCACTGCAGAG	NA	False	NA	NA	False	NA	NA	NA	80184246	80175655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
ES_00004948	chr10	-	3266	2	FSM	ENSMUSG00000048696.12	ENSMUST00000105350.3	3266	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTGGCGTTCGCGTGGTG	NA	False	NA	0	True	AATAAA	-20	NA	80223493	80216188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80218456_80222494
ES_00004950	chr10	-	1514	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235256	80228372	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ES_00004951	chr10	-	1566	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ES_00004952	chr10	-	1662	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ES_00004953	chr10	-	1222	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105348.8	1222	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	422.225617676406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGAAAGCAGATGAGC	NA	False	NA	NA	False	NA	NA	NA	80235256	80228672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231120_80231269_80231430_80235051
ES_00004955	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242664	80238830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80238990_80239969_80240121_80242529
ES_00004956	chr10	-	605	3	FSM	ENSMUSG00000020163.13	ENSMUST00000141683.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	2065	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGGCTCCTTCCTCAT	NA	False	NA	-2	True	ATTAAA	-20	NA	80242629	80238831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80238990_80239969_80240121_80242333
ES_00004957	chr10	-	2950	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105344.8	2946	19	0	-4	0	4	multi-exon	TRUE	canonical	3	359	junction_12	261.05737035618	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCTGGCACAAGATCT	NA	False	NA	4	True	NA	NA	NA	80269471	80245343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004958	chr10	-	2954	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105345.10	2950	19	0	-4	0	4	multi-exon	FALSE	canonical	3	747	junction_5	176.383700711101	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCTGGCACAAGATCT	NA	False	NA	4	True	NA	NA	NA	80269481	80245343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004959	chr10	-	2928	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105342.8	2928	19	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_12	316.935193165206	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACCCAGTGTTGATCT	NA	False	NA	-33	True	ATTAAA	-10	NA	80269477	80245380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004960	chr10	-	2920	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105343.8	2920	19	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_12	245.119472004073	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACCCAGTGTTGATCT	NA	False	NA	-33	True	ATTAAA	-10	NA	80269481	80245380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004961	chr10	-	2839	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105346.10	2839	19	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_2	257.439271275891	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTTTCTAGAATTTAT	NA	False	NA	-14	True	TATAAA	-14	NA	80269455	80245441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004962	chr10	-	2847	19	FSM	ENSMUSG00000020167.15	ENSMUST00000020379.13	2829	19	0	-18	0	0	multi-exon	FALSE	canonical	3	581	junction_5	199.277305392371	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTTTCTAGAATTTAT	NA	False	NA	-14	True	TATAAA	-14	NA	80269469	80245441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004963	chr10	-	2552	18	NIC	ENSMUSG00000020167.15	novel	2946	19	NA	NA	47	2	combination_of_known_splicesites	FALSE	canonical	3	76	junction_1	351.55438331653	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATGTCTGTTTCTGTTTC	NA	False	NA	-24	True	TATAAA	-4	NA	80269408	80245451	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_80246109_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ES_00004965	chr10	-	5260	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	0	-10	0	7	multi-exon	FALSE	canonical	3	315	junction_13	35.2049393566022	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGTCTGTCCTGGGAGCT	9421	False	NA	NA	False	AATAAA	-24	NA	80397394	80376748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
ES_00004972	chr10	-	3066	10	NNC	ENSMUSG00000003344.15	novel	2449	9	NA	NA	0	29450	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	155.933746614815	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCACAACCATCTGTAATT	NA	False	NA	NA	False	NA	NA	NA	80492328	80449000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80449624_80478456_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ES_00004973	chr10	-	3083	10	NNC	ENSMUSG00000003344.15	novel	2449	9	NA	NA	0	29450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.706064959102	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCACAACCATCTGTAATT	NA	False	NA	NA	False	NA	NA	NA	80492328	80449000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80449623_80478456_80479526_80479659_80479807_80480095_80480184_80480436_80480648_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ES_00004974	chr10	-	4022	15	NNC	ENSMUSG00000020190.14	novel	3439	14	NA	NA	0	52160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135.144367252209	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCACAACCATCTGTAATT	9981	False	NA	NA	False	NA	NA	NA	80512127	80449000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80449627_80501161_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511956
ES_00004975	chr10	-	3020	9	FSM	ENSMUSG00000003344.15	ENSMUST00000003434.14	3026	9	0	6	0	0	multi-exon	FALSE	canonical	3	325	junction_4	58.371118714652	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGAGTGCTATGTTGTC	NA	False	NA	-5	True	AATAAA	-20	NA	80492905	80478456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ES_00004977	chr10	-	3535	14	FSM	ENSMUSG00000020190.14	ENSMUST00000200082.5	3439	14	0	-96	0	96	multi-exon	FALSE	canonical	3	105	junction_13	111.384031022692	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGACATCACCAGAGCGG	9981	False	NA	50	True	NA	NA	NA	80512127	80501064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511914
ES_00004979	chr10	-	2889	14	NNC	ENSMUSG00000020190.14	novel	3439	14	NA	NA	39	-565	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_12	162.294603919965	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCCCTGTTCTTGAAG	8190	False	NA	NA	False	AAGAAA	-10	NA	80512088	80501730	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507909_80511657_80511775_80511914
ES_00004981	chr10	-	2683	4	FSM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	0	-1	0	1	multi-exon	FALSE	canonical	3	56	junction_3	9.97775303139718	2221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGGGCTGCTCCTTGTTGT	9117	False	NA	0	True	AATAAA	-17	NA	80537689	80521085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80523008_80525685_80525889_80526902_80527402_80537630
ES_00004982	chr10	-	4808	31	FSM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	0	-3	0	3	multi-exon	FALSE	canonical	1	82	junction_14	55.4957555934586	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTGTGTCCCCATGGT	9208	False	NA	1	True	ATTAAA	-17	NA	80578098	80542786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
ES_00004983	chr10	-	786	7	FSM	ENSMUSG00000020198.9	ENSMUST00000218610.2	786	7	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_5	161.669158056404	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGTCTTTCCAGAATCT	2095	False	NA	NA	False	NA	NA	NA	80546624	80544635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80545922_80546127_80546253_80546302_80546522
ES_00004984	chr10	-	913	2	FSM	ENSMUSG00000020198.9	ENSMUST00000219253.2	668	2	-245	0	-245	0	multi-exon	FALSE	canonical	3	294	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGCTGGAGGGCACCCG	5303	False	NA	NA	False	NA	NA	NA	80556239	80555048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80555223_80555500
ES_00004986	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634460	80631932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ES_00004987	chr10	-	1264	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	0	-3	0	0	multi-exon	FALSE	canonical	3	943	junction_2	144.890260197157	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634394	80631932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633812_80633914
ES_00004988	chr10	-	734	4	FSM	ENSMUSG00000035278.10	ENSMUST00000220093.2	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	518.336441576961	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTAATAAAGGTACCTC	NA	False	NA	-31	True	NA	NA	NA	80633539	80631960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633356
ES_00004989	chr10	-	1098	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	-266	-299	0	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTAATAAAGGTACCTC	NA	False	NA	-31	True	NA	NA	NA	80634394	80631960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
ES_00004991	chr10	-	3439	2	FSM	ENSMUSG00000051067.9	ENSMUST00000053986.9	3439	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2035	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGACGTTTAGATATTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	80679873	80668634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80671976_80679775
ES_00004992	chr10	-	575	4	FSM	ENSMUSG00000035215.10	ENSMUST00000220406.2	550	4	-25	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	2083.35727986237	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691002	80688666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690858
ES_00004995	chr10	-	479	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	-11	0	7	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACTTTGATCTTTGGAG	NA	False	NA	-2	True	AATAAA	-36	NA	80691043	80688647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
ES_00004996	chr10	-	1136	3	FSM	ENSMUSG00000035215.10	ENSMUST00000220225.2	1129	3	0	-7	0	7	multi-exon	FALSE	canonical	3	2872	junction_2	840	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACTTTGATCTTTGGAG	NA	False	NA	-2	True	AATAAA	-36	NA	80691043	80688647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80689664_80690451_80690543_80691014
ES_00004997	chr10	-	646	3	FSM	ENSMUSG00000035215.10	ENSMUST00000217781.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	4365	junction_1	93.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATCTTCCTTCTATGGG	NA	False	NA	NA	False	NA	NA	NA	80690857	80688766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80688935_80689591_80689664_80690451
ES_00005001	chr10	-	1230	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	0	-5	0	5	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATCGGACTCCCATGTTT	5448	False	NA	NA	False	AATATA	-18	NA	80736803	80735278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80736094_80736315_80736385_80736457
ES_00005002	chr10	-	542	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5632	False	NA	-7	True	AATAAA	-25	NA	80736619	80735737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80736094_80736315_80736385_80736502
ES_00005005	chr10	-	3531	12	FSM	ENSMUSG00000062075.14	ENSMUST00000057623.14	3531	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	3111	False	NA	NA	False	NA	NA	NA	80754079	80737036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ES_00005006	chr10	-	2878	2	FSM	ENSMUSG00000043670.5	ENSMUST00000055125.5	2953	2	8	67	8	-67	multi-exon	FALSE	canonical	1	1	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGGGTCTGTGTACCG	NA	False	NA	NA	False	NA	NA	NA	80861235	80855489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80858305_80861172
ES_00005007	chr10	-	3690	4	FSM	ENSMUSG00000046822.15	ENSMUST00000117276.11	3796	4	104	2	-14	0	multi-exon	FALSE	canonical	3	49	junction_3	7.58653778449403	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTATTTGTTTTTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	80873156	80864373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80867535_80869445_80869768_80870751_80870840_80873037
ES_00005008	chr10	-	3680	4	FSM	ENSMUSG00000046822.15	ENSMUST00000059551.7	3680	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.0377492776186	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTATTTGTTTTTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	80873142	80864373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80867535_80869445_80869768_80870751_80870844_80873037
ES_00005009	chr10	-	1972	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	0	-8	0	6	multi-exon	TRUE	canonical	3	688	junction_11	105.465203223192	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCCTGTGTCAGCCT	4772	False	NA	-5	True	AATAAA	-23	NA	80896012	80879902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
ES_00005014	chr10	-	667	4	FSM	ENSMUSG00000035041.9	ENSMUST00000127374.2	744	4	-65	142	-65	-142	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACTTGGTAGGCATCCCC	NA	False	NA	NA	False	NA	NA	NA	80928474	80925918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80926018_80926971_80927270_80927631_80927764_80928336
ES_00005015	chr10	-	2560	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	9	2	9	-2	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGTGGTTTCTCTGT	NA	False	NA	0	True	AATAAA	-35	NA	81003748	80989101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ES_00005016	chr10	-	771	7	FSM	ENSMUSG00000004934.15	ENSMUST00000147436.8	771	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_5	31.26766167571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCATTCTAAGCACGCAG	7509	False	NA	NA	False	NA	NA	NA	80993845	80991335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766
ES_00005018	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81100832_81101484_81101642_81102606
ES_00005019	chr10	-	1273	2	FSM	ENSMUSG00000034932.5	ENSMUST00000145452.2	530	2	-26	-717	-16	0	multi-exon	FALSE	canonical	3	981	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3078	False	NA	0	True	AATAAA	-29	NA	81102784	81100546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81101642_81102606
ES_00005021	chr10	-	2922	21	FSM	ENSMUSG00000034917.9	ENSMUST00000219479.2	2901	21	0	-21	0	0	multi-exon	FALSE	canonical	3	20	junction_20	30.1312130522487	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	6983	False	NA	8	True	AATAAA	-27	NA	81127415	81109040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81127297
ES_00005022	chr10	-	2973	21	NIC	ENSMUSG00000034917.9	novel	3024	21	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_20	33.8096140173176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	7852	False	NA	8	True	AATAAA	-27	NA	81121603	81109040	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81121434
ES_00005026	chr10	-	2506	7	FSM	ENSMUSG00000020232.18	ENSMUST00000132313.2	2501	7	0	-5	0	2	multi-exon	FALSE	canonical	3	543	junction_2	31.1202863454407	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATATTTGTGGCTTTGG	NA	False	NA	-6	True	AATAAA	-22	NA	81186203	81181879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719
ES_00005027	chr10	-	1626	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	-5	0	2	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATATTTGTGGCTTTGG	NA	False	NA	-6	True	AATAAA	-22	NA	81186258	81181879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ES_00005028	chr10	-	1545	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	-5	0	2	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATATTTGTGGCTTTGG	NA	False	NA	-6	True	AATAAA	-22	NA	81186260	81181879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
ES_00005029	chr10	-	1465	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	0	-2	0	2	multi-exon	FALSE	canonical	3	169	junction_9	133.860992944542	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATATTTGTGGCTTTGG	NA	False	NA	-6	True	AATAAA	-22	NA	81186314	81181879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
ES_00005033	chr10	-	3058	14	FSM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	0	-1	0	1	multi-exon	FALSE	canonical	3	644	junction_9	52.0083061185946	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGTTGTTGCTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	81214350	81202054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
ES_00005036	chr10	-	6238	9	FSM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	0	-1	0	1	multi-exon	TRUE	canonical	2	12	junction_1	7.0611171212493	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTTCTTCCTTTCTGT	3898	False	NA	NA	False	NA	NA	NA	81263021	81232018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
ES_00005037	chr10	-	6261	10	NNC	ENSMUSG00000055053.19	novel	3348	10	NA	NA	-329	1	intron_retention	FALSE	canonical	1	1	junction_9	9.94180598145224	2177	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTTCTTCCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	81267168	81232018	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81267110
ES_00005038	chr10	-	1655	10	FSM	ENSMUSG00000055053.19	ENSMUST00000117966.2	1655	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	6.76775214792936	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGGACTCCCAGCTGGAT	80	False	NA	NA	False	NA	NA	NA	81266839	81236786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81266619
ES_00005039	chr10	-	2939	14	FSM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	0	179	0	29	multi-exon	FALSE	canonical	3	251	junction_4	53.9264236863306	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTGCTGCTGTCCTTG	NA	False	NA	-1	True	NA	NA	NA	81332226	81322261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
ES_00005040	chr10	-	2870	14	FSM	ENSMUSG00000020238.15	ENSMUST00000118498.8	2841	14	0	-29	0	29	multi-exon	TRUE	canonical	3	153	junction_4	76.7224306246012	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTGCTGCTGTCCTTG	NA	False	NA	-1	True	NA	NA	NA	81332160	81322261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324190_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
ES_00005045	chr10	-	1851	7	FSM	ENSMUSG00000034792.9	ENSMUST00000043709.8	1962	7	118	-7	118	0	multi-exon	FALSE	canonical	0	0	junction_4	27.6083723211315	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGAGGAAGAGAGAAA	5897	False	NA	NA	False	AATAAA	-25	NA	81359941	81338139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81338940_81343761_81343916_81345119_81345250_81347830_81347960_81348244_81348400_81350070_81350256_81359643
ES_00005046	chr10	-	3414	7	FSM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_6	26.2339898266013	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTTGTGATTATTAGT	4223	False	NA	0	True	AATAAA	-19	NA	81381024	81364557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
ES_00005047	chr10	-	3174	3	FSM	ENSMUSG00000034781.6	ENSMUST00000146984.2	1547	3	-64	-1563	-64	0	multi-exon	FALSE	canonical	3	379	junction_1	9	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTTGTGATTATTAGT	NA	False	NA	0	True	AATAAA	-19	NA	81367913	81364557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81366820_81366925_81367080_81367155
ES_00005048	chr10	-	1794	11	NIC	ENSMUSG00000034758.13	novel	1855	11	NA	NA	3	1	combination_of_known_junctions	TRUE	canonical	3	25	junction_10	15.7445228571716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGTCCTTTACCCAGG	NA	False	NA	-13	True	NA	NA	NA	81433198	81426736	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81433129
ES_00005050	chr10	-	1962	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	0	-1	0	1	multi-exon	FALSE	canonical	2	14	junction_8	19.8357158000858	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGTCCTTTACCCAGG	NA	False	NA	-13	True	NA	NA	NA	81436709	81426736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ES_00005051	chr10	-	2023	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	-6	-2	-6	1	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGTCCTTTACCCAGG	NA	False	NA	-13	True	NA	NA	NA	81436740	81426736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ES_00005058	chr10	-	1855	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	36	0	36	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9694	False	NA	-11	True	AATAAA	-25	NA	81463595	81457620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ES_00005059	chr10	-	1327	9	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	72.0017360901805	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTGTTACATTTATG	9891	False	NA	-13	True	AATAAA	-23	NA	81463398	81457622	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ES_00005063	chr10	-	625	4	FSM	ENSMUSG00000094622.3	ENSMUST00000219864.2	625	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	2.62466929133727	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTACGGGTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	81606995	81582040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81582410_81582949_81583011_81583210_81583338_81606927
ES_00005064	chr10	-	588	1	FSM	ENSMUSG00000112740.2	ENSMUST00000217801.2	465	1	-80	-43	-80	43	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCACCATAAAAAAAAAAGAA	NA	False	NA	NA	False	AATATA	-11	NA	81654854	81654266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81654300_81654900
ES_00005065	chr10	-	514	1	FSM	ENSMUSG00000112697.2	ENSMUST00000218997.2	463	1	-8	-43	-8	43	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCACCATAAAAAAAAAAGA	5068	False	NA	NA	False	AATATA	-10	NA	81689120	81688606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81688600_81689100
ES_00005066	chr10	-	591	1	FSM	ENSMUSG00000112051.2	ENSMUST00000219220.2	465	1	-80	-46	-80	46	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCATAAAAAAAAAGAACATA	NA	False	NA	NA	False	AATATA	-14	NA	81822316	81821725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81821700_81822300
ES_00005067	chr10	-	295	2	Intergenic	novelGene_366	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	171	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACATACATAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	81917085	81879302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_81879570_81917057
ES_00005068	chr10	-	386	2	Antisense	novelGene_ENSMUSG00000061371.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTGATACACCTACTCC	NA	False	NA	NA	False	NA	NA	NA	81901613	81900209	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_81900444_81901461
ES_00005070	chr10	-	2210	5	NNC	ENSMUSG00000062931.16	novel	2035	4	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	54.3438128953058	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077102	82060683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_82062428_82063364_82063426_82063632_82063760_82072440_82072621_82077004
ES_00005071	chr10	-	2035	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077107	82060683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
ES_00005072	chr10	-	1113	3	Antisense	novelGene_ENSMUSG00000073427.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	92	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCTTTTATGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	82215033	82213248	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_82213684_82213935_82214272_82214691
ES_00005074	chr10	-	716	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459030	82455684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_82456052_82458541_82458659_82458798
ES_00005075	chr10	-	469	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	174.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTTCATAACCATCTATG	NA	False	NA	84	True	NA	NA	NA	82459062	82455775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_82456052_82458541_82458659_82458986
ES_00005076	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	131	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82459024	82455859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_82456052_82458541_82458659_82458927
ES_00005078	chr10	-	2554	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82599978	82584534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ES_00005082	chr10	-	649	2	Intergenic	novelGene_369	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	7	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGAGAGTGTGTGTGTG	7459	False	NA	87	True	NA	NA	NA	82756686	82753642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_82754279_82756673
ES_00005083	chr10	-	6027	23	FSM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	8.2773463628096	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTCTCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83370004	83323313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_83326499_83328338_83328539_83329292_83329399_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
ES_00005090	chr10	-	1803	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	6	-242	6	242	multi-exon	FALSE	canonical	3	41	junction_2	4.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAGAAGGACTAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	84963885	84955054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84956679_84962231_84962351_84963825
ES_00005091	chr10	-	3032	13	FSM	ENSMUSG00000020038.11	ENSMUST00000020227.11	3026	13	0	-6	0	6	multi-exon	FALSE	canonical	3	194	junction_12	27.3651999200932	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGTGTTCATTTCTCA	NA	False	NA	1	True	ATTAAA	-25	NA	85020928	84967557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84968172_84968914_84969023_84969105_84969178_84978879_84979033_84979502_84979706_84980017_84980170_84982207_84982520_84982599_84982741_84983770_84983860_84984477_84984663_84987076_84987220_84992949_84993059_85020177
ES_00005093	chr10	-	2026	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	0	-17	0	17	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCAGTTTTGTCTGCTCA	NA	False	NA	5	True	ATTAAA	-34	NA	85793687	85774483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ES_00005095	chr10	-	1889	1	FSM	ENSMUSG00000097692.3	ENSMUST00000190739.2	1889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTGTAGATTGGGAAC	NA	False	NA	NA	False	NA	NA	NA	85858193	85856304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_85856300_85858200
ES_00005096	chr10	-	2825	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541373	86526703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ES_00005098	chr10	-	3594	11	FSM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.3666279968544	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982803	87927293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357
ES_00005099	chr10	-	844	6	FSM	ENSMUSG00000035365.16	ENSMUST00000168163.8	825	6	1	-20	1	0	multi-exon	FALSE	canonical	3	12	junction_5	24.6138172577924	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCACCAACTTGAAGCAT	NA	False	NA	NA	False	NA	NA	NA	87982794	87962071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357_87982511_87982713
ES_00005103	chr10	-	1469	9	FSM	ENSMUSG00000060002.15	ENSMUST00000139109.8	1447	9	0	-22	0	0	multi-exon	FALSE	canonical	0	0	junction_1	64.1847918123912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTCATATTTCTGCAAT	4205	False	NA	-7	True	AATAAA	-18	NA	88339751	88308678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_88308847_88311194_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
ES_00005104	chr10	-	3898	8	FSM	ENSMUSG00000060002.15	ENSMUST00000020253.15	3898	8	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_3	42.2794396889098	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTCATATTTCTGCAAT	4124	False	NA	-7	True	AATAAA	-18	NA	88339832	88308678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
ES_00005105	chr10	-	852	4	FSM	ENSMUSG00000060002.15	ENSMUST00000073783.6	852	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	64.2201076160903	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTCTTCCATATCTT	4169	False	NA	NA	False	NA	NA	NA	88339787	88322903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_88323125_88324243_88324386_88325442_88325591_88339446
ES_00005107	chr10	-	1740	6	FSM	ENSMUSG00000004359.17	ENSMUST00000004473.15	1763	6	22	1	22	-1	multi-exon	FALSE	canonical	3	18	junction_5	182.911563330479	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	88518863	88510634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88518836
ES_00005108	chr10	-	1695	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520904	88510633	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
ES_00005112	chr10	-	6749	11	FSM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	0	-1	0	1	multi-exon	FALSE	canonical	3	18	junction_8	13.3450365304858	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCCTAACTTTATAAG	NA	False	NA	50	True	AATAAA	-19	NA	89279829	89244683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151_89270224_89272364_89272472_89279716
ES_00005115	chr10	-	4821	18	FSM	ENSMUSG00000069539.12	ENSMUST00000174252.8	4817	18	-3	-1	-3	1	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGGAACAGTTCAGT	NA	False	NA	1	True	AATAAA	-18	NA	89522150	89474581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89476979_89477852_89477973_89481323_89481420_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
ES_00005116	chr10	-	4793	18	FSM	ENSMUSG00000069539.12	ENSMUST00000092227.12	3566	18	5	-1232	0	1	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGGAACAGTTCAGT	NA	False	NA	1	True	AATAAA	-18	NA	89522125	89474581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89476979_89477852_89477973_89481323_89481417_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
ES_00005119	chr10	-	6433	27	FSM	ENSMUSG00000019979.13	ENSMUST00000159110.8	6433	27	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_15	13.5705476423617	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTTTCGGGATCCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	90918524	90825172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
ES_00005120	chr10	-	6584	27	FSM	ENSMUSG00000019979.13	ENSMUST00000020157.13	6577	27	0	-7	0	0	multi-exon	FALSE	canonical	3	23	junction_26	18.4606169641815	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTTTCGGGATCCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	90918632	90825172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942_90903127_90913395_90913594_90915308_90915499_90915748_90915994_90918044
ES_00005123	chr10	-	1615	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	0	-3	0	3	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTATTTTTTTGACAA	NA	False	NA	3	True	ATTAAA	-21	NA	90959921	90952432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ES_00005124	chr10	-	1562	8	FSM	ENSMUSG00000061904.13	ENSMUST00000170810.8	1341	8	0	-221	0	3	multi-exon	FALSE	canonical	1	85	junction_6	1787.71823557179	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTATTTTTTTGACAA	NA	False	NA	3	True	ATTAAA	-21	NA	90959865	90952432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90958068_90958194_90959419_90959569_90959777
ES_00005125	chr10	-	1483	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATCTATTCCTGATGT	NA	False	NA	-21	True	NA	NA	NA	90959817	90952669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
ES_00005128	chr10	-	246	1	FSM	ENSMUSG00000077167.3	ENSMUST00000103979.3	246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTGGATGGTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	90954398	90954152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90954200_90954400
ES_00005130	chr10	-	3533	9	FSM	ENSMUSG00000019961.18	ENSMUST00000072239.14	3533	9	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_4	77.1961786619001	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTGTTGAATACATG	NA	False	NA	-2	True	AATAAA	-15	NA	91007444	90983432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ES_00005131	chr10	-	1842	6	FSM	ENSMUSG00000019961.18	ENSMUST00000105293.11	1842	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	321.134862635622	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTCATTAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	91007414	90984766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90985621_90987570_90987660_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ES_00005132	chr10	-	1854	8	FSM	ENSMUSG00000019961.18	ENSMUST00000092219.14	1854	8	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	263.470092792177	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATTTATGACTTATT	NA	False	NA	-7	True	ATTAAA	-18	NA	91007430	90984977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ES_00005133	chr10	-	5277	5	FSM	ENSMUSG00000019961.18	ENSMUST00000213262.2	788	5	-4035	-454	-4035	0	multi-exon	FALSE	canonical	3	670	junction_4	84.0903531922658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACATCTTATTTCACTT	7785	False	NA	NA	False	NA	NA	NA	90993591	90985091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139
ES_00005134	chr10	-	4443	3	FSM	ENSMUSG00000019961.18	ENSMUST00000216501.2	4441	3	0	-2	0	0	multi-exon	FALSE	canonical	3	809	junction_2	36.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTGTGTGGTCTCCAG	NA	False	NA	-18	True	AATAAA	-16	NA	91007430	90996278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_91000064_91001804_91001932_91006899
ES_00005135	chr10	-	3772	4	FSM	ENSMUSG00000019961.18	ENSMUST00000020123.7	3772	4	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	318.417266421838	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTGTGTGGTCTCCAG	NA	False	NA	-18	True	AATAAA	-16	NA	91007440	90996278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90999224_90999904_91000064_91001804_91001932_91006899
ES_00005136	chr10	-	913	2	FSM	ENSMUSG00000110847.2	ENSMUST00000215985.2	913	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGGACTTACGGTTGGAT	NA	False	NA	NA	False	AAGAAA	-27	NA	91095206	91088006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_91088091_91094377
ES_00005138	chr10	-	1866	11	FSM	ENSMUSG00000019988.8	ENSMUST00000214417.2	1866	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	20.9305996091846	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCTGTGCATTCTTCATT	NA	False	NA	NA	False	ATTAAA	-21	NA	92558225	92527375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
ES_00005140	chr10	-	4206	5	FSM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	0	6	0	-6	multi-exon	FALSE	canonical	3	43	junction_3	2.48746859276655	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGAGGGTGTTTGTTCCCT	NA	False	NA	NA	False	AATAAA	-27	NA	93146997	93083281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630_93120840_93146613
ES_00005141	chr10	-	853	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	12	-4	12	4	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCACTTGAAAGTTTT	NA	False	NA	NA	False	GATAAA	-40	NA	93425556	93418886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ES_00005142	chr10	-	4424	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	0	0	0	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGAGTGAAAGACCAGT	NA	False	NA	-14	True	AATAAA	-23	NA	93725676	93694350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ES_00005143	chr10	-	2952	3	FSM	ENSMUSG00000036112.16	ENSMUST00000181894.2	3034	3	82	0	13	0	multi-exon	FALSE	canonical	3	2086	junction_2	37	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAGCCAAAACCAACACT	NA	False	NA	NA	False	TATAAA	-17	NA	93699850	93695687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93697465_93698238_93698355_93698791
ES_00005144	chr10	-	1906	11	NIC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	0	10	combination_of_known_junctions	FALSE	canonical	3	309	junction_10	575.406508479006	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAATGTGTATGGTTGTA	NA	False	NA	-6	True	AATAAA	-26	NA	93725590	93696779	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722961_93725399
ES_00005145	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725637	93696790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
ES_00005146	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725646	93696790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
ES_00005152	chr10	-	4479	12	FSM	ENSMUSG00000036099.17	ENSMUST00000047711.13	4479	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	11.4039285676849	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAAAGAAAGA	3464	False	NA	NA	False	NA	NA	NA	93871610	93803961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829517_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
ES_00005154	chr10	-	5770	3	FSM	ENSMUSG00000097164.3	ENSMUST00000181906.3	6566	3	0	796	0	-796	multi-exon	FALSE	canonical	3	9	junction_2	6	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCACCACAAGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	94524438	94507682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_94512992_94514192_94514310_94524094
ES_00005155	chr10	-	7278	31	FSM	ENSMUSG00000074785.6	ENSMUST00000099337.5	7302	31	3	21	3	-21	multi-exon	TRUE	canonical	0	0	junction_5	2.01218510303821	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACATTTTGATGTAACAA	NA	False	NA	NA	False	TTTAAA	-17	NA	94780694	94626748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_94629153_94630277_94630353_94630447_94630589_94632231_94632380_94633845_94634010_94635132_94635241_94635335_94635368_94637322_94637378_94646526_94646631_94648984_94649163_94663032_94663180_94667204_94667404_94669149_94669275_94669509_94669549_94673363_94673468_94673779_94673882_94677326_94677430_94679584_94679771_94680043_94680248_94683376_94683477_94685683_94685864_94688450_94688591_94700578_94700675_94700792_94700896_94702772_94702861_94706836_94706982_94718379_94718495_94742326_94742428_94746397_94746533_94758491_94758633_94779378
ES_00005156	chr10	-	1620	2	FSM	ENSMUSG00000045867.11	ENSMUST00000220279.2	1613	2	0	-7	0	7	multi-exon	FALSE	canonical	3	86	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGTGTCCATTGTGTCCT	NA	False	NA	NA	False	AATAAA	-1	NA	95158827	95010600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95011841_95158447
ES_00005158	chr10	-	1115	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	28	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159427	95011126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95011841_95158447_95158752_95159330
ES_00005159	chr10	-	989	3	FSM	ENSMUSG00000045867.11	ENSMUST00000220446.2	717	3	-20	-252	-20	252	multi-exon	FALSE	canonical	2	22	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATATTGAATCCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	95159569	95157357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95157804_95158447_95158752_95159330
ES_00005160	chr10	-	3285	3	FSM	ENSMUSG00000020027.19	ENSMUST00000130784.8	3285	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	8	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCCAGTGATCTGCAT	3878	False	NA	NA	False	TTTAAA	-6	NA	95228829	95223528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95224258_95224751_95224905_95226426
ES_00005161	chr10	-	1562	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGCCAGTGATCTGCA	NA	False	NA	NA	False	TTTAAA	-5	NA	95252718	95223529	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
ES_00005162	chr10	-	2179	3	FSM	ENSMUSG00000020027.19	ENSMUST00000172070.8	2153	3	0	-26	0	26	multi-exon	FALSE	canonical	3	27	junction_2	233.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGCTAATAAAAGGTCGCC	NA	False	NA	28	True	NA	NA	NA	95251346	95247325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95248973_95250692_95251054_95251175
ES_00005163	chr10	-	2222	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGTTGTAGGTGTA	NA	False	NA	2	True	AATAAA	-32	NA	95252719	95247351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95248973_95250692_95251054_95252479
ES_00005164	chr10	-	2153	2	NIC	ENSMUSG00000112261.2	novel	660	3	NA	NA	9	1614	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCATTAGAAGCACTGGG	1562	False	NA	NA	False	NA	NA	NA	95297077	95279563	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_95281620_95296980
ES_00005165	chr10	-	2170	2	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	7783	1614	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCATTAGAAGCACTGGG	9336	False	NA	NA	False	NA	NA	NA	95289303	95279563	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_95281620_95289189
ES_00005166	chr10	-	1184	3	FSM	ENSMUSG00000112261.2	ENSMUST00000219379.2	660	3	37	-561	37	561	multi-exon	FALSE	canonical	3	19	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTCAGAAACCCTAAG	1590	False	NA	NA	False	AAGAAA	-10	NA	95297049	95280616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95281620_95296475_95296588_95296980
ES_00005168	chr10	-	667	6	FSM	ENSMUSG00000062981.6	ENSMUST00000075829.3	666	6	0	-1	0	0	multi-exon	FALSE	canonical	3	7	junction_5	1622.28826045188	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95337789	95316666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337751
ES_00005169	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	-11	True	AATAAA	-14	NA	95337802	95316669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ES_00005170	chr10	-	455	5	FSM	ENSMUSG00000062981.6	ENSMUST00000217777.2	455	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1680.921826707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAATAAAAATACCC	NA	False	NA	-37	True	NA	NA	NA	95337789	95316695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95316840_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ES_00005171	chr10	-	3277	4	FSM	ENSMUSG00000062981.6	ENSMUST00000218996.2	3277	4	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_3	616.352712873616	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAATAAGTACCTT	NA	False	NA	NA	False	ATTAAA	-41	NA	95337801	95326538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95329578_95332685_95332750_95336244_95336385_95337767
ES_00005172	chr10	-	3314	5	NNC	ENSMUSG00000020029.7	novel	3210	5	NA	NA	-79	22	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_2	214.72307747422	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAGCCTGTTTTCATCTT	NA	False	NA	1	True	AATAAA	-38	NA	95400087	95382846	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_95385353_95385637_95385726_95387310_95387356_95388347_95388459_95399523
ES_00005173	chr10	-	3232	5	FSM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	0	-22	0	22	multi-exon	FALSE	canonical	3	479	junction_2	92.7937902017156	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAGCCTGTTTTCATCTT	NA	False	NA	1	True	AATAAA	-38	NA	95400008	95382846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523
ES_00005177	chr10	-	381	1	FSM	ENSMUSG00000112245.2	ENSMUST00000218709.2	712	1	131	200	131	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACAAAGTAGAAATAGGG	NA	False	NA	NA	False	NA	NA	NA	100134383	100134002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100134000_100134400
ES_00005179	chr10	-	662	1	FSM	ENSMUSG00000112480.2	ENSMUST00000177847.3	889	1	-26	253	-26	-253	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAACTGCAGCAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	100208021	100207359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100207400_100208000
ES_00005180	chr10	-	5995	14	FSM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	0	-2	0	2	multi-exon	FALSE	canonical	3	57	junction_8	14.4496677957759	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTCTTGTGATGTTG	NA	False	NA	3	True	ATTAAA	-25	NA	100323212	100279761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100323023
ES_00005182	chr10	-	2434	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	126	4	-21	-4	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGTGTGAAATAAATCCA	NA	False	NA	65	True	AATAAA	-21	NA	100425131	100408130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ES_00005183	chr10	-	779	8	NNC	ENSMUSG00000036009.17	novel	2033	12	NA	NA	41088	-2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	41.1230110864504	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGATCAATGTTCTTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	105635984	105599051	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635916
ES_00005184	chr10	-	2031	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	2	0	-2	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGATCAATGTTCTTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	105677239	105599051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
ES_00005185	chr10	-	2145	13	FSM	ENSMUSG00000036009.17	ENSMUST00000176924.8	2145	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_12	43.9515990102244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105677241	105599115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105668965_105669142_105676936
ES_00005186	chr10	-	681	5	FSM	ENSMUSG00000036009.17	ENSMUST00000176040.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	36.2724068680312	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGGCTATCTAAGCTCC	NA	False	NA	NA	False	NA	NA	NA	105677232	105662433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_105662453_105665708_105665816_105668711_105668877_105671987_105672082_105676936
ES_00005190	chr10	-	4721	17	NIC	ENSMUSG00000035798.15	novel	3635	17	NA	NA	-38	61	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	8.47030659126339	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGGATTGAAGTCAGGG	NA	False	NA	60	True	AATAAA	-19	NA	110846039	110777579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
ES_00005193	chr10	-	3594	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	-32	4	-26	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATATTTTGACTCATCTT	NA	False	NA	NA	False	AATAAA	-40	NA	112764932	112761338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_112761300_112764900
ES_00005194	chr10	-	3943	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	-191	0	191	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGCACGCGCGCACACA	NA	False	NA	NA	False	NA	NA	NA	115087372	115033585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ES_00005196	chr10	-	854	1	FSM	ENSMUSG00000020132.11	ENSMUST00000218831.2	843	1	0	-11	0	11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGGAGGGTTTTTTTGTT	NA	False	NA	3	True	AGTAAA	-21	NA	115151499	115150645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_115150600_115151500
ES_00005197	chr10	-	3013	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	3	-4	3	4	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTTTTGTTTTTATTTA	NA	False	NA	0	True	TATAAA	-23	NA	115198169	115176642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ES_00005198	chr10	-	3088	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	0	-4	0	4	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTTTTGTTTTTATTTA	NA	False	NA	0	True	TATAAA	-23	NA	115198152	115176642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
ES_00005201	chr10	-	2702	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	0	-9	0	9	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATTTGAAATTGTGACA	NA	False	NA	8	True	AATAAA	-32	NA	116417416	116321056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
ES_00005202	chr10	-	2814	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	-14	0	9	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATTTGAAATTGTGACA	NA	False	NA	8	True	AATAAA	-32	NA	116417405	116321056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ES_00005203	chr10	-	2843	17	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	3	100	junction_15	145.637593339598	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCAGTGTTGGCTTTGA	NA	False	NA	-7	True	AATAAA	-17	NA	116417391	116321071	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
ES_00005204	chr10	-	2120	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417416	116321691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
ES_00005207	chr10	-	1844	11	FSM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_7	35.031985384788	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCGTGTGTCTTTCTTA	NA	False	NA	-7	True	AATAAA	-10	NA	116786336	116742681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775387_116786164
ES_00005208	chr10	-	369	1	FSM	ENSMUSG00000111966.2	ENSMUST00000219792.2	443	1	134	-60	134	60	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAGAAATGTATGTATG	NA	False	NA	NA	False	NA	NA	NA	116808979	116808610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116808600_116809000
ES_00005210	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899719	116886905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ES_00005214	chr10	-	2126	6	FSM	ENSMUSG00000020170.5	ENSMUST00000219483.2	2145	6	0	19	0	-19	multi-exon	FALSE	canonical	1	1	junction_1	43.0330105848987	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTAGCCCTTCTTGGTA	NA	False	NA	NA	False	NA	NA	NA	116984400	116918728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116920505_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
ES_00005216	chr10	-	1397	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	13	-83	-4	82	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGCTTTGATCATATT	3384	False	NA	1	True	AATAAA	-24	NA	117060399	117051043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
ES_00005217	chr10	-	6526	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATACTTTGCAGTTTGTT	4474	False	NA	-12	True	AATAAA	-13	NA	117212875	117180577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00005218	chr10	-	2230	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	0	-3	0	0	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4515	False	NA	-9	True	AATAAA	-16	NA	117212834	117184943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00005219	chr10	-	2200	10	FSM	ENSMUSG00000055531.13	ENSMUST00000176686.8	2200	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	212.334001975806	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4471	False	NA	-9	True	AATAAA	-16	NA	117212878	117184943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117185407_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00005220	chr10	-	5151	10	NIC	ENSMUSG00000055531.13	novel	6526	10	NA	NA	7	-1329	combination_of_known_junctions	FALSE	canonical	3	201	junction_2	131.387279764636	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTCTTGAGATGTGGC	4523	False	NA	NA	False	AATAAA	-18	NA	117212826	117181906	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_117185373_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00005222	chr10	-	2258	11	NIC	ENSMUSG00000055531.13	novel	2227	11	NA	NA	14	1	combination_of_known_junctions	FALSE	canonical	3	61	junction_6	232.89227123286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGTAAAGCTGTTCAC	4488	False	NA	-11	True	AATAAA	-14	NA	117212861	117184945	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_117185373_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00005224	chr10	-	3097	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	0	2	0	-2	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTGTCAGTGATTT	NA	False	NA	-1	True	AATAAA	-39	NA	117546663	117524781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
ES_00005225	chr10	-	3132	12	FSM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	0	13	0	7	multi-exon	TRUE	canonical	3	51	junction_9	142.979973168527	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCTTACACATTTTTTT	NA	False	NA	-12	True	AATAAA	-28	NA	117546663	117524792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850_117545934_117546456
ES_00005226	chr10	-	3137	11	ISM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	471	14	5	6	3prime_fragment	FALSE	canonical	3	473	junction_6	30.8506077735918	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTCTTACACATTTTTT	NA	False	NA	-13	True	AATAAA	-27	NA	117546192	117524793	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
ES_00005228	chr10	-	3492	5	FSM	ENSMUSG00000060181.7	ENSMUST00000079041.7	3489	5	0	-3	0	3	multi-exon	FALSE	canonical	3	51	junction_4	6.41774882649672	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTGATAAGCAGTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	117582270	117569580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117572139_117576416_117576500_117576657_117576817_117580789_117580901_117581689
ES_00005229	chr10	-	3114	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	-4	True	AATAAA	-29	NA	117628610	117586525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
ES_00005233	chr10	-	2733	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	0	-9	0	9	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTACTCGTTATGTATTTAA	8605	False	NA	-1	True	ATTAAA	-21	NA	117681940	117649766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
ES_00005234	chr10	-	2418	1	FSM	ENSMUSG00000112216.2	ENSMUST00000219147.2	2409	1	1	-10	1	10	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATGCTCTGCCACAGGA	6388	False	NA	NA	False	NA	NA	NA	118076684	118074266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_118074300_118076700
ES_00005237	chr10	-	2317	1	FSM	ENSMUSG00000112419.2	ENSMUST00000179851.3	2409	1	-18	110	-18	-110	mono-exon	FALSE	NA	NA	NA	NA	NA	518	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGTGTCTAAAGGAAGAT	NA	False	NA	NA	False	AAGAAA	-29	NA	118168331	118166014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_118166000_118168300
ES_00005238	chr10	-	2317	1	FSM	ENSMUSG00000112027.2	ENSMUST00000219760.2	2409	1	-18	110	-18	-110	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGTGTCTAAAGGAAGAT	NA	False	NA	NA	False	AAGAAA	-29	NA	118173754	118171437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_118171400_118173800
ES_00005239	chr10	-	6187	3	FSM	ENSMUSG00000028630.10	ENSMUST00000004281.10	6129	3	-57	-1	-57	1	multi-exon	FALSE	canonical	3	29	junction_2	3.5	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCACCCCTTTTTCTAA	NA	False	NA	-6	True	AATAAA	-20	NA	118705111	118691506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_118697059_118704054_118704204_118704625
ES_00005243	chr10	-	2521	9	ISM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	23531	-38	-7750	38	3prime_fragment	FALSE	canonical	2	13	junction_2	3.9350190596743	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACGTGGGAAATTTAAAT	NA	False	NA	NA	False	NA	NA	NA	120014033	119977514	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972
ES_00005245	chr10	-	201	1	Intergenic	novelGene_413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGGAGGAGGAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	120446699	120446498	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_120446500_120446700
ES_00005246	chr10	-	4766	13	FSM	ENSMUSG00000048661.15	ENSMUST00000119944.8	4743	13	0	-23	0	23	multi-exon	FALSE	canonical	3	97	junction_12	16.3112095062125	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTAGGTGTTGTGTGTC	NA	False	NA	22	True	AAGAAA	-1	NA	120815237	120759294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299_120769446_120769534_120769615_120783108_120783177_120785201_120785269_120788122_120788161_120813688
ES_00005250	chr10	-	6006	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	0	-1	0	1	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGAGTGGGCCTTTTA	NA	False	NA	-7	True	AATAAA	-17	NA	121462237	121423283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
ES_00005251	chr10	-	5856	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	335.836865159261	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCATTGGAGTGGGCC	NA	False	NA	-12	True	AATAAA	-12	NA	121462237	121423288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462034
ES_00005252	chr10	-	6146	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-165	1	intron_retention	FALSE	canonical	0	0	junction_24	266.812928638942	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGAGTGGGCCTTTTA	NA	False	NA	-7	True	AATAAA	-17	NA	121462402	121423283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462034
ES_00005253	chr10	-	6144	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-149	-4	intron_retention	FALSE	canonical	3	89	junction_20	285.738003417855	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCATTGGAGTGGGCC	NA	False	NA	-12	True	AATAAA	-12	NA	121462386	121423288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451123_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
ES_00005254	chr10	-	5976	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2497	1	intron_retention	FALSE	canonical	3	239	junction_24	221.439792262417	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGAGTGGGCCTTTTA	9354	False	NA	-7	True	AATAAA	-17	NA	121464734	121423283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
ES_00005256	chr10	-	7712	22	FSM	ENSMUSG00000020121.16	ENSMUST00000020322.12	7711	22	0	-1	0	1	multi-exon	FALSE	canonical	3	19	junction_11	9.24570133614962	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCTGCTCGTGATT	NA	False	NA	NA	False	AATAAA	-17	NA	121883213	121616894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121664633_121664668_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209_121691432_121705621_121705751_121706232_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
ES_00005260	chr10	-	643	2	FSM	ENSMUSG00000034620.18	ENSMUST00000129359.2	651	2	0	8	0	-8	multi-exon	FALSE	canonical	3	307	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGACTCAACTTACCAAAC	NA	False	NA	NA	False	ATTAAA	-4	NA	121926610	121924557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121924955_121926364
ES_00005264	chr10	-	4668	22	NNC	ENSMUSG00000020124.11	novel	11525	22	NA	NA	0	27627	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	137.471844159115	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGACAAGGGTGTTAG	NA	False	NA	NA	False	NA	NA	NA	123032831	122913283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_122913315_122947642_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ES_00005265	chr10	-	11522	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	3	0	3	0	multi-exon	FALSE	canonical	3	236	junction_15	99.6636747895759	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTATATCTGTACATTTA	NA	False	NA	NA	False	AATAAA	-29	NA	123032897	122940910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ES_00005266	chr10	-	11396	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	0	-6730	0	0	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTATATCTGTACATTTA	NA	False	NA	NA	False	AATAAA	-29	NA	123032858	122940910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ES_00005267	chr10	-	2612	6	FSM	ENSMUSG00000020124.11	ENSMUST00000219010.2	2840	6	0	228	0	-228	multi-exon	FALSE	canonical	3	512	junction_5	37.9968419740378	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAAGGGCCTTGTAACA	NA	False	NA	NA	False	GATAAA	-19	NA	123032831	122997579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ES_00005269	chr10	-	946	6	FSM	ENSMUSG00000025436.13	ENSMUST00000026504.13	903	6	-51	8	-51	-8	multi-exon	FALSE	canonical	3	15	junction_1	67.2767418949521	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAACATCTGTTTGAC	NA	False	NA	-34	True	AATAAA	-11	NA	126737275	126704303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126704595_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ES_00005270	chr10	-	1043	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTATTTTTTGGCTCTT	NA	False	NA	0	True	AATAAA	-25	NA	126737217	126723117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ES_00005271	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	-3	True	AATAAA	-24	NA	126866709	126858200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ES_00005272	chr10	-	633	3	FSM	ENSMUSG00000040521.12	ENSMUST00000134917.2	695	3	0	62	0	-62	multi-exon	FALSE	canonical	3	855	junction_2	50	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTAGTGTGTCTGAAGA	NA	False	NA	NA	False	NA	NA	NA	126866672	126865152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126865552_126866331_126866506_126866612
ES_00005273	chr10	-	3038	4	FSM	ENSMUSG00000040502.6	ENSMUST00000040307.6	3037	4	0	-1	0	1	multi-exon	TRUE	canonical	3	10	junction_3	2.16024689946929	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGAGGGCTTTCTTACT	9919	False	NA	2	True	ATTAAA	-29	NA	126896053	126890878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126892781_126893300_126893494_126894088_126894245_126895266
ES_00005276	chr10	-	2480	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	0	-22	0	22	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATCAGGTCAGAGCAGCT	NA	False	NA	20	True	AATAAA	-38	NA	126956994	126931496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ES_00005277	chr10	-	2698	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	-47	-24	-47	22	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATCAGGTCAGAGCAGCT	NA	False	NA	20	True	AATAAA	-38	NA	126957047	126931496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ES_00005278	chr10	-	480	4	FSM	ENSMUSG00000040441.13	ENSMUST00000218658.2	492	4	12	0	12	0	multi-exon	FALSE	canonical	3	7	junction_2	2.82842712474619	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGCTAACCCCCCAAGCG	NA	False	NA	NA	False	NA	NA	NA	127012846	127010653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127010771_127010853_127010932_127012440_127012555_127012675
ES_00005279	chr10	-	1715	7	FSM	ENSMUSG00000019467.16	ENSMUST00000220295.2	1718	7	0	3	0	1	multi-exon	FALSE	canonical	3	22	junction_3	9.60902353693305	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGAGGTTGTTGTCTTG	9630	False	NA	-6	True	AATAAA	-13	NA	127021195	127018396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127018813_127019066_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951
ES_00005280	chr10	-	2477	15	FSM	ENSMUSG00000019467.16	ENSMUST00000218654.2	2475	15	0	-2	0	1	multi-exon	FALSE	canonical	3	18	junction_9	9.18628080901302	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTTGTTGTCTTGGGAG	6184	False	NA	-2	True	AATAAA	-17	NA	127024641	127018392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
ES_00005281	chr10	-	1962	6	FSM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	-18	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	37.9705148766777	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031596	127026246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ES_00005282	chr10	-	1994	5	FSM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	30.8332207205151	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGTCTCTGGAACTCCA	NA	False	NA	NA	False	NA	NA	NA	127031596	127026510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ES_00005286	chr10	-	3311	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	0	-4	0	4	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTTTTTGTTTTTTAA	NA	False	NA	0	True	AATAAA	-27	NA	127047424	127032931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
ES_00005288	chr10	-	5670	29	NNC	ENSMUSG00000074657.6	novel	6295	29	NA	NA	-118	1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	8.8746227283997	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTTGCTTCTTATTC	NA	False	NA	1	True	AATAAA	-17	NA	127099082	127061563	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_127063800_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ES_00005289	chr10	-	6161	29	FSM	ENSMUSG00000074657.6	ENSMUST00000099172.5	6295	29	135	-1	-118	1	multi-exon	FALSE	canonical	3	9	junction_1	8.75808664222118	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTTGCTTCTTATTC	NA	False	NA	1	True	AATAAA	-17	NA	127099082	127061563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127064291_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ES_00005290	chr10	-	3996	28	FSM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_13	6.98675996544999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGCTGTCCATCGGTCT	NA	False	NA	-7	True	ATTAAA	-18	NA	127098949	127064918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ES_00005291	chr10	-	4166	13	FSM	ENSMUSG00000025409.15	ENSMUST00000026476.13	4165	13	0	-1	0	1	multi-exon	FALSE	canonical	3	40	junction_5	25.9994658064781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGACTCTGTACTCATTT	NA	False	NA	-5	True	NA	NA	NA	127124759	127117823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119812_127119911_127120085_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ES_00005292	chr10	-	4288	13	FSM	ENSMUSG00000025409.15	ENSMUST00000119078.8	4287	13	0	-1	0	1	multi-exon	FALSE	canonical	3	53	junction_4	21.7579806558932	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGACTCTGTACTCATTT	NA	False	NA	-5	True	NA	NA	NA	127124887	127117823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120082_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ES_00005293	chr10	-	3870	13	NIC	ENSMUSG00000025409.15	novel	4287	13	NA	NA	21	321	intron_retention	FALSE	canonical	3	40	junction_5	24.2206294073645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGTTGCTCAAAGCACA	NA	False	NA	NA	False	NA	NA	NA	127124866	127118223	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120085_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ES_00005297	chr10	-	2963	22	FSM	ENSMUSG00000040354.15	ENSMUST00000171564.8	2962	22	0	-1	0	0	multi-exon	FALSE	canonical	3	61	junction_3	467.860135698655	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147655	127132089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127132310_127132409_127132503_127132585_127132610_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ES_00005298	chr10	-	3102	20	FSM	ENSMUSG00000040354.15	ENSMUST00000145275.8	3065	20	-184	147	-76	-24	multi-exon	FALSE	canonical	3	1393	junction_14	176.876657025606	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCTTGGATCTAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	127147731	127132241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127132310_127132409_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ES_00005302	chr10	-	220	2	Antisense	novelGene_ENSMUSG00000025404.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	155	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGCTCACAATTGGGGAA	8534	False	NA	NA	False	NA	NA	NA	127274040	127250442	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_127250610_127273987
ES_00005303	chr10	-	2238	12	FSM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_11	417.657853565126	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358255	127352991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ES_00005304	chr10	-	2305	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	0	-16	0	0	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358313	127352991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ES_00005308	chr10	-	8525	54	NNC	ENSMUSG00000040249.16	novel	14888	89	NA	NA	13171	669	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.1450791681452	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGGACCAGCTCCGTA	NA	False	NA	NA	False	NA	NA	NA	127404583	127373360	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_127373391_127374025_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280_127393431_127393942_127394057_127394404_127394525_127394699_127394829_127394965_127395092_127395836_127396030_127396323_127396529_127399472_127399663_127402325_127402704_127403016_127403142_127403230_127403383_127404221_127404349_127404457
ES_00005310	chr10	-	2552	15	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	42976	30753	3713	9415	internal_fragment	FALSE	canonical	3	10	junction_5	3.91816804340071	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTGGATCGCAGGTGAA	NA	False	NA	NA	False	NA	NA	NA	127414041	127404782	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_127404903_127405152_127405285_127407274_127407410_127407757_127407899_127408285_127408436_127408617_127408713_127408796_127408972_127409148_127409377_127409840_127409973_127410135_127410381_127410822_127410988_127411152_127411358_127412308_127412507_127412678_127412925_127413856
ES_00005311	chr10	-	2312	6	FSM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	0	-1	0	0	multi-exon	FALSE	canonical	3	27	junction_1	16.4851448279959	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCCCCTTCCCCTC	NA	False	NA	-1	True	AATAAA	-21	NA	127502501	127496786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
ES_00005312	chr10	-	2582	7	FSM	ENSMUSG00000025402.13	ENSMUST00000026469.9	2582	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	9.00771274458111	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCCCCTTCCCCTC	NA	False	NA	-1	True	AATAAA	-21	NA	127502579	127496786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127497649_127498599_127498792_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
ES_00005313	chr10	-	256	1	FSM	ENSMUSG00000090036.2	ENSMUST00000161584.2	342	1	67	19	67	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCAGCCACCTGAAAGAAA	NA	False	NA	NA	False	AAGAAA	-43	NA	127784362	127784106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127784100_127784400
ES_00005314	chr10	-	5313	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	-165	-3667	-165	2118	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTGCCTTGTCTATTC	NA	False	NA	28	True	AATAAA	-45	NA	128012513	127965308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
ES_00005317	chr10	-	1583	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	0	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047676	128045776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128047261_128047577
ES_00005319	chr10	-	1360	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGGTCTAAATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	128133953	128132007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
ES_00005320	chr10	-	1320	5	NIC	ENSMUSG00000039914.7	novel	1307	5	NA	NA	21	4	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	43.0058135604944	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCATTTTTTGAGGGGG	7266	False	NA	1	True	AATAAA	-16	NA	128204539	128198964	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204387
ES_00005322	chr10	-	1548	5	FSM	ENSMUSG00000039914.7	ENSMUST00000043211.7	1421	5	0	-127	0	127	multi-exon	FALSE	canonical	3	7	junction_3	37.9629753839185	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGTAGGCCAGGACTAC	6982	False	NA	NA	False	NA	NA	NA	128204823	128198841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204566
ES_00005323	chr10	-	1561	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220227.2	1434	5	0	-127	0	127	multi-exon	FALSE	canonical	3	69	junction_4	16.3248277173145	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGTAGGCCAGGACTAC	6939	False	NA	NA	False	NA	NA	NA	128204866	128198841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204566
ES_00005325	chr10	-	1127	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	3	0	3	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245740	128237263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
ES_00005328	chr10	-	421	5	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	0	68726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8421.22701867133	2305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTTAGTATGCTTTA	NA	False	NA	NA	False	NA	NA	NA	128384981	128315256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315289_128383982_128384299_128384526_128384550_128384817_128384843_128384956
ES_00005330	chr10	-	449	5	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	0	68726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8421.22701867133	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTTAGTATGCTTTA	NA	False	NA	NA	False	NA	NA	NA	128385007	128315256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315296_128383987_128384299_128384526_128384550_128384817_128384843_128384956
ES_00005331	chr10	-	449	5	NNC	ENSMUSG00000093674.8	novel	437	4	NA	NA	0	68726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9598.39018729182	226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTTAGTATGCTTTA	NA	False	NA	NA	False	NA	NA	NA	128385007	128315256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315293_128383982_128384299_128384526_128384550_128384817_128384841_128384956
ES_00005332	chr10	-	579	4	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	0	68726	intron_retention	FALSE	non_canonical	0	0	junction_1	9329.97781347844	194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTTAGTATGCTTTA	NA	False	NA	NA	False	NA	NA	NA	128385028	128315256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315294_128383990_128384299_128384526_128384550_128384817
ES_00005333	chr10	-	1667	5	FSM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	0	1	0	-1	multi-exon	FALSE	canonical	3	2189	junction_2	245.142305610435	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTCTTTCTTTCTT	8245	False	NA	-6	True	AATAAA	-19	NA	128329723	128326730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ES_00005335	chr10	-	607	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	1	0	-1	multi-exon	FALSE	canonical	2	43	junction_4	956.330152196405	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGGTTCTTTCTTTC	8242	False	NA	-8	True	AATAAA	-17	NA	128329726	128326732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
ES_00005338	chr10	-	3981	31	FSM	ENSMUSG00000025366.9	ENSMUST00000026427.8	3981	31	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_22	28.253790306199	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGTGCACTGTGTGAA	8319	False	NA	NA	False	AATATA	-21	NA	128361739	128345833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
ES_00005339	chr10	-	2555	21	FSM	ENSMUSG00000025366.9	ENSMUST00000220429.2	2555	21	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_20	29.083113657241	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAAACAGTGCTTCATG	NA	False	NA	-13	True	AATAAA	-7	NA	128356175	128346124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141
ES_00005340	chr10	-	4038	3	FSM	ENSMUSG00000025366.9	ENSMUST00000218092.2	4038	3	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_1	5.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	128354423	128350059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128351806_128352013_128352110_128352227
ES_00005341	chr10	-	3145	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	6	570	6	-570	multi-exon	FALSE	canonical	3	75	junction_2	17	4056	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCTGAGTTATACATAGAA	NA	False	NA	NA	False	NA	NA	NA	128383637	128378401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128381408_128382696_128382761_128383562
ES_00005342	chr10	-	554	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	-10	0	10	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTTTTTGCGGTTCCTT	NA	False	NA	-8	True	AATAAA	-39	NA	128385022	128383972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128384299_128384526_128384550_128384817
ES_00005343	chr10	-	592	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	0	-10	0	10	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	2425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTTTTTGCGGTTCCTT	NA	False	NA	-8	True	AATAAA	-39	NA	128385174	128383972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
ES_00005344	chr10	-	680	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_2	7636	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGTTACGTGTTTT	NA	False	NA	-21	True	AATAAA	-26	NA	128385007	128383985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128384299_128384526_128384843_128384956
ES_00005345	chr10	-	1061	1	FSM	ENSMUSG00000112850.2	ENSMUST00000219955.2	1120	1	-145	204	-145	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTACTGTCTCCTGTCGTCT	NA	False	NA	NA	False	NA	NA	NA	128386827	128385766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128385800_128386800
ES_00005346	chr10	-	2491	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	-8	0	6	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	871	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTTCTCTTTGTGGTGG	8692	False	NA	1	True	AATAAA	-20	NA	128401856	128393628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ES_00005347	chr10	-	6280	28	FSM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	-270	6	-270	-6	multi-exon	FALSE	canonical	0	0	junction_1	16.414470513838	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGTTTTTGTGGATT	NA	False	NA	-6	True	AATAAA	-15	NA	128425791	128403397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128425288
ES_00005349	chr10	-	497	5	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	25484	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7783.0833382407	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCTCACATTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	128462393	128434918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128434959_128460406_128460506_128461075_128461207_128461931_128462110_128462344
ES_00005350	chr10	-	784	5	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	-64	25484	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7783.0833382407	1501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCTCACATTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	128462680	128434918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128434960_128460407_128460506_128461075_128461207_128461931_128462110_128462344
ES_00005352	chr10	-	601	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	0	-5	0	5	multi-exon	FALSE	canonical	3	15147	junction_1	3128	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGAGTGTGTTTATGTCGA	NA	False	NA	-4	True	NA	NA	NA	128462293	128460397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128460506_128461075_128461207_128461931
ES_00005353	chr10	-	681	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462616	128460405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
ES_00005354	chr10	-	903	2	FSM	ENSMUSG00000025362.7	ENSMUST00000219773.2	903	2	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATCACAGGAAAGGGCG	NA	False	NA	NA	False	AGTAAA	-37	NA	128462393	128461255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128462110_128462344
ES_00005358	chr10	-	2401	9	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	0	10880	intron_retention	FALSE	non_canonical	0	0	junction_1	387.75908677296	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTCAATGGAACTGT	8279	False	NA	NA	False	NA	NA	NA	128540868	128522927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128522957_128533815_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00005359	chr10	-	2267	8	NNC	ENSMUSG00000025358.17	novel	2240	7	NA	NA	0	10880	intron_retention	FALSE	non_canonical	0	0	junction_1	433.993745840388	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTCAATGGAACTGT	8275	False	NA	NA	False	NA	NA	NA	128540872	128522927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128522956_128533808_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00005360	chr10	-	2261	8	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	0	10880	intron_retention	FALSE	non_canonical	0	0	junction_1	433.993745840388	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTCAATGGAACTGT	8275	False	NA	NA	False	NA	NA	NA	128540872	128522927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128522954_128533812_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00005361	chr10	-	2433	9	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	0	10880	intron_retention	FALSE	non_canonical	0	0	junction_1	387.75908677296	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTCAATGGAACTGT	8248	False	NA	NA	False	NA	NA	NA	128540899	128522927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128522955_128533812_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00005362	chr10	-	2241	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	0	-1	0	1	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGAATCTCTTTCATATT	8275	False	NA	-15	True	ATTAAA	-21	NA	128540872	128533806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00005363	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	-21	True	ATTAAA	-15	NA	128540899	128533812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00005364	chr10	-	2971	6	FSM	ENSMUSG00000025358.17	ENSMUST00000219099.2	2971	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	293.827160078846	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8247	False	NA	-21	True	ATTAAA	-15	NA	128540900	128533812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794
ES_00005365	chr10	-	2673	4	FSM	ENSMUSG00000025358.17	ENSMUST00000219601.2	2673	4	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_2	120.181344457264	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATATTTGTTAAGCA	8279	False	NA	NA	False	NA	NA	NA	128540868	128536006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128537314_128538281_128538453_128539575_128539697_128539794
ES_00005375	chr10	-	724	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCAGTCTTCATAGGG	NA	False	NA	NA	False	GATAAA	-45	NA	128657514	128654591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
ES_00005381	chr10	+	202	1	Intergenic	novelGene_236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAGCCTAAAAGACAAGG	1591	False	NA	NA	False	NA	NA	NA	3790968	3791170	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_3791000_3791200
ES_00005382	chr10	+	207	1	Intergenic	novelGene_237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGATAACCATAATTTGGA	NA	False	NA	NA	False	NA	NA	NA	5766375	5766582	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_5766400_5766600
ES_00005383	chr10	+	245	1	Intergenic	novelGene_238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGATAATTGGATACAGTG	NA	False	NA	NA	False	NA	NA	NA	7018861	7019106	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_7018900_7019100
ES_00005386	chr10	+	217	1	Intergenic	novelGene_247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGAATGTTTAGAGTGG	NA	False	NA	NA	False	AATAAA	-5	NA	21936471	21936688	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_21936500_21936700
ES_00005387	chr10	+	218	1	Intergenic	novelGene_248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATACTTTTTAATCTG	NA	False	NA	NA	False	NA	NA	NA	23735971	23736189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_23736000_23736200
ES_00005388	chr10	+	242	1	Intergenic	novelGene_249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTGTAAATCTTGAATG	NA	False	NA	NA	False	NA	NA	NA	23867400	23867642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_23867400_23867600
ES_00005390	chr10	+	2744	1	Intergenic	novelGene_252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTCAACTAGTTACTAA	NA	False	NA	NA	False	NA	NA	NA	24730640	24733384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_24730600_24733400
ES_00005392	chr10	+	204	1	Intergenic	novelGene_253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACCAATGCTACTCGACA	4403	False	NA	NA	False	NA	NA	NA	26782908	26783112	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_26782900_26783100
ES_00005393	chr10	+	219	1	Intergenic	novelGene_254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATGACTTTCAAATATC	NA	False	NA	NA	False	NA	NA	NA	27896285	27896504	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_27896300_27896500
ES_00005394	chr10	+	221	1	Intergenic	novelGene_255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCAGTCTTTTTATCCTT	NA	False	NA	NA	False	NA	NA	NA	28608486	28608707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_28608500_28608700
ES_00005395	chr10	+	748	1	Intergenic	novelGene_256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCAAAATTTTCTAGTG	NA	False	NA	NA	False	NA	NA	NA	29748564	29749312	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_29748600_29749300
ES_00005397	chr10	+	1100	1	Intergenic	novelGene_258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACTTCATACAAAACTGT	NA	False	NA	NA	False	NA	NA	NA	30172644	30173744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_30172600_30173700
ES_00005398	chr10	+	509	1	Intergenic	novelGene_260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6396	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGCCAGAAAAAACATTACT	NA	False	NA	NA	False	NA	NA	NA	30174011	30174520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_30174000_30174500
ES_00005399	chr10	+	370	1	Intergenic	novelGene_261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTTAAATTAGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	30175055	30175425	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_30175100_30175400
ES_00005402	chr10	+	202	1	Intergenic	novelGene_265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACCTGCTGCTCTGGCAA	NA	False	NA	NA	False	AAAAAG	-1	NA	33254319	33254521	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_33254300_33254500
ES_00005405	chr10	+	203	1	Intergenic	novelGene_267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAATATTAAAATTTCT	NA	False	NA	NA	False	NA	NA	NA	38847753	38847956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_38847800_38848000
ES_00005406	chr10	+	237	1	Intergenic	novelGene_268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAACTTACTAGCTCAGA	NA	False	NA	NA	False	NA	NA	NA	39055393	39055630	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_39055400_39055600
ES_00005407	chr10	+	282	1	Intergenic	novelGene_271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCTGAGCCATCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	40055147	40055429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_40055100_40055400
ES_00005408	chr10	+	285	1	Intergenic	novelGene_273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	40148517	40148802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_40148500_40148800
ES_00005409	chr10	+	206	1	Intergenic	novelGene_274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGGTGACCTCTTTATA	NA	False	NA	NA	False	NA	NA	NA	40300377	40300583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_40300400_40300600
ES_00005411	chr10	+	210	1	Intergenic	novelGene_282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAATAGACTAAA	NA	False	NA	NA	False	NA	NA	NA	43399794	43400004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_43399800_43400000
ES_00005412	chr10	+	215	1	Intergenic	novelGene_285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCATTTTCTTACTCACA	NA	False	NA	NA	False	NA	NA	NA	45270194	45270409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_45270200_45270400
ES_00005413	chr10	+	238	1	Intergenic	novelGene_286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCCAAAACATATCCTTC	NA	False	NA	NA	False	NA	NA	NA	45358066	45358304	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_45358100_45358300
ES_00005415	chr10	+	294	1	Intergenic	novelGene_289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGTTGATGCAGACAGA	NA	False	NA	NA	False	ATTAAA	-40	NA	55003348	55003642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_55003300_55003600
ES_00005417	chr10	+	261	1	Intergenic	novelGene_292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTTTAGCTCCAGGGCA	24	False	NA	NA	False	NA	NA	NA	58394412	58394673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_58394400_58394700
ES_00005419	chr10	+	225	1	Intergenic	novelGene_295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGGCTAACATGCACATA	NA	False	NA	NA	False	NA	NA	NA	59487131	59487356	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_59487100_59487400
ES_00005420	chr10	+	218	1	Intergenic	novelGene_298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	375	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTCTTAACTAGGCAT	NA	False	NA	NA	False	NA	NA	NA	59829867	59830085	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_59829900_59830100
ES_00005421	chr10	+	286	1	Intergenic	novelGene_299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	395	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAAGAGCAAGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	60176087	60176373	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_60176100_60176400
ES_00005422	chr10	+	216	1	Intergenic	novelGene_301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCACCACCAACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	60999701	60999917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_60999700_60999900
ES_00005424	chr10	+	220	1	Intergenic	novelGene_306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	580	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAACTCCCTAGGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	62525689	62525909	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62525700_62525900
ES_00005426	chr10	+	240	1	Intergenic	novelGene_311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTTCCACCTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	62871092	62871332	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62871100_62871300
ES_00005427	chr10	+	207	1	Intergenic	novelGene_312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTCTGGACATCAGC	7991	False	NA	NA	False	NA	NA	NA	63190795	63191002	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_63190800_63191000
ES_00005429	chr10	+	206	1	Intergenic	novelGene_313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAATCATTGATGA	NA	False	NA	NA	False	NA	NA	NA	66356331	66356537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_66356300_66356500
ES_00005431	chr10	+	205	1	Intergenic	novelGene_316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCTGGAGGTTTTACAGT	2302	False	NA	NA	False	NA	NA	NA	67121808	67122013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_67121800_67122000
ES_00005432	chr10	+	395	1	Intergenic	novelGene_320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCACCTTCTTGATTG	NA	False	NA	NA	False	NA	NA	NA	71159122	71159517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_71159100_71159500
ES_00005433	chr10	+	207	1	Intergenic	novelGene_322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGACCTTTTATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	71820500	71820707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_71820500_71820700
ES_00005435	chr10	+	217	1	Intergenic	novelGene_324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGGTTCTTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	73091176	73091393	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_73091200_73091400
ES_00005436	chr10	+	317	1	Intergenic	novelGene_330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCATCAGATCCCATTACA	NA	False	NA	NA	False	NA	NA	NA	75454431	75454748	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75454400_75454700
ES_00005437	chr10	+	236	1	Intergenic	novelGene_333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTCTACAACACAAAATA	NA	False	NA	NA	False	AATAAA	-5	NA	75632177	75632413	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75632200_75632400
ES_00005439	chr10	+	213	1	Intergenic	novelGene_340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	545	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAACAGGCCAGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	76984476	76984689	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_76984500_76984700
ES_00005442	chr10	+	213	1	Intergenic	novelGene_342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCATCTGAAGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	78250713	78250926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_78250700_78250900
ES_00005443	chr10	+	205	1	Intergenic	novelGene_343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCCGAATTAACTCTTGA	NA	False	NA	NA	False	NA	NA	NA	78338757	78338962	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_78338800_78339000
ES_00005445	chr10	+	478	1	Intergenic	novelGene_347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79595139	79595617	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79595100_79595600
ES_00005446	chr10	+	220	1	Intergenic	novelGene_352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	430	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAGAGAGTATACTGGA	73	False	NA	NA	False	NA	NA	NA	80047328	80047548	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_80047300_80047500
ES_00005447	chr10	+	235	1	Intergenic	novelGene_354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTGGGACTAATTAATG	NA	False	NA	NA	False	NA	NA	NA	80579296	80579531	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_80579300_80579500
ES_00005449	chr10	+	203	1	Intergenic	novelGene_358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5800	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTGGCCTTTCAGAA	6128	False	NA	NA	False	NA	NA	NA	81006846	81007049	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81006800_81007000
ES_00005450	chr10	+	204	1	Intergenic	novelGene_360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTCAAATCTTTTATT	455	False	NA	NA	False	NA	NA	NA	81357999	81358203	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81358000_81358200
ES_00005451	chr10	+	385	1	Intergenic	novelGene_367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACCAGCCTACATTTTA	NA	False	NA	NA	False	NA	NA	NA	81977561	81977946	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81977600_81977900
ES_00005455	chr10	+	202	1	Intergenic	novelGene_371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCTATTCATGAACAGCA	NA	False	NA	NA	False	NA	NA	NA	84908358	84908560	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_84908400_84908600
ES_00005456	chr10	+	220	1	Intergenic	novelGene_372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATGCATTGTTAAGT	5662	False	NA	NA	False	NA	NA	NA	84923371	84923591	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_84923400_84923600
ES_00005457	chr10	+	213	1	Intergenic	novelGene_374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATGAAAATTTATATTAAA	NA	False	NA	NA	False	NA	NA	NA	85637592	85637805	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_85637600_85637800
ES_00005459	chr10	+	357	1	Intergenic	novelGene_379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGGAAATTGCCACACCA	NA	False	NA	NA	False	AGTAAA	-43	NA	89714108	89714465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_89714100_89714500
ES_00005460	chr10	+	365	1	Intergenic	novelGene_382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAAGGGGGAATTT	NA	False	NA	NA	False	NA	NA	NA	93621547	93621912	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_93621500_93621900
ES_00005461	chr10	+	602	1	Intergenic	novelGene_383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTCAATGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	93623354	93623956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_93623400_93624000
ES_00005462	chr10	+	1060	1	Intergenic	novelGene_384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTGAGATAATTATAAAAG	NA	False	NA	NA	False	NA	NA	NA	93624257	93625317	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_93624300_93625300
ES_00005464	chr10	+	373	1	Intergenic	novelGene_385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAGTGAAGCAATCACACA	NA	False	NA	NA	False	NA	NA	NA	95264813	95265186	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_95264800_95265200
ES_00005465	chr10	+	217	1	Intergenic	novelGene_387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTAATTGCTTTCTATTC	NA	False	NA	NA	False	NA	NA	NA	95487403	95487620	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_95487400_95487600
ES_00005466	chr10	+	530	1	Intergenic	novelGene_388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACAATATTCTTATAAAT	5388	False	NA	NA	False	NA	NA	NA	97398872	97399402	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_97398900_97399400
ES_00005469	chr10	+	207	1	Intergenic	novelGene_391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTCTTTTTATCACCC	NA	False	NA	NA	False	NA	NA	NA	108129393	108129600	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_108129400_108129600
ES_00005470	chr10	+	241	1	Intergenic	novelGene_392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGCAAATATTTCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	108142382	108142623	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_108142400_108142600
ES_00005471	chr10	+	225	1	Intergenic	novelGene_394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCGGAATTCTTAACC	NA	False	NA	NA	False	NA	NA	NA	111071806	111072031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_111071800_111072000
ES_00005472	chr10	+	228	1	Intergenic	novelGene_395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATCTACTTTTTAAGCC	NA	False	NA	NA	False	NA	NA	NA	113830943	113831171	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_113830900_113831200
ES_00005474	chr10	+	207	1	Intergenic	novelGene_398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAACTCTTATAAGGAC	NA	False	NA	NA	False	NA	NA	NA	116874093	116874300	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_116874100_116874300
ES_00005475	chr10	+	218	1	Intergenic	novelGene_403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAAGAGGTCCT	NA	False	NA	NA	False	NA	NA	NA	117488713	117488931	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_117488700_117488900
ES_00005476	chr10	+	224	1	Intergenic	novelGene_404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCACTCGCAAATGAA	NA	False	NA	NA	False	NA	NA	NA	117686758	117686982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_117686800_117687000
ES_00005478	chr10	+	206	1	Intergenic	novelGene_407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGCTAATTTTAATTGG	NA	False	NA	NA	False	NA	NA	NA	120102110	120102316	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120102100_120102300
ES_00005480	chr10	+	219	1	Intergenic	novelGene_418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGTTTTTCTAACAG	NA	False	NA	NA	False	NA	NA	NA	122676041	122676260	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_122676000_122676300
ES_00005481	chr10	+	213	1	Intergenic	novelGene_419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1983	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGCAATTCTTAACTTA	NA	False	NA	NA	False	NA	NA	NA	125635866	125636079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_125635900_125636100
ES_00005482	chr10	+	242	1	Intergenic	novelGene_424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCCTCCTCCTCCTC	NA	False	NA	NA	False	NA	NA	NA	127465549	127465791	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_127465500_127465800
ES_00005483	chr10	+	250	1	Intergenic	novelGene_425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	127916492	127916742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_127916500_127916700
ES_00005484	chr10	+	250	1	Intergenic	novelGene_426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGCACTGAGCACTT	NA	False	NA	NA	False	ATTAAA	-2	NA	128004848	128005098	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128004800_128005100
ES_00005486	chr10	+	219	1	Intergenic	novelGene_429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTAAGAGCTGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	128168220	128168439	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128168200_128168400
ES_00005488	chr10	+	243	1	Intergenic	novelGene_431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTGTTTCTAAGTATC	NA	False	NA	NA	False	NA	NA	NA	128734175	128734418	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128734200_128734400
ES_00005489	chr10	+	312	1	Intergenic	novelGene_432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	371	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGGCTCATGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	128737761	128738073	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128737800_128738100
ES_00005493	chr10	+	7329	16	FSM	ENSMUSG00000040624.19	ENSMUST00000239159.2	4478	16	0	-2851	0	0	multi-exon	FALSE	canonical	3	8	junction_1	7.74137512906389	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATTGAATTAATGGGT	NA	False	NA	NA	False	AATAAA	-22	NA	3784878	3917303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_3785077_3822926_3823442_3853556_3853658_3869135_3869206_3880206_3880254_3883596_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3913400
ES_00005496	chr10	+	6273	5	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-96975	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	599.951820982319	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4119404	4309470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4119433_4216329_4216669_4263742_4263858_4303141_4307940_4308477
ES_00005497	chr10	+	6345	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-12499	0	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_2	619.833848704635	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4203880	4309470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4203967_4207397_4207470_4216387_4216669_4263742_4263858_4303141_4307940_4308477
ES_00005498	chr10	+	6362	7	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-12495	55442	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	640.51769426509	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAACAAATTACTTGTAA	NA	False	NA	NA	False	NA	NA	NA	4203884	4364912	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4203967_4207397_4207470_4216390_4216669_4263742_4263858_4303141_4307940_4308477_4309469_4364886
ES_00005499	chr10	+	6382	7	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-12495	55442	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	634.591732270967	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAACAAATTACTTGTAA	NA	False	NA	NA	False	NA	NA	NA	4203884	4364912	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_4203967_4207397_4207470_4216370_4216669_4263742_4263858_4303141_4307940_4308477_4309469_4364886
ES_00005502	chr10	+	4200	21	FSM	ENSMUSG00000090112.9	ENSMUST00000159810.8	4171	21	-29	0	-29	0	multi-exon	TRUE	canonical	3	9	junction_14	19.7809883474006	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGGAATATAAGGTACA	NA	False	NA	NA	False	NA	NA	NA	11025141	11063894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_11025331_11027356_11028013_11030402_11030533_11032763_11032983_11035261_11035341_11036210_11036362_11037862_11037972_11038552_11038807_11040088_11040740_11042229_11042482_11043577_11043657_11045722_11045887_11045990_11046248_11047616_11047746_11054477_11054567_11057255_11057349_11059517_11059626_11061063_11061207_11062124_11062299_11062586_11062650_11063683
ES_00005507	chr10	+	614	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACTGTATATGGGACT	NA	False	NA	NA	False	GATAAA	-17	NA	11484965	11485579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_11485000_11485600
ES_00005511	chr10	+	581	2	NNC	ENSMUSG00000112227.2	novel	628	3	NA	NA	-119	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACTAAAGATCAAGTATT	NA	False	NA	NA	False	NA	NA	NA	15667405	15682813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_15667792_15682618
ES_00005513	chr10	+	4432	10	FSM	ENSMUSG00000039891.7	ENSMUST00000037964.7	4422	10	-10	0	-10	0	multi-exon	FALSE	canonical	1	5	junction_4	2.43938871112224	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTAGTAGGTTTTTTA	NA	False	NA	NA	False	ATTAAA	-17	NA	17671993	17721413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_17672170_17674835_17675282_17682512_17682605_17690976_17691148_17703539_17703735_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
ES_00005514	chr10	+	2607	20	NNC	ENSMUSG00000019854.18	novel	2595	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	76.2132160037143	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACATTGTATTTGTTGG	NA	False	NA	14	True	AATAAA	-25	NA	17931687	18000892	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983418_17983497_17990146_17990235_17991463_17991566_17993409_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ES_00005515	chr10	+	1301	4	FSM	ENSMUSG00000039835.17	ENSMUST00000160602.8	2079	4	10	768	10	-768	multi-exon	FALSE	canonical	2	6	junction_1	12.0830459735946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCTTTGTGGTGTGGAC	NA	False	NA	NA	False	TATAAA	-9	NA	18283432	18387490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_18284263_18348666_18348820_18373780_18373906_18387297
ES_00005516	chr10	+	7284	7	FSM	ENSMUSG00000039835.17	ENSMUST00000037341.14	7321	7	37	0	37	0	multi-exon	FALSE	canonical	2	6	junction_1	10.5948100502085	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTGTATGTGCATTTA	NA	False	NA	22	True	AATAAA	-26	NA	18283459	18409640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_18284263_18348666_18348820_18373780_18373906_18387297_18387491_18399538_18402791_18403283_18403417_18407015
ES_00005517	chr10	+	641	2	FSM	ENSMUSG00000020009.14	ENSMUST00000110989.3	676	2	35	0	35	0	multi-exon	FALSE	canonical	3	33	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACAGATGGTTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	19467740	19473599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_19467946_19473163
ES_00005521	chr10	+	625	1	FSM	ENSMUSG00000037608.17	ENSMUST00000216560.2	3064	1	-133	2572	-70	-2572	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCCTTGGGGGAGGCGTC	2720	False	NA	NA	False	NA	NA	NA	20188144	20188769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_20188100_20188800
ES_00005524	chr10	+	1062	3	FSM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	4.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGGACTCTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	21469043	21498275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_21469134_21469230_21469472_21497544
ES_00005525	chr10	+	2735	1	FSM	ENSMUSG00000097245.2	ENSMUST00000181698.2	2354	1	-31	-350	-31	350	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATCCAA	NA	False	NA	NA	False	NA	NA	NA	22219306	22222041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_22219300_22222000
ES_00005526	chr10	+	224	3	FSM	ENSMUSG00000037455.17	ENSMUST00000127841.2	224	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	44.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTGGTCTTCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	23681873	23694979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_23681939_23692190_23692328_23694957
ES_00005527	chr10	+	533	1	FSM	ENSMUSG00000082437.2	ENSMUST00000120552.2	533	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACTAGAAAAACAAATTAAAA	2271	False	NA	NA	False	NA	NA	NA	23897126	23897659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_23897100_23897700
ES_00005528	chr10	+	2490	4	FSM	ENSMUSG00000019997.12	ENSMUST00000176228.2	2490	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	4.32049379893857	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGCTGTTCATTCTTG	NA	False	NA	10	True	AATAAA	-26	NA	24471623	24474581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629
ES_00005531	chr10	+	870	3	FSM	ENSMUSG00000019978.17	ENSMUST00000219201.2	1126	3	0	256	0	-256	multi-exon	FALSE	canonical	3	390	junction_1	8	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGAGCCTGGCCATCC	3905	False	NA	NA	False	AAGAAA	-31	NA	25381491	25388979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_25382172_25383674_25383756_25388870
ES_00005535	chr10	+	5953	31	NNC	ENSMUSG00000019889.11	novel	4754	34	NA	NA	0	-77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_30	39.6069017554601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACTGATTGAACATCA	NA	False	NA	17	True	AATAAA	-17	NA	27950852	28473316	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797_28472368_28472423
ES_00005538	chr10	+	398	1	FSM	ENSMUSG00000039684.10	ENSMUST00000050717.10	2721	1	223	2100	223	-2100	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAAATTGAGCAGGTCGA	NA	False	NA	NA	False	NA	NA	NA	31124373	31124771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_31124400_31124800
ES_00005540	chr10	+	2805	2	FSM	ENSMUSG00000000295.14	ENSMUST00000160447.2	2781	2	-24	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAGAAAGAAGATGCCA	NA	False	NA	NA	False	NA	NA	NA	31189378	31193839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_31190633_31192288
ES_00005542	chr10	+	3857	1	FSM	ENSMUSG00000039485.9	ENSMUST00000047935.8	3879	1	22	0	22	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTCTGGGTGAATGT	NA	False	NA	NA	False	AATAAA	-7	NA	34173459	34177316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_34173500_34177300
ES_00005543	chr10	+	539	3	FSM	ENSMUSG00000019777.17	ENSMUST00000123010.2	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_2	84	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCTTCCCTGTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	36874167	36877607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_36874566_36876364_36876423_36877524
ES_00005544	chr10	+	706	6	FSM	ENSMUSG00000019845.9	ENSMUST00000213237.2	695	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	143	junction_2	8.26075057122535	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGAATTCCCAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	39009960	39020412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370
ES_00005547	chr10	+	724	1	FSM	ENSMUSG00000096171.2	ENSMUST00000099956.2	1008	1	290	-6	290	6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGACCACCCACCCCAGCA	NA	False	NA	NA	False	AAGAAA	-3	NA	39888151	39888875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39888200_39888900
ES_00005548	chr10	+	210	2	Intergenic	novelGene_275	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTCATTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40839047	40841114	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_40839064_40840920
ES_00005549	chr10	+	3385	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_3	52.4446973581861	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9132	False	NA	29	True	AATAAA	-18	NA	41352348	41363026	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ES_00005552	chr10	+	218	2	Antisense	novelGene_ENSMUSG00000086434.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAACAAAAACAAACCAA	1260	False	NA	NA	False	AATAGA	-31	NA	42536368	42611643	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_42536556_42611612
ES_00005553	chr10	+	4381	4	FSM	ENSMUSG00000038280.13	ENSMUST00000154048.2	4387	4	0	6	0	-6	multi-exon	FALSE	canonical	3	210	junction_2	8.98146239020499	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTTGAAAAAAAAATGCTT	NA	False	NA	NA	False	NA	NA	NA	42554961	42575981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_42555394_42559155_42559271_42568906_42569005_42572245
ES_00005554	chr10	+	4368	8	FSM	ENSMUSG00000071317.5	ENSMUST00000095715.5	4368	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	2.44114392723358	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGTGTATTTTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	45211867	45248575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_45211978_45215315_45215553_45219129_45219255_45222222_45222411_45223880_45223990_45229845_45230014_45230846_45230989_45245286
ES_00005558	chr10	+	612	1	FSM	ENSMUSG00000056219.8	ENSMUST00000168554.3	506	1	41	-147	41	147	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGGGCAGTGGGATGGT	6102	False	NA	NA	False	NA	NA	NA	53351100	53351712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_53351100_53351700
ES_00005559	chr10	+	968	3	FSM	ENSMUSG00000019857.8	ENSMUST00000218043.2	735	3	19	-252	19	252	multi-exon	FALSE	canonical	3	727	junction_2	53	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCACTGGGAATGGTTAA	1843	False	NA	NA	False	TATAAA	-25	NA	53473369	53483031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_53473395_53478443_53478560_53482204
ES_00005564	chr10	+	2139	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-22	34603	-22	-34603	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTCCTTTAGATCTTCA	921	False	NA	NA	False	NA	NA	NA	58333747	58377463	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
ES_00005565	chr10	+	272	1	FSM	ENSMUSG00000112424.2	ENSMUST00000218604.2	2298	1	15	2011	15	-2011	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAGCAAAACTATGTTAC	NA	False	NA	NA	False	NA	NA	NA	58593106	58593378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_58593100_58593400
ES_00005566	chr10	+	1797	5	FSM	ENSMUSG00000020111.16	ENSMUST00000165405.2	1732	5	-95	30	0	-30	multi-exon	FALSE	canonical	3	163	junction_3	28.4725745235657	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCAGATTTTCTCTGAT	NA	False	NA	NA	False	NA	NA	NA	59538384	59587497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325
ES_00005567	chr10	+	938	1	FSM	ENSMUSG00000091941.2	ENSMUST00000032395.8	858	1	-45	-35	-45	35	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGACTATGGTGGTGGTG	5393	False	NA	NA	False	NA	NA	NA	59642333	59643271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59642300_59643300
ES_00005568	chr10	+	564	1	Intergenic	novelGene_296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGTTAGCTATTTGG	6336	False	NA	NA	False	NA	NA	NA	59643276	59643840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_59643300_59643800
ES_00005569	chr10	+	235	2	Intergenic	novelGene_297	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	277	junction_1	0	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAAATGTTATAG	5119	False	NA	NA	False	NA	NA	NA	59707773	59712921	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_59707970_59712882
ES_00005570	chr10	+	1495	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAAGCCTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	59715439	59732597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
ES_00005571	chr10	+	228	2	NNC	ENSMUSG00000020096.22	novel	982	4	NA	NA	13	22127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGTGTTTTTAACCAT	NA	False	NA	NA	False	NA	NA	NA	61011053	61046747	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_61011083_61046548
ES_00005572	chr10	+	3284	2	FSM	ENSMUSG00000020088.11	ENSMUST00000218968.2	483	2	-902	-1899	-902	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61524413	61529076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61525685_61527063
ES_00005573	chr10	+	2494	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCACTGGTTTGCCGGAC	NA	False	NA	NA	False	NA	NA	NA	61765511	61768371	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_61767485_61767595_61767722_61767976
ES_00005574	chr10	+	807	1	FSM	ENSMUSG00000112574.2	ENSMUST00000218711.2	801	1	-6	0	-6	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCACTAAATTTTCTGTA	NA	False	NA	NA	False	AAAAAG	-37	NA	61795396	61796203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_61795400_61796200
ES_00005575	chr10	+	1201	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	0	17	0	-17	multi-exon	FALSE	canonical	3	18	junction_1	0	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAATTTAACCATCTGA	NA	False	NA	NA	False	NA	NA	NA	62176385	62186289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_62176563_62185265
ES_00005577	chr10	+	274	2	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	211	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATATAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	62733565	62752767	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_62733617_62752544
ES_00005581	chr10	+	4054	19	NNC	ENSMUSG00000020070.19	novel	4130	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	22.502400420652	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTAAGAAATTAACACTT	NA	False	NA	NA	False	AATAAA	-21	NA	62816071	62849734	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_62816112_62818449_62818624_62824901_62825020_62826758_62826861_62828895_62829020_62829758_62829821_62830483_62830550_62831091_62831159_62833659_62833762_62833857_62833975_62836011_62836180_62837961_62838060_62840435_62840556_62842403_62842534_62843452_62843548_62845134_62845184_62847196_62847275_62847368_62849162_62849183
ES_00005583	chr10	+	804	3	FSM	ENSMUSG00000020072.16	ENSMUST00000130531.2	847	3	43	0	43	0	multi-exon	FALSE	canonical	2	8	junction_1	1.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGACAGGATTTCTCTG	4372	False	NA	NA	False	AAGAAA	-40	NA	62890031	62893907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_62890285_62892557_62892621_62893419
ES_00005584	chr10	+	334	4	FSM	ENSMUSG00000112129.2	ENSMUST00000219829.2	748	4	37	377	37	-377	multi-exon	FALSE	canonical	2	2	junction_1	0.942809041582063	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCTCCAGATCAGGGGG	7515	False	NA	NA	False	NA	NA	NA	62903281	62907826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_62903318_62903436_62903467_62907185_62907275_62907647
ES_00005587	chr10	+	808	6	FSM	ENSMUSG00000020064.10	ENSMUST00000220097.2	808	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	157.427570647584	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATATGCCCGTCTACCAC	NA	False	NA	NA	False	NA	NA	NA	63126282	63144229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_63126456_63126958_63127063_63134898_63135019_63142126_63142226_63143520_63143689_63144085
ES_00005588	chr10	+	863	3	FSM	ENSMUSG00000037876.18	ENSMUST00000174062.8	2772	3	10	1899	10	-1899	multi-exon	FALSE	canonical	3	170	junction_1	5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGGAACTGCACACCAAT	NA	False	NA	NA	False	NA	NA	NA	66931913	67025628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_66932498_66993685_66993851_67025514
ES_00005591	chr10	+	3201	19	ISM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-114	8842	21	-4	5prime_fragment	FALSE	canonical	3	64	junction_16	12.9177120246047	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACATGAATGCAGATGTA	NA	False	NA	11	True	AATAAA	-16	NA	69761669	69851631	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397
ES_00005592	chr10	+	3725	16	ISM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	39	15072	25	1030	5prime_fragment	FALSE	canonical	3	68	junction_4	11.2853887837327	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCATTTTGTTATTGTA	NA	False	NA	NA	False	ATTAAA	-11	NA	69761673	69836563	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184
ES_00005593	chr10	+	630	4	FSM	ENSMUSG00000048701.14	ENSMUST00000156001.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	11.5758369027902	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGGAAAT	4611	False	NA	NA	False	NA	NA	NA	70010840	70024003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_70010998_70017989_70018091_70023520_70023646_70023756
ES_00005594	chr10	+	5325	7	NNC	ENSMUSG00000060733.14	novel	5447	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	262	junction_3	33.3416656252603	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTCCGTTGATTAGCAC	2289	False	NA	4	True	ATTAAA	-17	NA	71183665	71221715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534_71212617_71217034_71218626_71218674
ES_00005596	chr10	+	653	5	NNC	ENSMUSG00000020180.11	novel	3036	4	NA	NA	0	834	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1594.9763321128	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTTTCTCTGTGTAATCCT	1894	False	NA	NA	False	NA	NA	NA	75353876	75374049	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094_75371296_75374020
ES_00005599	chr10	+	2131	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.89112761149	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75399924	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75399964_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00005601	chr10	+	2349	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	60.7702044712644	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75404470	75422025	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_75404804_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00005602	chr10	+	2128	14	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	102.693604140477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75404476	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_75404601_75409444_75409583_75410065_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00005603	chr10	+	2109	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	78.6791101046771	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75404499	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_75404605_75409444_75409583_75410065_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00005604	chr10	+	1345	7	FSM	ENSMUSG00000009092.6	ENSMUST00000009236.6	1321	7	-25	1	-25	-1	multi-exon	FALSE	canonical	2	8	junction_5	4.01732359773132	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTGACTCAATATGTTAG	NA	False	NA	NA	False	NA	NA	NA	75729221	75731774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75729352_75729452_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
ES_00005606	chr10	+	720	5	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	268	30200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7289.49097588439	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAACAAAACAAAAA	7214	False	NA	NA	False	NA	NA	NA	75771674	75803781	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408_75773576_75803748
ES_00005607	chr10	+	724	5	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	268	30200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7289.49097588439	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAACAAAACAAAAA	7214	False	NA	NA	False	NA	NA	NA	75771674	75803781	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408_75773581_75803749
ES_00005608	chr10	+	610	2	FSM	ENSMUSG00000000903.4	ENSMUST00000121151.2	729	2	103	16	103	-16	multi-exon	FALSE	canonical	2	2	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAAATAAATGTCA	NA	False	NA	NA	False	NA	NA	NA	75778993	75785455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75779125_75784976
ES_00005613	chr10	+	4945	2	FSM	ENSMUSG00000049764.9	ENSMUST00000061617.7	5097	2	-4	156	0	-156	multi-exon	FALSE	canonical	3	112	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATCCAAAGATCGAACTCT	NA	False	NA	NA	False	NA	NA	NA	75868483	75878912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75868584_75874067
ES_00005614	chr10	+	253	1	Intergenic	novelGene_338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGGTGGCACACGCCT	NA	False	NA	NA	False	NA	NA	NA	75919724	75919977	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75919700_75920000
ES_00005616	chr10	+	379	3	FSM	ENSMUSG00000001436.16	ENSMUST00000133059.8	391	3	12	0	12	0	multi-exon	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCACCTGGCTGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	76868116	76877681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_76868234_76874183_76874414_76877649
ES_00005619	chr10	+	778	4	FSM	ENSMUSG00000009291.14	ENSMUST00000162895.8	773	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	637	junction_2	19.2930615046504	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCCTCTGTGTCTGTATG	8960	False	NA	-29	True	NA	NA	NA	77425222	77433066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_77425577_77428679_77428852_77429697_77429745_77432861
ES_00005622	chr10	+	3020	12	FSM	ENSMUSG00000032763.12	ENSMUST00000218875.2	3020	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.4725286148956	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5486	False	NA	30	True	AATAAA	-39	NA	78410420	78420336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297
ES_00005623	chr10	+	2335	14	FSM	ENSMUSG00000032763.12	ENSMUST00000218215.2	2331	14	-4	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.1491887433841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACAGAATCTGTGTATA	5890	False	NA	20	True	AATAAA	-29	NA	78410824	78420326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711
ES_00005624	chr10	+	2211	1	FSM	ENSMUSG00000111977.2	ENSMUST00000219233.2	1665	1	-563	17	-563	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGCACAATGCTAACCG	NA	False	NA	NA	False	AATAAA	-3	NA	79473126	79475337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79473100_79475300
ES_00005625	chr10	+	799	4	FSM	ENSMUSG00000020307.16	ENSMUST00000219791.2	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	942.677510545833	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGGGGACCGACTGCCT	NA	False	NA	NA	False	NA	NA	NA	79518237	79524109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79523682
ES_00005628	chr10	+	1954	5	FSM	ENSMUSG00000020325.11	ENSMUST00000020575.5	1955	5	1	0	1	0	multi-exon	FALSE	canonical	2	5	junction_4	2.6809513236909	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTATTTTCTGCCTCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	79613106	79618464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79613232_79614396_79614583_79615798_79616015_79616957_79617186_79617265
ES_00005629	chr10	+	2406	5	FSM	ENSMUSG00000035852.12	ENSMUST00000046833.5	2414	5	8	0	7	0	multi-exon	FALSE	canonical	1	2	junction_1	3.57071421427143	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGAGCAGAGGATGTG	NA	False	NA	3	True	AATAAA	-17	NA	79658468	79666286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79658521_79661529_79663269_79663711_79663846_79665226_79665266_79665844
ES_00005631	chr10	+	2601	13	FSM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	-3	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	485.428926883798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1621	False	NA	31	True	ATTAAA	-15	NA	79690498	79700193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ES_00005633	chr10	+	214	2	Intergenic	novelGene_350	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	108	junction_1	0	2243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGGTCCATTTTCAGTA	2948	False	NA	NA	False	NA	NA	NA	79877458	79881353	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79877516_79881196
ES_00005634	chr10	+	584	3	NNC	ENSMUSG00000075706.12	novel	879	7	NA	NA	-136	-1672	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_2	6	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCCCAGCCCCGCCCAA	1811	False	NA	NA	False	NA	NA	NA	79882863	79889269	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_79883210_79884579_79884663_79889114
ES_00005635	chr10	+	995	7	FSM	ENSMUSG00000075706.12	ENSMUST00000097227.11	995	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	2928.20988641335	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	1204	False	NA	4	True	AATAAA	-14	NA	79889870	79892273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79890135_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ES_00005636	chr10	+	380	2	FSM	ENSMUSG00000075706.12	ENSMUST00000154095.2	380	2	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCCAGAGGCCTGTGGC	817	False	NA	-70	True	NA	NA	NA	79891727	79892199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79891782_79891873
ES_00005638	chr10	+	921	4	NNC	ENSMUSG00000003072.16	novel	931	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1166.91397378822	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTGAGTGTTCTGTTTC	4445	False	NA	11	True	ATTAAA	-10	NA	79978148	79981643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_79978441_79979665_79979820_79981052_79981140_79981255
ES_00005639	chr10	+	3580	8	NNC	ENSMUSG00000035621.14	novel	3727	9	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	5.84144237150311	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTGCCCCTGGCTGTTC	NA	False	NA	25	True	AATAAA	-17	NA	79984120	79994202	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_79984184_79985515_79986148_79987211_79987300_79987494_79987558_79989649_79989968_79990167_79990307_79990967_79991241_79992198
ES_00005640	chr10	+	737	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	11	-15	combination_of_known_splicesites	FALSE	canonical	1	5	junction_5	159.6200349441	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGACCCAGAACCCCC	6202	False	NA	NA	False	AATAAA	-2	NA	80003684	80008605	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80008247_80008347_80008470
ES_00005643	chr10	+	678	4	FSM	ENSMUSG00000035486.15	ENSMUST00000146826.2	701	4	0	23	0	-23	multi-exon	FALSE	canonical	2	8	junction_2	1.4142135623731	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGTAATTCAGTGAACAG	NA	False	NA	NA	False	NA	NA	NA	80195103	80196596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80195164_80195243_80195340_80195988_80196188_80196273
ES_00005645	chr10	+	464	5	FSM	ENSMUSG00000113949.2	ENSMUST00000223256.2	444	5	-20	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	278.938501286574	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGCTGGGGCGCATGGTAA	NA	False	NA	NA	False	NA	NA	NA	80438705	80446947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861
ES_00005647	chr10	+	1793	8	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	34270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	233.339552881151	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAAAGAAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	80438757	80485887	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437_80451618_80485854
ES_00005648	chr10	+	4517	6	FSM	ENSMUSG00000035370.10	ENSMUST00000218067.2	4517	6	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_4	45.0271029492238	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80441854	80451618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ES_00005650	chr10	+	4126	6	FSM	ENSMUSG00000003345.17	ENSMUST00000217902.2	4135	6	9	0	9	0	multi-exon	FALSE	canonical	3	656	junction_1	52.1344415909483	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCCTGGGCTTTACCA	NA	False	NA	17	True	GGGGCT	-44	NA	80472007	80476583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80473763_80473843_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918
ES_00005651	chr10	+	1074	10	FSM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	122	0	122	0	multi-exon	FALSE	canonical	2	4	junction_9	7.62711213410245	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538381	80541207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
ES_00005653	chr10	+	8819	27	ISM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	-66	0	-66	0	intron_retention	FALSE	canonical	3	61	junction_7	16.4622573531021	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTTCTCAGTGCCAGTT	1589	False	NA	16	True	AATAAA	-20	NA	80590973	80631295	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444
ES_00005654	chr10	+	5096	28	NNC	ENSMUSG00000061589.15	novel	6808	28	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_7	21.7942114865619	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGACTCCGTCCCGGTG	1696	False	NA	6	True	TATAAA	-30	NA	80591080	80629652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609575_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
ES_00005655	chr10	+	208	1	Intergenic	novelGene_355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTCTTACAGGTTGCC	2984	False	NA	NA	False	NA	NA	NA	80625701	80625909	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_80625700_80625900
ES_00005657	chr10	+	523	3	FSM	ENSMUSG00000035242.16	ENSMUST00000179341.2	520	3	0	-3	0	-2	multi-exon	FALSE	canonical	3	460	junction_2	3355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTGTGTCCTGCT	NA	False	NA	17	True	AATAAA	-17	NA	80664426	80665122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80664468_80664544_80664631_80664726
ES_00005659	chr10	+	3149	11	FSM	ENSMUSG00000035206.11	ENSMUST00000218789.2	3151	11	0	2	0	2	multi-exon	FALSE	canonical	3	19	junction_2	7.13021738799036	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGCCTCCTGTCCTGTG	2166	False	NA	9	True	ATTAAA	-17	NA	80698572	80704540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333
ES_00005660	chr10	+	917	2	FSM	ENSMUSG00000035027.19	ENSMUST00000128937.2	917	2	0	0	0	0	multi-exon	FALSE	canonical	3	752	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTCTCATTAAGAACCCA	NA	False	NA	NA	False	NA	NA	NA	80956687	80958396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80956945_80957736
ES_00005661	chr10	+	5938	3	FSM	ENSMUSG00000035011.16	ENSMUST00000048128.15	5938	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	37	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGCCTGGTCTCTGT	NA	False	NA	22	True	CATAAA	-38	NA	80972104	80988056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80972534_80979795_80981052_80983803
ES_00005663	chr10	+	1978	13	FSM	ENSMUSG00000004933.18	ENSMUST00000105328.10	2228	13	-5	255	-5	125	multi-exon	FALSE	canonical	2	5	junction_9	3.36237350030534	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAAAGTCCCTACCCAC	NA	False	NA	NA	False	NA	NA	NA	81093127	81098944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81093409_81094313_81094374_81095010_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097550_81097628_81097703_81097794_81097991_81098281_81098369_81098456
ES_00005664	chr10	+	1998	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	59.7863696840676	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1339	False	NA	18	True	TATAAA	-21	NA	81104024	81109070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_81104154_81104691_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ES_00005674	chr10	+	321	2	FSM	ENSMUSG00000034771.16	ENSMUST00000153812.2	933	2	612	0	612	0	multi-exon	FALSE	canonical	3	4	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCCACTGTGTATGAGG	5084	False	NA	NA	False	NA	NA	NA	81425086	81426135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81425331_81426058
ES_00005675	chr10	+	4614	18	FSM	ENSMUSG00000054708.18	ENSMUST00000154707.8	4635	18	21	0	15	0	multi-exon	FALSE	canonical	1	3	junction_2	29.0957136642705	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAGTCGCAAGAGTTG	7991	False	NA	NA	False	AATAAA	-26	NA	81469557	81483441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81469590_81470500_81470588_81470698_81470830_81470903_81470993_81471521_81471587_81472202_81472261_81473902_81473974_81474104_81474212_81474394_81474583_81475140_81475771_81475861_81476647_81476725_81476825_81477809_81477883_81478134_81478254_81478350_81479728_81482138_81482268_81482626_81482693_81482933
ES_00005677	chr10	+	1832	4	Antisense	novelGene_ENSMUSG00000112697.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	10.9645894689324	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTGATACTGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	81682361	81693758	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_81682454_81691309_81691437_81691636_81691698_81692206
ES_00005679	chr10	+	443	1	FSM	ENSMUSG00000112381.2	ENSMUST00000218581.2	945	1	141	361	141	-361	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATCCCTGCATCCACTGG	NA	False	NA	NA	False	NA	NA	NA	81856525	81856968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81856500_81857000
ES_00005680	chr10	+	2304	3	FSM	ENSMUSG00000061371.8	ENSMUST00000209622.2	2284	3	-20	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	19	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTATCTATATTATCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	81883956	81897420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81884064_81894203_81894331_81895350
ES_00005681	chr10	+	742	5	NNC	ENSMUSG00000112160.2	novel	2726	4	NA	NA	-24	11708	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	9.08295106229247	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATTGTTTCCTTGCCTTC	NA	False	NA	8	True	NA	NA	NA	81919162	81958758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572_81944605_81958320
ES_00005682	chr10	+	2622	4	FSM	ENSMUSG00000078435.6	ENSMUST00000201286.4	2634	4	7	5	7	-5	multi-exon	FALSE	canonical	1	5	junction_2	1.24721912892465	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCAAGAAGTTTCTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	81963853	81988894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81963933_81974086_81974214_81986050_81986112_81986539
ES_00005685	chr10	+	4661	1	FSM	ENSMUSG00000073427.5	ENSMUST00000165906.2	2645	1	-2032	16	-2032	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CGAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	82212394	82217055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_82212400_82217100
ES_00005688	chr10	+	2987	10	NIC	ENSMUSG00000034674.19	novel	3502	10	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	344.226023937115	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465729	82486158	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484414
ES_00005693	chr10	+	5014	33	FSM	ENSMUSG00000034560.7	ENSMUST00000217842.2	5014	33	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_5	77.5305383381284	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGAGTGGAGATACAGT	NA	False	NA	NA	False	NA	NA	NA	83379615	83431298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386750_83386813_83390597_83390681_83391436_83391480_83391864_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
ES_00005695	chr10	+	1124	6	NIC	ENSMUSG00000087651.4	novel	1194	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	34.6098251945889	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTTCTTAATTATTT	NA	False	NA	6	True	ATTAAA	-19	NA	83558793	83598626	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595461_83595495_83597781
ES_00005697	chr10	+	450	2	Genic_Genomic	ENSMUSG00000111875.2	novel	459	1	NA	NA	0	51004	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCAGATATATCAGG	NA	False	NA	NA	False	NA	NA	NA	84144749	84196212	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_+_84145184_84196196
ES_00005698	chr10	+	2532	10	FSM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	189	4	-82	-4	multi-exon	FALSE	canonical	2	4	junction_1	3.1308895119123	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGTAATCTTTTCATT	NA	False	NA	NA	False	AATAAA	-18	NA	84412678	84450219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
ES_00005699	chr10	+	1412	12	FSM	ENSMUSG00000034453.9	ENSMUST00000213263.2	1387	12	-1	-24	0	24	multi-exon	FALSE	canonical	3	154	junction_10	24.1866023975504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTCTTACTGAGAA	NA	False	NA	NA	False	AATAGA	-45	NA	84458155	84492079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808
ES_00005701	chr10	+	2021	4	NNC	ENSMUSG00000060935.7	novel	1200	4	NA	NA	-41	53438	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	85.985786939212	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTGAACTCAGAAATCT	NA	False	NA	NA	False	NA	NA	NA	84938565	85009920	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_84938862_84946662_84946730_84950271_84951851_85009841
ES_00005702	chr10	+	214	2	NNC	ENSMUSG00000085111.4	novel	483	3	NA	NA	249	385	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGTAAACTGATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	85764886	85765945	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_85764939_85765783
ES_00005703	chr10	+	1807	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	-8	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ES_00005705	chr10	+	915	1	FSM	ENSMUSG00000112222.2	ENSMUST00000219550.2	915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGAGCTTTCAGTGATGC	NA	False	NA	NA	False	ATTAAA	-16	NA	87802708	87803623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_87802700_87803600
ES_00005706	chr10	+	1583	1	FSM	ENSMUSG00000112932.2	ENSMUST00000220444.2	1627	1	0	44	0	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTCAAGACCACATTGG	812	False	NA	NA	False	NA	NA	NA	87924059	87925642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_87924100_87925600
ES_00005708	chr10	+	1856	8	FSM	ENSMUSG00000035311.17	ENSMUST00000141343.2	1856	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	80.396974255178	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGTCCGAGCCGGG	NA	False	NA	NA	False	NA	NA	NA	88269222	88276724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88276483
ES_00005710	chr10	+	6478	20	NNC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	39.3855155681006	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTTTGTCCGATTGGTT	NA	False	NA	21	True	TATAAA	-32	NA	89580861	89655733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644704_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ES_00005713	chr10	+	629	2	FSM	ENSMUSG00000015889.9	ENSMUST00000215224.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACCTGGGGAATACGTGA	NA	False	NA	NA	False	NA	NA	NA	93289312	93296089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_93289531_93295678
ES_00005714	chr10	+	1945	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTAAAGTGTCATTTTT	NA	False	NA	20	True	AATACA	-19	NA	93289272	93320735	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
ES_00005718	chr10	+	2868	7	NIC	ENSMUSG00000020020.9	novel	2449	6	NA	NA	-20	325	intron_retention	FALSE	canonical	3	11	junction_1	4.57043640026736	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTCCAGTCACTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	93669659	93694275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_93669754_93679839_93679914_93681472_93682977_93686011_93686208_93688571_93688681_93691975_93692182_93693590
ES_00005719	chr10	+	252	2	NNC	ENSMUSG00000112477.2	novel	1029	2	NA	NA	652	-5500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCTTTTCTTACACTGT	NA	False	NA	NA	False	NA	NA	NA	94457053	94479019	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_94457087_94478800
ES_00005720	chr10	+	711	2	FSM	ENSMUSG00000074781.6	ENSMUST00000219381.2	699	2	-12	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGGTCCCTTACCATTT	NA	False	NA	NA	False	NA	NA	NA	95351006	95377684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_95351100_95377066
ES_00005721	chr10	+	330	2	FSM	ENSMUSG00000074781.6	ENSMUST00000217757.2	330	2	0	0	0	0	multi-exon	FALSE	canonical	3	1883	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTTCTCCTGTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	95377374	95378197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_95377641_95378133
ES_00005723	chr10	+	3039	2	NIC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-1021	625	intron_retention	FALSE	canonical	3	133	junction_1	0	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAATATCATTCTCCAC	NA	False	NA	32	True	AATAAA	-25	NA	95728283	95733744	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_95730152_95732573
ES_00005724	chr10	+	1695	4	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-245	618	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	59.0987873536054	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729059	95733737	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_95729296_95729415_95729528_95729968_95730152_95732573
ES_00005725	chr10	+	416	2	FSM	ENSMUSG00000036499.10	ENSMUST00000219207.2	1839	2	0	1423	0	-1423	multi-exon	FALSE	canonical	3	44	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATGAAAATTTAATAGAGA	2679	False	NA	NA	False	TATAAA	-35	NA	95776511	95809940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_95776835_95809847
ES_00005726	chr10	+	1249	4	FSM	ENSMUSG00000019943.11	ENSMUST00000219557.2	1249	4	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	7.11805216802087	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATTGCCCAAGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	98750267	98822984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752
ES_00005728	chr10	+	3495	11	FSM	ENSMUSG00000019952.16	ENSMUST00000159990.2	3449	11	-46	0	21	0	multi-exon	FALSE	canonical	3	64	junction_10	9.48946784598589	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGTCTTCTCTTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	98942918	99033936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
ES_00005730	chr10	+	913	1	FSM	ENSMUSG00000094314.4	ENSMUST00000186197.3	914	1	17	-16	17	16	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGATGCCTAGACT	NA	False	NA	NA	False	NA	NA	NA	100171554	100172467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100171600_100172500
ES_00005731	chr10	+	854	1	FSM	ENSMUSG00000091101.3	ENSMUST00000168769.3	927	1	1	72	1	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACGCCCAGCTGGAT	NA	False	NA	NA	False	NA	NA	NA	100176698	100177552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100176700_100177600
ES_00005732	chr10	+	910	1	FSM	ENSMUSG00000112931.2	ENSMUST00000218922.2	910	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGGGACCCAGAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	100181833	100182743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100181800_100182700
ES_00005733	chr10	+	202	1	FSM	ENSMUSG00000019888.17	ENSMUST00000218984.2	3543	1	2437	904	8	-904	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTCTGTGTGAGTCTTA	8469	False	NA	NA	False	NA	NA	NA	102210303	102210505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_102210300_102210500
ES_00005734	chr10	+	3904	12	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-206	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	31.6193789307593	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203437	103255236	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ES_00005735	chr10	+	2368	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	0	-853	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAATTGATTTTAATATA	NA	False	NA	NA	False	AATAAA	-20	NA	103203692	103232166	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
ES_00005736	chr10	+	2373	3	FSM	ENSMUSG00000019894.15	ENSMUST00000219936.2	2395	3	0	22	0	-22	multi-exon	FALSE	canonical	3	109	junction_1	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGACCAGATATTAAGAAT	NA	False	NA	NA	False	AATAAA	-13	NA	103229310	103232997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_103229410_103229761_103229889_103230850
ES_00005737	chr10	+	1258	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181615.8	1258	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104029902	104032383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_104030009_104031231
ES_00005738	chr10	+	6008	24	NIC	ENSMUSG00000019907.11	novel	3403	26	NA	NA	-187	1	combination_of_known_junctions	TRUE	canonical	3	31	junction_12	49.5296210851579	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGCACTTTGTGTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	107997866	108115846	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098170_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
ES_00005739	chr10	+	1133	2	Intergenic	novelGene_390	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	205	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTATGACTCTGTTTT	NA	False	NA	NA	False	AAAAAG	-13	NA	108098638	108117134	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_108099607_108116969
ES_00005740	chr10	+	4491	5	NIC	ENSMUSG00000019907.11	novel	5066	11	NA	NA	93	-9	intron_retention	FALSE	canonical	3	227	junction_3	9.87420882906575	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTGGATTTCCAGCAC	NA	False	NA	NA	False	AGTAAA	-10	NA	108103050	108115836	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
ES_00005741	chr10	+	812	1	FSM	ENSMUSG00000065653.3	ENSMUST00000083719.3	134	1	13	-691	13	691	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTCAGCCCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	108199538	108200350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_108199500_108200400
ES_00005745	chr10	+	3137	1	FSM	ENSMUSG00000112822.2	ENSMUST00000218674.2	3135	1	-151	149	-151	-149	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAATCAAATTTGGCT	NA	False	NA	NA	False	NA	NA	NA	115230503	115233640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_115230500_115233600
ES_00005747	chr10	+	493	4	Intergenic	novelGene_399	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	4.18993502999218	66	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATACATTCATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	117060432	117063873	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_117060473_117062495_117062653_117063449_117063496_117063623
ES_00005750	chr10	+	967	2	Genic_Genomic	ENSMUSG00000112252.2_ENSMUSG00000112614.2	novel	2410	1	NA	NA	412	-1030	multi-exon	TRUE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCCCTCTTACGTGAAGC	NA	False	NA	NA	False	NA	NA	NA	118089575	118095971	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_+_118090305_118095733
ES_00005751	chr10	+	767	4	FSM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	586.90373997786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAAACTTTGTTTTCAGT	NA	False	NA	-91	True	NA	NA	NA	120063006	120067469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_120063029_120063878_120064109_120066314_120066468_120067107
ES_00005752	chr10	+	1463	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	477.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120063090	120067976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_120063455_120063878_120064109_120067107
ES_00005754	chr10	+	2901	10	Intergenic	novelGene_409	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_7	28.7947183085568	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGGAAGAATGGAGGCA	NA	False	NA	NA	False	AAAACA	-19	NA	120359230	120374985	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370312_120372451_120373621_120373690_120373794_120374077
ES_00005757	chr10	+	705	7	FSM	ENSMUSG00000034613.13	ENSMUST00000161065.8	750	7	45	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	3.24893144826965	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGATATCGAATGACCGACT	NA	False	NA	NA	False	NA	NA	NA	122647351	122777193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
ES_00005759	chr10	+	838	1	FSM	ENSMUSG00000112364.2	ENSMUST00000219657.2	942	1	105	-1	105	1	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGGAACTGGATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	124359447	124360285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_124359400_124360300
ES_00005760	chr10	+	4950	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	-180	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	131.579764306674	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126814405	126835838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835300_126835346
ES_00005761	chr10	+	4134	3	FSM	ENSMUSG00000078429.10	ENSMUST00000105255.3	4136	3	2	0	2	0	multi-exon	FALSE	canonical	3	423	junction_2	8	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGAGCTGCTTTTGCTT	NA	False	NA	19	True	AATAAA	-25	NA	126831483	126835844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126831817_126831894_126832081_126832229
ES_00005762	chr10	+	247	2	FSM	ENSMUSG00000006732.15	ENSMUST00000135655.2	1057	2	-10	820	-10	0	multi-exon	FALSE	canonical	3	433	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTTGCAGACATAGGCT	NA	False	NA	NA	False	AAGAAA	-20	NA	126877815	126879051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126877940_126878928
ES_00005763	chr10	+	950	7	FSM	ENSMUSG00000006728.13	ENSMUST00000133115.8	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1981.93566999537	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGCCAGTGCAGTCAGTG	NA	False	NA	NA	False	NA	NA	NA	126899472	126902046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126899629_126900070_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969
ES_00005764	chr10	+	752	3	FSM	ENSMUSG00000006728.13	ENSMUST00000123456.2	752	3	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_1	600	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGATCAGGTTGGCCTTGA	NA	False	NA	-48	True	NA	NA	NA	126900166	126901184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126900590_126900703_126900872_126901023
ES_00005766	chr10	+	2961	10	NIC	ENSMUSG00000006731.11	novel	2395	11	NA	NA	-82	0	intron_retention	FALSE	canonical	3	39	junction_5	12.6383699527165	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	272	False	NA	8	True	GGGGCT	-23	NA	127001011	127008199	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ES_00005768	chr10	+	1693	12	ISM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	1913	0	1346	0	3prime_fragment	FALSE	canonical	3	51	junction_1	7.05117070169648	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161537	127165812	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ES_00005769	chr10	+	201	2	Antisense	novelGene_ENSMUSG00000025405.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCAACTGTTCTTCCAG	2588	False	NA	NA	False	NA	NA	NA	127197857	127200330	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_127197906_127200177
ES_00005770	chr10	+	1429	14	ISM	ENSMUSG00000025404.16	ENSMUST00000166820.8	4281	27	186	34048	49	0	5prime_fragment	FALSE	canonical	3	23	junction_13	49.2785825508897	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGGATTCTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	127216716	127301181	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_127216806_127226179_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127300999
ES_00005772	chr10	+	462	4	FSM	ENSMUSG00000025404.16	ENSMUST00000168079.2	462	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	106.684373530314	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGCCTGGGGGTCCTGC	NA	False	NA	NA	False	NA	NA	NA	127321350	127331012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127321440_127323643_127323745_127328458_127328608_127330889
ES_00005773	chr10	+	2809	21	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	2442	9	2442	-4	3prime_fragment	FALSE	canonical	2	6	junction_3	3.278719262151	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGATACATATGCGTAT	NA	False	NA	13	True	AATAAA	-19	NA	127543480	127556800	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380_127554516_127555119_127555227_127555501_127555635_127555736_127555890_127556021_127556150_127556461
ES_00005774	chr10	+	6745	9	FSM	ENSMUSG00000061315.15	ENSMUST00000092048.13	6745	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4849.66586477873	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTGCTAGATCTTTTCC	4972	False	NA	4	True	AATAAA	-28	NA	127871503	127884506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127871553_127872357_127872430_127875039_127880956_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
ES_00005775	chr10	+	1288	2	FSM	ENSMUSG00000025393.13	ENSMUST00000139295.3	1288	2	0	0	0	0	multi-exon	FALSE	canonical	3	9425	junction_1	0	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTTCTCTCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	127920301	127921818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127921082_127921310
ES_00005776	chr10	+	8523	30	NNC	ENSMUSG00000040054.18	novel	8372	30	NA	NA	-95	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	137.199179095037	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	0	True	AATAAA	-20	NA	127928556	127965172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_127928720_127932248_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961889_127962111_127962194_127962339_127962456
ES_00005778	chr10	+	4406	29	NNC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	77.317395143892	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6638	False	NA	18	True	AATAAA	-18	NA	128067980	128088808	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_128068045_128075702_128075867_128076008_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ES_00005780	chr10	+	4405	25	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	20.4530288438874	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATACTGTGAGAGTGTG	2319	False	NA	NA	False	AATAAA	-20	NA	128106385	128128718	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126534_128126581_128126900_128127096
ES_00005783	chr10	+	3477	2	FSM	ENSMUSG00000005682.10	ENSMUST00000219801.2	3410	2	-48	-19	-7	-1	multi-exon	FALSE	canonical	3	271	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCACCCAAAAACTTGG	NA	False	NA	NA	False	NA	NA	NA	128139196	128143296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128139341_128139963
ES_00005784	chr10	+	201	2	Intergenic	novelGene_430	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	370	junction_1	0	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAGGGGAAAAGATT	8552	False	NA	NA	False	NA	NA	NA	128263839	128268947	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128263895_128268801
ES_00005786	chr10	+	729	2	Antisense	novelGene_ENSMUSG00000039824.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	2735	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTTACAGGAGCAAATT	7136	False	NA	NA	False	NA	NA	NA	128329876	128338830	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_128330053_128338277
ES_00005788	chr10	+	767	2	Antisense	novelGene_ENSMUSG00000118400.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATTATTGACTTGGGAA	3203	False	NA	NA	False	AAAAAG	-36	NA	128497543	128527238	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_128497742_128526669
ES_00005789	chr10	+	956	12	FSM	ENSMUSG00000078427.4	ENSMUST00000219512.2	953	12	-3	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1650.06371026512	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTTTTATTAGGT	NA	False	NA	NA	False	AATAAA	-13	NA	128657762	128713493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128657841_128666819_128666854_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ES_00005793	chr10	+	1399	2	Antisense	novelGene_ENSMUSG00000059134.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGCGATTTTAAAACAC	NA	False	NA	NA	False	NA	NA	NA	129713559	129715537	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_129713891_129714469
ES_00005796	chr10	-	218	2	Antisense	novelGene_ENSMUSG00000065371.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAGGAGACCACTTGAA	NA	False	NA	NA	False	NA	NA	NA	4439304	4417106	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_4417133_4439112
ES_00005797	chr10	-	745	1	FSM	ENSMUSG00000087350.2	ENSMUST00000131528.2	730	1	-20	5	-20	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGCCTTGAAGAGTAACA	NA	False	NA	NA	False	NA	NA	NA	7482597	7481852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7481900_7482600
ES_00005800	chr10	-	478	2	NNC	ENSMUSG00000040006.14	novel	353	2	NA	NA	23	33	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATGAAAGCCTGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	7668541	7667150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_7667359_7668271
ES_00005801	chr10	-	352	1	FSM	ENSMUSG00000081497.2	ENSMUST00000117107.2	643	1	95	196	95	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCAAGATGAAGGAGAAGT	NA	False	NA	NA	False	NA	NA	NA	7684427	7684075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7684100_7684400
ES_00005802	chr10	-	2377	2	FSM	ENSMUSG00000015755.17	ENSMUST00000143848.2	703	2	8	-1682	8	6	multi-exon	FALSE	canonical	3	55	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGGCTTGTCTTTGAA	6558	False	NA	0	True	ATTAAA	-23	NA	7786256	7781410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7783342_7785810
ES_00005803	chr10	-	4097	7	NIC	ENSMUSG00000015755.17	novel	4380	7	NA	NA	-8948	6	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	15.9861050777091	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGGCTTGTCTTTGAA	NA	False	NA	0	True	ATTAAA	-23	NA	7808972	7781410	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448_7800637_7808831
ES_00005804	chr10	-	6075	11	ISM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	134622	-2	5333	2	3prime_fragment	FALSE	canonical	2	5	junction_3	2.343074902772	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTCTCTGGTTGTTCC	NA	False	NA	-7	True	AATAAA	-15	NA	8627192	8597980	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_8601525_8603621_8603754_8605091_8606201_8609359_8609474_8615084_8615236_8615937_8616148_8617191_8617362_8618191_8618328_8620251_8620396_8621879_8621955_8626902
ES_00005805	chr10	-	1067	4	FSM	ENSMUSG00000015305.7	ENSMUST00000213032.2	1078	4	19	-8	19	8	multi-exon	FALSE	canonical	3	6	junction_3	1.24721912892465	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAACAAAAC	820	False	NA	NA	False	NA	NA	NA	8761777	8689477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_8690055_8690170_8690222_8726106_8726236_8761467
ES_00005806	chr10	-	9233	7	FSM	ENSMUSG00000019790.18	ENSMUST00000136259.8	3791	7	-1118	-4324	-1118	-710	multi-exon	FALSE	canonical	3	16	junction_5	6.10100173924104	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCTGACAGACTTAGAT	NA	False	NA	NA	False	NA	NA	NA	9657190	9632000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764
ES_00005807	chr10	-	13470	75	FSM	ENSMUSG00000019820.12	ENSMUST00000218635.2	11801	75	-229	-1440	-229	248	multi-exon	TRUE	canonical	2	9	junction_73	46.2904729827861	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTAAAGCCCATTGGGC	NA	False	NA	NA	False	NA	NA	NA	12745338	12257683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12496934_12497125_12509687_12509843_12512339_12512546_12516670_12516789_12519146_12519356_12524886_12524963_12528454_12528605_12530442_12530579_12534239_12534416_12536522_12536674_12539109_12539283_12540690_12540883_12542442_12542581_12543243_12543403_12545399_12545571_12545863_12545993_12547494_12547675_12554323_12554495_12556215_12556372_12558020_12558195_12558988_12559118_12560153_12560316_12562075_12562226_12564036_12564172_12566473_12566654_12569107_12569279_12573732_12573889_12574745_12574860_12585709_12585923_12587181_12587328_12588997_12589179_12589876_12590119_12595761_12595850_12596562_12596687_12601954_12602125_12603476_12603657_12604454_12604563_12609642_12609745_12610841_12610962_12612695_12612847_12613828_12614011_12615110_12615315_12619788_12619950_12620975_12621092_12623658_12623832_12625774_12625868_12626208_12626287_12627238_12627332_12641014_12641077_12737311_12737480_12744498
ES_00005809	chr10	-	2511	11	NIC	ENSMUSG00000062866.17	novel	8556	13	NA	NA	21	-175	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	14.8727939540626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCGCACTGTGTTG	NA	False	NA	NA	False	ATTAAA	-33	NA	13350135	13089313	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13142716_13142798_13167538_13167707_13349799
ES_00005810	chr10	-	584	3	FSM	ENSMUSG00000019868.17	ENSMUST00000156398.2	600	3	16	0	16	0	multi-exon	FALSE	canonical	3	719	junction_1	48.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTAACAGTCCGTTACAC	2303	False	NA	NA	False	NA	NA	NA	14543989	14531406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_14531590_14536809_14536897_14543675
ES_00005812	chr10	-	287	1	FSM	ENSMUSG00000111313.2	ENSMUST00000213578.2	1121	1	793	41	793	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGTGTTCTCTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	18212196	18211909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18211900_18212200
ES_00005813	chr10	-	968	4	FSM	ENSMUSG00000019853.7	ENSMUST00000213153.2	968	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.4988888395018	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGCCTCCGCTGTT	NA	False	NA	NA	False	AGTAAA	-22	NA	18421635	18416505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18417081_18420130_18420194_18420825_18420962_18421441
ES_00005814	chr10	-	263	2	Intergenic	novelGene_243	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTAACCTAGCAACCAT	NA	False	NA	NA	False	NA	NA	NA	19443346	19393394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_19393536_19443224
ES_00005815	chr10	-	254	1	FSM	ENSMUSG00000019982.16	ENSMUST00000216985.2	3233	1	322	2657	322	708	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAGAATTGCTAAGGC	NA	False	NA	NA	False	NA	NA	NA	21022338	21022084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_21022100_21022300
ES_00005816	chr10	-	898	2	NNC	ENSMUSG00000090535.2	novel	732	5	NA	NA	6205	652	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCTGTCCCACCTGGGA	NA	False	NA	NA	False	NA	NA	NA	21918206	21915947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_21916731_21918091
ES_00005818	chr10	-	208	1	FSM	ENSMUSG00000097295.2	ENSMUST00000181542.2	626	1	-40	458	-40	-458	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGGGAATTTTTAAGATA	9527	False	NA	NA	False	NA	NA	NA	22139306	22139098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_22139100_22139300
ES_00005819	chr10	-	2026	6	NNC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	20995	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	50.2736511504784	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTCTTCTTTTCTTTCC	NA	False	NA	0	True	AATAAA	-19	NA	25151003	25044987	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25150849
ES_00005820	chr10	-	2300	8	NNC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	1493	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	45.0197235687213	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTCTTCTTTTCTTTCC	NA	False	NA	0	True	AATAAA	-19	NA	25170505	25044987	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25170358
ES_00005821	chr10	-	2274	9	NNC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	non_canonical	3	61	junction_1	23.3154321212368	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCTTTTCTTTCCTCTG	NA	False	NA	4	True	AATAAA	-23	NA	25172971	25044983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_25045562_25045590_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
ES_00005822	chr10	-	269	1	FSM	ENSMUSG00002076559.1	ENSMUST00020181774.1	253	1	-144	128	-144	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCACACCCCTGCTTG	NA	False	NA	NA	False	NA	NA	NA	25157894	25157625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_25157600_25157900
ES_00005825	chr10	-	4039	4	FSM	ENSMUSG00000038876.13	ENSMUST00000037548.11	4402	4	365	-2	-30	0	multi-exon	FALSE	canonical	3	17	junction_3	93.3821301011185	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGTTTCAACTTTTC	NA	False	NA	2	True	AATAAA	-20	NA	29238073	29220171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237959
ES_00005826	chr10	-	1576	11	FSM	ENSMUSG00000019792.9	ENSMUST00000215595.2	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	70.5592658691968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476691	30410710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
ES_00005829	chr10	-	880	1	FSM	ENSMUSG00000110744.2	ENSMUST00000214944.2	1415	1	532	3	532	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAAAGTTGCATTGTCT	NA	False	NA	NA	False	AATAAA	-9	NA	30657735	30656855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_30656900_30657700
ES_00005831	chr10	-	244	1	FSM	ENSMUSG00000110758.2	ENSMUST00000214055.2	2562	1	-208	2526	-208	-2526	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCCGTATGATTAGTG	NA	False	NA	NA	False	NA	NA	NA	31302294	31302050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_31302000_31302300
ES_00005832	chr10	-	2525	6	FSM	ENSMUSG00000019785.15	ENSMUST00000019920.13	2717	6	192	0	42	0	multi-exon	FALSE	canonical	0	0	junction_4	2.82842712474619	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAGATGTCATGGAAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	33500573	33388281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_33389343_33404318_33404540_33419377_33419489_33471739_33471915_33498539_33499055_33500131
ES_00005833	chr10	-	2550	11	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	212	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	21.6185105869947	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTGGTTTCTTGTCT	NA	False	NA	-3	True	AATAAA	-18	NA	33826979	33795139	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33826478
ES_00005835	chr10	-	686	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-110	693	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	34.5671648951558	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109637	34106209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_34106388_34106902_34107071_34107314_34107420_34109402
ES_00005836	chr10	-	425	4	FSM	ENSMUSG00000087177.8	ENSMUST00000133302.8	438	4	13	0	-6	0	multi-exon	FALSE	canonical	2	2	junction_2	8.65383665716478	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTGTGGCCTGGAC	5676	False	NA	NA	False	NA	NA	NA	39607984	39498693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_39498724_39508945_39509013_39557468_39557546_39607733
ES_00005838	chr10	-	450	3	ISM	ENSMUSG00000096687.9	ENSMUST00000178563.3	3528	4	112	4052	43	758	5prime_fragment	FALSE	canonical	2	5	junction_2	6	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCATGATGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	39775122	39770060	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_39770129_39770767_39770937_39774909
ES_00005840	chr10	-	702	6	NNC	ENSMUSG00000019837.9	novel	2526	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_5	261.529807096629	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	8586	False	NA	-16	True	AAAACA	-21	NA	40133667	40125519	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133287_40133574
ES_00005841	chr10	-	695	3	FSM	ENSMUSG00000075232.7	ENSMUST00000216993.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_2	12.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTTTGTTTTGTAATAT	NA	False	NA	NA	False	GGGGCT	-6	NA	40178053	40170004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_40170304_40170712_40170800_40177744
ES_00005842	chr10	-	216	2	Intergenic	novelGene_276	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCCTTTGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	41281006	41263384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_41263418_41280823
ES_00005844	chr10	-	3504	10	NNC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-5622	1194	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_9	71.4082334361321	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGGCTGGCTTTTAACT	5890	False	NA	NA	False	AATAAA	-18	NA	41628256	41593641	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
ES_00005845	chr10	-	2229	11	NIC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_10	60.7736785129878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGAAATATTCTGGGA	129	False	NA	5	True	AATAAA	-26	NA	41685864	41594835	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685783
ES_00005846	chr10	-	2934	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	-168	-1572	-168	1572	mono-exon	FALSE	NA	NA	NA	NA	NA	303	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATAAAACTTTTATGATT	2294	False	NA	NA	False	ATTAAA	-32	NA	41931470	41928536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_41928500_41931500
ES_00005847	chr10	-	870	5	NNC	ENSMUSG00000019797.12	novel	860	4	NA	NA	0	32819	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.157354207342	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTAAAACTGTACACG	NA	False	NA	NA	False	NA	NA	NA	43416964	43368309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_43368336_43401144_43401405_43406593_43406667_43408671_43409154_43416935
ES_00005852	chr10	-	435	1	FSM	ENSMUSG00000089800.2	ENSMUST00000159750.2	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGATGCTGGGTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	52261189	52260754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_52260800_52261200
ES_00005853	chr10	-	1833	1	FSM	ENSMUSG00000049576.7	ENSMUST00000180673.2	3420	1	1529	58	1028	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTAGACTCTTTCT	NA	False	NA	NA	False	AATATA	-5	NA	52420306	52418473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_52418500_52420300
ES_00005855	chr10	-	1907	1	FSM	ENSMUSG00000112734.2	ENSMUST00000220401.2	1794	1	-190	77	-190	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTGAGTTTCAGCCA	NA	False	NA	NA	False	NA	NA	NA	53220520	53218613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_53218600_53220500
ES_00005856	chr10	-	3513	7	FSM	ENSMUSG00000058298.11	ENSMUST00000220007.2	3513	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	10.060925515191	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATGTGGTTTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	53473744	53412893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_53414864_53417033_53417180_53417632_53417716_53423610_53423703_53424592_53424796_53439378_53439554_53472900
ES_00005857	chr10	-	1384	5	ISM	ENSMUSG00000058298.11	ENSMUST00000219838.3	4132	8	413	6852	-67	-6852	internal_fragment	FALSE	canonical	3	32	junction_1	6.12372435695795	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGCATGTGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	53506122	53491785	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
ES_00005858	chr10	-	1188	3	FSM	ENSMUSG00000019856.15	ENSMUST00000170839.2	1315	3	0	127	0	-127	multi-exon	FALSE	canonical	2	5	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTCTACCCATAGCTTG	4684	False	NA	NA	False	NA	NA	NA	53627005	53573219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_53573356_53574584_53575440_53626808
ES_00005859	chr10	-	7241	33	FSM	ENSMUSG00000038122.10	ENSMUST00000099739.5	7240	33	0	-1	0	1	multi-exon	TRUE	non_canonical	1	5	junction_4	4.26639759486853	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTGTGAGAACATTATT	NA	False	NA	NA	False	AATAAA	-17	NA	56104785	55890387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_55893801_55903994_55904184_55916234_55916376_55924958_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
ES_00005860	chr10	-	4195	30	FSM	ENSMUSG00000038122.10	ENSMUST00000219385.2	4192	30	0	-3	0	3	multi-exon	FALSE	non_canonical	1	5	junction_1	4.33496417374282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCTTGATCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	56104785	55924261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
ES_00005863	chr10	-	2394	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	154	-16	154	16	multi-exon	FALSE	canonical	3	22	junction_1	10.8639169436269	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAATGTGTTGAAATTGC	NA	False	NA	-13	True	AATAAA	-31	NA	59057515	58999925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
ES_00005864	chr10	-	220	2	Intergenic	novelGene_294	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAAGAAAAAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	59416248	59309555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_59309584_59416056
ES_00005865	chr10	-	478	1	FSM	ENSMUSG00000112673.2	ENSMUST00000219498.2	462	1	12	-28	12	28	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59707492	59707014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_59707000_59707500
ES_00005866	chr10	-	2761	1	Genic_Genomic	ENSMUSG00000020099.9	novel	NA	NA	NA	NA	55297	9	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTTCTCGGTGTCTT	NA	False	NA	NA	False	ATTAAA	-24	NA	60601123	60598362	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_-_60598400_60601100
ES_00005872	chr10	-	200	1	FSM	ENSMUSG00000112710.2	ENSMUST00000219782.2	344	1	-85	229	-85	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGATGATGGATAAACATGGG	NA	False	NA	NA	False	NA	NA	NA	61346449	61346249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61346200_61346400
ES_00005873	chr10	-	1963	34	FSM	ENSMUSG00000058806.16	ENSMUST00000051826.14	2407	34	0	444	0	-315	multi-exon	FALSE	canonical	0	0	junction_31	7.13403101554529	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTGAGCCCTCGTGC	NA	False	NA	NA	False	NA	NA	NA	61813900	61684954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61744460_61744497_61747485_61747513_61755867_61755876_61797067_61797138_61813491
ES_00005874	chr10	-	1493	4	FSM	ENSMUSG00000020083.14	ENSMUST00000124615.8	1493	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	54.9322815433289	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946747	61943988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946376
ES_00005875	chr10	-	3144	9	NNC	ENSMUSG00000037031.11	novel	3638	8	NA	NA	0	44077	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	85.3133012782884	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAACCTCATATAAATAA	4876	False	NA	NA	False	NA	NA	NA	62067030	61977097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_61977209_62021779_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
ES_00005876	chr10	-	526	1	FSM	ENSMUSG00000037031.11	ENSMUST00000220143.2	3569	1	2443	600	2443	-600	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAGACTCTCAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	62035113	62034587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62034600_62035100
ES_00005878	chr10	-	1507	6	ISM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	27047	0	4917	0	3prime_fragment	TRUE	canonical	2	2	junction_4	5.13809303146605	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAGGTATTAAGCTTTC	-3	True	NA	NA	False	AATAAA	-22	NA	62231223	62218915	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_62219702_62221456_62221691_62227089_62227246_62229465_62229650_62230933_62231034_62231176
ES_00005879	chr10	-	2519	15	FSM	ENSMUSG00000020079.16	ENSMUST00000162023.2	2519	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_10	90.2367916729566	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACTTATTATAGCCTT	NA	False	NA	49	True	AGTAAA	-16	NA	62285462	62265033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279157_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ES_00005882	chr10	-	1345	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6267	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	4.10960933531265	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGTGGCTATGTGACATG	NA	False	NA	-3	True	AATAAA	-20	NA	62350143	62330207	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349816
ES_00005883	chr10	-	410	2	FSM	ENSMUSG00000020075.9	ENSMUST00000218393.2	480	2	70	0	70	0	multi-exon	FALSE	canonical	3	654	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTGGTGGCAACCAATG	NA	False	NA	NA	False	NA	NA	NA	62425886	62424517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62424598_62425556
ES_00005884	chr10	-	3842	25	NNC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	107.384167245456	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628049	62580240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586792_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ES_00005885	chr10	-	4007	25	NNC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	118.508672912811	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628128	62580240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586792_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
ES_00005886	chr10	-	608	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	11	-1613	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	144.804696056447	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62628024	62617857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ES_00005887	chr10	-	2327	9	NNC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	0	263	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	176.492917704932	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCACAAGCACTTCAAGC	5828	False	NA	NA	False	NA	NA	NA	62859626	62850179	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62855171_62855307_62859416
ES_00005888	chr10	-	1192	8	NIC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	22	junction_4	172.168877701458	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTGATGTTGCTACTT	5781	False	NA	-8	True	AATAAA	-13	NA	62859673	62851208	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853302_62853390_62853819_62854005_62855171_62855307_62859498
ES_00005890	chr10	-	509	3	FSM	ENSMUSG00000087030.2	ENSMUST00000155982.2	538	3	27	2	27	-2	multi-exon	FALSE	canonical	0	0	junction_1	1	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTCCTGTCTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	62893219	62891383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62891640_62892426_62892599_62893138
ES_00005894	chr10	-	378	3	FSM	ENSMUSG00000019942.14	ENSMUST00000123458.2	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	2242	junction_1	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGGCCAGAAGTCGAGT	NA	False	NA	NA	False	NA	NA	NA	69178559	69176428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_69176453_69176544_69176709_69178369
ES_00005896	chr10	-	201	2	Antisense	novelGene_ENSMUSG00000053830.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACTCTTTCATACTGAT	NA	False	NA	NA	False	NA	NA	NA	72163278	72132999	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_72133175_72163252
ES_00005900	chr10	-	2859	6	FSM	ENSMUSG00000033416.16	ENSMUST00000118936.8	2843	6	0	-16	0	16	multi-exon	FALSE	canonical	0	0	junction_5	31.7616120497685	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCTTGTCGTCATGAA	NA	False	NA	3	True	AATAAA	-27	NA	75353806	75342642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75353693
ES_00005901	chr10	-	288	1	Intergenic	novelGene_331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACATTTTTGTGCCTAC	NA	False	NA	NA	False	NA	NA	NA	75454748	75454460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_75454500_75454700
ES_00005907	chr10	-	642	2	FSM	ENSMUSG00000001666.9	ENSMUST00000172820.2	574	2	-63	-5	-63	5	multi-exon	FALSE	canonical	3	486	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTGCTTCTGTAACCC	NA	False	NA	1	True	AATAAA	-26	NA	75608931	75607058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75607341_75608571
ES_00005910	chr10	-	1221	7	FSM	ENSMUSG00000050157.7	ENSMUST00000059658.6	1221	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	10.6991692304694	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAATTATGTCTCCTGT	4916	False	NA	NA	False	AGTAAA	-42	NA	75776506	75773556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775553_75775673_75775764_75775852_75776227_75776255_75776397
ES_00005911	chr10	-	237	2	Antisense	novelGene_ENSMUSG00000082619.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATTTATTTATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75806365	75792527	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_75792712_75806312
ES_00005912	chr10	-	6551	37	FSM	ENSMUSG00000020231.16	ENSMUST00000160048.8	6551	37	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_35	8.00038579316686	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACATTCTTTACATGTCT	NA	False	NA	NA	False	AATAAA	-25	NA	76181125	76098569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366_76108538_76108868_76109038_76109982_76110114_76110822_76110933_76112162_76112275_76112417_76112540_76114321_76114446_76115539_76115621_76115690_76115801_76116509_76116712_76118346_76118462_76121359_76121488_76122195_76122277_76123146_76123284_76126841_76126982_76128145_76128261_76130327_76130448_76131900_76131995_76132186_76132252_76133588_76133692_76134086_76134197_76134503_76134628_76135736_76135848_76138037_76138130_76140849_76141048_76142906_76143027_76149009_76149139_76153700_76153929_76155300_76155421_76163535_76163608_76180940
ES_00005913	chr10	-	9979	41	NNC	ENSMUSG00000001151.11	novel	9331	42	NA	NA	-361	10	intron_retention	FALSE	canonical	3	21	junction_9	51.9574284871759	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCATTCTGTAACTCTT	NA	False	NA	-6	True	AATAAA	-28	NA	76278981	76187086	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210453_76211135_76215738_76215890_76215996_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254404_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ES_00005915	chr10	-	6583	12	FSM	ENSMUSG00000020262.16	ENSMUST00000126073.8	6583	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	12.8352561973999	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATGGACATTTTCCTT	NA	False	NA	NA	False	AATAAA	-22	NA	77254061	77126560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161452_77161526_77161699_77161775_77195400_77195570_77253928
ES_00005916	chr10	-	6583	11	FSM	ENSMUSG00000020262.16	ENSMUST00000098374.9	6584	11	0	1	0	0	multi-exon	FALSE	canonical	2	3	junction_4	12.5554768925756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATGGACATTTTCCTT	NA	False	NA	NA	False	AATAAA	-22	NA	77254104	77126560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148181_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
ES_00005917	chr10	-	286	2	Antisense	novelGene_ENSMUSG00000069581.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	5	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCGGAGCAGAGAGGTC	2619	False	NA	NA	False	AATAAA	-39	NA	77566055	77565682	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_77565749_77565835
ES_00005919	chr10	-	5039	23	FSM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	8	0	8	0	multi-exon	FALSE	canonical	2	6	junction_11	3.08823413662964	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGTATTTTTGTATATA	NA	False	NA	3	True	ATTAAA	-19	NA	78080467	78022558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78023929_78024589_78024785_78029192_78029371_78032121_78032293_78033571_78033699_78034877_78034979_78036451_78036682_78037265_78037425_78038713_78038856_78039714_78040227_78043267_78043381_78043725_78043867_78045217_78045310_78046211_78046289_78046597_78046713_78047309_78047457_78050401_78050650_78052983_78053096_78056022_78056219_78058497_78058695_78064612_78064749_78067287_78067370_78080269
ES_00005920	chr10	-	2000	11	NNC	ENSMUSG00000001211.16	novel	3681	11	NA	NA	48	466	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_10	150.89599066907	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTTTTGTCCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	78187998	78108978	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78187866
ES_00005922	chr10	-	1789	7	NNC	ENSMUSG00000042570.15	novel	2562	14	NA	NA	0	43121	intron_retention	FALSE	non_canonical	0	0	junction_1	81.4159416549091	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGGAACTAGGTGGTCGA	NA	False	NA	NA	False	NA	NA	NA	79380604	79332957	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79332992_79376078_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522
ES_00005926	chr10	-	1593	10	NNC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	0	13582	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.954735689317	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAACAAACAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	79602744	79580766	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79580792_79594377_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
ES_00005927	chr10	-	1559	9	NNC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_2	331.259315906738	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCCCATGGCTTGGCG	NA	False	NA	-9	True	AATACA	-14	NA	79602739	79594377	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79595071_79596624_79596741_79596826_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
ES_00005928	chr10	-	699	4	FSM	ENSMUSG00000035781.15	ENSMUST00000219358.2	699	4	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	5.24933858267454	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCCCTGTGTTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	79748521	79746618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79746974_79747775_79747995_79748229_79748316_79748482
ES_00005931	chr10	-	1031	8	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	0	53767	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1002.78752302097	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGTAGTAGAGATAGAGA	5660	False	NA	NA	False	NA	NA	NA	79875484	79818015	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79818044_79871782_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ES_00005932	chr10	-	2156	15	FSM	ENSMUSG00000035673.11	ENSMUST00000217876.2	2156	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_14	37.9085903785645	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	5655	False	NA	0	True	AATAAA	-21	NA	79911273	79898249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
ES_00005933	chr10	-	2389	18	ISM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	1678	5424	6	0	internal_fragment	FALSE	canonical	3	133	junction_10	12.4322384803871	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	NA	False	NA	0	True	AATAAA	-21	NA	79938526	79898249	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ES_00005934	chr10	-	1657	5	NNC	ENSMUSG00000035673.11	novel	3772	6	NA	NA	-32	476	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	67.1453646948172	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTGTCTCCATTCTT	NA	False	NA	NA	False	NA	NA	NA	79938564	79915767	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_79916942_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ES_00005935	chr10	-	2688	4	FSM	ENSMUSG00000035673.11	ENSMUST00000217683.2	2601	4	-87	0	-32	0	multi-exon	FALSE	canonical	3	148	junction_1	5.55777733351102	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTGCCATTCAGTC	NA	False	NA	NA	False	AATAGA	-10	NA	79938564	79916243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79918561_79920074_79920149_79922090_79922267_79938443
ES_00005938	chr10	-	1358	2	FSM	ENSMUSG00000048696.12	ENSMUST00000123141.2	1358	2	0	0	0	0	multi-exon	FALSE	non_canonical	2	28	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGCTGAACTGATTTA	NA	False	NA	-99	True	AATAAA	-42	NA	80217821	80216287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80216897_80217072
ES_00005939	chr10	-	1549	6	NIC	ENSMUSG00000035478.15	novel	1662	7	NA	NA	58	-3	intron_retention	FALSE	canonical	3	303	junction_5	389.715485963799	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTGACTTGTCACTGT	NA	False	NA	-7	True	AATAAA	-19	NA	80235198	80228375	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ES_00005941	chr10	-	1478	6	NNC	ENSMUSG00000003346.15	novel	1468	5	NA	NA	0	64153	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	161.300464971432	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAACACTGGCCCCTACT	7815	False	NA	NA	False	NA	NA	NA	80426158	80355334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80355362_80419487_80419898_80419976_80420157_80421441_80421637_80422348_80422865_80426008
ES_00005942	chr10	-	2338	12	FSM	ENSMUSG00000047417.19	ENSMUST00000182260.8	2338	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	107.352281748895	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATTTCATAGTGTGTG	3899	False	NA	-5	True	AATAAA	-14	NA	80383755	80377497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380279_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606
ES_00005943	chr10	-	2467	10	NNC	ENSMUSG00000003344.15	novel	2449	9	NA	NA	0	28854	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.933746614815	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAACGAAACCTGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	80492328	80449596	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80449624_80478459_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ES_00005944	chr10	-	2459	9	NIC	ENSMUSG00000003344.15	novel	2449	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_4	127.904994038544	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGAGTGCTATGTTGTC	NA	False	NA	-5	True	AATAAA	-20	NA	80492326	80478456	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480648_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ES_00005946	chr10	-	772	3	FSM	ENSMUSG00000035278.10	ENSMUST00000218036.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1230	junction_2	7.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80633722	80631932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80632357_80632424_80632657_80633606
ES_00005947	chr10	-	538	3	FSM	ENSMUSG00000035278.10	ENSMUST00000219959.2	537	3	0	-1	0	0	multi-exon	FALSE	canonical	3	211	junction_2	517	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80632651	80631932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80632357_80632424_80632453_80632565
ES_00005948	chr10	-	235	1	Intergenic	novelGene_356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	540	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAGAAAAAAGAAA	8687	False	NA	NA	False	NA	NA	NA	80790189	80789954	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_80790000_80790200
ES_00005949	chr10	-	402	3	FSM	ENSMUSG00000046822.15	ENSMUST00000152177.2	402	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	33	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGCCTTTGGCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	80873084	80869716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80869768_80870751_80870840_80872821
ES_00005950	chr10	-	2371	12	NNC	ENSMUSG00000004934.15	novel	2571	11	NA	NA	0	41577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.036087660696	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTTGCATCAAAACAACAG	NA	False	NA	NA	False	NA	NA	NA	81003548	80947522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80947552_80989119_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ES_00005952	chr10	-	2371	12	NNC	ENSMUSG00000004934.15	novel	2571	11	NA	NA	0	24316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.036087660696	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAAAACAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	81003548	80964783	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80964813_80989119_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ES_00005953	chr10	-	618	4	NNC	ENSMUSG00000034932.5	novel	604	3	NA	NA	0	7691	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	457.123129534653	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAATAAAACCCAATTAAG	3104	False	NA	NA	False	NA	NA	NA	81102758	81092855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81092891_81100557_81100832_81101484_81101642_81102606
ES_00005955	chr10	-	6178	9	NNC	ENSMUSG00000055053.19	novel	6237	9	NA	NA	-533	-6	intron_retention	FALSE	canonical	1	2	junction_8	10.264471491509	402	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTTCTCTTGGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	81267372	81232025	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81267313
ES_00005956	chr10	-	3348	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	5.66557723732532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCCATTA	3912	False	NA	NA	False	AAAAAG	-44	NA	81263007	81234971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
ES_00005957	chr10	-	690	4	FSM	ENSMUSG00000020238.15	ENSMUST00000130400.2	690	4	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_3	7.84573486395988	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGACAGCACCATGTGAAG	NA	False	NA	NA	False	NA	NA	NA	81326102	81324059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81324301_81324382_81324471_81325635_81325955_81326060
ES_00005958	chr10	-	204	1	Intergenic	novelGene_361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAATTTTTGAGGGAG	7635	False	NA	NA	False	NA	NA	NA	81358203	81357999	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_81358000_81358200
ES_00005961	chr10	-	2021	9	NNC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	-799	16	intron_retention	FALSE	canonical	0	0	junction_8	76.4718085309874	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCCGTTTGTGTGTGTGT	8859	False	NA	7	True	AATAAA	-43	NA	81464430	81457602	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305_81463701_81464387
ES_00005962	chr10	-	318	1	FSM	ENSMUSG00000112502.2	ENSMUST00000218136.2	320	1	-131	133	-131	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAGAAGATTGTGCTGA	7517	False	NA	NA	False	AAAAAG	-10	NA	81845765	81845447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81845400_81845800
ES_00005963	chr10	-	542	3	ISM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	2430	0	-2426	5prime_fragment	FALSE	canonical	3	139	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAGGTCAAGAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	82077107	82063113	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_82063426_82063632_82063760_82077004
ES_00005964	chr10	-	1285	5	Intergenic	novelGene_368	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	8	junction_3	3.16227766016838	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTGCCCCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	82453664	82449094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_82449333_82449943_82450061_82451226_82451465_82452292_82452627_82453306
ES_00005968	chr10	-	220	1	Intergenic	novelGene_373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATTATTTAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	84923592	84923372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_84923400_84923600
ES_00005969	chr10	-	2653	2	FSM	ENSMUSG00000050035.8	ENSMUST00000059383.8	3402	2	0	749	0	-749	multi-exon	FALSE	canonical	3	8	junction_1	0	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAATGAGAGTACCCATC	NA	False	NA	NA	False	AGTAAA	-3	NA	84938359	84932899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84935353_84938159
ES_00005970	chr10	-	1860	2	FSM	ENSMUSG00000050035.8	ENSMUST00000216889.2	1860	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGTGAAGCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	84938359	84933844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84935353_84938007
ES_00005971	chr10	-	425	2	FSM	ENSMUSG00000020038.11	ENSMUST00000214805.2	506	2	1	80	1	-80	multi-exon	FALSE	canonical	3	264	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGGAGATCTGGGGGATC	NA	False	NA	NA	False	NA	NA	NA	84987219	84984380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84984663_84987076
ES_00005972	chr10	-	2356	4	FSM	ENSMUSG00000035529.11	ENSMUST00000218743.2	729	4	-184	-1443	-184	2	multi-exon	FALSE	canonical	3	192	junction_3	20.4993224820291	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTCATGATCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	85737963	85727827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567
ES_00005973	chr10	-	4021	12	FSM	ENSMUSG00000035529.11	ENSMUST00000220032.2	3962	12	-57	-2	-57	2	multi-exon	FALSE	canonical	3	39	junction_6	54.6866354713247	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTCATGATCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	85752907	85727827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740135_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752671
ES_00005975	chr10	-	3131	19	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	61	27641	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1122.38033127131	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTATGGAAATGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	86541312	86498431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_86498470_86526703_86527322_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ES_00005976	chr10	-	2975	13	FSM	ENSMUSG00000020048.14	ENSMUST00000129178.8	3222	13	0	247	0	-247	multi-exon	FALSE	canonical	3	2860	junction_10	273.539899080351	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGGCCTAAAACTCGAA	NA	False	NA	NA	False	NA	NA	NA	86537832	86526319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_86526993_86527492_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560
ES_00005979	chr10	-	3206	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	24	0	intron_retention	FALSE	canonical	3	53	junction_4	10.555093557141	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982771	87927293	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
ES_00005980	chr10	-	3261	12	NNC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	0	0	intron_retention	FALSE	canonical	2	6	junction_11	27.5773892291169	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982740	87927293	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_87929049_87929456_87929593_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357_87982441_87982713
ES_00005983	chr10	-	2925	2	FSM	ENSMUSG00000112428.2	ENSMUST00000219185.2	960	2	-48	-1917	-48	1917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGTCTGTCGTGAGTTC	9822	False	NA	NA	False	NA	NA	NA	88494140	88484050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_88486770_88493934
ES_00005984	chr10	-	2859	1	Genic_Genomic	ENSMUSG00000112428.2	novel	NA	NA	NA	NA	7180	1914	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCAGTCTGTCGTGAG	NA	False	NA	NA	False	NA	NA	NA	88486912	88484053	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_-_88484100_88486900
ES_00005986	chr10	-	2796	4	ISM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	75476	-1	-3497	1	intron_retention	FALSE	canonical	3	237	junction_3	25.3902868567227	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGCCTGAAAGACTATGA	NA	False	NA	0	True	ATTAAA	-17	NA	88587190	88582467	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121
ES_00005987	chr10	-	6539	12	NNC	ENSMUSG00000074802.12	novel	6305	11	NA	NA	0	1	intron_retention	TRUE	non_canonical	3	41	junction_1	9.10816544019433	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCCTAACTTTATAAG	NA	False	NA	50	True	AATAAA	-19	NA	89279829	89244683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_89245617_89245823_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
ES_00005989	chr10	-	1717	11	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	-11	1	combination_of_known_junctions	FALSE	canonical	2	8	junction_7	88.8560633834293	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGTTTAATGTTTAT	NA	False	NA	-17	True	AATAAA	-22	NA	89568118	89547831	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561816_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ES_00005990	chr10	-	618	7	FSM	ENSMUSG00000019948.5	ENSMUST00000218965.2	618	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	105.720412199138	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTCTGCCTGACTTCA	NA	False	NA	NA	False	AATACA	-12	NA	89568135	89560907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89568035
ES_00005992	chr10	-	1295	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_7	1443.65631333098	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959817	90952652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959773
ES_00005994	chr10	-	1653	6	FSM	ENSMUSG00000008398.17	ENSMUST00000129827.8	1653	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	17.64086165696	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCAAAGTGCACTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	93146673	93085184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_93085971_93090550_93090674_93100741_93100873_93101198_93101543_93120630_93120840_93146613
ES_00005995	chr10	-	1233	3	NNC	ENSMUSG00000045867.11	novel	1115	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	39.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159549	95011126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_95011841_95158447_95158748_95159330
ES_00005996	chr10	-	1082	3	NIC	ENSMUSG00000045867.11	novel	1115	3	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_2	34	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159926	95011126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_95011841_95158447_95158752_95159862
ES_00005998	chr10	-	238	3	Genic_Genomic	ENSMUSG00000112025.2	novel	412	1	NA	NA	-29547	38887	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCAAAAAACAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	95568871	95500025	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_-_95500049_95539242_95539269_95568682
ES_00005999	chr10	-	332	1	FSM	ENSMUSG00000074780.3	ENSMUST00000218771.2	399	1	91	-24	91	24	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATTCCAGACCACCCCA	5619	False	NA	NA	False	NA	NA	NA	95509160	95508828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_95508800_95509200
ES_00006000	chr10	-	340	2	ISM	ENSMUSG00000112289.2	ENSMUST00000218396.2	989	3	2161	324	2161	28	3prime_fragment	FALSE	canonical	3	12	junction_1	0	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCAACCCACCTAGGCT	7987	False	NA	NA	False	NA	NA	NA	95556190	95555318	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_95555519_95556050
ES_00006002	chr10	-	538	1	FSM	ENSMUSG00000112245.2	ENSMUST00000218709.2	712	1	-26	200	-26	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACAAAGTAGAAATAGGG	NA	False	NA	NA	False	NA	NA	NA	100134540	100134002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100134000_100134500
ES_00006004	chr10	-	899	8	FSM	ENSMUSG00000035798.15	ENSMUST00000099285.4	1146	8	-143	390	-6	-390	multi-exon	FALSE	canonical	2	6	junction_1	9.28021815366384	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCACATGGCCCTCTAGTG	NA	False	NA	NA	False	TTTAAA	-36	NA	110846007	110798253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_110798266_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
ES_00006005	chr10	-	1827	8	NNC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	63.4967458590901	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	-1	True	TATAAA	-22	NA	115198118	115176643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_115177245_115178378_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ES_00006006	chr10	-	1829	8	NNC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	82.5234660504489	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	-1	True	TATAAA	-22	NA	115198133	115176643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_115177245_115178378_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197969
ES_00006007	chr10	-	226	1	Genic_Genomic	ENSMUSG00000112099.2	novel	NA	NA	NA	NA	1150	73	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCAATGGATCAACAAAT	NA	False	NA	NA	False	AATAAA	-45	NA	115435083	115434857	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_-_115434900_115435100
ES_00006008	chr10	-	2311	1	FSM	ENSMUSG00000074734.4	ENSMUST00000099261.3	2254	1	-78	21	-78	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGAATCATTGCAGACT	NA	False	NA	NA	False	AATAAA	-21	NA	115949900	115947589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_115947600_115949900
ES_00006009	chr10	-	2164	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	93	junction_16	168.781466973569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417402	116321691	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385011_116417357
ES_00006016	chr10	-	2697	10	FSM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	0	-7	0	7	multi-exon	FALSE	canonical	3	22	junction_7	97.8627156332334	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGTTATTTTCTGTTCT	NA	False	NA	2	True	ATTAAA	-23	NA	116786285	116741681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116773301_116773561_116775105_116775387_116786164
ES_00006018	chr10	-	513	1	FSM	ENSMUSG00000111966.2	ENSMUST00000219792.2	443	1	-10	-60	-10	60	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAGAAATGTATGTATG	NA	False	NA	NA	False	NA	NA	NA	116809123	116808610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_116808600_116809100
ES_00006021	chr10	-	6519	11	NNC	ENSMUSG00000055531.13	novel	2227	11	NA	NA	0	29744	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.843102139512	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGCTCAGTGGTTAAGAG	4516	False	NA	NA	False	NA	NA	NA	117212833	117150833	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_117150863_117180571_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00006023	chr10	-	3819	9	FSM	ENSMUSG00000055531.13	ENSMUST00000177145.8	3819	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	46.3355627461241	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTAAGTGTCAGTCT	4516	False	NA	NA	False	AATAAA	-22	NA	117212833	117189709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00006025	chr10	-	203	2	Intergenic	novelGene_401	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	72	junction_1	0	355	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTGCTGAGGGCCTG	8445	False	NA	NA	False	NA	NA	NA	117331303	117266785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_117266935_117331249
ES_00006026	chr10	-	3069	10	NIC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	-15	3	combination_of_known_junctions	FALSE	canonical	3	99	junction_9	135.429996494932	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTGTCTTACACATTT	NA	False	NA	-16	True	AATAAA	-24	NA	117546212	117524796	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545850
ES_00006029	chr10	-	2403	1	FSM	ENSMUSG00000112781.2	ENSMUST00000218329.2	2409	1	-104	110	-104	-110	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGTGTCTAAAGGAAGAT	NA	False	NA	NA	False	AAGAAA	-29	NA	118179264	118176861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_118176900_118179300
ES_00006030	chr10	-	2159	1	FSM	ENSMUSG00000112919.2	ENSMUST00000178998.3	2409	1	24	226	24	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGGGCTCATGAAACAGT	NA	False	NA	NA	False	NA	NA	NA	118189986	118187827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_118187800_118190000
ES_00006031	chr10	-	3054	12	FSM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	43	0	-29	0	multi-exon	FALSE	canonical	2	13	junction_2	3.60440501847255	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTTTGTTAACTCAGAA	NA	False	NA	NA	False	ATTAAA	-17	NA	120037521	119977552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
ES_00006033	chr10	-	314	4	FSM	ENSMUSG00000020115.4	ENSMUST00000219439.2	485	4	0	171	0	9	multi-exon	FALSE	canonical	1	1	junction_3	77.6330399307466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCTGCGGCCCGGCA	NA	False	NA	NA	False	NA	NA	NA	121388354	121387155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121387228_121387391_121387499_121388104_121388198_121388312
ES_00006034	chr10	-	747	7	FSM	ENSMUSG00000020115.4	ENSMUST00000220386.2	747	7	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	13.1074618273545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGAAAGGTGAGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	121390068	121387164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807
ES_00006035	chr10	-	3939	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-165	24377	intron_retention	FALSE	non_canonical	0	0	junction_1	355.159376055314	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAGAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	121462402	121398907	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_121398942_121425524_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462034
ES_00006038	chr10	-	421	1	FSM	ENSMUSG00000111973.2	ENSMUST00000219495.2	316	1	5	-110	5	110	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTTTTTAATACTGT	NA	False	NA	NA	False	NA	NA	NA	121905351	121904930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121904900_121905400
ES_00006040	chr10	-	210	1	Intergenic	novelGene_420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAGAAGGTGCATGGAA	NA	False	NA	NA	False	CATAAA	-14	NA	126790143	126789933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_126789900_126790100
ES_00006041	chr10	-	656	5	FSM	ENSMUSG00000040521.12	ENSMUST00000145476.2	656	5	0	0	0	0	multi-exon	FALSE	canonical	3	924	junction_2	62.6917059905056	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTAAGCGAGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	126866628	126858776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331
ES_00006044	chr10	-	230	2	FSM	ENSMUSG00000040441.13	ENSMUST00000220327.2	488	2	0	258	0	-258	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGTGGATAACCCAGGAT	NA	False	NA	NA	False	NA	NA	NA	127012720	127012369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127012555_127012675
ES_00006046	chr10	-	2724	8	NIC	ENSMUSG00000025409.15	novel	4165	13	NA	NA	112	1	intron_retention	FALSE	canonical	3	40	junction_5	30.3617643540997	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGACTCTGTACTCATTT	NA	False	NA	-5	True	NA	NA	NA	127121657	127117823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120085_127120203_127120355_127120566_127121226_127121400
ES_00006047	chr10	-	2909	8	FSM	ENSMUSG00000025409.15	ENSMUST00000126243.9	2909	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	41.4778032598799	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	NA	False	NA	-6	True	NA	NA	NA	127121769	127117824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127118777_127118893_127119032_127119260_127119314_127119394_127119812_127119911_127120082_127120203_127120355_127120566_127121226_127121400
ES_00006048	chr10	-	4175	13	NNC	ENSMUSG00000025409.15	novel	4165	13	NA	NA	309	0	intron_retention	FALSE	canonical	2	5	junction_12	33.9529903772194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	NA	False	NA	-6	True	NA	NA	NA	127124413	127117824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119812_127119911_127120082_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124218
ES_00006051	chr10	-	2106	14	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	44772	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	792.48553642561	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAGAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	127358313	127308219	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_127308252_127353185_127353624_127353651_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ES_00006052	chr10	-	14893	89	FSM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	0	-5	0	5	multi-exon	TRUE	canonical	1	1	junction_84	18.7170060946926	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGTCTGCATGCTAA	NA	False	NA	NA	False	AATAAA	-44	NA	127457017	127374024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280_127393431_127393942_127394057_127394404_127394525_127394699_127394829_127394965_127395092_127395836_127396030_127396323_127396529_127399472_127399663_127402325_127402704_127403016_127403142_127403230_127403383_127404221_127404349_127404457_127404588_127404767_127404903_127405152_127405285_127407274_127407410_127407757_127407899_127408285_127408436_127408617_127408713_127408796_127408972_127409148_127409377_127409840_127409973_127410135_127410381_127410822_127410988_127411152_127411358_127412308_127412507_127412678_127412925_127413856_127414058_127414400_127414584_127417590_127417759_127419249_127419331_127419690_127419808_127420181_127420308_127420481_127420623_127423937_127424064_127424277_127424480_127425423_127425647_127426425_127426607_127427770_127428008_127429221_127429366_127429648_127429839_127430817_127431041_127431153_127431317_127441277_127441542_127441654_127441784_127443814_127443935_127446211_127446350_127448525_127448649_127456486
ES_00006055	chr10	-	440	2	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	171	junction_1	0	96	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCCATTTTCAGCACC	2995	False	NA	NA	False	NA	NA	NA	128208810	128168221	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_128168608_128208756
ES_00006056	chr10	-	729	2	FSM	ENSMUSG00000039914.7	ENSMUST00000220111.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGGCCTTGAACTTGAT	6955	False	NA	NA	False	NA	NA	NA	128204850	128203577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128204023_128204566
ES_00006057	chr10	-	1634	1	Genic_Genomic	ENSMUSG00000039878.14_ENSMUSG00000090761.2	novel	NA	NA	NA	NA	-410	1591	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGAGGCAGGGAATGAA	NA	False	NA	NA	False	NA	NA	NA	128231842	128230208	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_-_128230200_128231800
ES_00006059	chr10	-	421	5	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	0	68724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8421.22701867133	708	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTTTTAGTATGCTT	NA	False	NA	NA	False	NA	NA	NA	128384981	128315258	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315291_128383982_128384299_128384526_128384550_128384817_128384843_128384956
ES_00006060	chr10	-	533	4	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	0	68724	intron_retention	FALSE	non_canonical	0	0	junction_1	9329.97781347844	533	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTTTTAGTATGCTT	NA	False	NA	NA	False	NA	NA	NA	128384981	128315258	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315289_128383982_128384299_128384526_128384550_128384817
ES_00006061	chr10	-	513	6	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	145144	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8478.26051498773	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTTTTAGTATGCTT	NA	False	NA	NA	False	NA	NA	NA	128462393	128315258	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128315294_128374586_128374605_128460403_128460506_128461075_128461207_128461931_128462110_128462344
ES_00006062	chr10	-	693	7	FSM	ENSMUSG00000090841.3	ENSMUST00000219236.2	692	7	0	-1	0	-1	multi-exon	FALSE	canonical	3	24	junction_1	1170.06704461278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTCTTTCTTTCTT	8252	False	NA	-6	True	AATAAA	-19	NA	128329716	128326730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128326903_128327158_128327217_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ES_00006063	chr10	-	1015	7	FSM	ENSMUSG00000039824.5	ENSMUST00000026428.4	1026	7	11	0	11	0	multi-exon	FALSE	canonical	0	0	junction_1	1.63299316185545	1291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGTTTCCGACAGTTTT	3425	False	NA	-10	True	AATAAA	-14	NA	128334543	128330025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128330353_128330458_128330537_128330922_128331097_128332121_128332266_128332482_128332511_128333069_128333287_128334496
ES_00006066	chr10	-	487	5	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	54010	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7783.0833382407	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAAGAAAAGAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	128462393	128406392	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128406423_128460406_128460506_128461075_128461207_128461931_128462110_128462344
ES_00006067	chr10	-	497	5	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	25484	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7783.0833382407	1156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCTCACATTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	128462393	128434918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128434957_128460404_128460506_128461075_128461207_128461931_128462110_128462344
ES_00006068	chr10	-	501	5	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	25484	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7783.0833382407	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCTCACATTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	128462393	128434918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128434961_128460404_128460506_128461075_128461207_128461931_128462110_128462344
ES_00006069	chr10	-	490	4	FSM	ENSMUSG00000002578.19	ENSMUST00000222901.2	490	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCAATCTGCTTCGCCAC	NA	False	NA	NA	False	NA	NA	NA	128481665	128476129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128476178_128476921_128477183_128478497_128478603_128481589
ES_00006071	chr10	-	2268	8	NNC	ENSMUSG00000025358.17	novel	2240	7	NA	NA	0	10880	intron_retention	FALSE	non_canonical	0	0	junction_1	433.993745840388	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTCAATGGAACTGT	8275	False	NA	NA	False	NA	NA	NA	128540872	128522927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128522955_128533806_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ES_00006072	chr10	-	892	4	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	22564	-3	9536	3	3prime_fragment	FALSE	canonical	3	88	junction_2	12.5521135891752	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCGCAAGGTTCTGAGAA	8853	False	NA	-7	True	AATAAA	-19	NA	128557380	128555999	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046
ES_00006075	chr10	-	1051	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	384.57248991575	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657475	128654350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128654885_128655822_128655975_128656129_128656430_128657410
ES_00006082	chr10	+	214	1	Intergenic	novelGene_239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTTTTTTAAATATCAT	NA	False	NA	NA	False	NA	NA	NA	8245131	8245345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_8245100_8245300
ES_00006083	chr10	+	216	1	Intergenic	novelGene_244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTAGAGTTAGAATCTTT	4187	False	NA	NA	False	NA	NA	NA	19961307	19961523	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_19961300_19961500
ES_00006084	chr10	+	210	1	Intergenic	novelGene_245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATATATATGAATGTTT	NA	False	NA	NA	False	ATTAAA	-10	NA	20247050	20247260	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_20247000_20247300
ES_00006086	chr10	+	345	1	Intergenic	novelGene_250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTATGGTAAACTGTAT	NA	False	NA	NA	False	NA	NA	NA	24201952	24202297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_24202000_24202300
ES_00006089	chr10	+	1255	1	Intergenic	novelGene_257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCTTTTATTAACTGGG	NA	False	NA	NA	False	NA	NA	NA	29749558	29750813	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_29749600_29750800
ES_00006092	chr10	+	1249	1	Intergenic	novelGene_263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTCGAACTCCTTCTCCCT	NA	False	NA	NA	False	NA	NA	NA	30781753	30783002	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_30781800_30783000
ES_00006093	chr10	+	224	1	Intergenic	novelGene_269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGGCTCTTTCTTGTTTC	5499	False	NA	NA	False	NA	NA	NA	39646660	39646884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_39646700_39646900
ES_00006094	chr10	+	300	1	Intergenic	novelGene_270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCATTTCCAGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	39854539	39854839	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_39854500_39854800
ES_00006095	chr10	+	215	1	Intergenic	novelGene_272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGCGCACCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	40055238	40055453	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_40055200_40055500
ES_00006096	chr10	+	645	1	Intergenic	novelGene_278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCTTATAAAAGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	41290806	41291451	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_41290800_41291500
ES_00006097	chr10	+	201	1	Intergenic	novelGene_279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTACTTCTCCAAATAC	NA	False	NA	NA	False	NA	NA	NA	41588442	41588643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_41588400_41588600
ES_00006098	chr10	+	212	1	Intergenic	novelGene_281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTCGAGCACCTTGAGTC	5607	False	NA	NA	False	NA	NA	NA	42540715	42540927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_42540700_42540900
ES_00006099	chr10	+	275	1	Intergenic	novelGene_283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	414	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAGGCCACGCCCTCAA	NA	False	NA	NA	False	TTTAAA	-37	NA	43423490	43423765	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_43423500_43423800
ES_00006100	chr10	+	260	1	Intergenic	novelGene_287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGAGGCAGGCGAATTT	NA	False	NA	NA	False	NA	NA	NA	46676293	46676553	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_46676300_46676600
ES_00006101	chr10	+	248	1	Intergenic	novelGene_288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGGCATAAGGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	54569487	54569735	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_54569500_54569700
ES_00006103	chr10	+	203	1	Intergenic	novelGene_291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATGTTAAG	NA	False	NA	NA	False	NA	NA	NA	58154950	58155153	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_58155000_58155200
ES_00006104	chr10	+	283	1	Intergenic	novelGene_300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCATGTCTTCCAATGTA	NA	False	NA	NA	False	NA	NA	NA	60422989	60423272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_60423000_60423300
ES_00006105	chr10	+	208	1	Intergenic	novelGene_303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTTTTAAAAATTCTG	NA	False	NA	NA	False	NA	NA	NA	61323188	61323396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_61323200_61323400
ES_00006107	chr10	+	232	1	Intergenic	novelGene_314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTTTTTTTTAAACTGT	NA	False	NA	NA	False	NA	NA	NA	66688174	66688406	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_66688200_66688400
ES_00006108	chr10	+	205	1	Intergenic	novelGene_315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATCCACTTTTGACTTA	NA	False	NA	NA	False	NA	NA	NA	66722321	66722526	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_66722300_66722500
ES_00006111	chr10	+	248	1	Intergenic	novelGene_318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAGAAA	1584	False	NA	NA	False	NA	NA	NA	69897126	69897374	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_69897100_69897400
ES_00006112	chr10	+	224	1	Intergenic	novelGene_319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTGTTTCTCAACAGCC	6292	False	NA	NA	False	NA	NA	NA	69918360	69918584	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_69918400_69918600
ES_00006114	chr10	+	203	1	Intergenic	novelGene_321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCAAAATCTTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	71257793	71257996	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_71257800_71258000
ES_00006115	chr10	+	5564	1	Intergenic	novelGene_327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAGTAGTTGCTCTTA	2732	False	NA	NA	False	NA	NA	NA	74550608	74556172	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_74550600_74556200
ES_00006116	chr10	+	262	1	Intergenic	novelGene_334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTGTACACTCTTAACAT	NA	False	NA	NA	False	NA	NA	NA	75682895	75683157	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75682900_75683200
ES_00006117	chr10	+	231	1	Intergenic	novelGene_344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACACACACACACACACA	NA	False	NA	NA	False	AATATA	-32	NA	78463702	78463933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_78463700_78463900
ES_00006118	chr10	+	200	1	Intergenic	novelGene_346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTACTATAAAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	79562669	79562869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79562700_79562900
ES_00006120	chr10	+	238	1	Intergenic	novelGene_353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAGCCATCTCACCAGC	3051	False	NA	NA	False	NA	NA	NA	80182772	80183010	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_80182800_80183000
ES_00006121	chr10	+	214	1	Intergenic	novelGene_359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATGCCTTTAATCCCAGC	3405	False	NA	NA	False	NA	NA	NA	81060930	81061144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81060900_81061100
ES_00006122	chr10	+	334	1	Intergenic	novelGene_365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTCAGTATTCTTAACT	NA	False	NA	NA	False	NA	NA	NA	81879288	81879622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81879300_81879600
ES_00006123	chr10	+	211	1	Intergenic	novelGene_370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAAACAGCTCTTGCAG	NA	False	NA	NA	False	NA	NA	NA	84879095	84879306	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_84879100_84879300
ES_00006125	chr10	+	215	1	Intergenic	novelGene_389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGACTAACCTTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	98724546	98724761	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_98724500_98724800
ES_00006127	chr10	+	220	1	Intergenic	novelGene_393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTTAACTCCAACACGCA	NA	False	NA	NA	False	NA	NA	NA	108248202	108248422	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_108248200_108248400
ES_00006128	chr10	+	202	1	Intergenic	novelGene_397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTACCTTTCATAGTTGG	NA	False	NA	NA	False	NA	NA	NA	116167553	116167755	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_116167600_116167800
ES_00006129	chr10	+	208	1	Intergenic	novelGene_405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTTTGCAACAAAACAGA	NA	False	NA	NA	False	NA	NA	NA	118959143	118959351	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_118959100_118959400
ES_00006131	chr10	+	388	1	Intergenic	novelGene_421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAATAAATCTTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126909051	126909439	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_126909100_126909400
ES_00006132	chr10	+	219	1	Intergenic	novelGene_422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTTTTCTTACTGTT	7718	False	NA	NA	False	NA	NA	NA	127250442	127250661	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_127250400_127250700
ES_00006133	chr10	+	201	1	Intergenic	novelGene_423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTGCCTCTTATGTA	NA	False	NA	NA	False	NA	NA	NA	127406603	127406804	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_127406600_127406800
ES_00006134	chr10	+	212	1	Intergenic	novelGene_428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCACCAGCCCCAAGAAT	NA	False	NA	NA	False	NA	NA	NA	128027877	128028089	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128027900_128028100
ES_00006142	chr10	+	7221	17	FSM	ENSMUSG00000040624.19	ENSMUST00000120274.8	7369	17	148	0	134	0	multi-exon	FALSE	canonical	0	0	junction_1	9.86074921088656	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATTGAATTAATGGGT	NA	False	NA	NA	False	AATAAA	-22	NA	3690511	3917303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_3690541_3752739_3752801_3822926_3823442_3853556_3853658_3869135_3869206_3880206_3880254_3883596_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3913400
ES_00006145	chr10	+	3200	4	FSM	ENSMUSG00000055493.5	ENSMUST00000069106.5	3287	4	87	0	38	0	multi-exon	FALSE	canonical	0	0	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAACATAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	11219234	11335388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_11219513_11266554_11266730_11324385_11324628_11332883
ES_00006146	chr10	+	2985	8	NIC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	-9	-1086	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	46.9511252609062	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAGTGGCCAACTAATT	2904	False	NA	NA	False	AAGAAA	-19	NA	12966425	13005627	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_12966765_12981598_12981638_12988262_12988295_12989901_12989965_12992439_12992526_13000599_13000913_13002885_13004741_13005369
ES_00006152	chr10	+	1269	7	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	40	-99	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	36.5957647822805	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCACATCGTTTGTAG	NA	False	NA	-97	True	AAAAAG	-32	NA	22034507	22059714	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_22034618_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ES_00006153	chr10	+	1320	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237765	22250038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ES_00006154	chr10	+	2823	14	NNC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	9	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	27.2915445214606	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCATTGTATTCATTCAA	NA	False	NA	23	True	AATAAA	-16	NA	23672892	23703865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_23673082_23674643_23674784_23679659_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ES_00006157	chr10	+	4871	30	FSM	ENSMUSG00000019984.17	ENSMUST00000092646.13	5098	30	6	221	6	0	multi-exon	TRUE	canonical	2	4	junction_10	16.8422067632588	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGACTGCTTTGTAAC	NA	False	NA	13	True	AATAAA	-20	NA	24745889	24789358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24759101_24759120_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
ES_00006158	chr10	+	2192	15	FSM	ENSMUSG00000019984.17	ENSMUST00000177522.8	2192	15	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_10	18.5688184979057	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAGAAAATATCTAAA	NA	False	NA	NA	False	NA	NA	NA	24745934	24770248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24759101_24759120_24764297_24764499_24767016_24767161_24768411_24768558_24769512
ES_00006159	chr10	+	3621	16	FSM	ENSMUSG00000019978.17	ENSMUST00000217929.2	3621	16	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_12	90.5506610810889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTCACTTCTCTTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	25317470	25399415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378037_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ES_00006160	chr10	+	5635	31	NNC	ENSMUSG00000019889.11	novel	4754	34	NA	NA	-512	64313	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_30	39.6069017554601	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATATATATTTACACTT	NA	False	NA	NA	False	NA	NA	NA	27950303	28537706	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797_28472369_28537681
ES_00006161	chr10	+	469	1	FSM	ENSMUSG00000111090.2	ENSMUST00000214789.2	3198	1	5	2724	5	-2724	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATGGTGTTACACATCAA	NA	False	NA	NA	False	AATAAA	-26	NA	29238148	29238617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_29238100_29238600
ES_00006162	chr10	+	334	1	ISM	ENSMUSG00000111554.2	ENSMUST00000216549.2	2559	3	1662	4149	1662	-4149	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATCAGACAACAACGAGCA	NA	False	NA	NA	False	ATTAAA	-16	NA	29888608	29888942	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_29888600_29888900
ES_00006163	chr10	+	205	2	Genic_Genomic	ENSMUSG00000110791.2	novel	3016	1	NA	NA	562	9521	multi-exon	FALSE	non_canonical	0	0	junction_1	0	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAATTTCTTATTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34170115	34182090	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_+_34170131_34181900
ES_00006164	chr10	+	943	3	NNC	ENSMUSG00000046463.6	novel	1791	3	NA	NA	1390	-59	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATGGACTCACCCTCTG	NA	False	NA	-55	True	NA	NA	NA	37018474	37027252	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_37018518_37024872_37025003_37026482
ES_00006165	chr10	+	3484	13	NIC	ENSMUSG00000019843.15	novel	3528	14	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	34.7478016890597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATTTTTGTTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	39245797	39441368	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_39246187_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ES_00006166	chr10	+	875	1	FSM	ENSMUSG00000111847.2	ENSMUST00000214635.2	1332	1	40	417	40	-417	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAGAAGAAAGCAGAGAAG	4858	False	NA	NA	False	NA	NA	NA	39538124	39538999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_39538100_39539000
ES_00006167	chr10	+	10662	34	NIC	ENSMUSG00000019841.16	novel	10789	33	NA	NA	60	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_26	21.7519617978915	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGACTTTTATCTTAA	NA	False	NA	18	True	AATAAA	-14	NA	39608419	39751207	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_39608610_39618686_39618815_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727272_39727400_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ES_00006170	chr10	+	5801	14	NNC	ENSMUSG00000038481.14	novel	5807	13	NA	NA	8	60861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	9.74284747510074	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAACCAACCAACCAAC	NA	False	NA	NA	False	NA	NA	NA	40225340	40420675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_40225718_40270320_40270397_40310299_40310411_40312067_40312209_40330010_40330069_40342633_40342766_40345574_40345719_40345881_40345952_40351564_40351638_40352152_40352251_40352884_40352964_40353697_40353965_40355670_40359815_40420644
ES_00006171	chr10	+	2731	9	NNC	ENSMUSG00000019831.15	novel	2719	9	NA	NA	-16	0	at_least_one_novel_splicesite	TRUE	canonical	3	34	junction_5	78.456098392668	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTCGCTCTTCGAG	NA	False	NA	17	True	AATAAA	-19	NA	40759806	40814565	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_40760067_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809111_40809282_40810472_40810653_40812105_40812735_40813641
ES_00006172	chr10	+	623	2	FSM	ENSMUSG00000019826.12	ENSMUST00000214159.2	623	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACAGGTACAGGGCGCCA	NA	False	NA	NA	False	NA	NA	NA	41331206	41332604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_41331753_41332527
ES_00006173	chr10	+	229	1	Intergenic	novelGene_280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCTGTAACATCAAAATAAA	1262	False	NA	NA	False	NA	NA	NA	42536370	42536599	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_42536400_42536600
ES_00006174	chr10	+	1755	4	FSM	ENSMUSG00000044770.15	ENSMUST00000130511.8	2381	4	626	0	48	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATACGCAGACGTGTTT	4333	False	NA	NA	False	NA	NA	NA	42810959	42834766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_42811144_42822864_42823138_42831884_42832031_42833614
ES_00006175	chr10	+	706	3	FSM	ENSMUSG00000038240.14	ENSMUST00000162008.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	36.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATAAGTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	43269916	43316244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_43270041_43271556_43271689_43315794
ES_00006176	chr10	+	1262	5	NNC	ENSMUSG00000019848.15	novel	1369	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	10.280442597476	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGTATTCCTTACTGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	45165497	45194213	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_45165672_45190656_45191005_45191163_45191376_45192526_45192636_45193794
ES_00006178	chr10	+	3499	23	NIC	ENSMUSG00000038822.16	novel	3785	24	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_6	29.462821508465	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGCATCTTTCTGTGC	1795	False	NA	4	True	ATTAAA	-17	NA	45453941	45588255	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45548423_45548536_45548634_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45562697_45562830_45576672_45576772_45577049_45577121_45585976_45586091_45587529
ES_00006180	chr10	+	819	2	Genic_Genomic	ENSMUSG00000110841.2	novel	555	1	NA	NA	-9	70879	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGCCATGGAGGGCCAC	NA	False	NA	NA	False	NA	NA	NA	45751377	45823061	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_+_45752162_45823026
ES_00006181	chr10	+	297	1	FSM	ENSMUSG00000056219.8	ENSMUST00000168554.3	506	1	-14	223	-14	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCCAGTTCACCGCCTGT	6047	False	NA	NA	False	NA	NA	NA	53351045	53351342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_53351000_53351300
ES_00006182	chr10	+	288	1	FSM	ENSMUSG00000019857.8	ENSMUST00000219533.2	955	1	-2	669	-2	-669	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCGGAAGGCGGGCGCTG	2019	False	NA	NA	False	NA	NA	NA	53473545	53473833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_53473500_53473800
ES_00006183	chr10	+	206	2	Antisense	novelGene_ENSMUSG00000038122.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGAGAGTTCTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	56044786	56099838	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_56044814_56099659
ES_00006184	chr10	+	1211	4	Antisense	novelGene_ENSMUSG00000038122.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	119	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTTCTCCACATCCTC	NA	False	NA	NA	False	NA	NA	NA	56044786	56127653	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_56044811_56099621_56099655_56126453_56126511_56126556
ES_00006185	chr10	+	1952	2	FSM	ENSMUSG00000038039.14	ENSMUST00000162965.2	1952	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTGCATTTTCATGAC	NA	False	NA	2	True	ATTAAA	-12	NA	58134231	58141411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_58134688_58139915
ES_00006186	chr10	+	358	4	FSM	ENSMUSG00000009646.14	ENSMUST00000009790.14	1091	4	256	477	256	-471	multi-exon	FALSE	canonical	1	3	junction_2	0.471404520791032	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGGACCTTGGGCTGCC	9663	False	NA	NA	False	NA	NA	NA	59239737	59257321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_59239804_59246798_59246888_59252169_59252336_59257284
ES_00006189	chr10	+	1294	11	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1212.87560780156	248	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2121	False	NA	15	True	AATAAA	-16	NA	61484399	61509947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_61484570_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ES_00006190	chr10	+	1304	11	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	1211.38395647293	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2121	False	NA	15	True	AATAAA	-16	NA	61484399	61509947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_61484580_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ES_00006191	chr10	+	639	4	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	26.9608770051883	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTGCTACTTCATAAC	NA	False	NA	23	True	NA	NA	NA	61670343	61710020	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_61670501_61698165_61698280_61709460_61709561_61709752
ES_00006192	chr10	+	828	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	18.5	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGTGGCACACACCTTT	NA	False	NA	NA	False	NA	NA	NA	61751971	61768390	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_61752029_61767364_61767722_61767976
ES_00006193	chr10	+	211	1	Intergenic	novelGene_307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTGGTTCCAGATTC	NA	False	NA	NA	False	NA	NA	NA	62556625	62556836	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62556600_62556800
ES_00006194	chr10	+	349	1	Intergenic	novelGene_309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGCACACACATACACGCA	NA	False	NA	NA	False	NA	NA	NA	62630319	62630668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62630300_62630700
ES_00006196	chr10	+	1775	6	FSM	ENSMUSG00000020064.10	ENSMUST00000219177.2	1775	6	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	20.4685124032012	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTGAAACAAGTCACAAT	NA	False	NA	NA	False	AATAAA	-20	NA	63079722	63110212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229
ES_00006197	chr10	+	1300	1	FSM	ENSMUSG00000112411.2	ENSMUST00000218100.2	1584	1	289	-5	289	5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAAATTGTTGACAAGT	NA	False	NA	NA	False	NA	NA	NA	63086999	63088299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_63087000_63088300
ES_00006198	chr10	+	8319	25	NIC	ENSMUSG00000037876.18	novel	2015	12	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	36.3191629477088	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGATGTTACAGTTCT	NA	False	NA	13	True	ATTAAA	-14	NA	66932186	67092097	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67053895_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ES_00006199	chr10	+	8610	25	FSM	ENSMUSG00000037876.18	ENSMUST00000173689.8	8609	25	-1	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	37.0309320778664	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGATGTTACAGTTCT	NA	False	NA	13	True	ATTAAA	-14	NA	67021527	67092097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_67022091_67025514_67025629_67051048_67051155_67052761_67052887_67053816_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ES_00006200	chr10	+	318	2	Antisense	novelGene_ENSMUSG00000112509.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAGATTTGAATTTTTG	NA	False	NA	NA	False	NA	NA	NA	69208219	69209047	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_69208282_69208791
ES_00006201	chr10	+	365	1	FSM	ENSMUSG00000069601.15	ENSMUST00000182142.2	4181	1	172	3644	-6	-3644	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAAAAACAGGGATTT	8084	False	NA	NA	False	NA	NA	NA	69542297	69542662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_69542300_69542700
ES_00006203	chr10	+	2019	15	NIC	ENSMUSG00000043259.16	novel	3380	15	NA	NA	14	-1344	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	7.71329358699535	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGATGAAGTCAAGTT	9700	False	NA	NA	False	NA	NA	NA	70276511	70393215	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_70276729_70276866_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
ES_00006205	chr10	+	3131	2	Genic_Genomic	ENSMUSG00000112714.2	novel	1699	1	NA	NA	11	1876	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAATAAA	NA	False	NA	45	True	AATAAA	-26	NA	71540130	71543694	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_+_71541876_71542308
ES_00006206	chr10	+	3108	2	Genic_Genomic	ENSMUSG00000112714.2	novel	1699	1	NA	NA	38	1877	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAATAAAA	NA	False	NA	46	True	AATAAA	-27	NA	71540157	71543695	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_+_71541879_71542308
ES_00006207	chr10	+	2640	1	FSM	ENSMUSG00000053830.5	ENSMUST00000217785.2	1836	1	-121	-683	-121	683	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAGTATGTTTGCATG	NA	False	NA	NA	False	AATAAA	-14	NA	72145029	72147669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_72145000_72147700
ES_00006208	chr10	+	489	4	FSM	ENSMUSG00000009681.11	ENSMUST00000218591.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	20.6074420214316	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCATACACCAGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	74996191	75007380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_74996237_75001876_75001975_75003938_75004071_75007166
ES_00006209	chr10	+	1469	8	FSM	ENSMUSG00000009681.11	ENSMUST00000218465.2	1460	8	-9	0	-9	0	multi-exon	FALSE	canonical	0	0	junction_1	15.7635591132957	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGGGGCCACAGCCAT	NA	False	NA	9	True	AATAAA	-18	NA	75009787	75018614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75010000_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ES_00006210	chr10	+	2998	10	FSM	ENSMUSG00000033427.15	ENSMUST00000039925.8	3042	10	44	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	0.993807989999907	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTCTTGGTGTCTCTC	1623	False	NA	NA	False	NA	NA	NA	75242788	75277513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75242994_75248600_75248773_75250823_75250912_75260326_75260422_75264014_75264177_75265795_75265966_75271979_75272062_75272709_75272753_75273890_75274046_75275687
ES_00006211	chr10	+	2339	16	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-10002	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	136.808609215778	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	18	True	AATAAA	-41	NA	75387435	75422016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75387610_75397567_75397641_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ES_00006212	chr10	+	361	1	FSM	ENSMUSG00000112789.2	ENSMUST00000219818.2	326	1	25	-60	25	60	mono-exon	FALSE	NA	NA	NA	NA	NA	550	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTGAATCACAATTTAAGA	NA	False	NA	NA	False	NA	NA	NA	75603019	75603380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_75603000_75603400
ES_00006215	chr10	+	715	5	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	281	30203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7289.49097588439	1149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAACAAAACAAAAAACA	7227	False	NA	NA	False	NA	NA	NA	75771687	75803784	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408_75773580_75803747
ES_00006216	chr10	+	5092	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	-187	-256	at_least_one_novel_splicesite	FALSE	canonical	1	26	junction_1	62	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATTTATTATTGTGTGT	NA	False	NA	25	True	AATAAA	-33	NA	75868296	75878812	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_75868584_75869448_75869509_75874067
ES_00006217	chr10	+	212	1	Intergenic	novelGene_337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTTTTTTAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	75908705	75908917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75908700_75908900
ES_00006218	chr10	+	700	2	NNC	ENSMUSG00000020229.5	novel	2055	15	NA	NA	40191	197	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACTTCATGTAAGTATG	NA	False	NA	NA	False	AATAAA	-30	NA	76023475	76025296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_76023772_76024892
ES_00006221	chr10	+	1029	1	FSM	ENSMUSG00000112612.2	ENSMUST00000218871.2	853	1	3	-179	3	179	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGTCTATCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	76972936	76973965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_76972900_76974000
ES_00006224	chr10	+	277	1	FSM	ENSMUSG00000112021.2	ENSMUST00000218641.2	1699	1	-35	1457	-35	-1457	mono-exon	FALSE	NA	NA	NA	NA	NA	243	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCCCCCACCGGCCCGC	140	False	NA	NA	False	GGGGCT	-28	NA	78427511	78427788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_78427500_78427800
ES_00006225	chr10	+	256	2	Intergenic	novelGene_345	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACCCTAACTATGAC	NA	False	NA	NA	False	NA	NA	NA	79342087	79354171	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79342116_79353943
ES_00006226	chr10	+	396	4	FSM	ENSMUSG00000020307.16	ENSMUST00000219074.2	377	4	-19	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	953.987188360282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGCCCAACACCTTC	NA	False	NA	NA	False	NA	NA	NA	79518295	79521095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521013
ES_00006227	chr10	+	1839	3	FSM	ENSMUSG00000020327.5	ENSMUST00000219228.2	2167	3	0	328	0	-328	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATACATGCTGCAAGTCCA	NA	False	NA	NA	False	NA	NA	NA	79590909	79594102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79591140_79592413_79592518_79592597
ES_00006229	chr10	+	3858	23	FSM	ENSMUSG00000035697.15	ENSMUST00000099501.10	3948	23	86	4	0	0	multi-exon	TRUE	canonical	1	1	junction_1	23.4611072568839	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	NA	False	NA	12	True	AATAAA	-17	NA	79852572	79867302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79852753_79853613_79853939_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
ES_00006230	chr10	+	3663	11	FSM	ENSMUSG00000003068.18	ENSMUST00000144883.8	3663	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	30.2019866896203	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGCTATGAGGGTGT	2647	False	NA	19	True	AATAAA	-14	NA	79951636	79966303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79964224_79965535_79965738_79965946_79966089
ES_00006231	chr10	+	3847	7	FSM	ENSMUSG00000020156.17	ENSMUST00000146538.2	3847	7	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	43.6603048800878	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATAGTCATTGCA	NA	False	NA	17	True	TATAAA	-15	NA	80070093	80079735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80070162_80071944_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ES_00006232	chr10	+	759	8	FSM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	-3	2	0	-2	multi-exon	FALSE	canonical	3	1255	junction_1	343.259525783067	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTGTGTGTTCTGTGTG	9689	False	NA	21	True	AATAAA	-12	NA	80085282	80092624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ES_00006234	chr10	+	2014	11	NIC	ENSMUSG00000069565.13	novel	2081	12	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	311.939882028573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100854	80124242	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120242_80120384_80121083_80121261_80123372
ES_00006236	chr10	+	1860	8	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	34287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	233.339552881151	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGGGTCAGGGGTGGAG	NA	False	NA	NA	False	NA	NA	NA	80438705	80485904	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437_80451616_80485854
ES_00006238	chr10	+	1459	8	ISM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	327	23	0	0	intron_retention	FALSE	canonical	2	9	junction_4	6.01019541941789	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATTAAAATGCCCTGACA	NA	False	NA	-21	True	NA	NA	NA	80538586	80541184	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251
ES_00006239	chr10	+	7824	16	ISM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	26665	0	-3293	0	intron_retention	FALSE	canonical	3	72	junction_4	15.3153517752613	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTTCTCAGTGCCAGTT	2291	False	NA	16	True	AATAAA	-20	NA	80617704	80631295	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444
ES_00006241	chr10	+	3127	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	0	48459	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	1898.57666343468	3685	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAGATGGTGCATCTT	2181	False	NA	NA	False	NA	NA	NA	81012464	81066791	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722_81018340_81066760
ES_00006242	chr10	+	3117	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	0	48459	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1898.57666343468	573	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAGATGGTGCATCTT	2181	False	NA	NA	False	NA	NA	NA	81012464	81066791	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722_81018330_81066760
ES_00006244	chr10	+	2287	12	FSM	ENSMUSG00000004931.12	ENSMUST00000220297.2	2268	12	-19	0	-19	0	multi-exon	FALSE	canonical	0	0	junction_1	66.1833166663524	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	89	False	NA	18	True	TATAAA	-21	NA	81102774	81109070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81102968_81104007_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ES_00006245	chr10	+	288	1	FSM	ENSMUSG00000098811.3	ENSMUST00000184244.3	66	1	-233	11	-233	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCTCAGGGGAAGCCC	NA	False	NA	NA	False	NA	NA	NA	81221947	81222235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81221900_81222200
ES_00006246	chr10	+	1217	7	NIC	ENSMUSG00000054452.11	novel	1411	7	NA	NA	0	108	combination_of_known_junctions	FALSE	canonical	3	368	junction_6	1051.93209804098	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTATGATTTCTTTC	51	False	NA	19	True	AATAAA	-19	NA	81395321	81401999	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401308
ES_00006247	chr10	+	2551	8	ISM	ENSMUSG00000054708.18	ENSMUST00000154707.8	4635	18	6930	0	-299	0	3prime_fragment	FALSE	canonical	3	11	junction_4	37.6931759102902	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAGTCGCAAGAGTTG	NA	False	NA	NA	False	AATAAA	-26	NA	81476466	81483441	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_81476647_81476725_81476825_81477809_81477883_81478134_81478254_81478350_81479728_81482138_81482268_81482626_81482693_81482933
ES_00006248	chr10	+	564	4	Intergenic	novelGene_362	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	3.77123616632825	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGAACTCATACTGGAG	NA	False	NA	NA	False	NA	NA	NA	81523231	81627948	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81523350_81532207_81532335_81627093_81627155_81627690
ES_00006249	chr10	+	1741	3	Intergenic	novelGene_364	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_2	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTGATACTGCCTCTG	3903	False	NA	NA	False	NA	NA	NA	81691308	81693758	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_81691437_81691636_81691698_81692206
ES_00006250	chr10	+	3000	4	Antisense	novelGene_ENSMUSG00000112051.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	11.0855260988773	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTTTTTGTTTTAAATCC	2339	False	NA	NA	False	NA	NA	NA	81814512	81828037	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_81814609_81824424_81824552_81824751_81824813_81825321
ES_00006251	chr10	+	243	1	FSM	ENSMUSG00000112381.2	ENSMUST00000218581.2	945	1	492	210	492	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCAAGAAGGTGGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	81856876	81857119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81856900_81857100
ES_00006252	chr10	+	1647	2	FSM	ENSMUSG00000061371.8	ENSMUST00000209614.2	1647	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	81896092	81900579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_81897183_81900022
ES_00006253	chr10	+	2959	10	FSM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	369.308195427446	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465661	82486158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_82465774_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ES_00006256	chr10	+	5630	3	NNC	ENSMUSG00000034612.8	novel	5527	3	NA	NA	-124	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCCAGAATCTGTTT	9003	False	NA	NA	False	ATTAAA	-15	NA	82821207	83031728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_82821802_82927902_82927989_83026778
ES_00006257	chr10	+	380	2	ISM	ENSMUSG00000112134.2	ENSMUST00000219407.2	603	4	-122	953	-122	-953	5prime_fragment	FALSE	canonical	3	4	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGGCTTCTTCCCCAACA	NA	False	NA	NA	False	NA	NA	NA	83180254	83185990	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_83180563_83185918
ES_00006258	chr10	+	376	3	NNC	ENSMUSG00000112326.2	novel	218	2	NA	NA	-352	79	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	62	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAATTTAGGGGGCTCAAT	NA	False	NA	NA	False	AGTAAA	-17	NA	85665253	85669258	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_85665324_85665596_85665714_85669069
ES_00006259	chr10	+	373	1	FSM	ENSMUSG00000085111.4	ENSMUST00000170396.3	2016	1	1030	613	-63	-613	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCTTTCACCTTCATTG	NA	False	NA	NA	False	NA	NA	NA	85764574	85764947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_85764600_85764900
ES_00006260	chr10	+	638	2	FSM	ENSMUSG00000089881.2	ENSMUST00000162458.2	623	2	-15	0	-15	0	multi-exon	FALSE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATTCTTTACTGAATGC	NA	False	NA	NA	False	NA	NA	NA	86744609	86745877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_86744697_86745326
ES_00006264	chr10	+	3097	16	NNC	ENSMUSG00000020024.8	novel	3639	16	NA	NA	0	179	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	71.1121180484264	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTAAACAGTTGAGATGG	9520	False	NA	42	True	NA	NA	NA	94524531	94626234	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573842_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
ES_00006265	chr10	+	1157	1	FSM	ENSMUSG00000112408.2	ENSMUST00000169259.4	874	1	6	-289	6	289	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGTATTCTAGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	100166407	100167564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100166400_100167600
ES_00006266	chr10	+	453	1	FSM	ENSMUSG00000091101.3	ENSMUST00000168769.3	927	1	-2	476	-2	-476	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTACAATGGCGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	100176695	100177148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_100176700_100177100
ES_00006268	chr10	+	238	2	Antisense	novelGene_ENSMUSG00000112777.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGTCCTTGCTGCATCTT	NA	False	NA	NA	False	NA	NA	NA	100207680	100213122	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_100207786_100212989
ES_00006269	chr10	+	2587	4	FSM	ENSMUSG00000019888.17	ENSMUST00000120748.2	2603	4	16	0	16	0	multi-exon	FALSE	canonical	1	1	junction_3	0.942809041582063	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTGTTTTCTTTTT	8477	False	NA	NA	False	AAGAAA	-17	NA	102210311	102226174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_102210506_102214012_102214166_102220866_102221015_102224082
ES_00006270	chr10	+	871	1	FSM	ENSMUSG00000112523.2	ENSMUST00000220086.2	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106018881	106019752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_106018900_106019800
ES_00006272	chr10	+	2655	1	FSM	ENSMUSG00000035759.5	ENSMUST00000219990.2	3047	1	394	-2	394	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134933	111137588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111134900_111137600
ES_00006273	chr10	+	3349	14	FSM	ENSMUSG00000058799.17	ENSMUST00000218828.2	3934	14	585	0	585	0	multi-exon	FALSE	canonical	3	980	junction_9	377.08137963032	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGTGATATTTGAAGTT	NA	False	NA	NA	False	AATAAA	-24	NA	111317062	111334011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ES_00006274	chr10	+	2246	1	FSM	ENSMUSG00000111997.2	ENSMUST00000220267.2	583	1	-1600	-63	-1555	63	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTCACTCCTTTTAAAGA	NA	False	NA	NA	False	TATAAA	-20	NA	111335044	111337290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_111335000_111337300
ES_00006275	chr10	+	636	1	FSM	ENSMUSG00000112301.2	ENSMUST00000218348.2	729	1	21	72	21	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAGAAAGCAACCTGGT	NA	False	NA	NA	False	AATACA	-3	NA	115151571	115152207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_115151600_115152200
ES_00006277	chr10	+	2412	2	FSM	ENSMUSG00000034163.11	ENSMUST00000143751.2	677	2	159	-1894	159	-3	multi-exon	FALSE	canonical	3	126	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTTAATAGTGGGACTG	NA	False	NA	5	True	AATAAA	-17	NA	115264570	115268673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_115264867_115266557
ES_00006279	chr10	+	402	4	Intergenic	novelGene_400	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	5.09901951359278	110	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGAAGAGCAATAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	117060443	117063906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_117060473_117062608_117062653_117063449_117063496_117063623
ES_00006281	chr10	+	201	2	Antisense	novelGene_ENSMUSG00000112796.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGATGAGGAGAGAAGG	NA	False	NA	NA	False	NA	NA	NA	117201384	117249099	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_+_117201442_117248955
ES_00006283	chr10	+	4063	16	ISM	ENSMUSG00000034813.20	ENSMUST00000147454.8	4520	24	159089	-646	-14233	23	3prime_fragment	FALSE	canonical	1	1	junction_2	2.60426999794995	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGTGCATTGAGTATG	NA	False	NA	NA	False	AATAAA	-21	NA	119814391	119913067	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_119814513_119821378_119821535_119822236_119822390_119835656_119835844_119836430_119836577_119846110_119846192_119853977_119854048_119855865_119856012_119871255_119871401_119874195_119874336_119874503_119874699_119885255_119885413_119885909_119886022_119890737_119890972_119908535_119908683_119911194
ES_00006284	chr10	+	312	2	FSM	ENSMUSG00000020225.11	ENSMUST00000135794.2	318	2	0	6	0	-6	multi-exon	FALSE	canonical	2	3	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCTAGACCCCTAGATAA	NA	False	NA	NA	False	AATAAA	-26	NA	120038555	120039107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_120038613_120038852
ES_00006285	chr10	+	2665	3	Intergenic	novelGene_412	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	38	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTCTTCAAATGATTGG	7350	False	NA	18	True	AATAAA	-18	NA	120371505	120374524	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120373621_120373690_120373794_120374077
ES_00006287	chr10	+	4442	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	-78	0	at_least_one_novel_splicesite	TRUE	canonical	3	168	junction_8	83.7734109070414	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126814819	126835838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835253_126835393
ES_00006288	chr10	+	3038	6	FSM	ENSMUSG00000006732.15	ENSMUST00000120542.8	1044	6	-96	-1898	-70	1148	multi-exon	FALSE	canonical	3	10	junction_4	158.453273869617	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATTGTGCATATAAACA	NA	False	NA	NA	False	NA	NA	NA	126877730	126883382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880865_126880997_126881147
ES_00006289	chr10	+	1078	7	NNC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	0	1148	at_least_one_novel_splicesite	FALSE	canonical	2	38	junction_6	136.626823460435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATTGTGCATATAAACA	NA	False	NA	NA	False	NA	NA	NA	126877800	126883382	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147_126881314_126883174
ES_00006290	chr10	+	882	5	FSM	ENSMUSG00000025410.11	ENSMUST00000218556.2	882	5	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_1	39.9687377834227	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAAGGGTTCTTGCATGTG	NA	False	NA	NA	False	NA	NA	NA	127113149	127117452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127113190_127113355_127113395_127113563_127114092_127114185_127114278_127117269
ES_00006291	chr10	+	921	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	-98	-223	-79	0	multi-exon	FALSE	canonical	0	0	junction_1	357	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126563	127132157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127126761_127131189_127131348_127131591
ES_00006292	chr10	+	752	1	FSM	ENSMUSG00000098057.2	ENSMUST00000182369.2	1000	1	436	-188	436	188	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCCTTCCCAAAAACAAAC	77	False	NA	NA	False	AATAAA	-9	NA	127149453	127150205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127149500_127150200
ES_00006293	chr10	+	4237	25	NIC	ENSMUSG00000025404.16	novel	4281	27	NA	NA	-99	0	combination_of_known_junctions	TRUE	canonical	3	12	junction_14	65.118908331008	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCACTGGCCATCAGTC	NA	False	NA	4	True	TATAAA	-20	NA	127216431	127335236	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_+_127216806_127226179_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127300850_127300883_127307636_127307870_127312388_127312568_127317561_127317664_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
ES_00006294	chr10	+	3654	22	FSM	ENSMUSG00000025404.16	ENSMUST00000105249.9	3654	22	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	24.169000591029	1569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGCTGTTTGTTTCACTGT	5190	False	NA	21	True	TATAAA	-37	NA	127280179	127335253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127307636_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
ES_00006297	chr10	+	643	2	FSM	ENSMUSG00000040195.12	ENSMUST00000124388.2	695	2	52	0	9	0	multi-exon	FALSE	canonical	1	3	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCGCAGCCAGAGCAGC	1327	False	NA	NA	False	NA	NA	NA	127503043	127504720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127503253_127504286
ES_00006298	chr10	+	3025	24	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	1644	9	1644	-4	3prime_fragment	FALSE	canonical	2	6	junction_6	3.36837286056462	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGATACATATGCGTAT	NA	False	NA	13	True	AATAAA	-19	NA	127542682	127556800	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_127542794_127542995_127543043_127543222_127543287_127543486_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380_127554516_127555119_127555227_127555501_127555635_127555736_127555890_127556021_127556150_127556461
ES_00006299	chr10	+	370	2	FSM	ENSMUSG00000025395.15	ENSMUST00000135580.2	760	2	0	390	0	-390	multi-exon	FALSE	canonical	3	691	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGGGAAAGACCCCC	5768	False	NA	NA	False	AAAAAG	-39	NA	127855824	127857600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127856136_127857541
ES_00006300	chr10	+	1559	7	FSM	ENSMUSG00000071072.13	ENSMUST00000084771.3	1559	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	1337.80347543609	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGGAAGATTTCTTGG	903	False	NA	-1	True	TTTAAA	-22	NA	127894879	127912847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127910090_127910154_127911206_127911232_127911935
ES_00006301	chr10	+	8475	30	NNC	ENSMUSG00000040054.18	novel	8372	30	NA	NA	-70	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	150.925106041935	146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	0	True	AATAAA	-20	NA	127928581	127965172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_127928720_127932307_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959894_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961889_127962111_127962194_127962339_127962456
ES_00006302	chr10	+	8416	30	NNC	ENSMUSG00000040054.18	novel	8369	30	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	129.360036429224	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	0	True	AATAAA	-20	NA	127928660	127965172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_+_127928720_127932248_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961889_127962111_127962194_127962339_127962456
ES_00006304	chr10	+	1470	11	FSM	ENSMUSG00000044005.14	ENSMUST00000135441.2	1529	11	59	0	59	0	multi-exon	FALSE	canonical	3	100	junction_6	5.46351535185909	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTTATTTTATATTTT	92	False	NA	13	True	AATAAA	-19	NA	128039691	128045811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
ES_00006305	chr10	+	2144	4	FSM	ENSMUSG00000025389.8	ENSMUST00000026455.8	2144	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTTAAGACTTTGGAAT	364	False	NA	NA	False	AATAAA	-19	NA	128061706	128067681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128062111_128062916_128063082_128063501_128063583_128066187
ES_00006314	chr10	+	4372	14	ISM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	15216	0	309	0	intron_retention	FALSE	canonical	3	93	junction_8	11.7503619483469	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTGGGTGCCTCTGT	6990	False	NA	46	True	TATAAA	-19	NA	128310378	128326041	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_+_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802
ES_00006317	chr10	+	1132	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	24	0	24	0	multi-exon	FALSE	canonical	3	93	junction_1	117	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128584347	128602428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_+_128584436_128601015_128601110_128601478
ES_00006324	chr10	-	1797	13	ISM	ENSMUSG00000096054.4	ENSMUST00000214945.2	2726	17	786	7534	-4	-7534	internal_fragment	FALSE	canonical	2	6	junction_11	2.27760839478607	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAATGGGATCCCGATGC	NA	False	NA	NA	False	AATACA	-45	NA	5500696	5318242	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_5318305_5353840_5354006_5355424_5355563_5359763_5359872_5366789_5366900_5370379_5370577_5374203_5374383_5375667_5375761_5386738_5386823_5393139_5393236_5406806_5406869_5491947_5492213_5500458
ES_00006325	chr10	-	4180	5	FSM	ENSMUSG00000019775.18	ENSMUST00000131996.8	8107	5	41	3886	21	2620	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGAACATTTATTAGTGC	NA	False	NA	NA	False	NA	NA	NA	5872345	5779548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_5783142_5791271_5791507_5792535_5792626_5812518_5812663_5872227
ES_00006326	chr10	-	429	1	FSM	ENSMUSG00000087350.2	ENSMUST00000131528.2	730	1	296	5	296	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGCCTTGAAGAGTAACA	NA	False	NA	NA	False	NA	NA	NA	7482281	7481852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7481900_7482300
ES_00006327	chr10	-	1073	7	FSM	ENSMUSG00000019795.18	ENSMUST00000161428.8	1073	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	348.511477572834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7524919	7513493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_7513990_7514631_7514760_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814
ES_00006328	chr10	-	2133	3	FSM	ENSMUSG00000019832.6	ENSMUST00000019974.5	2149	3	12	4	12	-4	multi-exon	FALSE	canonical	1	1	junction_1	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGATTTGTCACTTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	10433997	10420749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_10422196_10426422_10426701_10433588
ES_00006329	chr10	-	1119	1	FSM	ENSMUSG00000112395.2	ENSMUST00000219635.2	1074	1	-47	2	-47	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAACAACTTCCAACCC	NA	False	NA	NA	False	NA	NA	NA	15397199	15396080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_15396100_15397200
ES_00006330	chr10	-	776	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	-8	0	4	multi-exon	FALSE	canonical	2	9	junction_2	67	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCTGTGTTTTGTCA	NA	False	NA	0	True	AATAAA	-26	NA	17898966	17887003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_17887565_17894586_17894650_17898814
ES_00006331	chr10	-	888	5	FSM	ENSMUSG00000059554.13	ENSMUST00000174592.8	882	5	0	-6	0	0	multi-exon	FALSE	canonical	2	2	junction_4	27.2901080979904	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18103221	18089423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18103178
ES_00006332	chr10	-	1254	4	Antisense	novelGene_ENSMUSG00000039835.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.02768199119819	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTCTTGGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	18379111	18365029	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_18365779_18373841_18373946_18376937_18377052_18378824
ES_00006333	chr10	-	391	2	FSM	ENSMUSG00000020003.17	ENSMUST00000125942.2	587	2	196	0	196	0	multi-exon	FALSE	canonical	3	143	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCATCTGATAAAGACATT	NA	False	NA	NA	False	NA	NA	NA	19745224	19736534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_19736741_19745039
ES_00006334	chr10	-	617	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181677.2	617	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGGGACCCCTAATG	NA	False	NA	NA	False	NA	NA	NA	22024509	21993260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_21993756_22024387
ES_00006335	chr10	-	2192	1	NIC	ENSMUSG00000097327.8	novel	548	2	NA	NA	2117	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGACTGCCTTGGTTTT	NA	False	NA	-8	True	NA	NA	NA	22022392	22020200	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_22020200_22022400
ES_00006336	chr10	-	1195	7	FSM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	96.5702104976248	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607837	22581279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607681
ES_00006337	chr10	-	542	7	NNC	ENSMUSG00000061983.8	novel	490	7	NA	NA	0	15144	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1555.48796380929	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAAGATTCGTTCACAC	NA	False	NA	NA	False	NA	NA	NA	23663100	23645936	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_23645970_23661082_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ES_00006338	chr10	-	3165	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	36.4848305072513	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTCTTCTTTTCTTTCC	NA	False	NA	0	True	AATAAA	-19	NA	25172991	25044987	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_25047147_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
ES_00006339	chr10	-	403	4	NNC	ENSMUSG00000075266.6	novel	1532	3	NA	NA	0	44518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1025.53043185791	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCCCCAATACCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	30076488	30026046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_30026074_30073092_30073223_30074461_30074576_30076356
ES_00006340	chr10	-	419	4	NNC	ENSMUSG00000075266.6	novel	1532	3	NA	NA	0	24482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1025.53043185791	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAATACCCAAGATACA	NA	False	NA	NA	False	NA	NA	NA	30076488	30046082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_30046119_30073085_30073223_30074461_30074576_30076356
ES_00006341	chr10	-	2522	5	FSM	ENSMUSG00000039697.17	ENSMUST00000213889.2	3850	5	1325	3	1325	-1	multi-exon	FALSE	canonical	2	5	junction_1	1.11803398874989	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTCTTTCCTAAAGACT	NA	False	NA	-1	True	AATAAA	-21	NA	30530438	30521580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_30523648_30523962_30524037_30524440_30524537_30528931_30529085_30530306
ES_00006342	chr10	-	857	6	FSM	ENSMUSG00000000296.9	ENSMUST00000215515.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	227.386543137451	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTCTGAATTCTTGT	NA	False	NA	55	True	AATAGA	-19	NA	31321815	31208622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_31208966_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ES_00006344	chr10	-	784	7	NIC	ENSMUSG00000039480.15	novel	761	7	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	39.4883949196892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGCTTCGTAATAC	NA	False	NA	NA	False	AATAAA	-15	NA	34294503	34273063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_34273238_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ES_00006346	chr10	-	1001	1	FSM	ENSMUSG00000111358.2	ENSMUST00000214556.2	999	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCAGTGTTCTAAAATAA	345	False	NA	NA	False	AATAAA	-17	NA	39534422	39533421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_39533400_39534400
ES_00006347	chr10	-	351	1	Genic_Genomic	ENSMUSG00000019838.12	novel	NA	NA	NA	NA	9227	225	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTATTCTTGCTATA	NA	False	NA	NA	False	NA	NA	NA	40009023	40008672	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr10_-_40008700_40009000
ES_00006348	chr10	-	5576	5	NIC	ENSMUSG00000075232.7	novel	1442	7	NA	NA	20	-4	intron_retention	FALSE	canonical	3	426	junction_2	21.5682057668226	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGAAAGTTTTCTGTTTG	NA	False	NA	-9	True	AATAAA	-25	NA	40178162	40163457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_40165466_40166113_40168033_40169159_40170304_40170712_40170800_40177744
ES_00006350	chr10	-	2158	11	NIC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	61.0777373516734	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGAAATATTCTGGGA	367	False	NA	5	True	AATAAA	-26	NA	41685626	41594835	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41685568
ES_00006352	chr10	-	1125	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	10	0	10	0	multi-exon	FALSE	canonical	3	5	junction_2	0.5	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	False	NA	NA	False	AATAAA	-33	NA	41894366	41875803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_41876495_41887763_41888020_41894188
ES_00006354	chr10	-	6841	3	ISM	ENSMUSG00000048756.12	ENSMUST00000105502.8	6848	4	988	-1	932	1	3prime_fragment	FALSE	canonical	3	128	junction_1	3	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGGAGTCTGTCATCA	NA	False	NA	-1	True	AATAAA	-23	NA	42151760	42057835	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_42062292_42072461_42073898_42150811
ES_00006355	chr10	-	2308	12	NIC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_10	11.696577164084	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354408	42188580	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42354258
ES_00006356	chr10	-	891	5	NNC	ENSMUSG00000019797.12	novel	860	4	NA	NA	0	32820	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	385.157354207342	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTAAAACTGTACACGA	NA	False	NA	NA	False	NA	NA	NA	43416964	43368308	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_43368343_43401131_43401405_43406593_43406667_43408671_43409154_43416935
ES_00006357	chr10	-	813	5	NNC	ENSMUSG00000019797.12	novel	860	4	NA	NA	0	16420	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.157354207342	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTTAGATGATCTACA	NA	False	NA	NA	False	NA	NA	NA	43416964	43384708	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_43384741_43401207_43401405_43406593_43406667_43408671_43409154_43416935
ES_00006358	chr10	-	1184	5	NNC	ENSMUSG00000019797.12	novel	860	4	NA	NA	0	5653	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	385.157354207342	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATGACAATTCTTAATG	NA	False	NA	NA	False	NA	NA	NA	43416964	43395475	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_43395499_43400827_43401405_43406593_43406667_43408671_43409154_43416935
ES_00006359	chr10	-	542	1	FSM	ENSMUSG00000019797.12	ENSMUST00000214198.2	2842	1	1153	1147	1153	-1147	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGTAGCTGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	43415809	43415267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_43415300_43415800
ES_00006361	chr10	-	3826	6	NIC	ENSMUSG00000038151.14	novel	4025	7	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	10.8738217752545	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGCTGGGTGGTTCGGTCC	NA	False	NA	-105	True	NA	NA	NA	44404512	44314288	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_44316239_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44404361
ES_00006362	chr10	-	2779	4	NIC	ENSMUSG00000063804.9	novel	2902	4	NA	NA	-44	14	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	24.5130350811336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATCTGGGGTAAAGTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	45362535	45332664	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_45335000_45345132_45345315_45352443_45352493_45362322
ES_00006363	chr10	-	5315	5	ISM	ENSMUSG00000038594.10	ENSMUST00000220376.2	2339	12	57446	-4598	-12229	2	3prime_fragment	FALSE	canonical	3	12	junction_3	2.69258240356725	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTCATGGTGCCTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	53168473	53149536	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_53154341_53157444_53157677_53159932_53160041_53167859_53167911_53168353
ES_00006364	chr10	-	2044	8	ISM	ENSMUSG00000038594.10	ENSMUST00000220443.2	7425	13	67	22774	67	-18172	5prime_fragment	FALSE	canonical	3	8	junction_2	4.15515416349971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGAGGAGGCCGTCCCT	NA	False	NA	NA	False	NA	NA	NA	53255976	53172312	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_53172465_53174148_53174302_53177597_53177778_53188603_53188722_53195693_53195816_53224567_53225356_53234144_53234304_53255604
ES_00006366	chr10	-	218	2	Intergenic	novelGene_290	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCTGGCAAAAAAAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	56185388	56099619	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_56099787_56185337
ES_00006368	chr10	-	6146	3	NIC	ENSMUSG00000057337.14	novel	6108	4	NA	NA	-206	-13	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATGAACATGCCATAAA	NA	False	NA	NA	False	NA	NA	NA	60055288	60017368	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_60022706_60023894_60024141_60054725
ES_00006369	chr10	-	5842	17	NNC	ENSMUSG00000020099.9	novel	5869	17	NA	NA	17	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	0.85695682505013	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCCAGGTCCTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	60667343	60598383	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_60601153_60602758_60602941_60604102_60604268_60604886_60605037_60607956_60608191_60608267_60608437_60609522_60609611_60610131_60610522_60610744_60610940_60612963_60612997_60613168_60613334_60613946_60614115_60614560_60614744_60615446_60615551_60615873_60616018_60618836_60619062_60666865
ES_00006370	chr10	-	217	1	Intergenic	novelGene_302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	61223961	61223744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_61223700_61224000
ES_00006371	chr10	-	2931	38	FSM	ENSMUSG00000058806.16	ENSMUST00000105453.8	2935	38	0	4	0	-4	multi-exon	TRUE	canonical	0	0	junction_35	6.92999535688569	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGATCCTGGTTAATCT	NA	False	NA	-7	True	AATAAA	-10	NA	61814852	61674018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61726986_61727044_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61744460_61744497_61747485_61747513_61755867_61755876_61797067_61797138_61814127
ES_00006372	chr10	-	2574	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	2	50	junction_1	331.182729018287	138	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATCTTGTCATTACAGC	5258	False	NA	-7	True	AATAAA	-13	NA	62322524	62291015	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62292635_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ES_00006373	chr10	-	456	4	FSM	ENSMUSG00000020078.17	ENSMUST00000217868.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	470.412584865669	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACATAGAGTTTGAATAT	5257	False	NA	NA	False	ATTAAA	-26	NA	62322525	62304099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62304234_62305679_62305837_62306838_62306915_62322436
ES_00006374	chr10	-	2439	8	NNC	ENSMUSG00000036955.17	novel	2472	7	NA	NA	0	22110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.5306478239723	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAATAGTTAGTCTTTGG	8264	False	NA	NA	False	NA	NA	NA	62414173	62352294	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62352328_62394251_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177_62406258_62410828_62410928_62413742
ES_00006375	chr10	-	727	5	NIC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	-14	-56	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	110.687341191303	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCAAAGCTACGCCATG	8137	False	NA	NA	False	NA	NA	NA	62486966	62476329	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62476412_62476523_62476642_62479075_62479152_62482692_62482981_62486803
ES_00006376	chr10	-	13001	14	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	0	6032	at_least_one_novel_splicesite	FALSE	non_canonical	1	13	junction_1	64.5642654933689	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGCAGGCAGAGACAGAC	2803	False	NA	NA	False	NA	NA	NA	62723291	62634316	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_62634352_62641978_62649192_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62722950
ES_00006378	chr10	-	3209	6	NIC	ENSMUSG00000047146.18	novel	13986	11	NA	NA	153	-8785	combination_of_known_splicesites	FALSE	canonical	3	8	junction_5	80.0424887169308	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTTTTAATGATAAAAGA	NA	False	NA	NA	False	NA	NA	NA	62728612	62657911	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62728473
ES_00006380	chr10	-	5239	20	FSM	ENSMUSG00000020067.9	ENSMUST00000095580.3	5246	20	15	-8	15	8	multi-exon	TRUE	canonical	1	2	junction_11	6.54919588644307	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCATGTGTGTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	63039716	62951565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680_62957889_62959049_62959177_62961447_62961528_62963406_62963557_62966761_62966984_62970711_62970851_62971486_62972075_62981614_62981988_62983655_62983773_62985801_62985826_62988573_62988716_62998000_62998073_62999291_62999404_63003011_63003064_63005033_63005210_63028165_63029063_63039496
ES_00006383	chr10	-	556	3	NNC	ENSMUSG00000097134.3	novel	388	2	NA	NA	-713	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAACCTCTAACTTTAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	66754231	66751411	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_66751739_66753454_66753610_66754157
ES_00006384	chr10	-	2925	9	FSM	ENSMUSG00000019873.9	ENSMUST00000217841.2	2925	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	70.8762125116742	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGTGATGTGATAAGTA	NA	False	NA	NA	False	NA	NA	NA	66932625	66847450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_66849566_66849866_66849944_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
ES_00006385	chr10	-	1835	5	NNC	ENSMUSG00000075000.12	novel	1813	4	NA	NA	0	12066	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.4008685234718	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAAAACAACCTTAGATC	NA	False	NA	NA	False	NA	NA	NA	67121084	67090401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_67090429_67102472_67103946_67105884_67105926_67111348_67111434_67120875
ES_00006386	chr10	-	291	1	FSM	ENSMUSG00000112273.2	ENSMUST00000219398.2	369	1	71	7	71	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCCTGAGGCGGCGACA	NA	False	NA	NA	False	NA	NA	NA	70341007	70340716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_70340700_70341000
ES_00006387	chr10	-	232	2	NNC	ENSMUSG00000014329.15	novel	5431	21	NA	NA	-61148	41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGTGTCTCATGTTCTC	NA	False	NA	NA	False	NA	NA	NA	70845467	70760890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_70760932_70845276
ES_00006388	chr10	-	207	1	Intergenic	novelGene_323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACTCTTTCATACTGAT	NA	False	NA	NA	False	NA	NA	NA	72133206	72132999	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_72133000_72133200
ES_00006389	chr10	-	203	2	Antisense	novelGene_ENSMUSG00000053830.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACTCTTTCATACTGAT	NA	False	NA	NA	False	NA	NA	NA	72163278	72132999	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_72133177_72163252
ES_00006390	chr10	-	3580	2	Intergenic	novelGene_326	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	75	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAACCACACTGCCAAGT	NA	False	NA	NA	False	NA	NA	NA	74556172	74550531	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_74551462_74553522
ES_00006392	chr10	-	320	3	FSM	ENSMUSG00000020196.11	ENSMUST00000217664.2	341	3	21	0	21	0	multi-exon	FALSE	canonical	2	3	junction_2	53.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTCAGCCTATCACAGC	NA	False	NA	NA	False	NA	NA	NA	75503907	75493629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75493727_75494467_75494632_75503848
ES_00006393	chr10	-	2090	6	FSM	ENSMUSG00000033318.8	ENSMUST00000220440.2	2254	6	19	145	19	-145	multi-exon	FALSE	canonical	1	1	junction_5	18.9567929777165	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGCGCCACCACGCCC	NA	False	NA	NA	False	NA	NA	NA	75673182	75667092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670716_75673048
ES_00006394	chr10	-	916	6	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-943	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	18.9567929777165	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671658	75667678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670237_75671633
ES_00006395	chr10	-	980	6	NNC	ENSMUSG00000033318.8	novel	2254	6	NA	NA	-668	-3	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	16.6805275695944	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTCCTTTTTTTTCTTT	NA	False	NA	-7	True	AATAAA	-18	NA	75671383	75667681	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670242_75671296
ES_00006397	chr10	-	205	2	Antisense	novelGene_ENSMUSG00000082619.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	240	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGGGATCGGGGCTGGC	NA	False	NA	NA	False	TTTAAA	-14	NA	75806365	75791679	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_75791832_75806312
ES_00006398	chr10	-	9345	42	FSM	ENSMUSG00000001151.11	ENSMUST00000001179.7	9331	42	0	-14	0	10	multi-exon	FALSE	canonical	1	2	junction_22	55.1118596417389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCATTCTGTAACTCTT	NA	False	NA	-6	True	AATAAA	-28	NA	76278560	76187086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76215996_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239457_76239479_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ES_00006399	chr10	-	9351	42	FSM	ENSMUSG00000001151.11	ENSMUST00000217838.2	9341	42	0	-10	0	10	multi-exon	FALSE	canonical	1	2	junction_22	52.6752139792264	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCATTCTGTAACTCTT	NA	False	NA	-6	True	AATAAA	-28	NA	76278620	76187086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239457_76239479_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ES_00006401	chr10	-	3954	32	NNC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	138	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.0574116415631	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGCCTCTTTATCTACAAA	8580	False	NA	2	True	AATAAA	-17	NA	76561864	76544623	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549014_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556877_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
ES_00006402	chr10	-	3959	34	NNC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	138	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	12.3589563334811	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGCCTCTTTATCTACAAA	8580	False	NA	2	True	AATAAA	-17	NA	76561864	76544623	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549014_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556840_76556921_76556943_76557096_76557118_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
ES_00006403	chr10	-	476	2	FSM	ENSMUSG00000078444.4	ENSMUST00000105408.4	708	2	232	0	232	0	multi-exon	FALSE	canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAGTTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	77094825	77093609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77093821_77094560
ES_00006404	chr10	-	583	5	FSM	ENSMUSG00000020277.11	ENSMUST00000145716.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	501.579193647424	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAAGTGAGGATCCAT	NA	False	NA	NA	False	NA	NA	NA	77845917	77836513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845838
ES_00006407	chr10	-	1022	2	Intergenic	novelGene_341	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTTTGAACTTGGGTTT	NA	False	NA	NA	False	ATTAAA	-30	NA	78022346	78021255	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_78021605_78021673
ES_00006408	chr10	-	3439	10	FSM	ENSMUSG00000001211.16	ENSMUST00000166360.8	3439	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_9	86.9833246400257	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAATGCTTTTTCTCTT	NA	False	NA	-13	True	AATAAA	-5	NA	78187534	78107396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460
ES_00006409	chr10	-	600	3	FSM	ENSMUSG00000061032.10	ENSMUST00000218962.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_1	74	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGCCCCAGCCTGTCC	3067	False	NA	NA	False	NA	NA	NA	78241572	78240758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78241121_78241248_78241314_78241399
ES_00006410	chr10	-	1377	1	FSM	ENSMUSG00000112017.2	ENSMUST00000217691.2	1379	1	162	-160	162	160	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAATTTTTTAAAAATTCA	NA	False	NA	NA	False	AATAAA	-32	NA	78465972	78464595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78464600_78466000
ES_00006411	chr10	-	2318	7	FSM	ENSMUSG00000005355.10	ENSMUST00000005488.9	2336	7	11	7	11	-1	multi-exon	FALSE	canonical	2	2	junction_1	2.21108319357027	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAATGTGTTAGAATCT	NA	False	NA	NA	False	AGTAAA	-17	NA	78554117	78547831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_78549276_78549823_78549928_78550081_78550232_78550768_78550995_78551094_78551245_78551653_78551721_78553940
ES_00006413	chr10	-	422	2	FSM	ENSMUSG00000020317.15	ENSMUST00000159782.2	472	2	50	0	50	0	multi-exon	FALSE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTGCGTGAATCGAT	NA	False	NA	NA	False	AGTAAA	-17	NA	79415904	79412310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79412601_79415772
ES_00006414	chr10	-	2183	2	FSM	ENSMUSG00000020312.13	ENSMUST00000168116.2	3720	2	1537	0	1537	0	multi-exon	FALSE	canonical	3	24	junction_1	0	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACATGGTTGCTCATAAC	NA	False	NA	NA	False	NA	NA	NA	79457021	79453884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79455934_79456887
ES_00006415	chr10	-	652	6	FSM	ENSMUSG00000020329.13	ENSMUST00000160838.8	652	6	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_5	11.8726576637247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCATAATGTAAATAAATGAA	NA	False	NA	-84	True	NA	NA	NA	79573520	79572040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573344_79573433
ES_00006417	chr10	-	1118	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231004	80228372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
ES_00006418	chr10	-	1530	4	FSM	ENSMUSG00000003346.15	ENSMUST00000191440.7	1529	4	0	-1	0	0	multi-exon	FALSE	canonical	3	337	junction_3	48.5821183381522	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	7815	False	NA	-5	True	ATTAAA	-15	NA	80426158	80419487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80420157_80421441_80421637_80422348_80422865_80426008
ES_00006419	chr10	-	3465	15	NNC	ENSMUSG00000020190.14	novel	3439	14	NA	NA	0	51561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.623011205388	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAAACGAAACCTGCAG	9981	False	NA	NA	False	NA	NA	NA	80512127	80449599	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_80449627_80501161_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511914
ES_00006420	chr10	-	1419	2	FSM	ENSMUSG00000003344.15	ENSMUST00000147162.2	1876	2	462	-5	462	-1	multi-exon	FALSE	canonical	3	442	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTATGTTGTCTGAGT	NA	False	NA	0	True	AATAAA	-25	NA	80480004	80478451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80479526_80479659
ES_00006421	chr10	-	3560	13	ISM	ENSMUSG00000020190.14	ENSMUST00000200082.5	3439	14	14	5	14	0	intron_retention	FALSE	canonical	3	433	junction_2	27.8601417799695	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTCTGTGCAGTGAC	9995	False	NA	-51	True	AATAAA	-9	NA	80512113	80501165	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657
ES_00006423	chr10	-	3349	4	FSM	ENSMUSG00000048240.15	ENSMUST00000092285.10	3362	4	5	8	5	-3	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTCTCGACTCTA	4449	False	NA	-8	True	AATAAA	-11	NA	80850754	80784465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
ES_00006424	chr10	-	1502	9	FSM	ENSMUSG00000020232.18	ENSMUST00000122993.8	1502	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	193.736572115334	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186025	81181884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185437_81185967
ES_00006425	chr10	-	5534	6	ISM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	18760	5	-786	-5	3prime_fragment	FALSE	canonical	2	12	junction_1	7.93977329651168	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTCTCTTGGTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	81244261	81232024	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168
ES_00006427	chr10	-	3436	8	NNC	ENSMUSG00000034781.6	novel	3414	7	NA	NA	0	6560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.901610378021	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATTTTTGAGGGAGAT	4223	False	NA	NA	False	NA	NA	NA	81381024	81357997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81358025_81364562_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
ES_00006428	chr10	-	3455	8	NNC	ENSMUSG00000034781.6	novel	3414	7	NA	NA	-12	6560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.901610378021	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATTTTTGAGGGAGAT	4211	False	NA	NA	False	NA	NA	NA	81381036	81357997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81358026_81364556_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
ES_00006429	chr10	-	2113	8	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	0	117	intron_retention	FALSE	canonical	3	27	junction_7	72.5548349983146	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCACCTTTACCTGCTGA	9709	False	NA	NA	False	NA	NA	NA	81463154	81457501	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462725
ES_00006430	chr10	-	1896	9	NNC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	10	117	intron_retention	FALSE	canonical	1	1	junction_8	76.1518835945638	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCACCTTTACCTGCTGA	9668	False	NA	NA	False	NA	NA	NA	81463621	81457501	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305_81463485_81463588
ES_00006431	chr10	-	735	1	FSM	ENSMUSG00000112697.2	ENSMUST00000218997.2	463	1	-81	-191	-81	191	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATATATAGAAACTTT	4995	False	NA	NA	False	TATAAA	-30	NA	81689193	81688458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81688500_81689200
ES_00006432	chr10	-	2755	4	NNC	ENSMUSG00000096718.3	novel	4067	4	NA	NA	-40	-1277	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	2.35702260395516	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATACTGCCATCCATTT	4806	False	NA	NA	False	AATAAA	-21	NA	81766354	81739021	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_81741500_81742039_81742101_81742300_81742428_81766265
ES_00006433	chr10	-	476	1	FSM	ENSMUSG00000112502.2	ENSMUST00000218136.2	320	1	-101	-55	-101	55	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATTCTATCAGCCAGCA	7547	False	NA	NA	False	AATAAA	-27	NA	81845735	81845259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_81845300_81845700
ES_00006436	chr10	-	2719	21	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	21.7591360122593	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	83484515	83435896	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_83436692_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
ES_00006437	chr10	-	5563	7	FSM	ENSMUSG00000020032.15	ENSMUST00000020220.15	5558	7	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTGTTTCGTTGGTTGTT	NA	False	NA	NA	False	AATAAA	-21	NA	84276461	84206763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84211252_84213955_84214089_84216610_84216731_84228119_84228186_84229855_84230008_84245479_84245601_84275978
ES_00006438	chr10	-	219	2	Antisense	novelGene_ENSMUSG00000060935.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATTATTTAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	84943729	84923372	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_84923541_84943678
ES_00006439	chr10	-	1538	2	FSM	ENSMUSG00000049038.4	ENSMUST00000214607.2	477	2	54	-1115	54	0	multi-exon	FALSE	canonical	3	50	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84962387	84955296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_84956679_84962231
ES_00006442	chr10	-	276	1	FSM	ENSMUSG00000097692.3	ENSMUST00000181665.2	546	1	190	80	190	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGCTCGGCGCGCGACA	NA	False	NA	NA	False	NA	NA	NA	85857999	85857723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_85857700_85858000
ES_00006443	chr10	-	2795	19	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	61	27639	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1306.24197203511	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTCTATGGAAATGAAGC	NA	False	NA	NA	False	NA	NA	NA	86541312	86498433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_86498470_86526703_86526992_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529374_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ES_00006444	chr10	-	3264	17	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	61	0	intron_retention	FALSE	canonical	3	2860	junction_10	341.129717812741	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541312	86526703	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ES_00006446	chr10	-	1355	7	FSM	ENSMUSG00000004359.17	ENSMUST00000133724.8	1356	7	1	0	1	0	multi-exon	FALSE	canonical	1	2	junction_1	228.10280333413	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88518884	88511133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_88511933_88512734_88512828_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88518836
ES_00006447	chr10	-	1138	4	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-79	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_1	207.134416905223	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520956	88511133	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_88511933_88514385_88514499_88515720_88515818_88520827
ES_00006448	chr10	-	244	3	FSM	ENSMUSG00000074802.12	ENSMUST00000219073.2	244	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAGTATTTTTAAGTC	NA	False	NA	NA	False	NA	NA	NA	89279766	89270154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89270242_89272364_89272472_89279716
ES_00006449	chr10	-	200	1	FSM	ENSMUSG00000119673.1	ENSMUST00001239519.1	107	1	18	-111	18	111	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGCTTAGAATACCCAA	2822	False	NA	NA	False	NA	NA	NA	89657290	89657090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89657100_89657300
ES_00006450	chr10	-	1122	1	FSM	ENSMUSG00000112140.2	ENSMUST00000217774.2	1834	1	555	157	555	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGGGTGTGGCCATGAAC	NA	False	NA	NA	False	NA	NA	NA	89970124	89969002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_89969000_89970100
ES_00006451	chr10	-	1366	9	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	0	78675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1546.15409969382	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTGGACCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	90959865	90873760	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_90873788_90952652_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ES_00006452	chr10	-	1590	9	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	0	34911	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1546.15409969382	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAAATATTATAT	NA	False	NA	NA	False	NA	NA	NA	90959865	90917524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_90917559_90952435_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ES_00006453	chr10	-	1953	7	FSM	ENSMUSG00000019961.18	ENSMUST00000099355.12	1953	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	305.633086123432	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTCATTAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	91007414	90984766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ES_00006455	chr10	-	245	3	Antisense	novelGene_ENSMUSG00000110870.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGATGTTTAACCATCAC	7396	False	NA	NA	False	NA	NA	NA	91110808	91049307	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr10_-_91049329_91105836_91105863_91110610
ES_00006456	chr10	-	237	1	FSM	ENSMUSG00000111104.2	ENSMUST00000215367.2	471	1	309	-75	309	75	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGACTCGGATCCACTCC	NA	False	NA	NA	False	NA	NA	NA	92059027	92058790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_92058800_92059000
ES_00006460	chr10	-	8504	4	NNC	ENSMUSG00000020027.19	novel	2222	3	NA	NA	0	3851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.624247456461	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCCCCCTACTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	95252719	95217372	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_95223669_95247365_95248973_95250692_95251054_95252479
ES_00006463	chr10	-	912	1	FSM	ENSMUSG00000112480.2	ENSMUST00000177847.3	889	1	0	-23	0	23	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGGCAATACCAAACAC	NA	False	NA	NA	False	NA	NA	NA	100207995	100207083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100207100_100208000
ES_00006464	chr10	-	296	1	FSM	ENSMUSG00000112777.2	ENSMUST00000166076.3	820	1	622	-98	622	98	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTTCTTTTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	100212519	100212223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_100212200_100212500
ES_00006465	chr10	-	6098	15	NIC	ENSMUSG00000036676.15	novel	5993	14	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	32.357064017564	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCAGCCTGATTGTCTTG	NA	False	NA	-5	True	ATTAAA	-17	NA	100323188	100279769	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100320912_100321048_100323023
ES_00006469	chr10	-	5128	2	FSM	ENSMUSG00000020137.6	ENSMUST00000020346.6	3681	2	-373	-1074	-340	6	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTCATCCCTGTTATT	2020	False	NA	NA	False	ATTAAA	-19	NA	115220688	115204302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_115208852_115220109
ES_00006470	chr10	-	229	3	Intergenic	novelGene_396	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGGTAGCTTTCTCATA	NA	False	NA	NA	False	NA	NA	NA	115817671	115779703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_115779720_115799611_115799628_115817474
ES_00006471	chr10	-	2442	14	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	191.95456809625	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGCTTTGATTTGAAAT	NA	False	NA	1	True	AATAAA	-25	NA	116417393	116321063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
ES_00006473	chr10	-	2029	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACGAATGTGTATATATTA	NA	False	NA	-11	True	AATAAA	-10	NA	116417390	116321415	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ES_00006474	chr10	-	1910	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	39	junction_10	607.165765394152	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899666	116886905	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897198_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ES_00006475	chr10	-	1339	7	FSM	ENSMUSG00000020171.9	ENSMUST00000218887.2	1339	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	133.681212841097	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTGCCTCTTGTGA	3388	False	NA	-13	True	AATAAA	-15	NA	117060395	117051125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056361_117056436_117056504_117058078_117058199_117060163
ES_00006476	chr10	-	6611	11	NNC	ENSMUSG00000055531.13	novel	2227	11	NA	NA	0	29838	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.843102139512	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGACACCCTCTTCTGG	4516	False	NA	NA	False	NA	NA	NA	117212833	117150739	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_117150863_117180573_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ES_00006480	chr10	-	4082	6	FSM	ENSMUSG00000056758.15	ENSMUST00000159699.2	3810	6	-263	-9	-263	9	multi-exon	FALSE	canonical	0	0	junction_1	8.20731381147328	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTCAGTTTCCTTTT	NA	False	NA	-4	True	AATAAA	-29	NA	120312637	120197170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_120200202_120206530_120206631_120210572_120210606_120298568_120298620_120309156_120309244_120311857
ES_00006481	chr10	-	213	2	Intergenic	novelGene_414	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCCCTGCATATATGCT	NA	False	NA	NA	False	NA	NA	NA	121170520	121126042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_121126074_121170338
ES_00006482	chr10	-	221	1	Intergenic	novelGene_416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAAAAAACATTTTCT	NA	False	NA	NA	False	NA	NA	NA	121532101	121531880	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_-_121531900_121532100
ES_00006483	chr10	-	436	2	FSM	ENSMUSG00000034620.18	ENSMUST00000125506.2	519	2	83	0	83	0	multi-exon	FALSE	canonical	3	272	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAGGAGACAAATGAAAGC	NA	False	NA	NA	False	AGTAAA	-42	NA	121925211	121917586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_121917595_121924783
ES_00006484	chr10	-	932	1	FSM	ENSMUSG00000112237.2	ENSMUST00000220378.2	758	1	-181	7	-181	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGAGTGCTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-7	NA	122821917	122820985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_122821000_122821900
ES_00006485	chr10	-	8790	34	NNC	ENSMUSG00000034602.16	novel	5511	34	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_21	28.194425332585	332	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGAGTAGAGTGGTGCT	NA	False	NA	NA	False	ATTAAA	-13	NA	122911930	122827969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866195_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
ES_00006486	chr10	-	865	2	FSM	ENSMUSG00000034602.16	ENSMUST00000219241.2	882	2	17	0	17	0	multi-exon	FALSE	canonical	3	159	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTGGATTTTTATTTT	6375	False	NA	NA	False	NA	NA	NA	122851044	122849229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_122849896_122850845
ES_00006487	chr10	-	385	1	FSM	ENSMUSG00000112632.2	ENSMUST00000218265.2	427	1	0	42	0	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGTATCGCTGAGCAGGT	NA	False	NA	NA	False	NA	NA	NA	126022192	126021807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_126021800_126022200
ES_00006489	chr10	-	2424	14	FSM	ENSMUSG00000019467.16	ENSMUST00000219649.2	2571	14	147	0	-56	0	multi-exon	FALSE	canonical	1	3	junction_12	12.4125342262231	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTTGTTGTCTTGGGA	5067	False	NA	-3	True	AATAAA	-16	NA	127025758	127018393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127025363_127025479_127025735
ES_00006491	chr10	-	4119	13	NIC	ENSMUSG00000025409.15	novel	4165	13	NA	NA	7	1	intron_retention	FALSE	canonical	3	41	junction_4	23.7748408103094	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGACTCTGTACTCATTT	NA	False	NA	-5	True	NA	NA	NA	127124715	127117823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119812_127119911_127120082_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ES_00006493	chr10	-	9267	58	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	48511	-8	9248	8	3prime_fragment	FALSE	canonical	2	12	junction_53	16.2404788973991	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTGCATGCTAATGT	NA	False	NA	NA	False	NA	NA	NA	127408506	127374021	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280_127393431_127393942_127394057_127394404_127394525_127394699_127394829_127394965_127395092_127395836_127396030_127396323_127396529_127399472_127399663_127402325_127402704_127403016_127403142_127403230_127403383_127404221_127404349_127404457_127404588_127404767_127404903_127405152_127405285_127407274_127407410_127407757_127407899_127408285
ES_00006494	chr10	-	1997	11	NNC	ENSMUSG00000040249.16	novel	14888	89	NA	NA	3405	5565	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	5.97411081249754	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGGCCCTGTGGGTATG	NA	False	NA	NA	False	NA	NA	NA	127414349	127408632	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_127408713_127408796_127408972_127409148_127409377_127409840_127409973_127410135_127410381_127410822_127410988_127411152_127411358_127412308_127412507_127412678_127412925_127413856_127414058_127414227
ES_00006496	chr10	-	447	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176683.8	437	4	0	-10	0	10	multi-exon	FALSE	canonical	3	590	junction_3	9065.73447413697	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTTTTTGCGGTTCCTT	NA	False	NA	-8	True	AATAAA	-39	NA	128385031	128383972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr10_-_128384299_128384526_128384550_128384817_128384841_128384956
ES_00006500	chr10	-	855	5	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	8858	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7783.0833382407	4865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCAACAGTTTCGCTTC	NA	False	NA	NA	False	NA	NA	NA	128462393	128451544	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr10_-_128451941_128460404_128460506_128461075_128461207_128461931_128462110_128462344
ES_00006501	chr10	-	1034	3	NIC	ENSMUSG00000025362.7	novel	681	4	NA	NA	1	4	intron_retention	FALSE	canonical	3	11844	junction_2	4779.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGGAGTGTGTTTATGTCG	NA	False	NA	-5	True	NA	NA	NA	128462392	128460398	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr10_-_128461207_128461931_128462110_128462344
ES_00006510	chr10	+	209	1	Intergenic	novelGene_241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTAAGCATTGAAAGT	2578	False	NA	NA	False	NA	NA	NA	11152059	11152268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_11152100_11152300
ES_00006511	chr10	+	279	1	Intergenic	novelGene_242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGACTTCCTGACCACGA	NA	False	NA	NA	False	NA	NA	NA	14442848	14443127	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_14442800_14443100
ES_00006513	chr10	+	1413	1	Intergenic	novelGene_251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTACCCAGCTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	24205423	24206836	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_24205400_24206800
ES_00006517	chr10	+	1656	1	Intergenic	novelGene_259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTACAAAAGTTTCTACAA	NA	False	NA	NA	False	NA	NA	NA	30172778	30174434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_30172800_30174400
ES_00006518	chr10	+	2755	1	Intergenic	novelGene_262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTACCTAGCAAAGTTAATT	NA	False	NA	NA	False	NA	NA	NA	30777439	30780194	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_30777400_30780200
ES_00006520	chr10	+	220	1	Intergenic	novelGene_264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATTTTTTTTCAATCAG	2438	False	NA	NA	False	NA	NA	NA	33236340	33236560	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_33236300_33236600
ES_00006521	chr10	+	209	1	Intergenic	novelGene_266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATTTAAATGTGGCT	NA	False	NA	NA	False	TTTAAA	-6	NA	34097783	34097992	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_34097800_34098000
ES_00006522	chr10	+	210	1	Intergenic	novelGene_277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTATCATTCTTAATCCT	NA	False	NA	NA	False	NA	NA	NA	41280797	41281007	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_41280800_41281000
ES_00006523	chr10	+	200	1	Intergenic	novelGene_284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTCTAGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	44610750	44610950	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_44610800_44611000
ES_00006524	chr10	+	211	1	Intergenic	novelGene_293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCTTCACATCACCTTGA	613	False	NA	NA	False	NA	NA	NA	58609733	58609944	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_58609700_58609900
ES_00006525	chr10	+	229	1	Intergenic	novelGene_304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGTCAACTAGTTATTA	NA	False	NA	NA	False	NA	NA	NA	62205601	62205830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62205600_62205800
ES_00006527	chr10	+	228	1	Intergenic	novelGene_310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATAGGTTTCTAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	62736992	62737220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_62737000_62737200
ES_00006528	chr10	+	206	1	Intergenic	novelGene_317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTATAACTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	67906652	67906858	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_67906700_67906900
ES_00006529	chr10	+	708	1	Intergenic	novelGene_329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	969	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTAAAAGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	75424036	75424744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75424000_75424700
ES_00006530	chr10	+	320	1	Intergenic	novelGene_332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTGCAGTCCGAGATTT	NA	False	NA	NA	False	NA	NA	NA	75454498	75454818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75454500_75454800
ES_00006531	chr10	+	365	1	Intergenic	novelGene_335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCAGTCAGTGCTCTTA	5867	False	NA	NA	False	NA	NA	NA	75770327	75770692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_75770300_75770700
ES_00006532	chr10	+	306	1	Intergenic	novelGene_339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAACTCTTATAAGGAC	NA	False	NA	NA	False	NA	NA	NA	76289505	76289811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_76289500_76289800
ES_00006533	chr10	+	202	1	Intergenic	novelGene_348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCCTGTTTCAATGACT	2192	False	NA	NA	False	NA	NA	NA	79706697	79706899	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79706700_79706900
ES_00006534	chr10	+	258	1	Intergenic	novelGene_349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCTTTGGGGGAG	1732	False	NA	NA	False	NA	NA	NA	79876242	79876500	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79876200_79876500
ES_00006535	chr10	+	203	1	Intergenic	novelGene_351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGATCTCATGTAGACCGG	6755	False	NA	NA	False	NA	NA	NA	79897665	79897868	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_79897700_79897900
ES_00006536	chr10	+	203	1	Intergenic	novelGene_357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGGGACTGTCTTAAAC	NA	False	NA	NA	False	NA	NA	NA	80853695	80853898	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_80853700_80853900
ES_00006538	chr10	+	225	1	Intergenic	novelGene_375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	435	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTCACTTTTCAATTTT	NA	False	NA	NA	False	AAGAAA	-25	NA	87960073	87960298	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_87960100_87960300
ES_00006539	chr10	+	211	1	Intergenic	novelGene_376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTGTTTTAATTCAC	NA	False	NA	NA	False	NA	NA	NA	88472579	88472790	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_88472600_88472800
ES_00006540	chr10	+	1116	1	Intergenic	novelGene_377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGATGGTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	88484046	88485162	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_88484000_88485200
ES_00006541	chr10	+	200	1	Intergenic	novelGene_378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGGCTTAAGGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	89637657	89637857	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_89637700_89637900
ES_00006542	chr10	+	672	1	Intergenic	novelGene_380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCACTAATATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	89966928	89967600	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_89966900_89967600
ES_00006543	chr10	+	697	1	Intergenic	novelGene_381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAGGGGGAATTTA	NA	False	NA	NA	False	NA	NA	NA	93621216	93621913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_93621200_93621900
ES_00006544	chr10	+	209	1	Intergenic	novelGene_386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGATTTTCTTTATCTCG	NA	False	NA	NA	False	NA	NA	NA	95340910	95341119	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_95340900_95341100
ES_00006545	chr10	+	205	1	Intergenic	novelGene_402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTATTTGTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	117436411	117436616	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_117436400_117436600
ES_00006547	chr10	+	219	1	Intergenic	novelGene_406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCGGGAGAGAAAGGGTTTA	NA	False	NA	NA	False	NA	NA	NA	120039856	120040075	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_120039900_120040100
ES_00006548	chr10	+	229	1	Intergenic	novelGene_415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGGACCTTTGGAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	121351046	121351275	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_121351000_121351300
ES_00006549	chr10	+	253	1	Intergenic	novelGene_417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTGAAGTGGTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	122626728	122626981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_122626700_122627000
ES_00006550	chr10	+	209	1	Intergenic	novelGene_427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTTTAATAATAAATAAAT	5549	False	NA	NA	False	ATTAAA	-5	NA	128020790	128020999	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr10_+_128020800_128021000
ES_00006559	chr11	+	3565	18	FSM	ENSMUSG00000020454.18	ENSMUST00000020734.11	3565	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	69.1571601699214	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3573	False	NA	7	True	ATTAAA	-23	NA	3152391	3194581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3152557_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ES_00006560	chr11	+	3614	19	FSM	ENSMUSG00000020454.18	ENSMUST00000110049.8	3614	19	0	0	0	0	multi-exon	TRUE	canonical	3	81	junction_10	64.4808326386825	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGGTACTGTGTTTATT	3844	False	NA	14	True	ATTAAA	-30	NA	3152662	3194588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3183987_3184060_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ES_00006561	chr11	+	3796	19	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	67.055647611094	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTGGTACTGTGTTTA	3855	False	NA	12	True	ATTAAA	-28	NA	3152673	3194586	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3183987_3184060_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ES_00006562	chr11	+	3528	18	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	53.324624433129	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGGTACTGTGTTTATT	3858	False	NA	14	True	ATTAAA	-30	NA	3152676	3194588	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ES_00006563	chr11	+	3776	18	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	-48	-2	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	56.8118974819688	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACGATATGGCTGGTACT	3796	False	NA	5	True	ATTAAA	-21	NA	3152614	3194579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ES_00006564	chr11	+	3712	18	FSM	ENSMUSG00000020454.18	ENSMUST00000110048.8	3712	18	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	69.9066109610197	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGTACTGTGTTTAT	4202	False	NA	13	True	ATTAAA	-29	NA	3153020	3194587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3153327_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ES_00006567	chr11	+	3942	6	NIC	ENSMUSG00000020453.18	novel	3173	5	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_5	192.475868617341	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5180	False	NA	14	True	ATTAAA	-16	NA	3239166	3259083	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_3239348_3239868_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
ES_00006568	chr11	+	1858	4	FSM	ENSMUSG00000020453.18	ENSMUST00000101644.10	1853	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	21	junction_1	164.248456782874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5175	False	NA	14	True	ATTAAA	-16	NA	3239161	3259083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3239348_3243279_3243344_3249033_3249206_3257647
ES_00006569	chr11	+	844	3	FSM	ENSMUSG00000020453.18	ENSMUST00000144396.8	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCTTAATTGGGCGGGA	5215	False	NA	NA	False	GGGGCT	-11	NA	3239201	3245089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3239348_3243279_3243344_3244455
ES_00006570	chr11	+	1904	6	FSM	ENSMUSG00000020453.18	ENSMUST00000134089.8	1904	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	36.2513448026415	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5294	False	NA	14	True	ATTAAA	-16	NA	3239280	3259083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3239348_3243279_3243344_3244455_3244548_3249033_3249206_3256287_3256361_3257647
ES_00006571	chr11	+	2930	3	FSM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	176	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGCTTTGTGTGTTTT	6006	False	NA	NA	False	GATAAA	-17	NA	3239992	3245429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3241885_3243279_3243344_3244455
ES_00006572	chr11	+	3702	5	FSM	ENSMUSG00000020453.18	ENSMUST00000110043.8	3702	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	207.771960331513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6006	False	NA	14	True	ATTAAA	-16	NA	3239992	3259083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256222_3256361_3257647
ES_00006573	chr11	+	3912	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	-794	0	-348	0	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5658	False	NA	14	True	ATTAAA	-16	NA	3239644	3259083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
ES_00006574	chr11	+	3912	5	FSM	ENSMUSG00000020453.18	ENSMUST00000093402.12	3173	5	-739	0	-275	0	multi-exon	FALSE	canonical	0	0	junction_4	189.564467925822	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5731	False	NA	14	True	ATTAAA	-16	NA	3239717	3259083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
ES_00006575	chr11	+	2029	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	537	7	130	-7	multi-exon	FALSE	canonical	2	3	junction_1	4.60434577328853	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCACCTTTTTTGTGGT	NA	False	NA	NA	False	TATAAA	-18	NA	3280937	3292964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
ES_00006576	chr11	+	668	5	FSM	ENSMUSG00000034614.15	ENSMUST00000138907.8	668	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.33936116655298	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGAGGGCAGCACCCTC	NA	False	NA	NA	False	AAAACA	-37	NA	3282108	3291674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3282229_3283208_3283413_3283504_3283584_3285718_3285832_3291522
ES_00006577	chr11	+	220	1	Intergenic	novelGene_434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	540	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGCTTCTTAAAGACCC	NA	False	NA	NA	False	NA	NA	NA	3424404	3424624	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_3424400_3424600
ES_00006578	chr11	+	722	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	-15	0	-15	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464851	3467351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
ES_00006579	chr11	+	5656	26	FSM	ENSMUSG00000034543.16	ENSMUST00000096441.5	5656	26	0	0	0	0	multi-exon	FALSE	canonical	2	298	junction_20	51.0520361983731	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGCGTTCAGTACATTC	NA	False	NA	75	True	TATAAA	-16	NA	3599190	3640477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
ES_00006580	chr11	+	6224	25	ISM	ENSMUSG00000034543.16	ENSMUST00000096441.5	5656	26	60	107	60	0	intron_retention	FALSE	canonical	2	298	junction_20	48.8010238679021	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGCCCTGCATTTTTA	NA	False	NA	24	True	CATAAA	-17	NA	3599250	3640370	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110
ES_00006582	chr11	+	5626	26	NNC	ENSMUSG00000034543.16	novel	5656	26	NA	NA	33	0	intron_retention	FALSE	canonical	2	109	junction_20	77.0319414269172	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGCGTTCAGTACATTC	NA	False	NA	75	True	TATAAA	-16	NA	3599223	3640477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634749_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
ES_00006587	chr11	+	226	1	Intergenic	novelGene_438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTTGATCAAACATAGCAA	NA	False	NA	NA	False	NA	NA	NA	3893034	3893260	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_3893000_3893300
ES_00006588	chr11	+	1003	1	FSM	ENSMUSG00000082816.2	ENSMUST00000122352.2	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTGGCCACCCACCC	6390	False	NA	NA	False	NA	NA	NA	3901713	3902716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3901700_3902700
ES_00006589	chr11	+	2911	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTGCTGCCCATTATTG	NA	False	NA	NA	False	NA	NA	NA	3913974	3930004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ES_00006591	chr11	+	234	1	FSM	ENSMUSG00000084170.2	ENSMUST00000121403.2	349	1	20	95	20	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	4617	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCTAGCTGAAGAATACT	NA	False	NA	NA	False	NA	NA	NA	3952476	3952710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3952500_3952700
ES_00006592	chr11	+	2964	12	FSM	ENSMUSG00000019368.14	ENSMUST00000019512.8	2956	12	-8	0	-8	0	multi-exon	FALSE	canonical	3	10	junction_7	3.13603423830188	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	3981774	3998024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3993286_3993371_3993652_3993760_3993832_3993973_3994063_3994234_3996212
ES_00006593	chr11	+	1898	9	FSM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	-24	0	-24	0	multi-exon	FALSE	canonical	3	21	junction_6	6.41165930161608	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTGTTAAGACATAA	7826	False	NA	NA	False	AATAAA	-19	NA	4085177	4091172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
ES_00006594	chr11	+	1960	8	NIC	ENSMUSG00000003581.15	novel	1874	9	NA	NA	-5	5	intron_retention	FALSE	canonical	3	22	junction_1	6.01698276818648	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTAAGACATAAATCTG	7845	False	NA	NA	False	AATAAA	-24	NA	4085196	4091177	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4090079_4090297_4090401_4090486
ES_00006596	chr11	+	4920	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTCCATTATCCTCATC	NA	False	NA	46	True	TATAAA	-15	NA	4110349	4132541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
ES_00006598	chr11	+	1957	9	FSM	ENSMUSG00000034412.14	ENSMUST00000041042.13	1957	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTGTATAGTTAGGAC	1549	False	NA	24	True	AATAAA	-15	NA	4136788	4165505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ES_00006603	chr11	+	4100	3	FSM	ENSMUSG00000034394.15	ENSMUST00000040750.4	3798	3	-302	0	-3	0	multi-exon	FALSE	canonical	3	7	junction_1	5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTGGAGTGCATTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4216792	4222514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4217120_4218183_4218366_4218923
ES_00006606	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ES_00006607	chr11	+	783	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	277	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ES_00006610	chr11	+	3961	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	65	59	-23	3	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGCCAGTGTGTCAGG	NA	False	NA	NA	False	AATAAA	-20	NA	4936888	4992732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
ES_00006615	chr11	+	1903	8	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	61	-27	intron_retention	FALSE	canonical	3	20	junction_2	83.9854214754452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAATAAAAGCTGATTT	NA	False	NA	-11	True	NA	NA	NA	5049333	5056064	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_5049478_5049747_5049899_5050384_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432
ES_00006616	chr11	+	1796	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	-6	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049432	5056091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
ES_00006617	chr11	+	1805	9	NIC	ENSMUSG00000034175.14	novel	1790	9	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	90.3074609320847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAACCTGGTCTCCTGAGT	NA	False	NA	13	True	AATAAA	-14	NA	5049432	5056088	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_5049567_5049747_5049899_5050384_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
ES_00006619	chr11	+	1627	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	-16	0	-16	0	multi-exon	FALSE	canonical	3	5	junction_1	73.7707424998528	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5050140	5056091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ES_00006624	chr11	+	444	1	FSM	ENSMUSG00000081021.2	ENSMUST00000120982.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAAGCCTCGAAGCCAG	9977	False	NA	NA	False	NA	NA	NA	5584138	5584582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_5584100_5584600
ES_00006626	chr11	+	1851	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	-5	0	-5	0	multi-exon	FALSE	canonical	3	68	junction_2	16.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTGTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	5712123	5731876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_5712241_5715508_5715572_5730205
ES_00006627	chr11	+	2088	5	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	0	2835	0	-1	5prime_fragment	FALSE	canonical	3	13	junction_2	33.1313673125635	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTTGTTGTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	5712149	5731875	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205
ES_00006628	chr11	+	1692	4	NIC	ENSMUSG00000083844.9	novel	1840	7	NA	NA	0	289	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	40.7130882586369	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGTATATGAGCACAC	NA	False	NA	NA	False	NA	NA	NA	5712149	5734999	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_5712241_5715508_5715572_5730205_5730636_5733891
ES_00006631	chr11	+	2381	13	FSM	ENSMUSG00000020476.15	ENSMUST00000020769.14	1638	13	-48	-695	-14	21	multi-exon	FALSE	canonical	3	30	junction_7	109.921057531707	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCGTGCATTTCAGTTT	NA	False	NA	19	True	TATAAA	-20	NA	5738473	5750983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747274_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ES_00006632	chr11	+	2303	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	-8	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	False	NA	-2	True	NA	NA	NA	5738521	5750962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ES_00006636	chr11	+	885	2	FSM	ENSMUSG00000020456.18	ENSMUST00000125929.2	779	2	-55	-51	-47	51	multi-exon	FALSE	canonical	3	605	junction_1	0	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCACTTTTTTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	6241585	6247728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6241694_6246951
ES_00006638	chr11	+	4115	23	NIC	ENSMUSG00000020456.18	novel	4075	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_4	180.942853176638	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241632	6306642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266764_6266856_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ES_00006640	chr11	+	4372	23	NIC	ENSMUSG00000020456.18	novel	702	3	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	139.064294839378	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241985	6306642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_6242292_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ES_00006641	chr11	+	4114	23	FSM	ENSMUSG00000020456.18	ENSMUST00000081894.5	4114	23	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	219.699273237662	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTTGCATTGCATCGG	243	False	NA	-36	True	AAAAAG	-19	NA	6242604	6306592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6242715_6246951_6247200_6263787_6263980_6266764_6266856_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ES_00006643	chr11	+	4009	20	NIC	ENSMUSG00000041164.16	novel	4116	20	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	82.0795843784869	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTCAGGATATCCCT	4634	False	NA	15	True	AATAAA	-18	NA	6339084	6356158	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346327_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ES_00006645	chr11	+	4216	20	FSM	ENSMUSG00000041164.16	ENSMUST00000012612.11	4199	20	-17	0	-17	0	multi-exon	FALSE	canonical	3	175	junction_1	53.7737643143183	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTCAGGATATCCCT	4896	False	NA	15	True	AATAAA	-18	NA	6339346	6356158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6339514_6345124_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ES_00006648	chr11	+	975	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	41	154	41	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGCGTCCCTACCCCAT	NA	False	NA	NA	False	NA	NA	NA	6365483	6369663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ES_00006649	chr11	+	1056	4	FSM	ENSMUSG00000071866.13	ENSMUST00000137829.8	677	4	-227	-152	206	0	multi-exon	FALSE	canonical	3	36680	junction_3	786.740674484858	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	0	True	AATAAA	-17	NA	6365648	6369815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6365980_6368100_6368315_6369112_6369286_6369477
ES_00006650	chr11	+	969	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	-221	-2	206	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	6689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	NA	False	NA	2	True	AATAAA	-19	NA	6365648	6369817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ES_00006651	chr11	+	3085	4	FSM	ENSMUSG00000071866.13	ENSMUST00000155824.2	2853	4	-227	-5	206	0	multi-exon	FALSE	canonical	3	36680	junction_3	513.872444181325	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	NA	False	NA	2	True	AATAAA	-19	NA	6365648	6369817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6368132_6368225_6368315_6369112_6369286_6369477
ES_00006657	chr11	+	1277	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068102	9086164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ES_00006659	chr11	+	1252	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068506	9086167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ES_00006682	chr11	+	2827	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151431	20176856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ES_00006687	chr11	+	4273	23	FSM	ENSMUSG00000020128.16	ENSMUST00000109578.8	4273	23	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	56.2718460791631	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAAAGGCAACTTTTT	NA	False	NA	19	True	AATAAA	-15	NA	21189280	21271122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_21189372_21213198_21213355_21214665_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
ES_00006690	chr11	+	3413	2	FSM	ENSMUSG00000020128.16	ENSMUST00000153159.2	3591	2	178	0	178	0	multi-exon	FALSE	canonical	3	339	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACTTATGCAACTACTA	5083	False	NA	-2	True	AATAAA	-11	NA	21264258	21270537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_21266887_21269752
ES_00006702	chr11	+	12200	80	FSM	ENSMUSG00000056342.17	ENSMUST00000180046.8	12200	80	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_12	29.5306499314007	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGTGTTCTGGGGAAAA	321	False	NA	NA	False	NA	NA	NA	23256894	23440560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_23257017_23270660_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586_23311717_23312576_23312613_23313057_23313189_23313790_23314513_23317338_23317554_23320238_23320355_23320443_23320572_23323320_23323411_23325000_23325097_23327554_23327638_23331224_23331380_23332553_23332668_23334400_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524_23404677_23407797_23407847_23407931_23408037_23408114_23408160_23409123_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
ES_00006705	chr11	+	4439	24	FSM	ENSMUSG00000056342.17	ENSMUST00000130131.2	4439	24	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	16.3967814629593	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCGAATGATACATCGAT	NA	False	NA	NA	False	NA	NA	NA	23370054	23406686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524
ES_00006710	chr11	+	2731	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	-7	0	-7	0	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTAGTCATTAACACCC	NA	False	NA	13	True	AATAAA	-15	NA	26336127	26421876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ES_00006714	chr11	+	2517	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	-107	0	-107	0	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTATTCTTACTT	NA	False	NA	NA	False	AATAAA	-19	NA	29122782	29159641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
ES_00006715	chr11	+	5146	16	FSM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	-21	0	-21	0	multi-exon	FALSE	canonical	3	241	junction_14	38.0796825383593	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACGTGTTTTAATCACTA	NA	False	NA	23	True	AATAAA	-35	NA	29122868	29170797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
ES_00006721	chr11	+	2437	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	-12	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476435	29495279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ES_00006722	chr11	+	4618	9	FSM	ENSMUSG00000020458.17	ENSMUST00000102843.10	4618	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	355.342066711781	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29642946	29692916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29643694_29655534_29655592_29656409_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ES_00006723	chr11	+	2257	8	FSM	ENSMUSG00000020458.17	ENSMUST00000102842.10	2257	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	364.665796116311	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29642946	29692916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29643694_29655534_29655592_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ES_00006725	chr11	+	3982	9	FSM	ENSMUSG00000020458.17	ENSMUST00000102841.8	4060	9	78	0	78	0	multi-exon	FALSE	canonical	0	0	junction_2	396.201653202003	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29643851	29692916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29643963_29655534_29655592_29656409_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ES_00006726	chr11	+	1659	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	114	0	114	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29668676	29692916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ES_00006727	chr11	+	6496	47	FSM	ENSMUSG00000040850.18	ENSMUST00000041231.14	6491	47	-5	0	-5	0	multi-exon	TRUE	canonical	2	239	junction_13	60.0854464039772	718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGATTGTTTTTTA	NA	False	NA	17	True	AATAAA	-19	NA	30721720	30830361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_30722225_30741091_30741233_30741921_30742039_30752813_30752859_30754289_30754440_30754962_30755027_30756254_30756330_30757702_30757826_30759835_30759929_30760782_30761049_30761977_30762165_30763662_30763753_30765227_30765293_30765557_30765709_30767730_30767830_30768088_30768159_30769003_30769072_30769927_30770144_30770915_30771074_30773058_30773155_30780349_30780406_30782133_30782191_30782388_30782445_30782531_30782631_30784085_30784149_30784273_30784370_30785335_30785468_30787281_30787492_30788884_30789022_30791568_30791623_30791990_30792121_30793506_30793589_30795179_30795334_30795827_30795898_30797397_30797524_30798046_30798200_30800602_30800708_30801142_30801235_30802672_30802805_30803176_30803386_30806029_30806116_30811347_30811477_30815433_30815590_30824117_30824281_30826745_30826880_30828378_30828518_30829663
ES_00006738	chr11	+	693	3	FSM	ENSMUSG00000069919.8	ENSMUST00000093209.4	699	3	6	0	6	0	multi-exon	FALSE	canonical	1	2	junction_2	1	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCCTGAGTAGGAAGA	7003	False	NA	NA	False	NA	NA	NA	32233516	32234465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_32233802_32233923_32234129_32234262
ES_00006741	chr11	+	5044	19	FSM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	-18	0	-18	0	multi-exon	TRUE	canonical	3	12	junction_8	17.3190824607989	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAAGCACTGTTGTTC	NA	False	NA	1	True	AATAAA	-12	NA	32483286	32574587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32548438_32548985_32550740_32550872_32553666_32553791_32554120_32554301_32560632_32560726_32562670_32562801_32563461_32563587_32564524_32564714_32565780_32565907_32567848_32567963_32572423
ES_00006743	chr11	+	2447	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26178	5	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	21.9696760710454	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCACTGTTGTTCTTTCT	1703	False	NA	6	True	AATAAA	-17	NA	32564772	32574592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_32564811_32565780_32565907_32567848_32567963_32572423
ES_00006745	chr11	+	3970	12	NIC	ENSMUSG00000020271.18	novel	3938	13	NA	NA	7	-1	combination_of_known_splicesites	FALSE	canonical	3	198	junction_1	77.7587921206735	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTGTCACATTTC	NA	False	NA	3	True	AATAAA	-14	NA	32592730	32696788	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_32592936_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ES_00006747	chr11	+	4073	13	NIC	ENSMUSG00000020271.18	novel	3938	13	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	145.006225919978	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTCTGTCACATTTCT	NA	False	NA	4	True	AATAAA	-15	NA	32592785	32696789	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_32592936_32602747_32602905_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ES_00006748	chr11	+	3938	13	FSM	ENSMUSG00000020271.18	ENSMUST00000093205.13	3938	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	161.315167710086	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTCTGTCACATTTCT	NA	False	NA	4	True	AATAAA	-15	NA	32592865	32696789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_32592936_32630200_32630303_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ES_00006749	chr11	+	4028	14	FSM	ENSMUSG00000020271.18	ENSMUST00000076383.8	4019	14	-9	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	161.467713445156	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTTGTCTTGCCAGGA	NA	False	NA	31	True	AATAAA	-42	NA	32592865	32696816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_32592936_32630200_32630303_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ES_00006754	chr11	+	974	9	FSM	ENSMUSG00000056427.11	ENSMUST00000124438.2	1218	9	44	200	44	-200	multi-exon	FALSE	canonical	1	4	junction_3	2.02715934252836	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATCAGGTTATGGGAGCG	NA	False	NA	NA	False	NA	NA	NA	35435555	35503263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_35435628_35455451_35455524_35461394_35461559_35469792_35469935_35479759_35479832_35485788_35485861_35490242_35490315_35501418_35501563_35503099
ES_00006758	chr11	+	1322	5	NNC	ENSMUSG00000020328.11	novel	1577	4	NA	NA	0	72977	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	503.511854378822	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACCCAGGAAAGTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	40624772	40703850	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985_40630870_40703822
ES_00006764	chr11	+	804	1	NIC	ENSMUSG00000086475.2	novel	375	3	NA	NA	264	-1192	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTGTGTGTTTTTGT	NA	False	NA	NA	False	AAGAAA	-29	NA	41109927	41110731	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_41109900_41110700
ES_00006772	chr11	+	3637	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-15	3	0	-3	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCCATGAGTTGTTTGA	NA	False	NA	NA	False	AATAAA	-17	NA	43324570	43338805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ES_00006780	chr11	+	3421	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109260.3	3398	12	-23	0	-23	0	multi-exon	FALSE	canonical	3	378	junction_6	52.2164914894813	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	45742767	45801452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798720_45798872_45799767
ES_00006781	chr11	+	3492	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109261.11	3452	12	-40	0	-40	0	multi-exon	FALSE	canonical	3	124	junction_10	116.535881042055	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	45742750	45801452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798666_45798872_45799767
ES_00006786	chr11	+	1196	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	-3	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	179.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327775	46332354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_46327837_46330632_46330803_46331389
ES_00006787	chr11	+	2345	2	FSM	ENSMUSG00000020397.16	ENSMUST00000170928.8	2390	2	-12	57	0	-57	multi-exon	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTCTCATATATGAACAA	NA	False	NA	NA	False	NA	NA	NA	46327775	46333491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_46328019_46331389
ES_00006788	chr11	+	2490	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	0	57	0	-57	multi-exon	FALSE	canonical	3	262	junction_1	137	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTCTCATATATGAACAA	NA	False	NA	NA	False	NA	NA	NA	46327800	46333491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_46328019_46330632_46330803_46331389
ES_00006792	chr11	+	1542	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	0	0	0	0	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ES_00006795	chr11	+	4141	4	FSM	ENSMUSG00000046311.14	ENSMUST00000109198.8	3872	4	-13	-256	-13	0	multi-exon	FALSE	canonical	3	79	junction_1	17.4547032821147	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATAGTAGAGAGTCATT	1153	False	NA	31	True	AATAAA	-40	NA	49094105	49109636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105890
ES_00006798	chr11	+	2732	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	-4	1	-4	-1	multi-exon	TRUE	canonical	3	40	junction_1	25.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTGTGTGTCCTAG	NA	False	NA	NA	False	AATAAA	-26	NA	49141334	49153856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49141483_49142376_49142502_49151397
ES_00006802	chr11	+	4697	12	FSM	ENSMUSG00000020366.19	ENSMUST00000164643.8	4682	12	-15	0	-15	0	multi-exon	FALSE	canonical	3	84	junction_11	90.1850256027862	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737562	49777248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773968
ES_00006803	chr11	+	4690	12	FSM	ENSMUSG00000020366.19	ENSMUST00000178543.8	4677	12	-13	0	-13	0	multi-exon	FALSE	canonical	3	70	junction_7	121.043192891854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737564	49777248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ES_00006804	chr11	+	4697	12	FSM	ENSMUSG00000020366.19	ENSMUST00000109179.9	4682	12	-15	0	-15	0	multi-exon	FALSE	canonical	3	70	junction_7	138.247771341862	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737562	49777248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773968
ES_00006806	chr11	+	1245	6	FSM	ENSMUSG00000020366.19	ENSMUST00000148274.8	1245	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_5	26.8029849084015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTCATGTGATTATTTA	NA	False	NA	NA	False	AATAAA	-21	NA	49737719	49764224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560
ES_00006808	chr11	+	1752	8	FSM	ENSMUSG00000020376.18	ENSMUST00000054684.14	1415	8	-342	5	-342	0	multi-exon	FALSE	canonical	3	67	junction_7	82.1161447249552	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGCCAGCGTGTGTTT	NA	False	NA	24	True	NA	NA	NA	49915830	49995580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49995375
ES_00006809	chr11	+	7878	8	FSM	ENSMUSG00000020376.18	ENSMUST00000238748.2	7879	8	-1	2	0	-2	multi-exon	FALSE	canonical	3	19	junction_7	98.8135742141716	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTTGTGTCACGTGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	49916172	50016544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_50009871
ES_00006810	chr11	+	1839	9	FSM	ENSMUSG00000020376.18	ENSMUST00000102776.5	1502	9	-337	0	-335	0	multi-exon	FALSE	canonical	3	193	junction_8	44.3931300991494	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGCCAGCGTGTGTTT	NA	False	NA	24	True	NA	NA	NA	49915837	49995580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49990072_49990167_49995375
ES_00006811	chr11	+	4407	21	FSM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_18	14.0538251020852	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTGTGTGCAGTGCTT	NA	False	NA	7	True	AATAAA	-20	NA	50022222	50062857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
ES_00006817	chr11	+	2442	15	FSM	ENSMUSG00000036620.15	ENSMUST00000041725.14	2429	15	-13	0	-13	0	multi-exon	TRUE	canonical	3	193	junction_14	11.6647471695966	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCTCATAGGTGAAT	NA	False	NA	13	True	AATAAA	-13	NA	50116148	50125930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_50116567_50121506_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
ES_00006821	chr11	+	4020	12	FSM	ENSMUSG00000007850.17	ENSMUST00000123371.8	4002	12	-18	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	114.133747843021	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	50268577	50276748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ES_00006822	chr11	+	2144	13	FSM	ENSMUSG00000007850.17	ENSMUST00000077817.8	2126	13	-18	0	0	0	multi-exon	FALSE	canonical	3	24	junction_12	133.956356906104	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50268577	50277355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50276603
ES_00006823	chr11	+	2141	13	ISM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	573	-1	1	0	3prime_fragment	FALSE	canonical	3	224	junction_3	98.8039585351833	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50269118	50277355	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ES_00006824	chr11	+	2111	13	NIC	ENSMUSG00000007850.17	novel	2427	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_10	135.177326953237	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50269118	50277355	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
ES_00006825	chr11	+	2122	12	FSM	ENSMUSG00000007850.17	ENSMUST00000134230.8	1724	12	0	-398	0	0	multi-exon	FALSE	canonical	3	224	junction_2	96.3150821072292	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACGTGAGTTTAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	50269127	50277148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_50269255_50270294_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ES_00006826	chr11	+	1221	6	NIC	ENSMUSG00000007850.17	novel	2427	15	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	175.429073987181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50273788	50277355	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_50273889_50274005_50274142_50274506_50274597_50275470_50275564_50275967_50276018_50276603
ES_00006832	chr11	+	1946	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	3	0	3	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153943	51172591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ES_00006833	chr11	+	1914	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153943	51172591	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ES_00006839	chr11	+	825	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGGCAAGTGTGTGG	NA	False	NA	16	True	AGTAAA	-11	NA	51510597	51514256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_51510979_51513311_51513418_51513918
ES_00006841	chr11	+	3428	4	FSM	ENSMUSG00000052563.14	ENSMUST00000064493.6	3426	4	-2	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.64279609239471	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCGTTCCTGACTACA	NA	False	NA	11	True	AATAAA	-17	NA	51541780	51548507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_51542041_51544560_51544699_51544818_51544941_51545599
ES_00006846	chr11	+	1454	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	-14	0	0	0	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	2737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	397	False	NA	34	True	AATAAA	-41	NA	52122821	52137685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ES_00006847	chr11	+	1760	6	FSM	ENSMUSG00000036309.15	ENSMUST00000109072.2	1754	6	-20	14	-20	-14	multi-exon	FALSE	canonical	2	5	junction_1	1986.48266038242	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTGTGGATGTAAATG	571	False	NA	20	True	AATAAA	-27	NA	52122995	52137671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_52123440_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ES_00006854	chr11	+	9952	21	FSM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	0	147	0	-147	multi-exon	FALSE	canonical	3	75	junction_1	17.4421185639818	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGTACACTATTATTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	53241659	53312510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ES_00006855	chr11	+	918	3	FSM	ENSMUSG00000049470.14	ENSMUST00000129019.2	933	3	15	0	15	0	multi-exon	FALSE	canonical	3	114	junction_2	3	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCTTGTTTAAAGCTT	716	False	NA	NA	False	AGTAAA	-37	NA	53301535	53306660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_53301787_53302662_53302884_53306214
ES_00006858	chr11	+	4602	10	NIC	ENSMUSG00000018398.19	novel	4563	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	33.8486099428282	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATGGTGTCATTTT	NA	False	NA	16	True	ATTAAA	-18	NA	53410580	53434922	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_53410867_53422822_53422944_53425259_53425456_53425781_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53431856
ES_00006859	chr11	+	4563	10	FSM	ENSMUSG00000018398.19	ENSMUST00000117061.8	4563	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	33.8486099428282	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCATGGTGTCATTTTT	NA	False	NA	17	True	ATTAAA	-19	NA	53410626	53434923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53431856
ES_00006873	chr11	+	6255	18	FSM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_9	15.4083965785252	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGTAATGTTTGTGTTTC	1976	False	NA	27	True	AATAAA	-17	NA	54329024	54409061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
ES_00006874	chr11	+	1838	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	-23	14	20	-14	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAAATGTTCCTTTT	NA	False	NA	NA	False	AATAAA	-1	NA	54413692	54525821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
ES_00006876	chr11	+	3372	17	FSM	ENSMUSG00000037533.21	ENSMUST00000094536.10	3372	17	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_16	20.1463396179058	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTCTTATCTAACATT	5909	False	NA	NA	False	ACTAAA	-19	NA	54513191	54578851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54578369
ES_00006877	chr11	+	716	2	FSM	ENSMUSG00000037533.21	ENSMUST00000136494.2	716	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGATAGTCTTGTGTATT	NA	False	NA	NA	False	NA	NA	NA	54582257	54587312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_54582567_54586905
ES_00006887	chr11	+	676	1	FSM	ENSMUSG00000081749.4	ENSMUST00000118330.2	726	1	146	-96	146	96	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACTGGGTCTAATTAGT	NA	False	NA	NA	False	NA	NA	NA	56350320	56350996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_56350300_56351000
ES_00006896	chr11	+	6617	19	FSM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	0	0	0	0	multi-exon	FALSE	canonical	3	480	junction_18	70.0811038091661	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	17	True	AATAAA	-18	NA	57899889	57952860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_57900374_57931216_57931279_57931515_57931582_57932303_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802_57938973_57940522_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
ES_00006900	chr11	+	231	3	FSM	ENSMUSG00000020515.14	ENSMUST00000133923.2	231	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	368.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGCCAAGTCTGTTTAG	NA	False	NA	NA	False	NA	NA	NA	58004852	58008084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58004921_58006090_58006202_58008032
ES_00006905	chr11	+	206	1	Intergenic	novelGene_567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	638	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCATGGCTTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	58146463	58146669	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_58146500_58146700
ES_00006906	chr11	+	2175	11	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	39	junction_1	35.6712769606023	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7673	False	NA	14	True	AATAAA	-21	NA	58197894	58205439	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ES_00006909	chr11	+	1860	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAAGAATCTGGGAGT	7776	False	NA	28	True	AATAAA	-35	NA	58197997	58205453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ES_00006910	chr11	+	3022	7	FSM	ENSMUSG00000013646.18	ENSMUST00000116376.9	3016	7	-14	8	-14	0	multi-exon	FALSE	canonical	3	32	junction_1	38.7101049110206	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGTTTACTGTCT	429	False	NA	11	True	AATAAA	-12	NA	58221535	58238546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58221629_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ES_00006911	chr11	+	2972	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	0	5	0	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGTTTACTGTCT	469	False	NA	11	True	AATAAA	-12	NA	58221575	58238546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ES_00006919	chr11	+	736	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	-18	0	-15	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093296	59096714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ES_00006920	chr11	+	961	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	-21	0	-15	0	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACAGCTTCAGACCTCT	NA	False	NA	1	True	NA	NA	NA	59093296	59096960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ES_00006922	chr11	+	597	3	FSM	ENSMUSG00000086910.2	ENSMUST00000133698.2	659	3	62	0	62	0	multi-exon	FALSE	canonical	1	2	junction_1	1	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGGGAAAAATGCCTCC	NA	False	NA	NA	False	NA	NA	NA	59266348	59270731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59266712_59269251_59269320_59270565
ES_00006926	chr11	+	3098	2	FSM	ENSMUSG00000072893.13	ENSMUST00000132226.2	3184	2	0	86	0	-34	multi-exon	FALSE	canonical	3	12	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTTACTGTAATAAAGTA	NA	False	NA	NA	False	NA	NA	NA	59397493	59400895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59397713_59398016
ES_00006927	chr11	+	8765	24	FSM	ENSMUSG00000005417.18	ENSMUST00000116371.8	8766	24	0	1	0	-1	multi-exon	TRUE	canonical	3	400	junction_2	48.3490381455828	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTGCATGCATATGGCT	3585	False	NA	NA	False	AATAAA	-15	NA	59553332	59671679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626655_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
ES_00006930	chr11	+	5447	10	FSM	ENSMUSG00000005417.18	ENSMUST00000156111.2	2236	10	-3211	0	-3211	0	multi-exon	FALSE	canonical	2	32	junction_1	155.401352139914	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGCCCCTCTCATTCCT	NA	False	NA	17	True	ATTAAA	-14	NA	59648362	59667049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59652154_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
ES_00006940	chr11	+	2053	14	FSM	ENSMUSG00000056598.17	ENSMUST00000108723.9	1917	14	-136	0	-136	0	multi-exon	FALSE	non_canonical	0	0	junction_8	9.60892090438596	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGGTGTCAGTATTCTC	3285	False	NA	NA	False	AATATA	-22	NA	60244018	60285167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619_60266733_60268635_60268811_60275039_60275172_60278118_60278190_60279638_60279763_60284522_60284655_60284950
ES_00006941	chr11	+	4292	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCAATTTGTAAGTCAAA	NA	False	NA	27	True	AATAAA	-18	NA	60308078	60336103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
ES_00006945	chr11	+	4378	21	NNC	ENSMUSG00000020536.13	novel	4268	21	NA	NA	9	0	intron_retention	FALSE	canonical	3	46	junction_6	61.9123574094865	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590557	60605012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597266_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
ES_00006946	chr11	+	4268	21	FSM	ENSMUSG00000020536.13	ENSMUST00000108719.4	4268	21	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_6	33.7192452465947	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590670	60605012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
ES_00006947	chr11	+	4243	22	NNC	ENSMUSG00000020536.13	novel	4268	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	70.2129252722278	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590670	60605012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603924_60603948
ES_00006948	chr11	+	4252	21	NNC	ENSMUSG00000020536.13	novel	4268	21	NA	NA	7	-3	intron_retention	FALSE	canonical	3	15	junction_15	68.4275346625903	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACATCTGCACACATGTGG	NA	False	NA	36	True	AATAAA	-21	NA	60590677	60605009	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601118_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
ES_00006951	chr11	+	3557	3	FSM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	-886	-1955	-841	0	multi-exon	FALSE	canonical	3	114	junction_2	20.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60618382	60623777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60619394_60621108_60621619_60621741
ES_00006954	chr11	+	3277	7	FSM	ENSMUSG00000042569.14	ENSMUST00000108718.2	3277	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTCTTTAATCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	60721504	60751021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ES_00006956	chr11	+	2553	14	NNC	ENSMUSG00000018932.10	novel	2198	12	NA	NA	-837	-7	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	152.493204815142	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCGTGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	60822021	60843613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60822161_60822295_60822493_60822815_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
ES_00006958	chr11	+	2096	11	FSM	ENSMUSG00000018932.10	ENSMUST00000130269.2	2096	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	128.562980674843	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGTGAGACTGACTGT	NA	False	NA	NA	False	NA	NA	NA	60822891	60843620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
ES_00006961	chr11	+	817	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61395969	61403757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
ES_00006964	chr11	+	6669	13	FSM	ENSMUSG00000042331.14	ENSMUST00000202179.2	6676	13	0	7	0	1	multi-exon	FALSE	canonical	0	0	junction_10	9.09326673973661	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTCACCTGGTGACATT	NA	False	NA	7	True	AATAAA	-22	NA	61967922	62113832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
ES_00006970	chr11	+	510	1	Intergenic	novelGene_576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGAGAATTATTTTGT	NA	False	NA	15	True	ATTAAA	-23	NA	62406356	62406866	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_62406400_62406900
ES_00006973	chr11	+	716	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-178	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	17708.5	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442323	62444039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62442422_62442965_62443195_62443650
ES_00006974	chr11	+	716	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-178	0	at_least_one_novel_splicesite	TRUE	canonical	3	26239	junction_2	4589	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442323	62444039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62442422_62442965_62443248_62443703
ES_00006976	chr11	+	239	2	Antisense	novelGene_ENSMUSG00000085748.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTTAAGATTTGTT	NA	False	NA	NA	False	NA	NA	NA	62447912	62459051	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_62447947_62458846
ES_00006977	chr11	+	239	2	Antisense	novelGene_ENSMUSG00000085748.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGTTTTTTAAGATT	NA	False	NA	NA	False	NA	NA	NA	62447907	62459047	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_62447946_62458846
ES_00006980	chr11	+	1372	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTCTGTGTCTGGTTTG	NA	False	NA	4	True	NA	NA	NA	62539489	62557182	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62539683_62555495_62556062_62556569
ES_00006993	chr11	+	2263	7	NNC	ENSMUSG00000018347.17	novel	2270	7	NA	NA	2	-2	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_5	10.077477638554	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTCCTTGTAGCTGCC	NA	False	NA	12	True	AATAAA	-18	NA	65698002	65720062	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_65698088_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713653_65713765_65718867
ES_00006997	chr11	+	2853	17	ISM	ENSMUSG00000020908.15	ENSMUST00000108689.8	6031	41	15121	8	15121	-8	3prime_fragment	FALSE	canonical	2	11	junction_1	5.51949669354009	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCAAGTTGGTTTGTTT	NA	False	NA	-2	True	AATAAA	-9	NA	66984246	66993104	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_66984413_66984492_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ES_00007004	chr11	+	1659	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	-21	0	-21	0	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGGAGTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	67857273	67878433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
ES_00007007	chr11	+	7662	41	FSM	ENSMUSG00000020900.16	ENSMUST00000102611.10	7791	41	41	88	41	0	multi-exon	TRUE	canonical	3	123	junction_6	27.8530855561821	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCGCCTGCTCTGTTTAC	NA	False	NA	-77	True	AATAAA	-18	NA	68582781	68707370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68583009_68590035_68590412_68612145_68612303_68625213_68625242_68636142_68636246_68642767_68642861_68650571_68650636_68651478_68651578_68653336_68653481_68653663_68653760_68655061_68655181_68655866_68656020_68659024_68659199_68661709_68661884_68662697_68662813_68673931_68674126_68674208_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
ES_00007011	chr11	+	637	2	FSM	ENSMUSG00000060938.15	ENSMUST00000134403.2	636	2	0	-1	0	0	multi-exon	FALSE	canonical	3	14740	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	33	True	ATTAAA	-14	NA	68793678	68795360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68794146_68795190
ES_00007013	chr11	+	4145	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	-167	0	4	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5105	False	NA	18	True	AATAAA	-18	NA	68906755	68927296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ES_00007015	chr11	+	4185	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	-23	2	-23	1	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTGTTCATCTCTGAG	5063	False	NA	19	True	AATAAA	-19	NA	68906713	68927297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ES_00007016	chr11	+	4171	23	FSM	ENSMUSG00000020898.19	ENSMUST00000152979.8	3976	23	-198	3	-23	0	multi-exon	FALSE	canonical	3	48	junction_2	94.2205957376466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5063	False	NA	18	True	AATAAA	-18	NA	68906713	68927296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ES_00007018	chr11	+	3920	23	NIC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_2	95.0498890318062	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5311	False	NA	18	True	AATAAA	-18	NA	68906961	68927296	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ES_00007021	chr11	+	1875	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	-44	0	-44	0	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936428	68942490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ES_00007027	chr11	+	1174	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	-5	94	0	-62	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCTTCTAATTTGCCGCG	4647	False	NA	NA	False	NA	NA	NA	68961631	68964025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
ES_00007029	chr11	+	2812	4	FSM	ENSMUSG00000020894.17	ENSMUST00000117780.2	1113	4	-12	-1687	8	-7	multi-exon	FALSE	canonical	3	124	junction_1	8.17856276425687	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACCATATGGTGTCCAAA	NA	False	NA	11	True	AATAAA	-11	NA	68979323	68983203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801
ES_00007032	chr11	+	4676	23	FSM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	-12	7	-12	5	multi-exon	FALSE	canonical	2	8	junction_18	7.25181652933985	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAACCCAAGACTTTGT	NA	False	NA	NA	False	AATACA	-19	NA	68989761	69000779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215_68996450_68997278_68997896_68998358_68998546_68998686_68998877_68999186_68999338_68999906
ES_00007034	chr11	+	658	5	ISM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	9937	1	9937	-1	3prime_fragment	FALSE	canonical	2	3	junction_1	12.457427503301	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGGTCTGAGAACGTGGG	NA	False	NA	6	True	AATAAA	-17	NA	69057751	69060617	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_69057770_69058181_69058304_69059603_69059705_69060043_69060215_69060371
ES_00007046	chr11	+	3275	5	FSM	ENSMUSG00000059552.14	ENSMUST00000147512.2	3275	5	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	156.088716760694	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAACAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	69471227	69481331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69479374_69479451
ES_00007047	chr11	+	1007	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	1	-40	1	40	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGGGCTGGGACAG	NA	False	NA	NA	False	NA	NA	NA	69512850	69514736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
ES_00007056	chr11	+	457	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	-10	45	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTTGAAGCAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69729339	69730399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
ES_00007057	chr11	+	961	2	FSM	ENSMUSG00000070394.11	ENSMUST00000139085.2	953	2	-8	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTTTGGTGTCTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	69729380	69730438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69730095_69730191
ES_00007059	chr11	+	1927	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGGATGTGATGGGA	NA	False	NA	22	True	TATAAA	-22	NA	69737501	69741869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ES_00007060	chr11	+	5188	29	FSM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	16.6703864896494	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGCCTCCGCCTCTGTC	NA	False	NA	15	True	AATAAA	-15	NA	69792716	69804646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69793012_69793833_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ES_00007063	chr11	+	1220	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	4233	False	NA	12	True	AATAAA	-22	NA	69805017	69807417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ES_00007065	chr11	+	2785	6	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	1238	0	intron_retention	FALSE	canonical	3	43	junction_1	17.8840711248865	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69828390	69832421	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ES_00007070	chr11	+	1351	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_2	75.6350888587213	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	4728	False	NA	16	True	AATAAA	-26	NA	69881968	69885777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
ES_00007072	chr11	+	1706	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2416	False	NA	16	True	AATAAA	-26	NA	69886701	69890835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ES_00007075	chr11	+	5059	16	FSM	ENSMUSG00000020888.17	ENSMUST00000102575.9	5037	16	-22	0	0	0	multi-exon	FALSE	canonical	2	4	junction_15	138.462606263689	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATGTTACCCCACTGTGG	7135	False	NA	NA	False	NA	NA	NA	69891420	69903127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969_69901604_69901702
ES_00007076	chr11	+	1024	5	FSM	ENSMUSG00000020888.17	ENSMUST00000135422.2	1010	5	-14	0	0	0	multi-exon	FALSE	canonical	3	488	junction_3	26.1247009552263	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGCATGGAGAGGGTGAG	7361	False	NA	NA	False	NA	NA	NA	69891646	69896839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69891853_69895630_69896127_69896262_69896373_69896487_69896624_69896763
ES_00007084	chr11	+	1967	15	FSM	ENSMUSG00000060216.16	ENSMUST00000108568.10	1777	15	-190	0	-188	0	multi-exon	FALSE	canonical	3	37	junction_13	60.0347263452324	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323272	70331500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
ES_00007085	chr11	+	1368	16	FSM	ENSMUSG00000060216.16	ENSMUST00000102563.2	1352	16	-16	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	64.7561580083315	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAAACTTGGCTTGGTC	NA	False	NA	37	True	AATAAA	-43	NA	70323507	70331649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989_70331102_70331581
ES_00007088	chr11	+	1043	5	FSM	ENSMUSG00000018919.11	ENSMUST00000019063.3	1000	5	-38	-5	-38	5	multi-exon	FALSE	canonical	1	1	junction_1	5.95818764390649	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCCAGTGATGAAAGATG	NA	False	NA	NA	False	AATAAA	-25	NA	70396031	70402009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70396331_70400619_70400701_70401040_70401178_70401394_70401579_70401667
ES_00007089	chr11	+	768	4	FSM	ENSMUSG00000018919.11	ENSMUST00000179986.8	478	4	22	-312	22	16	multi-exon	FALSE	canonical	2	3	junction_1	5.71547606649408	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGATGAGCAATTTTTA	NA	False	NA	NA	False	AATAAA	-36	NA	70400817	70402020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70400912_70401040_70401178_70401394_70401579_70401667
ES_00007090	chr11	+	669	2	FSM	ENSMUSG00000018286.7	ENSMUST00000145503.2	669	2	0	0	0	0	multi-exon	FALSE	canonical	3	5843	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTACTTGTGGGCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	70416192	70417250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70416322_70416710
ES_00007094	chr11	+	4632	32	FSM	ENSMUSG00000020827.19	ENSMUST00000072873.14	4610	32	-22	0	-13	0	multi-exon	FALSE	canonical	3	41	junction_20	18.9436427990342	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTCACTGGGCCCTGGG	1453	False	NA	NA	False	NA	NA	NA	70453693	70504954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ES_00007095	chr11	+	4865	32	FSM	ENSMUSG00000020827.19	ENSMUST00000102559.11	4865	32	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_17	25.4119032798382	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTTTGAGATCCTACT	1483	False	NA	NA	False	AATAAA	-19	NA	70453723	70505304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ES_00007096	chr11	+	4826	32	FSM	ENSMUSG00000020827.19	ENSMUST00000079244.12	4829	32	0	3	0	2	multi-exon	FALSE	canonical	1	1	junction_10	24.4710961615232	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGAGATCCTACTAT	1602	False	NA	NA	False	AATAAA	-21	NA	70453842	70505306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494761_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ES_00007100	chr11	+	313	2	FSM	ENSMUSG00000040746.16	ENSMUST00000143313.2	313	2	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGAAGAAGCCTGCACT	NA	False	NA	NA	False	AATGAA	-26	NA	70539947	70540358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70540173_70540270
ES_00007103	chr11	+	1688	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	-237	3	-237	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	6876	False	NA	10	True	AATAAA	-13	NA	70547790	70553336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ES_00007106	chr11	+	2061	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	922	False	NA	18	True	ATTAAA	-26	NA	70655034	70663754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70655376_70662034
ES_00007107	chr11	+	1424	5	FSM	ENSMUSG00000020817.17	ENSMUST00000179114.8	1264	5	-69	-91	-55	91	multi-exon	FALSE	canonical	3	143	junction_4	19.8179211826064	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCGTGTATTCAATACCT	NA	False	NA	NA	False	NA	NA	NA	70735548	70785038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394
ES_00007115	chr11	+	574	4	FSM	ENSMUSG00000018449.13	ENSMUST00000169965.8	343	4	20	-251	-2	105	multi-exon	FALSE	canonical	3	26	junction_3	151.702193641211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCGAATGGAGGTGTAA	NA	False	NA	NA	False	AATAAA	-28	NA	70861352	70868764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70868483
ES_00007119	chr11	+	2524	3	FSM	ENSMUSG00000040599.14	ENSMUST00000133413.8	344	3	13	-2193	13	0	multi-exon	FALSE	canonical	3	36	junction_1	44	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910449	70918197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70910550_70915375_70915538_70915935
ES_00007121	chr11	+	1518	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	-5	0	-5	0	multi-exon	TRUE	canonical	0	0	junction_3	92.1316449435263	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933275	71938196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
ES_00007125	chr11	+	610	4	NNC	ENSMUSG00000040483.16	novel	651	4	NA	NA	-59	103	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2.35702260395516	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGCATCTCATGGACA	NA	False	NA	NA	False	NA	NA	NA	72192395	72203010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_72192536_72194152_72194289_72199432_72199538_72202781
ES_00007126	chr11	+	764	4	FSM	ENSMUSG00000040483.16	ENSMUST00000140842.9	651	4	-10	-103	0	103	multi-exon	FALSE	canonical	2	8	junction_1	2.35702260395516	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGCATCTCATGGACA	NA	False	NA	NA	False	NA	NA	NA	72192454	72203010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72192536_72194152_72194289_72199432_72199751_72202781
ES_00007130	chr11	+	4448	25	FSM	ENSMUSG00000040463.17	ENSMUST00000152894.8	4448	25	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	208.161057937518	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ES_00007135	chr11	+	3815	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	0	0	0	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ES_00007138	chr11	+	7899	24	NIC	ENSMUSG00000020790.15	novel	8030	25	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	78	junction_3	29.9114003593208	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTTGGACTAATGTG	NA	False	NA	NA	False	AATAAA	-25	NA	72580826	72662972	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_72580861_72602982_72603176_72605190_72605310_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
ES_00007143	chr11	+	4197	3	FSM	ENSMUSG00000055670.15	ENSMUST00000125122.2	4197	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATTTCTCCCTTTTCT	NA	False	NA	11	True	TATAAA	-15	NA	72811668	72817946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72813310_72813935_72814008_72815462
ES_00007146	chr11	+	4604	22	FSM	ENSMUSG00000020788.16	ENSMUST00000163326.8	4606	22	2	0	2	0	multi-exon	FALSE	canonical	3	16	junction_21	23.72461048905	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTAGTCTTTTCTGAG	NA	False	NA	22	True	AATAAA	-22	NA	72851996	72883869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72852298_72861421_72861440_72861673_72861757_72862970_72863076_72863228_72863368_72863647_72863729_72863819_72863906_72866011_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880387_72882514
ES_00007149	chr11	+	3444	16	FSM	ENSMUSG00000020785.18	ENSMUST00000092937.13	3424	16	-22	2	13	-2	multi-exon	FALSE	canonical	2	15	junction_1	5.11815939137846	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTGTATGTCTTCTG	NA	False	NA	NA	False	AATAAA	-27	NA	72909846	72932897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72909954_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
ES_00007155	chr11	+	5582	26	FSM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	-203	0	-183	0	multi-exon	TRUE	canonical	0	0	junction_12	69.5319897601097	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74540137	74561673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ES_00007157	chr11	+	200	2	Antisense	novelGene_ENSMUSG00000020745.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAAAATAAACTGCCA	NA	False	NA	NA	False	NA	NA	NA	74591444	74600899	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_74591462_74600716
ES_00007159	chr11	+	2077	11	FSM	ENSMUSG00000010554.15	ENSMUST00000010698.13	2073	11	-4	0	-4	0	multi-exon	FALSE	canonical	2	3	junction_7	160.067766898898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATATTATAAAATAGCTT	8490	False	NA	NA	False	NA	NA	NA	74661651	74708720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74693718_74693839_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ES_00007165	chr11	+	1768	5	FSM	ENSMUSG00000038335.14	ENSMUST00000130910.2	769	5	0	-999	0	0	multi-exon	FALSE	canonical	3	671	junction_1	91.1304010745042	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74796036	74800168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_74796143_74796716_74796850_74798160_74798278_74798649_74798947_74799053
ES_00007173	chr11	+	1918	4	ISM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	-25	0	-25	0	intron_retention	FALSE	canonical	3	27	junction_1	3.09120616516523	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358879	75361725	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297
ES_00007174	chr11	+	7457	42	FSM	ENSMUSG00000020850.15	ENSMUST00000018449.11	7442	42	-15	0	-15	0	multi-exon	FALSE	canonical	3	217	junction_5	157.019499238112	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTCTTGCTGTTA	NA	False	NA	18	True	AATAAA	-15	NA	75377626	75400273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75378018_75378450_75378620_75380567_75380733_75380823_75381043_75381154_75381368_75381466_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75382978_75383088_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ES_00007175	chr11	+	7268	43	FSM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	-19	0	-15	0	multi-exon	FALSE	canonical	2	7	junction_1	167.072261580339	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTCTTGCTGTTATG	NA	False	NA	20	True	AATAAA	-17	NA	75377626	75400275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75377716_75377906_75378018_75378450_75378620_75380567_75380733_75380823_75381043_75381154_75381368_75381466_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75382978_75383088_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ES_00007177	chr11	+	7145	14	FSM	ENSMUSG00000038178.17	ENSMUST00000169547.9	7145	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	7.15095061334898	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACTCCTCTGTGGCTTC	7289	False	NA	NA	False	NA	NA	NA	75422937	75468396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75423241_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ES_00007185	chr11	+	4547	32	FSM	ENSMUSG00000017774.20	ENSMUST00000069057.13	4547	32	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	33.5644192461903	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTCCTGTGAGTGT	8843	False	NA	15	True	AATAAA	-19	NA	75542335	75564736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75542492_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
ES_00007186	chr11	+	4728	32	FSM	ENSMUSG00000017774.20	ENSMUST00000108431.3	4718	32	-10	0	-10	0	multi-exon	FALSE	canonical	3	104	junction_1	44.4739631998939	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	NA	False	NA	13	True	AATAAA	-17	NA	75546688	75564734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75547028_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
ES_00007187	chr11	+	2503	21	FSM	ENSMUSG00000017774.20	ENSMUST00000151174.8	2503	21	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	50.569036969276	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAATTAACAGT	NA	False	NA	NA	False	NA	NA	NA	75546974	75560413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75547028_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023
ES_00007189	chr11	+	4290	3	FSM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_2	118.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTATGTTGAATGTCGG	2123	False	NA	NA	False	AATAAA	-17	NA	75570109	75597734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75570491_75583022_75583389_75594191
ES_00007190	chr11	+	852	3	FSM	ENSMUSG00000017776.16	ENSMUST00000147718.2	852	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	225.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGGTGTTTCTGAAG	2381	False	NA	NA	False	NA	NA	NA	75570367	75591563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75570491_75583022_75583559_75591370
ES_00007192	chr11	+	599	5	FSM	ENSMUSG00000020849.14	ENSMUST00000134745.8	599	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4641.68485035337	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAGAATAAAGAAGCGC	3035	False	NA	NA	False	NA	NA	NA	75623738	75655449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75623918_75642706_75642907_75646399_75646479_75650117_75650255_75655445
ES_00007196	chr11	+	217	2	Antisense	novelGene_ENSMUSG00000020844.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	50	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGGGAAAAGGTGAAGTC	1287	False	NA	NA	False	NA	NA	NA	76090721	76172912	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_76090774_76172747
ES_00007200	chr11	+	3056	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	-183	-56	8	56	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGGTGGTTGGAAGGT	NA	False	NA	59	True	NA	NA	NA	76297785	76307174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ES_00007203	chr11	+	206	2	Intergenic	novelGene_623	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTCCTTCCTTAACTGCC	NA	False	NA	NA	False	NA	NA	NA	76710050	76799077	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_76710082_76798902
ES_00007216	chr11	+	1787	2	FSM	ENSMUSG00000000686.12	ENSMUST00000094004.5	2662	2	31	844	31	-844	multi-exon	FALSE	canonical	2	3	junction_1	0	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGACAGGATGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	77405977	77410027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77406879_77409141
ES_00007222	chr11	+	7504	42	FSM	ENSMUSG00000000631.21	ENSMUST00000108375.9	7513	42	9	0	9	0	multi-exon	FALSE	canonical	1	3	junction_10	31.5068522239413	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTTTCCCTGCCTCTC	NA	False	NA	19	True	AATAAA	-20	NA	77654080	77756806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77713488_77713501_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ES_00007226	chr11	+	4572	15	FSM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	-162	0	-114	0	multi-exon	FALSE	canonical	3	95	junction_1	13.672742137224	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTCTGCCTGTCTGTCC	NA	False	NA	18	True	TATAAA	-22	NA	77873465	77921365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
ES_00007230	chr11	+	1791	4	FSM	ENSMUSG00000020834.18	ENSMUST00000122342.2	1791	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	4.08248290463863	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTCTGGCTCCCGCCTC	NA	False	NA	3	True	AATAAA	-15	NA	77923177	77928690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77923530_77924838_77924963_77925100_77925413_77927687
ES_00007231	chr11	+	2621	11	FSM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_3	23.4778619128744	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928756	77951260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ES_00007232	chr11	+	2712	12	FSM	ENSMUSG00000061981.15	ENSMUST00000148162.9	2712	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	138.547303733782	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928756	77951260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ES_00007235	chr11	+	3737	3	FSM	ENSMUSG00000037750.17	ENSMUST00000100782.4	2473	3	0	-1264	0	639	multi-exon	FALSE	canonical	3	49	junction_2	46.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATCTTTTTTTTTTTTT	2646	False	NA	NA	False	AGTAAA	-10	NA	77985533	78048165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77985618_78033918_78034041_78044634
ES_00007238	chr11	+	2700	4	FSM	ENSMUSG00000019437.18	ENSMUST00000092880.14	2700	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	71.8532455000391	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTGCTAGAGGTTGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	78069476	78072735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78070048_78070195_78070279_78070365_78070449_78070772
ES_00007239	chr11	+	1412	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTTAATTGCTCAGA	NA	False	NA	52	True	NA	NA	NA	78069510	78071646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
ES_00007242	chr11	+	1704	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	-19	0	-19	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6355	False	NA	21	True	ATTAAA	-15	NA	78079585	78083014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ES_00007247	chr11	+	7443	39	FSM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_1	88.3718730713483	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCCTTCCCTCCTCA	NA	False	NA	21	True	AGTAAA	-14	NA	78152577	78181449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922_78158069_78158924_78159044_78159151_78159316_78159464_78159724_78160313_78160520_78162116_78163210_78163603_78163796_78163922_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
ES_00007251	chr11	+	2402	9	FSM	ENSMUSG00000002055.10	ENSMUST00000146068.8	2402	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_8	13.5317912709294	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGCTATGAAACCCTTAA	2878	False	NA	NA	False	CATAAA	-37	NA	78192480	78205689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204766_78204989_78205283_78205530
ES_00007254	chr11	+	1345	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	-16	0	-16	0	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234291	78239990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
ES_00007255	chr11	+	1390	5	FSM	ENSMUSG00000002058.14	ENSMUST00000108295.8	1371	5	-24	5	0	-5	multi-exon	FALSE	canonical	3	22	junction_4	104.920207777148	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGCCTGTGTGTCTATA	NA	False	NA	14	True	AATAAA	-21	NA	78234307	78239985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239290
ES_00007259	chr11	+	1842	1	FSM	ENSMUSG00000020829.10	ENSMUST00000180786.2	1834	1	254	-262	254	262	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	552	False	NA	NA	False	NA	NA	NA	78361305	78363147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78361300_78363100
ES_00007266	chr11	+	1184	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	-17	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAC	NA	False	NA	36	True	AATGAA	-43	NA	78427253	78432311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
ES_00007267	chr11	+	597	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	-15	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427253	78432315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ES_00007275	chr11	+	7211	15	FSM	ENSMUSG00000017639.14	ENSMUST00000017783.13	7156	15	-55	0	-55	0	multi-exon	FALSE	canonical	2	11	junction_1	43.0135835213359	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79481982	79588849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_79482261_79510454_79510543_79511292_79511382_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
ES_00007276	chr11	+	7073	13	NIC	ENSMUSG00000017639.14	novel	677	3	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	20.8706332758097	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79551365	79588849	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
ES_00007277	chr11	+	6951	14	NNC	ENSMUSG00000017639.14	novel	677	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	26	junction_2	30.1371617892272	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79551387	79588849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_79551683_79571613_79571838_79574235_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548_79587486_79587516
ES_00007285	chr11	+	7259	23	FSM	ENSMUSG00000017550.15	ENSMUST00000108239.7	7266	23	7	0	7	0	multi-exon	FALSE	canonical	3	47	junction_12	23.2130360212169	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTATGGTTTTTTTGTT	6006	False	NA	28	True	ATTAAA	-23	NA	79980232	80026620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772_80000962_80002300_80002398_80003574_80003655_80003900_80004041_80004981_80005133_80009790_80009968_80010292_80010430_80011507_80011602_80014892_80014958_80018082_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
ES_00007288	chr11	+	3283	21	FSM	ENSMUSG00000017686.18	ENSMUST00000077451.14	3297	21	14	0	14	0	multi-exon	FALSE	canonical	3	23	junction_19	176.261425161605	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099858	80157638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80148339_80148463_80156567
ES_00007290	chr11	+	3687	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACTTTTCAAAGACAAC	NA	False	NA	NA	False	AATAAA	-13	NA	80099909	80158312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
ES_00007292	chr11	+	3035	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	-6	0	0	0	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCTTTTCAAGTATTTA	NA	False	NA	34	True	AATAAA	-45	NA	80099938	80157593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
ES_00007298	chr11	+	1649	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	-23	0	-15	0	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	-44	True	NA	NA	NA	80319425	80362735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
ES_00007304	chr11	+	5849	20	FSM	ENSMUSG00000020697.17	ENSMUST00000092849.12	4560	20	47	-1336	13	0	multi-exon	FALSE	canonical	3	118	junction_3	18.4785568622637	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTCTACCTGAGATGTT	NA	False	NA	-65	True	AAAAAG	-44	NA	82671980	82695024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ES_00007305	chr11	+	6710	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173727.8	3636	20	-85	-2989	0	741	multi-exon	FALSE	canonical	3	52	junction_3	31.7035261983143	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTGACCTGCCCGAGC	NA	False	NA	NA	False	NA	NA	NA	82671933	82695841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ES_00007306	chr11	+	5855	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173347.8	3631	20	-51	-2173	0	0	multi-exon	FALSE	canonical	0	0	junction_1	50.9559583885031	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTCTACCTGAGATGTT	NA	False	NA	-65	True	AAAAAG	-44	NA	82671967	82695024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_82672099_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ES_00007308	chr11	+	5272	4	FSM	ENSMUSG00000018986.11	ENSMUST00000214041.2	1966	4	-9	-3297	-6	3283	multi-exon	FALSE	canonical	2	3	junction_1	4.49691252107735	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTACTCTGTTCTCAGAT	3788	False	NA	NA	False	AATATA	-11	NA	83082149	83109263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83082235_83084868_83085036_83103369_83104440_83105313
ES_00007311	chr11	+	494	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	-23	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5869	False	NA	8	True	ATTAAA	-17	NA	83182545	83185456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83182924_83185340
ES_00007312	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTGTTTGGGTAAGA	5869	False	NA	10	True	ATTAAA	-19	NA	83182545	83185458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83182660_83182799_83182924_83185340
ES_00007313	chr11	+	5461	22	FSM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	164	0	-56	0	multi-exon	FALSE	canonical	3	76	junction_14	47.3312733095844	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTTTGTGGTATGGACT	2123	False	NA	NA	False	AATAAA	-16	NA	83193472	83295861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83255620_83255663_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
ES_00007314	chr11	+	3269	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAACTGCACCTTAT	2250	False	NA	NA	False	ATTAAA	-20	NA	83193599	83293838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
ES_00007317	chr11	+	5614	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_5	6.60059596066985	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTGGTTTCTGGGTCTCT	4017	False	NA	11	True	AATAAA	-20	NA	83644521	83674580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ES_00007318	chr11	+	5492	20	FSM	ENSMUSG00000000976.14	ENSMUST00000125831.8	4067	20	308	-1733	-7	0	multi-exon	FALSE	canonical	2	8	junction_1	14.4999761199536	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTGGTTTCTGGGTCTCT	4343	False	NA	11	True	AATAAA	-20	NA	83644847	83674580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83644972_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ES_00007322	chr11	+	7666	22	NIC	ENSMUSG00000034940.16	novel	3990	23	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_7	16.6746919453981	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTGTCTGTTCTGAAAC	1421	False	NA	23	True	AATAAA	-33	NA	83855242	83935404	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_83855373_83862377_83862419_83867905_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
ES_00007328	chr11	+	9179	56	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	1	3	junction_51	41.1637969800914	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTGTCATTTCAACTCA	NA	False	NA	16	True	AATAAA	-24	NA	84070656	84292481	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84181113_84181138_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ES_00007331	chr11	+	4091	25	FSM	ENSMUSG00000020527.15	ENSMUST00000093969.11	4091	25	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_6	19.4264996561112	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTACAGTTGTAAGT	NA	False	NA	120	True	NA	NA	NA	84770973	84802052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ES_00007332	chr11	+	3735	24	NIC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	7	-6	combination_of_known_junctions	FALSE	canonical	3	18	junction_9	31.3266828534579	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAATAGCCAACCTTTTG	NA	False	NA	10	True	AATAAA	-18	NA	84771142	84801942	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ES_00007333	chr11	+	4431	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	7	49	at_least_one_novel_splicesite	TRUE	canonical	3	9	junction_22	39.5008860660112	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAAAAGCAGTCAATGC	NA	False	NA	NA	False	NA	NA	NA	84771142	84802101	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_84771338_84771615_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798335_84798462_84799045_84799132_84800079_84800380_84801218
ES_00007334	chr11	+	3934	25	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_24	40.6530031690977	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84771190	84801948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_84771338_84771615_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84801218
ES_00007336	chr11	+	3706	24	NIC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	29.4248586443195	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84771184	84801948	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ES_00007337	chr11	+	3366	21	NIC	ENSMUSG00000020527.15	novel	3644	23	NA	NA	9	-4	combination_of_known_splicesites	FALSE	canonical	1	4	junction_6	42.1776006904139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGCCAACCTTTTGTT	NA	False	NA	12	True	AATAAA	-20	NA	84773420	84801944	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ES_00007360	chr11	+	3247	24	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	4	30188	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_18	111.613056942955	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTTTGTCATAATTTG	1920	False	NA	5	True	NA	NA	NA	87017906	87141697	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
ES_00007363	chr11	+	3562	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	1	30191	at_least_one_novel_splicesite	TRUE	canonical	3	225	junction_24	67.5794671109502	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGTCATAATTTGTTC	1917	False	NA	8	True	NA	NA	NA	87017903	87141700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
ES_00007372	chr11	+	5342	21	NNC	ENSMUSG00000018401.18	novel	5753	19	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	3	9	junction_1	41.8345252154246	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTTGGGTCTTTTTA	NA	False	NA	17	True	AATAAA	-17	NA	87482977	87507125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87483077_87483723_87483853_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901_87506343_87506889
ES_00007373	chr11	+	5212	19	FSM	ENSMUSG00000018401.18	ENSMUST00000119628.8	4664	19	-548	0	-115	0	multi-exon	FALSE	canonical	3	10	junction_1	32.1891113404656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCACTTCCCCCATGT	NA	False	NA	3	True	AATAAA	-16	NA	87483174	87505998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87483853_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ES_00007374	chr11	+	5845	18	NIC	ENSMUSG00000018401.18	novel	792	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	23.4398294690113	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGGTCTTTTTATTT	NA	False	NA	20	True	AATAAA	-20	NA	87486476	87507128	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_87486703_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ES_00007377	chr11	+	1689	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	-74	-761	-74	761	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87628303	87635210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
ES_00007380	chr11	+	2655	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	-159	3	-159	-3	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTCTGTGGACTCTCG	6297	False	NA	15	True	TATAAA	-17	NA	87743881	87754626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ES_00007381	chr11	+	2486	18	NNC	ENSMUSG00000034121.13	novel	2499	18	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_5	37.2197253949772	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCCTCTGTGGACTCTC	6463	False	NA	14	True	TATAAA	-16	NA	87744047	87754625	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747485_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ES_00007384	chr11	+	5362	4	FSM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	0	0	0	0	multi-exon	FALSE	canonical	3	1111	junction_3	192.19839287107	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGATTTAAGTTCTCC	6250	False	NA	20	True	AATAAA	-22	NA	87938198	87944581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237
ES_00007385	chr11	+	6437	3	FSM	ENSMUSG00000018379.18	ENSMUST00000079866.11	2948	3	-1224	-2265	-879	0	multi-exon	FALSE	canonical	3	1310	junction_1	135	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGATTTAAGTTCTCC	5371	False	NA	20	True	AATAAA	-22	NA	87937319	87944581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87938859_87939315_87939501_87939868
ES_00007386	chr11	+	3469	2	FSM	ENSMUSG00000018379.18	ENSMUST00000132983.3	759	2	0	-2710	0	6	multi-exon	FALSE	canonical	3	275	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAAGTTCTCCATCCTT	8289	False	NA	26	True	AATAAA	-28	NA	87940237	87944587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87940922_87941802
ES_00007388	chr11	+	4583	6	FSM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	9.15641851380768	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGACTGTTAATGCCGC	NA	False	NA	17	True	ATTAAA	-22	NA	87959104	87975555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
ES_00007392	chr11	+	1427	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	-23	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095213	88102333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ES_00007393	chr11	+	4095	9	Fusion	ENSMUSG00000081766.4_ENSMUSG00000033983.15	novel	2607	7	NA	NA	-2714	0	intron_retention	FALSE	canonical	3	336	junction_4	481.550360813903	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	6717	False	NA	15	True	AATAAA	-17	NA	88858363	88882439	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_+_88858476_88861243_88861306_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ES_00007394	chr11	+	585	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-2701	-18006	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_3	341.385738164649	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTTCCAGACGTGAGGA	6730	False	NA	NA	False	NA	NA	NA	88858376	88863774	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_88858476_88861243_88861306_88861723_88861820_88863446
ES_00007400	chr11	+	5494	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	48	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	180.202012841419	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	24	True	NA	NA	NA	88890249	88911119	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020_88910660_88910707
ES_00007407	chr11	+	5504	17	NIC	ENSMUSG00000059474.14	novel	5232	16	NA	NA	-107	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	31.7736132663567	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776824	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00007408	chr11	+	5513	18	FSM	ENSMUSG00000059474.14	ENSMUST00000063718.11	3785	18	-64	-1664	47	0	multi-exon	FALSE	canonical	3	17	junction_17	47.4662509863478	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776978	93837811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_93777243_93777847_93777900_93782164_93782215_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
ES_00007409	chr11	+	5244	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107854.9	5232	16	-12	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	35.1887608319601	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93777032	93837811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_93777243_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00007415	chr11	+	5887	20	NNC	ENSMUSG00000020859.17	novel	5954	21	NA	NA	1	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	17.7336401920145	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAATATGTATATGAAAC	NA	False	NA	-12	True	AATATA	-1	NA	93973614	94016890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981389_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
ES_00007417	chr11	+	484	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	-17	6	0	-6	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTATTAGTGTTTACCTG	NA	False	NA	9	True	AATAAA	-16	NA	94024310	94046596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
ES_00007420	chr11	+	1215	5	FSM	ENSMUSG00000020864.14	ENSMUST00000021227.6	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.973075064225	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAAAAGAAAATTTTAA	4247	False	NA	NA	False	AATAAA	-10	NA	94219079	94230335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230065
ES_00007421	chr11	+	1071	2	FSM	ENSMUSG00000020864.14	ENSMUST00000149867.2	753	2	-318	0	-318	0	multi-exon	FALSE	canonical	3	477	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGTGTCACCTCCTGCA	9128	False	NA	NA	False	NA	NA	NA	94223960	94225409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94224876_94225253
ES_00007422	chr11	+	2837	7	FSM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	0	0	0	0	multi-exon	FALSE	canonical	3	2480	junction_6	120.266371026983	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94520592	94536042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
ES_00007425	chr11	+	1153	4	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	14088	1113	4944	-1113	3prime_fragment	FALSE	canonical	3	18	junction_2	9.67241208569794	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTCCCTTCCTGCCCA	NA	False	NA	NA	False	AAAAAG	-36	NA	94841137	94842755	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_94841400_94841534_94841726_94841926_94842170_94842298
ES_00007427	chr11	+	3018	9	FSM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	77	0	77	0	multi-exon	FALSE	canonical	3	26	junction_1	8.14612638006556	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCGCCTGGTTTCTTGA	NA	False	NA	20	True	CATAAA	-16	NA	94886966	94897725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94887494_94888819_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ES_00007431	chr11	+	1299	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275716	95282602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ES_00007434	chr11	+	3111	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	-48	0	-30	0	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304875	95384232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ES_00007438	chr11	+	10229	6	NIC	ENSMUSG00000075595.10	novel	3982	6	NA	NA	159	0	intron_retention	FALSE	canonical	3	20	junction_2	20.899760764181	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCACGTGTCTTCTCTTC	NA	False	NA	9	True	AGTAAA	-19	NA	95603657	95663179	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_95604055_95639825_95640434_95643700_95643849_95644187_95644304_95644736_95644882_95654364
ES_00007441	chr11	+	1933	3	FSM	ENSMUSG00000050860.7	ENSMUST00000054173.4	1910	3	-23	0	-22	0	multi-exon	FALSE	canonical	3	8	junction_2	13	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGGACTTGTTCTCTTG	2175	False	NA	20	True	AATAAA	-16	NA	95715302	95722966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95715536_95719491_95719602_95721376
ES_00007445	chr11	+	1448	2	NNC	ENSMUSG00000099928.2	novel	422	3	NA	NA	1451	876	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	0	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTCACTAAATTCTAAT	NA	False	NA	NA	False	NA	NA	NA	95898165	95899757	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_95898430_95898573
ES_00007453	chr11	+	1018	5	NNC	ENSMUSG00000018666.14	novel	912	5	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATTCTTGATTTCTGTC	NA	False	NA	10	True	AATAAA	-11	NA	96679953	96698970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
ES_00007454	chr11	+	2400	5	FSM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	-23	0	-13	0	multi-exon	FALSE	canonical	3	66	junction_4	281.892155797213	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679939	96698975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441
ES_00007455	chr11	+	2179	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	491	0	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
ES_00007456	chr11	+	1251	6	FSM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	266.87570140423	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGTCTTTTGGTGGGG	NA	False	NA	NA	False	ATTAAA	-15	NA	96679984	96699466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96699009
ES_00007457	chr11	+	1177	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679948	96698975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
ES_00007468	chr11	+	1557	3	ISM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	275	-631	275	-2	intron_retention	FALSE	canonical	3	133	junction_1	12.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCTGTGACCACTCATTG	NA	False	NA	20	True	AATAAA	-16	NA	96957983	96959728	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_96958176_96958259_96958387_96958490
ES_00007471	chr11	+	630	3	FSM	ENSMUSG00000018882.13	ENSMUST00000132168.2	493	3	0	-137	0	137	multi-exon	FALSE	canonical	3	2928	junction_1	123	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCACACAAACTTCAGGGA	NA	False	NA	NA	False	NA	NA	NA	97206733	97212688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97206766_97207572_97207751_97212268
ES_00007474	chr11	+	7200	9	NIC	ENSMUSG00000038485.7	novel	7131	10	NA	NA	-171	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_3	8.78564169540279	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTACTTGGCTTTGTTT	NA	False	NA	8	True	AATAAA	-16	NA	97253089	97289368	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_97254250_97263891_97263957_97267262_97267368_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
ES_00007476	chr11	+	5816	24	NNC	ENSMUSG00000049807.17	novel	4531	19	NA	NA	-11141	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	10.5499083933345	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCAGTGTCTCGCTTGT	NA	False	NA	10	True	AATAAA	-17	NA	97295217	97393224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_97295357_97335009_97335172_97337334_97337378_97338995_97339092_97339270_97339350_97339478_97339534_97342217_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
ES_00007477	chr11	+	5787	24	FSM	ENSMUSG00000049807.17	ENSMUST00000121799.8	5816	24	29	0	29	0	multi-exon	FALSE	canonical	3	16	junction_1	11.2785659172316	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGTCTCGCTTGTTTGG	NA	False	NA	14	True	AATAAA	-21	NA	97306387	97393228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97306494_97335009_97335172_97337334_97337378_97338995_97339092_97339270_97339350_97339478_97339534_97342217_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
ES_00007486	chr11	+	1012	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	-246	0	-246	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97593978	97604326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ES_00007491	chr11	+	419	1	FSM	ENSMUSG00000084168.4	ENSMUST00000120130.2	312	1	-5	-102	-5	102	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGCAAAAACAAAACAAAA	1432	False	NA	NA	False	AATAAA	-23	NA	97658880	97659299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97658900_97659300
ES_00007496	chr11	+	503	2	FSM	ENSMUSG00000038366.16	ENSMUST00000153520.3	503	2	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAACCCGGCGCTCTGG	NA	False	NA	NA	False	NA	NA	NA	97697327	97706608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97697746_97706523
ES_00007498	chr11	+	635	1	FSM	ENSMUSG00000082715.2	ENSMUST00000118176.2	444	1	-31	-160	-31	160	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCCTTGTGGGAGTC	NA	False	NA	NA	False	AATAAA	-26	NA	97859586	97860221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97859600_97860200
ES_00007500	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	2836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917749	97921318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ES_00007503	chr11	+	8184	14	FSM	ENSMUSG00000003119.15	ENSMUST00000107539.8	5912	14	-295	-1977	-295	1977	multi-exon	TRUE	canonical	3	54	junction_13	16.8635316059493	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCTGCATTGCATTTA	NA	False	NA	NA	False	ATTAAA	-21	NA	98093589	98144367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
ES_00007513	chr11	+	2308	14	FSM	ENSMUSG00000019312.11	ENSMUST00000156328.8	2288	14	-20	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	6.80062649393857	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGTCCTGTCTGGCA	NA	False	NA	18	True	AATAAA	-18	NA	98337873	98346199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98338076_98341591_98341749_98341853_98342005_98342131_98342289_98342420_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345223_98345312_98345408_98345503_98345684
ES_00007515	chr11	+	2148	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573379	98586805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ES_00007524	chr11	+	2107	3	FSM	ENSMUSG00000038020.6	ENSMUST00000139889.2	2077	3	19	-49	19	49	multi-exon	FALSE	canonical	0	0	junction_2	0.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGTTGAGAGAGGGAATA	256	False	NA	NA	False	NA	NA	NA	98741176	98743874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98741256_98741610_98741666_98741901
ES_00007530	chr11	+	3240	8	FSM	ENSMUSG00000037992.17	ENSMUST00000107473.3	3238	8	-2	0	-2	0	multi-exon	FALSE	canonical	3	97	junction_1	54.9043695521437	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGCCTCTCTGCCT	7436	False	NA	14	True	AATAAA	-19	NA	98851235	98865768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98851960_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ES_00007533	chr11	+	1364	2	Genic_Genomic	ENSMUSG00000086688.5	novel	948	1	NA	NA	4	940	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATGGAAAAATATTCAACA	NA	False	NA	NA	False	AATAAA	-21	NA	99822991	99824875	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_99824159_99824678
ES_00007542	chr11	+	2339	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	18	0	18	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	19	True	AATAAA	-15	NA	100465747	100472554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
ES_00007546	chr11	+	3919	19	ISM	ENSMUSG00000004043.15	ENSMUST00000107356.8	3738	20	564	3	-125	-2	3prime_fragment	FALSE	canonical	3	9	junction_8	10.9994388184574	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTCTGCTTCCTGGT	NA	False	NA	11	True	AATAAA	-28	NA	100751045	100775992	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887_100772993_100774659
ES_00007547	chr11	+	3603	18	FSM	ENSMUSG00000004043.15	ENSMUST00000107357.4	3605	18	0	2	0	-2	multi-exon	FALSE	canonical	3	8	junction_16	10.1053276571729	4866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTCTGCTTCCTGGT	NA	False	NA	11	True	AATAAA	-28	NA	100751309	100775992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772887_100772993_100774659
ES_00007551	chr11	+	3978	21	NIC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	127	junction_18	25.9536124653197	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900289	100954545	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
ES_00007555	chr11	+	868	3	ISM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	763	10	763	-10	3prime_fragment	FALSE	canonical	3	10	junction_1	7	1008	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCATGTATCATGTGGAG	120	False	NA	NA	False	NA	NA	NA	100969999	100971343	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100970109_100970485_100970661_100970759
ES_00007560	chr11	+	1983	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	-18	0	5	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8228	False	NA	18	True	AATAAA	-22	NA	100978107	100983033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ES_00007561	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1230	False	NA	16	True	AATAAA	-19	NA	101010763	101017245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ES_00007562	chr11	+	1754	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	90.3044295702044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCTTTGTTTGTGACT	1651	False	NA	NA	False	AATAAA	-22	NA	101046732	101052613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
ES_00007563	chr11	+	1179	4	FSM	ENSMUSG00000001240.14	ENSMUST00000129680.8	1178	4	-3	2	-3	-2	multi-exon	FALSE	canonical	2	5	junction_2	6.16441400296898	485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGCCTTCCTAGTGGG	NA	False	NA	15	True	AATAAA	-16	NA	101136850	101139074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101137399_101137880_101137971_101138411_101138515_101138636
ES_00007565	chr11	+	619	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	-4	0	-4	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144528	101148875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
ES_00007567	chr11	+	1128	6	FSM	ENSMUSG00000078656.12	ENSMUST00000107280.11	876	6	-30	-222	-2	0	multi-exon	FALSE	canonical	3	35	junction_2	474.329252734849	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144530	101150371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101144634_101144856_101145003_101145744_101145823_101146834_101146924_101147703_101147780_101149735
ES_00007568	chr11	+	1244	6	FSM	ENSMUSG00000078656.12	ENSMUST00000100414.12	1220	6	-24	0	-2	0	multi-exon	FALSE	canonical	3	11	junction_5	486.921595331322	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144530	101150371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149595
ES_00007570	chr11	+	2335	7	FSM	ENSMUSG00000078653.5	ENSMUST00000103107.5	2335	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	3.09120616516523	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTATTGTAAACATG	NA	False	NA	9	True	AATAAA	-14	NA	101169921	101179527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101170307_101174217_101174294_101174546_101174719_101175585_101175749_101176490_101176636_101177679_101177777_101178230
ES_00007578	chr11	+	740	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	-8	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2381	False	NA	62	True	ATTAAA	-18	NA	101333263	101336355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
ES_00007579	chr11	+	548	2	FSM	ENSMUSG00000063316.14	ENSMUST00000152162.2	548	2	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	4817	False	NA	62	True	ATTAAA	-18	NA	101335699	101336355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101336157_101336264
ES_00007583	chr11	+	1398	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101358996	101362679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ES_00007586	chr11	+	4363	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	-24	0	-24	0	multi-exon	TRUE	canonical	3	94	junction_16	37.5030852725303	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	954	False	NA	21	True	AATAAA	-24	NA	101443659	101472777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ES_00007598	chr11	+	4349	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	-24	0	7	0	multi-exon	FALSE	canonical	3	151	junction_7	24.6553097226675	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTTTATTATGACTTT	NA	False	NA	26	True	NA	NA	NA	101623751	101658184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
ES_00007608	chr11	+	2550	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	-301	0	-36	0	multi-exon	FALSE	canonical	3	94	junction_1	18.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175720	102180063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102176545_102178133_102178698_102178901
ES_00007609	chr11	+	4083	2	NIC	ENSMUSG00000034757.16	novel	2249	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	131	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175776	102180063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_102178698_102178901
ES_00007610	chr11	+	1816	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107102.8	1837	11	21	0	21	0	multi-exon	FALSE	canonical	3	49	junction_10	57.4930430573996	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7430	False	NA	11	True	NA	NA	NA	102284249	102292580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
ES_00007616	chr11	+	647	5	FSM	ENSMUSG00000051455.14	ENSMUST00000155813.2	647	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	12.0908022893437	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGTAGATACATCTATC	NA	False	NA	NA	False	NA	NA	NA	102556448	102564950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102556597_102557161_102557312_102559127_102559286_102563009_102563115_102564864
ES_00007621	chr11	+	2071	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	12	0	6	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992519	103003026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ES_00007622	chr11	+	2242	11	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	-5	0	intron_retention	FALSE	canonical	3	42	junction_2	36.0373417443629	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992529	103003023	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_102992615_102993507_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ES_00007627	chr11	+	2049	3	FSM	ENSMUSG00000043372.13	ENSMUST00000107037.8	1221	3	-143	-685	-143	0	multi-exon	FALSE	canonical	3	13	junction_1	7	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGAACTTGTGGCCTG	NA	False	NA	-10	True	NA	NA	NA	103023996	103030702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_103024249_103024860_103024968_103029012
ES_00007632	chr11	+	3969	27	FSM	ENSMUSG00000055805.16	ENSMUST00000218163.2	3824	27	-145	0	-145	0	multi-exon	FALSE	canonical	3	15	junction_15	7.11320132824136	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTCGGCTCGGTGCCT	4903	False	NA	23	True	AATAAA	-16	NA	103061787	103089727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103073841_103073860_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084273_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
ES_00007638	chr11	+	4704	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8378	0	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	9478	False	NA	NA	False	AATAAA	-19	NA	104200480	104222916	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00007639	chr11	+	4742	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8173	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	9683	False	NA	NA	False	AATAAA	-19	NA	104200685	104222916	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00007642	chr11	+	914	6	ISM	ENSMUSG00000020689.5	ENSMUST00000021028.5	5784	15	112	32491	112	-31828	5prime_fragment	FALSE	canonical	3	6	junction_5	2.65329983228432	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGCCTGGCCCCTACC	NA	False	NA	NA	False	NA	NA	NA	104498937	104528811	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_104498991_104514236_104514323_104522999_104523196_104524223_104524477_104527877_104528041_104528648
ES_00007645	chr11	+	2576	8	FSM	ENSMUSG00000020691.14	ENSMUST00000136214.8	2556	8	-20	0	-20	0	multi-exon	TRUE	canonical	2	5	junction_1	88.9260183225015	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017284	105031220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105018268_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ES_00007652	chr11	+	447	6	FSM	ENSMUSG00000020694.18	ENSMUST00000149459.8	425	6	-22	0	-22	0	multi-exon	FALSE	canonical	3	15	junction_1	106.198681724398	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCCAGGAACCAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	105073020	105101384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105073185_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370
ES_00007656	chr11	+	4884	25	FSM	ENSMUSG00000020681.15	ENSMUST00000001963.14	4906	25	0	22	0	-22	multi-exon	FALSE	canonical	0	0	junction_3	2.26691175145591	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAGCACTGTTGAAGT	NA	False	NA	NA	False	AATAAA	-25	NA	105858770	105880768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105859072_105859732_105859901_105860526_105860621_105861378_105861523_105862117_105862310_105862842_105862941_105863186_105863360_105863686_105863911_105864217_105864363_105864604_105864704_105864929_105865053_105865492_105865705_105866361_105866499_105867370_105867530_105867777_105867866_105869995_105870140_105870306_105870499_105872323_105872422_105872593_105872767_105875870_105876095_105876398_105876544_105876815_105876915_105878841_105878965_105879254_105879443_105879627
ES_00007658	chr11	+	1392	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	-9	0	-9	0	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	865	False	NA	26	True	NA	NA	NA	105956877	105964438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
ES_00007663	chr11	+	1394	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
ES_00007665	chr11	+	289	1	FSM	ENSMUSG00000065126.3	ENSMUST00000083192.3	70	1	-70	-149	-70	149	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCTGGTGTCTTGTGTGT	4519	False	NA	24	True	AATAAA	-14	NA	106391748	106392037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_106391700_106392000
ES_00007674	chr11	+	6380	32	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-1065	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	36.7501052969107	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	9353	False	NA	9	True	AATAAA	-17	NA	107437690	107577769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ES_00007676	chr11	+	13159	33	FSM	ENSMUSG00000020721.17	ENSMUST00000106746.8	13147	33	-12	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	34.694973856994	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGAGTGTTTCTTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	107438781	107584652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ES_00007677	chr11	+	6305	33	NIC	ENSMUSG00000020721.17	novel	13147	33	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_16	39.9053567832691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	NA	False	NA	9	True	AATAAA	-17	NA	107438755	107577769	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ES_00007681	chr11	+	4433	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	5.20096144957834	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTCATCTTTGGAT	NA	False	NA	7	True	ATTAAA	-19	NA	108811633	108841609	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_108812020_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ES_00007682	chr11	+	1209	3	FSM	ENSMUSG00000020611.15	ENSMUST00000106702.4	914	3	-81	-214	-81	214	multi-exon	TRUE	canonical	3	100	junction_2	132.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACATTTAGGTTTATTG	NA	False	NA	19	True	AATAAA	-34	NA	109253575	109271515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_109254083_109256361_109256589_109271040
ES_00007683	chr11	+	6160	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	46.1976430375211	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAGCACGACGTTATT	NA	False	NA	12	True	AATAAA	-14	NA	109253656	109292195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
ES_00007689	chr11	+	3361	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	-2	0	-2	0	multi-exon	TRUE	canonical	3	1417	junction_9	119.858458191318	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109541744	109560482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ES_00007693	chr11	+	1279	8	FSM	ENSMUSG00000018661.18	ENSMUST00000063776.14	1476	8	197	0	197	0	multi-exon	FALSE	canonical	0	0	junction_1	102.010403631098	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGGTGCCTCTGCTCCTG	NA	False	NA	13	True	AATAAA	-21	NA	113540350	113553225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_113540702_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
ES_00007697	chr11	+	2069	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	-7	0	0	0	multi-exon	TRUE	canonical	3	249	junction_1	30.335622624235	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575265	113585473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ES_00007701	chr11	+	420	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	-49	0	49	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCACCTTCTGCAGCCC	NA	False	NA	77	True	NA	NA	NA	114559349	114563206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ES_00007702	chr11	+	591	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	-85	-49	0	49	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCACCTTCTGCAGCCC	NA	False	NA	77	True	NA	NA	NA	114559349	114563206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
ES_00007703	chr11	+	410	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	-16	-49	1	49	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCACCTTCTGCAGCCC	NA	False	NA	77	True	NA	NA	NA	114559435	114563206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ES_00007706	chr11	+	230	2	Intergenic	novelGene_784	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAAAGTTTTGAATGG	NA	False	NA	NA	False	NA	NA	NA	114739332	114750532	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_114739368_114750337
ES_00007710	chr11	+	3700	5	FSM	ENSMUSG00000050910.6	ENSMUST00000053288.6	3700	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	7.49583217528247	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAAGTGACCCTGGGTCT	NA	False	NA	12	True	AATAAA	-22	NA	115272741	115286958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115273228_115281336_115281450_115281688_115281838_115283484_115283650_115284171
ES_00007711	chr11	+	766	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	-28	11	-23	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCACAGGAGCCTGTTTC	NA	False	NA	5	True	AATAAA	-5	NA	115294554	115301734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ES_00007717	chr11	+	1764	6	FSM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.67097875150313	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCTCCTTCAT	3736	False	NA	28	True	NA	NA	NA	115310953	115322100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105_115320232_115321138
ES_00007722	chr11	+	2127	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	80	junction_16	299.37137842857	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455259	115474732	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473910_115474039_115474151_115474254_115474546
ES_00007725	chr11	+	805	5	FSM	ENSMUSG00000020739.12	ENSMUST00000138998.2	760	5	0	-45	0	-34	multi-exon	FALSE	canonical	3	862	junction_2	128.668177884044	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCTGACATTGCAAAAT	4168	False	NA	57	True	TTTAAA	-12	NA	115472466	115474777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ES_00007728	chr11	+	5342	32	FSM	ENSMUSG00000020747.19	ENSMUST00000093912.11	5329	32	-13	0	-13	0	multi-exon	TRUE	canonical	3	50	junction_13	18.7440729445739	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATTTCTCTCTGCTTGA	NA	False	NA	NA	False	AATAAA	-16	NA	115656245	115690192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115656380_115668073_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681792_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
ES_00007734	chr11	+	803	7	FSM	ENSMUSG00000020781.15	ENSMUST00000128266.2	803	7	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	23.4360832905159	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCTCAGAGCTCCCCT	6013	False	NA	NA	False	NA	NA	NA	115705630	115711333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115705646_115705740_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204
ES_00007736	chr11	+	3548	26	NNC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	80	junction_25	162.280576779848	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	6800	False	NA	40	True	AATAAA	-25	NA	115714874	115746606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746294
ES_00007738	chr11	+	3478	25	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-4	-18	combination_of_known_junctions	FALSE	canonical	3	54	junction_22	172.677761668954	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTCGTCTTCACTTTAA	6805	False	NA	20	True	AATAAA	-5	NA	115714879	115746586	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745888_115745932_115746017_115746080_115746291
ES_00007740	chr11	+	713	4	FSM	ENSMUSG00000034427.18	ENSMUST00000125835.3	713	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1.69967317119759	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTGTCACTCCTCTTG	1005	False	NA	NA	False	AATAAA	-20	NA	115777261	115778272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115777336_115777409_115777552_115777687_115777800_115777887
ES_00007741	chr11	+	2268	19	ISM	ENSMUSG00000034427.18	ENSMUST00000222123.2	5154	43	8902	1	0	-1	3prime_fragment	FALSE	canonical	2	5	junction_15	3.67003212553639	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTGTGTGAGCATGTG	1005	False	NA	NA	False	AGTAAA	-13	NA	115777261	115783417	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_115777336_115777409_115777552_115777687_115777800_115777887_115778031_115778390_115778534_115778692_115778757_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
ES_00007747	chr11	+	3726	16	FSM	ENSMUSG00000020770.14	ENSMUST00000106452.2	3696	16	-30	0	-30	0	multi-exon	FALSE	canonical	3	42	junction_8	23.4630679058719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8792	False	NA	19	True	AATAAA	-13	NA	115921117	115952040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943946_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
ES_00007754	chr11	+	615	1	FSM	ENSMUSG00000081929.2	ENSMUST00000121547.2	456	1	-98	-61	-98	61	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	AATAAA	-29	NA	116273477	116274092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116273500_116274100
ES_00007757	chr11	+	2021	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	-38	5	27	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTGGTAGCATTGTG	NA	False	NA	-2	True	AATAAA	-11	NA	116562456	116566619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
ES_00007758	chr11	+	1604	4	FSM	ENSMUSG00000020812.19	ENSMUST00000239363.2	1631	4	27	0	27	0	multi-exon	FALSE	canonical	3	112	junction_3	32.5371582450998	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTGGTAGCATTGTG	NA	False	NA	-2	True	AATAAA	-11	NA	116562456	116566619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116563565_116564763_116564898_116565125_116565202_116566333
ES_00007759	chr11	+	887	6	FSM	ENSMUSG00000020812.19	ENSMUST00000139934.8	865	6	-22	0	-22	0	multi-exon	FALSE	canonical	3	112	junction_5	27.7632851082144	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562463	116566624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ES_00007760	chr11	+	1272	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239226.2	1257	5	-15	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	28.7347785792757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562485	116566624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ES_00007761	chr11	+	876	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	-19	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTAGCATTGTGGGTATA	NA	False	NA	4	True	AATAAA	-17	NA	116562494	116566625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
ES_00007769	chr11	+	3298	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_12	6.07076326887045	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116744645	116766461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ES_00007773	chr11	+	567	2	NNC	ENSMUSG00000020818.17	novel	3298	13	NA	NA	6686	7600	at_least_one_novel_splicesite	TRUE	canonical	3	353	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116765879	116774061	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_116766335_116773949
ES_00007775	chr11	+	641	6	FSM	ENSMUSG00000043857.17	ENSMUST00000136584.2	641	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	7.00285656000464	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGGCAAGCCGCACGT	3827	False	NA	NA	False	NA	NA	NA	116857621	116869219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116857665_116859210_116859345_116864126_116864258_116868506_116868663_116868887_116869035_116869189
ES_00007776	chr11	+	2566	7	FSM	ENSMUSG00000043857.17	ENSMUST00000126757.2	2568	7	2	0	2	0	multi-exon	FALSE	canonical	3	13	junction_1	8.89600409672168	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAAATTGGTGGGATTT	NA	False	NA	NA	False	AATAAA	-24	NA	116863900	116877766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116864258_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ES_00007777	chr11	+	2414	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	-1815	1	-1040	0	multi-exon	FALSE	canonical	3	615	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	NA	False	NA	19	True	AATAAA	-15	NA	116965793	116969780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116968029_116969601
ES_00007780	chr11	+	1685	2	NIC	ENSMUSG00000086859.5	novel	1090	3	NA	NA	32	0	intron_retention	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	926	False	NA	19	True	AATAAA	-15	NA	116967659	116969780	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_116969166_116969601
ES_00007782	chr11	+	2889	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	-23	0	-19	0	multi-exon	TRUE	canonical	3	28	junction_16	82.8488599423673	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	5	True	AATAAA	-15	NA	117005974	117050091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
ES_00007784	chr11	+	4654	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_5	24.9420662068455	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTCCTTTTCTTCTTGG	NA	False	NA	8	True	AATAAA	-18	NA	117006063	117050094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
ES_00007787	chr11	+	3836	11	FSM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	-57	5	-57	0	multi-exon	FALSE	canonical	3	88	junction_1	218.744622791053	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTTTTTTCTGGAGT	639	False	NA	86	True	AATAAA	-11	NA	117157014	117253134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ES_00007789	chr11	+	2946	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	-22	0	-22	0	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTTTTTTCTGGAGT	NA	False	NA	86	True	AATAAA	-11	NA	117222523	117253134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ES_00007790	chr11	+	2996	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	-80	16	-80	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTTTTTTCTGGAGT	NA	False	NA	86	True	AATAAA	-11	NA	117223090	117253134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ES_00007801	chr11	+	1402	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700521	117705109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
ES_00007805	chr11	+	2183	10	NIC	ENSMUSG00000017718.16	novel	2327	11	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	15.3984126166015	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTCTGTTTGTTT	NA	False	NA	15	True	NA	NA	NA	117716802	117730734	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_117716833_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ES_00007808	chr11	+	3334	3	FSM	ENSMUSG00000017716.16	ENSMUST00000093906.5	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	252.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTCTTGGAGAAATGG	NA	False	NA	40	True	AATAAA	-29	NA	117740144	117746569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117740288_117740579_117740690_117743488
ES_00007810	chr11	+	2197	10	FSM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	0	0	0	multi-exon	TRUE	canonical	1	46	junction_7	99.2782596518803	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877710	117914837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905472_117905549_117910432_117910559_117914230
ES_00007811	chr11	+	2044	10	NNC	ENSMUSG00000017715.12	novel	2863	10	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	102.120601662694	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877712	117914837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914454
ES_00007812	chr11	+	3809	3	FSM	ENSMUSG00000017715.12	ENSMUST00000155507.2	3113	3	-696	0	-696	0	multi-exon	FALSE	canonical	1	116	junction_2	125.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117902472	117914837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117905549_117910432_117910559_117914230
ES_00007813	chr11	+	3941	14	NIC	ENSMUSG00000033857.13	novel	4064	14	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	24.1545810765215	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAAAATGAGATGTTGA	NA	False	NA	NA	False	AATAAA	-9	NA	118367771	118380026	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377270_118377380_118377647_118377763_118377916
ES_00007823	chr11	+	2685	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	-4	14	-4	-14	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGGTCCATGTGTGGA	NA	False	NA	NA	False	ATTAAA	-36	NA	119246378	119271891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
ES_00007827	chr11	+	5140	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	-14	0	-14	0	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATACACTACCAAC	6523	False	NA	NA	False	NA	NA	NA	119382441	119402263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
ES_00007830	chr11	+	3277	21	NIC	ENSMUSG00000025583.16	novel	6594	34	NA	NA	71	-9	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	33.7240270430446	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTTTGTATTTGTTGC	2375	False	NA	NA	False	ATTAAA	-16	NA	119494045	119758206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119757979
ES_00007835	chr11	+	512	3	FSM	ENSMUSG00000078572.4	ENSMUST00000185558.2	427	3	-34	-51	-18	0	multi-exon	FALSE	canonical	3	12	junction_2	466	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGGAACTGGTCTCTC	NA	False	NA	6	True	TATAAA	-6	NA	119989735	119991240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119989892_119989973_119990089_119990999
ES_00007841	chr11	+	2899	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106203.9	2903	22	4	0	4	0	multi-exon	FALSE	canonical	3	105	junction_14	76.3896503775692	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8186	False	NA	13	True	AATAAA	-14	NA	120358464	120374805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369912_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ES_00007843	chr11	+	1672	10	FSM	ENSMUSG00000025792.10	ENSMUST00000144706.8	1658	10	-14	0	-14	0	multi-exon	FALSE	canonical	3	78	junction_5	8.28355503094036	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTCTGCTTACCAAATG	NA	False	NA	NA	False	NA	NA	NA	120382699	120389419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120388288_120388745_120388803_120388896
ES_00007846	chr11	+	3190	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	0	39	0	-39	multi-exon	FALSE	canonical	3	903	junction_1	470.5	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTCAGGATATGTAAACCA	3900	False	NA	NA	False	NA	NA	NA	120489246	120498985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120489431_120490067_120490195_120496106
ES_00007851	chr11	+	1690	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563881	120600270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ES_00007853	chr11	+	468	3	FSM	ENSMUSG00000025142.19	ENSMUST00000152990.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	3	981	junction_1	57	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGCTGAGTTTCTTTTC	797	False	NA	11	True	AATAAA	-15	NA	120599483	120600268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120599536_120599755_120600073_120600169
ES_00007854	chr11	+	617	3	FSM	ENSMUSG00000025142.19	ENSMUST00000151531.2	520	3	-102	5	0	0	multi-exon	FALSE	canonical	3	1054	junction_1	20.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGCTGAGTTTCTTTTC	797	False	NA	11	True	AATAAA	-15	NA	120599483	120600268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120599826_120599896_120600073_120600169
ES_00007862	chr11	+	1598	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	7553	multi-exon	FALSE	non_canonical	0	0	junction_2	980	150	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAACAAACAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120653617	120662798	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_120653817_120653849_120655213_120662762
ES_00007863	chr11	+	1598	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	72850	multi-exon	FALSE	non_canonical	0	0	junction_2	980	147	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAGAAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	120653617	120728095	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_120653817_120653849_120655218_120728064
ES_00007865	chr11	+	1928	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	-3	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	150.079122650539	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1391	False	NA	-3	True	ATTAAA	-14	NA	120675097	120679923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
ES_00007866	chr11	+	1856	14	FSM	ENSMUSG00000025156.18	ENSMUST00000208737.2	1843	14	-13	0	0	0	multi-exon	FALSE	canonical	3	121	junction_6	299.627579489159	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGGCTCCTTTCCTTT	1391	False	NA	1	True	ATTAAA	-18	NA	120675097	120679927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677837_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ES_00007867	chr11	+	1827	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1424	False	NA	2	True	ATTAAA	-19	NA	120675130	120679928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ES_00007868	chr11	+	2000	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1634	False	NA	2	True	ATTAAA	-19	NA	120675340	120679928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ES_00007870	chr11	+	996	5	FSM	ENSMUSG00000025161.17	ENSMUST00000154187.8	974	5	-22	0	-22	0	multi-exon	FALSE	canonical	3	280	junction_1	35.9096087419509	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCTATGCTAAGGATATG	NA	False	NA	NA	False	NA	NA	NA	120839856	120847573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180
ES_00007871	chr11	+	4202	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	0	133	0	-133	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCTGTACCCATATTTC	NA	False	NA	NA	False	TTTAAA	-41	NA	120839906	120851561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ES_00007872	chr11	+	3000	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	-149	-465	-135	465	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAATTTGCCAATCTCAC	NA	False	NA	NA	False	NA	NA	NA	120839743	120850291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ES_00007873	chr11	+	1745	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	1	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036968	121039145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_121037049_121037353_121037428_121037554
ES_00007876	chr11	+	5058	9	NNC	ENSMUSG00000039275.10	novel	5029	9	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_8	71.1634342552409	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATACAGAGTATCATTGT	4630	False	NA	NA	False	AATAAA	-20	NA	121150783	121200722	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_121151349_121176247_121176443_121178756_121178905_121181569_121181717_121186854_121187049_121187739_121187916_121189384_121189682_121190409_121190620_121197596
ES_00007879	chr11	+	2500	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	20	0	20	0	multi-exon	TRUE	canonical	3	26	junction_4	7.30479294709987	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAGACTGGTATATTT	3877	False	NA	NA	False	AATAAA	-20	NA	121312246	121322114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
ES_00007883	chr11	-	3898	32	FSM	ENSMUSG00000023764.19	ENSMUST00000066391.14	3898	32	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_15	27.928964448237	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTTTCATACAAAAT	7979	False	NA	5	True	AATGAA	-22	NA	3143463	3081880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ES_00007884	chr11	-	381	3	FSM	ENSMUSG00000023764.19	ENSMUST00000146888.2	733	3	352	0	-14	0	multi-exon	FALSE	canonical	3	45	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCATGGCCATTGCCCA	8421	False	NA	NA	False	NA	NA	NA	3096370	3094880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3094971_3095240_3095323_3096161
ES_00007885	chr11	-	1716	1	FSM	ENSMUSG00000081208.2	ENSMUST00000120853.2	1214	1	-243	-259	-243	259	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTGAAAGACCCCCGAA	3593	False	NA	NA	False	NA	NA	NA	3101198	3099482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3099500_3101200
ES_00007886	chr11	-	840	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	0	-9	0	9	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACTTTGTTATTTTTAAA	8018	False	NA	NA	False	NA	NA	NA	3143424	3135558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ES_00007887	chr11	-	1561	10	NNC	ENSMUSG00000020457.14	novel	1546	9	NA	NA	0	26556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	618.233884385569	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACGGCTCAGCTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	3216393	3173350	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3173382_3199922_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ES_00007888	chr11	-	1575	10	NNC	ENSMUSG00000020457.14	novel	1546	9	NA	NA	0	15965	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	618.233884385569	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAGAAACAAAG	NA	False	NA	NA	False	NA	NA	NA	3216393	3183941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3183986_3199921_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ES_00007889	chr11	-	1546	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTGAGGTTTGCTGTG	NA	False	NA	-1	True	TATAAA	-34	NA	3216393	3199906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ES_00007892	chr11	-	3704	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	0	-11	0	11	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCAAAGTGACTTAGGGC	9814	False	NA	5	True	AATAAA	-30	NA	3321376	3294244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
ES_00007893	chr11	-	3525	16	FSM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	0	-11	0	11	multi-exon	FALSE	canonical	3	97	junction_14	50.0611182012104	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCAAAGTGACTTAGGGC	NA	False	NA	5	True	AATAAA	-30	NA	3359174	3294244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
ES_00007895	chr11	-	2788	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	0	-1	0	1	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTGGAGCTTGTGT	6815	False	NA	-4	True	ATTAAA	-15	NA	3402363	3365980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
ES_00007896	chr11	-	2735	6	NIC	ENSMUSG00000020448.17	novel	2787	7	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	55.8161267018771	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6848	False	NA	-5	True	ATTAAA	-14	NA	3402330	3365981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3382399_3382621_3402208
ES_00007897	chr11	-	3336	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	0	-1	0	1	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTCTCTGCTGT	8137	False	NA	-5	True	GATAAA	-18	NA	3489292	3467521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
ES_00007898	chr11	-	3118	20	FSM	ENSMUSG00000020439.18	ENSMUST00000075118.10	3117	20	0	-1	0	1	multi-exon	FALSE	canonical	3	4	junction_1	23.2906482011302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTCTCTGCTGT	8190	False	NA	-5	True	GATAAA	-18	NA	3489239	3467521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3467828_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
ES_00007901	chr11	-	5138	4	NNC	ENSMUSG00000056579.19	novel	5112	3	NA	NA	0	24835	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1146.47556547108	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCCAGGCCTCAGGTCA	NA	False	NA	NA	False	NA	NA	NA	3597530	3564949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3564979_3589796_3593180_3594771_3595524_3596556
ES_00007902	chr11	-	541	1	FSM	ENSMUSG00000079889.5	ENSMUST00000116005.3	431	1	-99	-11	-99	11	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGGTCCACATCTGCCC	NA	False	NA	NA	False	NA	NA	NA	3583541	3583000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3583000_3583500
ES_00007903	chr11	-	6719	2	FSM	ENSMUSG00000056579.19	ENSMUST00000132077.4	6719	2	0	0	0	0	multi-exon	FALSE	canonical	3	2652	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTTCTATTACTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	3597536	3589784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3595524_3596556
ES_00007905	chr11	-	5121	3	FSM	ENSMUSG00000056579.19	ENSMUST00000153313.9	5112	3	0	-9	0	0	multi-exon	FALSE	canonical	3	2126	junction_1	263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTTCTATTACTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	3597530	3589784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3593180_3594771_3595524_3596556
ES_00007907	chr11	-	3060	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	0	-1	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCTGTCATTCCTTGGG	NA	False	NA	NA	False	AATAAA	-17	NA	3864664	3857020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3857985_3862568
ES_00007909	chr11	-	1950	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109988.2	1957	10	9	-2	-6	2	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACGTAGAGTCCTGGTGC	NA	False	NA	-9	True	ATTAAA	-19	NA	3881795	3867189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881724
ES_00007910	chr11	-	1951	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	-2	0	2	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACGTAGAGTCCTGGTGC	NA	False	NA	-9	True	ATTAAA	-19	NA	3882044	3867189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
ES_00007911	chr11	-	1944	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	85	-2	4	2	multi-exon	FALSE	canonical	3	40	junction_9	35.4989132158461	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACGTAGAGTCCTGGTGC	NA	False	NA	-9	True	ATTAAA	-19	NA	3882074	3867189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
ES_00007912	chr11	-	1941	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109991.8	1943	10	4	-2	4	2	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACGTAGAGTCCTGGTGC	NA	False	NA	-9	True	ATTAAA	-19	NA	3882074	3867189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3882012
ES_00007913	chr11	-	1865	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	46.5015597773709	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882021	3867191	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881527_3881975
ES_00007914	chr11	-	1892	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
ES_00007915	chr11	-	1416	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	-5	0	5	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCATTTCCTCTTCCTGG	NA	False	NA	6	True	AATAAA	-22	NA	4045445	4041474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ES_00007916	chr11	-	2775	13	NNC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	10	-16	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	10.9924216318941	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATTTTCAAAGCAAAGAGC	NA	False	NA	-16	True	AATAAA	-6	NA	4073405	4047054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624_4068752_4073165
ES_00007917	chr11	-	704	1	FSM	ENSMUSG00000083838.2	ENSMUST00000118304.2	779	1	207	-132	207	132	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGACTACTTTTGGTGGAGT	NA	False	NA	NA	False	AAAAAG	-45	NA	4079943	4079239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4079200_4079900
ES_00007919	chr11	-	1984	10	NIC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	-10	89	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	73.2602329261589	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCGTGTGTATTTCAG	NA	False	NA	69	True	GATAAA	-29	NA	4391092	4295724	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ES_00007920	chr11	-	2038	11	FSM	ENSMUSG00000020419.12	ENSMUST00000109949.8	1343	11	-126	-569	-103	0	multi-exon	FALSE	canonical	3	44	junction_4	69.004347689113	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTTGATAATTTATGT	NA	False	NA	-20	True	AATAAA	-11	NA	4391208	4295813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ES_00007921	chr11	-	583	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391105	4374247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ES_00007923	chr11	-	5546	18	FSM	ENSMUSG00000034354.18	ENSMUST00000040448.13	5534	18	0	-12	0	5	multi-exon	TRUE	canonical	3	15	junction_17	53.6004054108513	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTAATTCTTTGCCCT	1321	False	NA	-7	True	AATAAA	-32	NA	4496268	4430862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4496188
ES_00007924	chr11	-	5679	18	FSM	ENSMUSG00000034354.18	ENSMUST00000109943.10	5674	18	0	-5	0	5	multi-exon	FALSE	canonical	3	144	junction_2	25.6297837124855	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTAATTCTTTGCCCT	NA	False	NA	-7	True	AATAAA	-32	NA	4544815	4430862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4544602
ES_00007925	chr11	-	5786	19	NIC	ENSMUSG00000034354.18	novel	5674	18	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	60	junction_3	50.097466730759	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGAGTTCTAATTCTTTG	NA	False	NA	-11	True	AATAAA	-28	NA	4544815	4430866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_4432940_4435362_4435452_4435878_4435990_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4544602
ES_00007928	chr11	-	510	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	31	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCTTTTGCACGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	4654334	4651974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4652221_4653903_4653990_4654156
ES_00007929	chr11	-	2628	5	FSM	ENSMUSG00000009075.3	ENSMUST00000009219.3	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	5.21416340365355	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGCCCTGGTTCTGTCT	7564	False	NA	3	True	NA	NA	NA	4696778	4686891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4688949_4689123_4689278_4689553_4689667_4690368_4690513_4696618
ES_00007930	chr11	-	4165	15	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_13	112.792929290622	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTCGAGTTTTTTTTTT	9187	False	NA	-8	True	AATAAA	-21	NA	4799194	4715844	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4770367_4770494_4798871
ES_00007931	chr11	-	4724	16	FSM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	0	-4	0	4	multi-exon	TRUE	canonical	3	105	junction_1	67.5504749551524	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGAGTTTTTTTTTTTTTT	8845	False	NA	-4	True	AATAAA	-25	NA	4799536	4715840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4718274_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ES_00007932	chr11	-	2394	17	FSM	ENSMUSG00000009073.17	ENSMUST00000056290.13	2394	17	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	34.4219565648148	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGGGGGGGAAAAAAAAA	9396	False	NA	-6	True	NA	NA	NA	4798985	4717664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ES_00007933	chr11	-	2470	17	FSM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	88.5606915835124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTCCCATTTTTGT	9016	False	NA	NA	False	NA	NA	NA	4799365	4722333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4722639_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ES_00007934	chr11	-	1808	16	FSM	ENSMUSG00000009073.17	ENSMUST00000093374.11	1795	16	0	-13	0	13	multi-exon	FALSE	canonical	3	6	junction_1	91.6800232693397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGGATTATCATGCCTAA	NA	False	NA	NA	False	ATTAAA	-36	NA	4770396	4729800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4730035_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367
ES_00007937	chr11	-	3994	4	FSM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	3.09120616516523	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTTGTTTTTACTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	4898064	4888753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4891416_4893850_4893976_4895110_4895311_4897057
ES_00007938	chr11	-	2539	6	FSM	ENSMUSG00000034201.14	ENSMUST00000109895.2	2530	6	0	-9	0	0	multi-exon	FALSE	canonical	3	85	junction_5	36.2049720342386	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTTGTTTTTATTAC	NA	False	NA	0	True	AAGAAA	-25	NA	5015277	5010371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
ES_00007939	chr11	-	3273	5	ISM	ENSMUSG00000034201.14	ENSMUST00000109895.2	2530	6	0	-7	0	-2	intron_retention	FALSE	canonical	3	136	junction_3	19.9546360528074	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCATTTGTTTTTATT	NA	False	NA	-2	True	AAGAAA	-23	NA	5015277	5010373	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825
ES_00007940	chr11	-	2847	7	FSM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	62.4357447478784	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTTGTTTTTATTAC	NA	False	NA	0	True	AAGAAA	-25	NA	5015327	5010371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5014836_5015095_5015214
ES_00007941	chr11	-	2730	5	FSM	ENSMUSG00000034201.14	ENSMUST00000156196.2	2730	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	64.4801325991192	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGGATTCTAGAGTTAA	NA	False	NA	17	True	NA	NA	NA	5014851	5010469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5014836
ES_00007942	chr11	-	3057	6	NIC	ENSMUSG00000034201.14	novel	2530	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	54	junction_5	47.3894503027836	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGGATTCTAGAGTTAA	NA	False	NA	17	True	NA	NA	NA	5015277	5010469	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5015095_5015214
ES_00007943	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049266	5019688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ES_00007944	chr11	-	2269	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049067	5019697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ES_00007945	chr11	-	649	3	FSM	ENSMUSG00000009079.17	ENSMUST00000130118.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	4881	junction_2	44.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTATGATTATTCCTTG	NA	False	NA	NA	False	TTTAAA	-32	NA	5020891	5019973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5020104_5020227_5020481_5020625
ES_00007946	chr11	-	1033	5	FSM	ENSMUSG00000009079.17	ENSMUST00000141002.8	1033	5	0	0	0	0	multi-exon	FALSE	canonical	3	3872	junction_4	288.767207279497	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGAGACAGAGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	5029528	5021106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919
ES_00007953	chr11	-	4860	9	FSM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	0	-4	0	4	multi-exon	FALSE	canonical	3	45	junction_1	7.36121593216773	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGGCCAGGCTGTCATT	NA	False	NA	0	True	AATAAA	-25	NA	5211558	5141547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5145122_5148309_5148395_5149501_5149712_5151696_5152030_5159938_5160093_5165406_5165532_5188410_5188503_5193774_5193938_5211434
ES_00007954	chr11	-	1333	1	Genic_Genomic	ENSMUSG00000041961.15	novel	NA	NA	NA	NA	104176	92	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATTAACAGATTCCAAGT	2237	False	NA	89	True	NA	NA	NA	5227564	5226231	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_5226200_5227600
ES_00007955	chr11	-	6311	9	FSM	ENSMUSG00000041961.15	ENSMUST00000109867.8	6311	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	9.67923034130297	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGTGGTCATTGCTGTG	6432	False	NA	-3	True	AATACA	-19	NA	5394847	5226323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5229762_5230807_5232506_5233337_5233441_5236093_5236262_5237372_5237484_5239025_5239158_5239662_5239738_5288637_5288764_5394387
ES_00007957	chr11	-	995	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAACAGTGGAAGTAC	NA	False	NA	NA	False	ATTAAA	-11	NA	5657687	5653982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
ES_00007958	chr11	-	703	3	FSM	ENSMUSG00000020477.11	ENSMUST00000020770.11	700	3	0	-3	0	3	multi-exon	FALSE	canonical	3	2385	junction_2	231.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGGTCTCTCTCTCTTT	NA	False	NA	-22	True	AATAAA	-21	NA	5657667	5654322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5654733_5657297_5657410_5657486
ES_00007961	chr11	-	4885	6	FSM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	0	204	0	-204	multi-exon	FALSE	canonical	3	47	junction_5	4.96386945839634	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATAGCTTAGAAAATGACT	8847	False	NA	NA	False	NA	NA	NA	5691150	5663620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5691096
ES_00007963	chr11	-	845	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	0	-5	0	5	multi-exon	FALSE	canonical	3	39	junction_1	6	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTTCATATAGCTGAGCG	8648	False	NA	NA	False	AATAAA	-20	NA	5753733	5751634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5751840_5752998_5753180_5753274
ES_00007968	chr11	-	1606	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	36	4	36	-4	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCTTGTTCACTTGGGC	9541	False	NA	-2	True	AATAAA	-21	NA	5828256	5822183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ES_00007972	chr11	-	732	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	79	0	79	0	3prime_fragment	FALSE	canonical	3	38	junction_4	23.9115035077261	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848703	5846636	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
ES_00007973	chr11	-	598	7	FSM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	-8	0	-8	0	multi-exon	FALSE	canonical	3	13	junction_6	30.6671195618731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848790	5846636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425_5848540_5848760
ES_00007974	chr11	-	3917	20	NIC	ENSMUSG00000057897.15	novel	4004	20	NA	NA	0	0	intron_retention	FALSE	canonical	3	32	junction_5	33.5580697347349	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2964	False	NA	NA	False	NA	NA	NA	6015658	5919671	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ES_00007975	chr11	-	4004	20	FSM	ENSMUSG00000057897.15	ENSMUST00000090443.10	4004	20	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	42.1055921039782	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2874	False	NA	NA	False	NA	NA	NA	6015748	5919671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5929672_5929722_5932500_5932573_5932720_5932759_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ES_00007977	chr11	-	1875	19	FSM	ENSMUSG00000057897.15	ENSMUST00000002817.12	1872	19	0	-3	0	0	multi-exon	FALSE	canonical	3	94	junction_4	16.5324223165972	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATGACAACGACAACCA	2880	False	NA	-144	True	TTTAAA	-6	NA	6015742	5921668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ES_00007980	chr11	-	482	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	-29	-60	-29	60	mono-exon	FALSE	NA	NA	NA	NA	NA	363	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAACAAAACCTCCCCAAA	NA	False	NA	9	True	AATAAA	-43	NA	6123065	6122583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6122600_6123100
ES_00007982	chr11	-	1956	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4489	False	NA	-2	True	NA	NA	NA	6217772	6208918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
ES_00007985	chr11	-	2009	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	-6	0	6	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTTTGTTTTTTTTAA	5338	False	NA	NA	False	ATTAAA	-30	NA	6224870	6220362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ES_00007988	chr11	-	256	2	Intergenic	novelGene_454	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAGAGACCGCTCAGC	5096	False	NA	NA	False	NA	NA	NA	6439315	6374615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_6374647_6439090
ES_00007989	chr11	-	1637	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	0	-4	0	4	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCCTGGTCCTGAGAAT	NA	False	NA	-1	True	AATAAA	-28	NA	6394443	6377224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ES_00007990	chr11	-	519	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394352	6378137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
ES_00007991	chr11	-	8480	1	FSM	ENSMUSG00000094483.3	ENSMUST00000179343.3	8319	1	-159	-2	-159	2	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCCTTGCCTCTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	6426076	6417596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6417600_6426100
ES_00007992	chr11	-	1636	2	FSM	ENSMUSG00000085156.9	ENSMUST00000129570.3	1631	2	0	-5	0	4	multi-exon	FALSE	canonical	3	446	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATCGGGTTTGAAGTC	NA	False	NA	3	True	NA	NA	NA	6477759	6475586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6475818_6476354
ES_00007993	chr11	-	775	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	0	-4	0	4	multi-exon	FALSE	canonical	3	446	junction_1	1	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATCGGGTTTGAAGTC	NA	False	NA	3	True	NA	NA	NA	6478766	6475586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6475818_6476354_6476438_6478305
ES_00007994	chr11	-	615	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	-4	0	4	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATCGGGTTTGAAGTC	NA	False	NA	3	True	NA	NA	NA	6478779	6475586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
ES_00007995	chr11	-	1540	2	FSM	ENSMUSG00000085156.9	ENSMUST00000134527.3	1540	2	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCACTGTCTCCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	6478763	6477050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6478375_6478547
ES_00007996	chr11	-	3439	12	NIC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	236	0	intron_retention	FALSE	canonical	3	75	junction_11	140.71599672936	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCACTGGCTTTTCT	NA	False	NA	-5	True	AATAAA	-19	NA	6575786	6565597	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575383
ES_00007997	chr11	-	2350	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	-3	0	2	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCACTGGCTTTTCTTT	NA	False	NA	-3	True	AATAAA	-21	NA	6576067	6565595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ES_00007998	chr11	-	2355	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_8	147.44311131545	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576030	6566422	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ES_00007999	chr11	-	2290	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576043	6566422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ES_00008001	chr11	-	853	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGATAAGGCCTATTT	NA	False	NA	-12	True	AATAAA	-6	NA	6576022	6573199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
ES_00008006	chr11	-	7535	31	NNC	ENSMUSG00000020422.15	novel	7897	31	NA	NA	19511	-5	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_30	15.8334736835885	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAATGAAGCATTTTTTTA	3603	False	NA	NA	False	AATAAA	-19	NA	8555376	8381656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8382706_8382750_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8555105
ES_00008007	chr11	-	7897	31	FSM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_30	12.8998277335612	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATTTTTTTAAGTCT	5075	False	NA	NA	False	AATAAA	-24	NA	8574887	8381651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8574416
ES_00008008	chr11	-	7483	32	NNC	ENSMUSG00000020422.15	novel	7629	31	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_1	14.7032385454799	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATTTTTTTAAGTCT	9616	False	NA	NA	False	AATAAA	-24	NA	8614580	8381651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8382706_8382750_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8614478
ES_00008009	chr11	-	7600	31	FSM	ENSMUSG00000020422.15	ENSMUST00000239111.2	7629	31	24	5	24	-5	multi-exon	FALSE	canonical	3	26	junction_30	11.9341247409826	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAATGAAGCATTTTTTTA	9981	False	NA	NA	False	AATAAA	-19	NA	8614657	8381656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8614478
ES_00008010	chr11	-	1187	1	FSM	ENSMUSG00000082095.2	ENSMUST00000119652.2	1074	1	-58	-55	-58	55	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTACTTTCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	8835354	8834167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_8834200_8835400
ES_00008011	chr11	-	5044	7	NNC	ENSMUSG00000020413.12	novel	4640	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	72	junction_5	48.4389650316079	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	92	True	AATAAA	-21	NA	8961164	8943136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957602_8960240_8960418_8960496
ES_00008012	chr11	-	4640	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	92	True	AATAAA	-21	NA	8961191	8943136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
ES_00008013	chr11	-	4610	8	NNC	ENSMUSG00000020413.12	novel	4640	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	72	junction_5	46.4880937137979	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	92	True	AATAAA	-21	NA	8961164	8943136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957602_8960240_8960418_8960496_8960625_8961058
ES_00008014	chr11	-	2792	7	FSM	ENSMUSG00000020413.12	ENSMUST00000152890.8	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.7079419869195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAATAAATCAAAATC	NA	False	NA	NA	False	ATTAAA	-44	NA	8961128	8945355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496
ES_00008017	chr11	-	612	1	FSM	ENSMUSG00000081629.2	ENSMUST00000117907.2	470	1	13	-155	13	155	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAGTTTAAAGACTAGAG	NA	False	NA	NA	False	AATAAA	-30	NA	9687608	9686996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_9687000_9687600
ES_00008020	chr11	-	2974	3	FSM	ENSMUSG00000035455.13	ENSMUST00000171938.2	2974	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	284.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_11753064_11756095_11756216_11758884
ES_00008021	chr11	-	2844	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_11753064_11758894
ES_00008022	chr11	-	963	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	262	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	40.5362492098122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772659	11764100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772532
ES_00008023	chr11	-	976	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	42.6438741204408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772918	11764100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772778
ES_00008024	chr11	-	983	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	-17	-2	-17	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772938	11764100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
ES_00008025	chr11	-	2104	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1841	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_14	27.1151174040743	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	3797	False	NA	-1	True	AATAAA	-21	NA	11832470	11764100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
ES_00008026	chr11	-	5071	17	FSM	ENSMUSG00000020176.18	ENSMUST00000093321.12	5061	17	0	-10	0	10	multi-exon	TRUE	canonical	3	35	junction_14	7.38135319572231	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGTGTTTTTTTTTTAAT	NA	False	NA	NA	False	AATAAA	-26	NA	11987401	11880497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502_11901660_11904743_11904909_11917531_11917686_11920422_11920643_11937595_11937675_11987191
ES_00008027	chr11	-	5271	13	FSM	ENSMUSG00000020173.18	ENSMUST00000109650.8	5271	13	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_8	114.138895649117	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414859	12186675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ES_00008029	chr11	-	5543	14	FSM	ENSMUSG00000020173.18	ENSMUST00000109651.9	5541	14	0	-2	0	0	multi-exon	FALSE	canonical	3	119	junction_9	120.525034842014	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414960	12186675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ES_00008030	chr11	-	4488	12	FSM	ENSMUSG00000020173.18	ENSMUST00000172956.8	4488	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	160.352504251835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACATTCTGTGGCTTACA	NA	False	NA	NA	False	NA	NA	NA	12414800	12187110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ES_00008031	chr11	-	1711	4	FSM	ENSMUSG00000078974.11	ENSMUST00000178855.8	779	4	352	-1284	0	176	multi-exon	FALSE	canonical	3	96	junction_3	2890.84082347449	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAATATATTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	16458132	16450353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458078
ES_00008032	chr11	-	1862	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109643.8	1862	4	0	0	0	0	multi-exon	FALSE	canonical	3	4864	junction_3	651.205207459386	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTGAAGATGCAGCAAAT	NA	False	NA	NA	False	AATGAA	-13	NA	16458484	16450529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458103
ES_00008033	chr11	-	691	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109642.8	691	4	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_3	2857.39815605425	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTCAGGGCTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	16458166	16451386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458099
ES_00008036	chr11	-	1540	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_16886565_16900881_16900931_16901019
ES_00008038	chr11	-	1581	4	FSM	ENSMUSG00000087060.8	ENSMUST00000123734.8	787	4	-57	-737	0	569	multi-exon	FALSE	canonical	3	11	junction_1	8.25967446224258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTACATTGTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	16901099	16884584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901019
ES_00008041	chr11	-	4326	6	FSM	ENSMUSG00000016984.8	ENSMUST00000076661.7	4185	6	-141	0	-141	0	multi-exon	FALSE	canonical	3	153	junction_2	14.7322774885623	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGAGTGAAGAGACTAG	NA	False	NA	NA	False	AATAAA	-18	NA	17904016	17888755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_17890351_17895606_17897568_17897774_17897888_17902251_17902329_17902577_17902704_17903562
ES_00008043	chr11	-	210	2	Antisense	novelGene_ENSMUSG00000045671.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	165	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19950098	19918256	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_19918416_19950047
ES_00008044	chr11	-	3631	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	0	0	0	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1336	False	NA	-4	True	AATAAA	-19	NA	20062913	20012303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ES_00008046	chr11	-	481	3	Intergenic	novelGene_481	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	15	junction_2	26	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCACAACATGTTGTTTT	276	False	NA	NA	False	AATAAA	-16	NA	20089366	20087217	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_20087398_20088488_20088566_20089142
ES_00008048	chr11	-	219	2	Intergenic	novelGene_482	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACCAGGGTAATAGGAAAA	4844	False	NA	NA	False	NA	NA	NA	20148931	20145473	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_20145500_20148738
ES_00008049	chr11	-	4804	7	FSM	ENSMUSG00000044066.15	ENSMUST00000050611.14	4804	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	29.8756682863422	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGGTGTTGTATCATTT	3055	False	NA	NA	False	ATTAAA	-23	NA	20199418	20177036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195_20190699_20191885_20192239_20199306
ES_00008050	chr11	-	2750	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	35	-614	0	614	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGGTATTTTGAATTG	3090	False	NA	NA	False	NA	NA	NA	20199383	20187771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
ES_00008051	chr11	-	2789	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	0	-1	0	0	multi-exon	FALSE	canonical	3	111	junction_1	11	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3044	False	NA	-8	True	AATAAA	-17	NA	20199429	20188385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20190699_20191885_20192239_20199306
ES_00008055	chr11	-	4002	9	FSM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	0	-4	0	4	multi-exon	FALSE	canonical	3	125	junction_7	17.066048165876	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTCTTTGTATCTA	9260	False	NA	NA	False	AATAAA	-20	NA	20691589	20635079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
ES_00008056	chr11	-	556	2	FSM	ENSMUSG00000049659.16	ENSMUST00000134841.2	556	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGCTGTAATTTAGAAA	NA	False	NA	NA	False	AATACA	-39	NA	20642802	20635980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20636199_20642464
ES_00008057	chr11	-	3545	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	34	-217	0	217	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATATCTGCATGCCCTG	NA	False	NA	NA	False	AATAAA	-9	NA	20781022	20773358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ES_00008058	chr11	-	913	4	FSM	ENSMUSG00000042363.15	ENSMUST00000144441.8	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	21.6384431561566	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGATCGATCAGGTGCC	NA	False	NA	NA	False	TTTAAA	-15	NA	20780755	20776349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275
ES_00008060	chr11	-	2044	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	61.1714853284106	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21321201	21271672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ES_00008062	chr11	-	2122	9	FSM	ENSMUSG00000020321.17	ENSMUST00000102874.11	2122	9	0	0	0	0	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGGCTGTAATTTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	21522193	21506786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ES_00008064	chr11	-	4974	25	FSM	ENSMUSG00000042302.15	ENSMUST00000180360.8	4971	25	0	-3	0	3	multi-exon	FALSE	canonical	3	6	junction_18	10.1867970105099	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCTGCAATTTATTTCC	9892	False	NA	0	True	AATAAA	-24	NA	22236795	21955824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006529_22006628_22006782_22006922_22009136_22009262_22012779_22012888_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096626_22101066_22101190_22101787_22101893_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22236681
ES_00008066	chr11	-	723	2	Intergenic	novelGene_486	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_1	0	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTCTTGGTTCCATTTC	NA	False	NA	NA	False	NA	NA	NA	22560664	22550330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_22550607_22560217
ES_00008067	chr11	-	492	2	Antisense	novelGene_ENSMUSG00000086256.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGTTCGCTGACATT	NA	False	NA	NA	False	NA	NA	NA	22571046	22550370	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_22550607_22570790
ES_00008068	chr11	-	228	3	Intergenic	novelGene_487	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTGCTTTTTTAACTG	NA	False	NA	NA	False	NA	NA	NA	22616518	22614441	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_22614635_22614915_22614930_22616497
ES_00008069	chr11	-	3070	2	FSM	ENSMUSG00000051650.12	ENSMUST00000062844.11	3057	2	0	-13	0	13	multi-exon	FALSE	canonical	3	288	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATACTCTTTCTGTTCTT	3969	False	NA	-15	True	AATAAA	-34	NA	22810101	22784733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_22787196_22809493
ES_00008070	chr11	-	4530	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	0	-22	0	22	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTCGATACTCATG	NA	False	NA	NA	False	NA	NA	NA	22932382	22846113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_22850058_22906410_22906693_22932078
ES_00008071	chr11	-	808	2	FSM	ENSMUSG00000051355.19	ENSMUST00000161944.2	760	2	-48	0	-48	0	multi-exon	FALSE	canonical	3	2089	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCACTGGTGTTACCAAAA	NA	False	NA	-107	True	NA	NA	NA	22906995	22849834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_22850058_22906410
ES_00008075	chr11	-	2992	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	31	0	31	0	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCACTGAAATCCTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	23447999	23438546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ES_00008077	chr11	-	4392	20	FSM	ENSMUSG00000042208.16	ENSMUST00000043356.13	4392	20	0	0	0	0	multi-exon	TRUE	canonical	3	83	junction_12	10.4085517791143	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCTCCAAACTTGGCA	NA	False	NA	NA	False	AATAAA	-13	NA	23579027	23523250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_23525518_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872
ES_00008078	chr11	-	4128	22	FSM	ENSMUSG00000042208.16	ENSMUST00000180260.8	4128	22	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_12	9.91208520476776	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAATTGTGGAGAAAGT	NA	False	NA	-15	True	AATAAA	-9	NA	23583631	23523787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_23525518_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
ES_00008081	chr11	-	6211	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	17	-2481	0	2481	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACGTTCTTTGATAAATA	1286	False	NA	NA	False	NA	NA	NA	23845236	23810164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
ES_00008082	chr11	-	1640	12	FSM	ENSMUSG00000064090.15	ENSMUST00000109504.8	1642	12	2	0	2	0	multi-exon	FALSE	canonical	3	91	junction_9	9.82407230705347	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGAGAAAGAGAGAGAA	NA	False	NA	75	True	NA	NA	NA	26541727	26421321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586
ES_00008083	chr11	-	1889	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543920	26421403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
ES_00008084	chr11	-	1847	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-32	-281	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	30.8175635348128	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCCTATCTGGACTG	NA	False	NA	NA	False	NA	NA	NA	26543955	26421684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
ES_00008085	chr11	-	973	1	FSM	ENSMUSG00000032889.8	ENSMUST00000042595.8	687	1	-55	-231	-55	231	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGTCTCTCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	28289869	28288896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_28288900_28289900
ES_00008091	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	0	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465033	29462875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29463677_29464916
ES_00008092	chr11	-	662	2	FSM	ENSMUSG00000020460.16	ENSMUST00000147782.2	565	2	0	-97	0	97	multi-exon	FALSE	canonical	3	16484	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGCATGGCATGATGGCA	NA	False	NA	-12	True	TATAAA	-10	NA	29496671	29495748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29496030_29496290
ES_00008093	chr11	-	734	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	-97	0	97	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGCATGGCATGATGGCA	NA	False	NA	-12	True	TATAAA	-10	NA	29497860	29495748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
ES_00008095	chr11	-	928	5	FSM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	7569	junction_4	3562.36217277244	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAGAAGACAAGTAGT	NA	False	NA	-84	True	NA	NA	NA	29497882	29495898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680_29497746_29497840
ES_00008097	chr11	-	702	1	FSM	ENSMUSG00000085893.2	ENSMUST00000146791.2	830	1	119	9	119	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATAAGGATTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	29552494	29551792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29551800_29552500
ES_00008099	chr11	-	8608	36	NNC	ENSMUSG00000020315.19	novel	8461	36	NA	NA	0	19558	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.31078657224	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGCAAAACTATACAATGG	1820	False	NA	NA	False	NA	NA	NA	30148257	30029836	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_30029866_30049394_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
ES_00008102	chr11	-	9116	31	FSM	ENSMUSG00000020315.19	ENSMUST00000102838.10	9107	31	0	-9	0	9	multi-exon	FALSE	canonical	3	341	junction_28	71.9392953970375	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTTTTCTCTTTCCTTCT	1820	False	NA	NA	False	CATAAA	-27	NA	30148257	30056775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
ES_00008105	chr11	-	842	4	FSM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	21	0	21	0	multi-exon	FALSE	canonical	3	29	junction_1	6.84754619472471	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599566	30455990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_30456440_30582207_30582318_30583685_30583703_30599300
ES_00008107	chr11	-	2532	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	0	0	0	0	multi-exon	TRUE	canonical	2	57	junction_8	15.3746121325012	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTCATGCTTTTGTTC	NA	False	NA	NA	False	AATAAA	-12	NA	30904152	30880773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
ES_00008108	chr11	-	1265	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	0	-247	0	2	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAAGTGTCATTTCTGA	NA	False	NA	NA	False	AATAAA	-35	NA	30936334	30926704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_30927747_30936111
ES_00008110	chr11	-	4055	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	-82	-33	-82	33	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTTGATGTAAGGTGTA	NA	False	NA	NA	False	AATAAA	-45	NA	31320156	31307273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
ES_00008111	chr11	-	2485	3	FSM	ENSMUSG00000044502.17	ENSMUST00000109415.2	799	3	-226	-1460	-68	154	multi-exon	FALSE	canonical	3	591	junction_1	17	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGGGCGGGGCGGCTGG	NA	False	NA	NA	False	NA	NA	NA	31621953	31615026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_31616934_31619243_31619369_31621500
ES_00008112	chr11	-	1394	4	FSM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_1	23.4141457717813	3919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	False	NA	-29	True	AATAAA	-22	NA	31621885	31615180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_31615868_31616736_31616934_31619243_31619369_31621500
ES_00008113	chr11	-	2177	3	Intergenic	novelGene_508	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	12	junction_2	7	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTATTGCATACC	NA	False	NA	NA	False	NA	NA	NA	31937010	31930700	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_31932543_31934463_31934750_31936961
ES_00008118	chr11	-	2809	18	FSM	ENSMUSG00000020282.19	ENSMUST00000146179.8	2805	18	0	-4	0	2	multi-exon	TRUE	canonical	0	0	junction_2	24.219012234879	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTCACTGTTTCCT	NA	False	NA	0	True	AATAAA	-37	NA	32172280	32159582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181_32164305_32164392_32164484_32164909_32165124_32165933_32166065_32166141_32166283_32172168
ES_00008121	chr11	-	1871	13	FSM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	45	949	-4	23	multi-exon	TRUE	canonical	3	148	junction_6	11.6770786871831	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGCCGCAGAGTTCCT	4612	False	NA	NA	False	NA	NA	NA	32217662	32182911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
ES_00008125	chr11	-	823	2	FSM	ENSMUSG00000057113.14	ENSMUST00000141881.2	822	2	0	-1	0	0	multi-exon	FALSE	canonical	3	19753	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33104465	33102509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33102853_33103985
ES_00008126	chr11	-	1192	10	FSM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	6125.12875954356	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ES_00008127	chr11	-	1157	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	1651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ES_00008128	chr11	-	966	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCTGGTGTCACTGA	NA	False	NA	-7	True	ATTAAA	-11	NA	33113076	33105327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ES_00008131	chr11	-	5137	22	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	29035	-17	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	47.2060663306391	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTCACAAGAAAAGAACGC	NA	False	NA	NA	False	ATTAAA	-2	NA	33434059	33161811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005
ES_00008132	chr11	-	5001	28	FSM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_14	30.62978637606	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGGGCTCCCTTCTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	33463746	33161794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ES_00008134	chr11	-	3370	21	FSM	ENSMUSG00000040594.20	ENSMUST00000129179.8	3364	21	0	-6	0	6	multi-exon	FALSE	canonical	1	9	junction_6	57.1444660487785	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTGTTTTATGGCTTTC	NA	False	NA	NA	False	AATAAA	-34	NA	33463642	33246387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33354037_33354200_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ES_00008136	chr11	-	2237	13	NNC	ENSMUSG00000040594.20	novel	3950	12	NA	NA	5	2796	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	56.7731230425102	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTATATTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	33463741	33419619	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33420267_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ES_00008137	chr11	-	2133	12	NNC	ENSMUSG00000040594.20	novel	3950	12	NA	NA	15	2793	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	70.6789973129007	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGATTGTATATTGCT	NA	False	NA	NA	False	NA	NA	NA	33463731	33419622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33420267_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33454681_33454829_33463601
ES_00008139	chr11	-	1473	2	Intergenic	novelGene_517	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGATTGCATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	33487247	33482093	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_33483454_33487134
ES_00008140	chr11	-	1454	5	Intergenic	novelGene_518	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	6.87386354243376	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATCGTGGTAGTCATCT	NA	False	NA	-1	True	AATAAA	-26	NA	33494408	33487359	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_33487917_33490994_33491103_33491232_33491316_33492017_33492568_33494252
ES_00008141	chr11	-	2505	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724468	34700016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
ES_00008143	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	-1	True	AGTAAA	-17	NA	35725333	35699207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ES_00008144	chr11	-	4535	23	FSM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	0	-4	0	4	multi-exon	FALSE	canonical	3	205	junction_16	29.6517319327484	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCATTTGTCCCTTTC	8117	False	NA	NA	False	AATAAA	-22	NA	35871354	35729222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440_35766980_35767355_35767446_35774074_35774318_35778889_35778964_35780086_35780234_35782275_35782406_35788202_35788283_35789445_35789523_35801002_35801207_35806002_35806113_35870797
ES_00008145	chr11	-	951	1	FSM	ENSMUSG00000082087.5	ENSMUST00000122180.2	951	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2663	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGGCGAGCGGATCCC	5856	False	NA	NA	False	NA	NA	NA	40564683	40563732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_40563700_40564700
ES_00008146	chr11	-	1866	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	93	-10	-53	10	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTGTATTTGCTTCCT	NA	False	NA	-2	True	AATAAA	-28	NA	40583508	40570130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ES_00008149	chr11	-	2687	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	3	-1221	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	161.211267175591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAAGGGTTTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	40624215	40593442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40599039_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ES_00008150	chr11	-	1443	7	FSM	ENSMUSG00000020330.17	ENSMUST00000156399.8	1443	7	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	43.8203402796261	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTTTTCCATAACT	NA	False	NA	NA	False	NA	NA	NA	40624243	40611729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ES_00008151	chr11	-	608	4	FSM	ENSMUSG00000020330.17	ENSMUST00000152749.2	547	4	0	-61	0	61	multi-exon	FALSE	canonical	3	655	junction_2	38.0292285252044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTTCCATGA	NA	False	NA	NA	False	NA	NA	NA	40624218	40615396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_40615748_40619253_40619334_40619948_40620048_40624140
ES_00008152	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646138	40639378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ES_00008153	chr11	-	497	3	FSM	ENSMUSG00000020415.17	ENSMUST00000140434.8	476	3	0	-21	0	6	multi-exon	FALSE	canonical	3	326	junction_1	5041.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTGGTATTTTTTG	NA	False	NA	-6	True	AATAAA	-40	NA	43313813	43311070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_43311236_43311854_43312093_43313719
ES_00008154	chr11	-	1694	4	FSM	ENSMUSG00000020415.17	ENSMUST00000117446.8	1674	4	0	-20	0	6	multi-exon	FALSE	canonical	3	9157	junction_2	511.130337802622	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTGGTATTTTTTG	NA	False	NA	-6	True	AATAAA	-40	NA	43316808	43311070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_43312093_43313719_43313814_43315545_43315725_43316409
ES_00008155	chr11	-	725	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	-25	0	6	multi-exon	FALSE	canonical	3	4089	junction_5	2240.31940579909	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTGGTATTTTTTG	NA	False	NA	-6	True	AATAAA	-40	NA	43317029	43311070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
ES_00008157	chr11	-	972	5	FSM	ENSMUSG00000020415.17	ENSMUST00000121638.8	948	5	0	-24	0	0	multi-exon	FALSE	canonical	3	8449	junction_1	727.283129186976	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACCCCTGATTGGTAT	NA	False	NA	-12	True	AATAAA	-34	NA	43316790	43311076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409
ES_00008158	chr11	-	721	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	4	-29	0	6	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTGGTATTTTTTG	NA	False	NA	-6	True	AATAAA	-40	NA	43317040	43311070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
ES_00008162	chr11	-	2092	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	-4	0	4	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTTTTATAATGTCT	NA	False	NA	NA	False	AATAAA	-22	NA	44361325	44345393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ES_00008164	chr11	-	205	1	Intergenic	novelGene_526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTGGCAGTGAGCAT	7815	False	NA	NA	False	AAGAAA	-1	NA	44488487	44488282	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_44488300_44488500
ES_00008165	chr11	-	206	1	Intergenic	novelGene_528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCTTGGAACATACAAGC	5759	False	NA	NA	False	NA	NA	NA	44490543	44490337	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_44490300_44490500
ES_00008167	chr11	-	6461	4	FSM	ENSMUSG00000044847.14	ENSMUST00000129820.8	6453	4	0	-8	0	8	multi-exon	FALSE	canonical	3	99	junction_3	23.3666428910958	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGGTCTCTGCTAACT	NA	False	NA	3	True	AATAAA	-23	NA	45835762	45819087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_45824851_45825247_45825332_45828185_45828326_45835288
ES_00008168	chr11	-	2250	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	12.8	3024	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTCCTACAGAATGAGT	6301	False	NA	NA	False	AATAAA	-26	NA	45846321	45837669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
ES_00008169	chr11	-	967	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	-10	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGACAGAGAGAGAGAGA	1787	False	NA	NA	False	AATAAA	-29	NA	45943148	45942181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_45942200_45943100
ES_00008171	chr11	-	6339	31	FSM	ENSMUSG00000020340.17	ENSMUST00000093166.11	6298	31	-41	0	23	0	multi-exon	FALSE	canonical	3	40	junction_25	27.300895386212	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCATCTTCGTCCTGACT	NA	False	NA	0	True	ATTAAA	-22	NA	46203162	46084681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144773_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605_46167735_46168885_46168983_46170778_46170961_46174983_46175086_46176893_46176972_46180458_46180549_46182339_46182480_46203053
ES_00008174	chr11	-	517	1	FSM	ENSMUSG00000081952.2	ENSMUST00000120545.2	330	1	5	-192	5	192	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAATCTTTTTCATTATG	NA	False	NA	NA	False	NA	NA	NA	48181135	48180618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_48180600_48181100
ES_00008176	chr11	-	3434	6	FSM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	0	-2	0	2	multi-exon	FALSE	canonical	3	31	junction_5	5.01996015920445	6565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGGACTCTTTTAAA	NA	False	NA	-23	True	AATAAA	-20	NA	48708180	48697228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126_48703223_48706669
ES_00008179	chr11	-	5746	12	FSM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	0	-10	0	10	multi-exon	FALSE	canonical	3	61	junction_7	45.9026998251701	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGTTTGTACAGCTCTA	NA	False	NA	0	True	AATAAA	-29	NA	49603550	49562319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576074_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
ES_00008180	chr11	-	5446	10	FSM	ENSMUSG00000020362.14	ENSMUST00000109183.3	2241	10	0	-3205	0	10	multi-exon	TRUE	canonical	3	196	junction_9	12.7714960404453	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGTTTGTACAGCTCTA	NA	False	NA	0	True	AATAAA	-29	NA	49593459	49562319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49576180_49577673_49577760_49579991_49580179_49593367
ES_00008181	chr11	-	2513	12	FSM	ENSMUSG00000020362.14	ENSMUST00000020624.7	2498	12	0	-15	0	0	multi-exon	FALSE	canonical	3	150	junction_7	24.0849049121664	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAATTGAAAACAGTTGT	NA	False	NA	NA	False	ACTAAA	-13	NA	49603537	49565524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576089_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
ES_00008183	chr11	-	513	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	-84	-81	-84	81	mono-exon	FALSE	NA	NA	NA	NA	NA	1026	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAAATTAAGACCTT	NA	False	NA	NA	False	NA	NA	NA	49569968	49569455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_49569500_49570000
ES_00008184	chr11	-	2027	9	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	0	650	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	325.316672643749	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGGGACTATATCTACC	NA	False	NA	NA	False	NA	NA	NA	50101618	50089542	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50089572_50090981_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ES_00008185	chr11	-	2673	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_1	128.516496201532	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATTGAGTGAGCCATCT	NA	False	NA	NA	False	TATAAA	-11	NA	50101618	50090192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ES_00008186	chr11	-	2037	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101654	50090978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ES_00008187	chr11	-	582	3	FSM	ENSMUSG00000015837.16	ENSMUST00000131214.2	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_2	44.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTGGGATTTTTTTTTT	NA	False	NA	NA	False	AAAAAG	-8	NA	50096927	50093138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50093422_50093640_50093862_50096849
ES_00008188	chr11	-	3805	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	0	43749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1071.55122447164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGAAGGAAGGAAGGAAA	8136	False	NA	NA	False	NA	NA	NA	50216500	50141038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50141067_50185295_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ES_00008189	chr11	-	3807	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	0	43749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1071.55122447164	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGAAGGAAGGAAGGAAA	8136	False	NA	NA	False	NA	NA	NA	50216500	50141038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50141065_50185291_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ES_00008191	chr11	-	4287	15	FSM	ENSMUSG00000020368.16	ENSMUST00000179865.8	4281	15	0	-6	0	6	multi-exon	FALSE	canonical	3	497	junction_14	977.081357713797	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATGTTTTTACTGTTTG	8136	False	NA	3	True	ATTAAA	-29	NA	50216500	50184781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216319
ES_00008192	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8136	False	NA	-54	True	AATAAA	-22	NA	50216500	50185293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ES_00008198	chr11	-	5512	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	-54	-133	-20	133	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTCTCTCACATTGAAT	276	False	NA	NA	False	NA	NA	NA	50718571	50701779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
ES_00008199	chr11	-	2399	5	FSM	ENSMUSG00000044296.11	ENSMUST00000049625.2	2408	5	13	-4	7	0	multi-exon	FALSE	canonical	0	0	junction_2	1.08972473588517	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGCTTGTTTATTTATT	NA	False	NA	NA	False	ACTAAA	-25	NA	50732366	50722857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50724799_50728736_50728833_50729236_50729364_50731352_50731418_50732196
ES_00008202	chr11	-	3151	7	NIC	ENSMUSG00000049321.18	novel	2782	7	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	29.9411459737636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGGTATTT	NA	False	NA	1	True	NA	NA	NA	50806969	50789537	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_50792119_50796432_50796514_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ES_00008203	chr11	-	3082	6	NNC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	19.4668949758301	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGGTATTT	NA	False	NA	1	True	NA	NA	NA	50806985	50789537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ES_00008204	chr11	-	539	5	FSM	ENSMUSG00000049321.18	ENSMUST00000151027.2	539	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.0172362570938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50806961	50796816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50796985_50801262_50801356_50801576_50801704_50803106_50803232_50806935
ES_00008206	chr11	-	2370	7	FSM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	0	0	0	0	multi-exon	FALSE	canonical	3	2171	junction_1	392.745889008826	1054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTCTTGACCTTGAGT	NA	False	NA	-11	True	AATAAA	-16	NA	51497674	51490926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ES_00008207	chr11	-	1437	8	FSM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_2	581.731405866512	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTGTTCTAGATCAGG	NA	False	NA	92	True	GGGGCT	-16	NA	51497674	51492000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ES_00008208	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526723	51514499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ES_00008210	chr11	-	2869	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	-508	6	-508	-6	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTGAAAATGGAGGAATG	NA	False	NA	-6	True	AATATA	-26	NA	51542177	51533895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
ES_00008212	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51576920_51579374
ES_00008213	chr11	-	6395	23	FSM	ENSMUSG00000036391.17	ENSMUST00000038210.12	3800	23	-227	-2368	0	-3	multi-exon	FALSE	canonical	3	22	junction_16	14.7653827896746	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAAAATGTTAGTTAT	3773	False	NA	-22	True	AATAAA	-15	NA	51647265	51583093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620403_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ES_00008214	chr11	-	6581	23	FSM	ENSMUSG00000036391.17	ENSMUST00000109097.9	6581	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_21	10.4921261307612	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAATGTTAGTTATTGA	3593	False	NA	-19	True	AATAAA	-18	NA	51647445	51583090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ES_00008215	chr11	-	2105	11	FSM	ENSMUSG00000036391.17	ENSMUST00000064297.5	2104	11	0	-1	0	1	multi-exon	FALSE	canonical	3	47	junction_9	12.9015502944414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTGTTTTTTTCAGA	3773	False	NA	NA	False	AATAAA	-15	NA	51647265	51612515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ES_00008216	chr11	-	6103	13	FSM	ENSMUSG00000020387.16	ENSMUST00000109091.2	6099	13	0	-4	0	-1	multi-exon	FALSE	canonical	0	0	junction_11	6.12145589073565	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGCCATGACGTTCTG	8605	False	NA	-12	True	AATAAA	-16	NA	51748223	51704282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51745706_51745795_51748137
ES_00008217	chr11	-	6286	12	FSM	ENSMUSG00000020387.16	ENSMUST00000020655.14	6273	12	0	-13	0	13	multi-exon	FALSE	canonical	2	9	junction_11	3.21926021993196	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTGTGTTAGGTGGC	8348	False	NA	2	True	AATAAA	-30	NA	51748480	51704268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51748137
ES_00008218	chr11	-	5359	2	ISM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	8140	-312	8135	312	intron_retention	FALSE	canonical	3	792	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTACATAATTAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	51883171	51876011	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_51877638_51879438
ES_00008219	chr11	-	2136	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	-32	-312	-32	312	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTACATAATTAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	51891343	51876011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ES_00008220	chr11	-	585	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCTTCATCGTTGTTG	NA	False	NA	NA	False	AATAGA	-12	NA	51891589	51877493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
ES_00008222	chr11	-	3030	10	NIC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-68	131	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	63.2314970740233	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTCTTGCAGAGAACC	NA	False	NA	42	True	NA	NA	NA	52174226	52143066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_52144790_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ES_00008223	chr11	-	3146	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-68	131	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	97.915269493578	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTCTTGCAGAGAACC	NA	False	NA	42	True	NA	NA	NA	52174226	52143066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_52144813_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ES_00008224	chr11	-	2940	10	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	2	88	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	70.8071629214704	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGAGTAGCTGTTTGAG	NA	False	NA	-1	True	AATAAA	-29	NA	52174156	52143109	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_52144813_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ES_00008225	chr11	-	3176	12	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-91	88	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_7	83.2218979447156	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGAGTAGCTGTTTGAG	NA	False	NA	-1	True	AATAAA	-29	NA	52174249	52143109	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ES_00008226	chr11	-	3083	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-91	88	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_1	46.9302674187991	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGAGTAGCTGTTTGAG	NA	False	NA	-1	True	AATAAA	-29	NA	52174249	52143109	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ES_00008227	chr11	-	3096	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-81	88	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	63.363712012476	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGAGTAGCTGTTTGAG	NA	False	NA	-1	True	AATAAA	-29	NA	52174239	52143109	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_52144813_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ES_00008229	chr11	-	593	2	Intergenic	novelGene_540	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTCTTAATAATGAAAT	9400	False	NA	NA	False	AGTAAA	-20	NA	52249493	52248753	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_52249171_52249317
ES_00008230	chr11	-	3457	1	FSM	ENSMUSG00000081297.2	ENSMUST00000120089.2	596	1	-1668	-1193	-1668	1193	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCTTGTTGTAGTTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	52371598	52368141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_52368100_52371600
ES_00008231	chr11	-	4618	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	0	0	0	0	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTTAATTTTCTTA	NA	False	NA	-1	True	AATAAA	-22	NA	53191284	53150640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
ES_00008233	chr11	-	3075	16	FSM	ENSMUSG00000020361.14	ENSMUST00000151854.2	3075	16	0	0	0	0	multi-exon	FALSE	canonical	3	1487	junction_10	212.016183868643	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	53191238	53155073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
ES_00008234	chr11	-	212	1	Intergenic	novelGene_545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCATTTATTCTCGTGG	NA	False	NA	NA	False	NA	NA	NA	53201431	53201219	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_53201200_53201400
ES_00008238	chr11	-	1521	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	0	0	0	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTAATTTTGCTAGTGT	2947	False	NA	NA	False	NA	NA	NA	53321654	53318748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53319978_53321362
ES_00008239	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53319978_53321362_53321530_53321614
ES_00008240	chr11	-	375	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2943	False	NA	-8	True	AATAAA	-17	NA	53321658	53319779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53319978_53321481
ES_00008242	chr11	-	5146	26	NNC	ENSMUSG00000020380.17	novel	5153	25	NA	NA	0	11363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.8086309663357	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAAAAAATTTAAGAACC	NA	False	NA	NA	False	NA	NA	NA	53598122	53528982	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_53529008_53540353_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
ES_00008243	chr11	-	5573	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	24	-444	0	444	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTCTGATCCCCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	53598122	53539901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
ES_00008248	chr11	-	3159	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	-99	2	-99	-2	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGAATACAATCTT	NA	False	NA	NA	False	AATAAA	-21	NA	53782585	53755369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
ES_00008252	chr11	-	3058	7	NNC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	0	76015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.297531641572	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAAGAGTGCCTTTCCC	NA	False	NA	NA	False	NA	NA	NA	54678467	54532266	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_54532292_54608283_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ES_00008253	chr11	-	3069	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678501	54608281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ES_00008254	chr11	-	819	3	FSM	ENSMUSG00000052298.13	ENSMUST00000136059.8	801	3	0	-18	0	18	multi-exon	FALSE	canonical	3	549	junction_1	84	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCAAAACAAAGGATAGT	NA	False	NA	NA	False	NA	NA	NA	54678467	54630793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54631377_54647231_54647386_54678385
ES_00008255	chr11	-	401	3	FSM	ENSMUSG00000052298.13	ENSMUST00000123424.2	401	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	269	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCAGACATCCCTTTCAA	NA	False	NA	NA	False	AAGAAA	-1	NA	54651165	54631288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54631377_54647231_54647386_54651006
ES_00008256	chr11	-	240	1	FSM	ENSMUSG00000082503.2	ENSMUST00000120487.2	468	1	230	-2	230	2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATCCATAGTCAGAAAAG	NA	False	NA	NA	False	AAAAAG	-15	NA	54637420	54637180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54637200_54637400
ES_00008257	chr11	-	3289	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	141	1	141	-1	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGGAGACATTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	54751597	54729185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
ES_00008259	chr11	-	2755	19	NNC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	0	10422	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.2752305203715	469	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	3617	False	NA	NA	False	NA	NA	NA	54846913	54791188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_54791221_54801612_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ES_00008260	chr11	-	2623	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	64.3996312101242	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3619	False	NA	-5	True	CATAAA	-18	NA	54846911	54801612	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
ES_00008261	chr11	-	2835	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	0	-1	0	1	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGGCTAATTCTT	3582	False	NA	-2	True	CATAAA	-21	NA	54846948	54801609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ES_00008262	chr11	-	2810	18	FSM	ENSMUSG00000020400.18	ENSMUST00000018482.13	2810	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_17	76.4117873477302	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6845	False	NA	-5	True	CATAAA	-18	NA	54853738	54801612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
ES_00008264	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ES_00008267	chr11	-	2124	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	-9	0	9	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTGATGGTATGTGTGT	3858	False	NA	7	True	AATAAA	-31	NA	55310724	55285316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
ES_00008268	chr11	-	2295	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	14	-9	14	9	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTGATGGTATGTGTGT	3690	False	NA	7	True	AATAAA	-31	NA	55310892	55285316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
ES_00008269	chr11	-	2492	13	NNC	ENSMUSG00000018593.14	novel	1304	12	NA	NA	16	5	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_12	285.938549633775	307	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCGGGTGATGGTATGT	589	False	NA	3	True	AATAAA	-27	NA	55313993	55285320	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904_55311027_55312068_55312192_55313826
ES_00008270	chr11	-	541	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	False	NA	-7	True	AATAAA	-20	NA	55352065	55337466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
ES_00008272	chr11	-	2576	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	0	-19	0	19	multi-exon	FALSE	canonical	3	63	junction_13	118.75144346678	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGGTAAATACCTAAATAT	NA	False	NA	NA	False	AATAAA	-40	NA	57409443	57373799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
ES_00008273	chr11	-	2454	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	1	5	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_12	132.513346430646	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATTTAATAGCGTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	57409442	57373813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405118_57409398
ES_00008275	chr11	-	3010	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_13	127.824121030265	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGCGTGGTATTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	57409428	57373821	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57408930
ES_00008277	chr11	-	1933	2	Intergenic	novelGene_559	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTTTCTTGTGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	57447564	57433740	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_57433775_57445665
ES_00008278	chr11	-	1157	3	Intergenic	novelGene_558	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	40.5	680	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCTTGTGGGTGATTTT	NA	False	NA	NA	False	NA	NA	NA	57448841	57433737	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_57434133_57446023_57446486_57448541
ES_00008279	chr11	-	1154	3	Intergenic	novelGene_560	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	40.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTTTCTTGTGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	57448841	57433740	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_57433775_57445665_57446486_57448541
ES_00008281	chr11	-	808	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	-54	-252	-35	145	multi-exon	FALSE	canonical	3	13	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGAGGATGGCTGGATG	NA	False	NA	NA	False	NA	NA	NA	57692278	57686179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_57686621_57686851_57687000_57692059
ES_00008283	chr11	-	657	1	FSM	ENSMUSG00000083657.2	ENSMUST00000117266.2	357	1	-61	-239	-61	239	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGACTGCTTTTCCGAAG	NA	False	NA	NA	False	AATAAA	-29	NA	57839972	57839315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_57839300_57840000
ES_00008284	chr11	-	525	1	FSM	ENSMUSG00000081223.2	ENSMUST00000117585.2	670	1	135	10	135	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGGTAGAGTGGCGGGC	NA	False	NA	NA	False	NA	NA	NA	57988464	57987939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_57987900_57988500
ES_00008286	chr11	-	4919	28	FSM	ENSMUSG00000037275.15	ENSMUST00000102711.9	4919	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	45.8600782424762	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ES_00008287	chr11	-	4922	28	FSM	ENSMUSG00000037275.15	ENSMUST00000035604.13	4922	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	43.3607067704434	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ES_00008288	chr11	-	4835	28	NNC	ENSMUSG00000037275.15	novel	4922	28	NA	NA	76	-8	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_24	58.4179867823106	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATCAGAAATGTCTCG	NA	False	NA	-42	True	TATAAA	-4	NA	58059289	58012123	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054737_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ES_00008289	chr11	-	6201	28	NIC	ENSMUSG00000037275.15	novel	6213	28	NA	NA	5	-4	combination_of_known_junctions	TRUE	canonical	3	119	junction_10	38.087942423091	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGTGCTCTTTTCTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	58059360	58010831	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_58012611_58013107_58013205_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ES_00008290	chr11	-	4786	27	NIC	ENSMUSG00000037275.15	novel	4922	28	NA	NA	14	-8	combination_of_known_splicesites	FALSE	canonical	3	10	junction_11	61.428471416695	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATCAGAAATGTCTCG	NA	False	NA	-42	True	TATAAA	-4	NA	58059351	58012123	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ES_00008292	chr11	-	507	3	FSM	ENSMUSG00000049755.15	ENSMUST00000130217.2	423	3	-4	-80	-4	46	multi-exon	FALSE	canonical	3	16	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTCTCAAAGTGATGATA	643	False	NA	NA	False	ACTAAA	-29	NA	58214144	58210483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58210781_58213394_58213556_58214095
ES_00008293	chr11	-	3125	1	FSM	ENSMUSG00000049755.15	ENSMUST00000185661.2	3125	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1175	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	58221165	58218040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58218000_58221200
ES_00008294	chr11	-	898	1	FSM	ENSMUSG00000084384.4	ENSMUST00000117893.2	792	1	-12	-94	-12	94	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGGACCAGAGAGACTG	NA	False	NA	NA	False	AATAAA	-36	NA	58284398	58283500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58283500_58284400
ES_00008296	chr11	-	471	1	FSM	ENSMUSG00000085342.2	ENSMUST00000134617.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	503	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTAGAGCAGAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	58400087	58399616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58399600_58400100
ES_00008300	chr11	-	4022	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	0	-1	0	1	multi-exon	FALSE	canonical	3	10	junction_1	4.5	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTTGTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-32	NA	59054565	59046193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59049486_59049663_59050005_59054176
ES_00008301	chr11	-	1099	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	0	-21	0	21	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGCTTATGGCCTCTG	1470	False	NA	1	True	AATAAA	-34	NA	59082778	59074679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ES_00008303	chr11	-	1991	5	FSM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	968.523876835259	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCTTGTGTGTCAGTGC	1955	False	NA	-2	True	AATAAA	-17	NA	59118988	59102237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118701
ES_00008304	chr11	-	1802	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	0	-2	0	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCTTGTGTGTCAGTGC	1847	False	NA	-2	True	AATAAA	-17	NA	59119096	59102237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
ES_00008305	chr11	-	1243	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	1950	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59266483	59263494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
ES_00008308	chr11	-	3412	4	FSM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	2.86744175568088	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	59363300	59352022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59355113_59355837_59355899_59356276_59356404_59363166
ES_00008310	chr11	-	3620	10	NNC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	-14	16	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_7	46.9704398768228	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCTGGAGAGGGAGGC	NA	False	NA	15	True	AATAAA	-41	NA	59397060	59376329	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_59378641_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394590_59394973_59395081_59396653_59396789_59396989
ES_00008311	chr11	-	4092	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	-17	-11	-17	11	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTGTGTCTGGAGAGG	NA	False	NA	10	True	AATAAA	-36	NA	59397487	59376334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
ES_00008312	chr11	-	3782	10	FSM	ENSMUSG00000020472.15	ENSMUST00000101150.9	3771	10	0	-11	0	11	multi-exon	FALSE	canonical	2	12	junction_6	45.5777723603659	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTGTGTCTGGAGAGG	NA	False	NA	10	True	AATAAA	-36	NA	59397470	59376334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394502_59394637_59394973_59395081_59396653_59396789_59396989
ES_00008313	chr11	-	3633	10	NNC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	32.4200821774878	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397042	59376345	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_59378641_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
ES_00008314	chr11	-	1825	2	FSM	ENSMUSG00000043648.8	ENSMUST00000125307.2	948	2	-71	-806	-68	0	multi-exon	FALSE	canonical	3	85	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGCATGTCTACCTTA	NA	False	NA	-13	True	AATAAA	-16	NA	59678539	59674722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59676052_59678043
ES_00008315	chr11	-	3434	13	FSM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	0	3	0	-3	multi-exon	FALSE	canonical	3	222	junction_12	22.951034835057	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAACAGAGGTTGGTAC	NA	False	NA	NA	False	NA	NA	NA	59700842	59682236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
ES_00008316	chr11	-	3567	13	FSM	ENSMUSG00000032633.13	ENSMUST00000148151.8	3567	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_12	94.3328548279972	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	59700750	59682282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686402_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700525
ES_00008319	chr11	-	510	2	FSM	ENSMUSG00000032633.13	ENSMUST00000151453.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGACTTCCGTGGAGATC	NA	False	NA	NA	False	NA	NA	NA	59700537	59699853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59700312_59700485
ES_00008320	chr11	-	590	2	FSM	ENSMUSG00000019373.12	ENSMUST00000126489.2	583	2	0	-7	0	7	multi-exon	FALSE	canonical	3	622	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTCTCTCACTTTTTC	NA	False	NA	3	True	ATTAAA	-34	NA	59709513	59708613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59708935_59709244
ES_00008324	chr11	-	861	6	NIC	ENSMUSG00000000301.17	novel	961	7	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_5	14.8942942095287	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937315	59861439	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59937165
ES_00008325	chr11	-	1032	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	-71	0	-63	0	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937378	59861439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
ES_00008328	chr11	-	4300	19	FSM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	0	-1	0	1	multi-exon	FALSE	canonical	3	238	junction_18	63.0911793643156	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACACAATCTTCAGTGTG	3801	False	NA	NA	False	AATAAA	-22	NA	60111430	60089913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60111278
ES_00008329	chr11	-	4221	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-19	-2	combination_of_known_junctions	FALSE	canonical	3	238	junction_18	63.0911793643156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGATACACACAATCTTCAGT	5297	False	NA	NA	False	AATAAA	-19	NA	60101237	60089916	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
ES_00008333	chr11	-	5000	15	FSM	ENSMUSG00000000538.19	ENSMUST00000102683.11	4999	15	0	-1	0	0	multi-exon	FALSE	canonical	3	31	junction_8	7.39553091745416	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGTGTGATGTCTGAT	NA	False	NA	0	True	AATAAA	-15	NA	60243731	60117539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60121068_60121926_60121964_60123723_60123784_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
ES_00008334	chr11	-	1902	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	0	-89	0	89	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAAATGGCTCAGCAGT	NA	False	NA	89	True	TTTAAA	-40	NA	60307877	60291362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ES_00008335	chr11	-	949	8	FSM	ENSMUSG00000042709.16	ENSMUST00000145532.9	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	104.174892192242	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGCTGCTGGCACCCTT	NA	False	NA	NA	False	NA	NA	NA	60307844	60292303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ES_00008339	chr11	-	223	2	FSM	ENSMUSG00000084273.2	ENSMUST00000122193.2	382	2	0	159	0	-159	multi-exon	TRUE	canonical	0	0	junction_1	0	858	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCATCCTTGAGCCCTGC	NA	False	NA	NA	False	AATACA	-43	NA	60463036	60462607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60462750_60462955
ES_00008341	chr11	-	215	1	FSM	ENSMUSG00000096363.2	ENSMUST00000177760.2	382	1	-8	175	-8	-175	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCGTCTGCGAGGTGG	NA	False	NA	NA	False	NA	NA	NA	60482936	60482721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60482700_60482900
ES_00008344	chr11	-	231	1	FSM	ENSMUSG00000096088.2	ENSMUST00000179586.2	382	1	-8	159	-8	-159	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCATCCTTGAGCCCTGC	NA	False	NA	NA	False	NA	NA	NA	60510561	60510330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60510300_60510600
ES_00008347	chr11	-	4031	30	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	5	-1	at_least_one_novel_splicesite	TRUE	canonical	3	67	junction_19	52.3939163762945	571	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAACTAGTTTTTAAAAAA	NA	False	NA	NA	False	ATTAAA	-45	NA	60618044	60604949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611321_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
ES_00008348	chr11	-	3526	20	NIC	ENSMUSG00000002814.16	novel	3741	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_19	35.8833907056155	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGGTGGCATTCAGTC	NA	False	NA	1	True	AATAAA	-16	NA	60668091	60630883	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747_60667903_60668017
ES_00008350	chr11	-	3542	18	FSM	ENSMUSG00000002814.16	ENSMUST00000102668.10	3542	18	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	18.3744218184581	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTAAGTAGATCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	60668091	60632716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
ES_00008352	chr11	-	2858	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	0	0	0	0	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60702091	60678929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ES_00008353	chr11	-	1898	5	FSM	ENSMUSG00000020534.15	ENSMUST00000172804.8	582	5	-965	-351	-965	4	multi-exon	FALSE	canonical	3	983	junction_2	110.198400623603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGCTTACTCGGTGGG	9094	False	NA	-12	True	ATTAAA	-16	NA	60686788	60679722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661
ES_00008357	chr11	-	1511	3	FSM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7583	False	NA	-5	True	ATTAAA	-17	NA	60769864	60755277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60756175_60766585_60766874_60769538
ES_00008358	chr11	-	1457	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7349	False	NA	-5	True	ATTAAA	-17	NA	60770098	60755277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60756175_60769538
ES_00008359	chr11	-	3887	3	FSM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	11	281	11	-281	multi-exon	TRUE	canonical	3	156	junction_2	31	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTCCTGGTGGGGACAG	6635	False	NA	NA	False	NA	NA	NA	60804627	60793352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60796948_60797707_60797827_60804454
ES_00008360	chr11	-	4439	13	FSM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	0	-5	0	5	multi-exon	FALSE	canonical	3	276	junction_4	25.4114748795806	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTGCCTCATTACTAAC	NA	False	NA	1	True	AATAAA	-25	NA	61065881	61042605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61045340_61046005_61046156_61046593_61046657_61047996_61048089_61049117_61049245_61050030_61050190_61051397_61051504_61052139_61052288_61053652_61053823_61054551_61054654_61057496_61057611_61059085_61059219_61065540
ES_00008361	chr11	-	889	5	FSM	ENSMUSG00000042506.16	ENSMUST00000174220.2	889	5	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_3	18.1314643644687	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAGAGGAAATGGAAT	NA	False	NA	NA	False	NA	NA	NA	61065855	61053597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61053823_61054551_61054654_61057496_61057611_61059085_61059219_61065540
ES_00008362	chr11	-	433	1	FSM	ENSMUSG00000082626.2	ENSMUST00000117939.2	456	1	82	-59	82	59	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGTCCCTGAAATCAGA	NA	False	NA	NA	False	NA	NA	NA	61096919	61096486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61096500_61096900
ES_00008363	chr11	-	3091	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	3	-3	3	3	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	1728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTAATTTTGACCT	1336	False	NA	NA	False	AATAAA	-17	NA	61158008	61135675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
ES_00008364	chr11	-	1949	12	NIC	ENSMUSG00000069855.10	novel	2377	17	NA	NA	5531	-15	combination_of_known_splicesites	FALSE	canonical	2	5	junction_9	5.65393156562408	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCTAAGATCTAAAAT	NA	False	NA	NA	False	GATAAA	-3	NA	61227879	61192471	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61216622_61216721_61219353_61219452_61227640
ES_00008365	chr11	-	2640	17	FSM	ENSMUSG00000010122.15	ENSMUST00000010267.10	2639	17	0	-1	0	1	multi-exon	FALSE	canonical	2	6	junction_16	9.25675429078681	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGCTGTAGATTATTAT	NA	False	NA	0	True	ATTAAA	-19	NA	61268907	61234225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61258498_61258544_61260076_61260120_61260943_61261093_61262581_61262651_61264180_61264283_61268738
ES_00008366	chr11	-	460	5	FSM	ENSMUSG00000010122.15	ENSMUST00000147583.2	567	5	107	0	107	0	multi-exon	FALSE	canonical	1	2	junction_4	15.204851199535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGCTATCATTGTATACA	NA	False	NA	NA	False	NA	NA	NA	61256371	61253534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61256267
ES_00008367	chr11	-	1360	4	NNC	ENSMUSG00000001034.18	novel	3255	6	NA	NA	223	0	intron_retention	FALSE	canonical	2	15	junction_3	104.83744030111	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61381541	61379637	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381430
ES_00008368	chr11	-	3033	6	ISM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	108	3	0	-3	intron_retention	FALSE	canonical	3	175	junction_5	27.8107892732299	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCTGCGTCATTTTTGG	NA	False	NA	-2	True	AATACA	-16	NA	61385014	61379640	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472
ES_00008369	chr11	-	3255	6	FSM	ENSMUSG00000001034.18	ENSMUST00000152755.8	3255	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	83.0093970584054	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385092	61379637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384331
ES_00008370	chr11	-	3068	7	FSM	ENSMUSG00000001034.18	ENSMUST00000108714.2	3069	7	1	0	1	0	multi-exon	FALSE	canonical	3	31	junction_5	75.7840499196382	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385121	61379637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384422_61384781_61384905
ES_00008372	chr11	-	4231	11	NIC	ENSMUSG00000001036.18	novel	4243	10	NA	NA	54	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	133.765615910816	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470430	61408074	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61438833_61438869_61444335_61444406_61470392
ES_00008373	chr11	-	4313	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	38	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	123.776780367017	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470446	61408074	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61434983_61435155_61436975_61437738_61470392
ES_00008374	chr11	-	4208	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	-1	0	1	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTTTTGGCTGTGTCCT	NA	False	NA	1	True	TATAAA	-26	NA	61470511	61408073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
ES_00008375	chr11	-	4321	12	NIC	ENSMUSG00000001036.18	novel	4243	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_11	143.585146219503	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470484	61408074	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61438833_61438869_61444335_61444406_61470392
ES_00008377	chr11	-	4454	11	FSM	ENSMUSG00000001036.18	ENSMUST00000179936.8	4452	11	0	-2	0	1	multi-exon	FALSE	canonical	3	20	junction_7	141.578246916679	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTTTTGGCTGTGTCCT	NA	False	NA	1	True	TATAAA	-26	NA	61470513	61408073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61434983_61435155_61436975_61437738_61456647_61456721_61470392
ES_00008381	chr11	-	1738	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	0	-4	0	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	292	False	NA	-3	True	AATAAA	-26	NA	61652838	61620475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
ES_00008382	chr11	-	1841	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	0	-4	0	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	242	False	NA	-3	True	AATAAA	-26	NA	61652888	61620475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
ES_00008383	chr11	-	1771	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	216	False	NA	-3	True	AATAAA	-26	NA	61652914	61620475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
ES_00008385	chr11	-	530	5	FSM	ENSMUSG00000020528.15	ENSMUST00000123575.2	482	5	-48	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	60.5449213394485	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCTTCCTTGGAAATAT	216	False	NA	NA	False	NA	NA	NA	61652914	61646235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
ES_00008386	chr11	-	5813	27	FSM	ENSMUSG00000004798.15	ENSMUST00000004920.4	5743	27	-72	2	-72	-2	multi-exon	TRUE	canonical	3	9	junction_8	4.53666848543571	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTATTTCATATCATG	NA	False	NA	NA	False	AATAAA	-20	NA	61745971	61666476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61668666_61670499_61670636_61672417_61672576_61672831_61672951_61674362_61674542_61678254_61678464_61682259_61682410_61689888_61689993_61690285_61690477_61690727_61691015_61692308_61692390_61694467_61694614_61698887_61699026_61703543_61703605_61710110_61710283_61715464_61715554_61716667_61716716_61718427_61718511_61720217_61720277_61721415_61721518_61724238_61724313_61725605_61725780_61730935_61730973_61732124_61732158_61741887_61741930_61744091_61744185_61745312
ES_00008387	chr11	-	3874	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	17.9790127081323	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTGTGCATTTTGT	NA	False	NA	NA	False	TTTAAA	-30	NA	61821078	61762132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
ES_00008388	chr11	-	739	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	-7	0	7	multi-exon	FALSE	canonical	3	218	junction_4	57.8986182909402	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATTGAAGTGCTAGTA	NA	False	NA	-8	True	AATAAA	-32	NA	62172201	62158042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
ES_00008389	chr11	-	717	4	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	0	7	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	149.035417118065	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATTGAAGTGCTAGTA	NA	False	NA	-8	True	AATAAA	-32	NA	62172201	62158042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62158433_62159529_62159635_62164537_62164641_62172082
ES_00008390	chr11	-	607	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62158433_62159529_62159635_62172082
ES_00008391	chr11	-	9037	46	FSM	ENSMUSG00000018501.18	ENSMUST00000018645.13	9037	46	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_24	104.955275601292	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTTTAGCTATGCATCA	NA	False	NA	NA	False	NA	NA	NA	62348158	62207251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00008392	chr11	-	6328	28	FSM	ENSMUSG00000018501.18	ENSMUST00000155712.9	6328	28	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_23	113.311629488015	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTCCTATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	62269343	62207515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340
ES_00008393	chr11	-	8800	48	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	136	junction_28	89.8546081797492	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTCCTATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	62348149	62207515	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00008394	chr11	-	8321	47	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	28	-304	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	109.655270531733	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTTGTGACGTAAAGA	NA	False	NA	-5	True	AATAAA	-30	NA	62348121	62207819	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210252_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00008395	chr11	-	8634	47	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	-304	combination_of_known_junctions	FALSE	canonical	3	133	junction_28	95.8133548118552	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTTGTGACGTAAAGA	NA	False	NA	-5	True	AATAAA	-30	NA	62348149	62207819	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00008396	chr11	-	8652	47	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	-304	combination_of_known_junctions	FALSE	canonical	3	93	junction_29	105.245686547535	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTTGTGACGTAAAGA	NA	False	NA	-5	True	AATAAA	-30	NA	62348149	62207819	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00008398	chr11	-	7243	45	FSM	ENSMUSG00000018501.18	ENSMUST00000101067.10	7243	45	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	125.313153194852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAATT	NA	False	NA	NA	False	NA	NA	NA	62329307	62208622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240220_62240320_62242203_62242373_62244059_62244161_62245208_62245299_62245396_62245515_62249680_62249842_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163
ES_00008399	chr11	-	793	4	FSM	ENSMUSG00000018501.18	ENSMUST00000131911.8	793	4	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	81.0308583195316	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGATTTCTATCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	62220870	62216087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62216456_62217931_62218076_62220266_62220479_62220801
ES_00008400	chr11	-	2979	20	FSM	ENSMUSG00000018501.18	ENSMUST00000151498.9	2979	20	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_12	89.6738936492448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAAAACCATACGATGG	NA	False	NA	NA	False	GATAAA	-44	NA	62283485	62235610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264401_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330
ES_00008407	chr11	-	3171	9	FSM	ENSMUSG00000018501.18	ENSMUST00000069456.11	3171	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	63.6836664695116	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCGCACCATAAATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	62348149	62292208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00008410	chr11	-	1045	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	0	-13	0	13	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTTTGAACTTTGACT	8371	False	NA	-1	True	AATAAA	-32	NA	62430087	62415758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
ES_00008411	chr11	-	492	4	FSM	ENSMUSG00000018509.9	ENSMUST00000123181.2	492	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	628.6403317213	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAGTACTTAGGAGGAG	8629	False	NA	NA	False	NA	NA	NA	62429829	62424712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62424781_62424871_62425049_62427107_62427207_62429681
ES_00008412	chr11	-	835	2	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	18830	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGACCTTGAATTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	62444034	62442971	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_62443404_62443631
ES_00008413	chr11	-	204	1	Intergenic	novelGene_577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGGGAAGGGAAAATGAT	7518	False	NA	NA	False	NA	NA	NA	62459051	62458847	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_62458800_62459100
ES_00008414	chr11	-	1984	4	FSM	ENSMUSG00000046417.15	ENSMUST00000057194.9	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_3	14.7044966667419	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGACTGTGCTTTATTAG	5470	False	NA	-2	True	AATACA	-17	NA	62539349	62495709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538970
ES_00008416	chr11	-	3051	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	62680288	62669212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ES_00008419	chr11	-	876	1	FSM	ENSMUSG00000081455.2	ENSMUST00000118415.2	636	1	-129	-111	-129	111	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCCTGCGTGTAAAATTC	NA	False	NA	NA	False	NA	NA	NA	63737773	63736897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_63736900_63737800
ES_00008420	chr11	-	4993	2	FSM	ENSMUSG00000070407.6	ENSMUST00000094103.4	4911	2	-83	1	-83	-1	multi-exon	FALSE	canonical	3	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGAGTATGTTCCTAT	NA	False	NA	-3	True	AATAAA	-14	NA	63813199	63776618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_63780572_63812159
ES_00008421	chr11	-	2915	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5007	False	NA	-4	True	AATAAA	-14	NA	63970292	63853452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ES_00008422	chr11	-	706	3	FSM	ENSMUSG00000042148.9	ENSMUST00000125702.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	15.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTACACATGATTGTGGA	5005	False	NA	NA	False	NA	NA	NA	63970294	63962223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_63962663_63964362_63964497_63970161
ES_00008423	chr11	-	4213	21	FSM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	12	-151	12	151	multi-exon	FALSE	canonical	3	13	junction_17	3.6779749863206	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCAAGTCCTCGCCGTG	NA	False	NA	NA	False	NA	NA	NA	65053775	64892713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_64894277_64896279_64896332_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
ES_00008424	chr11	-	3697	11	FSM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	0	-2	0	2	multi-exon	FALSE	canonical	3	217	junction_10	28.4703354388388	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCTGGTTCTTTTCTTT	NA	False	NA	1	True	ATTAAA	-44	NA	65679123	65579066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65678961
ES_00008425	chr11	-	3489	10	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	0	-31	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	72.4284235863924	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCATATACAGGAGAGTT	NA	False	NA	-32	True	ATTAAA	-11	NA	65679123	65579099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65647094_65647198_65678961
ES_00008427	chr11	-	751	7	FSM	ENSMUSG00000033352.12	ENSMUST00000140301.8	751	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	78.7416662257029	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTTCTGTTGGCTAAA	NA	False	NA	NA	False	NA	NA	NA	65679111	65587113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65647094_65647198_65678961
ES_00008429	chr11	-	641	2	FSM	ENSMUSG00000056752.17	ENSMUST00000142836.2	1797	2	49	1107	31	-1107	multi-exon	FALSE	canonical	1	1	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAAGTACCACCAGCCCA	1982	False	NA	NA	False	NA	NA	NA	66059328	66050684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_66050880_66058882
ES_00008430	chr11	-	1351	1	Intergenic	novelGene_581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATATATGCATCAAATGT	NA	False	NA	1	True	NA	NA	NA	66788727	66787376	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_66787400_66788700
ES_00008431	chr11	-	585	2	Antisense	novelGene_ENSMUSG00000048070.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAGGAATCACCATTT	NA	False	NA	NA	False	AAAACA	-2	NA	66804929	66789006	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_66789509_66804846
ES_00008433	chr11	-	1480	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-41	-156	-17	20	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGAAGGGGCTGTGTT	NA	False	NA	NA	False	AATAAA	-30	NA	66943437	66928710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
ES_00008434	chr11	-	4523	15	FSM	ENSMUSG00000020905.12	ENSMUST00000021288.10	4462	15	-63	2	-63	-2	multi-exon	FALSE	canonical	3	14	junction_7	4.31950960935453	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATCCTTTCCTTTCCTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	67813042	67745350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_67747371_67766088_67766254_67767198_67767358_67770621_67770971_67771090_67771218_67772031_67772110_67774031_67774136_67778575_67778688_67782175_67782312_67783838_67783975_67788046_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
ES_00008437	chr11	-	2382	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ES_00008440	chr11	-	571	3	FSM	ENSMUSG00000032892.15	ENSMUST00000143444.8	568	3	0	-3	0	0	multi-exon	FALSE	canonical	3	482	junction_2	39.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7736	False	NA	-2	True	AATAAA	-22	NA	68864169	68863309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_68863568_68863768_68863855_68863942
ES_00008441	chr11	-	967	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7290	False	NA	-2	True	AATAAA	-22	NA	68864615	68863309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
ES_00008443	chr11	-	6373	28	FSM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_27	41.3360546031052	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTTTCCGATGGCCT	NA	False	NA	-11	True	NA	NA	NA	68899286	68876522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
ES_00008449	chr11	-	3977	19	FSM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	-120	4	-120	-4	multi-exon	TRUE	canonical	3	88	junction_15	16.162847964421	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTAATGTTTAAGAATGT	NA	False	NA	NA	False	AATAAA	-21	NA	69214721	69190316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
ES_00008450	chr11	-	3973	19	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-120	-4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_13	27.4246442294355	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTAATGTTTAAGAATGT	NA	False	NA	NA	False	AATAAA	-21	NA	69214721	69190316	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209867_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
ES_00008453	chr11	-	1896	3	FSM	ENSMUSG00000018474.19	ENSMUST00000135909.8	1882	3	-14	0	-14	0	multi-exon	FALSE	canonical	3	57	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	177	False	NA	-11	True	TATAAA	-16	NA	69236859	69234098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69235305_69235961_69236089_69236296
ES_00008461	chr11	-	753	4	FSM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	12.1197726417986	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTGGAGTTTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	69286159	69284437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69284695_69285453_69285673_69285797_69285875_69285959
ES_00008466	chr11	-	696	5	FSM	ENSMUSG00000005237.15	ENSMUST00000208777.2	696	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	1.80277563773199	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGACACCCCCACCTCGT	8925	False	NA	NA	False	NA	NA	NA	69409215	69406807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69406938_69407300_69407507_69407842_69407931_69408396_69408555_69409101
ES_00008467	chr11	-	1927	11	NNC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	0	20852	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	50.7646530570238	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACATTAAATGAAAGCTTA	NA	False	NA	NA	False	NA	NA	NA	69470150	69431731	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69431774_69452590_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ES_00008469	chr11	-	1897	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	-6	0	5	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTGTCTGTTCGGGGT	NA	False	NA	2	True	TATAAA	-21	NA	69470150	69452578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ES_00008470	chr11	-	1080	5	ISM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	15651	2	249	-2	intron_retention	FALSE	canonical	3	153	junction_4	13.7908484148003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGAGTCATTGTGTCTG	NA	False	NA	-6	True	TATAAA	-13	NA	69454499	69452586	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129
ES_00008471	chr11	-	3019	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	-164	-13	-51	13	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGCTTGTCTTTTTCT	NA	False	NA	6	True	TATAAA	-23	NA	69496819	69490548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
ES_00008472	chr11	-	3791	6	FSM	ENSMUSG00000041329.14	ENSMUST00000144425.2	711	6	-1445	-1635	771	13	multi-exon	FALSE	canonical	3	193	junction_2	3.13687742827162	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGCTTGTCTTTTTCT	NA	False	NA	6	True	TATAAA	-23	NA	69495884	69490548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250
ES_00008473	chr11	-	233	2	Intergenic	novelGene_590	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	148	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAGAAAGCAATCATTG	8228	False	NA	NA	False	NA	NA	NA	69538278	69510436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_69510585_69538193
ES_00008474	chr11	-	1804	12	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	33233	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4046.99544708915	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAGTCGATTAGAAGCT	NA	False	NA	NA	False	NA	NA	NA	69563142	69524528	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69524563_69557764_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ES_00008476	chr11	-	1321	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6761	False	NA	-4	True	AATAAA	-33	NA	69553468	69547522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ES_00008479	chr11	-	1236	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	-6	0	6	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCTCATTAAGAGTAC	3250	False	NA	5	True	AATAAA	-25	NA	69556979	69555032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
ES_00008480	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	3255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ES_00008481	chr11	-	1845	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_9	1461.90417007037	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ES_00008482	chr11	-	3168	7	FSM	ENSMUSG00000059796.17	ENSMUST00000123995.8	3167	7	0	-1	0	0	multi-exon	FALSE	canonical	3	9657	junction_6	1712.7377126175	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559580_69559903_69561574_69561753_69561803_69563104
ES_00008484	chr11	-	435	2	FSM	ENSMUSG00000059796.17	ENSMUST00000140186.2	435	2	0	0	0	0	multi-exon	FALSE	canonical	3	14535	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACATCTTGTTTTTGTT	1340	False	NA	-53	True	GGGGCT	-39	NA	69558889	69558207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69558601_69558847
ES_00008488	chr11	-	2318	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	-5	0	5	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTCTTCCTTAAGGG	8530	False	NA	0	True	AATAAA	-22	NA	69572672	69563935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ES_00008489	chr11	-	860	6	FSM	ENSMUSG00000005204.13	ENSMUST00000153516.8	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	911	junction_4	60.2215908125981	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTCCTTCCATGTTCAG	NA	False	NA	NA	False	NA	NA	NA	69568945	69564100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798
ES_00008493	chr11	-	207	2	Intergenic	novelGene_592	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTATCTTTTAAAAACAT	8895	False	NA	NA	False	NA	NA	NA	69594655	69587378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_69587414_69594483
ES_00008494	chr11	-	6745	29	FSM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	0	-5	0	5	multi-exon	FALSE	canonical	2	202	junction_15	57.5883527056204	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTACTGACTGCTTAA	NA	False	NA	2	True	AATAAA	-27	NA	69649463	69624817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
ES_00008495	chr11	-	2169	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	-13	-1	-13	1	multi-exon	TRUE	canonical	2	3	junction_10	6.56429737291052	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGTCTATTTTTAAC	-10	True	NA	-1	True	ATTAAA	-25	NA	69686782	69674860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
ES_00008504	chr11	-	1182	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	0	21719	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7899.66008586586	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACAGAACCTCCATGCT	6467	False	NA	NA	False	NA	NA	NA	69812016	69785820	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69785856_69807545_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ES_00008505	chr11	-	1501	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	0	-16	0	5	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTGTCCAGACTGGGCCT	9745	False	NA	3	True	AATAAA	-31	NA	69791764	69788172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
ES_00008506	chr11	-	1653	9	FSM	ENSMUSG00000018570.18	ENSMUST00000102580.10	1640	9	3	-16	3	5	multi-exon	FALSE	canonical	0	0	junction_1	6.57647321898295	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTGTCCAGACTGGGCCT	9729	False	NA	3	True	AATAAA	-31	NA	69791780	69788172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69788319_69788444_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
ES_00008507	chr11	-	1283	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	-2	0	2	multi-exon	FALSE	canonical	3	22	junction_6	9789.73126404511	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTGTTTATTTGTTGA	6572	False	NA	-7	True	AATAAA	-28	NA	69811911	69807537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
ES_00008508	chr11	-	1409	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7027	False	NA	-15	True	AATAAA	-20	NA	69811456	69807545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
ES_00008509	chr11	-	1259	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108612.8	1259	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_5	7943.03597876782	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811626
ES_00008510	chr11	-	1353	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108611.8	1353	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	9790.70116658319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811626
ES_00008511	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	1716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ES_00008512	chr11	-	1437	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ES_00008513	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	9665.3113547021	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
ES_00008518	chr11	-	2615	11	FSM	ENSMUSG00000018566.15	ENSMUST00000018710.13	2524	11	-91	0	-52	0	multi-exon	FALSE	canonical	3	12	junction_2	3.57910603363466	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGTCCTGTGCTGGA	NA	False	NA	2	True	ATTAAA	-40	NA	69839066	69833368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69834399_69834884_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
ES_00008520	chr11	-	1109	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	991	-2	0	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	5658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9891	False	NA	2	True	AATAAA	-32	NA	69871087	69859047	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ES_00008521	chr11	-	1505	9	NNC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	250	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	187.68990383076	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAAACCTCTGGTAATG	9150	False	NA	-8	True	AATAAA	-22	NA	69871828	69859057	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039_69871389_69871723
ES_00008523	chr11	-	1110	8	NNC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	195.628969934289	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9884	False	NA	0	True	AATAAA	-30	NA	69871094	69859049	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69859363_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ES_00008525	chr11	-	2191	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	-3	-20	0	20	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCTCCACTGCCTGCC	NA	False	NA	24	True	AATAAA	-41	NA	69906237	69900988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
ES_00008526	chr11	-	2020	19	FSM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_17	40.1080331229001	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGGGGTGATGGAGT	NA	False	NA	-57	True	NA	NA	NA	69906213	69901069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
ES_00008527	chr11	-	696	4	FSM	ENSMUSG00000018574.15	ENSMUST00000146129.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	29.9481032602883	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTGGAAACGTTGGCC	NA	False	NA	NA	False	NA	NA	NA	69903400	69902047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69902425_69902509_69902597_69903011_69903117_69903273
ES_00008532	chr11	-	3366	9	FSM	ENSMUSG00000000317.12	ENSMUST00000000326.12	3366	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.59947894041409	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTTGTGTCCTAGGATT	NA	False	NA	NA	False	AATAAA	-19	NA	70120565	70114953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70116970_70117312_70117451_70117534_70117666_70117734_70117900_70118452_70118578_70118859_70119208_70119313_70119536_70119806_70119998_70120535
ES_00008533	chr11	-	643	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108575.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	223.35671519393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128679	70126031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126295_70126822_70127038_70128356_70128452_70128609
ES_00008534	chr11	-	667	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108579.8	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	177.768263634304	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128730	70126031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126295_70126849_70127038_70128356_70128452_70128609
ES_00008535	chr11	-	779	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ES_00008536	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
ES_00008537	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ES_00008538	chr11	-	1688	8	FSM	ENSMUSG00000040904.11	ENSMUST00000176116.8	1688	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_7	221.001523681145	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70130656	70126031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130485
ES_00008539	chr11	-	792	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	190.587742260619	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128728	70126033	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_70126295_70126822_70127038_70127702_70127805_70128356_70128452_70128609
ES_00008540	chr11	-	1621	8	FSM	ENSMUSG00000040904.11	ENSMUST00000176268.2	1621	8	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	213.450371806867	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTTTTATACAGAAAAT	NA	False	NA	-56	True	NA	NA	NA	70130629	70126075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
ES_00008545	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_2	4	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130668	70128949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70129297_70129763_70129841_70130481
ES_00008546	chr11	-	2966	14	FSM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	0	35	0	-35	multi-exon	FALSE	canonical	3	19	junction_6	3.422860840198	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAATAGTTCTAAATAAAGG	7402	False	NA	NA	False	NA	NA	NA	70146179	70132317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
ES_00008547	chr11	-	2280	8	FSM	ENSMUSG00000000320.11	ENSMUST00000108574.3	2314	8	0	34	0	-34	multi-exon	FALSE	canonical	3	24	junction_3	2.55550625999976	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTCTATTCACACATGA	7414	False	NA	NA	False	NA	NA	NA	70146167	70139822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
ES_00008548	chr11	-	4334	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	0	-899	0	899	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATAAATTTAAAACACACA	NA	False	NA	NA	False	NA	NA	NA	70300854	70282809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
ES_00008549	chr11	-	564	4	FSM	ENSMUSG00000018921.12	ENSMUST00000135148.2	562	4	0	-2	0	2	multi-exon	FALSE	canonical	2	14	junction_1	310.061284264901	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGATCTTTTAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	70300857	70293454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70293580_70296452_70296559_70297082_70297148_70300589
ES_00008550	chr11	-	2699	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	7.17635004720366	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGACTTCTGCAGACTC	7600	False	NA	NA	False	NA	NA	NA	70350810	70344808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
ES_00008552	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537884	70535021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ES_00008555	chr11	-	871	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	-10	0	10	multi-exon	FALSE	canonical	3	9692	junction_2	172	945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTTTGCACTTGGCAT	NA	False	NA	NA	False	AATAAA	-26	NA	70545470	70542665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70543048_70543612_70543806_70545174
ES_00008556	chr11	-	1164	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	0	-5	0	5	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGATACTAGTCCATTGA	NA	False	NA	-4	True	AATAAA	-38	NA	70560242	70554591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
ES_00008559	chr11	-	1012	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108541.9	1150	7	110	28	64	-20	multi-exon	FALSE	canonical	1	1	junction_6	4.41273409829124	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTAAAGAGCACCAAATA	NA	False	NA	NA	False	NA	NA	NA	70590871	70579214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590813
ES_00008560	chr11	-	273	1	FSM	ENSMUSG00000082983.2	ENSMUST00000121235.2	273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCTACCACCTGAGACT	3577	False	NA	NA	False	NA	NA	NA	70653205	70652932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70652900_70653200
ES_00008561	chr11	-	389	1	FSM	ENSMUSG00000084139.2	ENSMUST00000121605.2	389	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGTCCAGAGACTAATT	NA	False	NA	NA	False	NA	NA	NA	70800471	70800082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70800100_70800500
ES_00008562	chr11	-	2472	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	-19	0	5	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATGGGTTGGTTGGTTTG	NA	False	NA	20	True	AATAAA	-39	NA	70860799	70833878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ES_00008564	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	False	NA	-29	True	AATAAA	-19	NA	70860780	70833927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ES_00008569	chr11	-	541	1	FSM	ENSMUSG00000018446.9	ENSMUST00000179291.2	1998	1	1460	-3	1460	3	mono-exon	FALSE	NA	NA	NA	NA	NA	471	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGCCAAAAAAGAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	70872373	70871832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70871800_70872400
ES_00008573	chr11	-	3668	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	0	-2	0	2	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATCTTGTATTTTTAATT	NA	False	NA	-1	True	NA	NA	NA	70910129	70898265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
ES_00008574	chr11	-	1466	7	FSM	ENSMUSG00000018442.14	ENSMUST00000171041.8	1466	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	208.810719712056	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	-9	True	AATAAA	-20	NA	70910667	70900758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70910216
ES_00008578	chr11	-	1524	6	FSM	ENSMUSG00000040554.11	ENSMUST00000048207.10	2309	6	29	756	29	-2	multi-exon	TRUE	canonical	0	0	junction_5	1.72046505340853	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTATTTGATTTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	71928286	71919544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_71920283_71921032_71921175_71921251_71921429_71922242_71922432_71927437_71927618_71928188
ES_00008579	chr11	-	504	4	FSM	ENSMUSG00000040543.17	ENSMUST00000132781.2	879	4	0	375	0	-375	multi-exon	FALSE	canonical	3	7	junction_1	2.05480466765633	700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGTTACCTCCCCCCA	NA	False	NA	NA	False	NA	NA	NA	71952387	71948845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_71948996_71949211_71949361_71949663_71949781_71952299
ES_00008582	chr11	-	1161	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72106418	72102549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
ES_00008583	chr11	-	837	3	FSM	ENSMUSG00000020801.9	ENSMUST00000129264.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	10.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	72105879	72104033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72104700_72104963_72105042_72105786
ES_00008584	chr11	-	3888	12	FSM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	-568	9	-5	-9	multi-exon	FALSE	canonical	3	36	junction_1	6.58196885814471	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTCCTGGGTGCCTGG	NA	False	NA	-9	True	AATAAA	-14	NA	72158053	72132823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289
ES_00008586	chr11	-	991	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4500	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247622	72235547	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
ES_00008587	chr11	-	1432	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	-35	0	-35	0	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72252734	72235547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
ES_00008588	chr11	-	3585	8	FSM	ENSMUSG00000045667.15	ENSMUST00000108500.8	3572	8	0	-13	0	13	multi-exon	FALSE	canonical	3	500	junction_3	27.0237990350305	892	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCATTTGTAATTCAGCA	NA	False	NA	7	True	ATTAAA	-28	NA	72302537	72279976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72302069
ES_00008589	chr11	-	310	3	FSM	ENSMUSG00000040447.16	ENSMUST00000129274.8	2365	3	143	1912	143	-713	multi-exon	FALSE	canonical	2	3	junction_2	0.5	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTGCAGGCCAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	72345224	72344379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72344427_72344879_72345044_72345125
ES_00008590	chr11	-	844	5	ISM	ENSMUSG00000020798.15	ENSMUST00000021154.7	1804	11	20575	1	20575	-1	3prime_fragment	FALSE	canonical	3	5	junction_4	5.24404424085076	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCAGATTTCAGAGCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	72420552	72388986	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359
ES_00008593	chr11	-	2363	4	FSM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	30	0	15	0	multi-exon	FALSE	canonical	2	5	junction_3	4.02768199119819	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTTTTTTTCTTTTG	NA	False	NA	0	True	AATAAA	-36	NA	72686652	72668057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686338
ES_00008596	chr11	-	1337	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	-5	0	5	multi-exon	FALSE	canonical	3	946	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCATGGAATTTGTAGTC	NA	False	NA	-22	True	AATAAA	-30	NA	73067863	73066339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73067578_73067764
ES_00008597	chr11	-	2567	11	FSM	ENSMUSG00000005949.10	ENSMUST00000006103.9	2570	11	3	0	3	0	multi-exon	FALSE	canonical	3	46	junction_10	9.23525852372309	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGGAACGTTTACTAGA	4468	False	NA	0	True	ATTAAA	-24	NA	73089865	73074421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
ES_00008598	chr11	-	2729	12	FSM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	0	-6	0	5	multi-exon	FALSE	canonical	3	14	junction_11	20.3534877308514	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACGTTTACTAGATGACA	4465	False	NA	5	True	ATTAAA	-29	NA	73089868	73074416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089743
ES_00008599	chr11	-	1517	6	FSM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	13	0	-7	0	multi-exon	FALSE	canonical	3	11	junction_5	4.1182520563948	1379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215447	73195817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
ES_00008601	chr11	-	549	1	FSM	ENSMUSG00000081932.2	ENSMUST00000119927.2	622	1	29	44	29	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATGAGGAAGAGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	73968937	73968388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73968400_73968900
ES_00008606	chr11	-	4847	23	FSM	ENSMUSG00000038351.15	ENSMUST00000057631.12	4743	23	-101	-3	-101	3	multi-exon	TRUE	canonical	3	35	junction_12	13.4016928744404	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGATGGCTATTTGTGG	NA	False	NA	0	True	AATAAA	-22	NA	74787987	74740083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759565_74759840_74760004_74782821_74782898_74787650
ES_00008607	chr11	-	5755	24	FSM	ENSMUSG00000038351.15	ENSMUST00000081799.6	4873	24	-878	-4	-878	-1	multi-exon	FALSE	canonical	3	24	junction_12	16.1025776095344	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCTCTGATGGCTATTT	NA	False	NA	-4	True	AATAAA	-18	NA	74788764	74740087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74754385_74754521_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759565_74759840_74760004_74782821_74782898_74787650
ES_00008608	chr11	-	3699	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.2140833662459	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACACGATGGTAAGAGA	NA	False	NA	NA	False	AATAAA	-13	NA	74816624	74797184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
ES_00008609	chr11	-	3183	8	FSM	ENSMUSG00000001323.18	ENSMUST00000121738.8	3183	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	16.4527771987291	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATCTCATTTATTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	74816774	74797624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
ES_00008611	chr11	-	260	1	FSM	ENSMUSG00000082481.2	ENSMUST00000119773.2	400	1	11	129	11	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTAAAATTGATCGAGAG	NA	False	NA	NA	False	GATAAA	-39	NA	74962028	74961768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74961800_74962000
ES_00008612	chr11	-	2671	2	FSM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	0	-1	0	1	multi-exon	FALSE	canonical	3	105	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGTAGGCCCTGGCTC	1637	False	NA	NA	False	AATAAA	-19	NA	75069661	75066766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75069214_75069437
ES_00008613	chr11	-	2114	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	25	0	25	0	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGGTGGAAGTCA	NA	False	NA	53	True	NA	NA	NA	75081320	75068468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
ES_00008615	chr11	-	5080	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	0	-3	0	3	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTCTGACTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	75239150	75188988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ES_00008617	chr11	-	285	2	FSM	ENSMUSG00000000751.14	ENSMUST00000149365.2	285	2	0	0	0	0	multi-exon	FALSE	canonical	3	1885	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTCACTCACTCACT	NA	False	NA	NA	False	NA	NA	NA	75239119	75232803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75233021_75239051
ES_00008618	chr11	-	1934	8	FSM	ENSMUSG00000085359.2_ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	-118	16	-118	-16	multi-exon	TRUE	canonical	3	25	junction_1	3.91751691451488	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTACAAATATCTGGGGA	5260	False	NA	NA	False	NA	NA	NA	75313645	75300610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
ES_00008620	chr11	-	6879	10	FSM	ENSMUSG00000045374.19	ENSMUST00000173320.8	6908	10	22	7	22	-1	multi-exon	TRUE	canonical	2	7	junction_2	4.57043640026736	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGAGTGAGGCTGTGT	2831	False	NA	-7	True	AATAAA	-18	NA	75345521	75331776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75332916_75335080_75335261_75335523_75335670_75336229_75336920_75338689_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
ES_00008622	chr11	-	429	1	FSM	ENSMUSG00000081485.6	ENSMUST00000122170.2	192	1	-101	-136	-101	136	mono-exon	FALSE	NA	NA	NA	NA	NA	1000	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTAATGTTAAAAAGGGGG	NA	False	NA	NA	False	AATAAA	-33	NA	75490881	75490452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75490500_75490900
ES_00008623	chr11	-	2145	9	NNC	ENSMUSG00000020847.16	novel	2199	9	NA	NA	3	49545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.59545297913646	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAAGAACTCCTTG	NA	False	NA	NA	False	NA	NA	NA	75801885	75672279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_75672307_75721829_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775
ES_00008625	chr11	-	3527	3	FSM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	-20	5	-20	-5	multi-exon	FALSE	canonical	3	32	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCCCGGGAATGCGTT	7867	False	NA	NA	False	AATAAA	-12	NA	75918628	75910024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75913067_75915773_75915884_75918253
ES_00008626	chr11	-	2829	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	5	-1	-4	1	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATCCCTGAAGCTGGG	NA	False	NA	69	True	ATTAAA	-17	NA	76070468	75937050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
ES_00008627	chr11	-	3525	3	NNC	ENSMUSG00000049396.7	novel	3540	2	NA	NA	53	68185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.5	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAAGAATTCTGCCAT	NA	False	NA	NA	False	NA	NA	NA	76108437	76033211	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76033252_76101398_76104750_76108303
ES_00008629	chr11	-	645	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	4	1	0	-1	multi-exon	FALSE	canonical	3	20	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTTTATGTGTGTAT	NA	False	NA	-10	True	AATAAA	-15	NA	76070460	76067785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76068209_76070238
ES_00008630	chr11	-	3540	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76108490	76101396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76104750_76108303
ES_00008631	chr11	-	1434	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	76134551	76112335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ES_00008632	chr11	-	1358	9	FSM	ENSMUSG00000017286.16	ENSMUST00000170017.8	1195	9	-66	-97	8	0	multi-exon	FALSE	canonical	1	7	junction_7	244.869352921104	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	76134543	76112335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130331_76131698_76131749_76134380
ES_00008634	chr11	-	2755	8	FSM	ENSMUSG00000020844.7	ENSMUST00000021204.4	2755	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_7	17.5905818956785	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGAGTCCTTTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	76289966	76148023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76289526
ES_00008635	chr11	-	1711	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111707	-760	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1435	False	NA	-5	True	NA	NA	NA	76178187	76148783	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
ES_00008636	chr11	-	5401	23	FSM	ENSMUSG00000017631.20	ENSMUST00000072740.13	5394	23	0	-7	0	7	multi-exon	FALSE	canonical	3	154	junction_22	28.8783427101686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTTGTTTGTGTTCT	6119	False	NA	6	True	AATAAA	-43	NA	76462361	76307552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76461856
ES_00008637	chr11	-	6278	23	FSM	ENSMUSG00000017631.20	ENSMUST00000238684.2	6271	23	0	-7	0	7	multi-exon	FALSE	canonical	3	102	junction_22	37.5075749925023	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTTGTTTGTGTTCT	NA	False	NA	6	True	AATAAA	-43	NA	76514384	76307552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002
ES_00008638	chr11	-	4293	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	0	-4	0	4	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTGGTTATCTGTTCC	NA	False	NA	NA	False	AATAAA	-20	NA	76654405	76617423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ES_00008639	chr11	-	7952	21	FSM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	0	-6	0	6	multi-exon	FALSE	canonical	3	50	junction_17	8.89719056781409	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGTGTGTTGTCTCATA	NA	False	NA	0	True	TATAAA	-24	NA	76737844	76669243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76673237_76675212_76675313_76675844_76676031_76677096_76677229_76681652_76681718_76681820_76681917_76682689_76682822_76683561_76683698_76686266_76686463_76688406_76688731_76690614_76690785_76692465_76692609_76693057_76693161_76696801_76696912_76699535_76699704_76702520_76702713_76703207_76703558_76704308_76704479_76705596_76705740_76731213_76731462_76737049
ES_00008640	chr11	-	3116	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	3	-5	3	5	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGTAAATTTATTCAT	NA	False	NA	0	True	AATAAA	-33	NA	76969258	76935112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
ES_00008641	chr11	-	1875	7	NIC	ENSMUSG00000037958.14	novel	3114	7	NA	NA	-35	-1281	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	108.311279806553	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTTTTTCCTAATGTAT	NA	False	NA	NA	False	NA	NA	NA	76968898	76936398	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76968799
ES_00008646	chr11	-	1426	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	103	-13	intron_retention	FALSE	canonical	3	179	junction_5	7.1386273190299	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGAATTCGGAGTCGTTG	NA	False	NA	-12	True	ATTAAA	-8	NA	77404093	77398937	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
ES_00008648	chr11	-	12409	20	FSM	ENSMUSG00000017291.14	ENSMUST00000058496.8	12409	20	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_19	12.6460443488519	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTCACTTTATTTTT	8151	False	NA	2	True	AATAAA	-19	NA	77498641	77419987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77498033
ES_00008649	chr11	-	12592	22	NNC	ENSMUSG00000017291.14	novel	12409	20	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_21	16.9562595883946	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTCACTTTATTTTT	8118	False	NA	2	True	AATAAA	-19	NA	77498674	77419987	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77492524_77492588_77496377_77496465_77498033
ES_00008650	chr11	-	12551	21	NNC	ENSMUSG00000017291.14	novel	12409	20	NA	NA	-81	-2	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_19	10.1975487250613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCTGCTCACTTTATTT	8070	False	NA	0	True	AATAAA	-17	NA	77498722	77419989	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77492524_77492588_77498033
ES_00008651	chr11	-	227	1	Intergenic	novelGene_628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTATACTAGCTTCC	NA	False	NA	NA	False	NA	NA	NA	77647499	77647272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_77647300_77647500
ES_00008654	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ES_00008655	chr11	-	2131	9	FSM	ENSMUSG00000020832.15	ENSMUST00000139731.8	2131	9	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_7	16.6466025062173	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_77965001_77965105_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ES_00008657	chr11	-	398	2	Intergenic	novelGene_632	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAGACAAGTATTCAT	NA	False	NA	NA	False	NA	NA	NA	77984973	77972409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_77972612_77984777
ES_00008661	chr11	-	2882	14	FSM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	9.26148734971841	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6312	False	NA	0	True	AATAAA	-14	NA	78067437	78056931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
ES_00008663	chr11	-	506	2	FSM	ENSMUSG00000058546.9	ENSMUST00000144561.2	503	2	0	-3	0	0	multi-exon	FALSE	canonical	3	18853	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTGTCATTTGTCGC	7917	False	NA	-11	True	CATAAA	-4	NA	78072456	78071757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78072050_78072242
ES_00008664	chr11	-	563	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	0	-3	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	4556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTGTCATTTGTCGC	5963	False	NA	-11	True	CATAAA	-4	NA	78074410	78071757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
ES_00008665	chr11	-	1556	4	FSM	ENSMUSG00000058546.9	ENSMUST00000127270.2	588	4	-47	-921	-47	921	multi-exon	FALSE	canonical	3	10927	junction_1	3582.37128170713	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTAAGACGCCACCACCA	6423	False	NA	NA	False	NA	NA	NA	78073950	78070836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628
ES_00008668	chr11	-	1347	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	1698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
ES_00008669	chr11	-	1054	2	FSM	ENSMUSG00000051232.14	ENSMUST00000132433.2	1054	2	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTCCAGAGCTTATAT	4985	False	NA	NA	False	NA	NA	NA	78399644	78398077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78398632_78399144
ES_00008670	chr11	-	501	4	FSM	ENSMUSG00000051232.14	ENSMUST00000135946.8	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_3	27.8248490062789	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGCAGCTCTGAGGTAA	1758	False	NA	NA	False	NA	NA	NA	78402871	78399333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78399522_78400550_78400641_78401173_78401248_78402722
ES_00008672	chr11	-	3720	7	FSM	ENSMUSG00000017615.13	ENSMUST00000017759.9	3720	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_6	46.4997013132582	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCTGTTCCCTCCATG	NA	False	NA	14	True	NA	NA	NA	78427097	78413675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426898
ES_00008673	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	3	1037	junction_2	9	632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	False	NA	-7	True	AATAAA	-23	NA	78441603	78432642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78433623_78434311_78434457_78441353
ES_00008674	chr11	-	4542	11	FSM	ENSMUSG00000017376.16	ENSMUST00000142739.8	4444	11	-98	0	-98	0	multi-exon	TRUE	canonical	3	79	junction_6	8.57962703152066	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTCGCTGTCTTATTTCC	NA	False	NA	-1	True	ATTAAA	-19	NA	78588297	78457993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78459802_78462296_78462391_78463058_78463258_78465666_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
ES_00008675	chr11	-	395	1	FSM	ENSMUSG00000082110.2	ENSMUST00000119052.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCACATGAAAGACTGAAA	NA	False	NA	NA	False	NA	NA	NA	78476381	78475986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78476000_78476400
ES_00008676	chr11	-	1214	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	10	0	10	0	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTCTGCCTTATGGTA	6605	False	NA	-2	True	AATAAA	-37	NA	78642545	78641331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78641300_78642500
ES_00008677	chr11	-	1585	11	FSM	ENSMUSG00000001123.16	ENSMUST00000108269.10	1586	11	0	1	0	-1	multi-exon	FALSE	canonical	2	4	junction_6	7.48398289682706	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACATGTGAGATGGCTGG	NA	False	NA	-3	True	AATAAA	-23	NA	78875750	78853805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862142_78862254_78863813_78864016_78867438_78867528_78875603
ES_00008679	chr11	-	6602	18	NIC	ENSMUSG00000018334.19	novel	5495	19	NA	NA	-41	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	9.61328377369018	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGGAGACTCCTGTTTG	NA	False	NA	-7	True	AATAAA	-12	NA	79037274	78904267	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670_78936095_78938122_78938271_78965171_78965313_79036880
ES_00008680	chr11	-	5613	18	NIC	ENSMUSG00000018334.19	novel	5495	19	NA	NA	-123	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_14	9.7916001003897	156	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGACTCCTGTTTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	79037356	78904265	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_78907090_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670_78936095_78938122_78938271_78965171_78965313_79036880
ES_00008681	chr11	-	3179	8	NNC	ENSMUSG00000017677.12	novel	1260	8	NA	NA	0	13038	intron_retention	FALSE	non_canonical	0	0	junction_1	174.41938667757	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACTTACATATAATAAATAA	6987	False	NA	NA	False	NA	NA	NA	79139485	79117159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79117308_79130573_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216
ES_00008683	chr11	-	2472	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	0	4	0	-4	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTTCTTTCATGGGTTG	975	False	NA	-12	True	ATTAAA	-24	NA	79145497	79130201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ES_00008684	chr11	-	3789	20	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-46	37961	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	111.483896952781	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCATGAGTTCAATTCCCA	NA	False	NA	NA	False	NA	NA	NA	79853262	79785185	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79785213_79824939_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ES_00008685	chr11	-	3893	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	0	-16	0	16	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTTTGTCGTTCATT	NA	False	NA	2	True	NA	NA	NA	79853216	79824762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ES_00008687	chr11	-	703	4	FSM	ENSMUSG00000035575.12	ENSMUST00000146127.2	559	4	-69	-75	-46	75	multi-exon	FALSE	canonical	3	451	junction_1	32.1074584619974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGGCATGGTGATACAAA	NA	False	NA	NA	False	ATTAAA	-19	NA	79853262	79849347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_79849705_79849934_79849977_79851572_79851658_79853043
ES_00008688	chr11	-	2827	3	Intergenic	novelGene_645	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	2.5	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCAGCCCCTAAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	79867117	79863149	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_79863780_79864424_79866420_79866915
ES_00008689	chr11	-	2408	3	Intergenic	novelGene_644	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	31	junction_1	36.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTTTTCTTTAAACAGA	NA	False	NA	NA	False	NA	NA	NA	79867143	79863137	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_79863780_79864424_79865963_79866915
ES_00008690	chr11	-	2289	9	NNC	ENSMUSG00000017561.17	novel	2396	8	NA	NA	0	58750	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	236.778245411186	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTCTATCTTCTCAGAG	4618	False	NA	NA	False	AATAAA	-45	NA	79971687	79878568	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79878597_79937323_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
ES_00008691	chr11	-	233	2	Intergenic	novelGene_646	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	659	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CATTCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	79880073	79878605	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_79878775_79880009
ES_00008692	chr11	-	261	1	Intergenic	novelGene_647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAGAAGCAAGCAAACA	NA	False	NA	NA	False	NA	NA	NA	79880063	79879802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_79879800_79880100
ES_00008694	chr11	-	2421	9	NNC	ENSMUSG00000017561.17	novel	2396	8	NA	NA	0	56218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	263.998934656941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGACACTATATCAAGAA	4488	False	NA	NA	False	NA	NA	NA	79971817	79881100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79881135_79937323_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971613
ES_00008695	chr11	-	2532	9	NNC	ENSMUSG00000017561.17	novel	2396	8	NA	NA	-107	56218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	236.778245411186	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGACACTATATCAAGAA	4381	False	NA	NA	False	NA	NA	NA	79971924	79881100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79881135_79937323_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
ES_00008696	chr11	-	2232	7	FSM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_1	206.037820152838	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGGTTTTTTGTGA	4541	False	NA	-1	True	AATAAA	-22	NA	79971764	79937316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_79938564_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
ES_00008697	chr11	-	2391	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	0	5	0	-5	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATGTATTTTGTGGTTT	4488	False	NA	-8	True	AATAAA	-15	NA	79971817	79937323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
ES_00008698	chr11	-	209	2	NNC	ENSMUSG00000017561.17	novel	1871	2	NA	NA	-49847	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTCTTGGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	80021664	79953476	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79953511_80021489
ES_00008701	chr11	-	1314	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	0	-5	0	5	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTTTGCTTAAGTTCT	NA	False	NA	1	True	AATAAA	-19	NA	80033001	80027498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
ES_00008702	chr11	-	1514	4	NIC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	13	3	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	108.206592528675	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTCTTTGCTTAAGTT	NA	False	NA	-1	True	AATAAA	-17	NA	80032956	80027500	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_80028106_80028743_80028894_80030691_80031397_80032902
ES_00008703	chr11	-	571	2	Intergenic	novelGene_651	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTTAAAAAAAAAAA	6828	False	NA	NA	False	NA	NA	NA	80056590	80040058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_80040173_80056133
ES_00008705	chr11	-	1618	2	Antisense	novelGene_ENSMUSG00000020709.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGGTTTTTGGTTTGTT	9742	False	NA	NA	False	NA	NA	NA	80071449	80069657	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_80071062_80071235
ES_00008706	chr11	-	4540	10	FSM	ENSMUSG00000057181.16	ENSMUST00000103225.11	4554	10	15	-1	-4	0	multi-exon	FALSE	canonical	2	53	junction_6	17.0105268787113	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGCTTAAATAGTGTT	NA	False	NA	NA	False	TTTAAA	-4	NA	80268845	80251317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
ES_00008707	chr11	-	220	2	NNC	ENSMUSG00000057181.16	novel	478	3	NA	NA	-48594	2082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATTTCTGAAGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	80317454	80259161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_80259193_80317265
ES_00008708	chr11	-	712	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	-26	0	-26	0	multi-exon	FALSE	canonical	2	4	junction_1	9	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671894	82670426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82670762_82670960_82671125_82671681
ES_00008709	chr11	-	906	2	FSM	ENSMUSG00000085175.8	ENSMUST00000136051.2	655	2	-21	-230	-21	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671889	82670426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82671125_82671681
ES_00008710	chr11	-	3489	7	FSM	ENSMUSG00000020696.19	ENSMUST00000108173.10	3489	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_4	36.5942466637706	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2743	False	NA	NA	False	AATAAA	-11	NA	82762036	82694647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82761833
ES_00008711	chr11	-	1733	8	NNC	ENSMUSG00000020696.19	novel	3633	8	NA	NA	51	-1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	64.8930045599395	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGTGTGTTAATGTAT	2794	False	NA	-9	True	TTTAAA	-17	NA	82761985	82696433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82755078_82755160_82761833
ES_00008712	chr11	-	3387	6	NIC	ENSMUSG00000020696.19	novel	3489	7	NA	NA	12	-6	combination_of_known_junctions	FALSE	canonical	3	66	junction_3	39.9769933836951	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGATGCCTGTCCCA	2755	False	NA	NA	False	AATAAA	-5	NA	82762024	82694653	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82703225_82703637_82709241_82709430_82761833
ES_00008713	chr11	-	655	3	FSM	ENSMUSG00000020696.19	ENSMUST00000126660.2	671	3	16	0	16	0	multi-exon	FALSE	canonical	3	25	junction_2	66.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGAGGGACTATCTCAGC	NA	False	NA	NA	False	NA	NA	NA	82736902	82703494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82703637_82709241_82709430_82736577
ES_00008714	chr11	-	3753	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	25	-352	0	87	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTACTCATCGCTGAGAA	NA	False	NA	NA	False	NA	NA	NA	82781415	82767172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ES_00008718	chr11	-	543	2	FSM	ENSMUSG00000020692.15	ENSMUST00000124109.2	539	2	0	-4	0	0	multi-exon	FALSE	canonical	3	238	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	NA	False	NA	-6	True	AATAAA	-22	NA	82792642	82791593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82791877_82792382
ES_00008720	chr11	-	5733	5	Fusion	ENSMUSG00000069793.13_ENSMUSG00000035208.17	novel	5769	5	NA	NA	-13	-2	multi-exon	FALSE	canonical	3	36	junction_4	3.64005494464026	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTGAATTTGTCTTTA	NA	False	NA	-8	True	NA	NA	NA	82910947	82869217	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82910738
ES_00008721	chr11	-	2128	5	FSM	ENSMUSG00000069793.13	ENSMUST00000138797.2	2128	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	14.1133801762724	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATCTGCCAGGCAG	8620	False	NA	NA	False	NA	NA	NA	82881963	82872809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82881767
ES_00008723	chr11	-	3282	3	FSM	ENSMUSG00000018733.11	ENSMUST00000176518.2	2501	3	-340	-441	-260	7	multi-exon	FALSE	canonical	3	48	junction_2	7.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGTTAATTAAAAACACT	2131	False	NA	NA	False	AATAAA	-21	NA	83190063	83185460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_83187267_83188313_83188868_83189141
ES_00008724	chr11	-	2392	4	FSM	ENSMUSG00000018733.11	ENSMUST00000108146.8	2389	4	0	-3	0	3	multi-exon	FALSE	canonical	3	23	junction_3	16.4991582276861	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTTCTTGAAGTTTTTC	2426	False	NA	-4	True	AATAAA	-19	NA	83189768	83185897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189537
ES_00008726	chr11	-	911	3	Intergenic	novelGene_664	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	50	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCATTCATTGGTTTAG	4765	False	NA	9	True	AATAAA	-40	NA	83458244	83454461	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_83455094_83457579_83457647_83458032
ES_00008727	chr11	-	4583	4	FSM	ENSMUSG00000019122.9	ENSMUST00000019266.6	3006	4	-1576	-1	-1576	1	multi-exon	FALSE	canonical	3	19	junction_3	22.5141930543577	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGTTGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	83471038	83463743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_83466322_83466668_83466778_83467200_83467273_83469214
ES_00008728	chr11	-	1091	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3706	662	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGCCTCTTTTGCTT	NA	False	NA	3	True	AATAAA	-22	NA	83473168	83465481	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
ES_00008729	chr11	-	1219	5	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3699	661	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	25.1445819213603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGCCTCTTTTGCT	NA	False	NA	2	True	AATAAA	-21	NA	83473161	83465482	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83469214_83469351_83473098
ES_00008730	chr11	-	1453	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	0	-6	0	6	multi-exon	FALSE	canonical	3	59	junction_2	13.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAATCATTTTGGGTGTG	NA	False	NA	-8	True	AATAAA	-21	NA	83959183	83938860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_83940137_83941657_83941747_83959095
ES_00008732	chr11	-	2151	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	-4	True	ATTAAA	-17	NA	84020426	83969745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
ES_00008736	chr11	-	1992	9	FSM	ENSMUSG00000018697.15	ENSMUST00000148434.2	1992	9	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_4	26.8348537353942	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84404348	84357730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ES_00008738	chr11	-	1254	7	FSM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	7.19760762722973	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCCCCCCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	84719790	84711681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719576
ES_00008740	chr11	-	3028	14	NIC	ENSMUSG00000020530.15	novel	3034	14	NA	NA	0	85	combination_of_known_junctions	FALSE	canonical	3	41	junction_13	144.390291269939	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGAAGACAGAGTG	NA	False	NA	85	True	NA	NA	NA	84761615	84723101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761515
ES_00008741	chr11	-	2969	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	546	0	10	0	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761018	84723186	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ES_00008742	chr11	-	2898	14	NNC	ENSMUSG00000020530.15	novel	2950	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_13	137.500511026484	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761548	84723186	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761499
ES_00008743	chr11	-	2948	14	NIC	ENSMUSG00000020530.15	novel	3034	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_13	140.403560365518	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761614	84723186	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761515
ES_00008744	chr11	-	3745	14	FSM	ENSMUSG00000020530.15	ENSMUST00000108081.9	3034	14	0	-711	0	711	multi-exon	FALSE	canonical	3	67	junction_13	134.623999724325	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTTTTTGTTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	84761615	84722475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ES_00008745	chr11	-	3056	14	FSM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	138.817874810357	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761643	84723186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ES_00008746	chr11	-	2528	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGCCTATGATTTAAG	NA	False	NA	NA	False	NA	NA	NA	84761028	84723631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ES_00008747	chr11	-	923	5	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	32	2790	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	230.740519848595	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGTTAAATATCTCAG	NA	False	NA	-30	True	AATAAA	-15	NA	84760996	84748754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ES_00008748	chr11	-	2253	2	FSM	ENSMUSG00000045140.9	ENSMUST00000108080.3	1728	2	3	-528	3	0	multi-exon	FALSE	canonical	3	12	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATTTTGTCTGCATGTA	NA	False	NA	6	True	TTTAAA	-15	NA	84771108	84767140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84769339_84771053
ES_00008749	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ES_00008750	chr11	-	1100	5	FSM	ENSMUSG00000020526.13	ENSMUST00000144552.8	738	5	-21	-341	-4	0	multi-exon	FALSE	canonical	2	2	junction_3	166.285146660789	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807196	84801775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84802475_84804047_84804129_84805036_84805210_84806924_84806957_84807081
ES_00008751	chr11	-	6990	34	FSM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	66	-3	-4	3	multi-exon	FALSE	canonical	3	28	junction_26	11.8228429036788	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTTTGTGATCCTGTT	7551	False	NA	-11	True	AGTAAA	-25	NA	85030798	84875264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927347_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
ES_00008752	chr11	-	664	2	FSM	ENSMUSG00000000804.15	ENSMUST00000173156.2	664	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAGCAGTCAACTTTAA	765	False	NA	NA	False	AATAAA	-10	NA	84879509	84877095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84877410_84879159
ES_00008753	chr11	-	998	1	FSM	ENSMUSG00000082806.2	ENSMUST00000121801.2	668	1	-52	-278	-52	278	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGCCCAAACTTACCA	NA	False	NA	NA	False	NA	NA	NA	85002671	85001673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_85001700_85002700
ES_00008754	chr11	-	6479	14	NNC	ENSMUSG00000018481.10	novel	6463	13	NA	NA	0	322	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.15029538324	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCTGTGCTGCAGAGGC	NA	False	NA	NA	False	AAAAAG	-5	NA	85125956	85077765	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_85077793_85078098_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
ES_00008755	chr11	-	6463	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_12	22.6180544894756	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCCGATTGAATTGTGA	NA	False	NA	0	True	AATAAA	-25	NA	85125956	85078087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
ES_00008756	chr11	-	6933	20	FSM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	6	-8	6	8	multi-exon	FALSE	canonical	3	63	junction_1	12.1006856333757	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCGATGACTTATCTACAT	NA	False	NA	NA	False	AATAAA	-22	NA	86092013	85948955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
ES_00008762	chr11	-	4631	26	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	-56	-25	intron_retention	FALSE	canonical	3	33	junction_24	49.1211726244397	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86148457	86102938	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029
ES_00008766	chr11	-	12043	30	FSM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	-729	-768	-729	768	multi-exon	TRUE	canonical	3	30	junction_26	15.4932381399703	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTCATTGGTAGAGCAC	8427	False	NA	NA	False	NA	NA	NA	86249157	86157090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938_86176159_86177259_86177717_86178916_86179107_86179758_86179983_86181868_86182031_86189105_86190023_86191475_86191673_86191955_86192171_86192290_86192382_86194359_86194482_86197809_86197889_86199524_86199739_86210173_86210858_86218627_86218739_86219272_86219436_86219993_86220189_86221813_86222012_86222708_86222855_86236685_86236855_86246099_86246335_86248285
ES_00008769	chr11	-	1729	14	NNC	ENSMUSG00000020516.16	novel	3250	10	NA	NA	-13	-3162	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	66.844958827948	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGCTGTATCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	86435613	86396586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_86397008_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ES_00008772	chr11	-	2769	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	0	18	0	-18	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAATGAAAAGTCAC	9872	False	NA	NA	False	ACTAAA	-2	NA	86574662	86474708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
ES_00008773	chr11	-	931	2	FSM	ENSMUSG00000018171.10	ENSMUST00000145846.2	931	2	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAGTATGTTAAATATGT	7436	False	NA	NA	False	NA	NA	NA	86477820	86475845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86476278_86477321
ES_00008774	chr11	-	599	1	FSM	ENSMUSG00000083992.2	ENSMUST00000117851.2	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	86521852	86521253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86521300_86521900
ES_00008778	chr11	-	3813	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACAGTATGTGGATTTTT	8527	False	NA	-8	True	ATTAAA	-7	NA	86698572	86659671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
ES_00008779	chr11	-	4862	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	0	-15	0	15	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTCTTTTGATGCTGT	NA	False	NA	7	True	AATAAA	-31	NA	86884533	86827235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
ES_00008780	chr11	-	2336	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGATTCCAGTGTGT	NA	False	NA	-8	True	AATAAA	-39	NA	86964888	86924692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
ES_00008782	chr11	-	3827	10	FSM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	0	-3	0	3	multi-exon	FALSE	canonical	3	68	junction_6	5.79484658240235	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGAGTTCATGTTGCTT	NA	False	NA	-10	True	ATTAAA	-19	NA	86999534	86979975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
ES_00008784	chr11	-	3537	11	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	-47956	-518	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	60.6060228030185	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTATACATCTTTC	NA	False	NA	NA	False	NA	NA	NA	87343736	87267988	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129_87295273_87343341_87343484_87343690
ES_00008790	chr11	-	619	2	NNC	ENSMUSG00000086193.2	novel	440	2	NA	NA	16149	-6	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAATGAGAATGTAAGTT	NA	False	NA	NA	False	AATAAA	-11	NA	87922683	87902822	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_87903159_87922400
ES_00008794	chr11	-	3758	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88755412	88721617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ES_00008796	chr11	-	2097	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	0	0	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ES_00008797	chr11	-	1047	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	0	-228	0	228	multi-exon	FALSE	canonical	3	61	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTACCACCTGGAG	6819	False	NA	NA	False	NA	NA	NA	88857743	88855255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_88856100_88857540
ES_00008798	chr11	-	741	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	-20	-140	-20	140	multi-exon	FALSE	canonical	3	19	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTTAAAAAAAGATCAG	9019	False	NA	NA	False	NA	NA	NA	88887390	88883725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_88884304_88887227
ES_00008799	chr11	-	5208	11	FSM	ENSMUSG00000000276.12	ENSMUST00000000285.9	5208	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	10.9859000541603	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCTTTTTTTTTTTT	3832	False	NA	NA	False	NA	NA	NA	88951574	88928407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_88931738_88932273_88932386_88932987_88933116_88935065_88935138_88939714_88939829_88940674_88940727_88941144_88941303_88941494_88941639_88943252_88943373_88946183_88946344_88950756
ES_00008802	chr11	-	5985	18	FSM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_15	2.25532817796245	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTAGATTTTCTTT	NA	False	NA	NA	False	AGTAAA	-32	NA	90528910	90367317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_90371541_90385427_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
ES_00008803	chr11	-	4274	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	0	34	0	-34	multi-exon	FALSE	canonical	3	215	junction_9	19.1849478034792	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTGCTTATGTCAATA	NA	False	NA	NA	False	NA	NA	NA	90578433	90534324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
ES_00008804	chr11	-	2094	16	FSM	ENSMUSG00000020541.13	ENSMUST00000107868.8	2093	16	0	-1	0	0	multi-exon	FALSE	canonical	2	5	junction_14	62.6969430408426	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTGTTGTTTTGTCT	NA	False	NA	-1	True	ATTAAA	-18	NA	90578427	90536515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574157_90575887_90575973_90578338
ES_00008805	chr11	-	2613	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	0	0	0	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCTTTGATCAAACT	NA	False	NA	NA	False	AAGAAA	-4	NA	93776592	93750068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ES_00008806	chr11	-	665	2	FSM	ENSMUSG00000054079.13	ENSMUST00000134807.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTAATTAATTGATTTT	NA	False	NA	NA	False	NA	NA	NA	93766969	93766208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_93766785_93766880
ES_00008808	chr11	-	1100	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	-88	0	-88	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	False	NA	-28	True	NA	NA	NA	93847173	93840639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
ES_00008809	chr11	-	734	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846609	93840642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
ES_00008811	chr11	-	3091	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	194	-104	-55	104	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCACCTGAAGTGTGTG	579	False	NA	NA	False	NA	NA	NA	93859153	93847700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ES_00008812	chr11	-	523	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	-51	-61	-51	61	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAACAAAATA	NA	False	NA	NA	False	NA	NA	NA	93928505	93927982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_93928000_93928500
ES_00008813	chr11	-	5244	12	FSM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	82.4268270539502	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTGGTGTAGGTAGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	94212784	94178715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94182405_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ES_00008814	chr11	-	6621	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	1	-3249	1	0	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTGGTGTAGGTAGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	94212813	94178715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ES_00008815	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94212814	94181886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ES_00008816	chr11	-	6697	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	30	-3249	0	0	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTGGTGTAGGTAGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	94212784	94178715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ES_00008817	chr11	-	1906	11	NNC	ENSMUSG00000020863.16	novel	2050	11	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_3	75.0215968904955	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212751	94181964	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_94182405_94183910_94184105_94186745_94186904_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ES_00008818	chr11	-	1161	3	FSM	ENSMUSG00000020865.17	ENSMUST00000140985.2	567	3	-141	-453	-141	93	multi-exon	FALSE	canonical	3	83	junction_1	6	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGGCTGCTGTTAT	794	False	NA	89	True	NA	NA	NA	94242153	94234027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94234602_94236772_94236968_94241761
ES_00008819	chr11	-	3383	17	NIC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	3481	93	intron_retention	FALSE	canonical	1	2	junction_8	30.3587276372051	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGGCTGCTGTTAT	NA	False	NA	89	True	NA	NA	NA	94255268	94234027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577_94249889_94250066_94250275_94250352_94250501_94250654_94250770_94251997_94252176_94252475_94252644_94254258_94254436_94254522_94254650_94254867_94254935_94255177
ES_00008821	chr11	-	3160	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	0	-6	0	6	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGACTGTAACTCACATAC	7285	False	NA	2	True	AATAAA	-25	NA	94492697	94447921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
ES_00008823	chr11	-	569	2	FSM	ENSMUSG00000039055.5	ENSMUST00000128447.2	569	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAAGATTCCCGATGTTC	4696	False	NA	NA	False	NA	NA	NA	94544497	94541401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94541850_94544376
ES_00008824	chr11	-	3431	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	11	0	11	0	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	1054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAATGTCCTTGTTTGCT	2216	False	NA	-6	True	AATATA	-16	NA	94568330	94554676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
ES_00008826	chr11	-	2724	5	NNC	ENSMUSG00000075611.6	novel	375	3	NA	NA	-3444	1846	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	1.58113883008419	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTTTCTCTGTATG	1899	False	NA	NA	False	AATAAA	-26	NA	94652033	94645955	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_94647982_94648187_94648387_94648522_94648622_94649100_94649124_94651656
ES_00008827	chr11	-	2246	11	FSM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.12290780593665	487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGGCTTCCTTGC	6074	False	NA	-1	True	NA	NA	NA	94932180	94917083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
ES_00008830	chr11	-	2199	5	FSM	ENSMUSG00000038909.17	ENSMUST00000138671.2	1003	5	-132	-1064	-132	0	multi-exon	FALSE	canonical	3	152	junction_1	336.853454784124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95172852	95165084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664
ES_00008831	chr11	-	3324	14	FSM	ENSMUSG00000038909.17	ENSMUST00000072621.12	3324	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	277.302283100983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
ES_00008833	chr11	-	3470	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ES_00008834	chr11	-	2093	2	FSM	ENSMUSG00000046719.8	ENSMUST00000058866.8	2099	2	0	6	0	-6	multi-exon	FALSE	canonical	2	2	junction_1	0	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTATTCTATTCTAAGTA	NA	False	NA	-5	True	AATAAA	-14	NA	95405396	95400676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95402359_95404985
ES_00008835	chr11	-	2434	7	NNC	ENSMUSG00000000120.7	novel	3446	6	NA	NA	16	40868	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.1462090662152	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACGCACACGTTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	95478545	95418775	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95418812_95460675_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
ES_00008836	chr11	-	3436	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	16	-6	16	6	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCCAAGAGAATTTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	95478545	95459637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
ES_00008839	chr11	-	4464	11	FSM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	-255	-2487	-255	2487	multi-exon	FALSE	canonical	3	16	junction_4	6.67907179179862	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGTCTCTGAGCACAAA	2635	False	NA	NA	False	NA	NA	NA	95805972	95754281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
ES_00008840	chr11	-	235	2	Antisense	novelGene_ENSMUSG00000088854.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTAAACAACTCCTGCAA	8692	False	NA	NA	False	NA	NA	NA	95823120	95760477	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_95760507_95822914
ES_00008843	chr11	-	8414	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	27524	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.294467597297	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGAGTTGCCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	95896766	95820464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95820504_95847988_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00008844	chr11	-	8688	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-271	27524	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.865819431275	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGAGTTGCCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	95897037	95820464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95820504_95847988_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00008846	chr11	-	7967	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-25	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTGTGTCTGTGC	NA	False	NA	-8	True	AATAAA	-16	NA	95873462	95847991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ES_00008847	chr11	-	8378	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGAGTGTGTCTGTGCTTC	NA	False	NA	-5	True	AATAAA	-19	NA	95896766	95847988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00008850	chr11	-	602	1	FSM	ENSMUSG00000103376.2	ENSMUST00000194862.2	823	1	148	73	148	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTCGCTAGCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	95897833	95897231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95897200_95897800
ES_00008851	chr11	-	3997	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	37.418429802557	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTTGGAATGAACTTTT	5467	False	NA	NA	False	AATAAA	-19	NA	95956214	95938257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
ES_00008852	chr11	-	4659	4	FSM	ENSMUSG00000006057.16	ENSMUST00000178611.8	4660	4	0	1	0	-1	multi-exon	FALSE	canonical	3	9053	junction_3	812.300437030536	2182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGCTTTAAAATATC	4112	False	NA	NA	False	NA	NA	NA	95965863	95959693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812
ES_00008853	chr11	-	4699	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	0	16	0	-1	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGCTTTAAAATATC	3479	False	NA	NA	False	NA	NA	NA	95966496	95959693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
ES_00008854	chr11	-	692	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107686.8	691	5	0	-1	0	1	multi-exon	FALSE	canonical	3	143	junction_4	4410.8346149	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	3568	False	NA	-5	True	NA	NA	NA	95966407	95963811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966252
ES_00008855	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3530	False	NA	-9	True	NA	NA	NA	95966445	95963815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
ES_00008856	chr11	-	5269	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	0	-3648	0	3648	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAGTGTCTTGACCTTC	4211	False	NA	NA	False	NA	NA	NA	96002790	95986503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
ES_00008858	chr11	-	2197	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668385	96658702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
ES_00008860	chr11	-	3563	5	NNC	ENSMUSG00000038615.18	novel	486	4	NA	NA	0	21380	intron_retention	FALSE	non_canonical	0	0	junction_1	600.382534306254	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCAGGAGCTAGGCGTA	NA	False	NA	NA	False	NA	NA	NA	96714834	96686859	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_96686885_96708243_96711343_96712076_96712236_96712929_96713146_96714770
ES_00008863	chr11	-	5232	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	5	-1690	0	1690	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTCGAAACCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	96714834	96706549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
ES_00008864	chr11	-	4596	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720328	96708239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
ES_00008865	chr11	-	4654	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720794	96708239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
ES_00008869	chr11	-	1207	2	FSM	ENSMUSG00000018669.15	ENSMUST00000149033.2	1207	2	0	0	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGAGCGAGGCTCGG	NA	False	NA	NA	False	NA	NA	NA	96803695	96802281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96802836_96803042
ES_00008871	chr11	-	768	6	FSM	ENSMUSG00000018669.15	ENSMUST00000127048.8	768	6	0	0	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	85.042577571473	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCAGGGGCTCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	96807218	96802770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
ES_00008874	chr11	-	220	2	NNC	ENSMUSG00000085307.2	novel	2804	2	NA	NA	-28382	-3081	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAGAAGTTTATGATCTG	NA	False	NA	NA	False	NA	NA	NA	96841701	96812847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_96813036_96841669
ES_00008877	chr11	-	3032	7	NIC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	24	4	combination_of_known_splicesites	FALSE	canonical	3	301	junction_6	68.1854089963535	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCGTTTGGCAGTTGGG	NA	False	NA	-13	True	AATAAA	-20	NA	96868513	96844162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854268_96868446
ES_00008878	chr11	-	3064	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	-9	0	9	multi-exon	FALSE	canonical	3	58	junction_6	154.880599172395	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGGCAGTTGGGCTTCC	NA	False	NA	-8	True	AATAAA	-25	NA	96868537	96844157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854271_96868446
ES_00008881	chr11	-	3398	9	FSM	ENSMUSG00000038517.16	ENSMUST00000107615.8	3333	9	-65	0	-65	0	multi-exon	FALSE	canonical	3	24	junction_5	12.8160056179763	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCGCTCAGGCTGTGC	7802	False	NA	-2	True	AATAAA	-17	NA	97040603	97026998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187
ES_00008882	chr11	-	3340	9	FSM	ENSMUSG00000038517.16	ENSMUST00000066078.12	3338	9	-2	0	-2	0	multi-exon	FALSE	canonical	3	33	junction_5	10.7579912158358	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGCTCAGGCTGTGCTT	7865	False	NA	0	True	AATAAA	-19	NA	97040540	97026996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187
ES_00008883	chr11	-	3294	10	FSM	ENSMUSG00000038517.16	ENSMUST00000118375.8	3288	10	0	-6	0	0	multi-exon	FALSE	canonical	3	15	junction_9	16.2343942158479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGCTCAGGCTGTGCTT	7533	False	NA	0	True	AATAAA	-19	NA	97040872	97026996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97040816
ES_00008884	chr11	-	4248	9	NIC	ENSMUSG00000038517.16	novel	2391	10	NA	NA	57	-2	intron_retention	FALSE	canonical	3	24	junction_8	13.3603892158874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCGCTCAGGCTGT	6141	False	NA	-4	True	AATAAA	-15	NA	97042264	97027000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
ES_00008885	chr11	-	3334	10	FSM	ENSMUSG00000038517.16	ENSMUST00000107614.8	2391	10	-17	-926	-17	0	multi-exon	FALSE	canonical	2	9	junction_9	16.5529453572468	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCGCTCAGGCTGTGC	6526	False	NA	-2	True	AATAAA	-17	NA	97041879	97026998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97041784
ES_00008891	chr11	-	231	2	Intergenic	novelGene_715	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATAGTTCTTGACAGGGC	6574	False	NA	NA	False	NA	NA	NA	97233140	97202742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_97202945_97233111
ES_00008894	chr11	-	2628	11	NIC	ENSMUSG00000018537.17	novel	1755	13	NA	NA	-45	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_10	69.6100567446975	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGCCTGTGGTTCTTTGG	NA	False	NA	-5	True	AATAAA	-15	NA	97591368	97579650	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361_97590475_97591085
ES_00008895	chr11	-	1438	11	FSM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	75.0416550990182	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590467	97580645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031_97590127_97590361
ES_00008896	chr11	-	2662	10	ISM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	10	-999	10	2	intron_retention	FALSE	canonical	3	57	junction_9	50.8265022732564	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTTTGGGACA	NA	False	NA	-1	True	AATAAA	-19	NA	97590457	97579646	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031
ES_00008898	chr11	-	5107	10	FSM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	-54	0	-54	0	multi-exon	FALSE	canonical	3	13	junction_3	2.70801280154532	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATGTGAGTCCTTTG	NA	False	NA	-5	True	AATAAA	-22	NA	97635584	97605982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97609766_97610555_97610660_97611048_97611308_97613187_97613302_97613765_97613805_97615204_97615352_97617530_97617684_97620379_97620477_97623483_97623582_97635271
ES_00008899	chr11	-	3226	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	16	-137	0	3	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTTGGAGCAAGAATGAAA	7451	False	NA	2	True	AATAAA	-23	NA	97657366	97636303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
ES_00008900	chr11	-	1066	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	0	-7	0	7	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	2170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGCTTGAGAACGACCT	NA	False	NA	-2	True	AATAAA	-24	NA	97673263	97668345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
ES_00008901	chr11	-	814	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	-86	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673188	97668863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
ES_00008902	chr11	-	658	2	FSM	ENSMUSG00000071415.7	ENSMUST00000151965.2	658	2	0	0	0	0	multi-exon	FALSE	canonical	3	14449	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGCAAACCAGAACTAAG	NA	False	NA	NA	False	NA	NA	NA	97673188	97672187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97672289_97672631
ES_00008904	chr11	-	562	2	NNC	ENSMUSG00000017417.15	novel	2881	14	NA	NA	0	-5916	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCAGATTCCTCACAAT	6860	False	NA	NA	False	AATAAA	-19	NA	97877270	97874997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_97875353_97877063
ES_00008905	chr11	-	1748	13	FSM	ENSMUSG00000020882.18	ENSMUST00000107562.2	1745	13	0	-3	0	3	multi-exon	FALSE	canonical	3	23	junction_7	26.3358384884341	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGTCTGTGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	97913460	97895747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ES_00008906	chr11	-	1883	13	FSM	ENSMUSG00000020882.18	ENSMUST00000092736.11	1880	13	0	-3	0	3	multi-exon	FALSE	canonical	3	20	junction_6	26.3832596335041	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGTCTGTGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	97913460	97895747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ES_00008907	chr11	-	1294	9	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	-452	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	25.6855990780826	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97903829	97895750	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637
ES_00008908	chr11	-	2832	12	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	9	2	intron_retention	FALSE	canonical	3	28	junction_6	21.5379733847143	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGGTGTCTGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	97913444	97895748	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ES_00008909	chr11	-	3025	11	FSM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	27	-2	27	2	multi-exon	FALSE	canonical	3	31	junction_9	5.98748695196908	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGCTTGGTGTATCTG	5386	False	NA	0	True	ATTAAA	-17	NA	97944261	97927446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97928897_97930444_97930583_97930923_97930976_97931247_97931346_97931964_97932027_97932129_97932203_97932292_97932406_97933354_97933446_97933582_97933681_97934305_97934613_97943718
ES_00008911	chr11	-	2463	15	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-6	2400	combination_of_known_junctions	TRUE	canonical	3	15	junction_14	36.7548414137095	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACCCTGCCTGAATCTT	2368	False	NA	-3	True	AATAAA	-29	NA	98041235	97979516	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
ES_00008914	chr11	-	8045	17	FSM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	0	-21	0	20	multi-exon	FALSE	canonical	3	176	junction_3	32.1266414950271	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTGTTTTGTTTTTT	NA	False	NA	NA	False	AATAAA	-40	NA	98084119	98042959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ES_00008915	chr11	-	2805	18	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	56.1624559050546	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	AATAAA	-42	NA	98084102	98042979	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98043952_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ES_00008916	chr11	-	1387	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	-15	0	15	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGCAACTCTTTGTT	NA	False	NA	NA	False	AATAAA	-30	NA	98084102	98060721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ES_00008917	chr11	-	2419	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTCTGCTACTCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	98291316	98279502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
ES_00008919	chr11	-	2078	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	105	1	105	-1	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	1564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTGGCCTCTGCTTCCT	1428	False	NA	0	True	AATAAA	-22	NA	98478089	98472082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ES_00008921	chr11	-	3403	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	7	0	7	0	multi-exon	FALSE	canonical	3	102	junction_19	25.7353919729232	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620254	98595416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
ES_00008923	chr11	-	3389	26	NIC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	23	2	combination_of_known_junctions	TRUE	canonical	1	3	junction_25	38.4503003889436	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGGGGACAGTTTC	NA	False	NA	0	True	AATAAA	-25	NA	98620170	98595414	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620129
ES_00008925	chr11	-	2721	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	0	True	NA	NA	NA	98666159	98658757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
ES_00008927	chr11	-	5215	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	633	junction_4	229.626625065073	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTTTAACCCATCTGA	NA	False	NA	8	True	AATAAA	-30	NA	98915004	98883760	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00008928	chr11	-	5113	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	289.08507892512	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCCATTCCTCTTAT	NA	False	NA	-6	True	AATAAA	-16	NA	98915004	98883774	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00008929	chr11	-	5116	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	255.273980064477	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCCATTCCTCTTAT	NA	False	NA	-6	True	AATAAA	-16	NA	98915004	98883774	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00008930	chr11	-	5226	36	FSM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	0	-5	0	5	multi-exon	FALSE	canonical	3	1094	junction_4	183.786113485769	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTTATTTTAACCCATC	NA	False	NA	5	True	AATAAA	-27	NA	98915015	98883763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00008931	chr11	-	803	5	FSM	ENSMUSG00000020914.18	ENSMUST00000154332.8	803	5	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	602.028238540353	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTGTGCTGTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	98886550	98883896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886202_98886506
ES_00008932	chr11	-	5565	35	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	5	intron_retention	FALSE	canonical	3	1094	junction_3	172.605656925746	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTTATTTTAACCCATC	NA	False	NA	5	True	AATAAA	-27	NA	98915004	98883763	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00008935	chr11	-	2921	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	0	-2	0	2	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGTGTTTTTATTGCAC	NA	False	NA	0	True	AATAAA	-17	NA	99121843	99099870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ES_00008937	chr11	-	636	4	FSM	ENSMUSG00000035849.15	ENSMUST00000154622.2	757	4	121	0	121	0	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCCCACCAGGAACCAA	2952	False	NA	NA	False	NA	NA	NA	99129580	99125768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_99125974_99126962_99127096_99127290_99127368_99129359
ES_00008938	chr11	-	546	2	ISM	ENSMUSG00000019761.11	ENSMUST00000103131.5	2094	8	3271	0	4	0	3prime_fragment	FALSE	canonical	3	82	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCAGAATTATTATTTA	8343	False	NA	NA	False	AATAAA	-38	NA	99276919	99276079	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_99276463_99276756
ES_00008939	chr11	-	1534	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	42	0	42	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9641	False	NA	NA	False	AATAAA	-21	NA	100036904	100031635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
ES_00008940	chr11	-	1554	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	-3	0	3	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGACTGGTGTGTGTGTGT	NA	False	NA	51	True	AATAAA	-19	NA	100151855	100147039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
ES_00008941	chr11	-	1065	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	0	-3	0	3	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCATTTGTCCTGTCAT	NA	False	NA	-3	True	AATAAA	-26	NA	100156804	100153704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
ES_00008942	chr11	-	1554	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	0	-12	0	7	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTCCTGTCATTGGC	NA	False	NA	1	True	AATAAA	-30	NA	100160697	100153700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
ES_00008943	chr11	-	3652	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	0	-1532	0	0	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2048	False	NA	-2	True	AATAAA	-17	NA	100246913	100238152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ES_00008944	chr11	-	3674	11	NNC	ENSMUSG00000006930.16	novel	3316	12	NA	NA	-19	0	intron_retention	FALSE	canonical	3	37	junction_3	166.15787673174	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2029	False	NA	-2	True	AATAAA	-17	NA	100246932	100238152	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_100240446_100242035_100242128_100242243_100242382_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ES_00008945	chr11	-	3316	12	FSM	ENSMUSG00000006930.16	ENSMUST00000138603.9	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	156.163931667075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2007	False	NA	-2	True	AATAAA	-17	NA	100246954	100238152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100239686_100240062_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ES_00008947	chr11	-	567	1	FSM	ENSMUSG00000091478.3	ENSMUST00000081241.2	411	1	-36	-120	-36	120	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGCCTGTCTTTCTA	8040	False	NA	NA	False	NA	NA	NA	100252988	100252421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100252400_100253000
ES_00008949	chr11	-	3205	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288575	100261444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
ES_00008951	chr11	-	1530	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	-92	-90	0	84	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCCCAGACTACACGGAAA	NA	False	NA	82	True	NA	NA	NA	100331846	100320094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
ES_00008952	chr11	-	1348	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	-4	0	1	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGCGTCTTTAATCCCA	NA	False	NA	-1	True	ATTAAA	-20	NA	100331846	100320177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
ES_00008953	chr11	-	1499	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	-16	-84	-16	84	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCCCAGACTACACGGAAA	NA	False	NA	82	True	NA	NA	NA	100331931	100320094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ES_00008954	chr11	-	2449	2	FSM	ENSMUSG00000048732.6	ENSMUST00000056665.4	2393	2	0	-56	0	56	multi-exon	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACGTGGGGCTCTAAGC	7694	False	NA	48	True	NA	NA	NA	100363567	100353383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100355272_100363006
ES_00008955	chr11	-	4350	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	46	-3	46	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	5198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418780	100367178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ES_00008956	chr11	-	4386	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	55	-15	55	15	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCGTGTCCTCTGCTTT	NA	False	NA	1	True	AATAAA	-33	NA	100418771	100367163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ES_00008959	chr11	-	2330	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5382	False	NA	-21	True	AATAAA	-15	NA	100510994	100473643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ES_00008960	chr11	-	1894	4	FSM	ENSMUSG00000014195.17	ENSMUST00000128414.9	1892	4	0	-2	0	0	multi-exon	FALSE	canonical	3	2470	junction_1	152.998910671503	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	537	False	NA	-21	True	AATAAA	-15	NA	100476562	100473643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100474483_100475036_100475190_100475377_100475525_100475807
ES_00008963	chr11	-	1049	5	FSM	ENSMUSG00000014195.17	ENSMUST00000154972.9	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	1222.31570696772	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTCCTTTTGTTTTG	5930	False	NA	NA	False	NA	NA	NA	100510446	100488252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ES_00008967	chr11	-	3046	18	FSM	ENSMUSG00000020918.15	ENSMUST00000103118.4	3046	18	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	104.829867108865	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6779	False	NA	-1	True	AATAAA	-18	NA	100603291	100595571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ES_00008968	chr11	-	3299	16	FSM	ENSMUSG00000020918.15	ENSMUST00000126299.2	3269	16	-30	0	-14	0	multi-exon	FALSE	canonical	3	120	junction_8	109.540170206591	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6765	False	NA	-1	True	AATAAA	-18	NA	100603305	100595571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ES_00008969	chr11	-	1920	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	-5	0	5	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTTGGTGTCTGAAGT	NA	False	NA	-5	True	ATTAAA	-22	NA	100629041	100605829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ES_00008970	chr11	-	1974	6	FSM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	0	-7	0	5	multi-exon	FALSE	canonical	1	1	junction_2	59.308009577122	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTTGGTGTCTGAAGT	NA	False	NA	-5	True	ATTAAA	-22	NA	100629041	100605829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100606989_100607583_100607732_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ES_00008971	chr11	-	2468	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	-6	0	6	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTATTTTATGTTATC	NA	False	NA	NA	False	NA	NA	NA	100661783	100656851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
ES_00008973	chr11	-	5054	19	FSM	ENSMUSG00000020919.12	ENSMUST00000004143.3	5062	19	8	0	8	0	multi-exon	TRUE	canonical	3	41	junction_6	7.16386680880661	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGAGTCCTGTTTCCTTT	NA	False	NA	0	True	AATAAA	-21	NA	100741542	100671556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100674049_100674497_100674603_100675078_100675131_100678034_100678206_100679194_100679326_100679492_100679588_100681572_100681780_100685369_100685463_100687244_100687368_100687443_100687532_100687889_100688070_100688471_100688628_100689059_100689212_100689416_100689548_100692232_100692408_100693264_100693355_100695695_100695853_100699221_100699360_100741224
ES_00008974	chr11	-	5808	24	FSM	ENSMUSG00000004040.17	ENSMUST00000103114.8	6042	24	0	234	0	-234	multi-exon	FALSE	canonical	3	67	junction_2	102.13864331127	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGAGTGTTTAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	100830230	100776157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ES_00008975	chr11	-	4516	24	FSM	ENSMUSG00000004040.17	ENSMUST00000127638.8	4516	24	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_2	54.0525544164325	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCAGTGGGGGCTGGCTGG	NA	False	NA	-4	True	AATAAA	-19	NA	100830366	100777635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ES_00008977	chr11	-	2941	24	FSM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	0	-14	0	0	multi-exon	FALSE	canonical	3	73	junction_3	102.661666503989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAATTAAAGGGCAAAAC	NA	False	NA	NA	False	ATTAAA	-12	NA	100830206	100779047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783902_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ES_00008981	chr11	-	3340	2	FSM	ENSMUSG00000004044.10	ENSMUST00000060792.6	3491	2	151	0	151	0	multi-exon	FALSE	canonical	2	4	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGAGGTTATATTGT	NA	False	NA	1	True	AATAAA	-19	NA	100861562	100847558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100850152_100860815
ES_00008982	chr11	-	1030	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986226	100982957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
ES_00008986	chr11	-	3168	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	0	-3	0	3	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCGTTGTGTACTTCC	9795	False	NA	4	True	AATAAA	-32	NA	101010719	100987335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
ES_00008987	chr11	-	2999	13	FSM	ENSMUSG00000035172.16	ENSMUST00000129895.8	2635	13	-362	-2	0	2	multi-exon	FALSE	canonical	3	7	junction_2	20.3856907876306	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTGGGAGTGTTGTC	725	False	NA	5	True	AAGAAA	-24	NA	101062143	101053502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101053891_101054331_101054524_101054863_101055298_101055484_101055618_101055876_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ES_00008988	chr11	-	3016	13	FSM	ENSMUSG00000035172.16	ENSMUST00000164474.8	3010	13	0	-6	0	3	multi-exon	FALSE	canonical	3	27	junction_4	14.3843568581366	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGGGAGTGTTGTCG	725	False	NA	6	True	AAGAAA	-25	NA	101062143	101053501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055885_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ES_00008989	chr11	-	3059	13	FSM	ENSMUSG00000035172.16	ENSMUST00000043397.14	3056	13	0	-3	0	3	multi-exon	FALSE	canonical	3	20	junction_4	15.6142740963375	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGGGAGTGTTGTCG	691	False	NA	6	True	AAGAAA	-25	NA	101062177	101053501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055876_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ES_00008990	chr11	-	4204	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107284.8	4207	21	3	0	3	0	multi-exon	FALSE	canonical	3	124	junction_20	14.6399282785128	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCAAGTTGTGTCCTC	2608	False	NA	-7	True	AATAAA	-15	NA	101117286	101081940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
ES_00008991	chr11	-	3636	15	FSM	ENSMUSG00000006920.15	ENSMUST00000100417.3	3636	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	38.227634517667	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGCTGCAGTTTAT	2642	False	NA	NA	False	GATAAA	-21	NA	101117252	101088214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108195_101109479_101109547_101117221
ES_00008994	chr11	-	761	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	125	0	-46	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5627	False	NA	-5	True	AATAAA	-20	NA	101169815	101168793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101169279_101169539
ES_00008995	chr11	-	4361	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	0	4	0	-4	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGGTTTCCAATTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	101193112	101176781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ES_00008996	chr11	-	3476	10	FSM	ENSMUSG00000035086.14	ENSMUST00000139997.9	3476	10	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_6	43.6603048800878	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193078	101179087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
ES_00008997	chr11	-	2662	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
ES_00009004	chr11	-	1513	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	3	0	3	0	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308438	101297664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ES_00009005	chr11	-	1076	1	FSM	ENSMUSG00000075528.14	ENSMUST00000189049.2	817	1	-25	-234	-25	234	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTCAAAACTCAATATGTA	NA	False	NA	NA	False	NA	NA	NA	101305430	101304354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101304400_101305400
ES_00009007	chr11	-	2785	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	0	-19	0	19	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGAGTTGCTGGAGAAT	NA	False	NA	8	True	AATAAA	-34	NA	101357056	101349551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
ES_00009008	chr11	-	6598	24	NNC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	0	4657	intron_retention	FALSE	non_canonical	0	0	junction_1	74.5096636759045	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTAGATGTTTAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	101442705	101374932	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_101374959_101379589_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
ES_00009012	chr11	-	624	6	FSM	ENSMUSG00000017724.15	ENSMUST00000129995.8	672	6	48	0	48	0	multi-exon	FALSE	canonical	2	11	junction_3	3.68781778291716	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGTGGACATGTGCCACTC	211	False	NA	NA	False	NA	NA	NA	101675269	101664687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055
ES_00009015	chr11	-	3529	12	FSM	ENSMUSG00000017314.13	ENSMUST00000100398.5	3577	12	48	0	-17	0	multi-exon	FALSE	canonical	2	2	junction_2	3.33773813648833	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACCACGGCCTCTGAT	722	False	NA	NA	False	NA	NA	NA	101973262	101948349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101973154
ES_00009016	chr11	-	1574	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
ES_00009018	chr11	-	2256	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	0	0	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6356	False	NA	-1	True	AATAAA	-23	NA	102076122	102053322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ES_00009019	chr11	-	570	5	FSM	ENSMUSG00000020922.12	ENSMUST00000140429.8	570	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	481.505192080002	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTTCAAAAAAAAAAACCTA	8771	False	NA	-112	True	NA	NA	NA	102073707	102054777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102054994_102055369_102055463_102056185_102056313_102057912_102058023_102073683
ES_00009020	chr11	-	3926	27	FSM	ENSMUSG00000008855.18	ENSMUST00000107152.9	3788	27	16	-154	-4	147	multi-exon	TRUE	canonical	1	50	junction_25	47.7576630363989	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAATTCCCCGTACTCTT	NA	False	NA	NA	False	NA	NA	NA	102120976	102086422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109317_102115559_102115782_102120830
ES_00009021	chr11	-	3756	27	NIC	ENSMUSG00000008855.18	novel	3872	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	78	junction_13	40.333300731889	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120959	102086572	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
ES_00009022	chr11	-	3684	26	NIC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	22	junction_24	52.2038466015676	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120959	102086572	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102115559_102115782_102120830
ES_00009023	chr11	-	3763	27	NIC	ENSMUSG00000008855.18	novel	3759	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	61.7194454027935	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120959	102086572	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_102086695_102086773_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109317_102115559_102115782_102120830
ES_00009030	chr11	-	3707	13	FSM	ENSMUSG00000059995.13	ENSMUST00000107132.3	3706	13	0	-1	0	0	multi-exon	FALSE	canonical	3	20	junction_7	41.9393576753653	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCCTGCCCACTCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	102187455	102180125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184169_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
ES_00009031	chr11	-	3688	13	FSM	ENSMUSG00000059995.13	ENSMUST00000073234.9	3688	13	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_12	22.3811676788023	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCCTGCCCACTCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	102187457	102180125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
ES_00009032	chr11	-	4699	21	FSM	ENSMUSG00000020923.18	ENSMUST00000174302.8	4692	21	0	-7	0	7	multi-exon	FALSE	canonical	3	130	junction_20	166.063624855054	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTCACTGGAATTAAATA	9007	False	NA	41	True	AATAAA	-27	NA	102209922	102195378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
ES_00009033	chr11	-	4588	20	FSM	ENSMUSG00000020923.18	ENSMUST00000178839.8	4580	20	0	-8	0	7	multi-exon	FALSE	canonical	3	130	junction_19	207.277671834178	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTCACTGGAATTAAATA	9007	False	NA	41	True	AATAAA	-27	NA	102209922	102195378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
ES_00009034	chr11	-	5048	22	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	-119	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	232.74304342566	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCGTCTGGTCACTGGAA	8888	False	NA	34	True	AATAAA	-20	NA	102210041	102195385	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102196651_102196682_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209404
ES_00009035	chr11	-	3199	19	FSM	ENSMUSG00000020923.18	ENSMUST00000107115.8	3199	19	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_13	159.309621666601	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9137	False	NA	60	True	NA	NA	NA	102207530	102196749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
ES_00009036	chr11	-	3382	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	-96	0	-71	0	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9065	False	NA	60	True	NA	NA	NA	102207602	102196749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
ES_00009037	chr11	-	3258	20	FSM	ENSMUSG00000020923.18	ENSMUST00000107117.9	3258	20	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_19	213.309601634771	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	7970	False	NA	60	True	NA	NA	NA	102208697	102196749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
ES_00009038	chr11	-	3468	21	FSM	ENSMUSG00000020923.18	ENSMUST00000173870.8	2936	21	30	-562	30	0	multi-exon	FALSE	canonical	3	106	junction_20	170.388167136101	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	8391	False	NA	60	True	NA	NA	NA	102210538	102196749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102210149
ES_00009039	chr11	-	2759	21	FSM	ENSMUSG00000020923.18	ENSMUST00000107123.10	2759	21	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_20	173.298954122637	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGGTGGGAGAGAGTCT	8206	False	NA	NA	False	NA	NA	NA	102208461	102197123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
ES_00009042	chr11	-	1685	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	0	0	0	0	multi-exon	TRUE	canonical	3	4398	junction_3	174.765959202208	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7688	False	NA	NA	False	NA	NA	NA	102298370	102293810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ES_00009043	chr11	-	1564	11	FSM	ENSMUSG00000018677.10	ENSMUST00000153395.8	1564	11	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_2	183.250211459632	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7726	False	NA	95	True	NA	NA	NA	102298332	102293970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102294362_102294458_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ES_00009047	chr11	-	3062	8	FSM	ENSMUSG00000034685.5	ENSMUST00000049057.5	3118	8	56	0	-32	0	multi-exon	FALSE	canonical	3	9	junction_1	3.01695886884898	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTCTTTCTCTCTCTC	NA	False	NA	-4	True	AATACA	-18	NA	102338452	102327806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102329736_102330257_102330385_102330485_102330603_102330699_102330880_102330961_102331121_102334475_102334569_102334789_102335018_102338223
ES_00009048	chr11	-	6875	8	FSM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	0	-4	0	4	multi-exon	FALSE	canonical	3	114	junction_1	22.9658131018384	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTGTTGTGATTGC	637	False	NA	1	True	AATAAA	-22	NA	102447025	102366736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
ES_00009050	chr11	-	390	6	FSM	ENSMUSG00000034621.15	ENSMUST00000131573.8	390	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	69.7005021502715	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCTAGAAGTAGAGAAAGA	637	False	NA	NA	False	NA	NA	NA	102447025	102398319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102398356_102398969_102399038_102418919_102418993_102422138_102422157_102429107_102429183_102446905
ES_00009051	chr11	-	822	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	0	-4	0	4	multi-exon	FALSE	canonical	2	9	junction_2	3.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTTCTTTTTTTTTTTTT	8238	False	NA	NA	False	NA	NA	NA	102470287	102467219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102467624_102469575_102469722_102470015
ES_00009052	chr11	-	2286	6	NNC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	0	48972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.095094364929	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCAAAGCCATCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	102588496	102526539	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102526572_102575511_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
ES_00009053	chr11	-	2366	5	FSM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	239.593405585379	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCTGTCTTGTTCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	102588608	102575511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
ES_00009055	chr11	-	989	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTTCTTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	102588560	102579144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
ES_00009056	chr11	-	3221	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	6	-1337	6	1337	multi-exon	FALSE	canonical	3	30	junction_2	376	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTTAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	102710520	102689067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102692022_102693666_102693743_102710329
ES_00009057	chr11	-	1903	3	FSM	ENSMUSG00000034520.15	ENSMUST00000068933.12	1903	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_2	138	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710005	102690404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102692022_102693666_102693743_102709795
ES_00009060	chr11	-	3324	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_26	264.162864923118	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8466	False	NA	-5	True	TATAAA	-22	NA	102771793	102729298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
ES_00009061	chr11	-	3321	28	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	289.083827865911	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8466	False	NA	-5	True	TATAAA	-22	NA	102771793	102729298	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762008_102768434_102768545_102771720
ES_00009062	chr11	-	3328	16	FSM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	0	-2	0	2	multi-exon	FALSE	canonical	3	261	junction_10	31.928809700471	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAAAGTTAGTGCTGA	3724	False	NA	-5	True	AATAAA	-34	NA	102815950	102796352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
ES_00009066	chr11	-	3023	15	FSM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	6.65168384389875	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTACCTTTCCACT	9409	False	NA	NA	False	AGTAAA	-2	NA	102992484	102961129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102992205
ES_00009070	chr11	-	1439	3	FSM	ENSMUSG00000034255.19	ENSMUST00000092557.6	1504	3	65	0	8	0	multi-exon	FALSE	canonical	3	7	junction_2	1.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATAGCCTCGGAATCT	8182	False	NA	NA	False	NA	NA	NA	103254225	103250564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103251745_103253032_103253161_103254094
ES_00009071	chr11	-	5968	12	FSM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_6	16.0020659823186	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTGTGTTTAGTGTCTAT	NA	False	NA	-2	True	AATAAA	-17	NA	103303513	103255100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
ES_00009072	chr11	-	3263	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	3	0	-3	multi-exon	TRUE	canonical	3	264	junction_1	54.6867442804927	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCACTTGGCATTCTTTG	NA	False	NA	-1	True	AATAAA	-28	NA	103588724	103567677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ES_00009073	chr11	-	1264	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-220	0	-16	0	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGGAAGCAGCTACTC	NA	False	NA	NA	False	AAGAAA	-40	NA	103588740	103569551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ES_00009074	chr11	-	3769	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	0	-3	0	3	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAGACCAGTATTTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	103844882	103712604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ES_00009076	chr11	-	5366	14	FSM	ENSMUSG00000018412.17	ENSMUST00000106977.8	5510	14	-127	271	-127	1	multi-exon	FALSE	canonical	3	79	junction_6	53.9110597824222	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCAGGCTTTTCTTGA	8042	False	NA	-1	True	NA	NA	NA	104333244	104224325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332550
ES_00009077	chr11	-	5430	15	FSM	ENSMUSG00000018412.17	ENSMUST00000106972.8	5427	15	0	-3	0	3	multi-exon	FALSE	canonical	3	85	junction_14	49.1984735120752	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCAGGCTTTTCTTGATA	8169	False	NA	1	True	NA	NA	NA	104333117	104224323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332550
ES_00009078	chr11	-	5247	13	NIC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-108	0	combination_of_known_splicesites	FALSE	canonical	3	61	junction_10	65.4221335295292	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTCAGGCTTTTCTTG	8061	False	NA	-2	True	NA	NA	NA	104333225	104224326	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104269510_104269653_104314747_104316120_104332550
ES_00009080	chr11	-	5029	16	NNC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-610	1	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_15	56.9102997903035	229	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCAGGCTTTTCTTGA	9722	False	NA	-1	True	NA	NA	NA	104360297	104224325	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104360243
ES_00009082	chr11	-	5788	19	FSM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-137	-226	0	226	multi-exon	FALSE	canonical	3	109	junction_8	36.161503300992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAATTTTTAGAATATAT	2066	False	NA	NA	False	AATAAA	-22	NA	104441446	104393344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
ES_00009083	chr11	-	5703	19	NNC	ENSMUSG00000020687.14	novel	3160	19	NA	NA	-15	226	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_11	63.2860691085319	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAATTTTTAGAATATAT	2051	False	NA	NA	False	AATAAA	-22	NA	104441461	104393344	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104417011_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
ES_00009084	chr11	-	5444	19	NNC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_18	50.3843560376962	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATAATCAAGGTGTTAA	2066	False	NA	-32	True	AATAAA	-16	NA	104441446	104393570	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
ES_00009088	chr11	-	3307	1	FSM	ENSMUSG00000081965.2	ENSMUST00000118770.2	1845	1	-227	-1235	-227	1235	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTCCTCTTAAATAGC	NA	False	NA	NA	False	NA	NA	NA	105057673	105054366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_105054400_105057700
ES_00009091	chr11	-	2502	6	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-573	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	67.416318499307	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835886	105824527	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105835823
ES_00009092	chr11	-	3095	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835313	105824527	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
ES_00009094	chr11	-	967	4	FSM	ENSMUSG00000019590.17	ENSMUST00000150563.3	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	62.0537401505072	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTCCTGAACACAGCG	NA	False	NA	NA	False	NA	NA	NA	105835313	105827380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_105827480_105828454_105828667_105830925_105831205_105834936
ES_00009096	chr11	-	2045	12	NNC	ENSMUSG00000069631.15	novel	1517	11	NA	NA	0	49623	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	38.7276995281646	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCCAAAATGGTAGTACA	NA	False	NA	NA	False	NA	NA	NA	106084365	106004532	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106004566_106054155_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
ES_00009097	chr11	-	1263	5	FSM	ENSMUSG00000040699.14	ENSMUST00000064545.11	798	5	-69	-396	-69	279	multi-exon	FALSE	canonical	1	1	junction_4	116.808336603172	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTGTGTGGCCTGATG	NA	False	NA	-8	True	TTTAAA	-21	NA	106050822	106048860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050638
ES_00009098	chr11	-	1182	5	FSM	ENSMUSG00000040699.14	ENSMUST00000045923.10	2950	5	0	1768	0	290	multi-exon	FALSE	canonical	3	236	junction_1	24.7638849940796	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGATGGGGATGCTTTG	NA	False	NA	3	True	TTTAAA	-32	NA	106050968	106048849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050876
ES_00009099	chr11	-	2406	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	3	350	combination_of_known_splicesites	FALSE	canonical	3	51	junction_9	25.5305699113827	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCACCACGCCCGGCTCCG	NA	False	NA	NA	False	NA	NA	NA	106084385	106053805	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926_106078007_106084291
ES_00009102	chr11	-	3144	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146905	106139967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ES_00009103	chr11	-	543	2	FSM	ENSMUSG00000020706.14	ENSMUST00000127803.2	543	2	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTTTGATCCCAAGTT	NA	False	NA	NA	False	NA	NA	NA	106144821	106144201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106144231_106144307
ES_00009107	chr11	-	1329	6	FSM	ENSMUSG00000040592.12	ENSMUST00000044228.11	1431	6	103	-1	103	1	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCGTGATATCATCTCT	4959	False	NA	1	True	AATAAA	-21	NA	106205485	106202165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
ES_00009108	chr11	-	1047	4	FSM	ENSMUSG00000001029.16	ENSMUST00000001055.15	1282	4	235	0	235	0	multi-exon	FALSE	canonical	1	1	junction_3	1.69967317119759	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTGCCCGCCATGACTG	NA	False	NA	NA	False	AATACA	-16	NA	106273372	106268481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106268821_106269471_106269790_106271492_106271766_106273255
ES_00009109	chr11	-	7022	22	FSM	ENSMUSG00000020715.10	ENSMUST00000001059.9	6946	22	-77	1	-21	-1	multi-exon	FALSE	canonical	2	5	junction_11	5.67646212197547	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGCCTTGTTTCTTAA	9412	False	NA	-2	True	AATAAA	-17	NA	106378699	106285476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106289581_106290597_106290666_106291020_106291145_106294273_106294402_106296547_106296696_106297866_106298067_106298321_106298422_106298885_106299076_106299715_106299807_106300720_106300989_106302448_106302641_106305176_106305296_106309649_106309816_106310844_106310924_106312531_106312794_106314212_106314315_106317638_106317762_106319839_106319913_106325740_106325814_106327915_106327950_106349733_106349855_106378442
ES_00009111	chr11	-	4934	12	FSM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_11	20.6061051692923	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCAGACAAGCATGTT	3331	False	NA	NA	False	AATAAA	-11	NA	106503756	106392972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
ES_00009115	chr11	-	3428	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9067	154	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_3	462.558633900523	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCCTTTGCACTGTGCT	357	False	NA	NA	False	NA	NA	NA	106615287	106544888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ES_00009116	chr11	-	3482	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9067	154	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCCTTTGCACTGTGCT	357	False	NA	NA	False	NA	NA	NA	106615287	106544888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ES_00009117	chr11	-	3284	15	FSM	ENSMUSG00000020717.20	ENSMUST00000080853.11	3283	15	0	-1	0	0	multi-exon	FALSE	canonical	3	566	junction_1	284.128393297029	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	9559	False	NA	-9	True	AATAAA	-19	NA	106606085	106545042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
ES_00009118	chr11	-	3007	15	FSM	ENSMUSG00000020717.20	ENSMUST00000183610.8	3006	15	0	-1	0	0	multi-exon	FALSE	canonical	3	36	junction_12	484.073763142835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	9556	False	NA	-9	True	AATAAA	-19	NA	106606088	106545042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106590417_106590712_106605727_106605755_106605844
ES_00009119	chr11	-	3233	14	FSM	ENSMUSG00000020717.20	ENSMUST00000103069.10	3233	14	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_1	285.979785771342	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	9553	False	NA	-9	True	AATAAA	-19	NA	106606091	106545042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
ES_00009120	chr11	-	3437	16	FSM	ENSMUSG00000020717.20	ENSMUST00000106796.9	3441	16	4	0	4	0	multi-exon	FALSE	canonical	3	410	junction_2	373.181135643269	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	9428	False	NA	-10	True	AATAAA	-18	NA	106606216	106545043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
ES_00009121	chr11	-	3250	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9020	0	at_least_one_novel_splicesite	FALSE	canonical	3	249	junction_15	384.021504027516	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	404	False	NA	-9	True	AATAAA	-19	NA	106615240	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ES_00009122	chr11	-	3236	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9063	-2	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_14	370.599266494863	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTATCTGCATTCAAGT	361	False	NA	-12	True	AATAAA	-16	NA	106615283	106545045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ES_00009123	chr11	-	3229	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9068	-2	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_14	370.771513611985	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTATCTGCATTCAAGT	356	False	NA	-12	True	AATAAA	-16	NA	106615288	106545045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ES_00009124	chr11	-	3284	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9063	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_15	360.787927859136	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	361	False	NA	-9	True	AATAAA	-19	NA	106615283	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ES_00009125	chr11	-	3231	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9067	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_14	499.636990673208	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	357	False	NA	-9	True	AATAAA	-19	NA	106615287	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615208
ES_00009126	chr11	-	3325	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9067	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_15	411.802671190948	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	357	False	NA	-9	True	AATAAA	-19	NA	106615287	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615168
ES_00009127	chr11	-	3351	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9067	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_16	423.912869695826	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	357	False	NA	-9	True	AATAAA	-19	NA	106615287	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ES_00009128	chr11	-	3300	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9067	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	357	False	NA	-9	True	AATAAA	-19	NA	106615287	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ES_00009129	chr11	-	202	2	Intergenic	novelGene_762	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	112	junction_1	0	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAACCTTT	8588	False	NA	NA	False	NA	NA	NA	106656859	106649498	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_106649609_106656767
ES_00009130	chr11	-	1421	8	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4279	False	NA	NA	False	AATAAA	-33	NA	106670381	106659078	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
ES_00009131	chr11	-	1509	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	0	-3	0	3	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGACTTTTGTATTT	4319	False	NA	NA	False	AATAAA	-36	NA	106670341	106659075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
ES_00009133	chr11	-	3595	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	-2	0	2	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	-7	True	AATAAA	-19	NA	106679320	106672371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ES_00009137	chr11	-	831	6	FSM	ENSMUSG00000020719.15	ENSMUST00000123339.2	831	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	1642.58715446091	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAAGTATTATCTTAA	9265	False	NA	NA	False	CATAAA	-34	NA	106679709	106676896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
ES_00009138	chr11	-	5299	18	FSM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	0	-9	0	9	multi-exon	TRUE	canonical	2	5	junction_17	11.382314941417	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTTACTTGTTTTGAA	NA	False	NA	3	True	AATGAA	-43	NA	106811541	106710882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106762327_106762437_106811006
ES_00009139	chr11	-	3125	19	FSM	ENSMUSG00000018363.17	ENSMUST00000092517.9	3125	19	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_17	7.74038631121946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTAATGCAGCCATTTA	NA	False	NA	NA	False	NA	NA	NA	106811296	106712850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106762327_106762437_106766726_106766766_106811006
ES_00009143	chr11	-	2177	6	FSM	ENSMUSG00000040481.18	ENSMUST00000208369.2	2177	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	22.5619148123558	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGACGCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	106938169	106926222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106927417_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825
ES_00009147	chr11	-	3158	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ES_00009148	chr11	-	3640	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	0	-542	0	542	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCGGTGGTGGTACAT	1101	False	NA	NA	False	NA	NA	NA	107080207	107056946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ES_00009149	chr11	-	5478	8	FSM	ENSMUSG00000040430.19	ENSMUST00000040380.13	5478	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	29.0685326742981	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGAGTGTAGCATCCTCT	NA	False	NA	-1	True	AATAAA	-17	NA	107228463	107098717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107103485_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237
ES_00009150	chr11	-	6413	10	FSM	ENSMUSG00000040430.19	ENSMUST00000103064.10	6329	10	-84	0	-84	0	multi-exon	FALSE	canonical	0	0	junction_6	23.9495354216649	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGAGTGTAGCATCCTCT	NA	False	NA	-1	True	AATAAA	-17	NA	107361609	107098717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237_107228387_107360716
ES_00009151	chr11	-	202	1	Intergenic	novelGene_774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCTTTTTTAAAGATT	6380	False	NA	NA	False	NA	NA	NA	107407328	107407126	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_107407100_107407300
ES_00009153	chr11	-	8292	17	FSM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	62	55	62	-55	multi-exon	FALSE	canonical	2	9	junction_8	3.24458683810435	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATTGTAGTTCGGAAGC	6346	False	NA	NA	False	NA	NA	NA	108234692	107824267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107830507_107842291_107842433_107844467_107844576_107852398_107852480_107869059_107869199_107870028_107870092_107872436_107872529_107874710_107874885_107877073_107877212_107903452_107903550_107903770_107903906_107905050_107905208_107944800_107944930_107948587_107948700_108082955_108083039_108231471_108231504_108234320
ES_00009155	chr11	-	4042	6	NNC	ENSMUSG00000041920.15	novel	4219	6	NA	NA	-1410	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	850	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGATGTTCTTCTGTAT	1160	False	NA	0	True	AATAAA	-22	NA	109365834	109341679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
ES_00009157	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502258	109464156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ES_00009158	chr11	-	5160	12	FSM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	-21	-1801	-21	0	multi-exon	FALSE	canonical	1	33	junction_4	24.2817484087354	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502279	109464156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ES_00009160	chr11	-	8221	39	FSM	ENSMUSG00000018800.15	ENSMUST00000043961.12	8231	39	0	10	0	-10	multi-exon	FALSE	canonical	1	7	junction_11	4.33987183389395	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATCTATGACAGACTT	NA	False	NA	NA	False	AATAAA	-11	NA	110228504	110160204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_110163393_110164151_110164208_110165145_110165226_110166089_110166240_110167279_110167400_110168213_110168309_110168387_110168464_110168996_110169173_110169934_110170027_110170117_110170236_110170451_110170579_110176519_110176612_110177589_110177665_110178407_110178543_110178888_110179003_110180616_110180788_110182911_110183026_110184065_110184204_110184612_110184741_110187293_110187464_110188861_110189064_110190716_110190837_110192238_110192379_110192556_110192648_110193818_110193958_110194918_110195039_110195675_110195852_110197070_110197182_110200215_110200275_110200962_110201132_110202136_110202285_110204154_110204344_110205349_110205492_110208527_110208758_110210619_110210709_110217385_110217548_110218557_110218763_110219962_110220083_110228310
ES_00009161	chr11	-	610	5	FSM	ENSMUSG00000018800.15	ENSMUST00000134721.2	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	5.93190525885234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCATTATACAGGTAATGT	NA	False	NA	NA	False	NA	NA	NA	110228466	110210632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_110210709_110217385_110217548_110218557_110218763_110219962_110220083_110228419
ES_00009163	chr11	-	986	1	FSM	ENSMUSG00000081666.2	ENSMUST00000121349.2	977	1	5	-14	5	14	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTCTTAGCTGATGATT	NA	False	NA	NA	False	NA	NA	NA	111616445	111615459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_111615500_111616400
ES_00009164	chr11	-	1819	3	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	3	-37	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	1	218	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCATTGTATAAATTCCT	NA	False	NA	NA	False	NA	NA	NA	113092661	112934757	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_112935987_112958167_112958213_113092116
ES_00009165	chr11	-	3136	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	0	-472	0	472	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCACTGTATCATTCAG	7769	False	NA	NA	False	NA	NA	NA	113456582	113135206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ES_00009166	chr11	-	3160	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	-472	0	472	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCACTGTATCATTCAG	7766	False	NA	NA	False	NA	NA	NA	113456585	113135206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ES_00009167	chr11	-	2671	11	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	151.780631175391	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7757	False	NA	-2	True	AATAAA	-19	NA	113456594	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113136692_113136717_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ES_00009168	chr11	-	2676	11	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	154	junction_6	116.342425623674	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7731	False	NA	-2	True	AATAAA	-19	NA	113456620	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113136692_113136717_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ES_00009169	chr11	-	2710	11	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-26155	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_10	155.114022576942	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	NA	False	NA	-2	True	AATAAA	-19	NA	113482760	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113136692_113136717_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113482607
ES_00009170	chr11	-	2671	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	167.525785743237	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7780	False	NA	-2	True	AATAAA	-19	NA	113456571	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ES_00009171	chr11	-	2646	10	NNC	ENSMUSG00000041654.16	novel	2664	10	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	canonical	3	152	junction_9	132.005985648052	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7783	False	NA	-3	True	AATAAA	-18	NA	113456568	113135679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ES_00009173	chr11	-	2713	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-26114	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	188.545308436284	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	NA	False	NA	-2	True	AATAAA	-19	NA	113482719	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113482607
ES_00009174	chr11	-	2793	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-26155	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	213.067501041337	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	NA	False	NA	-3	True	AATAAA	-18	NA	113482760	113135679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113476290_113476328_113482607
ES_00009176	chr11	-	2629	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	0	-10	0	10	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTGGTTATTTCTAAAA	NA	False	NA	2	True	ATTAAA	-34	NA	113574981	113552134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113554370_113568129_113568230_113574687
ES_00009177	chr11	-	1380	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	0	-5	0	5	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATTCCTTTTCTTGAT	NA	False	NA	-4	True	AATATA	-21	NA	113600352	113588992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ES_00009178	chr11	-	1107	8	NNC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	78.8949184882354	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTGATTCCTTTTCTT	NA	False	NA	-7	True	AATATA	-18	NA	113600835	113588995	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600737
ES_00009179	chr11	-	1391	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-174	1	combination_of_known_junctions	FALSE	canonical	3	87	junction_7	41.9649999939211	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	-8	True	AATATA	-17	NA	113600526	113588996	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ES_00009180	chr11	-	1343	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-70	1	combination_of_known_junctions	FALSE	canonical	3	41	junction_7	55.2692851188707	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	-8	True	AATATA	-17	NA	113600913	113588996	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ES_00009182	chr11	-	3464	2	FSM	ENSMUSG00000041598.8	ENSMUST00000106616.2	3405	2	-61	2	-61	0	multi-exon	FALSE	canonical	3	5	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	7865	False	NA	-2	True	ATTAAA	-15	NA	113642205	113617677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113620492_113641555
ES_00009183	chr11	-	2984	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	25	-1	25	-1	multi-exon	FALSE	canonical	3	115	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAGTGTCTGACTCTTCT	7388	False	NA	-1	True	ATTAAA	-16	NA	113642682	113617676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113620492_113642513
ES_00009184	chr11	-	1143	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	51.0217818409179	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078158	115073657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077661_115077944
ES_00009186	chr11	-	1733	1	NIC	ENSMUSG00000020734.14	novel	4279	13	NA	NA	14528	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCCTAGCTGCCTCAC	NA	False	NA	NA	False	ATTAAA	-19	NA	115141727	115139994	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_115140000_115141700
ES_00009187	chr11	-	1958	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	-1	-9	-1	9	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTACCATTTTTGGGG	NA	False	NA	9	True	AATAAA	-26	NA	115167877	115158840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
ES_00009192	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
ES_00009193	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	1301.70156333931	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
ES_00009195	chr11	-	867	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	-9	0	9	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGATGCTCCTTTTCCT	NA	False	NA	1	True	AATAAA	-28	NA	115382688	115381236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ES_00009196	chr11	-	907	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	15.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGGGGATCATTGAGAG	NA	False	NA	NA	False	NA	NA	NA	115382677	115381463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115382025_115382096_115382198_115382432
ES_00009198	chr11	-	696	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGGGTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	115405197	115391207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
ES_00009199	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	1864.33300554261	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115426643	115413927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
ES_00009200	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427102	115413927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
ES_00009202	chr11	-	3696	18	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	0	12225	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.973977276178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTATACTCATATG	3539	False	NA	NA	False	NA	NA	NA	115494719	115462855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115462895_115475081_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ES_00009203	chr11	-	3637	18	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	0	12225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.052439522461	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTATACTCATATG	3539	False	NA	NA	False	NA	NA	NA	115494719	115462855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115462895_115475081_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482521_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ES_00009204	chr11	-	2724	7	NNC	ENSMUSG00000059923.14	novel	2709	6	NA	NA	0	72015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	338.94345644468	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTATACTCATATG	4491	False	NA	NA	False	NA	NA	NA	115599402	115462855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115462895_115534873_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ES_00009205	chr11	-	3816	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	42.6075385788712	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ES_00009208	chr11	-	379	5	FSM	ENSMUSG00000020740.14	ENSMUST00000125097.2	379	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	163.52064089894	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGACAAGGTGTGTGT	3539	False	NA	NA	False	NA	NA	NA	115494719	115482467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115482521_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ES_00009209	chr11	-	1656	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503329	115498743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
ES_00009210	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ES_00009213	chr11	-	826	5	FSM	ENSMUSG00000020744.14	ENSMUST00000135552.2	826	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	67.705243519243	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCACTGCATAAGGAGGG	732	False	NA	NA	False	NA	NA	NA	115513651	115506265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115513463
ES_00009217	chr11	-	2709	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4470	False	NA	-1	True	AATAAA	-19	NA	115599423	115534870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ES_00009218	chr11	-	2689	6	NNC	ENSMUSG00000059923.14	novel	2709	6	NA	NA	-9	-5	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	348.945841069929	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACTGTGTGTCTTCATT	4482	False	NA	-6	True	AATAAA	-14	NA	115599411	115534875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115536778_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ES_00009220	chr11	-	204	2	Antisense	novelGene_ENSMUSG00000084130.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATAGTTTTAATTGTTG	8207	False	NA	NA	False	NA	NA	NA	115655601	115592509	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_115592703_115655590
ES_00009221	chr11	-	483	1	FSM	ENSMUSG00000083394.3	ENSMUST00000118352.3	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACGCAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	115615634	115615151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115615200_115615600
ES_00009223	chr11	-	1772	5	FSM	ENSMUSG00000020752.12	ENSMUST00000136774.7	1772	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	10.6301458127346	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	-2	True	AATAAA	-33	NA	115785962	115783420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115785545_115785821
ES_00009225	chr11	-	3594	20	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	14	-1	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_19	18.5488797998223	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTTCTTGGGTGTTTTA	NA	False	NA	-3	True	AATAAA	-32	NA	115824289	115783421	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614_115823745_115824106
ES_00009230	chr11	-	1406	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTCCTACTGCAGG	NA	False	NA	9	True	NA	NA	NA	115903545	115899282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
ES_00009231	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	2302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	False	NA	9	True	AATAAA	-39	NA	115915330	115912786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ES_00009232	chr11	-	773	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	0	0	0	0	multi-exon	FALSE	canonical	3	13934	junction_1	171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAAGATACCAATCT	NA	False	NA	NA	False	NA	NA	NA	115915299	115914334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115914362_115914450_115914605_115914707
ES_00009233	chr11	-	4215	32	FSM	ENSMUSG00000057948.13	ENSMUST00000106450.8	4046	32	-164	-5	27	5	multi-exon	TRUE	canonical	3	18	junction_15	5.60845207266718	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATAGTTGGCTTACAGT	NA	False	NA	4	True	AATAAA	-31	NA	115968740	115952915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
ES_00009234	chr11	-	1252	6	ISM	ENSMUSG00000057948.13	ENSMUST00000155120.2	991	7	30	-8	10	8	3prime_fragment	FALSE	canonical	3	26	junction_4	7.60526133673262	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGATCAGAGATCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	115968757	115966214	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
ES_00009235	chr11	-	1826	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977821	115969398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
ES_00009237	chr11	-	1441	10	NNC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	0	35914	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.797939824541	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAGAAA	410	False	NA	NA	False	NA	NA	NA	116029691	115986728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115986765_116022645_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ES_00009238	chr11	-	1504	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	2	-3	2	3	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCCTTTCATTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	115998943	115996574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
ES_00009239	chr11	-	2195	6	FSM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	0	-3	0	3	multi-exon	FALSE	canonical	3	60	junction_4	39.5777715390849	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCCTTTCATTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	116001063	115996574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ES_00009240	chr11	-	2670	6	FSM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	-466	0	-466	0	multi-exon	FALSE	canonical	3	54	junction_2	42.4951761968344	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116001538	115996577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ES_00009243	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	407	False	NA	-2	True	AATAAA	-20	NA	116029694	116022642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ES_00009245	chr11	-	998	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	0	-3	0	3	multi-exon	FALSE	canonical	3	763	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGCCCCATCTCCTTA	410	False	NA	NA	False	NA	NA	NA	116029691	116028604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116029448_116029536
ES_00009246	chr11	-	5305	30	FSM	ENSMUSG00000020776.19	ENSMUST00000103031.8	5252	30	0	-53	0	53	multi-exon	FALSE	canonical	3	14	junction_29	8.33099451920079	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCCTGAGTTGCCCCTG	NA	False	NA	44	True	GGGGCT	-21	NA	116058979	116033057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116058377
ES_00009248	chr11	-	3987	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_12	15.262593015675	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089871	116062713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ES_00009249	chr11	-	797	4	FSM	ENSMUSG00000020777.17	ENSMUST00000128793.2	798	4	1	0	1	0	multi-exon	FALSE	canonical	3	99	junction_2	2.49443825784929	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCGTAAGGTCCTTC	7428	False	NA	NA	False	NA	NA	NA	116073241	116070545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116070604_116071116_116071233_116071768_116071889_116072738
ES_00009250	chr11	-	2713	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	-185	-2	-185	2	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTGGTTTTTGCATG	9963	False	NA	0	True	ATTAAA	-19	NA	116165228	116135989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ES_00009251	chr11	-	3205	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ES_00009253	chr11	-	4629	19	FSM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	0	-10	0	10	multi-exon	FALSE	canonical	3	28	junction_1	6.47335469348423	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTATTCGTTTCAGTCAG	3349	False	NA	NA	False	NA	NA	NA	116303830	116227168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116229657_116235020_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014_116287134_116303522
ES_00009254	chr11	-	1841	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381174	116361670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ES_00009255	chr11	-	1712	9	FSM	ENSMUSG00000015869.17	ENSMUST00000152874.8	1691	9	0	-21	0	21	multi-exon	FALSE	canonical	3	22	junction_5	291.250321888234	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTCCTAGACCGTGACAA	NA	False	NA	14	True	NA	NA	NA	116381140	116361649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ES_00009257	chr11	-	884	5	FSM	ENSMUSG00000015869.17	ENSMUST00000130835.8	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	44.4936793263942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGATGTTTCTGGTA	NA	False	NA	NA	False	AAAAAG	-45	NA	116381115	116369117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ES_00009258	chr11	-	703	5	FSM	ENSMUSG00000015869.17	ENSMUST00000135196.2	703	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	363.982399986593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAAGAAGTGAGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	116381161	116369359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116369467_116370477_116370666_116376694_116376762_116378943_116378997_116380873
ES_00009260	chr11	-	5257	18	FSM	ENSMUSG00000020802.9	ENSMUST00000082152.5	5205	18	-52	0	-52	0	multi-exon	FALSE	canonical	2	105	junction_3	24.8790847526891	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGGGGGAGTTGGC	7413	False	NA	1	True	ATTAAA	-19	NA	116472325	116428565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445_116434559_116434691_116434847_116435173_116435647_116435871_116436023_116436150_116436261_116436659_116436804_116437286_116437351_116437696_116437795_116439595_116439707_116439859_116439920_116471837
ES_00009261	chr11	-	5248	18	NNC	ENSMUSG00000020802.9	novel	5205	18	NA	NA	-52	66	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_10	40.7732356749479	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGCTGATGTTGCTGTC	7413	False	NA	0	True	ATTAAA	-18	NA	116472325	116428499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445_116434559_116434691_116434847_116435173_116435647_116435946_116436023_116436150_116436261_116436659_116436804_116437286_116437351_116437696_116437795_116439595_116439707_116439859_116439920_116471837
ES_00009263	chr11	-	3633	19	NNC	ENSMUSG00000020806.16	novel	3593	19	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	28.1429880747901	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTTTTGCCTTAGAC	NA	False	NA	-15	True	ATTAAA	-19	NA	116515071	116488990	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495208_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
ES_00009264	chr11	-	237	2	Antisense	novelGene_ENSMUSG00000075410.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCCCCAAGCTCCATCCA	NA	False	NA	NA	False	NA	NA	NA	116557965	116526706	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_116526736_116557757
ES_00009267	chr11	-	3633	9	FSM	ENSMUSG00000057286.7	ENSMUST00000079545.6	3643	9	9	1	9	-1	multi-exon	TRUE	canonical	3	12	junction_5	7.34421541078419	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGGCCAAAAAAAGGTTT	NA	False	NA	NA	False	AAGAAA	-20	NA	116585685	116566129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116568508_116569291_116569392_116570732_116570817_116572684_116572789_116575171_116575311_116575922_116576092_116576661_116576837_116581137_116581199_116585262
ES_00009273	chr11	-	2051	4	FSM	ENSMUSG00000020814.14	ENSMUST00000021170.9	2063	4	0	12	0	-12	multi-exon	FALSE	canonical	3	89	junction_1	18.006171781426	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGCAGACTCAGAAGCCG	6326	False	NA	NA	False	NA	NA	NA	116718872	116693899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116695481_116702748_116702843_116707010_116707069_116718554
ES_00009274	chr11	-	1615	5	NNC	ENSMUSG00000020814.14	novel	2063	4	NA	NA	-39	-333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.492717931762	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCGAAATATGGAGACCGG	6287	False	NA	-5	True	AATAAA	-23	NA	116718911	116694220	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_116694928_116695081_116695481_116702748_116702843_116707010_116707069_116718554
ES_00009276	chr11	-	4539	3	FSM	ENSMUSG00000056962.12	ENSMUST00000130120.2	4538	3	0	-1	0	0	multi-exon	FALSE	canonical	3	254	junction_2	18.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734116	116728257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116732182_116733157_116733547_116733890
ES_00009277	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734275	116728257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ES_00009278	chr11	-	625	3	FSM	ENSMUSG00000034120.19	ENSMUST00000176834.8	620	3	0	-5	0	0	multi-exon	FALSE	canonical	3	235	junction_1	811.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	7011	False	NA	-5	True	ATTAAA	-31	NA	116742912	116740726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116741180_116741681_116741788_116742846
ES_00009279	chr11	-	1899	3	FSM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1775	junction_2	41.5	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	6003	False	NA	-5	True	ATTAAA	-31	NA	116743920	116740726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116741788_116742846_116743158_116743393
ES_00009280	chr11	-	1814	2	FSM	ENSMUSG00000034120.19	ENSMUST00000138484.3	1814	2	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTCCTGGTCTTTTG	6878	False	NA	-8	True	ATTAAA	-28	NA	116743045	116740729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116741180_116741681
ES_00009283	chr11	-	550	2	NNC	ENSMUSG00000083705.3	novel	669	2	NA	NA	-35	77912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCCTGTCTAGAACATT	NA	False	NA	NA	False	NA	NA	NA	117311988	117233550	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_117233593_117311480
ES_00009285	chr11	-	535	2	NNC	ENSMUSG00000083705.3	novel	669	2	NA	NA	-35	27782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACCAAAAAAACCAAAGA	NA	False	NA	NA	False	NA	NA	NA	117311988	117283680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_117283709_117311481
ES_00009288	chr11	-	2869	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	0	-4	0	4	multi-exon	TRUE	canonical	3	224	junction_9	41.6618095045227	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTTCAGGATGAGCT	NA	False	NA	0	True	ATTAAA	-19	NA	117671465	117656809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
ES_00009290	chr11	-	2841	20	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-593	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	87.7658367775478	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTTCAGGATGAGCT	NA	False	NA	0	True	ATTAAA	-19	NA	117672363	117656809	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664200_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117672275
ES_00009295	chr11	-	1170	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	2	19	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTTTCCCTAACTTGCA	NA	False	NA	2	True	ATTAAA	-35	NA	117716661	117706332	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
ES_00009296	chr11	-	1440	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	0	0	0	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716918	117706351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ES_00009301	chr11	-	3141	13	FSM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	0	-6	0	-3	multi-exon	FALSE	canonical	3	24	junction_4	8.05665701282003	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGTTCTGCTCTGCTGT	8632	False	NA	0	True	AATAAA	-22	NA	118139386	118054994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
ES_00009303	chr11	-	2330	4	FSM	ENSMUSG00000033909.18	ENSMUST00000148998.2	1212	4	85	-1203	85	0	multi-exon	FALSE	canonical	3	155	junction_2	18.1903515328563	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTCTGCCTTGT	NA	False	NA	-4	True	AATAAA	-25	NA	118154025	118150476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860
ES_00009304	chr11	-	3818	6	FSM	ENSMUSG00000033909.18	ENSMUST00000141647.8	3815	6	0	-3	0	0	multi-exon	FALSE	canonical	3	141	junction_5	19.8655480669424	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTCTGCCTTGT	NA	False	NA	-4	True	AATAAA	-25	NA	118156874	118150476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523
ES_00009305	chr11	-	5655	21	FSM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_6	17.6138439870461	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTCTGCCTTGT	NA	False	NA	-4	True	AATAAA	-25	NA	118181057	118150476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
ES_00009306	chr11	-	3570	5	FSM	ENSMUSG00000017466.10	ENSMUST00000017610.10	3709	5	144	-5	144	5	multi-exon	FALSE	canonical	3	24	junction_3	3.74165738677394	475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTTGATTCCTTGGCTG	2410	False	NA	-2	True	AATAAA	-16	NA	118246188	118191889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118194723_118201401_118201527_118208244_118208354_118210934_118211036_118245786
ES_00009307	chr11	-	345	1	FSM	ENSMUSG00000076433.5	ENSMUST00000168100.2	1602	1	689	568	689	-568	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTCAGAGTACCCCAGAT	NA	False	NA	NA	False	NA	NA	NA	118224153	118223808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118223800_118224200
ES_00009308	chr11	-	2176	6	FSM	ENSMUSG00000033880.12	ENSMUST00000043722.10	2330	6	158	-4	-62	4	multi-exon	TRUE	canonical	1	1	junction_1	1.85472369909914	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTCATCCATACATGG	9864	False	NA	NA	False	ATTAAA	-22	NA	118292760	118283572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118284949_118287416_118287670_118288946_118289079_118289205_118289398_118290553_118290628_118292611
ES_00009309	chr11	-	2874	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	0	-1	0	1	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTGTCTATGTTGGCT	8992	False	NA	0	True	AATAAA	-18	NA	118309878	118297113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
ES_00009310	chr11	-	4183	4	FSM	ENSMUSG00000025575.15	ENSMUST00000017620.10	4182	4	0	-1	0	1	multi-exon	FALSE	canonical	3	163	junction_2	3.68178700572909	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTGTCTATGTTGGCT	8958	False	NA	0	True	AATAAA	-18	NA	118309912	118297113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399
ES_00009314	chr11	-	5179	5	FSM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	7	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTTTCTTTTATGT	NA	False	NA	NA	False	AATAAA	-17	NA	118977047	118968398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118973128_118973342_118973410_118975388_118975455_118976582_118976627_118976774
ES_00009315	chr11	-	1509	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ES_00009319	chr11	-	3663	1	FSM	ENSMUSG00000109408.2	ENSMUST00000208152.2	4381	1	152	566	152	-566	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGAATGGGAGACCCCTA	NA	False	NA	NA	False	NA	NA	NA	119371106	119367443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119367400_119371100
ES_00009320	chr11	-	5217	5	FSM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	7.08872343937891	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTCATTGGATTCTT	NA	False	NA	NA	False	AGTAAA	-15	NA	119438579	119429544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119433521_119434007_119434188_119435417_119435663_119437477_119437686_119437971
ES_00009321	chr11	-	3588	26	FSM	ENSMUSG00000039781.15	ENSMUST00000106229.8	3581	26	0	-7	0	7	multi-exon	FALSE	non_canonical	0	0	junction_17	26.0287840668749	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGTCTTTCTCTA	NA	False	NA	-2	True	AGTAAA	-34	NA	119977653	119955248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119955536_119955610_119955672_119956213_119956378_119956463_119956642_119956736_119956880_119957519_119957595_119957746_119957865_119957955_119958064_119958771_119958974_119959523_119959627_119961114_119961232_119961310_119961437_119961617_119961729_119962184_119962362_119962702_119962886_119963235_119963331_119963663_119963801_119963948_119964071_119964566_119964685_119966389_119966537_119966914_119967029_119967744_119967867_119968152_119968268_119972069_119972165_119974621_119974816_119977477
ES_00009323	chr11	-	2738	13	NIC	ENSMUSG00000025377.15	novel	2770	13	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	21.0797098335501	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989509	119981356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987390_119987501_119987703_119987796_119988334_119988408_119989451
ES_00009325	chr11	-	4563	16	FSM	ENSMUSG00000061306.17	ENSMUST00000045402.14	4554	16	0	-9	0	9	multi-exon	FALSE	canonical	3	392	junction_1	66.2227218474814	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTATTAATGTTTCCT	4996	False	NA	NA	False	ATTAAA	-14	NA	120042172	119994776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00009326	chr11	-	4587	17	FSM	ENSMUSG00000061306.17	ENSMUST00000103018.11	4578	17	0	-9	0	9	multi-exon	FALSE	canonical	3	16	junction_3	179.74077471111	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTATTAATGTTTCCT	4996	False	NA	NA	False	ATTAAA	-14	NA	120042172	119994776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00009329	chr11	-	874	7	FSM	ENSMUSG00000061306.17	ENSMUST00000150315.8	874	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	194.397145040764	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTGGTCACCGCCTTCTA	5055	False	NA	NA	False	NA	NA	NA	120042113	120025632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120025709_120028682_120028808_120029811_120029919_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00009331	chr11	-	406	2	Intergenic	novelGene_806	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	74	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCAAAAACGATTAGTG	2141	False	NA	NA	False	NA	NA	NA	120045027	120044552	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_120044909_120044977
ES_00009334	chr11	-	1961	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	0	-9	0	9	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGTTTGGCACAGGGCT	NA	False	NA	-12	True	AATAAA	-27	NA	120239368	120236506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ES_00009339	chr11	-	3193	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	19.8612470857816	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGTGTTGTGCTCTG	NA	False	NA	-3	True	NA	NA	NA	120269590	120260387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
ES_00009340	chr11	-	2621	4	FSM	ENSMUSG00000025384.16	ENSMUST00000154826.2	2934	4	0	313	0	-313	multi-exon	FALSE	canonical	3	20	junction_3	19.3964487013015	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCATTTGAGACACTTA	NA	False	NA	NA	False	NA	NA	NA	120269562	120264164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120265478_120266242_120266400_120267531_120268488_120269367
ES_00009342	chr11	-	4121	17	FSM	ENSMUSG00000039703.16	ENSMUST00000044271.15	4121	17	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_10	42.5235229020362	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCTCCCAGTGCATT	NA	False	NA	-8	True	AATAAA	-16	NA	120328534	120271195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120273453_120274122_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873_120323955_120328324
ES_00009343	chr11	-	4025	16	FSM	ENSMUSG00000039703.16	ENSMUST00000103017.4	4025	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	114.245816845374	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCTCCCAGTGCATT	NA	False	NA	-8	True	AATAAA	-16	NA	120328534	120271195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120273453_120274122_120274226_120275368_120275486_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873_120323955_120328324
ES_00009344	chr11	-	842	8	FSM	ENSMUSG00000039703.16	ENSMUST00000132519.2	842	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	144.570299261541	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGGCTATGCTAAGGAG	NA	False	NA	NA	False	NA	NA	NA	120312283	120295090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120295193_120299598_120299726_120300437_120300510_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190
ES_00009346	chr11	-	1303	5	NNC	ENSMUSG00000057594.13	novel	911	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	70.9048658414922	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGGCCTGGAGAGA	NA	False	NA	NA	False	CATAAA	-26	NA	120358246	120355691	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358066_120358187
ES_00009347	chr11	-	1565	3	FSM	ENSMUSG00000057594.13	ENSMUST00000154136.8	760	3	61	-866	0	-22	multi-exon	FALSE	canonical	3	167	junction_2	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-4	NA	120358246	120355713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120356926_120357479_120357594_120358007
ES_00009348	chr11	-	911	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCCCACCAAGAAGTTG	NA	False	NA	62	True	NA	NA	NA	120358426	120356263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
ES_00009353	chr11	-	2973	12	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-88	43242	intron_retention	FALSE	non_canonical	0	0	junction_1	563.12376984575	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAGAGAGAAATAAAT	3279	False	NA	NA	False	NA	NA	NA	120464167	120407881	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120407911_120451128_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
ES_00009354	chr11	-	1204	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	3	-2	3	2	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCATGGCAGTCTGTCA	NA	False	NA	-22	True	AATAAA	-19	NA	120440550	120433711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
ES_00009356	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
ES_00009357	chr11	-	2155	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	0	-5	0	0	multi-exon	TRUE	canonical	3	51	junction_5	1338.58961597646	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472206	120468929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
ES_00009360	chr11	-	1903	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	2	-24	2	24	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTGGAACCGGTCCAC	NA	False	NA	18	True	AATAAA	-40	NA	120508760	120500888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ES_00009361	chr11	-	1486	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGAGGCGTGTTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	120508751	120501242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ES_00009368	chr11	-	1755	9	FSM	ENSMUSG00000025138.15	ENSMUST00000153532.8	1755	9	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	11.6344047978399	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515795	120509197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ES_00009371	chr11	-	1747	9	ISM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	45	1	0	-1	intron_retention	FALSE	canonical	2	56	junction_8	11.0113577727726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCCCGATGACTG	NA	False	NA	-2	True	ATTAAA	-14	NA	120515795	120509198	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498
ES_00009373	chr11	-	8835	3	FSM	ENSMUSG00000025138.15_ENSMUSG00000051510.14	ENSMUST00000106182.8	1104	3	-3842	-3889	-1039	-1	multi-exon	FALSE	canonical	3	29	junction_2	164.5	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGTGGTATTTCTTTGA	6319	False	NA	-2	True	AATAAA	-15	NA	120525465	120515943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120520563_120520643_120520708_120521313
ES_00009375	chr11	-	2914	8	FSM	ENSMUSG00000025140.16	ENSMUST00000170556.8	2914	8	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_1	338.819740166553	1896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTGGCTAGAACTGTT	NA	False	NA	NA	False	NA	NA	NA	120534496	120526537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984
ES_00009376	chr11	-	1861	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ES_00009379	chr11	-	2224	11	FSM	ENSMUSG00000042988.11	ENSMUST00000106177.8	2212	11	0	-12	0	12	multi-exon	FALSE	canonical	3	96	junction_10	9.96042167782067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAACCTTGTTTGTTTG	9796	False	NA	NA	False	ATTAAA	-33	NA	120551432	120544601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
ES_00009380	chr11	-	2019	12	FSM	ENSMUSG00000042988.11	ENSMUST00000106178.9	2012	12	0	-7	0	7	multi-exon	FALSE	canonical	2	9	junction_11	31.1782399219087	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACCCTGAACCTTGTTT	9573	False	NA	NA	False	ATTAAA	-28	NA	120551655	120544606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551614
ES_00009382	chr11	-	2233	13	NNC	ENSMUSG00000042988.11	novel	2012	12	NA	NA	-778	4	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	31.8612443085465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTCACCCTGAACCTTG	9926	False	NA	NA	False	ATTAAA	-25	NA	120552779	120544609	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551946_120552181_120552755
ES_00009383	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
ES_00009384	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
ES_00009385	chr11	-	692	4	FSM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	156.895577446346	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120602133_120602215_120602305_120602528_120602722_120604518
ES_00009386	chr11	-	848	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	-18	0	18	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACCCAAAGCAGGTGTT	6916	False	NA	14	True	NA	NA	NA	120618069	120616206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ES_00009387	chr11	-	910	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	-18	0	18	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACCCAAAGCAGGTGTT	9984	False	NA	14	True	NA	NA	NA	120618107	120616206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ES_00009388	chr11	-	914	7	FSM	ENSMUSG00000039450.12	ENSMUST00000122883.2	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	12.5786415094088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCGCCCCTGCAATAAA	6930	False	NA	-60	True	NA	NA	NA	120618055	120616280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ES_00009389	chr11	-	2028	9	NNC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	5	2	at_least_one_novel_splicesite	TRUE	canonical	3	94	junction_1	30.589009464185	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTCCTCTTGTCATAC	NA	False	NA	-2	True	AGTAAA	-21	NA	120675006	120671569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120672101_120672167_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
ES_00009390	chr11	-	2469	6	FSM	ENSMUSG00000025158.8	ENSMUST00000123273.2	2467	6	0	-2	0	2	multi-exon	FALSE	canonical	3	152	junction_3	12.2081939696255	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTCCTCTTGTCATAC	NA	False	NA	-2	True	AGTAAA	-21	NA	120675011	120671569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120672730_120672804_120672891_120673208_120673987_120674093_120674197_120674560_120674610_120674718
ES_00009391	chr11	-	2122	8	FSM	ENSMUSG00000025158.8	ENSMUST00000026156.8	2118	8	0	-4	0	2	multi-exon	FALSE	canonical	3	122	junction_3	23.1137382947714	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTCCTCTTGTCATAC	NA	False	NA	-2	True	AGTAAA	-21	NA	120675033	120671569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
ES_00009392	chr11	-	1987	9	NNC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	-5	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	56.9868405862266	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTAGTGTGGCTCCTCTT	NA	False	NA	-9	True	AGTAAA	-14	NA	120675038	120671576	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120672035_120672167_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
ES_00009393	chr11	-	1909	14	FSM	ENSMUSG00000025155.16	ENSMUST00000167023.8	1909	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_13	260.320262471546	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGAGATCTCTAGTG	NA	False	NA	-17	True	AATAAA	-16	NA	120687221	120680027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
ES_00009394	chr11	-	2188	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	92	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	197.871304777721	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGGCAATGATCAACTT	NA	False	NA	76	True	AATACA	-19	NA	120687203	120679934	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
ES_00009395	chr11	-	1814	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	178.060258399514	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGAGATCTCTAGTG	NA	False	NA	-17	True	AATAAA	-16	NA	120687202	120680027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
ES_00009396	chr11	-	1816	14	NIC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	60	junction_5	231.283555057935	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	-19	True	AATAAA	-14	NA	120687202	120680029	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
ES_00009397	chr11	-	2100	14	NNC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	84	junction_13	257.446748673132	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	-19	True	AATAAA	-14	NA	120687203	120680029	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686757
ES_00009398	chr11	-	2064	14	NIC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	1	27	junction_12	312.202805426179	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	-19	True	AATAAA	-14	NA	120687203	120680029	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685805_120686302_120686550_120686764
ES_00009401	chr11	-	10050	43	FSM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	0	0	0	0	multi-exon	TRUE	canonical	3	375	junction_39	98.8392726301593	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTAAATAACTGCTCTG	NA	False	NA	NA	False	ATTAAA	-29	NA	120715373	120696671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
ES_00009402	chr11	-	1177	6	FSM	ENSMUSG00000048445.7	ENSMUST00000150640.2	1164	6	0	-13	0	0	multi-exon	FALSE	canonical	0	0	junction_5	8.07465169527454	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	NA	False	NA	2	True	ATTAAA	-28	NA	120764497	120717354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120761873_120762089_120764411
ES_00009403	chr11	-	3403	19	FSM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	6.51399253648882	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	1471	False	NA	2	True	ATTAAA	-28	NA	120823698	120717354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
ES_00009404	chr11	-	1848	9	FSM	ENSMUSG00000025162.19	ENSMUST00000239115.2	1823	9	-25	0	-25	0	multi-exon	FALSE	canonical	3	23	junction_1	191.835052844885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATGCTATACTTCAGCT	751	False	NA	NA	False	AATAAA	-45	NA	120882181	120849815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120850122_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ES_00009405	chr11	-	3683	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	-8	0	8	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTGGTCTTTCTT	776	False	NA	-3	True	AATAAA	-30	NA	120882156	120852566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ES_00009406	chr11	-	3500	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	1014	False	NA	-11	True	AATAAA	-22	NA	120881918	120852574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ES_00009407	chr11	-	1028	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	-63	17	-63	-17	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATACATTAACAAAAGCA	7833	False	NA	NA	False	AATAAA	-5	NA	120930307	120927589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
ES_00009408	chr11	-	497	1	FSM	ENSMUSG00000082510.2	ENSMUST00000120433.2	981	1	670	-186	670	186	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTAATCTAAAACTATTT	NA	False	NA	NA	False	NA	NA	NA	120997283	120996786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120996800_120997300
ES_00009409	chr11	-	1705	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	341	0	341	0	multi-exon	FALSE	canonical	3	61	junction_1	13.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTGCAGTCTCCTCAT	NA	False	NA	0	True	AATAAA	-19	NA	121009162	121007040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_121008523_121008652_121008727_121009013
ES_00009410	chr11	-	1308	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	3	-3	3	3	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCTGGGCGCTGCTCG	NA	False	NA	-4	True	AGTAAA	-44	NA	121095534	121068413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
ES_00009412	chr11	-	2236	7	FSM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	3	0	3	0	multi-exon	FALSE	canonical	2	10	junction_6	22.8284666346404	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120128	121113413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121120038
ES_00009414	chr11	-	2321	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245271	121218049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ES_00009415	chr11	-	2248	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	0	65	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGTACCTGCTGCAGG	NA	False	NA	66	True	NA	NA	NA	121245167	121217984	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ES_00009417	chr11	-	1828	6	FSM	ENSMUSG00000025170.14	ENSMUST00000106107.3	1861	6	13	20	-8	-20	multi-exon	FALSE	canonical	0	0	junction_1	0.4	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTTGCTCCTCTCTTGA	NA	False	NA	NA	False	AATAAA	-4	NA	121279064	121246970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_121248135_121248685_121248909_121249600_121249679_121250385_121250447_121254329_121254391_121278823
ES_00009418	chr11	-	2864	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGACTATAACATTCATA	NA	False	NA	2	True	AATAAA	-26	NA	121563979	121507022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
ES_00009419	chr11	-	1406	13	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	47	-1415	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_12	22.287733297838	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACACTGAGGGGACACAT	NA	False	NA	NA	False	AGTAAA	-32	NA	121563932	121508437	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563806
ES_00009421	chr11	-	202	1	Intergenic	novelGene_808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAATACAATTTATACTT	NA	False	NA	NA	False	NA	NA	NA	121781809	121781607	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_121781600_121781800
ES_00009424	chr11	-	425	3	Intergenic	novelGene_809	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	175	junction_1	12.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGGTGTCTGATTTATG	NA	False	NA	NA	False	NA	NA	NA	121816144	121798627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_121798837_121799014_121799142_121816055
ES_00009425	chr11	-	3006	4	NNC	ENSMUSG00000082831.2	novel	1177	3	NA	NA	66	27039	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	16.9771087709958	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTAAGTCCTGAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	121861445	121831997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_121833463_121833546_121834966_121836089_121836151_121861384
ES_00009426	chr11	-	353	4	Intergenic	novelGene_810	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	17.326921891156	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGTGGTAAAGCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	121847575	121834922	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121847453
ES_00009427	chr11	+	209	1	Intergenic	novelGene_433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAAGTGCAGGCAATA	NA	False	NA	NA	False	AAAACA	-7	NA	3277887	3278096	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_3277900_3278100
ES_00009428	chr11	+	209	1	Intergenic	novelGene_435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCACGCCTTTAATCCCA	NA	False	NA	NA	False	NA	NA	NA	3431346	3431555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_3431300_3431600
ES_00009429	chr11	+	220	1	Intergenic	novelGene_440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCAGATTTCTATGGC	NA	False	NA	NA	False	NA	NA	NA	4456247	4456467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_4456200_4456500
ES_00009430	chr11	+	205	1	Intergenic	novelGene_442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAGTTTGCAAAAATGTA	7712	False	NA	NA	False	TTTAAA	-1	NA	4645473	4645678	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_4645500_4645700
ES_00009431	chr11	+	204	1	Intergenic	novelGene_443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTCTTTTTTTTAGCT	NA	False	NA	NA	False	NA	NA	NA	4649192	4649396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_4649200_4649400
ES_00009432	chr11	+	206	1	Intergenic	novelGene_445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAGGTCTTTCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	5443472	5443678	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_5443500_5443700
ES_00009434	chr11	+	204	1	Intergenic	novelGene_447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1052	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAATTTTTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	5700275	5700479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_5700300_5700500
ES_00009438	chr11	+	798	1	Intergenic	novelGene_458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGACCCCCGACGTGGG	NA	False	NA	NA	False	NA	NA	NA	6698623	6699421	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6698600_6699400
ES_00009439	chr11	+	362	1	Intergenic	novelGene_459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGCTCCTCACTGCTGA	NA	False	NA	NA	False	NA	NA	NA	6708485	6708847	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6708500_6708800
ES_00009440	chr11	+	364	1	Intergenic	novelGene_460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATATGCAGGGATCCATTC	NA	False	NA	NA	False	NA	NA	NA	7609626	7609990	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_7609600_7610000
ES_00009441	chr11	+	226	1	Intergenic	novelGene_461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATAAAGGGGTGATAT	NA	False	NA	NA	False	NA	NA	NA	7761406	7761632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_7761400_7761600
ES_00009442	chr11	+	1179	1	Intergenic	novelGene_463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AAGAAA	-17	NA	8288057	8289236	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8288100_8289200
ES_00009443	chr11	+	1066	1	Intergenic	novelGene_465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGCAGGAAACTGCAGTACG	NA	False	NA	NA	False	NA	NA	NA	8788515	8789581	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8788500_8789600
ES_00009445	chr11	+	343	1	Intergenic	novelGene_468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTAGGAGGGGAACCAG	NA	False	NA	NA	False	NA	NA	NA	8835358	8835701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8835400_8835700
ES_00009446	chr11	+	1117	1	Intergenic	novelGene_470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGGAGCTGGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	9920881	9921998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_9920900_9922000
ES_00009447	chr11	+	3923	1	Intergenic	novelGene_471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACACCTGCTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	9922380	9926303	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_9922400_9926300
ES_00009448	chr11	+	243	1	Intergenic	novelGene_472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTTCTTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	13615596	13615839	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_13615600_13615800
ES_00009452	chr11	+	218	1	Intergenic	novelGene_475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGAATAGCTAGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	17899564	17899782	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_17899600_17899800
ES_00009455	chr11	+	228	1	Intergenic	novelGene_479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTCTTAACGAGTGCC	NA	False	NA	NA	False	NA	NA	NA	20001642	20001870	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_20001600_20001900
ES_00009456	chr11	+	235	1	Intergenic	novelGene_484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1787	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACCACACAGGACTGTT	NA	False	NA	NA	False	NA	NA	NA	21632392	21632627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_21632400_21632600
ES_00009458	chr11	+	1174	1	Intergenic	novelGene_490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTAAGTTAGACCTTGT	NA	False	NA	NA	False	NA	NA	NA	23222293	23223467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_23222300_23223500
ES_00009460	chr11	+	210	1	Intergenic	novelGene_491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGTAGAGGTGTTGAAAA	3106	False	NA	NA	False	AAGAAA	-6	NA	23310056	23310266	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_23310100_23310300
ES_00009462	chr11	+	291	1	Intergenic	novelGene_492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCTATTTCAATTTGGG	NA	False	NA	NA	False	NA	NA	NA	23468241	23468532	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_23468200_23468500
ES_00009464	chr11	+	205	1	Intergenic	novelGene_494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAACCCTGCAATTGGACA	2282	False	NA	NA	False	NA	NA	NA	23773904	23774109	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_23773900_23774100
ES_00009465	chr11	+	331	1	Intergenic	novelGene_495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAACCCCATTGGCCCAAG	NA	False	NA	NA	False	NA	NA	NA	27125041	27125372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_27125000_27125400
ES_00009466	chr11	+	667	1	Intergenic	novelGene_496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATTAAGATAATTATAAG	NA	False	NA	NA	False	NA	NA	NA	27127271	27127938	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_27127300_27127900
ES_00009467	chr11	+	382	1	Intergenic	novelGene_498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTCGAGCTGTAAGAGA	NA	False	NA	NA	False	NA	NA	NA	27565724	27566106	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_27565700_27566100
ES_00009468	chr11	+	444	1	Intergenic	novelGene_499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAATCCAATAATCAAAAT	641	False	NA	NA	False	NA	NA	NA	27927682	27928126	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_27927700_27928100
ES_00009470	chr11	+	251	1	Intergenic	novelGene_502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTACTTGGGAGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	29616740	29616991	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_29616700_29617000
ES_00009471	chr11	+	231	1	Intergenic	novelGene_504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATACAAACAAACAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	29787889	29788120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_29787900_29788100
ES_00009472	chr11	+	211	1	Intergenic	novelGene_510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAATGTATTAAAGGGG	9439	False	NA	NA	False	NA	NA	NA	32235952	32236163	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_32236000_32236200
ES_00009474	chr11	+	209	1	Intergenic	novelGene_513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTTCAAGGACAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	33201846	33202055	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_33201800_33202100
ES_00009475	chr11	+	556	1	Intergenic	novelGene_514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGGGCCTGACACACCAG	NA	False	NA	NA	False	NA	NA	NA	33377851	33378407	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_33377900_33378400
ES_00009476	chr11	+	256	1	Intergenic	novelGene_519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTCAGACATTCCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	33511903	33512159	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_33511900_33512200
ES_00009477	chr11	+	254	1	Intergenic	novelGene_520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1447	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAATGCAAAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	35621876	35622130	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_35621900_35622100
ES_00009479	chr11	+	201	1	Intergenic	novelGene_524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTGAGCCATCTCTTC	3181	False	NA	NA	False	NA	NA	NA	43601859	43602060	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_43601900_43602100
ES_00009480	chr11	+	237	1	Intergenic	novelGene_525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTGTAAAATTAGTGAGT	NA	False	NA	NA	False	AAAAAG	-34	NA	43710900	43711137	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_43710900_43711100
ES_00009481	chr11	+	371	1	Intergenic	novelGene_529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACGGTCCTCTACCCCTG	NA	False	NA	NA	False	NA	NA	NA	45629478	45629849	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_45629500_45629800
ES_00009482	chr11	+	217	1	Intergenic	novelGene_530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTTGTTTTAACAGTG	7449	False	NA	NA	False	NA	NA	NA	45911665	45911882	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_45911700_45911900
ES_00009484	chr11	+	230	1	Intergenic	novelGene_532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCACCCCTTCTTTCTTT	NA	False	NA	NA	False	ATTAAA	-8	NA	48664787	48665017	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_48664800_48665000
ES_00009486	chr11	+	1049	1	Intergenic	novelGene_534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTCATACCCAGAATCT	NA	False	NA	NA	False	NA	NA	NA	49342436	49343485	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_49342400_49343500
ES_00009487	chr11	+	9089	1	Intergenic	novelGene_535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCGTCATTAAATCTTTC	NA	False	NA	NA	False	NA	NA	NA	51126811	51135900	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_51126800_51135900
ES_00009490	chr11	+	379	1	Intergenic	novelGene_543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAAACCATTTTTGTGG	NA	False	NA	NA	False	ATTAAA	-13	NA	53092178	53092557	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53092200_53092600
ES_00009493	chr11	+	208	1	Intergenic	novelGene_550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGTAAGCTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	53444584	53444792	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53444600_53444800
ES_00009494	chr11	+	241	1	Intergenic	novelGene_553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATAGTTGATCCCATCC	NA	False	NA	NA	False	NA	NA	NA	54689589	54689830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_54689600_54689800
ES_00009497	chr11	+	327	1	Intergenic	novelGene_555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAATGTAGTCTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	56352277	56352604	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_56352300_56352600
ES_00009499	chr11	+	260	1	Intergenic	novelGene_565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTGGGTGGAGATAAGAG	6368	False	NA	NA	False	NA	NA	NA	57813699	57813959	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_57813700_57814000
ES_00009500	chr11	+	211	1	Intergenic	novelGene_570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	611	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGAGATTGGTTA	3302	False	NA	NA	False	NA	NA	NA	60731793	60732004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_60731800_60732000
ES_00009501	chr11	+	221	1	Intergenic	novelGene_571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTTTTCTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61205518	61205739	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_61205500_61205700
ES_00009502	chr11	+	249	1	Intergenic	novelGene_573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCATTTTCTTAACTGAG	NA	False	NA	NA	False	NA	NA	NA	61393882	61394131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_61393900_61394100
ES_00009503	chr11	+	201	1	Intergenic	novelGene_574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTGCTTCCACTCTTGT	NA	False	NA	NA	False	AAAAAG	-2	NA	61726343	61726544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_61726300_61726500
ES_00009504	chr11	+	475	1	Intergenic	novelGene_578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTACACATGCACCCACT	NA	False	NA	NA	False	NA	NA	NA	62639922	62640397	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_62639900_62640400
ES_00009506	chr11	+	237	1	Intergenic	novelGene_582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAACAGATCTTAAGAGAG	9047	False	NA	NA	False	NA	NA	NA	68512144	68512381	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_68512100_68512400
ES_00009507	chr11	+	214	1	Intergenic	novelGene_584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTCACCAGAAATGACAGA	NA	False	NA	NA	False	NA	NA	NA	69284849	69285063	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69284800_69285100
ES_00009508	chr11	+	205	1	Intergenic	novelGene_586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2640	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACACAAGGTGCTGTCT	2562	False	NA	NA	False	NA	NA	NA	69398705	69398910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69398700_69398900
ES_00009509	chr11	+	247	1	Intergenic	novelGene_587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACTGATTGCTCTACCA	9112	False	NA	NA	False	NA	NA	NA	69432448	69432695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69432400_69432700
ES_00009510	chr11	+	241	1	Intergenic	novelGene_593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	588	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCAGCTGCCTTCCTAA	NA	False	NA	NA	False	AAAAAG	-34	NA	69614379	69614620	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69614400_69614600
ES_00009513	chr11	+	205	1	Intergenic	novelGene_594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTACTTACGTGTATG	NA	False	NA	NA	False	AATATA	-41	NA	70249967	70250172	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_70250000_70250200
ES_00009514	chr11	+	285	1	Intergenic	novelGene_595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	70254672	70254957	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_70254700_70255000
ES_00009515	chr11	+	873	1	Intergenic	novelGene_597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGCTTTTTTTTAATG	7234	False	NA	NA	False	ATTAAA	-3	NA	70518329	70519202	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_70518300_70519200
ES_00009516	chr11	+	227	1	Intergenic	novelGene_603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTCATTGTGCAGTG	6959	False	NA	NA	False	NA	NA	NA	72321425	72321652	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_72321400_72321700
ES_00009517	chr11	+	259	1	Intergenic	novelGene_606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAAGGTTTTTCTACAA	1180	False	NA	NA	False	NA	NA	NA	72608579	72608838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_72608600_72608800
ES_00009519	chr11	+	202	1	Intergenic	novelGene_608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTCACTTTTTTAACAGG	NA	False	NA	NA	False	NA	NA	NA	73382717	73382919	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_73382700_73382900
ES_00009520	chr11	+	319	1	Intergenic	novelGene_609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAAAGTTTAGGTATTG	NA	False	NA	NA	False	NA	NA	NA	73760092	73760411	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_73760100_73760400
ES_00009521	chr11	+	224	1	Intergenic	novelGene_610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGCCCCAGTCACCAAT	NA	False	NA	NA	False	NA	NA	NA	74608872	74609096	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_74608900_74609100
ES_00009522	chr11	+	395	1	Intergenic	novelGene_615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCACCACCCCACCACC	NA	False	NA	NA	False	NA	NA	NA	75369383	75369778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75369400_75369800
ES_00009523	chr11	+	287	1	Intergenic	novelGene_617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGACCTCTTTTCTTAAAC	3574	False	NA	NA	False	NA	NA	NA	75537066	75537353	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75537100_75537400
ES_00009524	chr11	+	297	1	Intergenic	novelGene_619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGATTATATTTGCTT	2022	False	NA	NA	False	NA	NA	NA	75600923	75601220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75600900_75601200
ES_00009525	chr11	+	211	1	Intergenic	novelGene_622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTTTATTTTGATTTG	NA	False	NA	NA	False	NA	NA	NA	76525971	76526182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_76526000_76526200
ES_00009526	chr11	+	267	1	Intergenic	novelGene_626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGAAGTCTCTTGGTT	NA	False	NA	NA	False	ACTAAA	-3	NA	77554177	77554444	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_77554200_77554400
ES_00009531	chr11	+	206	1	Intergenic	novelGene_635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAGTTACTTTCAAGGA	34	False	NA	NA	False	NA	NA	NA	78323014	78323220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_78323000_78323200
ES_00009532	chr11	+	238	1	Intergenic	novelGene_640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGCCTTTATAAGCATC	NA	False	NA	NA	False	NA	NA	NA	78898148	78898386	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_78898100_78898400
ES_00009535	chr11	+	203	1	Intergenic	novelGene_652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCTCAAACTCTTAATCT	NA	False	NA	NA	False	NA	NA	NA	80041658	80041861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80041700_80041900
ES_00009537	chr11	+	366	1	Intergenic	novelGene_659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAATATCTCTCCCAAA	NA	False	NA	NA	False	NA	NA	NA	80357109	80357475	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80357100_80357500
ES_00009538	chr11	+	204	1	Intergenic	novelGene_663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCGTATTGGGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	83156785	83156989	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_83156800_83157000
ES_00009540	chr11	+	206	1	Intergenic	novelGene_670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTAATCTTTTTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	85191143	85191349	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_85191100_85191300
ES_00009541	chr11	+	232	1	Intergenic	novelGene_672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTTGAATTTGTTGA	NA	False	NA	NA	False	NA	NA	NA	85393981	85394213	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_85394000_85394200
ES_00009542	chr11	+	203	1	Intergenic	novelGene_673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATGCAATACTGTATGC	NA	False	NA	NA	False	NA	NA	NA	85404346	85404549	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_85404300_85404500
ES_00009543	chr11	+	218	1	Intergenic	novelGene_674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTACCTTTTCAACATAG	NA	False	NA	NA	False	NA	NA	NA	86072727	86072945	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_86072700_86072900
ES_00009544	chr11	+	209	1	Intergenic	novelGene_675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTGTTATAAGTACTT	NA	False	NA	NA	False	NA	NA	NA	86423228	86423437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_86423200_86423400
ES_00009546	chr11	+	210	1	Intergenic	novelGene_677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTGGGCTTTTAAGACC	NA	False	NA	NA	False	NA	NA	NA	86952075	86952285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_86952100_86952300
ES_00009548	chr11	+	203	1	Intergenic	novelGene_679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTCCATTTTCTATAAG	NA	False	NA	NA	False	NA	NA	NA	87322612	87322815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87322600_87322800
ES_00009549	chr11	+	203	1	Intergenic	novelGene_684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCTTTAACATACAATT	NA	False	NA	NA	False	NA	NA	NA	87387928	87388131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87387900_87388100
ES_00009551	chr11	+	235	1	Intergenic	novelGene_688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	441	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCAAAGGTCAGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	94093681	94093916	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_94093700_94093900
ES_00009552	chr11	+	220	1	Intergenic	novelGene_689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGGTTTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	94542306	94542526	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_94542300_94542500
ES_00009553	chr11	+	347	1	Intergenic	novelGene_693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGGGTTTTTAAATTGA	NA	False	NA	NA	False	NA	NA	NA	95203053	95203400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95203100_95203400
ES_00009554	chr11	+	208	1	Intergenic	novelGene_696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAGAGAAAATGATCTC	NA	False	NA	NA	False	NA	NA	NA	95546496	95546704	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95546500_95546700
ES_00009555	chr11	+	310	1	Intergenic	novelGene_697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAATGTCTTAACGTCT	NA	False	NA	NA	False	NA	NA	NA	95599576	95599886	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95599600_95599900
ES_00009556	chr11	+	220	1	Intergenic	novelGene_706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAGCCAACGGCATGGA	2159	False	NA	NA	False	NA	NA	NA	96605936	96606156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96605900_96606200
ES_00009559	chr11	+	202	1	Intergenic	novelGene_708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTCTTCCAAAGGTCCA	NA	False	NA	NA	False	NA	NA	NA	96722928	96723130	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96722900_96723100
ES_00009562	chr11	+	333	1	Intergenic	novelGene_718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGCTTATTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	97523820	97524153	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97523800_97524200
ES_00009563	chr11	+	522	1	Intergenic	novelGene_720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGAGAGCTTTTAATGCT	NA	False	NA	NA	False	NA	NA	NA	97538485	97539007	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97538500_97539000
ES_00009564	chr11	+	231	1	Intergenic	novelGene_724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATCATCTGATATATA	NA	False	NA	NA	False	NA	NA	NA	97737582	97737813	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97737600_97737800
ES_00009565	chr11	+	5687	1	Intergenic	novelGene_727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	803	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAGAAAAATCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97958385	97964072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97958400_97964100
ES_00009569	chr11	+	228	1	Intergenic	novelGene_734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAAACTCTTATGGTGG	NA	False	NA	NA	False	NA	NA	NA	100309021	100309249	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_100309000_100309200
ES_00009570	chr11	+	220	1	Intergenic	novelGene_736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAGACAAATGGGTATG	2762	False	NA	NA	False	NA	NA	NA	101047843	101048063	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101047800_101048100
ES_00009571	chr11	+	218	1	Intergenic	novelGene_737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTGGTTTTGACCCT	NA	False	NA	NA	False	NA	NA	NA	101231243	101231461	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101231200_101231500
ES_00009573	chr11	+	211	1	Intergenic	novelGene_739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAAGA	6004	False	NA	NA	False	NA	NA	NA	101329052	101329263	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101329100_101329300
ES_00009577	chr11	+	314	1	Intergenic	novelGene_744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTTCATTTACATTTC	7260	False	NA	NA	False	NA	NA	NA	102171113	102171427	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102171100_102171400
ES_00009579	chr11	+	209	1	Intergenic	novelGene_749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAACTCTCAGCTCATTC	3658	False	NA	NA	False	NA	NA	NA	102280477	102280686	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102280500_102280700
ES_00009580	chr11	+	208	1	Intergenic	novelGene_750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACAGGGGTGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	102635320	102635528	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102635300_102635500
ES_00009581	chr11	+	201	1	Intergenic	novelGene_751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATCTGACGCTCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	103296344	103296545	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_103296300_103296500
ES_00009582	chr11	+	215	1	Intergenic	novelGene_753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGAGGAGGTTAAGTCCA	9154	False	NA	NA	False	NA	NA	NA	103648135	103648350	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_103648100_103648400
ES_00009588	chr11	+	213	1	Intergenic	novelGene_759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAATAAATATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	106031913	106032126	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106031900_106032100
ES_00009590	chr11	+	207	1	Intergenic	novelGene_760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTACTGCTTTCTTTCTG	8575	False	NA	NA	False	NA	NA	NA	106524949	106525156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106524900_106525200
ES_00009591	chr11	+	202	1	Intergenic	novelGene_764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGACCCCGTCTTAAAAAC	9525	False	NA	NA	False	NA	NA	NA	106698196	106698398	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106698200_106698400
ES_00009593	chr11	+	234	1	Intergenic	novelGene_771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACAGAGAGGATGG	NA	False	NA	NA	False	AATATA	-19	NA	107332198	107332432	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107332200_107332400
ES_00009594	chr11	+	245	1	Intergenic	novelGene_772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTTGTTTGATCATAGA	3404	False	NA	NA	False	NA	NA	NA	107356544	107356789	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107356500_107356800
ES_00009595	chr11	+	227	1	Intergenic	novelGene_773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATCCACATTTCTAAAGC	NA	False	NA	NA	False	NA	NA	NA	107393730	107393957	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107393700_107394000
ES_00009596	chr11	+	394	1	Intergenic	novelGene_778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902554	108902948	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_108902600_108902900
ES_00009597	chr11	+	203	1	Intergenic	novelGene_779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGCCACTCTTATTCAA	NA	False	NA	NA	False	NA	NA	NA	109198000	109198203	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_109198000_109198200
ES_00009598	chr11	+	225	1	Intergenic	novelGene_782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCTGACACTTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	114456698	114456923	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_114456700_114456900
ES_00009599	chr11	+	263	1	Intergenic	novelGene_792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	366	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGCTACAATTTATATC	5313	False	NA	NA	False	NA	NA	NA	115445860	115446123	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115445900_115446100
ES_00009602	chr11	+	225	1	Intergenic	novelGene_802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCAACTCATATAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	117475590	117475815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_117475600_117475800
ES_00009603	chr11	+	219	1	Intergenic	novelGene_804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTTCTCAAAAAACTGTT	7685	False	NA	NA	False	NA	NA	NA	119097071	119097290	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_119097100_119097300
ES_00009605	chr11	+	273	1	Intergenic	novelGene_807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	376	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATCCACTCAACATACT	4977	False	NA	NA	False	NA	NA	NA	120996402	120996675	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_120996400_120996700
ES_00009609	chr11	+	1847	5	FSM	ENSMUSG00000020454.18	ENSMUST00000125224.8	2546	5	0	699	0	-699	multi-exon	FALSE	canonical	3	104	junction_1	64.0800280898815	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATACATACAGACAAAAAA	3844	False	NA	NA	False	NA	NA	NA	3152662	3171632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243
ES_00009610	chr11	+	1912	10	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	50.9373859159519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTATTCTGAGCAATTTGG	3880	False	NA	NA	False	AATAAA	-13	NA	3152698	3180182	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868
ES_00009611	chr11	+	869	5	FSM	ENSMUSG00000020454.18	ENSMUST00000125637.8	869	5	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	74.0012668810474	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCCTCTAACCCCCTT	3915	False	NA	NA	False	NA	NA	NA	3152733	3170530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243
ES_00009612	chr11	+	510	2	FSM	ENSMUSG00000020453.18	ENSMUST00000142561.2	798	2	288	0	-5	0	multi-exon	FALSE	canonical	2	5	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGCGGCGGACCCCTCC	5175	False	NA	NA	False	NA	NA	NA	3239161	3240192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3239348_3239868
ES_00009614	chr11	+	4478	4	NNC	ENSMUSG00000020453.18	novel	3118	4	NA	NA	-348	569	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	178.430814478765	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTTTTCTTTTTCTT	5658	False	NA	3	True	AAGAAA	-7	NA	3239644	3259652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_3241885_3243279_3243344_3249033_3249206_3257650
ES_00009615	chr11	+	611	5	FSM	ENSMUSG00000034614.15	ENSMUST00000093399.11	1098	5	105	382	105	-97	multi-exon	FALSE	canonical	2	3	junction_1	5.02493781056044	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGTCCTTTCTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	3280912	3283582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504
ES_00009616	chr11	+	381	1	ISM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	11293	897	7313	69	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAAGGTGGCCTCAGTC	344	False	NA	NA	False	NA	NA	NA	3291693	3292074	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_3291700_3292100
ES_00009617	chr11	+	1661	2	FSM	ENSMUSG00000034587.9	ENSMUST00000146456.2	1675	2	11	3	3	-3	multi-exon	FALSE	canonical	1	2	junction_1	0	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATATATAAGGACTGTAG	NA	False	NA	NA	False	AATAAA	-14	NA	3402482	3408335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3402571_3406762
ES_00009618	chr11	+	395	1	FSM	ENSMUSG00000084310.2	ENSMUST00000121615.2	838	1	490	-47	490	47	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCTTCTTCAATCTAGA	NA	False	NA	NA	False	NA	NA	NA	3579313	3579708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3579300_3579700
ES_00009619	chr11	+	251	2	Antisense	novelGene_ENSMUSG00000034493.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTTGATCAAACATAGCAA	NA	False	NA	NA	False	NA	NA	NA	3869996	3893260	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_3870023_3893035
ES_00009621	chr11	+	252	2	Antisense	novelGene_ENSMUSG00000034493.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTTGATCAAACATAGCAA	NA	False	NA	NA	False	NA	NA	NA	3869996	3893260	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_3870023_3893034
ES_00009622	chr11	+	392	1	FSM	ENSMUSG00000082816.2	ENSMUST00000122352.2	1003	1	135	476	135	-476	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGACCATGATCCATGC	6525	False	NA	NA	False	NA	NA	NA	3901848	3902240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3901800_3902200
ES_00009625	chr11	+	804	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	269.190192986297	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654634	4687669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_4654713_4672357_4672490_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ES_00009629	chr11	+	337	3	FSM	ENSMUSG00000009090.18	ENSMUST00000144426.2	361	3	24	0	24	0	multi-exon	FALSE	canonical	3	278	junction_1	11.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGTAGAAACCCAGTGGA	NA	False	NA	NA	False	NA	NA	NA	4959497	4965741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4959593_4962881_4962988_4965605
ES_00009634	chr11	+	1790	9	NNC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	85.0697324258164	164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049432	5056091	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_5049567_5049747_5049899_5050398_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055314_5055432_5055718_5055799
ES_00009635	chr11	+	515	2	ISM	ENSMUSG00000083844.9	ENSMUST00000131130.8	595	3	-6	1617	-6	-1253	5prime_fragment	FALSE	canonical	3	28	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCAGACTGTGAGTCA	NA	False	NA	9	True	NA	NA	NA	5712143	5730623	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_5712241_5730205
ES_00009636	chr11	+	4106	23	FSM	ENSMUSG00000020456.18	ENSMUST00000101554.9	4106	23	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	146.072267860866	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAGAACAACCACCT	NA	False	NA	-50	True	AAAAAG	-5	NA	6241665	6306578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6241770_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ES_00009637	chr11	+	455	2	Intergenic	novelGene_450	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	128	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAATAAATAAATAAATCT	6654	False	NA	NA	False	NA	NA	NA	6308197	6314533	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6308548_6314428
ES_00009638	chr11	+	335	1	Intergenic	novelGene_451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	6800	False	NA	NA	False	NA	NA	NA	6308343	6308678	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6308300_6308700
ES_00009639	chr11	+	4122	20	FSM	ENSMUSG00000041164.16	ENSMUST00000109787.8	4116	20	-6	0	-6	0	multi-exon	TRUE	canonical	3	65	junction_1	72.0482679083075	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTCAGGATATCCCT	4617	False	NA	15	True	AATAAA	-18	NA	6339067	6356158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ES_00009640	chr11	+	3869	20	NNC	ENSMUSG00000041164.16	novel	4199	20	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_9	92.2018440997883	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTGAGTCCTTCCTTTG	4961	False	NA	20	True	ATTAAA	-20	NA	6339411	6356074	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_6339514_6345124_6345289_6345567_6345679_6345757_6345873_6346327_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348657_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ES_00009642	chr11	+	324	1	FSM	ENSMUSG00000083693.2	ENSMUST00000117715.2	288	1	106	-142	106	142	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTGTACATAAAGTAAC	8112	False	NA	NA	False	NA	NA	NA	6403256	6403580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_6403300_6403600
ES_00009644	chr11	+	223	2	Intergenic	novelGene_456	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTTATTTTTAAAGTATA	9264	False	NA	NA	False	NA	NA	NA	6598243	6643885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6598273_6643691
ES_00009647	chr11	+	215	1	FSM	ENSMUSG00000081325.2	ENSMUST00000120534.2	792	1	-99	676	-99	-676	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AAAAAG	-45	NA	11386884	11387099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_11386900_11387100
ES_00009651	chr11	+	378	2	FSM	ENSMUSG00000020122.17	ENSMUST00000139722.2	446	2	68	0	68	0	multi-exon	FALSE	canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTACTGATCCAATTTC	NA	False	NA	NA	False	AAGAAA	-11	NA	16702297	16743744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_16702571_16743639
ES_00009653	chr11	+	942	1	Intergenic	novelGene_478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCAGCCAATCGTTGGC	NA	False	NA	NA	False	NA	NA	NA	19360776	19361718	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_19360800_19361700
ES_00009656	chr11	+	901	1	FSM	ENSMUSG00000082100.2	ENSMUST00000120291.2	1118	1	275	-58	275	58	mono-exon	FALSE	NA	NA	NA	NA	NA	425	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAACTCAAAGGATGGAAT	NA	False	NA	NA	False	NA	NA	NA	19670629	19671530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_19670600_19671500
ES_00009657	chr11	+	5791	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	-146	2	-65	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGCTCACAGTTTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	20493187	20603019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_20493761_20597801
ES_00009659	chr11	+	4469	22	NIC	ENSMUSG00000020128.16	novel	4323	23	NA	NA	-239	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	78.5193766977732	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAAAGGCAACTTTTT	NA	False	NA	19	True	AATAAA	-15	NA	21189041	21271122	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_21189372_21213198_21213355_21214629_21214872_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
ES_00009662	chr11	+	2199	17	ISM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	80039	409	-37309	-409	3prime_fragment	FALSE	canonical	2	7	junction_15	3.67795374495112	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATCAATAAAAATCTTCAC	1131	False	NA	NA	False	AAAAAG	-34	NA	21602273	21848580	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
ES_00009663	chr11	+	1226	3	FSM	ENSMUSG00000085803.2	ENSMUST00000148364.2	1257	3	3	28	3	-28	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGTTACAAATAAAATTGAA	NA	False	NA	NA	False	NA	NA	NA	22684040	22687909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_22684201_22685598_22685684_22686928
ES_00009665	chr11	+	993	2	FSM	ENSMUSG00000085665.2	ENSMUST00000128996.2	3105	2	-75	2187	-75	-2187	multi-exon	FALSE	canonical	3	13	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGTCCCATCACCTCC	6934	False	NA	NA	False	NA	NA	NA	23017922	23023387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_23018407_23022878
ES_00009666	chr11	+	11473	79	NIC	ENSMUSG00000056342.17	novel	11363	80	NA	NA	-125	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	28.4435754125342	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTATTTTTATTGACA	196	False	NA	15	True	AATAAA	-22	NA	23256769	23439744	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_23257017_23270660_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586_23311717_23313057_23313189_23313790_23314513_23317338_23317554_23320238_23320355_23320443_23320572_23323320_23323411_23325000_23325097_23327554_23327638_23331224_23331380_23332553_23332668_23334400_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524_23404677_23407797_23407847_23407931_23408037_23408114_23408160_23409123_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
ES_00009668	chr11	+	323	2	Antisense	novelGene_ENSMUSG00000020275.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGATTTCAGACTTAAA	NA	False	NA	NA	False	NA	NA	NA	23680435	23717783	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_23680626_23717650
ES_00009670	chr11	+	463	5	FSM	ENSMUSG00000020464.16	ENSMUST00000148173.2	459	5	-4	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	270.075336711815	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAATGCTGCTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	29080743	29085563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_29080919_29082844_29082906_29083855_29083927_29084599_29084706_29085513
ES_00009672	chr11	+	7292	30	ISM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	119	5249	0	754	5prime_fragment	TRUE	canonical	3	45	junction_8	9.8353871035569	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGAATTTGTATTTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	29323776	29455559	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851
ES_00009678	chr11	+	619	4	FSM	ENSMUSG00000020272.9	ENSMUST00000143397.2	663	4	44	0	44	0	multi-exon	FALSE	canonical	3	12	junction_3	6.12825877028341	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCAGCCAGCCTCAGGA	2649	False	NA	NA	False	NA	NA	NA	32538638	32548528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_32538951_32539409_32539492_32546614_32546750_32548438
ES_00009680	chr11	+	529	4	FSM	ENSMUSG00000007653.13	ENSMUST00000136050.8	658	4	0	129	0	-129	multi-exon	TRUE	canonical	1	4	junction_3	0.942809041582063	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTAATATGGGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	42312105	42378243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_42312254_42312378_42312471_42313407_42313476_42378022
ES_00009682	chr11	+	3698	3	NIC	ENSMUSG00000044950.8	novel	1814	4	NA	NA	0	924	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	21	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATTTAAGAACTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	43572884	43613242	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_43573444_43595360_43596305_43611047
ES_00009683	chr11	+	3824	4	FSM	ENSMUSG00000044950.8	ENSMUST00000094294.5	1814	4	0	-2010	0	930	multi-exon	FALSE	canonical	3	18	junction_2	38.4013888637725	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGAACTGTTTTACTGT	NA	False	NA	NA	False	AATAAA	-28	NA	43572884	43613248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_43573444_43595360_43596305_43607856_43607977_43611047
ES_00009684	chr11	+	4218	6	FSM	ENSMUSG00000019189.14	ENSMUST00000101327.3	4214	6	-4	0	-4	0	multi-exon	TRUE	canonical	1	13	junction_1	148.617091883807	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAAAGTAACTTCT	NA	False	NA	NA	False	NA	NA	NA	44410264	44445804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_44410496_44415754_44415971_44422102_44422212_44433455_44433548_44439590_44439827_44442470
ES_00009686	chr11	+	591	2	FSM	ENSMUSG00000019189.14	ENSMUST00000150257.2	674	2	83	0	83	0	multi-exon	FALSE	canonical	3	339	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTACATGATTTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	44447740	44450864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_44448266_44450798
ES_00009687	chr11	+	1076	2	NNC	ENSMUSG00000086981.4	novel	1257	4	NA	NA	7960	21376	at_least_one_novel_splicesite	TRUE	canonical	3	68	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTTAAAAAAAA	9700	False	NA	NA	False	NA	NA	NA	46447199	46469270	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_46448162_46469156
ES_00009690	chr11	+	3915	4	NNC	ENSMUSG00000046311.14	novel	366	5	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	51.0751080925598	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGTGACTTGTTTTAG	1359	False	NA	7	True	AATAAA	-16	NA	49094311	49109612	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_49094370_49103521_49103604_49104416_49104470_49105890
ES_00009691	chr11	+	2972	3	FSM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	4	0	4	0	multi-exon	FALSE	canonical	2	7	junction_1	11	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	49135076	49153854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49135167_49136019_49136445_49151397
ES_00009692	chr11	+	4381	12	NIC	ENSMUSG00000020366.19	novel	4675	12	NA	NA	0	-226	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	104.259609224774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATGTTGAAGTGTCGT	NA	False	NA	111	True	NA	NA	NA	49737597	49777012	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49760038_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ES_00009694	chr11	+	4289	21	NNC	ENSMUSG00000036644.16	novel	4407	21	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_7	33.4159767177319	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACACTGTGTGCAGTGC	NA	False	NA	5	True	AATAAA	-18	NA	50022233	50062855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042250_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
ES_00009695	chr11	+	3314	20	NIC	ENSMUSG00000036644.16	novel	4407	21	NA	NA	13	-833	combination_of_known_splicesites	FALSE	canonical	3	5	junction_15	34.6020510816653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCGCCACCTCACGGGC	NA	False	NA	NA	False	NA	NA	NA	50022241	50062024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
ES_00009696	chr11	+	4525	11	ISM	ENSMUSG00000007850.17	ENSMUST00000123371.8	4002	12	572	-607	40	0	3prime_fragment	FALSE	canonical	3	234	junction_1	87.0266625810734	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50269167	50277355	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_50269255_50270294_50270451_50270647_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ES_00009699	chr11	+	1688	3	ISM	ENSMUSG00000007850.17	ENSMUST00000156642.8	914	5	672	-207	20	0	3prime_fragment	FALSE	canonical	3	492	junction_1	4	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50274677	50277355	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_50275564_50275967_50276018_50276603
ES_00009700	chr11	+	2603	5	FSM	ENSMUSG00000020364.15	ENSMUST00000102766.10	2592	5	-11	0	-11	0	multi-exon	FALSE	canonical	2	7	junction_3	1.29903810567666	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAGTCCACCTAGTTAT	NA	False	NA	NA	False	AATAAA	-28	NA	50950072	50962189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_50950230_50950898_50950982_50951686_50951814_50952229_50952326_50960049
ES_00009701	chr11	+	4348	2	FSM	ENSMUSG00002076304.1_ENSMUSG00000020385.17	ENSMUST00000133200.2	442	2	-29	-3877	-17	-638	multi-exon	FALSE	canonical	3	128	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGTCATAAGCATATTG	NA	False	NA	NA	False	NA	NA	NA	51153959	51162208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_51154097_51157997
ES_00009702	chr11	+	1808	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153990	51172591	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ES_00009703	chr11	+	1908	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	53.6563688406117	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51154016	51172591	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ES_00009707	chr11	+	400	4	FSM	ENSMUSG00000020389.20	ENSMUST00000147874.8	513	4	0	113	0	-113	multi-exon	FALSE	canonical	1	2	junction_2	2.16024689946929	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAACACTTTATAATCTTT	1211	False	NA	NA	False	AAGAAA	-9	NA	51918123	51924438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_51918169_51920668_51920763_51923188_51923352_51924340
ES_00009711	chr11	+	9548	21	NNC	ENSMUSG00000049470.14	novel	10099	21	NA	NA	-67	-591	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_9	27.3047157099282	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGCATGCACTGTGCTC	NA	False	NA	37	True	AATAAA	-24	NA	53241592	53312066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289090_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ES_00009712	chr11	+	9706	22	NNC	ENSMUSG00000049470.14	novel	10099	21	NA	NA	-67	-591	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	37.7362850700006	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGCATGCACTGTGCTC	NA	False	NA	37	True	AATAAA	-24	NA	53241592	53312066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_53241957_53258901_53258994_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287460_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ES_00009715	chr11	+	203	1	Intergenic	novelGene_549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGTACTATTTAAGCTG	2331	False	NA	NA	False	NA	NA	NA	53269386	53269589	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53269400_53269600
ES_00009716	chr11	+	2124	10	NIC	ENSMUSG00000018398.19	novel	4436	10	NA	NA	-4	-38	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	33.2766184179422	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTAAAAAACTAAAAA	NA	False	NA	-89	True	NA	NA	NA	53410592	53432636	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_53410867_53422822_53422944_53425259_53425456_53425781_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
ES_00009722	chr11	+	2539	21	NIC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	41	-3	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	9.20584053739798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGATATATTGTACTTA	NA	False	NA	2	True	ATTAAA	-16	NA	54194664	54252358	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ES_00009723	chr11	+	5392	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108905.10	5807	21	0	415	0	-415	multi-exon	FALSE	canonical	3	10	junction_1	14.4874946074192	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGAGGACCAGTCCCTGA	NA	False	NA	NA	False	NA	NA	NA	54195027	54255163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ES_00009726	chr11	+	4826	3	FSM	ENSMUSG00000020522.14	ENSMUST00000108849.8	4827	3	0	1	0	0	multi-exon	FALSE	canonical	3	17	junction_1	35	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTGAATGATGTATATT	NA	False	NA	18	True	AATAAA	-19	NA	57409489	57424640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_57409539_57418684_57419116_57420294
ES_00009728	chr11	+	5668	1	Intergenic	novelGene_562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	396	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTAGCCTGAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	57445629	57451297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_57445600_57451300
ES_00009729	chr11	+	2321	7	FSM	ENSMUSG00000020515.14	ENSMUST00000108843.8	2099	7	22	-244	22	244	multi-exon	FALSE	canonical	2	5	junction_1	277.140558000609	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGATTTAGCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	57995076	58009664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_57995175_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ES_00009730	chr11	+	364	3	NNC	ENSMUSG00000020514.9	novel	722	7	NA	NA	-1109	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	723	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAAGACTCTTTCCATCT	372	False	NA	NA	False	NA	NA	NA	58061377	58068110	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_58061542_58066903_58067036_58068042
ES_00009731	chr11	+	525	5	FSM	ENSMUSG00000020514.9	ENSMUST00000140997.2	484	5	-41	0	-13	0	multi-exon	FALSE	canonical	3	1268	junction_2	64.754826074973	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAAGACTCTTTCCATCT	1468	False	NA	NA	False	NA	NA	NA	58062473	58068110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042
ES_00009732	chr11	+	1331	1	FSM	ENSMUSG00000082292.4	ENSMUST00000119467.2	1274	1	28	-85	28	85	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCCTGAAGCACCCTGG	NA	False	NA	NA	False	NA	NA	NA	58078592	58079923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58078600_58079900
ES_00009733	chr11	+	295	1	FSM	ENSMUSG00000056895.5	ENSMUST00000078267.5	614	1	137	182	137	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCAGAGCCACCTTCC	NA	False	NA	NA	False	NA	NA	NA	58839882	58840177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58839900_58840200
ES_00009736	chr11	+	394	2	NIC	ENSMUSG00000036860.15	novel	718	4	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093331	59096714	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_59093486_59096474
ES_00009737	chr11	+	3353	4	FSM	ENSMUSG00000000126.12	ENSMUST00000108783.4	3318	4	-38	3	-36	-3	multi-exon	FALSE	canonical	1	1	junction_3	1.69967317119759	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTCCGATGTTTTCAC	5580	False	NA	NA	False	AATAAA	-22	NA	59197717	59224375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59197894_59218389_59218647_59219327_59219591_59221718
ES_00009738	chr11	+	1412	4	FSM	ENSMUSG00000072893.13	ENSMUST00000137442.8	1414	4	0	2	0	-2	multi-exon	FALSE	canonical	2	5	junction_3	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTTTTCATTGTGCAG	NA	False	NA	NA	False	AATAAA	-16	NA	59396978	59400927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59397713_59398016_59398139_59398656_59398765_59400479
ES_00009739	chr11	+	4153	21	FSM	ENSMUSG00000005417.18	ENSMUST00000133861.8	4153	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	114.923931363315	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGTCTGCAGCATTTT	NA	False	NA	NA	False	NA	NA	NA	59618506	59667428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59618530_59622333_59622419_59626655_59626891_59627897_59628409_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
ES_00009740	chr11	+	7360	6	FSM	ENSMUSG00000062115.16	ENSMUST00000064190.13	7348	6	-12	0	-12	0	multi-exon	FALSE	canonical	2	7	junction_1	5.67097875150313	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGCGGCCTGTGGATG	NA	False	NA	NA	False	AATAAA	-20	NA	59995826	60090021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59996221_60031066_60031197_60075921_60081449_60084764_60084859_60088614_60088665_60088856
ES_00009741	chr11	+	7125	5	FSM	ENSMUSG00000062115.16	ENSMUST00000171108.8	7125	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	4.89897948556636	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGCGGCCTGTGGATG	NA	False	NA	NA	False	AATAAA	-20	NA	60030907	60090021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60031197_60075921_60081449_60084764_60084859_60088614_60088665_60088856
ES_00009742	chr11	+	8125	5	NNC	ENSMUSG00000042650.4	novel	5730	4	NA	NA	-818	0	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_4	162.47672910297	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCACCTGTTTGAGTTTTT	8772	False	NA	4	True	NA	NA	NA	60426388	60449338	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60430022_60438513_60438595_60444539_60444696_60445063_60448513_60448532
ES_00009743	chr11	+	3539	22	NNC	ENSMUSG00000020536.13	novel	4303	22	NA	NA	-47	-808	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	75.8603263613218	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCCTGTGCATTTAGAA	NA	False	NA	NA	False	NA	NA	NA	60590501	60604204	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597266_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603868_60603954
ES_00009744	chr11	+	4303	22	FSM	ENSMUSG00000020536.13	ENSMUST00000052346.10	4303	22	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_21	57.9955428735457	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590548	60605012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603868_60603954
ES_00009745	chr11	+	4263	22	NNC	ENSMUSG00000020536.13	novel	4303	22	NA	NA	16	-18	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_15	80.74533747412	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATATCTTTTAAACTACA	NA	False	NA	21	True	AATAAA	-6	NA	60590564	60604994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601118_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603868_60603954
ES_00009748	chr11	+	4854	6	NIC	ENSMUSG00000042377.9	novel	4778	5	NA	NA	-42	-10	intron_retention	FALSE	canonical	3	11	junction_1	3.9293765408777	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGAGAGCAGTGTTG	NA	False	NA	NA	False	AATAAA	-18	NA	61574874	61600767	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_61574995_61575278_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
ES_00009749	chr11	+	824	2	NNC	ENSMUSG00000042377.9	novel	4778	5	NA	NA	43	1440	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTACCTGCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	61575287	61579124	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_61575882_61578894
ES_00009750	chr11	+	1024	2	FSM	ENSMUSG00000042298.19	ENSMUST00000136477.2	1025	2	-25	26	-25	-26	multi-exon	FALSE	canonical	3	160	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAACCCTGTCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	62172273	62173388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62172520_62172610
ES_00009751	chr11	+	2202	9	FSM	ENSMUSG00000042298.19	ENSMUST00000101075.11	2193	9	-9	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	62.3493183603478	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTGTATGGATTCTAAT	NA	False	NA	16	True	AATAAA	-12	NA	62172298	62206072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62172520_62172610_62172715_62174422_62174534_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
ES_00009752	chr11	+	1787	5	NIC	ENSMUSG00000042298.19	novel	2193	9	NA	NA	1049	-164	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	85.9025610793997	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGCAGTCTGGCAAATG	NA	False	NA	NA	False	TATAAA	-28	NA	62175548	62205908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_62175886_62176649_62176712_62199867_62200020_62203841_62204005_62204835
ES_00009753	chr11	+	1366	1	FSM	ENSMUSG00000081944.2	ENSMUST00000121709.2	301	1	-345	-720	-345	720	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTCATGTAGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	62221901	62223267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62221900_62223300
ES_00009754	chr11	+	3160	8	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-21	1637	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	89.1320964201162	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGCCTGTTTGTATTT	NA	False	NA	29	True	ATTAAA	-37	NA	62349412	62406880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729_62405978_62406501
ES_00009756	chr11	+	7150	2	NIC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	49665	1637	intron_retention	FALSE	canonical	3	316	junction_1	0	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGCCTGTTTGTATTT	NA	False	NA	29	True	ATTAAA	-37	NA	62399098	62406880	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_62403098_62403729
ES_00009757	chr11	+	942	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-176	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	17708.5	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442325	62444039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62442422_62442965_62443248_62443475
ES_00009758	chr11	+	942	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-176	0	at_least_one_novel_splicesite	TRUE	canonical	3	28992	junction_2	3212.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442325	62444039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62442422_62442965_62443476_62443703
ES_00009759	chr11	+	1415	3	FSM	ENSMUSG00000048497.12	ENSMUST00000127589.2	388	3	-215	-812	-48	505	multi-exon	FALSE	canonical	2	4	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTCCTCCTGGGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	62539441	62556567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62539683_62540272_62540375_62555495
ES_00009761	chr11	+	1174	1	FSM	ENSMUSG00000098292.2	ENSMUST00000175753.3	2936	1	-45	1807	-45	-1807	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAAGGCCAGCCCCCACA	NA	False	NA	NA	False	NA	NA	NA	62640632	62641806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62640600_62641800
ES_00009764	chr11	+	495	4	FSM	ENSMUSG00000014177.11	ENSMUST00000154176.2	602	4	0	107	0	-107	multi-exon	FALSE	canonical	3	33	junction_1	221.566142620111	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCACTTGCCCTGTTAGC	9400	False	NA	NA	False	NA	NA	NA	62770439	62776065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62770543_62772762_62772846_62774452_62774598_62775901
ES_00009767	chr11	+	3494	20	ISM	ENSMUSG00000020908.15	ENSMUST00000007301.14	5992	40	13611	0	13611	0	3prime_fragment	TRUE	canonical	1	1	junction_1	7.85957080161478	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTCTTGTGCCTT	NA	False	NA	11	True	AATAAA	-22	NA	66982736	66993117	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_66982965_66983156_66983400_66983962_66984140_66984266_66984413_66984492_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ES_00009768	chr11	+	3901	24	NIC	ENSMUSG00000060180.13	novel	5817	39	NA	NA	17726	6	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	21.3434423906099	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTGCTGTGTTTGTTAT	NA	False	NA	28	True	AATAAA	-24	NA	67235654	67262418	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_67235705_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67259930_67260036_67260134_67260231_67261745_67261881_67262313
ES_00009773	chr11	+	568	5	NNC	ENSMUSG00000060938.15	novel	526	4	NA	NA	0	51129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7674.29960973638	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	68792408	68848944	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_68792451_68793106_68793269_68794004_68794146_68795190_68795383_68848913
ES_00009778	chr11	+	3326	18	ISM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	-12	3669	-12	-5	5prime_fragment	FALSE	canonical	3	10	junction_1	5.84636047433339	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCCTGTGATTCTTCC	NA	False	NA	7	True	AATAAA	-13	NA	68989761	68997117	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
ES_00009782	chr11	+	994	4	FSM	ENSMUSG00000069835.11	ENSMUST00000151255.2	1016	4	-8	30	-8	-30	multi-exon	FALSE	canonical	2	7	junction_2	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGTGTGTGCCAGCCA	NA	False	NA	NA	False	NA	NA	NA	69512869	69514254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685
ES_00009784	chr11	+	251	2	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGCCTGTTGTCTTATAG	NA	False	NA	NA	False	NA	NA	NA	69524527	69593798	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_69524572_69593591
ES_00009785	chr11	+	250	2	FSM	ENSMUSG00000018765.6	ENSMUST00000155513.2	305	2	55	0	55	0	multi-exon	FALSE	canonical	3	1137	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATACATTCTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	69531033	69532237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69531154_69532107
ES_00009787	chr11	+	5366	29	FSM	ENSMUSG00000047284.15	ENSMUST00000177476.8	4952	29	-109	-305	-109	0	multi-exon	TRUE	canonical	3	25	junction_15	17.9310968625424	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGCCTCCGCCTCTGTC	NA	False	NA	15	True	AATAAA	-15	NA	69792532	69804646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69793012_69793833_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798833_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ES_00009789	chr11	+	5247	5	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	-147	0	intron_retention	FALSE	canonical	3	80	junction_3	5.06828373317832	275	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69826474	69832421	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ES_00009790	chr11	+	2214	4	FSM	ENSMUSG00000018572.11	ENSMUST00000135814.2	2214	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_2	68.3585319392458	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCTCCTTGTCCTATT	3649	False	NA	13	True	AATAAA	-23	NA	69887934	69890832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69888455_69888571_69888665_69889126_69889959_69890063
ES_00009791	chr11	+	739	6	FSM	ENSMUSG00000020888.17	ENSMUST00000149477.2	739	6	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_3	28.1496003524029	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTTGGGACCCGTCTC	1252	False	NA	NA	False	NA	NA	NA	69896283	69898299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278
ES_00009792	chr11	+	1169	8	NNC	ENSMUSG00000040963.16	novel	672	5	NA	NA	-1599	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	18.1299166449	101	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTAGCCTGGTTGTTT	5391	False	NA	NA	False	AAAAAG	-15	NA	69986918	69997013	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_69987005_69987632_69987745_69988004_69988101_69988645_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
ES_00009793	chr11	+	732	2	FSM	ENSMUSG00000040938.17	ENSMUST00000144494.3	755	2	15	8	15	-8	multi-exon	FALSE	canonical	2	2	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTCAATGGGAGGAGTT	NA	False	NA	NA	False	NA	NA	NA	70104839	70105672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70105091_70105191
ES_00009794	chr11	+	1156	11	FSM	ENSMUSG00000060216.16	ENSMUST00000128748.8	957	11	-224	25	-177	0	multi-exon	FALSE	canonical	3	17	junction_1	76.4928754852372	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCCTTGCCTTGGATG	NA	False	NA	NA	False	NA	NA	NA	70323283	70329548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70323580_70326341_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473
ES_00009795	chr11	+	1707	14	NIC	ENSMUSG00000060216.16	novel	1848	15	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	69.6723523816336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAATGTGTATGTGTTCT	NA	False	NA	13	True	AATAAA	-13	NA	70323467	70331499	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_70323580_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ES_00009798	chr11	+	5007	33	FSM	ENSMUSG00000020827.19	ENSMUST00000072237.13	4994	33	-13	0	-13	0	multi-exon	FALSE	canonical	2	4	junction_22	26.9057781607873	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAGATCCTACTATTG	1453	False	NA	NA	False	AATAAA	-23	NA	70453693	70505308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500906_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ES_00009802	chr11	+	2241	2	FSM	ENSMUSG00000040746.16	ENSMUST00000141237.2	2250	2	0	9	0	-9	multi-exon	FALSE	canonical	3	537	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGCTTGGTTAAAAAAAAA	9846	False	NA	NA	False	GATAAA	-32	NA	70538768	70541151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70540359_70540500
ES_00009803	chr11	+	410	3	FSM	ENSMUSG00000060600.16	ENSMUST00000134087.8	427	3	17	0	17	0	multi-exon	FALSE	canonical	3	55	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTGGAGGAGCCAGCTC	7615	False	NA	NA	False	NA	NA	NA	70548529	70549273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70548785_70548990_70549087_70549214
ES_00009804	chr11	+	1461	11	FSM	ENSMUSG00000060600.16	ENSMUST00000170716.8	1461	11	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_3	10.4861813831347	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	7707	False	NA	10	True	AATAAA	-13	NA	70548621	70553336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ES_00009805	chr11	+	5046	22	FSM	ENSMUSG00000020821.18	ENSMUST00000072187.12	5046	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.83811991101131	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTTGTCTTTAACTC	NA	False	NA	10	True	AATAAA	-15	NA	70591401	70621250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70591536_70593597_70593732_70594093_70594171_70594524_70594705_70595283_70595350_70595724_70595904_70595995_70596108_70596506_70596585_70596725_70596792_70596878_70596955_70597506_70597586_70597766_70597913_70599267_70599438_70599604_70599685_70599776_70599853_70608244_70608325_70609824_70609920_70614873_70614958_70615647_70615835_70615929_70616039_70616713_70617329_70619027
ES_00009807	chr11	+	220	2	Antisense	novelGene_ENSMUSG00000084139.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	618	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGCGCTATCTGACAT	NA	False	NA	NA	False	NA	NA	NA	70793072	70801875	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_70793124_70801706
ES_00009808	chr11	+	756	3	FSM	ENSMUSG00000018449.13	ENSMUST00000129531.8	745	3	-11	0	0	0	multi-exon	FALSE	canonical	3	311	junction_2	32	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTTTTTGTTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	70861305	70864317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70861414_70862589_70862761_70863840
ES_00009811	chr11	+	480	5	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	17	-2	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	157.733953225043	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTCTTGGTGTTCTGA	NA	False	NA	11	True	ATTAAA	-12	NA	70861371	70868625	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70868483
ES_00009813	chr11	+	681	2	FSM	ENSMUSG00000020808.4	ENSMUST00000127369.2	681	2	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATCACTCAGGAAAGGG	NA	False	NA	NA	False	GATAAA	-26	NA	71933327	71934490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_71933361_71933842
ES_00009814	chr11	+	1346	2	FSM	ENSMUSG00000053574.6	ENSMUST00000124762.2	1427	2	42	39	42	-39	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTTTAAAAAAAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	72106039	72109231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72106828_72108673
ES_00009815	chr11	+	721	1	FSM	ENSMUSG00000053574.6	ENSMUST00000066087.5	2606	1	878	1007	844	-1007	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGGAGGAAGATGCCAC	NA	False	NA	NA	False	AAGAAA	-3	NA	72106841	72107562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72106800_72107600
ES_00009816	chr11	+	1359	2	FSM	ENSMUSG00000086951.2	ENSMUST00000154739.2	1359	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAAATGCCTGAATCCAT	NA	False	NA	NA	False	TATAAA	-12	NA	72157669	72159383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72158352_72158706
ES_00009822	chr11	+	247	2	FSM	ENSMUSG00000040158.13	ENSMUST00000133922.8	389	2	0	142	0	-142	multi-exon	FALSE	canonical	3	98	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAGCTGATCCTAGAC	4376	False	NA	NA	False	GATAAA	-45	NA	73068076	73071369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_73068169_73071214
ES_00009823	chr11	+	1256	9	FSM	ENSMUSG00000112920.2	ENSMUST00000092926.11	1274	9	18	0	18	0	multi-exon	FALSE	canonical	2	4	junction_2	2.3418742493994	578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTATAAAAGTAAAACT	7189	False	NA	NA	False	NA	NA	NA	73220584	73236870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_73220602_73221913_73222021_73224123_73224253_73226835_73226897_73227020_73227117_73231076_73231411_73234562_73234687_73235471_73235570_73236580
ES_00009825	chr11	+	5583	26	NNC	ENSMUSG00000020741.18	novel	5379	26	NA	NA	-183	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_12	82.3110587952797	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74540137	74561673	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554612_74554719_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ES_00009827	chr11	+	6098	24	FSM	ENSMUSG00000020741.18	ENSMUST00000155558.8	6098	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	91.4167010590197	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74540365	74561673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74555753_74555832_74556253_74556518_74556604_74556748_74556893_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ES_00009828	chr11	+	3185	12	ISM	ENSMUSG00000020741.18	ENSMUST00000117818.2	4284	25	15059	-942	92	0	3prime_fragment	FALSE	canonical	3	235	junction_1	37.3849751054667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74555399	74561673	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ES_00009829	chr11	+	2731	11	NIC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	0	798	combination_of_known_junctions	FALSE	canonical	3	58	junction_5	139.204202522769	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGATCCTGTTTGAATCC	8580	False	NA	102	True	AATATA	-20	NA	74661741	74709518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ES_00009831	chr11	+	3342	10	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	17	-13	intron_retention	TRUE	canonical	1	2	junction_2	24.9701055832671	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGGGATGGCAACTCTG	NA	False	NA	22	True	AATAAA	-24	NA	75239275	75296518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_75239578_75240494_75240641_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ES_00009833	chr11	+	449	2	FSM	ENSMUSG00000085148.2	ENSMUST00000134345.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGGCAGTGGGAAG	3943	False	NA	NA	False	TATAAA	-41	NA	75352469	75354855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75352582_75354518
ES_00009834	chr11	+	564	5	FSM	ENSMUSG00000038217.14	ENSMUST00000124718.8	564	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.2249721603218	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTCTGGGATGGATGAG	4014	False	NA	NA	False	NA	NA	NA	75352540	75360489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75352582_75354518_75354684_75359382_75359466_75359667_75359751_75360297
ES_00009838	chr11	+	3381	11	FSM	ENSMUSG00000006127.10	ENSMUST00000136605.8	3381	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0786284518105	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTCTCGTGTGACTCCT	5480	False	NA	19	True	TATAAA	-10	NA	75521854	75539689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528043_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
ES_00009839	chr11	+	965	3	FSM	ENSMUSG00000017776.16	ENSMUST00000093115.4	965	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	223.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATTTAAAAAAA	2150	False	NA	NA	False	NA	NA	NA	75570136	75591615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75570491_75583022_75583389_75591370
ES_00009840	chr11	+	480	4	FSM	ENSMUSG00000020849.14	ENSMUST00000131398.2	461	4	-19	0	-19	0	multi-exon	FALSE	canonical	2	15	junction_1	5045.49603331746	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAGCAGAGAACAGCCTC	3251	False	NA	NA	False	NA	NA	NA	75623954	75647698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75624072_75642706_75642907_75646399_75646507_75647642
ES_00009841	chr11	+	898	2	FSM	ENSMUSG00000053783.6	ENSMUST00000066408.6	921	2	22	1	22	-1	multi-exon	FALSE	canonical	2	5	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAAGGAAGCCGATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	75890759	75894394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75891093_75893829
ES_00009842	chr11	+	1832	4	NNC	ENSMUSG00000038046.5	novel	1510	4	NA	NA	3	349	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	62.7818091134331	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTTTTCGGATTTCTC	574	False	NA	NA	False	NA	NA	NA	76134564	76141794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_76134913_76135107_76135350_76138172_76138341_76140720
ES_00009843	chr11	+	212	1	Intergenic	novelGene_621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCCTCCCAGGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	76172692	76172904	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_76172700_76172900
ES_00009847	chr11	+	340	1	Intergenic	novelGene_624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCACCAGCCCAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	77136659	77136999	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_77136700_77137000
ES_00009848	chr11	+	1411	9	FSM	ENSMUSG00000020836.16	ENSMUST00000052515.12	1476	9	65	0	-10	0	multi-exon	FALSE	canonical	1	1	junction_7	2.8613807855649	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGGGGTTGGAATCAGG	5453	False	NA	NA	False	NA	NA	NA	77354726	77360427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77354937_77356491_77356615_77357020_77357151_77357243_77357426_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360201
ES_00009850	chr11	+	201	2	Antisense	novelGene_ENSMUSG00000017291.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	47	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTAGGAGAAAGCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	77485000	77490351	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_77485052_77490201
ES_00009851	chr11	+	10360	5	NNC	ENSMUSG00000037857.17	novel	5158	4	NA	NA	0	5226	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	84.6119820120058	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGGTGTTTGTGGGTTTT	NA	False	NA	13	True	AATAAA	-16	NA	77576980	77608793	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508_77601907_77601930
ES_00009852	chr11	+	766	3	FSM	ENSMUSG00000037857.17	ENSMUST00000126942.2	777	3	11	0	11	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACTCCTAAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	77578295	77582746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77578638_77579112_77579158_77582367
ES_00009853	chr11	+	3217	11	ISM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	-187	4347	-139	0	5prime_fragment	FALSE	canonical	3	95	junction_1	13.3356664625357	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATAAACAACTTTTTGG	NA	False	NA	NA	False	AATAAA	-33	NA	77873440	77917018	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710
ES_00009854	chr11	+	4006	3	FSM	ENSMUSG00000037750.17	ENSMUST00000155571.2	3358	3	-9	-639	-9	639	multi-exon	FALSE	canonical	3	8	junction_1	36	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATCTTTTTTTTTTTTT	NA	False	NA	NA	False	AGTAAA	-10	NA	78006422	78048165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78006664_78033918_78034041_78044522
ES_00009862	chr11	+	203	2	Intergenic	novelGene_638	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAATCTTGAGTAG	NA	False	NA	NA	False	NA	NA	NA	78607648	78635848	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_78607678_78635674
ES_00009865	chr11	+	6529	22	NNC	ENSMUSG00000020716.17	novel	4133	18	NA	NA	-400	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	4.61782016091454	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAGGAGTTATTTATCA	NA	False	NA	NA	False	AGTAAA	-24	NA	79427333	79472438	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_79427392_79427618_79427960_79431155_79431359_79436179_79436374_79437097_79437239_79437796_79438077_79438493_79438709_79439299_79439362_79439499_79439615_79440233_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456243_79456378_79456745_79456847_79459475_79459619_79459949_79459997_79461056_79461274_79469079
ES_00009867	chr11	+	7042	14	NNC	ENSMUSG00000017639.14	novel	677	3	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	65	junction_13	22.8990581445029	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79551365	79588849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548_79587486_79587516
ES_00009869	chr11	+	3145	16	NNC	ENSMUSG00000017548.16	novel	4373	16	NA	NA	-138	752	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_12	484.808800800206	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCAGTGTGACTGCCTTC	NA	False	NA	NA	False	AAAACA	-22	NA	79883793	79923579	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916142_79916622_79916781_79919973_79920173_79920832_79920913_79922670
ES_00009870	chr11	+	550	3	FSM	ENSMUSG00000017550.15	ENSMUST00000154168.2	550	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	1	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTTGTCCTCTGTTAAC	616	False	NA	NA	False	NA	NA	NA	79993828	79999334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_79994168_79997079_79997265_79999308
ES_00009871	chr11	+	1256	10	ISM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-31	1681	-31	-1681	5prime_fragment	FALSE	canonical	3	12	junction_2	3.01027048536535	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTGGGGGATGGGTGGG	NA	False	NA	NA	False	NA	NA	NA	80044899	80068103	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871
ES_00009872	chr11	+	2989	1	Genic_Genomic	ENSMUSG00000020709.16	novel	NA	NA	NA	NA	23518	1664	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGGCTTCACTCTTCAA	NA	False	NA	NA	False	ATTAAA	-14	NA	80068459	80071448	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_80068500_80071400
ES_00009873	chr11	+	1822	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	12	-6	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAACTGTGTTGAGTTCA	NA	False	NA	28	True	NA	NA	NA	80074688	80090577	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
ES_00009876	chr11	+	209	1	Intergenic	novelGene_656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGAAGGGATTATGGAAG	NA	False	NA	NA	False	AAGAAA	-5	NA	80269447	80269656	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80269400_80269700
ES_00009877	chr11	+	2308	11	FSM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	3	0	3	0	multi-exon	FALSE	canonical	3	18	junction_5	381.677992553933	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	False	NA	127	True	AATAAA	-15	NA	80274107	80287071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ES_00009878	chr11	+	2895	17	FSM	ENSMUSG00000017421.19	ENSMUST00000178665.8	2898	17	3	0	3	0	multi-exon	FALSE	canonical	1	1	junction_16	451.912909025345	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGTTATAAATGTCG	NA	False	NA	NA	False	AATAAA	-37	NA	80274107	80296559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471_80293538_80294190_80294235_80294426_80294489_80295566
ES_00009879	chr11	+	2295	12	NNC	ENSMUSG00000017421.19	novel	1562	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	172	junction_7	342.859752548116	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	False	NA	127	True	AATAAA	-15	NA	80274156	80287071	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282216_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ES_00009881	chr11	+	3247	1	FSM	ENSMUSG00000048895.14	ENSMUST00000053413.12	4162	1	900	15	867	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACCATCCGTCACATCC	NA	False	NA	12	True	AATAAA	-5	NA	80368748	80371995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80368700_80372000
ES_00009882	chr11	+	2498	13	FSM	ENSMUSG00000020697.17	ENSMUST00000172609.2	2901	13	13	390	13	-390	multi-exon	FALSE	canonical	3	52	junction_3	38.9539436029553	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGGTTTGGTCCCTGT	NA	False	NA	NA	False	NA	NA	NA	82671980	82686977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686613_82686853
ES_00009889	chr11	+	1066	1	FSM	ENSMUSG00000087107.9	ENSMUST00000216842.2	2577	1	1958	-447	1385	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGACATGTATGTATGT	NA	False	NA	NA	False	NA	NA	NA	83116359	83117425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83116400_83117400
ES_00009890	chr11	+	1203	3	FSM	ENSMUSG00000083161.3	ENSMUST00000215482.2	1203	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTAATTCTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	83145970	83151786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83146143_83149950_83150065_83150869
ES_00009891	chr11	+	392	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177150.2	383	3	-9	0	-9	0	multi-exon	FALSE	non_canonical	0	0	junction_1	190.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTATTTGTTTGGGTAAG	5839	False	NA	9	True	ATTAAA	-18	NA	83182515	83185457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83182660_83182792_83182924_83185340
ES_00009893	chr11	+	5316	21	NIC	ENSMUSG00000035152.15	novel	2742	21	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	52.853665908809	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTTTGTGGTATGGACT	4398	False	NA	NA	False	AATAAA	-16	NA	83189791	83295861	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_83189880_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
ES_00009894	chr11	+	3990	23	FSM	ENSMUSG00000034940.16	ENSMUST00000183456.8	3990	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_22	27.7269746630775	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGCTCAATGAAGCTG	1480	False	NA	NA	False	NA	NA	NA	83855301	83931754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83855373_83862377_83862419_83867908_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83930481_83930518_83931622
ES_00009896	chr11	+	9026	54	FSM	ENSMUSG00000020532.19	ENSMUST00000020843.13	9026	54	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_49	40.9586007765413	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84086263	84292471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84181113_84181138_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ES_00009898	chr11	+	214	1	Intergenic	novelGene_665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATGCATGGGCTTCTTC	6997	False	NA	NA	False	AATAAA	-6	NA	84202600	84202814	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_84202600_84202800
ES_00009899	chr11	+	3644	23	FSM	ENSMUSG00000020527.15	ENSMUST00000124152.8	3644	23	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	38.7069942640691	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTGTTTTAAGTA	NA	False	NA	25	True	AATAAA	-33	NA	84771178	84801957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ES_00009900	chr11	+	4241	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_2	32.2787856029312	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84771183	84801948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_84771338_84771615_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ES_00009901	chr11	+	210	2	Intergenic	novelGene_668	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCACTTTTTCAACTAC	NA	False	NA	NA	False	NA	NA	NA	84992203	85074846	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_84992238_85074670
ES_00009902	chr11	+	236	1	Intergenic	novelGene_671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCCCTCTCTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	85219064	85219300	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_85219100_85219300
ES_00009904	chr11	+	3975	27	NNC	ENSMUSG00000059439.16	novel	3810	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_25	38.4137587838697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGTTGCTGGGGTCA	3496	False	NA	14	True	AATAAA	-22	NA	85244010	85716884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_85244060_85245419_85245488_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474821_85692610_85692779_85704825_85704892_85712601_85712939_85716027
ES_00009905	chr11	+	2096	11	FSM	ENSMUSG00000059439.16	ENSMUST00000092822.5	2085	11	-11	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	40.3112887414927	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGTTGCTGGGGTCA	NA	False	NA	14	True	AATAAA	-22	NA	85400452	85716884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474821_85692610_85692779_85704825_85704892_85716027
ES_00009909	chr11	+	2219	10	NNC	ENSMUSG00000020521.8	novel	4452	9	NA	NA	0	5173	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	96.6717750885202	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATACACATGAACACGCA	NA	False	NA	NA	False	NA	NA	NA	86375510	86395024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646_86387372_86394749
ES_00009910	chr11	+	5979	3	FSM	ENSMUSG00000020492.12	ENSMUST00000131202.2	673	3	-2778	-2528	-2778	0	multi-exon	FALSE	canonical	3	196	junction_2	4	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	13	True	AATAAA	-21	NA	87003916	87015461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87007017_87008493_87008671_87012759
ES_00009911	chr11	+	219	2	Antisense	novelGene_ENSMUSG00000046442.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGCACACACTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	87247193	87260224	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_87247223_87260034
ES_00009915	chr11	+	216	1	FSM	ENSMUSG00002074955.1	ENSMUST00020183227.1	216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTTATTTTACATGTT	NA	False	NA	NA	False	NA	NA	NA	87353111	87353327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87353100_87353300
ES_00009916	chr11	+	208	2	Intergenic	novelGene_682	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	77	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGCATAGTACAGCCCA	NA	False	NA	NA	False	NA	NA	NA	87355112	87360277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87355167_87360123
ES_00009917	chr11	+	3597	16	ISM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	112944	0	-18715	0	3prime_fragment	FALSE	canonical	3	84	junction_9	14.1131931972259	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGCCAGTTGTGATT	3753	False	NA	14	True	AATAAA	-20	NA	87408834	87446649	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
ES_00009919	chr11	+	4730	20	NIC	ENSMUSG00000018401.18	novel	4664	19	NA	NA	65	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	39.6966335434309	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCACTTCCCCCATGT	NA	False	NA	3	True	AATAAA	-16	NA	87483354	87505998	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_87483422_87483723_87483853_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ES_00009921	chr11	+	2438	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5042	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_5	42.6521295159941	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1414	False	NA	18	True	TATAAA	-20	NA	87738998	87754629	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87739055_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747485_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ES_00009923	chr11	+	6805	2	FSM	ENSMUSG00000018379.18	ENSMUST00000171976.2	645	2	-1231	-4929	-879	0	multi-exon	FALSE	canonical	3	1310	junction_1	0	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGATTTAAGTTCTCC	5371	False	NA	20	True	AATAAA	-22	NA	87937319	87944581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87938859_87939315
ES_00009926	chr11	+	556	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-2714	-17952	at_least_one_novel_splicesite	FALSE	canonical	3	959	junction_1	407.5	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGAGGGCCCCACAGCC	6717	False	NA	NA	False	NA	NA	NA	88858363	88863828	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_88858476_88861243_88861306_88863446
ES_00009927	chr11	+	4191	10	Fusion	ENSMUSG00000081766.4_ENSMUSG00000033983.15	novel	2607	7	NA	NA	-2714	0	intron_retention	FALSE	canonical	3	287	junction_3	275.601609054774	201	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	6717	False	NA	15	True	AATAAA	-17	NA	88858363	88882439	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_+_88858476_88861243_88861306_88861723_88861820_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ES_00009929	chr11	+	4186	8	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-37	0	intron_retention	FALSE	canonical	3	336	junction_3	495.280419436859	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9394	False	NA	15	True	AATAAA	-17	NA	88861040	88882439	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_88861306_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ES_00009931	chr11	+	5250	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107853.8	5245	16	0	-5	0	5	multi-exon	FALSE	canonical	3	14	junction_1	36.201657420621	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTTTTCAACATTGATT	NA	False	NA	24	True	AATAAA	-25	NA	93776677	93837816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00009932	chr11	+	5364	17	NIC	ENSMUSG00000059474.14	novel	5232	16	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	44.0468500576375	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776962	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_93777243_93782164_93782215_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00009934	chr11	+	5356	17	NNC	ENSMUSG00000059474.14	novel	5232	16	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	39.4792271327593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776978	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799770_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00009938	chr11	+	2976	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	-17	-2304	-8	2133	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCCGATGCAGTCTATC	NA	False	NA	NA	False	NA	NA	NA	94544584	94553048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
ES_00009939	chr11	+	2453	5	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	13797	18	4653	-18	3prime_fragment	FALSE	canonical	2	4	junction_1	14.6180539060437	377	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTGGAAATGACCCAATG	NA	False	NA	NA	False	AATAAA	-2	NA	94840846	94843850	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_94841031_94841116_94841400_94841534_94841726_94841926_94842170_94842298
ES_00009940	chr11	+	734	2	FSM	ENSMUSG00000020873.16	ENSMUST00000141284.2	719	2	-15	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGATGAATAATTTTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	95275716	95277137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95275940_95276626
ES_00009941	chr11	+	1357	10	NNC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	0	10897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	88.64508230739	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAGCTCTGACTCAAAG	NA	False	NA	NA	False	NA	NA	NA	95275716	95293499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313_95282601_95293464
ES_00009944	chr11	+	597	2	FSM	ENSMUSG00000038845.12	ENSMUST00000127031.2	610	2	-52	65	1	-65	multi-exon	FALSE	canonical	3	4618	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAGTTTCTCACTATTG	NA	False	NA	NA	False	NA	NA	NA	95557783	95559374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95557869_95558862
ES_00009946	chr11	+	216	1	Intergenic	novelGene_698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	619	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAAGAAATTCGTCAGGA	4679	False	NA	NA	False	NA	NA	NA	95671676	95671892	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95671700_95671900
ES_00009947	chr11	+	626	3	FSM	ENSMUSG00000038811.14	ENSMUST00000036088.11	1587	3	961	0	22	0	multi-exon	FALSE	canonical	2	4	junction_1	7	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95734456	95736560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95734722_95735857_95735967_95736308
ES_00009948	chr11	+	247	2	Intergenic	novelGene_701	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	608	junction_1	0	538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTGTAACCAATTGAAT	NA	False	NA	NA	False	TATAAA	-3	NA	95904299	95905091	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95904352_95904896
ES_00009949	chr11	+	858	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	-9	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3268	False	NA	21	True	AATAAA	-43	NA	95925781	95938256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
ES_00009950	chr11	+	215	1	Intergenic	novelGene_703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTCTCTGCTGGTAAAA	5877	False	NA	NA	False	NA	NA	NA	96013209	96013424	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96013200_96013400
ES_00009951	chr11	+	2157	2	FSM	ENSMUSG00000038692.9	ENSMUST00000049241.9	2566	2	401	8	401	-8	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCATCACATCGTGGTTTT	6044	False	NA	NA	False	AATAAA	-16	NA	96209493	96212456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96210050_96210855
ES_00009952	chr11	+	417	5	FSM	ENSMUSG00000018672.16	ENSMUST00000145633.2	407	5	-14	4	-3	-4	multi-exon	FALSE	canonical	0	0	junction_3	113.018803745218	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATTTCAGAGATTGGGT	766	False	NA	NA	False	NA	NA	NA	96740692	96744975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96740823_96741498_96741568_96742936_96742981_96744260_96744343_96744883
ES_00009953	chr11	+	514	4	FSM	ENSMUSG00000018672.16	ENSMUST00000154191.2	653	4	39	100	39	-100	multi-exon	FALSE	canonical	3	217	junction_3	13.9124245031395	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACGTCTAAGAGGAAAGCT	1807	False	NA	NA	False	NA	NA	NA	96744764	96747666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96744976_96745409_96745466_96746081_96746160_96747497
ES_00009954	chr11	+	1364	2	FSM	ENSMUSG00000047040.10	ENSMUST00000054311.6	1342	2	-27	5	-27	0	multi-exon	FALSE	canonical	3	6	junction_1	0	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACGGTCTTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	96820100	96826469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96820336_96825340
ES_00009955	chr11	+	1552	7	FSM	ENSMUSG00000020877.12	ENSMUST00000126874.2	1552	7	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	9.66810334151545	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGAACTGGATCTCA	NA	False	NA	9	True	AATAAA	-15	NA	96920826	96924776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96924056_96924144_96924326_96924491
ES_00009956	chr11	+	586	1	FSM	ENSMUSG00000081860.2	ENSMUST00000120287.2	477	1	2	-111	2	111	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATCAGAGAGGAGAGAGA	1650	False	NA	NA	False	AGTAAA	-8	NA	96927834	96928420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96927800_96928400
ES_00009957	chr11	+	2946	2	Intergenic	novelGene_710	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAGCCATCTTTCTGAC	9296	False	NA	NA	False	NA	NA	NA	96976322	96981326	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96977725_96979782
ES_00009958	chr11	+	1621	9	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	34	27870	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	960.640012895049	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCCATGGCTGACACA	NA	False	NA	NA	False	NA	NA	NA	97206575	97248616	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307_97219933_97248578
ES_00009959	chr11	+	1131	3	ISM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	1	3587	1	275	5prime_fragment	FALSE	canonical	3	106	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAATGGGTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	97489337	97510132	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_97489494_97505749_97505855_97509262
ES_00009961	chr11	+	487	5	FSM	ENSMUSG00000038366.16	ENSMUST00000129558.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	268.328506685369	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGCGCCGAGAAGCCC	4729	False	NA	NA	False	NA	NA	NA	97690663	97724433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97690801_97697650_97697746_97706523_97706609_97715667_97715776_97724371
ES_00009962	chr11	+	742	1	FSM	ENSMUSG00000085897.3	ENSMUST00000121487.2	742	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	8600	False	NA	NA	False	NA	NA	NA	98076191	98076933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98076200_98076900
ES_00009963	chr11	+	8167	14	NNC	ENSMUSG00000003119.15	novel	5912	14	NA	NA	-281	1977	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	25.4502647595533	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCTGCATTGCATTTA	NA	False	NA	NA	False	ATTAAA	-21	NA	98093603	98144367	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_98095237_98101189_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
ES_00009964	chr11	+	6213	18	NIC	ENSMUSG00000003119.15	novel	5912	14	NA	NA	-275	34	combination_of_known_junctions	FALSE	canonical	3	9	junction_14	36.4238790072902	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGACAAGGTTTCT	NA	False	NA	NA	False	AAAAAG	-21	NA	98093609	98169364	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535_98140927_98154295_98154397_98155019_98155134_98158577_98158685_98168196
ES_00009965	chr11	+	213	1	Intergenic	novelGene_729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTCTTTATAGGCCTT	NA	False	NA	NA	False	NA	NA	NA	98159971	98160184	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_98160000_98160200
ES_00009969	chr11	+	2091	3	FSM	ENSMUSG00000052915.15	ENSMUST00000107485.8	2091	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGACTATCTTGGGATAT	605	False	NA	NA	False	AATAAA	-28	NA	98686616	98691878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_98687431_98689965_98690190_98690825
ES_00009972	chr11	+	2523	12	NIC	ENSMUSG00000017499.16	novel	4802	13	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	67	junction_4	177.064586432734	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGTCTGGGCTGCATTT	12	False	NA	7	True	AATATA	-16	NA	98798670	98812718	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802216_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ES_00009975	chr11	+	924	2	FSM	ENSMUSG00000035530.14	ENSMUST00000152521.2	924	2	0	0	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTATGTCACTAGAGGGA	4780	False	NA	NA	False	NA	NA	NA	100211533	100212575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100211656_100211773
ES_00009976	chr11	+	2186	11	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	3944	4	4	-4	3prime_fragment	FALSE	canonical	3	16	junction_2	6.19354502688081	1570	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATCTTGAGTGACACT	NA	False	NA	NA	False	ATTAAA	-18	NA	100440376	100462785	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ES_00009977	chr11	+	201	1	Intergenic	novelGene_735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAAACAGCTTAATG	NA	False	NA	NA	False	NA	NA	NA	100704048	100704249	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_100704000_100704200
ES_00009979	chr11	+	736	5	FSM	ENSMUSG00000019302.17	ENSMUST00000151554.2	828	5	-24	116	-24	-116	multi-exon	FALSE	canonical	3	190	junction_3	14.517231140958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCCTGTTTTAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	100900253	100912120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879
ES_00009980	chr11	+	853	7	ISM	ENSMUSG00000019302.17	ENSMUST00000154896.8	4162	16	40	17347	5	-24	5prime_fragment	FALSE	canonical	3	165	junction_5	19.5256241897666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGAGACCTTACTTGA	NA	False	NA	NA	False	NA	NA	NA	100900317	100918302	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092
ES_00009982	chr11	+	1813	6	ISM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	-44	999	16	0	5prime_fragment	FALSE	canonical	3	125	junction_1	19.6977156035922	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGGAGGGATGACGG	3527	False	NA	NA	False	NA	NA	NA	100973406	100976446	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361
ES_00009983	chr11	+	436	3	Fusion	ENSMUSG00000035198.10_ENSMUSG00000045007.10	novel	1802	11	NA	NA	150	-4867	multi-exon	FALSE	canonical	3	134	junction_2	306	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCACTCCTAGAGTTCCT	1380	False	NA	NA	False	NA	NA	NA	101010913	101047746	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_+_101011069_101011372_101011486_101047578
ES_00009985	chr11	+	4368	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107208.8	4344	23	-24	0	-24	0	multi-exon	FALSE	canonical	3	41	junction_22	52.5711049377904	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	954	False	NA	21	True	AATAAA	-24	NA	101443659	101472777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
ES_00009987	chr11	+	672	6	FSM	ENSMUSG00000034947.14	ENSMUST00000107194.8	664	6	-8	0	5	0	multi-exon	FALSE	canonical	2	2	junction_1	8.42377587546108	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGTCACCAGCAGCCTC	3695	False	NA	NA	False	NA	NA	NA	101473074	101479766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101473152_101473468_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678
ES_00009988	chr11	+	331	2	Intergenic	novelGene_743	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	47	junction_1	0	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACACACACACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101511886	101512368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101511938_101512088
ES_00009989	chr11	+	795	4	FSM	ENSMUSG00000010362.10	ENSMUST00000139037.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_1	159.858965619351	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCAGAAGCTTGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	101518797	101524658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101519279_101521063_101521187_101521645_101521806_101524627
ES_00009990	chr11	+	242	2	Antisense	novelGene_ENSMUSG00000119892.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAAAATTATTG	NA	False	NA	NA	False	ATTAAA	-2	NA	101527612	101538383	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_101527702_101538230
ES_00009991	chr11	+	437	3	FSM	ENSMUSG00000034931.16	ENSMUST00000125409.2	675	3	-8	246	-8	-246	multi-exon	FALSE	canonical	3	198	junction_1	2	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGAGGGCTCCAGCTGA	NA	False	NA	NA	False	AGTAAA	-2	NA	101623736	101626276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101624015_101624981_101625068_101626203
ES_00009992	chr11	+	1449	5	FSM	ENSMUSG00000034793.16	ENSMUST00000124594.8	895	5	-125	-429	-125	0	multi-exon	FALSE	canonical	3	149	junction_3	4.76313972081441	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102082509	102084907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
ES_00009994	chr11	+	2746	2	ISM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	-293	0	-28	0	intron_retention	FALSE	canonical	3	94	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175728	102180063	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_102176545_102178133
ES_00009995	chr11	+	1863	11	NNC	ENSMUSG00000006575.15	novel	2046	11	NA	NA	171	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	60.3033166583729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	7580	False	NA	14	True	AATAAA	-16	NA	102284399	102293381	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_102284609_102288396_102288513_102288922_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
ES_00009996	chr11	+	1691	8	FSM	ENSMUSG00000006575.15	ENSMUST00000146330.8	1878	8	187	0	-68	0	multi-exon	FALSE	canonical	3	187	junction_3	28.1294384252948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	3670	False	NA	14	True	AATAAA	-16	NA	102288876	102293381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290872_102291486_102291625_102291719_102291827_102292806
ES_00009997	chr11	+	834	7	FSM	ENSMUSG00000034708.13	ENSMUST00000129997.2	834	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	226.382971974484	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGATGATTCTACCTGCTG	4334	False	NA	NA	False	NA	NA	NA	102321343	102325272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102321529_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225
ES_00009999	chr11	+	5284	26	NNC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	-8	0	intron_retention	TRUE	canonical	0	0	junction_8	7.02566722810012	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTCTCTCCTCTCTCT	NA	False	NA	32	True	ATTAAA	-43	NA	102652256	102671088	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662562_102662808_102662870_102662935_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ES_00010001	chr11	+	1943	9	FSM	ENSMUSG00000056938.17	ENSMUST00000107040.10	1959	9	16	0	10	0	multi-exon	FALSE	canonical	3	12	junction_3	46.5879544517679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992523	103003023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ES_00010002	chr11	+	2145	11	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	29	0	intron_retention	FALSE	canonical	3	19	junction_2	40.6811995889993	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992580	103003026	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_102992615_102993507_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ES_00010004	chr11	+	1503	8	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	7	0	intron_retention	FALSE	canonical	3	12	junction_2	49.0289377275694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102993908	103003026	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_102993972_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ES_00010005	chr11	+	1582	9	NIC	ENSMUSG00000056938.17	novel	807	7	NA	NA	10	-4	intron_retention	FALSE	canonical	3	44	junction_1	32.3138902022025	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCAGTCTGCTGTCTGG	NA	False	NA	-1	True	ATTAAA	-9	NA	102993943	103003019	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ES_00010007	chr11	+	2134	1	FSM	ENSMUSG00000048878.7	ENSMUST00000053063.7	3495	1	13	1348	13	-1348	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCAGTGTGATTTCTA	NA	False	NA	10	True	AATAAA	-21	NA	103007069	103009203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_103007100_103009200
ES_00010008	chr11	+	1432	9	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	-125	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	204.655045136933	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATGGAGAGAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	104122090	104219036	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_104122434_104173193_104173307_104193186_104193237_104197451_104197585_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
ES_00010009	chr11	+	605	6	FSM	ENSMUSG00000018411.18	ENSMUST00000145227.8	600	6	-5	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	19.7281524730523	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCCGGCCCAGAAGGGC	NA	False	NA	NA	False	NA	NA	NA	104122304	104197500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104196037_104196236_104197451
ES_00010010	chr11	+	1125	8	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	225.97661067338	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATGGAGAGAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	104122304	104219036	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_104122434_104173193_104173307_104193186_104193237_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00010011	chr11	+	464	6	FSM	ENSMUSG00000018411.18	ENSMUST00000146353.2	464	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.5357651887508	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGACTCCTCCAGGG	NA	False	NA	NA	False	NA	NA	NA	104122404	104197560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104196138_104196236_104197451
ES_00010012	chr11	+	5239	8	NIC	ENSMUSG00000018411.18	novel	1362	12	NA	NA	7204	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	222.022337541399	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	NA	False	NA	NA	False	AATAAA	-19	NA	104180410	104222916	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_104180821_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00010013	chr11	+	230	2	Antisense	novelGene_ENSMUSG00000018412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTCAGTATTTTAAAACA	747	False	NA	NA	False	NA	NA	NA	104187098	104227914	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_104187125_104227710
ES_00010014	chr11	+	4424	6	ISM	ENSMUSG00000020689.5	ENSMUST00000127140.3	4375	11	6201	-663	6201	0	3prime_fragment	FALSE	canonical	2	8	junction_5	2.99332590941915	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCCTGAGACTACCCCAT	7338	False	NA	NA	False	ATTAAA	-18	NA	104534415	104561302	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_104534832_104549548_104549772_104550861_104550963_104553154_104553275_104556291_104556459_104557905
ES_00010017	chr11	+	2776	18	FSM	ENSMUSG00000020694.18	ENSMUST00000145048.8	2776	18	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	102.056433265788	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTGGCAAAGATTTATTA	NA	False	NA	NA	False	NA	NA	NA	105072807	105167699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105112011_105112180_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662
ES_00010019	chr11	+	2316	3	FSM	ENSMUSG00000053580.17	ENSMUST00000124367.2	2331	3	0	15	0	-15	multi-exon	FALSE	canonical	3	16	junction_1	2	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATGTCCTATGCAAAAG	NA	False	NA	NA	False	GATAAA	-38	NA	105515863	105606364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105515951_105564245_105564318_105604207
ES_00010021	chr11	+	661	5	FSM	ENSMUSG00000053580.17	ENSMUST00000147975.2	3287	5	77	2549	77	-2549	multi-exon	FALSE	canonical	2	6	junction_3	2.17944947177034	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGAGAAAGAGAGATGAT	8067	False	NA	NA	False	AAAAAG	-13	NA	105792885	105804315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105792980_105799820_105799955_105801028_105801153_105803737_105803914_105804182
ES_00010022	chr11	+	3684	18	NNC	ENSMUSG00000020705.7	novel	445	2	NA	NA	-474	-197	at_least_one_novel_splicesite	FALSE	canonical	2	54	junction_1	112.518818110864	63	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTTGTGAAGGTTTCT	NA	False	NA	20	True	TATAAA	-28	NA	106107277	106139768	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_106107379_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ES_00010024	chr11	+	760	1	FSM	ENSMUSG00000080540.4	ENSMUST00000116890.4	133	1	31	-658	31	658	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTACAGTGCTGGAGGC	4872	False	NA	NA	False	NA	NA	NA	106392101	106392861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_106392100_106392900
ES_00010025	chr11	+	248	1	Intergenic	novelGene_761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGCAAACCAAACCCAAG	NA	False	NA	NA	False	NA	NA	NA	106640619	106640867	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106640600_106640900
ES_00010027	chr11	+	203	1	Intergenic	novelGene_766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGTCTTAATGAGACA	NA	False	NA	NA	False	NA	NA	NA	106906608	106906811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106906600_106906800
ES_00010028	chr11	+	1646	3	FSM	ENSMUSG00000078607.7	ENSMUST00000106767.3	1100	3	-572	26	-572	-21	multi-exon	FALSE	canonical	0	0	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAATCTCGCTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	106918476	106921243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_106919095_106919188_106919384_106920410
ES_00010030	chr11	+	559	2	Intergenic	novelGene_768	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	116	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTGCAGGTGTGTGTGT	3810	False	NA	NA	False	NA	NA	NA	107029871	107033189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107029929_107032687
ES_00010034	chr11	+	13125	32	NIC	ENSMUSG00000020721.17	novel	13147	33	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	32.985507491541	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGAGTGTTTCTTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	107438758	107584652	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_107438808_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ES_00010038	chr11	+	3085	12	FSM	ENSMUSG00000020604.14	ENSMUST00000106697.8	3232	12	137	10	137	-5	multi-exon	FALSE	canonical	1	1	junction_1	1.89823754707465	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCACAAATGCATTGCCA	NA	False	NA	NA	False	AATAAA	-10	NA	109376568	109464146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_109376584_109380593_109381477_109408067_109408256_109412482_109412531_109416208_109416321_109418571_109418710_109424734_109424932_109426082_109426164_109438839_109438949_109448776_109448898_109454007_109454099_109463044
ES_00010039	chr11	+	2622	5	NIC	ENSMUSG00000041623.18	novel	2062	5	NA	NA	0	0	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575272	113585473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ES_00010041	chr11	+	1866	4	FSM	ENSMUSG00000051043.17	ENSMUST00000177952.8	1809	4	-57	0	-57	0	multi-exon	FALSE	canonical	0	0	junction_1	17.2819751957543	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTTGCTTTGGGCTTGT	569	False	NA	NA	False	AATAAA	-18	NA	114742308	114759921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114742400_114754292_114755373_114757450_114757546_114759321
ES_00010042	chr11	+	4019	5	FSM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-359	7	-57	-7	multi-exon	FALSE	canonical	3	20	junction_1	7.21110255092798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTTCCTGTGTGTTTC	569	False	NA	NA	False	ATTAAA	-31	NA	114742308	114763436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321_114759472_114761146
ES_00010043	chr11	+	2671	5	FSM	ENSMUSG00000016940.19	ENSMUST00000106533.8	2649	5	-22	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.97390157267426	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCTCCTTCAT	3736	False	NA	28	True	NA	NA	NA	115310953	115322100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105
ES_00010044	chr11	+	463	2	Intergenic	novelGene_787	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATCCCAGC	NA	False	NA	NA	False	NA	NA	NA	115356189	115400566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115356220_115400133
ES_00010045	chr11	+	450	1	Intergenic	novelGene_789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAATCCCAG	5476	False	NA	NA	False	NA	NA	NA	115400115	115400565	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115400100_115400600
ES_00010048	chr11	+	494	3	FSM	ENSMUSG00000020781.15	ENSMUST00000157061.2	494	3	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	9.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCCATCCTTGGCTCCA	3597	False	NA	NA	False	NA	NA	NA	115711671	115713095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115711834_115712481_115712543_115712824
ES_00010050	chr11	+	3797	27	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	202.96016457021	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAACAACCTGAGGACCC	6805	False	NA	34	True	AATAAA	-19	NA	115714879	115746600	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_115715004_115723487_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
ES_00010052	chr11	+	863	4	FSM	ENSMUSG00000020782.19	ENSMUST00000147878.8	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_1	47.2252286624662	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGGAGAGGGGAGCTCC	NA	False	NA	NA	False	GGGGCT	-38	NA	115745058	115746410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115745182_115745372_115745932_115746017_115746080_115746291
ES_00010053	chr11	+	2713	25	ISM	ENSMUSG00000034427.18	ENSMUST00000222123.2	5154	43	6462	285	-2440	-281	3prime_fragment	TRUE	canonical	2	5	junction_21	3.43996124009172	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTGCTGGGCAGCATG	8010	False	NA	NA	False	NA	NA	NA	115774821	115783133	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_115774912_115775005_115775232_115775901_115776015_115776219_115776280_115776846_115776923_115777016_115777136_115777216_115777336_115777409_115777552_115777687_115777800_115777887_115778031_115778390_115778534_115778692_115778757_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
ES_00010054	chr11	+	3517	24	ISM	ENSMUSG00000020758.16	ENSMUST00000068981.13	5584	38	11035	260	-1117	-259	3prime_fragment	FALSE	canonical	1	3	junction_1	5.74439810953521	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTTCCTCTGCTGCTCT	2124	False	NA	NA	False	NA	NA	NA	115879646	115898978	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_115879846_115880544_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ES_00010055	chr11	+	3605	16	NNC	ENSMUSG00000020770.14	novel	3696	16	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_13	33.4644089543901	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8829	False	NA	19	True	AATAAA	-13	NA	115921154	115952040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943946_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949152_115949251_115949814_115950073_115950648
ES_00010056	chr11	+	1809	6	FSM	ENSMUSG00000061878.17	ENSMUST00000063446.13	2527	6	714	4	-64	0	multi-exon	FALSE	canonical	0	0	junction_4	1.49666295470958	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGATCCTATCCTGGG	NA	False	NA	NA	False	AATAAA	-14	NA	116424012	116427496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116424195_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
ES_00010057	chr11	+	526	3	NNC	ENSMUSG00000075410.14	novel	934	6	NA	NA	1004	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTGTAAAGACTGCTTTC	NA	False	NA	NA	False	AATAAA	-38	NA	116548985	116559214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_116549076_116550123_116550203_116558857
ES_00010058	chr11	+	1159	5	FSM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	-8	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	29.8862426544388	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTGGTAGCATTGTG	NA	False	NA	-2	True	AATAAA	-11	NA	116562494	116566619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
ES_00010059	chr11	+	519	2	FSM	ENSMUSG00000090266.11	ENSMUST00000176765.2	427	2	-19	-73	5	-5	multi-exon	FALSE	canonical	3	21	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTGAATCAAAGTCTAT	8956	False	NA	19	True	AATAAA	-24	NA	116734391	116736954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116734601_116736644
ES_00010060	chr11	+	1785	3	FSM	ENSMUSG00000090266.11	ENSMUST00000175930.8	1785	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAATACATAAGAGAAG	8945	False	NA	NA	False	NA	NA	NA	116734380	116741186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116734601_116739079_116739185_116739726
ES_00010061	chr11	+	1064	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	9063	False	NA	15	True	ATTAAA	-17	NA	116734498	116740566	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ES_00010062	chr11	+	2312	14	NNC	ENSMUSG00000020818.17	novel	3298	13	NA	NA	-72	0	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_1	21.0108453257306	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116744048	116765538	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_116744166_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ES_00010063	chr11	+	207	1	Genic_Genomic	ENSMUSG00000020818.17	novel	NA	NA	NA	NA	7089	28	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACACAGTCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116766282	116766489	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_116766300_116766500
ES_00010064	chr11	+	4239	17	NIC	ENSMUSG00000043857.17	novel	4258	18	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_11	6.60462669270565	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAAATTGGTGGGATTT	1813	False	NA	NA	False	AATAAA	-24	NA	116809693	116877766	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864258_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ES_00010066	chr11	+	2193	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	-39	-1	-20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	855	False	NA	20	True	AATAAA	-16	NA	116967588	116969781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116967600_116969800
ES_00010068	chr11	+	2900	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117198992	117253139	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ES_00010069	chr11	+	4863	9	FSM	ENSMUSG00000059248.14	ENSMUST00000155331.8	4863	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	113.195558106314	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATACCCCTAAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	117223253	117252455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117250297_117251248
ES_00010073	chr11	+	2665	15	ISM	ENSMUSG00000050106.19	ENSMUST00000119455.2	2736	16	270	-20	270	-7	3prime_fragment	FALSE	canonical	2	6	junction_1	4.94510683733456	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTATATATTTGGAAATA	8245	False	NA	NA	False	NA	NA	NA	117673753	117683929	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_117674097_117674220_117674370_117674596_117674747_117674935_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
ES_00010077	chr11	+	675	4	FSM	ENSMUSG00000033857.13	ENSMUST00000139813.3	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_3	2.05480466765633	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGTGGCACAGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	118371947	118373772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_118372251_118372699_118372858_118373357_118373507_118373707
ES_00010078	chr11	+	1361	4	FSM	ENSMUSG00000039963.21	ENSMUST00000126652.2	1662	4	301	0	301	0	multi-exon	FALSE	canonical	1	1	junction_1	4.02768199119819	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTCAGAAGAGTT	4932	False	NA	NA	False	AATAAA	-13	NA	119150053	119156062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119150096_119150680_119150870_119153900_119154060_119155091
ES_00010079	chr11	+	1470	3	FSM	ENSMUSG00000025579.15	ENSMUST00000106258.2	1369	3	-200	99	-59	-99	multi-exon	FALSE	canonical	3	394	junction_2	31.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACCCACAACGAACTAGG	NA	False	NA	NA	False	NA	NA	NA	119158653	119164179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119159049_119160913_119161505_119163695
ES_00010081	chr11	+	571	3	NNC	ENSMUSG00000087675.2	novel	1705	4	NA	NA	17273	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	3	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAGAACTAACCTCACTG	2124	False	NA	NA	False	ATTAAA	-17	NA	119456728	119459872	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_119456892_119459088_119459263_119459638
ES_00010082	chr11	+	2398	14	FSM	ENSMUSG00000025583.16	ENSMUST00000147772.8	3662	14	-19	1283	1	-1283	multi-exon	FALSE	canonical	3	94	junction_8	9.2863710022017	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGACTGAGCCACACTT	2151	False	NA	NA	False	NA	NA	NA	119493821	119734582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507
ES_00010083	chr11	+	5977	33	FSM	ENSMUSG00000025583.16	ENSMUST00000147781.8	6138	33	0	161	0	8	multi-exon	TRUE	canonical	2	3	junction_9	25.2707216952742	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCTTGCCAGATGAGAAT	2853	False	NA	16	True	AATAAA	-23	NA	119494523	119790241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119762320_119762425_119763041_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
ES_00010084	chr11	+	356	3	FSM	ENSMUSG00000025371.13	ENSMUST00000137055.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	7.5	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCAGGCAGAGCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	119807556	119809454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_119807836_119808809_119808865_119809432
ES_00010085	chr11	+	10724	28	FSM	ENSMUSG00000039741.16	ENSMUST00000044985.14	10726	28	-12	14	-12	0	multi-exon	TRUE	canonical	1	2	junction_4	8.87746179075781	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCAGTGGTCCGGATTGTG	NA	False	NA	NA	False	AATAAA	-21	NA	120123760	120183108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120123934_120127685_120128084_120149897_120150078_120159132_120159256_120162184_120163931_120164140_120164250_120164519_120164699_120164809_120164969_120165244_120165523_120165697_120166029_120166883_120167700_120169880_120170081_120170195_120170333_120170895_120171025_120172944_120173060_120173921_120174215_120174821_120175001_120175079_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ES_00010086	chr11	+	735	5	FSM	ENSMUSG00000025380.3	ENSMUST00000026445.3	1713	5	978	0	978	0	multi-exon	FALSE	canonical	0	0	junction_3	0.5	304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTGGGCTCAAGCTG	284	False	NA	NA	False	ATTAAA	-14	NA	120253337	120258994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120253361_120257466_120257624_120258062_120258185_120258482_120258651_120258729
ES_00010087	chr11	+	862	3	FSM	ENSMUSG00000049957.15	ENSMUST00000145702.2	1074	3	212	0	212	0	multi-exon	FALSE	canonical	3	99	junction_1	17.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTGGGTAAGGGAGAGG	560	False	NA	NA	False	NA	NA	NA	120350838	120353358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120351091_120352541_120352625_120352831
ES_00010088	chr11	+	3166	21	ISM	ENSMUSG00000025793.18	ENSMUST00000106203.9	2903	22	24	0	24	0	intron_retention	FALSE	canonical	3	105	junction_14	77.2154615345916	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8206	False	NA	13	True	AATAAA	-14	NA	120358484	120374805	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369912_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840
ES_00010090	chr11	+	2933	1	FSM	ENSMUSG00000053613.7	ENSMUST00000151998.2	2659	1	-261	-13	-261	13	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGACTGATGACGGTGGT	NA	False	NA	NA	False	NA	NA	NA	120549721	120552654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120549700_120552700
ES_00010091	chr11	+	2875	2	FSM	ENSMUSG00000025142.19	ENSMUST00000169964.2	505	2	-547	-1823	-547	187	multi-exon	FALSE	canonical	3	898	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGGCTGTTGGGTAGA	NA	False	NA	NA	False	NA	NA	NA	120563251	120566995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120563997_120564865
ES_00010092	chr11	+	2413	17	FSM	ENSMUSG00000025145.14	ENSMUST00000145781.8	2390	17	-23	0	3	0	multi-exon	FALSE	canonical	1	1	junction_12	14.0844273490263	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTCGTCCAGTTCC	6067	False	NA	NA	False	AATACA	-19	NA	120604753	120611949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ES_00010093	chr11	+	1591	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	35064	multi-exon	FALSE	non_canonical	0	0	junction_2	980	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGGCCACCACTGCC	NA	False	NA	NA	False	NA	NA	NA	120653618	120690309	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_120653817_120653849_120655216_120690282
ES_00010100	chr11	+	3900	37	NNC	ENSMUSG00000039230.15	novel	3906	39	NA	NA	9	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_21	53.6948037005858	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCCAGCCTCTGCCTATC	NA	False	NA	31	True	ATTAAA	-13	NA	121342783	121507988	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469662_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
ES_00010104	chr11	-	485	1	FSM	ENSMUSG00000081059.4	ENSMUST00000120551.2	476	1	0	-9	0	9	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCAGCTCACAGATGCAC	NA	False	NA	NA	False	NA	NA	NA	3421377	3420892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3420900_3421400
ES_00010105	chr11	-	4930	4	NNC	ENSMUSG00000056579.19	novel	4720	4	NA	NA	-43	24836	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1146.47556547108	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCAGGCCTCAGGTCAT	NA	False	NA	NA	False	NA	NA	NA	3597325	3564948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3564979_3589800_3593180_3594771_3595524_3596556
ES_00010106	chr11	-	11765	1	FSM	ENSMUSG00000056579.19	ENSMUST00000193809.2	1612	1	-1404	-8749	-1404	472	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTTTGACACTGGCAAG	NA	False	NA	NA	False	AATAAA	-17	NA	3601077	3589312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3589300_3601100
ES_00010108	chr11	-	235	2	Intergenic	novelGene_436	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCTATAGGTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	3788067	3776950	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_3777030_3787911
ES_00010109	chr11	-	1897	10	FSM	ENSMUSG00000020432.13	ENSMUST00000020710.11	1897	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	45.2714719535328	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881995	3867191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881975
ES_00010110	chr11	-	2631	12	FSM	ENSMUSG00000003585.14	ENSMUST00000003681.8	2631	12	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_11	8.90816321700644	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4068831	4047038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624
ES_00010111	chr11	-	2599	11	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	5.85149553533112	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGAGCAGAATTCATTG	NA	False	NA	-5	True	AATAAA	-17	NA	4073421	4047043	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4073165
ES_00010113	chr11	-	4391	10	NNC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	0	75	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	77.9103631833277	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTTGTGCACTGTGTG	NA	False	NA	55	True	GATAAA	-15	NA	4391082	4295738	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4371588_4374041_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ES_00010114	chr11	-	1809	12	NNC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	0	14	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	68.3951813101353	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTAACATGGGGTTTAA	NA	False	NA	-6	True	AATAAA	-25	NA	4391105	4295799	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
ES_00010115	chr11	-	247	1	Intergenic	novelGene_441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGGCAGTGGAAGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	4645671	4645424	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_4645400_4645700
ES_00010116	chr11	-	4455	16	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	81.0748351147808	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCGTCGAGTTTTTTTT	9018	False	NA	-10	True	AATAAA	-19	NA	4799363	4715846	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ES_00010118	chr11	-	3572	5	FSM	ENSMUSG00000034201.14	ENSMUST00000122886.8	3571	5	0	-1	0	1	multi-exon	FALSE	canonical	2	4	junction_1	64.4607438678767	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	5015294	5004130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5006690_5012154_5012327_5012593_5012702_5013825_5014479_5015214
ES_00010119	chr11	-	2702	4	ISM	ENSMUSG00000034201.14	ENSMUST00000122886.8	3571	5	-6	6340	0	-2	5prime_fragment	FALSE	canonical	3	6	junction_1	62.8773055685082	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTGGGATTCTAGAGTT	NA	False	NA	15	True	AGTAAA	-44	NA	5015300	5010471	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_5012327_5012593_5012702_5013825_5014479_5015214
ES_00010121	chr11	-	2379	17	NNC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	1342	junction_9	1044.5656674397	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAACTGTCATCCTCCTC	NA	False	NA	-23	True	AATAAA	-13	NA	5049064	5019698	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029523_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ES_00010124	chr11	-	4344	8	NIC	ENSMUSG00000041961.15	novel	6311	9	NA	NA	12	-723	intron_retention	FALSE	canonical	3	35	junction_3	4.75093975666168	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCAACTTCTGTTGAAAA	6444	False	NA	NA	False	AATATA	-19	NA	5394835	5229324	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_5232506_5233337_5233441_5236093_5236262_5237372_5237484_5239025_5239158_5239662_5239738_5288637_5288764_5394387
ES_00010128	chr11	-	347	1	FSM	ENSMUSG00000080904.2	ENSMUST00000119907.2	87	1	-154	-106	-154	106	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCCACAAAACCTAACATAG	NA	False	NA	NA	False	NA	NA	NA	5768737	5768390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5768400_5768700
ES_00010129	chr11	-	1630	12	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	39	29454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	851.222125792097	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTCACAAGGAAGTCACAA	9544	False	NA	NA	False	NA	NA	NA	5828253	5792725	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_5792753_5822183_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ES_00010130	chr11	-	472	4	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	741	11	741	-11	3prime_fragment	FALSE	canonical	3	77	junction_3	8.80656320908194	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAACTAGAACTGAGGTGT	NA	False	NA	-9	True	AATAAA	-9	NA	5848041	5846647	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831
ES_00010132	chr11	-	470	2	Genic_Genomic	ENSMUSG00000083022.2	novel	393	1	NA	NA	0	75738	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGCTTTTTTTTTGCTAG	NA	False	NA	NA	False	NA	NA	NA	6123036	6046905	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_6046949_6122609
ES_00010134	chr11	-	774	6	NNC	ENSMUSG00000041126.17	novel	1633	5	NA	NA	-21	2611	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1298.9895457624	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTGGAGAGACCGCTCA	NA	False	NA	NA	False	NA	NA	NA	6394464	6374617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_6374647_6378137_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ES_00010136	chr11	-	2560	12	NNC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	229	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	157.931567982115	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6575793	6566422	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575444
ES_00010139	chr11	-	235	1	Intergenic	novelGene_457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCAAGTTCTCATTGCCC	NA	False	NA	NA	False	NA	NA	NA	6647647	6647412	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_6647400_6647600
ES_00010140	chr11	-	1003	1	FSM	ENSMUSG00000083819.2	ENSMUST00000118511.2	1461	1	-27	485	-27	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAGAAAATTGGAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	6733165	6732162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_6732200_6733200
ES_00010143	chr11	-	3162	3	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	0	-88	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_2	266.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	-9	True	AATAAA	-20	NA	11758948	11750375	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_11753064_11756095_11756216_11758594
ES_00010145	chr11	-	2286	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1139	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_14	27.3593807365173	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	4499	False	NA	-1	True	AATAAA	-21	NA	11831768	11764100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11831367
ES_00010146	chr11	-	5451	14	NNC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_9	141.024358968531	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414859	12186675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203079_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ES_00010147	chr11	-	5442	14	NIC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	235	junction_6	74.428711772371	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414955	12186675	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ES_00010148	chr11	-	5381	13	NNC	ENSMUSG00000020173.18	novel	5541	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_8	139.626958356902	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414960	12186675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203079_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ES_00010151	chr11	-	777	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109641.2	450	4	-63	-264	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2930.40759394775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTCAGGGCTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	16458132	16451386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16457979
ES_00010154	chr11	-	1477	1	FSM	ENSMUSG00000081302.2	ENSMUST00000119030.2	2042	1	610	-45	610	45	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGATTTTTACTCTGTTA	NA	False	NA	NA	False	AAGAAA	-6	NA	18277061	18275584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_18275600_18277100
ES_00010155	chr11	-	215	2	Antisense	novelGene_ENSMUSG00000045671.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	828	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19949893	19918256	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_19918416_19949837
ES_00010156	chr11	-	3613	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	0	7205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCACGTTTGAAGAGTCC	1382	False	NA	NA	False	NA	NA	NA	20062867	20005098	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_20005127_20012303_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ES_00010157	chr11	-	356	2	NNC	ENSMUSG00000085035.2	novel	627	2	NA	NA	-5121	185	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	301	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACATGTCTTGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	20101465	20095381	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_20095695_20101422
ES_00010161	chr11	-	1503	8	NNC	ENSMUSG00000001891.17	novel	2683	10	NA	NA	-6809	-1	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	143.823020495642	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGGTACTTTATTTAC	NA	False	NA	-42	True	AATAAA	-22	NA	21286701	21271940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21286551
ES_00010162	chr11	-	1438	10	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	0	8993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	446.622662287905	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGGGGTTCAGGAATGA	NA	False	NA	NA	False	NA	NA	NA	21521934	21497698	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_21497733_21507245_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ES_00010165	chr11	-	2717	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	10	-125	10	7	multi-exon	FALSE	canonical	3	85	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAGTGATACTCTTTCT	3592	False	NA	-21	True	AATAAA	-28	NA	22810478	22784739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_22787196_22810217
ES_00010167	chr11	-	553	2	FSM	ENSMUSG00000020288.14	ENSMUST00000153409.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAGCTTACCGCCCAG	NA	False	NA	-18	True	AATAAA	-6	NA	23441077	23440426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_23440571_23440668
ES_00010170	chr11	-	245	2	Intergenic	novelGene_493	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTGCCTACAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	23557726	23507459	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_23507496_23557517
ES_00010172	chr11	-	360	1	FSM	ENSMUSG00000085893.2	ENSMUST00000146791.2	830	1	380	90	380	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATCAGGAATTCACTGA	NA	False	NA	NA	False	NA	NA	NA	29552233	29551873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29551900_29552200
ES_00010173	chr11	-	248	1	FSM	ENSMUSG00000078157.2	ENSMUST00000104962.2	3274	1	2813	213	2813	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAAAAGTTACTGAACAG	NA	False	NA	NA	False	NA	NA	NA	29772855	29772607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29772600_29772900
ES_00010175	chr11	-	1007	1	Genic_Genomic	ENSMUSG00000081887.2	novel	NA	NA	NA	NA	1458	801	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTGTTCATGGAGGAAC	NA	False	NA	NA	False	NA	NA	NA	30522996	30521989	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_30522000_30523000
ES_00010176	chr11	-	2583	14	NNC	ENSMUSG00000020311.18	novel	2532	14	NA	NA	-31	-200	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_8	23.8991965897002	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGTCTTTTCATGTAA	NA	False	NA	NA	False	AATAAA	-8	NA	30904366	30880973	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899905_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
ES_00010178	chr11	-	1664	15	NNC	ENSMUSG00000020311.18	novel	2532	14	NA	NA	-31	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	26.0243214344284	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGATTGAAAATCATCACT	NA	False	NA	-33	True	ATTAAA	-26	NA	30904366	30881750	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913_30904133_30904237
ES_00010179	chr11	-	4113	2	Intergenic	novelGene_507	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	12	junction_1	0	285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATTGCATACCATCATTT	NA	False	NA	NA	False	NA	NA	NA	31937018	31930693	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_31934750_31936961
ES_00010181	chr11	-	709	3	FSM	ENSMUSG00000020282.19	ENSMUST00000142274.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	19	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCGTCTTCCTGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	32160900	32159949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_32160224_32160397_32160759_32160826
ES_00010183	chr11	-	579	1	FSM	ENSMUSG00000083303.2	ENSMUST00000121601.2	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGCCTCGGTTTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	32830940	32830361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_32830400_32830900
ES_00010184	chr11	-	5227	23	NNC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	29080	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	58.3831742998127	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGGGCTCCCTTCTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	33434014	33161794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33354081_33354200_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005
ES_00010185	chr11	-	4899	27	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	0	-11	combination_of_known_splicesites	FALSE	canonical	3	45	junction_25	39.8224610285058	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAAGAACGCTGTGGG	NA	False	NA	NA	False	ATTAAA	-8	NA	33463746	33161805	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33454681_33454829_33463601
ES_00010186	chr11	-	3720	29	NNC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	1	-1409	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_28	64.5402500580144	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTTTCAAGTCTATCTG	NA	False	NA	1	True	NA	NA	NA	33463745	33163203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33354037_33354200_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33454681_33454827_33463601
ES_00010187	chr11	-	1009	1	FSM	ENSMUSG00000098456.3	ENSMUST00000184486.2	980	1	191	-220	191	220	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGGCAACACAAATTGGAC	NA	False	NA	NA	False	AATAAA	-30	NA	33226546	33225537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33225500_33226500
ES_00010188	chr11	-	272	1	FSM	ENSMUSG00000069913.4	ENSMUST00000118265.2	388	1	63	53	63	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGAGCCTAGACCTGTT	NA	False	NA	NA	False	AATAAA	-41	NA	33345203	33344931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33344900_33345200
ES_00010190	chr11	-	1351	5	Intergenic	novelGene_516	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	7.32717544487642	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCAGAGATGGTTTTTG	NA	False	NA	NA	False	AATAAA	-29	NA	33494372	33481419	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_33481439_33487362_33487917_33490994_33491103_33492017_33492568_33494252
ES_00010193	chr11	-	2142	16	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	0	88940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	242.348564399847	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAAGTACA	NA	False	NA	NA	False	NA	NA	NA	35725333	35610267	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_35610301_35699207_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ES_00010194	chr11	-	2403	14	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	0	44931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.2382220252308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGATGCCCAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	35766539	35684295	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_35684321_35729227_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440
ES_00010195	chr11	-	634	6	FSM	ENSMUSG00000018848.5	ENSMUST00000137815.2	634	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	415.388781745487	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGGAGACAAGGAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	35725288	35717321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_35717405_35718184_35718294_35719451_35719641_35723397_35723491_35723998_35724134_35725263
ES_00010196	chr11	-	887	6	FSM	ENSMUSG00000042032.14	ENSMUST00000141830.8	887	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	223.677803994943	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCTCGACAACCGCCC	NA	False	NA	NA	False	NA	NA	NA	40583448	40571482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40583304
ES_00010198	chr11	-	501	2	FSM	ENSMUSG00000041278.11	ENSMUST00000147984.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTCTCTCGGCGTCCTCT	NA	False	NA	73	True	NA	NA	NA	43638819	43635844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_43636275_43638748
ES_00010199	chr11	-	1404	4	FSM	ENSMUSG00000041231.16	ENSMUST00000129054.8	1398	4	0	-6	0	4	multi-exon	FALSE	canonical	3	211	junction_3	11.8602979164381	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTTTTATAATGTCT	NA	False	NA	NA	False	AATAAA	-22	NA	44351657	44345393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547
ES_00010201	chr11	-	262	1	FSM	ENSMUSG00000083460.2	ENSMUST00000118655.2	1008	1	428	318	428	-318	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTTCTGTGCTCCTAC	NA	False	NA	NA	False	NA	NA	NA	48625960	48625698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_48625700_48626000
ES_00010202	chr11	-	684	5	ISM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	4976	1219	18	763	3prime_fragment	FALSE	canonical	3	37	junction_2	3.39116499156263	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACCCATCATAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48703204	48698449	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126
ES_00010203	chr11	-	204	2	Antisense	novelGene_ENSMUSG00000020381.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	30	junction_1	0	127	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAATAAATCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50081282	50058239	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_50058358_50081196
ES_00010204	chr11	-	2025	9	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	0	650	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.316672643749	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGGGACTATATCTACC	NA	False	NA	NA	False	NA	NA	NA	50101618	50089542	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50089573_50090984_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ES_00010206	chr11	-	784	5	FSM	ENSMUSG00000020377.16	ENSMUST00000102772.4	649	5	-132	-3	-48	0	multi-exon	FALSE	canonical	1	2	junction_4	0.82915619758885	5673	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCATTCTCTGGGTCT	NA	False	NA	NA	False	ATTAAA	-17	NA	50129491	50127295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50127540_50127843_50127926_50128020_50128092_50128167_50128268_50129204
ES_00010207	chr11	-	5625	6	NNC	ENSMUSG00000050567.17	novel	5528	5	NA	NA	-64	5425	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.0580151011438	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGGAAGGAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50183202	50141035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50141066_50146457_50149656_50151803_50151901_50154076_50154311_50156421_50157838_50182552
ES_00010208	chr11	-	2476	18	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-56	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_17	12.7347167373532	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGCCTCCAGCTTG	749	False	NA	-2	True	AATAAA	-30	NA	50312874	50280114	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
ES_00010209	chr11	-	2393	6	NIC	ENSMUSG00000044807.14	novel	5325	5	NA	NA	16	457	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	11.4786758818254	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACCTGTGTGTATGTAT	312	False	NA	NA	False	AATAAA	-27	NA	50718535	50704933	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_50706821_50707945_50708039_50708115_50708187_50708635_50708763_50717252_50717338_50718405
ES_00010211	chr11	-	3014	6	NNC	ENSMUSG00000049321.18	novel	2782	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	23.8109218637162	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGGTATTT	NA	False	NA	1	True	NA	NA	NA	50806961	50789537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801576_50801704_50803106_50803229_50806935
ES_00010213	chr11	-	3084	6	NNC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_5	17.9710878913882	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGGTATTT	NA	False	NA	1	True	NA	NA	NA	50806984	50789537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803232_50806935
ES_00010218	chr11	-	1792	10	NNC	ENSMUSG00000020358.18	novel	1437	8	NA	NA	-12613	33592	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1184.23619182353	2552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAAAAAGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	51510287	51457334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_51457366_51491702_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493_51497627_51510213
ES_00010219	chr11	-	494	2	FSM	ENSMUSG00000001054.10	ENSMUST00000132854.2	494	2	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACCACTAACATTGCCAG	NA	False	NA	NA	False	NA	NA	NA	51526580	51520158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51520489_51526416
ES_00010220	chr11	-	2652	6	NIC	ENSMUSG00000001053.16	novel	2367	5	NA	NA	-96	-17	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	177.830706009958	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTCTTATGTGTTTGAAA	NA	False	NA	-17	True	AATATA	-15	NA	51541765	51533906	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51540975_51541182_51541504
ES_00010221	chr11	-	846	4	FSM	ENSMUSG00000001053.16	ENSMUST00000156835.8	846	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	175.598658562328	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCACCCCTGAGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	51541664	51536380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51536513_51536753_51537102_51540975_51541182_51541504
ES_00010222	chr11	-	262	2	Intergenic	novelGene_537	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	313	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAGTAAACAGAATAAACA	8943	False	NA	NA	False	NA	NA	NA	51629031	51606188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_51606326_51628906
ES_00010224	chr11	-	2350	2	Genic_Genomic	ENSMUSG00000081297.2	novel	596	1	NA	NA	-1691	1196	multi-exon	FALSE	canonical	2	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTGTAGTTTCTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	52371621	52368138	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_52368313_52369445
ES_00010225	chr11	-	228	1	Intergenic	novelGene_546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	696	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGAGTTTAATCTAGGT	NA	False	NA	NA	False	TTTAAA	-5	NA	53229128	53228900	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_53228900_53229100
ES_00010226	chr11	-	3070	7	NNC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	0	24198	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.297531641572	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGATAACTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	54678467	54584083	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_54584114_54608276_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ES_00010227	chr11	-	3019	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-60	44	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	245.457735669504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGAGAATCTTCTAGCAT	NA	False	NA	32	True	AATAAA	-16	NA	54678561	54608237	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54678385
ES_00010228	chr11	-	349	3	FSM	ENSMUSG00000020268.15	ENSMUST00000135853.2	349	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	14.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCCCCCAAAGATAACAA	NA	False	NA	NA	False	NA	NA	NA	54751411	54740999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54741242_54744052_54744126_54751377
ES_00010229	chr11	-	2726	18	NIC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGGCTAATTCTT	3617	False	NA	-2	True	CATAAA	-21	NA	54846913	54801609	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ES_00010230	chr11	-	2722	18	NNC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_17	69.342188459451	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGGCTAATTCTT	3617	False	NA	-2	True	CATAAA	-21	NA	54846913	54801609	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831705_54846846
ES_00010233	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ES_00010234	chr11	-	5691	15	NIC	ENSMUSG00000055333.15	novel	14528	24	NA	NA	26253	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_14	2.93205367882483	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGTCGCTTAGAGC	8225	False	NA	NA	False	AATAAA	-21	NA	55176830	55141434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_55143325_55144349_55144808_55146929_55147084_55147329_55147772_55151271_55151418_55152887_55153699_55156687_55156886_55158402_55158547_55159000_55159139_55160079_55160295_55160911_55161296_55163820_55164055_55166809_55166964_55169712_55169910_55176704
ES_00010235	chr11	-	525	5	NNC	ENSMUSG00000018585.10	novel	541	4	NA	NA	0	713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1232.51997955408	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGTGAGGCAATATG	NA	False	NA	NA	False	TTTAAA	-42	NA	55352023	55336753	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_55336779_55337465_55337611_55341282_55341452_55345706_55345783_55351913
ES_00010236	chr11	-	2612	15	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	0	19	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_14	169.409734558748	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGGTAAATACCTAAATAT	NA	False	NA	NA	False	AATAAA	-40	NA	57409428	57373799	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57408930_57408979_57409398
ES_00010237	chr11	-	2828	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	75	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_13	167.998802475304	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409353	57373818	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405118_57408930
ES_00010238	chr11	-	2581	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_12	137.86692837961	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409443	57373818	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404899_57405118_57409398
ES_00010239	chr11	-	2850	4	FSM	ENSMUSG00000049755.15	ENSMUST00000057836.12	2862	4	5	7	-4	-7	multi-exon	FALSE	canonical	1	2	junction_2	10.1434160364686	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGGCTCGTGGTTTCA	643	False	NA	NA	False	NA	NA	NA	58214144	58205956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_58208361_58210149_58210417_58213425_58213556_58214095
ES_00010240	chr11	-	440	3	NIC	ENSMUSG00000049755.15	novel	423	3	NA	NA	17	-41	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACTGACTTGCAGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	58221140	58210604	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_58210781_58213394_58213556_58221037
ES_00010241	chr11	-	464	4	FSM	ENSMUSG00000020444.20	ENSMUST00000151211.2	511	4	47	0	47	0	multi-exon	FALSE	canonical	3	800	junction_2	28.2488937836511	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGAGGTGGGGGAAAC	8014	False	NA	NA	False	NA	NA	NA	59076234	59074935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019
ES_00010250	chr11	-	1844	9	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	1	2	combination_of_known_splicesites	FALSE	canonical	3	12	junction_8	136.995209770269	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGTCTAAGCAGTTAC	NA	False	NA	2	True	NA	NA	NA	60307843	60291449	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307576
ES_00010252	chr11	-	2607	14	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	0	69740	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	423.231496238505	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	60701917	60609189	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_60609338_60661334_60661358_60679177_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ES_00010253	chr11	-	1283	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	8	0	-8	multi-exon	FALSE	canonical	3	28	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACTTGTATTTATGGGTA	NA	False	NA	NA	False	NA	NA	NA	60822693	60811750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60812732_60822391
ES_00010255	chr11	-	3509	11	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	78	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.2758409443868	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1469	False	NA	NA	False	AATAAA	-14	NA	61157875	61135678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61137148_61138754_61139309_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
ES_00010256	chr11	-	3146	11	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.2758409443868	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1391	False	NA	NA	False	AATAAA	-14	NA	61157953	61135678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61137148_61138754_61138868_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
ES_00010257	chr11	-	1609	10	ISM	ENSMUSG00000069855.10	ENSMUST00000093029.9	2377	17	16988	-4	16712	4	3prime_fragment	FALSE	canonical	2	5	junction_9	4.57043640026736	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTGAGAATATTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	61216698	61192452	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61216622
ES_00010259	chr11	-	2992	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	27	0	-3	0	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385095	61379637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
ES_00010260	chr11	-	3029	7	NIC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	42	junction_5	71.8410668690888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	-4	True	AATACA	-14	NA	61385014	61379642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384349_61384781_61384905
ES_00010262	chr11	-	2885	7	NNC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	23	junction_6	78.9523414613032	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	-4	True	AATACA	-14	NA	61385014	61379642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384760_61384905
ES_00010270	chr11	-	748	6	NNC	ENSMUSG00000014243.6	novel	732	5	NA	NA	0	64413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	117.43491814618	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGAATGGGGTAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	62172201	62093636	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62093655_62158051_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
ES_00010271	chr11	-	8709	48	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	-280	combination_of_known_junctions	FALSE	canonical	3	93	junction_29	97.7225217798586	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTTTCTCAGGTTTCAAAC	NA	False	NA	19	True	NA	NA	NA	62348149	62207795	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00010273	chr11	-	8130	47	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	-280	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_9	110.78294996876	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTTTCTCAGGTTTCAAAC	NA	False	NA	19	True	NA	NA	NA	62348149	62207795	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212269_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224845_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00010274	chr11	-	6477	32	NIC	ENSMUSG00000018501.18	novel	8852	45	NA	NA	2	-311	combination_of_known_junctions	FALSE	canonical	3	93	junction_29	93.8890127872501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTACATCATTTGTGAC	7293	False	NA	-12	True	AATAAA	-23	NA	62274087	62207826	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269322_62269481_62272233_62272297_62273986
ES_00010275	chr11	-	8538	48	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	10	-311	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_47	116.528871177993	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTACATCATTTGTGAC	NA	False	NA	-12	True	AATAAA	-23	NA	62348139	62207826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62337623_62337716_62347973
ES_00010276	chr11	-	7137	36	NIC	ENSMUSG00000018501.18	novel	8852	45	NA	NA	45	-313	combination_of_known_junctions	FALSE	canonical	3	109	junction_33	86.961525623551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACAGTACATCATTTGTG	NA	False	NA	-14	True	AATAAA	-21	NA	62283440	62207828	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330
ES_00010277	chr11	-	8426	47	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	31	-313	combination_of_known_junctions	FALSE	canonical	3	136	junction_28	94.3605381137639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACAGTACATCATTTGTG	NA	False	NA	-14	True	AATAAA	-21	NA	62348118	62207828	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00010279	chr11	-	559	4	FSM	ENSMUSG00000046417.15	ENSMUST00000143262.2	567	4	8	0	-1	0	multi-exon	FALSE	canonical	2	4	junction_3	67.1532244613433	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCAACCGACTGACCCG	5952	False	NA	NA	False	NA	NA	NA	62538867	62496852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538770
ES_00010280	chr11	-	2942	5	NIC	ENSMUSG00000047342.18	novel	3051	6	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	17.8535710713571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	62680294	62669212	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755_62679916_62680201
ES_00010281	chr11	-	641	5	FSM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.1243556529821	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACATTTTTTCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	62680235	62674341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ES_00010282	chr11	-	1094	1	FSM	ENSMUSG00000081600.4	ENSMUST00000119246.2	1002	1	-46	-46	-46	46	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTCGGTTGCTGAGGAG	NA	False	NA	NA	False	AAGAAA	-43	NA	63204183	63203089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_63203100_63204200
ES_00010283	chr11	-	2708	21	NNC	ENSMUSG00000033389.17	novel	4074	21	NA	NA	4069	-1242	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	5.82987993015294	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGGCCCTGAGACACC	NA	False	NA	NA	False	NA	NA	NA	65049324	64894108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_64894277_64896279_64896332_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65049070
ES_00010284	chr11	-	3688	12	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	0	-28	combination_of_known_junctions	FALSE	canonical	3	50	junction_10	82.1603954379018	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATACAGGAGAGTTATC	NA	False	NA	-29	True	ATTAAA	-14	NA	65679111	65579096	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65666558_65666592_65678961
ES_00010286	chr11	-	4447	15	FSM	ENSMUSG00000020905.12	ENSMUST00000108677.2	4447	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	6.60086574408453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTTCCTTTCCTTCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	67812979	67745348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_67747371_67766088_67766254_67767198_67767358_67770636_67770971_67771090_67771218_67772031_67772110_67774031_67774136_67778575_67778688_67782175_67782312_67783838_67783975_67788046_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
ES_00010288	chr11	-	6756	29	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	0	531	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	94.3880126858041	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCAATGGAAGTGTGTTG	NA	False	NA	-5	True	AATAAA	-19	NA	68899277	68875991	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_68876157_68876295_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
ES_00010294	chr11	-	7261	40	FSM	ENSMUSG00000018474.19	ENSMUST00000108661.8	7261	40	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_39	13.548558783203	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69260232	69234098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013_69244181_69244489_69244722_69244887_69245013_69245190_69245309_69246164_69246297_69246456_69246599_69247032_69247207_69247361_69247484_69247763_69247902_69248190_69248392_69248530_69248723_69249068_69249169_69249952_69250085_69250652_69250865_69250997_69251202_69251370_69251602_69251874_69252069_69252210_69252362_69252496_69252628_69252861_69253149_69254445_69254571_69254798_69254970_69255517_69255631_69259961
ES_00010295	chr11	-	9044	40	NNC	ENSMUSG00000018474.19	novel	7261	40	NA	NA	-6170	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_35	12.905207425618	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69266402	69234098	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013_69244181_69244489_69244722_69244887_69245013_69245190_69245309_69246164_69246297_69246456_69246599_69247032_69247207_69247361_69247484_69247763_69247902_69248190_69248392_69248530_69248723_69249068_69249169_69249952_69250085_69250652_69250865_69250997_69251202_69251370_69251602_69251874_69252051_69252210_69252362_69252496_69252628_69252861_69253149_69254445_69254571_69254798_69254970_69255517_69255631_69264330
ES_00010297	chr11	-	1732	12	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	9460	1378	0	-1378	internal_fragment	FALSE	canonical	3	11	junction_4	4.90066617161584	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCACCACTGAAGCTGCC	NA	False	NA	NA	False	NA	NA	NA	69295041	69290711	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901_69293108_69294403_69294510_69294615_69294743_69294831
ES_00010298	chr11	-	220	2	Intergenic	novelGene_585	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTCCAGGAAGA	6524	False	NA	NA	False	NA	NA	NA	69413816	69360094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_69360117_69413618
ES_00010299	chr11	-	313	2	FSM	ENSMUSG00000005237.15	ENSMUST00000154985.2	386	2	73	0	73	0	multi-exon	FALSE	canonical	3	7	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCACAGGCTGGCCACTC	8699	False	NA	NA	False	NA	NA	NA	69407508	69406832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69406938_69407300
ES_00010300	chr11	-	1090	5	NNC	ENSMUSG00000005237.15	novel	2616	14	NA	NA	-1983	-7806	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	1.6583123951777	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGAGTGAAATCTCTCT	NA	False	NA	NA	False	TTTAAA	-6	NA	69437365	69414638	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69415229_69420208_69420380_69423194_69423254_69435202_69435383_69437275
ES_00010301	chr11	-	987	7	FSM	ENSMUSG00000041346.12	ENSMUST00000155894.2	985	7	0	-2	0	2	multi-exon	FALSE	canonical	3	9	junction_4	61.2880267443995	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCATTGTGTCTGTTCGG	NA	False	NA	-1	True	TATAAA	-18	NA	69454748	69452581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454145_69454263_69454372_69454464_69454684
ES_00010302	chr11	-	664	4	FSM	ENSMUSG00000018761.15	ENSMUST00000127118.2	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_2	21.5458168149231	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCAATAGAGCTGAGCTC	6912	False	NA	NA	False	NA	NA	NA	69549079	69548038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761
ES_00010303	chr11	-	524	4	FSM	ENSMUSG00000018761.15	ENSMUST00000137288.8	524	4	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_1	43.5150037981793	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGAAGGTGGGTACTCTG	6899	False	NA	NA	False	NA	NA	NA	69553330	69548558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69548848_69549391_69549525_69549636_69549703_69553294
ES_00010305	chr11	-	849	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	-144	-93	-53	0	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3197	False	NA	-1	True	AATAAA	-19	NA	69557032	69555038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
ES_00010307	chr11	-	1170	4	FSM	ENSMUSG00000005204.13	ENSMUST00000123084.8	1164	4	0	-6	0	5	multi-exon	FALSE	canonical	3	980	junction_2	50.2946871503895	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTCTTCCTTAAGGG	NA	False	NA	0	True	AATAAA	-22	NA	69565802	69563935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294
ES_00010308	chr11	-	2230	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	-11	0	5	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTCTTCCTTAAGGG	8292	False	NA	0	True	AATAAA	-22	NA	69572910	69563935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
ES_00010309	chr11	-	1205	6	FSM	ENSMUSG00000089669.8	ENSMUST00000018896.14	1407	6	0	202	0	-116	multi-exon	FALSE	canonical	3	10	junction_3	9.09065454189081	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCCCAAATTCTTTTG	4822	False	NA	-3	True	ATTAAA	-30	NA	69576380	69573873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854
ES_00010310	chr11	-	3000	5	NIC	ENSMUSG00000042826.14	novel	2534	6	NA	NA	-38	2	intron_retention	FALSE	canonical	2	7	junction_2	2.8613807855649	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGACATTTGTGAGT	3359	False	NA	3	True	ATTAAA	-22	NA	69692721	69686891	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_69689099_69689389_69689505_69690177_69690282_69690491_69690603_69692258
ES_00010311	chr11	-	1990	3	NNC	ENSMUSG00000089876.4	novel	1933	2	NA	NA	-144	8	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	35.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAAGTGTTTCCTTTGGT	NA	False	NA	2	True	ATTAAA	-20	NA	69696594	69694420	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69695757_69695845_69696282_69696376
ES_00010312	chr11	-	1183	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	0	21721	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7899.66008586586	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGAACCTCCATGCTCT	6467	False	NA	NA	False	NA	NA	NA	69812016	69785818	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69785855_69807545_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ES_00010313	chr11	-	1265	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	0	-6	0	0	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9889	False	NA	2	True	AATAAA	-32	NA	69871089	69859047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
ES_00010314	chr11	-	899	7	FSM	ENSMUSG00000018565.18	ENSMUST00000142788.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	199.487468278085	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9880	False	NA	2	True	AATAAA	-32	NA	69871098	69859047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69870655_69870737_69870824_69870886_69871039
ES_00010315	chr11	-	1050	6	NIC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	-21	0	intron_retention	FALSE	canonical	3	31	junction_3	218.340651276852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9920	False	NA	0	True	AATAAA	-30	NA	69871058	69859049	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_69859367_69859921_69860023_69860318_69860415_69865865_69866087_69870655_69870737_69870824
ES_00010319	chr11	-	618	2	FSM	ENSMUSG00000018293.5	ENSMUST00000108549.2	608	2	0	-10	0	0	multi-exon	FALSE	canonical	3	9692	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCCCTTCTTGCTTTGA	NA	False	NA	NA	False	ACTAAA	-16	NA	70545424	70543437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70543806_70545174
ES_00010321	chr11	-	4143	17	FSM	ENSMUSG00000040712.17	ENSMUST00000125687.2	4411	17	271	-3	271	0	multi-exon	FALSE	canonical	3	17	junction_14	4.99843725578305	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTCCGGCCTCTCTCTGC	NA	False	NA	0	True	ATTAAA	-17	NA	70574331	70560288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574104
ES_00010322	chr11	-	4377	21	FSM	ENSMUSG00000040712.17	ENSMUST00000108545.9	4377	21	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_16	7.40877857679658	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTCCGGCCTCTCTCTGC	8389	False	NA	0	True	ATTAAA	-17	NA	70578769	70560288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
ES_00010323	chr11	-	1075	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	0	5	0	3	multi-exon	FALSE	canonical	1	2	junction_5	4.07226390762354	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTGCGAGGTAGT	NA	False	NA	NA	False	ATTAAA	-16	NA	70590981	70579191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590883
ES_00010331	chr11	-	4655	20	FSM	ENSMUSG00000020807.16	ENSMUST00000142530.8	4653	20	0	-2	0	2	multi-exon	FALSE	canonical	1	2	junction_13	8.46207115305975	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTAGAGTATTGTACTAAA	NA	False	NA	NA	False	AAAAAG	-35	NA	72098285	72044752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486_72067607_72069230_72069398_72071228_72071453_72080373_72080585_72082103_72082171_72082244_72082461_72085385_72085449_72086608_72086716_72089188_72089790_72093237_72093381_72098021
ES_00010332	chr11	-	1447	2	Intergenic	novelGene_601	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTATTCTTTCTAAG	NA	False	NA	NA	False	AATAAA	-29	NA	72122977	72115351	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_72116591_72122769
ES_00010333	chr11	-	829	5	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4517	-1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	17.8518206354422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTAGCACAGAGCTCTC	NA	False	NA	-2	True	ATTAAA	-16	NA	72247605	72235548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72246035_72246165_72247574
ES_00010334	chr11	-	980	5	FSM	ENSMUSG00000040447.16	ENSMUST00000150491.2	980	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCCCCACTCTTAGGCT	NA	False	NA	NA	False	NA	NA	NA	72347176	72343433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_72343942_72344379_72344541_72344879_72345044_72345125_72345225_72347128
ES_00010335	chr11	-	230	1	Intergenic	novelGene_605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAAGGGGGTTTCTTT	2068	False	NA	NA	False	NA	NA	NA	72487898	72487668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_72487700_72487900
ES_00010338	chr11	-	705	4	FSM	ENSMUSG00000005949.10	ENSMUST00000130101.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.73053390247253	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTCCTCTTCTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	73079632	73077177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73077286_73078347_73078468_73078562_73078663_73079255
ES_00010339	chr11	-	600	6	FSM	ENSMUSG00000005949.10	ENSMUST00000150468.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	24.9447389242702	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATCTGACTATTGTG	4512	False	NA	NA	False	ACTAAA	-39	NA	73089821	73082538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73082589_73083880_73083960_73085952_73086112_73087463_73087544_73087924_73088079_73089743
ES_00010340	chr11	-	5790	11	FSM	ENSMUSG00000020745.16	ENSMUST00000102520.9	5789	11	0	-1	0	0	multi-exon	FALSE	canonical	3	8	junction_10	313.620790127185	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGTGGGGTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	74614684	74564774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614025
ES_00010342	chr11	-	408	1	FSM	ENSMUSG00000082481.2	ENSMUST00000119773.2	400	1	0	-8	0	8	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGAGAAAAAAAAAAAACCT	NA	False	NA	NA	False	AATAAA	-8	NA	74962039	74961631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74961600_74962000
ES_00010343	chr11	-	2206	9	FSM	ENSMUSG00000020847.16	ENSMUST00000121287.8	2199	9	0	-7	0	7	multi-exon	FALSE	canonical	1	2	junction_8	5.97390157267426	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAAGAGTCGTTTCTTCTG	NA	False	NA	-3	True	AATAAA	-31	NA	75828564	75721817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775_75801886_75828488
ES_00010344	chr11	-	1644	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111707	-760	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	33.6961210145704	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1435	False	NA	-5	True	NA	NA	NA	76178187	76148783	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178098
ES_00010345	chr11	-	6562	24	NNC	ENSMUSG00000017631.20	novel	6271	23	NA	NA	-253	70728	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.4777918956106	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGAACAGGACCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	76514637	76236831	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76236870_76307559_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002
ES_00010351	chr11	-	4317	10	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	70944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.4511759379824	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGGAAAGAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	76654405	76546483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76546512_76617427_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ES_00010352	chr11	-	4318	10	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	70944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.4511759379824	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGGAAAGAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	76654405	76546483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76546511_76617425_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ES_00010355	chr11	-	349	3	FSM	ENSMUSG00000050132.14	ENSMUST00000170674.2	689	3	17	323	17	-323	multi-exon	FALSE	canonical	3	6	junction_2	29.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTGCTGGCCCGGGCCT	8597	False	NA	NA	False	NA	NA	NA	78378104	78373982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78374173_78374259_78374363_78378048
ES_00010358	chr11	-	217	1	Intergenic	novelGene_636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTCTGGCTTTAACTA	NA	False	NA	NA	False	NA	NA	NA	78465299	78465082	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_78465100_78465300
ES_00010359	chr11	-	206	2	Intergenic	novelGene_639	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGGTAGATAGAGACAGA	NA	False	NA	NA	False	NA	NA	NA	78635848	78607648	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_78607679_78635672
ES_00010360	chr11	-	2049	5	NNC	ENSMUSG00000017677.12	novel	1002	5	NA	NA	0	13036	intron_retention	FALSE	non_canonical	0	0	junction_1	210.407937112648	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACTTACATATAATAAAT	6314	False	NA	NA	False	NA	NA	NA	79133775	79117161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79117308_79130573_79131289_79131513_79131622_79132420_79132535_79132809
ES_00010361	chr11	-	2345	4	FSM	ENSMUSG00000017677.12	ENSMUST00000150416.8	2338	4	0	-7	0	7	multi-exon	FALSE	canonical	3	470	junction_2	11.8977121983832	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCGATATTTCTTTCATG	6239	False	NA	-17	True	ATTAAA	-19	NA	79133850	79130206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809
ES_00010362	chr11	-	3398	7	NIC	ENSMUSG00000017677.12	novel	1260	8	NA	NA	0	7	intron_retention	FALSE	canonical	3	190	junction_4	105.38408587427	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCGATATTTCTTTCATG	6987	False	NA	-17	True	ATTAAA	-19	NA	79139485	79130206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216
ES_00010367	chr11	-	210	2	Antisense	novelGene_ENSMUSG00000017548.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	91	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACCTACAACACACTCTG	NA	False	NA	NA	False	NA	NA	NA	79920416	79907585	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_79907743_79920363
ES_00010368	chr11	-	2339	8	NIC	ENSMUSG00000017561.17	novel	2396	8	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	246.701505169833	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTTGTGGTTTTTTGTG	4542	False	NA	-2	True	AATAAA	-21	NA	79971763	79937317	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971613
ES_00010369	chr11	-	209	3	NNC	ENSMUSG00000017561.17	novel	1871	2	NA	NA	-70044	31	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	5153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGTGTTTCTTGGGGTT	NA	False	NA	NA	False	NA	NA	NA	80041861	79953478	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_79953511_80021488_80021614_80041809
ES_00010370	chr11	-	1493	10	FSM	ENSMUSG00000035441.15	ENSMUST00000125944.2	2454	10	14	947	14	-947	multi-exon	FALSE	canonical	2	2	junction_4	2.81968389787767	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCCGTCCTGGGGAG	NA	False	NA	NA	False	NA	NA	NA	80670815	80565439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_80565555_80565642_80565789_80566876_80567081_80567647_80567765_80570845_80570942_80573207_80573262_80575150_80575317_80576675_80576770_80583706_80583916_80670523
ES_00010371	chr11	-	1727	8	NNC	ENSMUSG00000020696.19	novel	3633	8	NA	NA	20	31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	62.7505589860459	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTTGCCTAAAACCCAT	2763	False	NA	23	True	NA	NA	NA	82762016	82696401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709298_82736577_82736722_82761833
ES_00010372	chr11	-	1889	8	NIC	ENSMUSG00000020696.19	novel	3575	8	NA	NA	7	-7	combination_of_known_splicesites	FALSE	canonical	2	2	junction_6	65.6906789896592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTTTCTGTGTGTTA	2750	False	NA	-15	True	TTTAAA	-11	NA	82762029	82696439	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82724906_82725106_82761833
ES_00010373	chr11	-	750	6	FSM	ENSMUSG00000020692.15	ENSMUST00000167196.2	738	6	0	-12	0	0	multi-exon	FALSE	canonical	3	35	junction_4	87.1793553543498	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	9310	False	NA	-6	True	AATAAA	-22	NA	82795115	82791593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065
ES_00010374	chr11	-	2176	12	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-22	-2	intron_retention	TRUE	canonical	3	35	junction_3	69.7512700201329	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGCAGCTTCTTGTTC	8350	False	NA	-8	True	AATAAA	-20	NA	82799190	82791595	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ES_00010376	chr11	-	501	2	NNC	ENSMUSG00000069793.13	novel	5769	5	NA	NA	-7598	-5	at_least_one_novel_splicesite	TRUE	non_canonical	3	75	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATTTTTGAATTTGTCT	329	False	NA	-11	True	NA	NA	NA	82890254	82869220	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_82869575_82890107
ES_00010377	chr11	-	2736	4	FSM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	0	-7	0	7	multi-exon	FALSE	canonical	3	9	junction_3	22.7596133534821	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGTTAATTAAAAACACT	2391	False	NA	NA	False	AATAAA	-21	NA	83189803	83185460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189665
ES_00010378	chr11	-	2501	5	NNC	ENSMUSG00000018405.8	novel	2477	5	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	48.6749422187639	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710369	84703886	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84705338_84705514_84705631_84705733_84705867_84709425_84709520_84709662
ES_00010379	chr11	-	1509	6	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-45	135	intron_retention	FALSE	canonical	3	14	junction_5	16.9186287860453	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAGAAGTATCTTTCAG	NA	False	NA	NA	False	ATTAAA	-24	NA	84719865	84711546	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716348_84719576
ES_00010380	chr11	-	3038	2	FSM	ENSMUSG00000020530.15	ENSMUST00000132098.2	552	2	0	-2486	0	711	multi-exon	FALSE	canonical	3	485	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTTTTTGTTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	84727294	84722475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84725410_84727190
ES_00010381	chr11	-	4532	14	NIC	ENSMUSG00000020530.15	novel	2478	15	NA	NA	-798	711	combination_of_known_junctions	FALSE	canonical	3	41	junction_13	144.390291269939	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTTTTTGTTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	84762441	84722475	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
ES_00010382	chr11	-	3661	14	FSM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	0	-711	0	711	multi-exon	FALSE	canonical	3	41	junction_13	140.403560365518	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTTTTTGTTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	84761564	84722475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
ES_00010383	chr11	-	2959	14	NNC	ENSMUSG00000020530.15	novel	3034	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_13	141.589121368631	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761615	84723186	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761499
ES_00010384	chr11	-	963	6	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	0	2786	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	259.977999069152	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTCCTGAGTTAAATATC	NA	False	NA	-34	True	AATAAA	-11	NA	84761605	84748758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
ES_00010385	chr11	-	2675	2	FSM	ENSMUSG00000045140.9	ENSMUST00000067058.3	2675	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATTTTGTCTGCATGTA	NA	False	NA	6	True	TTTAAA	-15	NA	84771021	84767140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84769339_84770544
ES_00010388	chr11	-	5687	26	NNC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	57.1316514727169	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGCTTTTATGTTTTAT	NA	False	NA	NA	False	TATAAA	-22	NA	86148397	86101506	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147262_86147324_86148330
ES_00010389	chr11	-	3999	26	NNC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	-10	-539	intron_retention	FALSE	canonical	0	0	junction_24	53.3554120966187	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAAGTGCAGCCACTTG	NA	False	NA	NA	False	AATAAA	-28	NA	86148354	86103452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147262_86147324_86148029
ES_00010390	chr11	-	1592	9	NIC	ENSMUSG00000018068.14	novel	3414	12	NA	NA	-2	6798	combination_of_known_splicesites	FALSE	canonical	2	4	junction_8	59.5838432379114	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGATCTAATGTGGT	NA	False	NA	NA	False	ATTAAA	-19	NA	86148378	86135078	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029_86148242_86148343
ES_00010392	chr11	-	2340	15	NNC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	60.8554661070149	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	-4	True	AATAAA	-21	NA	86435584	86392858	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_86393807_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ES_00010393	chr11	-	2440	16	NIC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_15	86.0969995605732	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	-4	True	AATAAA	-21	NA	86435587	86392858	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86434756_86434872_86435391
ES_00010394	chr11	-	2764	15	FSM	ENSMUSG00000020516.16	ENSMUST00000020824.15	2771	15	7	0	7	0	multi-exon	FALSE	canonical	2	2	junction_9	88.8732472774156	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	-4	True	AATAAA	-21	NA	86435624	86392858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86407569_86407814_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ES_00010395	chr11	-	469	6	FSM	ENSMUSG00000020516.16	ENSMUST00000131194.2	469	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	123.391409749626	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGACTATGCAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	86410865	86404443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86404464_86406916_86407018_86407976_86408076_86408175_86408219_86408408_86408467_86410717
ES_00010396	chr11	-	392	3	FSM	ENSMUSG00000018171.10	ENSMUST00000139040.2	420	3	0	28	0	-28	multi-exon	FALSE	canonical	3	717	junction_1	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCCATCTGTTTCACC	9887	False	NA	NA	False	TATAAA	-41	NA	86574647	86555407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86555616_86556602_86556705_86574565
ES_00010397	chr11	-	6429	33	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-189	11146	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	212.364285706778	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGGCTCTCCGCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	86648580	86574030	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_86574057_86585481_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
ES_00010398	chr11	-	2802	11	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	-48659	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	57.394773281197	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87344439	87269416	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129_87295273_87343341_87343868_87344084
ES_00010399	chr11	-	2594	12	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	-48659	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	64.8127627468235	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87344439	87269416	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129_87295272_87343341_87343484_87343690_87343868_87344084
ES_00010400	chr11	-	3783	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	0	61964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.421985581654	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGATTCCAGGGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	88755412	88659653	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_88659679_88721617_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ES_00010401	chr11	-	983	3	FSM	ENSMUSG00000057534.14	ENSMUST00000121228.2	704	3	-51	-228	-51	228	multi-exon	FALSE	canonical	2	7	junction_2	27	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTACCACCTGGAG	6754	False	NA	NA	False	NA	NA	NA	88857808	88855255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_88856100_88857540_88857603_88857731
ES_00010402	chr11	-	235	1	FSM	ENSMUSG00000048616.5	ENSMUST00000061728.5	1695	1	1375	85	1375	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGCTATTTATTCTTTA	NA	False	NA	NA	False	AATATA	-39	NA	89191783	89191548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_89191500_89191800
ES_00010404	chr11	-	656	1	FSM	ENSMUSG00000081043.2	ENSMUST00000119669.2	663	1	9	-2	9	2	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATTTAATATACTTTAT	NA	False	NA	NA	False	AGTAAA	-4	NA	90429963	90429307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_90429300_90430000
ES_00010407	chr11	-	533	2	Genic_Genomic	ENSMUSG00000081604.6	novel	411	1	NA	NA	-52	82481	multi-exon	FALSE	non_canonical	0	0	junction_1	0	195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACCCTTGCCTATACCT	NA	False	NA	NA	False	NA	NA	NA	93928506	93845562	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_93845595_93928005
ES_00010410	chr11	-	1176	6	FSM	ENSMUSG00000020863.16	ENSMUST00000132623.9	1176	6	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	126.523673674139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94187893	94181886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94182405_94183232_94183299_94183752_94183859_94183963_94184105_94186745_94186907_94187709
ES_00010411	chr11	-	1303	4	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40772	-54	-1018	54	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCACGAAGAACCAGGGCA	NA	False	NA	50	True	NA	NA	NA	94243030	94234066	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
ES_00010412	chr11	-	4847	27	NNC	ENSMUSG00000001507.17	novel	4861	26	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	14.1509194298483	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTGTCTGCTCCTACC	8789	False	NA	-1	True	AATAAA	-21	NA	94967623	94935300	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956_94967498_94967593
ES_00010415	chr11	-	3746	8	FSM	ENSMUSG00000018381.16	ENSMUST00000059026.10	4006	8	260	0	-51	0	multi-exon	FALSE	canonical	1	2	junction_7	1.51185789203691	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCAAGGCCGGGTGGGCA	NA	False	NA	NA	False	AATAAA	-35	NA	95732975	95720899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95723703_95724034_95724161_95724465_95724627_95724828_95724925_95725131_95725218_95726603_95726781_95727895_95728064_95732846
ES_00010416	chr11	-	8397	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	99943	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.294467597297	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAAATAGCCTCAGACT	NA	False	NA	NA	False	NA	NA	NA	95896766	95748045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95748072_95847992_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00010418	chr11	-	8416	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	28858	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.865819431275	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATGCATTAGAAG	NA	False	NA	NA	False	NA	NA	NA	95896766	95819130	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95819166_95847985_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00010419	chr11	-	8623	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-210	28858	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.294467597297	113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATGCATTAGAAG	NA	False	NA	NA	False	NA	NA	NA	95896976	95819130	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95819166_95847985_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00010421	chr11	-	219	2	Antisense	novelGene_ENSMUSG00000038756.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACAGCCACAGTGAGGG	NA	False	NA	NA	False	NA	NA	NA	96031991	96029735	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_96029761_96031797
ES_00010426	chr11	-	3527	4	FSM	ENSMUSG00000038615.18	ENSMUST00000169828.8	3530	4	3	0	3	0	multi-exon	FALSE	canonical	3	60	junction_3	612.843826399153	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96714950	96708239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
ES_00010432	chr11	-	202	1	ISM	ENSMUSG00000085307.2	ENSMUST00000134436.2	2804	2	270	3081	270	-3081	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAGAAGTTTATGATCTG	9693	False	NA	NA	False	NA	NA	NA	96813049	96812847	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_96812800_96813000
ES_00010433	chr11	-	1064	8	FSM	ENSMUSG00000020878.7	ENSMUST00000021251.7	1336	8	273	-1	273	1	multi-exon	FALSE	canonical	0	0	junction_2	1.24539969815448	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATGCTTTTCATGTTAC	4421	False	NA	NA	False	AATAAA	-14	NA	96931960	96925426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_96925851_96926284_96926431_96926697_96926768_96926921_96927032_96927295_96927343_96929597_96929707_96931692_96931799_96931908
ES_00010438	chr11	-	2341	2	Genic_Genomic	ENSMUSG00000043439.6	novel	2314	1	NA	NA	0	34202	multi-exon	TRUE	canonical	0	0	junction_1	0	337	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGGACAAGGTCACTTG	4941	False	NA	NA	False	NA	NA	NA	97520528	97484012	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_97484038_97518212
ES_00010439	chr11	-	2332	3	FSM	ENSMUSG00000018541.11	ENSMUST00000124356.2	2450	3	121	-3	121	3	multi-exon	FALSE	canonical	3	107	junction_2	1	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTTGGAGCAAGAATGAAA	NA	False	NA	2	True	AATAAA	-23	NA	97641875	97636303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97638296_97638786_97638949_97641697
ES_00010440	chr11	-	382	2	Intergenic	novelGene_723	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	134	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAATCTTTAAAAA	9829	False	NA	NA	False	NA	NA	NA	97772039	97736053	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_97736166_97771769
ES_00010441	chr11	-	823	2	FSM	ENSMUSG00000070336.4	ENSMUST00000125403.2	863	2	40	0	40	0	multi-exon	FALSE	canonical	2	4	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATATATATGTATATTTA	NA	False	NA	NA	False	NA	NA	NA	97746338	97744651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97745315_97746178
ES_00010442	chr11	-	2439	14	FSM	ENSMUSG00000017417.15	ENSMUST00000107565.3	2439	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	10.3877488150122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGTGTGGTGGTGCTCA	6905	False	NA	NA	False	ATTAAA	-13	NA	97877225	97814481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847414_97869328_97869508_97877063
ES_00010443	chr11	-	1556	6	FSM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	15	0	15	0	multi-exon	FALSE	canonical	1	2	junction_2	2.57681974534503	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	3	True	ATTAAA	-26	NA	97886992	97880403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163_97885312_97885892_97885954_97886643
ES_00010444	chr11	-	3901	13	NIC	ENSMUSG00000020882.18	novel	3396	14	NA	NA	1	3	intron_retention	FALSE	canonical	2	14	junction_1	28.631155330436	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTCTTTGTTGTCACC	NA	False	NA	3	True	TATAAA	-36	NA	97913459	97892330	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ES_00010446	chr11	-	2974	12	FSM	ENSMUSG00000020883.19	ENSMUST00000135969.8	4028	12	0	1054	0	-1054	multi-exon	FALSE	canonical	3	142	junction_6	7.27954226151549	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTTGACTTCTACTGT	3171	False	NA	NA	False	NA	NA	NA	98040432	97982970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97983028_97983938_97983984_97985958_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040141
ES_00010449	chr11	-	3379	26	NIC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_24	45.3078359668612	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620232	98595416	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619603_98619814_98620206
ES_00010450	chr11	-	758	3	FSM	ENSMUSG00000017210.15	ENSMUST00000156378.2	760	3	2	0	2	0	multi-exon	FALSE	canonical	3	152	junction_2	23	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGAGACCTTCCCACCC	NA	False	NA	NA	False	NA	NA	NA	98597304	98595668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98595843_98595944_98596429_98597204
ES_00010452	chr11	-	1380	4	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	8	intron_retention	FALSE	canonical	3	1094	junction_3	309.401932048841	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTTTAACCCATCTGA	NA	False	NA	8	True	AATAAA	-30	NA	98886550	98883760	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98884762_98885032_98885233_98886069_98886205_98886506
ES_00010454	chr11	-	229	2	FSM	ENSMUSG00000017607.10	ENSMUST00000123303.2	763	2	0	534	0	-534	multi-exon	FALSE	canonical	2	3	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTCCCAGCCCTGTGTC	2882	False	NA	NA	False	NA	NA	NA	98980111	98976830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_98977013_98980064
ES_00010457	chr11	-	1286	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1835	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	29.6858552175948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCATTTGTCCTGTCAT	NA	False	NA	-3	True	AATAAA	-26	NA	100162532	100153704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100162468
ES_00010459	chr11	-	1436	9	FSM	ENSMUSG00000017176.18	ENSMUST00000107399.9	1427	9	0	-9	0	9	multi-exon	FALSE	canonical	1	4	junction_1	186.778612265966	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTGTGTCCTTAACTA	NA	False	NA	NA	False	AATACA	-24	NA	100331915	100313137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100313772_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ES_00010468	chr11	-	3122	8	FSM	ENSMUSG00000017802.15	ENSMUST00000107295.10	3179	8	-17	74	-17	-74	multi-exon	FALSE	canonical	3	12	junction_5	32.1222155944119	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTTTCCCTCTTGA	9828	False	NA	NA	False	NA	NA	NA	101010686	100987221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100994715_100994747_100997132_100997240_101010366
ES_00010472	chr11	-	767	3	NNC	ENSMUSG00000017188.4	novel	886	2	NA	NA	-17	22718	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	935	2445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACCAAACCAAACCAAACA	5656	False	NA	NA	False	NA	NA	NA	101169786	101146075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_101146111_101168793_101169279_101169539
ES_00010473	chr11	-	766	3	NNC	ENSMUSG00000017188.4	novel	886	2	NA	NA	-17	22718	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	935	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACCAAACCAAACCAAACA	5656	False	NA	NA	False	NA	NA	NA	101169786	101146075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_101146110_101168793_101169279_101169539
ES_00010474	chr11	-	214	2	Antisense	novelGene_ENSMUSG00000118571.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1848	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGAGAGGGAATGATTT	NA	False	NA	NA	False	NA	NA	NA	101264709	101231250	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_101231411_101264655
ES_00010475	chr11	-	224	1	Intergenic	novelGene_738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATAAAATTGAGGT	NA	False	NA	NA	False	NA	NA	NA	101247614	101247390	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_101247400_101247600
ES_00010476	chr11	-	711	5	ISM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	606	-6	169	6	3prime_fragment	FALSE	canonical	2	8	junction_2	1.4790199457749	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTTCCTGTATTCTCC	NA	False	NA	-4	True	AATAAA	-20	NA	101314889	101309631	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802
ES_00010477	chr11	-	384	3	FSM	ENSMUSG00000017146.13	ENSMUST00000131460.2	539	3	0	155	0	-155	multi-exon	FALSE	canonical	3	272	junction_1	57.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAACTTTCCTCCTATCC	4136	False	NA	NA	False	NA	NA	NA	101413285	101403491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101403676_101408096_101408269_101413257
ES_00010479	chr11	-	2332	13	FSM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	70	-7	9	2	multi-exon	TRUE	canonical	2	8	junction_11	4.74926894959167	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTCTTTGCTTCCATGA	NA	False	NA	1	True	AATAAA	-26	NA	101676127	101660565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ES_00010480	chr11	-	2125	11	ISM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	932	11	-51	-11	3prime_fragment	FALSE	canonical	2	11	junction_8	4.15210789840534	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGGTTGTTTCTATT	215	False	NA	-17	True	AATAAA	-8	NA	101675265	101660583	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055
ES_00010481	chr11	-	391	2	FSM	ENSMUSG00000003518.14	ENSMUST00000143177.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGGTCTGACTGGGAG	NA	False	NA	NA	False	NA	NA	NA	101875604	101865541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101865766_101875437
ES_00010482	chr11	-	4089	13	FSM	ENSMUSG00000017314.13	ENSMUST00000017458.11	4089	13	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	3.83242742918897	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTCTGTTTGTCATTG	7667	False	NA	NA	False	ATTAAA	-17	NA	101979341	101947840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101976125_101976189_101979245
ES_00010483	chr11	-	1579	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4524	False	NA	0	True	AATAAA	-16	NA	102047171	102043371	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
ES_00010484	chr11	-	927	6	FSM	ENSMUSG00000008855.18	ENSMUST00000150965.8	1008	6	83	-2	83	0	multi-exon	FALSE	canonical	3	219	junction_3	15.7480157480236	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	9365	False	NA	-3	True	ATTAAA	-22	NA	102088611	102086572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491
ES_00010485	chr11	-	3874	28	FSM	ENSMUSG00000008855.18	ENSMUST00000124077.8	3872	28	0	-2	0	0	multi-exon	FALSE	canonical	1	1	junction_25	66.6396241448948	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102120965	102086572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102104750_102104863_102109241_102109314_102115559_102115782_102120830
ES_00010486	chr11	-	3749	27	NNC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	1	29	junction_23	58.2045973092246	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCAACAACGTGTGCCGT	NA	False	NA	-10	True	ATTAAA	-15	NA	102120959	102086579	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097598_102097732_102097993_102109241_102109317_102115559_102115782_102120830
ES_00010489	chr11	-	3213	20	FSM	ENSMUSG00000020923.18	ENSMUST00000006754.14	3213	20	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	260.634926855464	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9007	False	NA	60	True	NA	NA	NA	102209922	102196749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102197593_102197681_102197826_102197908_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
ES_00010490	chr11	-	3726	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	-129	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_20	179.182274513971	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	8878	False	NA	60	True	NA	NA	NA	102210051	102196749	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209404
ES_00010491	chr11	-	728	4	FSM	ENSMUSG00000018677.10	ENSMUST00000128825.2	728	4	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	2200.85321838802	3896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGTGCCTCCAATAC	1670	False	NA	NA	False	NA	NA	NA	102295319	102293867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102294362_102294616_102294699_102294856_102294967_102295277
ES_00010492	chr11	-	1500	12	NNC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1380.16899192852	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCTGTAGTGTCTTG	7726	False	NA	98	True	NA	NA	NA	102298332	102293967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295915_102296517_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ES_00010493	chr11	-	1486	12	NNC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1380.16899192852	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7726	False	NA	95	True	NA	NA	NA	102298332	102293970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295907_102296520_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ES_00010498	chr11	-	6924	10	NNC	ENSMUSG00000034621.15	novel	6871	8	NA	NA	-5	26872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.7331573083926	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTACATAAGCACAGAACTG	632	False	NA	NA	False	NA	NA	NA	102447030	102339868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102339897_102366738_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102422138_102422157_102429107_102429183_102446905
ES_00010501	chr11	-	2283	6	NNC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	0	48972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.095094364929	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCAAAGCCATCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	102588496	102526539	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102526570_102575512_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
ES_00010502	chr11	-	2124	4	NNC	ENSMUSG00000034520.15	novel	2314	3	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	300.941854849072	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102709994	102690404	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102692022_102693666_102693743_102695106_102695339_102709795
ES_00010505	chr11	-	418	3	ISM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	8813	-1	8787	1	3prime_fragment	FALSE	canonical	2	5	junction_2	8.5	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGCGCCTAGTGGGAT	NA	False	NA	NA	False	AGTAAA	-18	NA	103090561	103089768	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_103089945_103090143_103090297_103090472
ES_00010506	chr11	-	4188	16	FSM	ENSMUSG00000020941.8	ENSMUST00000021324.3	4246	16	58	0	58	0	multi-exon	FALSE	canonical	1	2	junction_13	1.87853370714738	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTTTGTAGGCTGTGA	NA	False	NA	NA	False	AATAAA	-15	NA	103158240	103110587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103112016_103112324_103112426_103115071_103115217_103115859_103115967_103116115_103116449_103117812_103117964_103118357_103118522_103121157_103121263_103121857_103121990_103122182_103122313_103128323_103128462_103129757_103130379_103130457_103130669_103131862_103131933_103132940_103133216_103158163
ES_00010507	chr11	-	3992	16	ISM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	2507	-16	2507	16	3prime_fragment	FALSE	canonical	2	3	junction_6	4.91075916285411	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTAGTAGCCTGGAAGAC	NA	False	NA	16	True	NA	NA	NA	103251726	103222306	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072
ES_00010509	chr11	-	3147	7	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	0	11858	0	-9516	5prime_fragment	FALSE	canonical	3	46	junction_1	16.3647656737136	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTATTGGACAACATAC	NA	False	NA	NA	False	NA	NA	NA	103303513	103266958	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
ES_00010512	chr11	-	5043	16	NIC	ENSMUSG00000018412.17	novel	5061	15	NA	NA	208	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_15	66.7590692964883	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCAGGCTTTTCTTGA	7767	False	NA	-1	True	NA	NA	NA	104359479	104224325	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104359411
ES_00010514	chr11	-	5755	19	NNC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	-9	224	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_12	67.2413196013314	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGTAATTTTTAGAATAT	2057	False	NA	NA	False	AATAAA	-20	NA	104441455	104393346	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417882_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
ES_00010515	chr11	-	5425	19	NIC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_18	50.2831488843767	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATAATCAAGGTGTTAA	2088	False	NA	-32	True	AATAAA	-16	NA	104441424	104393570	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
ES_00010518	chr11	-	398	1	FSM	ENSMUSG00000081965.2	ENSMUST00000118770.2	1845	1	1391	56	1391	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCTGCCGGTTCGCCAAC	NA	False	NA	NA	False	NA	NA	NA	105056055	105055657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_105055700_105056100
ES_00010520	chr11	-	3386	2	FSM	ENSMUSG00000069631.15	ENSMUST00000106867.2	3386	2	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAAAATCTATCA	NA	False	NA	NA	False	AATAGA	-4	NA	106084398	106074727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106078007_106084291
ES_00010522	chr11	-	3306	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9057	76339	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	580.121212414914	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAACAAAAAAAAAAA	367	False	NA	NA	False	NA	NA	NA	106615277	106468703	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106468729_106545045_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615168
ES_00010523	chr11	-	3437	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9057	178	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_4	494.225031966434	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTTCAGGTCCTAATGA	367	False	NA	NA	False	NA	NA	NA	106615277	106544864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ES_00010524	chr11	-	3114	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9007	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_13	519.016742213799	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	417	False	NA	-9	True	AATAAA	-19	NA	106615227	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615208
ES_00010525	chr11	-	3258	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9017	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_16	459.066133409719	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	407	False	NA	-9	True	AATAAA	-19	NA	106615237	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615208
ES_00010526	chr11	-	3138	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9019	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	493.407245649242	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	405	False	NA	-9	True	AATAAA	-19	NA	106615239	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ES_00010527	chr11	-	3181	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9020	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_14	426.345511173695	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	404	False	NA	-9	True	AATAAA	-19	NA	106615240	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615208
ES_00010528	chr11	-	3133	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9023	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	473.607244966974	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	401	False	NA	-9	True	AATAAA	-19	NA	106615243	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ES_00010529	chr11	-	3258	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9057	-2	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTATCTGCATTCAAGT	367	False	NA	-12	True	AATAAA	-16	NA	106615277	106545045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ES_00010530	chr11	-	3298	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9056	-1	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_16	418.197765529361	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTATCTGCATTCAAGTG	368	False	NA	-11	True	AATAAA	-17	NA	106615276	106545044	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ES_00010531	chr11	-	3316	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9063	-2	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_16	418.075950037789	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTATCTGCATTCAAGT	361	False	NA	-12	True	AATAAA	-16	NA	106615283	106545045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ES_00010532	chr11	-	3183	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9063	-1	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	473.471167808096	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTATCTGCATTCAAGTG	361	False	NA	-11	True	AATAAA	-17	NA	106615283	106545044	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ES_00010533	chr11	-	3250	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9051	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	479.929050311953	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	373	False	NA	-9	True	AATAAA	-19	NA	106615271	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ES_00010534	chr11	-	1770	8	FSM	ENSMUSG00000020718.13	ENSMUST00000127061.8	1770	8	3	-3	3	3	multi-exon	FALSE	canonical	3	15	junction_7	17.739613230029	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGACTTTTGTATTT	4300	False	NA	NA	False	AATAAA	-36	NA	106670360	106659075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669542
ES_00010536	chr11	-	2463	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8963	False	NA	-9	True	AATAAA	-45	NA	106680011	106672373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
ES_00010538	chr11	-	1956	11	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_10	946.562882221778	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9743	False	NA	NA	False	AATAAA	-27	NA	106890290	106879454	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888141_106890184
ES_00010540	chr11	-	11488	28	FSM	ENSMUSG00000040481.18	ENSMUST00000057892.15	11488	28	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_24	20.9549781940023	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGGTCAGATC	NA	False	NA	-6	True	AATAAA	-22	NA	107022748	106923906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106986541_106986752_106990391_106990616_107001638_107002462_107022099
ES_00010541	chr11	-	10332	30	NNC	ENSMUSG00000040481.18	novel	12036	30	NA	NA	383	-735	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_26	20.7114827388427	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGATTCTGTGCAG	NA	False	NA	NA	False	AATAAA	-11	NA	107022365	106924643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106985827_106986017_106986541_106986752_106990391_106990616_107001638_107002462_107022099
ES_00010543	chr11	-	4828	2	NNC	ENSMUSG00000040430.19	novel	5478	8	NA	NA	122226	-2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCGAGTGTAGCATCCT	NA	False	NA	-3	True	AATAAA	-15	NA	107106126	107098719	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_107103485_107106063
ES_00010545	chr11	-	442	1	FSM	ENSMUSG00000083996.2	ENSMUST00000118214.2	375	1	141	-208	141	208	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAGCCAGAAAAAAAAG	5086	False	NA	NA	False	ATTAAA	-24	NA	107422990	107422548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107422500_107423000
ES_00010546	chr11	-	202	1	Intergenic	novelGene_775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTACATGAGATAGGCAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	107470844	107470642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_107470600_107470800
ES_00010547	chr11	-	251	2	Antisense	novelGene_ENSMUSG00000020721.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	436	junction_1	0	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107473320	107472603	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_107472732_107473197
ES_00010548	chr11	-	3675	6	FSM	ENSMUSG00000040373.13	ENSMUST00000039071.3	3705	6	22	8	22	-8	multi-exon	FALSE	canonical	2	4	junction_5	1.72046505340853	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTATTCATTGTCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	107805859	107765504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_107768436_107768720_107768867_107772422_107772564_107773714_107773802_107775171_107775408_107805725
ES_00010550	chr11	-	548	3	FSM	ENSMUSG00000041920.15	ENSMUST00000168740.3	548	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGCCTCTCCTCCGCT	3480	False	NA	NA	False	NA	NA	NA	109363514	109350624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_109350769_109354135_109354375_109363349
ES_00010551	chr11	-	1233	8	FSM	ENSMUSG00000041895.16	ENSMUST00000106689.2	1220	8	0	-13	0	13	multi-exon	FALSE	canonical	3	112	junction_2	3.73619909446343	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGGGACTCGGTAAGTT	NA	False	NA	NA	False	ATTAAA	-33	NA	109502258	109472884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ES_00010552	chr11	-	2516	9	FSM	ENSMUSG00000018800.15	ENSMUST00000127318.8	3580	9	0	1064	0	-1064	multi-exon	FALSE	canonical	2	7	junction_8	5.04820512657717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTTTAACTTTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	110228471	110200962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_110201132_110202136_110202285_110204154_110204344_110205349_110205492_110208527_110208758_110210619_110210709_110217385_110218763_110219962_110220083_110228419
ES_00010553	chr11	-	1787	2	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	-14	-41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCTGCATTGTATAAAT	NA	False	NA	NA	False	NA	NA	NA	113092678	112934761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_112935987_113092116
ES_00010554	chr11	-	2688	12	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	0	56798	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	187.731961200533	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCAAGTTATCTTTG	7769	False	NA	NA	False	NA	NA	NA	113456582	113078880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113078914_113135679_113136692_113136717_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ES_00010556	chr11	-	2836	12	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-26228	56798	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.891360797261	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCAAGTTATCTTTG	NA	False	NA	NA	False	NA	NA	NA	113482833	113078880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113078914_113135679_113136692_113136717_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113482607
ES_00010557	chr11	-	3253	11	FSM	ENSMUSG00000041654.16	ENSMUST00000042657.16	2781	11	0	-472	0	472	multi-exon	FALSE	canonical	0	0	junction_6	190.932474974793	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCACTGTATCATTCAG	7757	False	NA	NA	False	NA	NA	NA	113456594	113135206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113413726_113413832_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ES_00010558	chr11	-	1167	7	NIC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	5	2	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	66.4646940529749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTGATTCCTTTTCTT	NA	False	NA	-7	True	AATATA	-18	NA	113600341	113588995	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ES_00010560	chr11	-	1464	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-127	2	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	74.0855361502275	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTGATTCCTTTTCTT	NA	False	NA	-7	True	AATATA	-18	NA	113600479	113588995	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ES_00010561	chr11	-	1118	7	NNC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	26	2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	83.4321081279064	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTGATTCCTTTTCTT	NA	False	NA	-7	True	AATATA	-18	NA	113600817	113588995	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600737
ES_00010562	chr11	-	1291	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	10	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	70.2723564542463	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	-8	True	AATATA	-17	NA	113600336	113588996	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ES_00010563	chr11	-	1623	10	NIC	ENSMUSG00000018861.9	novel	1948	12	NA	NA	540	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	35.6145344168416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167010	115158849	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904
ES_00010565	chr11	-	3264	19	FSM	ENSMUSG00000034586.15	ENSMUST00000044152.13	3236	19	-28	0	9	0	multi-exon	FALSE	canonical	2	4	junction_16	3.67045259092421	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTCTCTGTACAT	8669	False	NA	0	True	AATAAA	-15	NA	115258573	115238532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250635_115251147_115251319_115252464_115252615_115258369
ES_00010566	chr11	-	588	6	NNC	ENSMUSG00000034566.11	novel	486	5	NA	NA	0	909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1306.80765225797	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTAAACTCTATCTAACC	NA	False	NA	NA	False	NA	NA	NA	115309333	115305605	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115305658_115306523_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211
ES_00010569	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	1501.20529353361	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310743	115306514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
ES_00010570	chr11	-	1032	6	NNC	ENSMUSG00000020736.13	novel	858	5	NA	NA	0	25258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.3261621408725	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGTATCTAAACATTCTT	NA	False	NA	NA	False	NA	NA	NA	115382677	115355987	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115356178_115381250_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ES_00010571	chr11	-	623	5	NNC	ENSMUSG00000020736.13	novel	858	5	NA	NA	0	25056	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	87.5271386485357	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACCCACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115382197	115356189	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115356216_115381250_115381571_115381678_115381794_115381963_115382025_115382096
ES_00010572	chr11	-	478	2	Antisense	novelGene_ENSMUSG00000081376.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGGTGGTGGCGCAC	NA	False	NA	NA	False	NA	NA	NA	115400570	115356355	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_115356381_115400117
ES_00010574	chr11	-	344	2	Intergenic	novelGene_790	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	115431150	115430103	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_115430349_115431051
ES_00010577	chr11	-	2512	17	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	3	327	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	122.187611892532	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAGAACTGCATCTTTA	3559	False	NA	NA	False	NA	NA	NA	115494699	115476202	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482400_115482521_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ES_00010578	chr11	-	932	10	FSM	ENSMUSG00000020740.14	ENSMUST00000148782.8	932	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	137.605537499831	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGGCATTGGCCCCACCC	3544	False	NA	NA	False	NA	NA	NA	115494714	115479302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ES_00010579	chr11	-	1271	6	FSM	ENSMUSG00000020743.16	ENSMUST00000137304.8	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	137.166468205608	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503753	115498743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500416_115502728_115502861_115503610
ES_00010583	chr11	-	1664	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	0	3155	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5882.00448401733	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTGTTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	115915299	115909582	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115909615_115913116_115914362_115914450_115914605_115914707_115914846_115915204
ES_00010589	chr11	-	1348	10	NNC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	0	35912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.797939824541	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTTAAAAAAAAGAAAGA	500	False	NA	NA	False	NA	NA	NA	116029601	115986730	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115986765_116022646_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ES_00010590	chr11	-	1437	10	NNC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	0	35912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.797939824541	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTTAAAAAAAAGAAAGA	410	False	NA	NA	False	NA	NA	NA	116029691	115986730	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115986764_116022646_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ES_00010591	chr11	-	1280	3	ISM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	297	-640	2	0	3prime_fragment	FALSE	canonical	3	54	junction_2	53.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998564	115996577	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_115997468_115997757_115997833_115998249
ES_00010595	chr11	-	3992	14	FSM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	-249	0	-5	0	multi-exon	FALSE	canonical	2	9	junction_11	29.8427833148373	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089876	116062713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
ES_00010596	chr11	-	1862	9	ISM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	253	5756	9	2076	5prime_fragment	FALSE	canonical	3	53	junction_7	16.7663166795811	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTTTAATCTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	116089618	116068469	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ES_00010597	chr11	-	964	3	FSM	ENSMUSG00000020777.17	ENSMUST00000124684.2	841	3	-321	198	-5	-198	multi-exon	FALSE	canonical	3	20	junction_1	31	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTCAGTGTCACTCC	NA	False	NA	NA	False	CATAAA	-21	NA	116089876	116080052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116080402_116089047_116089208_116089421
ES_00010599	chr11	-	3060	7	FSM	ENSMUSG00000052949.15	ENSMUST00000150775.2	925	7	0	-2135	0	82	multi-exon	TRUE	canonical	2	4	junction_2	17.5063480549834	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTGACTGCCCTACCTG	8463	False	NA	NA	False	NA	NA	NA	116238744	116227096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116229657_116231163_116231205_116235020_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681
ES_00010601	chr11	-	1807	11	NNC	ENSMUSG00000015869.17	novel	1841	10	NA	NA	0	2278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	267.241183203488	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAAGATGGGGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	116381115	116359392	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_116359426_116361678_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ES_00010603	chr11	-	230	2	Antisense	novelGene_ENSMUSG00000075410.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGCCAACAACAATT	NA	False	NA	NA	False	NA	NA	NA	116557965	116501752	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_116501775_116557757
ES_00010605	chr11	-	1523	7	NIC	ENSMUSG00000056962.12	novel	2072	6	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	130.186298135488	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTGTGGACAGCTTTC	NA	False	NA	-10	True	AATAAA	-13	NA	116734082	116728260	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_116728590_116729815_116729955_116730663_116730753_116731273_116731372_116731894_116732182_116733157_116733547_116733890
ES_00010606	chr11	-	1718	7	NIC	ENSMUSG00000056962.12	novel	1668	6	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	131.640187210779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATACTGTGGACAGCT	NA	False	NA	-13	True	AATAAA	-10	NA	116734275	116728263	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_116728590_116729815_116729955_116730663_116730758_116731273_116731372_116731894_116732182_116733157_116733547_116733890
ES_00010607	chr11	-	243	2	Intergenic	novelGene_801	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	413	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCAGGCTGCTCACTTG	NA	False	NA	NA	False	NA	NA	NA	117475818	117473734	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_117473921_117475761
ES_00010611	chr11	-	2926	5	NNC	ENSMUSG00000025575.15	novel	2873	5	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_4	71.3740148793663	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCTTGTCTATGTTGGC	9064	False	NA	-1	True	AATAAA	-17	NA	118309806	118297114	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308606_118309755
ES_00010612	chr11	-	2997	5	FSM	ENSMUSG00000025575.15	ENSMUST00000092378.10	2995	5	0	-2	0	1	multi-exon	TRUE	canonical	3	9	junction_4	68.7786304021823	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTGTCTATGTTGGCT	9021	False	NA	0	True	AATAAA	-18	NA	118309849	118297113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308633_118309755
ES_00010614	chr11	-	5229	5	FSM	ENSMUSG00000039989.8	ENSMUST00000145058.2	1410	5	-60	-3759	-60	-41	multi-exon	FALSE	canonical	1	1	junction_2	30.8332207205151	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCATGTAAATGCTTATAA	NA	False	NA	NA	False	TATAAA	-15	NA	118977107	118968439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_118973128_118973342_118973410_118975357_118975455_118976582_118976627_118976774
ES_00010615	chr11	-	3772	4	ISM	ENSMUSG00000039976.5	ENSMUST00000036113.4	6986	12	74543	1395	68020	-1395	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCCTGTATTTGTGTTT	8653	False	NA	NA	False	NA	NA	NA	119044782	119035265	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_119038643_119039756_119039904_119041853_119042034_119044714
ES_00010617	chr11	-	3049	13	NNC	ENSMUSG00000025377.15	novel	2770	13	NA	NA	17	9	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_6	30.168968604622	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCTGGTTGATTTTGT	NA	False	NA	1	True	AATAAA	-25	NA	119989509	119981347	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985446_119986169_119986242_119986359_119986436_119986629_119986698_119987390_119987501_119987703_119987796_119988334_119988408_119989451
ES_00010618	chr11	-	4038	16	NIC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	189	junction_1	103.515409480908	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGTCGAGTTGGTTTACC	5022	False	NA	-7	True	AATAAA	-17	NA	120042146	119995272	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_119996860_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00010619	chr11	-	4053	16	NNC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_2	132.618986406757	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCGAGTCGAGTTGGTTT	5004	False	NA	-10	True	AATAAA	-14	NA	120042164	119995275	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_119996863_119997259_119997434_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00010620	chr11	-	1673	11	FSM	ENSMUSG00000061306.17	ENSMUST00000076697.13	1672	11	0	-1	0	1	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAATGCTGCCTTTCCTTG	4996	False	NA	NA	False	AATAAA	-18	NA	120042172	120009696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120009971_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00010621	chr11	-	1948	11	FSM	ENSMUSG00000061306.17	ENSMUST00000053692.9	1947	11	0	-1	0	1	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGGCTTTGTTTTTTT	4996	False	NA	NA	False	NA	NA	NA	120042172	120014668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120015218_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00010622	chr11	-	2319	1	Genic_Genomic	ENSMUSG00000043993.7	novel	NA	NA	NA	NA	-4	531	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGCAGGCCAGGCAGCAC	NA	False	NA	NA	False	NA	NA	NA	120122415	120120096	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_120120100_120122400
ES_00010623	chr11	-	3409	2	FSM	ENSMUSG00000039703.16	ENSMUST00000137041.2	516	2	-153	-2740	-153	792	multi-exon	FALSE	canonical	3	469	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGTTCACAGGACGTTT	NA	False	NA	NA	False	NA	NA	NA	120274482	120270403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120273453_120274122
ES_00010626	chr11	-	1212	6	NNC	ENSMUSG00000061111.9	novel	1205	5	NA	NA	0	30570	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	156.167346138685	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120440527	120403143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120403177_120433713_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
ES_00010627	chr11	-	1281	4	FSM	ENSMUSG00000061111.9	ENSMUST00000135515.2	1256	4	-23	-2	3	2	multi-exon	FALSE	canonical	3	334	junction_3	32.7244387100664	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCATGGCAGTCTGTCA	NA	False	NA	-22	True	AATAAA	-19	NA	120440550	120433711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120434575_120434729_120434832_120435506_120435755_120440482
ES_00010632	chr11	-	1824	11	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	0	0	intron_retention	FALSE	canonical	2	6	junction_2	26.3286915740224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515795	120509197	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_120509876_120509974_120510117_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ES_00010638	chr11	-	2350	11	NNC	ENSMUSG00000042988.11	novel	2012	12	NA	NA	0	-6	intron_retention	FALSE	canonical	2	13	junction_5	31.3521929057602	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATCCAGAAGCTCACC	9573	False	NA	NA	False	ATTAAA	-15	NA	120551655	120544619	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547499_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
ES_00010641	chr11	-	2123	15	NNC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	86315	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	279.56186566607	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAACAAACAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	120687203	120593711	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_120593739_120680026_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
ES_00010642	chr11	-	536	4	NIC	ENSMUSG00000025144.18	novel	606	5	NA	NA	8	-3	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGGCCTGCTTTCTCTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120604550	120601771	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
ES_00010643	chr11	-	910	7	FSM	ENSMUSG00000039450.12	ENSMUST00000125242.8	910	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	12.2202018532156	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTGTGCTGATTCTC	6915	False	NA	-30	True	AATAAA	-11	NA	120618070	120616250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
ES_00010644	chr11	-	1397	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	59	75107	59	-27844	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTTTCTGAGACA	1530	False	NA	NA	False	NA	NA	NA	120823639	120792461	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
ES_00010653	chr11	+	392	1	Intergenic	novelGene_446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAACAAAC	NA	False	NA	NA	False	AAGAAA	-25	NA	5444483	5444875	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_5444500_5444900
ES_00010654	chr11	+	250	1	Intergenic	novelGene_449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAGTTCCACTAGTGAGT	625	False	NA	NA	False	NA	NA	NA	5762776	5763026	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_5762800_5763000
ES_00010655	chr11	+	259	1	Intergenic	novelGene_453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGGCCTTTGTATAAACA	NA	False	NA	NA	False	NA	NA	NA	6318625	6318884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6318600_6318900
ES_00010656	chr11	+	228	1	Intergenic	novelGene_455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGCGATTTTGTAACTG	NA	False	NA	NA	False	NA	NA	NA	6439085	6439313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6439100_6439300
ES_00010657	chr11	+	487	1	Intergenic	novelGene_462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGGGTTTGGCACATA	NA	False	NA	NA	False	NA	NA	NA	8288057	8288544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8288100_8288500
ES_00010660	chr11	+	3234	1	Intergenic	novelGene_473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGAGCTACGGCCTAC	NA	False	NA	NA	False	NA	NA	NA	15119670	15122904	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_15119700_15122900
ES_00010661	chr11	+	224	1	Intergenic	novelGene_476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCTTACTTTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	17943812	17944036	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_17943800_17944000
ES_00010663	chr11	+	645	1	Intergenic	novelGene_497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2837	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGGGTGTCTTAAGACT	NA	False	NA	NA	False	NA	NA	NA	27265232	27265877	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_27265200_27265900
ES_00010664	chr11	+	218	1	Intergenic	novelGene_501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTCTCTCTACCTGTT	NA	False	NA	NA	False	NA	NA	NA	28091356	28091574	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_28091400_28091600
ES_00010667	chr11	+	204	1	Intergenic	novelGene_503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACTCACATGCCCAAGTG	2986	False	NA	NA	False	NA	NA	NA	29710731	29710935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_29710700_29710900
ES_00010669	chr11	+	275	1	Intergenic	novelGene_506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAACTTCTAATCATTC	NA	False	NA	NA	False	NA	NA	NA	31386055	31386330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_31386100_31386300
ES_00010670	chr11	+	220	1	Intergenic	novelGene_511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCATGGGTCTGTTTC	4498	False	NA	NA	False	NA	NA	NA	32567567	32567787	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_32567600_32567800
ES_00010671	chr11	+	1113	1	Intergenic	novelGene_512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAAATGGCTAGTGATG	NA	False	NA	NA	False	AGTAAA	-11	NA	32859258	32860371	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_32859300_32860400
ES_00010673	chr11	+	231	1	Intergenic	novelGene_527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCCACAAGTCTTAATATA	NA	False	NA	NA	False	NA	NA	NA	44490312	44490543	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_44490300_44490500
ES_00010675	chr11	+	278	1	Intergenic	novelGene_531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTGTTTG	NA	False	NA	NA	False	AATAAA	-28	NA	46356655	46356933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_46356700_46356900
ES_00010676	chr11	+	243	1	Intergenic	novelGene_533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	278	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTTTCAGTCTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	49341797	49342040	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_49341800_49342000
ES_00010678	chr11	+	235	1	Intergenic	novelGene_544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAACGGCAGGGCTTATA	NA	False	NA	NA	False	AATACA	-14	NA	53092203	53092438	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53092200_53092400
ES_00010679	chr11	+	246	1	Intergenic	novelGene_548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAATGAATCACTAACTT	NA	False	NA	NA	False	NA	NA	NA	53238557	53238803	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53238600_53238800
ES_00010681	chr11	+	202	1	Intergenic	novelGene_552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	568	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGAGATCAGCTTACCC	NA	False	NA	NA	False	NA	NA	NA	53646348	53646550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53646300_53646600
ES_00010683	chr11	+	387	1	Intergenic	novelGene_554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAGAAGCTACAGTTCA	NA	False	NA	NA	False	NA	NA	NA	54734773	54735160	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_54734800_54735200
ES_00010684	chr11	+	203	1	Intergenic	novelGene_563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACTATACTAGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	57767657	57767860	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_57767700_57767900
ES_00010685	chr11	+	211	1	Intergenic	novelGene_568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	59083504	59083715	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_59083500_59083700
ES_00010686	chr11	+	318	1	Intergenic	novelGene_579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATACGCGCTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	62640061	62640379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_62640100_62640400
ES_00010687	chr11	+	216	1	Intergenic	novelGene_583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCAAGACAAGGTTTCA	9553	False	NA	NA	False	NA	NA	NA	68966537	68966753	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_68966500_68966800
ES_00010688	chr11	+	234	1	Intergenic	novelGene_589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	69510380	69510614	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69510400_69510600
ES_00010689	chr11	+	292	1	Intergenic	novelGene_591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGCATCTTTGAGTTCG	NA	False	NA	NA	False	NA	NA	NA	69518076	69518368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69518100_69518400
ES_00010691	chr11	+	221	1	Intergenic	novelGene_598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTAATGGTGAAGTA	7894	False	NA	NA	False	ATTAAA	-11	NA	70518989	70519210	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_70519000_70519200
ES_00010693	chr11	+	372	1	Intergenic	novelGene_612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTCATTTAGTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74956705	74957077	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_74956700_74957100
ES_00010694	chr11	+	235	1	Intergenic	novelGene_613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGCAAGCGTGTGATCACA	756	False	NA	NA	False	ACTAAA	-36	NA	75194750	75194985	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75194800_75195000
ES_00010695	chr11	+	210	1	Intergenic	novelGene_620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCGTAACAAAACTCTGAT	NA	False	NA	NA	False	NA	NA	NA	76040543	76040753	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_76040500_76040800
ES_00010696	chr11	+	212	1	Intergenic	novelGene_625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGATGTATGTACATGT	NA	False	NA	NA	False	TTTAAA	-5	NA	77246440	77246652	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_77246400_77246700
ES_00010697	chr11	+	220	1	Intergenic	novelGene_630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77915953	77916173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_77916000_77916200
ES_00010698	chr11	+	205	1	Intergenic	novelGene_631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77972407	77972612	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_77972400_77972600
ES_00010699	chr11	+	250	1	Intergenic	novelGene_650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAGTTTACACAGAAA	NA	False	NA	NA	False	NA	NA	NA	80029205	80029455	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80029200_80029500
ES_00010700	chr11	+	388	1	Intergenic	novelGene_654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTCTGTTTCTTGAGAC	3608	False	NA	NA	False	NA	NA	NA	80177021	80177409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80177000_80177400
ES_00010701	chr11	+	292	1	Intergenic	novelGene_657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTCGGGAGGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	80314874	80315166	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80314900_80315200
ES_00010702	chr11	+	206	1	Intergenic	novelGene_661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCTGTAATCCTAACACT	NA	False	NA	NA	False	NA	NA	NA	82658754	82658960	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_82658800_82659000
ES_00010706	chr11	+	282	1	Intergenic	novelGene_678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTCCATTTTCTATAAG	NA	False	NA	NA	False	NA	NA	NA	87322533	87322815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87322500_87322800
ES_00010707	chr11	+	276	1	Intergenic	novelGene_680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAGACTAATTCTAAAAC	4665	False	NA	NA	False	NA	NA	NA	87336308	87336584	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87336300_87336600
ES_00010708	chr11	+	201	1	Intergenic	novelGene_683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCCTTTTTCAACGAA	NA	False	NA	NA	False	NA	NA	NA	87374732	87374933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87374700_87374900
ES_00010709	chr11	+	209	1	Intergenic	novelGene_686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	317	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTTAATAGAATTAATTC	NA	False	NA	NA	False	NA	NA	NA	87953778	87953987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87953800_87954000
ES_00010710	chr11	+	204	1	Intergenic	novelGene_687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTTTGTTATTGGGGA	NA	False	NA	NA	False	ACTAAA	-9	NA	88774967	88775171	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_88775000_88775200
ES_00010712	chr11	+	210	1	Intergenic	novelGene_691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAACCGTTCTATGTT	NA	False	NA	NA	False	NA	NA	NA	94816935	94817145	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_94816900_94817100
ES_00010713	chr11	+	201	1	Intergenic	novelGene_692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGGAAAATTTAAAGAAAAG	261	False	NA	NA	False	NA	NA	NA	94946078	94946279	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_94946100_94946300
ES_00010715	chr11	+	251	1	Intergenic	novelGene_694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAATAATTTTATGTTAC	1307	False	NA	NA	False	NA	NA	NA	95311628	95311879	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95311600_95311900
ES_00010717	chr11	+	201	1	Intergenic	novelGene_704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATCAATTTTCATGTTT	229	False	NA	NA	False	NA	NA	NA	96124997	96125198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96125000_96125200
ES_00010718	chr11	+	297	1	Intergenic	novelGene_705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTTTTACTATTAATA	2182	False	NA	NA	False	NA	NA	NA	96250793	96251090	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96250800_96251100
ES_00010719	chr11	+	235	1	Intergenic	novelGene_711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACACATAAGGCCCTGGG	NA	False	NA	NA	False	NA	NA	NA	97002701	97002936	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97002700_97002900
ES_00010721	chr11	+	200	1	Intergenic	novelGene_716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTTTTCTTTTACTT	820	False	NA	NA	False	NA	NA	NA	97311086	97311286	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97311100_97311300
ES_00010722	chr11	+	332	1	Intergenic	novelGene_721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCTTTTTCTAAAGAG	2804	False	NA	NA	False	NA	NA	NA	97601317	97601649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97601300_97601600
ES_00010723	chr11	+	220	1	Intergenic	novelGene_730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	384	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTTATTTTTATGTGC	NA	False	NA	NA	False	NA	NA	NA	98602733	98602953	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_98602700_98603000
ES_00010725	chr11	+	257	1	Intergenic	novelGene_732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGGGTGACTCTTACACA	NA	False	NA	NA	False	NA	NA	NA	100195379	100195636	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_100195400_100195600
ES_00010726	chr11	+	204	1	Intergenic	novelGene_740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTCAGAAAATATTTT	10	False	NA	NA	False	NA	NA	NA	101330825	101331029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101330800_101331000
ES_00010727	chr11	+	207	1	Intergenic	novelGene_741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTACTCTTGAGACAC	NA	False	NA	NA	False	NA	NA	NA	101360491	101360698	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101360500_101360700
ES_00010728	chr11	+	250	1	Intergenic	novelGene_745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCCCACCCTACTCCCCA	7374	False	NA	NA	False	NA	NA	NA	102171227	102171477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102171200_102171500
ES_00010729	chr11	+	223	1	Intergenic	novelGene_746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATCCCAGCACTTGGAA	NA	False	NA	NA	False	AAAAAG	-24	NA	102216343	102216566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102216300_102216600
ES_00010730	chr11	+	205	1	Intergenic	novelGene_748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTTAATCTGCGGCTGT	NA	False	NA	NA	False	NA	NA	NA	102230863	102231068	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102230900_102231100
ES_00010732	chr11	+	207	1	Intergenic	novelGene_752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGATGTTCCTGAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	103457374	103457581	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_103457400_103457600
ES_00010734	chr11	+	441	1	Intergenic	novelGene_758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTACTGTATATGAACTGG	NA	False	NA	NA	False	NA	NA	NA	105524689	105525130	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_105524700_105525100
ES_00010735	chr11	+	255	1	Intergenic	novelGene_763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGGATTCCATTGTAAA	8093	False	NA	NA	False	TTTAAA	-17	NA	106696764	106697019	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106696800_106697000
ES_00010737	chr11	+	212	1	Intergenic	novelGene_769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTGATGACTCCAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	107180052	107180264	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107180100_107180300
ES_00010738	chr11	+	206	1	Intergenic	novelGene_770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAGCATTCTTAATCT	NA	False	NA	NA	False	NA	NA	NA	107271389	107271595	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107271400_107271600
ES_00010739	chr11	+	202	1	Intergenic	novelGene_777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTACACACCTTTAATCT	NA	False	NA	NA	False	NA	NA	NA	107506826	107507028	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_107506800_107507000
ES_00010740	chr11	+	284	1	Intergenic	novelGene_780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTCTCTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	109914805	109915089	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_109914800_109915100
ES_00010742	chr11	+	205	1	Intergenic	novelGene_783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTTTGGTATTTTCCA	NA	False	NA	NA	False	NA	NA	NA	114456762	114456967	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_114456800_114457000
ES_00010743	chr11	+	218	1	Intergenic	novelGene_793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATCCCAGCACTCAGGA	7379	False	NA	NA	False	NA	NA	NA	115620871	115621089	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115620900_115621100
ES_00010744	chr11	+	270	1	Intergenic	novelGene_794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTTTTCTTTGAGAC	NA	False	NA	NA	False	NA	NA	NA	115930568	115930838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115930600_115930800
ES_00010745	chr11	+	202	1	Intergenic	novelGene_796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	416	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCACACTCTTTAGGAAG	NA	False	NA	NA	False	NA	NA	NA	116060570	116060772	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_116060600_116060800
ES_00010746	chr11	+	238	1	Intergenic	novelGene_798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTTGAATTCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	116774682	116774920	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_116774700_116774900
ES_00010747	chr11	+	220	1	Intergenic	novelGene_799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGATGTTTTTAAAGGG	NA	False	NA	NA	False	NA	NA	NA	116959756	116959976	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_116959800_116960000
ES_00010749	chr11	+	2796	2	NIC	ENSMUSG00000082286.12	novel	715	3	NA	NA	-71	936	intron_retention	FALSE	canonical	3	38	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACTACCATAGCTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	3078900	3081940	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_3079521_3079764
ES_00010752	chr11	+	4617	2	FSM	ENSMUSG00000047205.13	ENSMUST00000055931.5	4632	2	15	0	15	0	multi-exon	FALSE	canonical	2	4	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTCTCATCCTCAAAT	5260	False	NA	NA	False	AATAAA	-17	NA	3845254	3851296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_3845518_3846942
ES_00010753	chr11	+	1315	4	FSM	ENSMUSG00000003581.15	ENSMUST00000127165.2	722	4	-324	-269	-24	56	multi-exon	FALSE	canonical	3	22	junction_1	4.89897948556636	1338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCATGTAGTAGTAGATG	7826	False	NA	NA	False	NA	NA	NA	4085177	4087424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711
ES_00010754	chr11	+	801	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-49	-31959	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.679912280672	85	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGATATTTATGAATTATT	NA	False	NA	NA	False	AATAAA	-30	NA	4587697	4601426	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4601308
ES_00010755	chr11	+	563	3	FSM	ENSMUSG00000009076.11	ENSMUST00000141970.2	601	3	0	38	0	-38	multi-exon	FALSE	canonical	3	658	junction_1	25.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCATGTGCTGTCCTCTC	NA	False	NA	NA	False	NA	NA	NA	4678584	4682485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_4678648_4680186_4680268_4682066
ES_00010756	chr11	+	1794	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-59	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	72.0831767821036	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACCTGGTCTCCTGAGTG	NA	False	NA	14	True	AATAAA	-15	NA	5049373	5056089	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ES_00010757	chr11	+	201	1	Intergenic	novelGene_452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATGCCCTTCCCTTGTGC	6952	False	NA	NA	False	NA	NA	NA	6308495	6308696	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_6308500_6308700
ES_00010759	chr11	+	813	4	FSM	ENSMUSG00000020407.14	ENSMUST00000146696.2	813	4	0	0	0	0	multi-exon	FALSE	canonical	3	2674	junction_3	158.865421732428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGGACGGGCCTGAGC	NA	False	NA	-62	True	NA	NA	NA	9083014	9086082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_9083349_9084721_9084932_9085163_9085311_9085960
ES_00010760	chr11	+	208	2	Antisense	novelGene_ENSMUSG00000035455.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGCCTCATTGTTAATT	NA	False	NA	NA	False	NA	NA	NA	11712667	11744640	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_11712827_11744591
ES_00010761	chr11	+	834	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	14237	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	3	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	2956	False	NA	NA	False	NA	NA	NA	11832359	11835321	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_11832389_11832956_11833080_11834639
ES_00010762	chr11	+	314	1	FSM	ENSMUSG00000082410.2	ENSMUST00000119734.2	618	1	339	-35	339	35	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	16187267	16187581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_16187300_16187600
ES_00010763	chr11	+	4618	1	FSM	ENSMUSG00000084347.4	ENSMUST00000120718.2	1449	1	-1839	-1330	-1839	1330	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAAAAAAAATTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	16462693	16467311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_16462700_16467300
ES_00010764	chr11	+	3869	6	NNC	ENSMUSG00000045671.18	novel	4449	7	NA	NA	28593	1	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_1	25.0647162361755	53	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGCTTTGGGGTATTTG	7191	False	NA	4	True	TATAAA	-16	NA	19933162	19974027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_19933245_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
ES_00010765	chr11	+	223	1	FSM	ENSMUSG00000081346.2	ENSMUST00000121917.2	223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTTCAGCAGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20092567	20092790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_20092600_20092800
ES_00010766	chr11	+	2629	4	FSM	ENSMUSG00000020149.18	ENSMUST00000109602.8	2626	4	-3	0	0	0	multi-exon	FALSE	canonical	1	20	junction_2	873.996313239109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATAGATGCGCTTGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	20151431	20176850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_20151653_20165629_20165703_20174366_20174499_20174647
ES_00010767	chr11	+	1716	12	ISM	ENSMUSG00000020128.16	ENSMUST00000132017.2	2914	19	31479	0	0	0	3prime_fragment	FALSE	canonical	3	254	junction_4	42.0226227935178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTATTTTTTTACAGA	5959	False	NA	-52	True	AGTAAA	-9	NA	21250263	21270324	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
ES_00010768	chr11	+	2480	18	FSM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	0	312	0	-312	multi-exon	FALSE	canonical	2	7	junction_1	3.74350648863466	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTTCATAATGTGTAT	NA	False	NA	NA	False	AATAAA	-13	NA	21522234	21848677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
ES_00010769	chr11	+	222	2	Intergenic	novelGene_485	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	100	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCCCATACTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	22484192	22510133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_22484245_22509963
ES_00010771	chr11	+	1832	4	FSM	ENSMUSG00000049811.18	ENSMUST00000172602.9	1935	4	103	0	-15	0	multi-exon	FALSE	canonical	2	2	junction_1	7.40870359029762	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCATGTACCTCAAGAC	NA	False	NA	2	True	AATAAA	-13	NA	22958449	22973724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_22958627_22965658_22965885_22969999_22971134_22973429
ES_00010772	chr11	+	1726	4	FSM	ENSMUSG00000049811.18	ENSMUST00000238880.2	1935	4	209	0	209	0	multi-exon	FALSE	canonical	2	6	junction_1	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATTCCTGACACGGTT	NA	False	NA	17	True	AATAAA	-28	NA	22963595	22973739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_22963648_22965654_22965885_22969999_22971134_22973429
ES_00010773	chr11	+	200	1	Intergenic	novelGene_489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTAAATTCTTAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	23209836	23210036	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_23209800_23210000
ES_00010775	chr11	+	9780	61	NIC	ENSMUSG00000056342.17	novel	12200	80	NA	NA	-29	-8	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	28.0282149508907	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTGAGTGGCGAATGAT	292	False	NA	NA	False	NA	NA	NA	23256865	23406678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_23257017_23270660_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586_23311717_23313057_23313189_23313790_23314513_23317338_23317554_23320238_23320355_23320443_23320572_23323320_23323411_23325000_23325097_23327554_23327638_23331224_23331380_23332553_23332668_23334400_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524
ES_00010777	chr11	+	577	6	FSM	ENSMUSG00000004018.10	ENSMUST00000134445.2	577	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	98.7048124459998	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGATGACTTCAGAG	6237	False	NA	12	True	AATAAA	-19	NA	26418334	26421430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420806_26420949_26421324
ES_00010778	chr11	+	542	1	FSM	ENSMUSG00000068314.6	ENSMUST00000089614.5	622	1	168	-88	168	88	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAACAGCTCGCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	26543408	26543950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_26543400_26544000
ES_00010779	chr11	+	5132	17	NNC	ENSMUSG00000020463.16	novel	5125	16	NA	NA	0	19317	intron_retention	FALSE	non_canonical	0	0	junction_16	81.7159476096924	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTAGGAGAGGGAACATC	NA	False	NA	NA	False	NA	NA	NA	29122889	29190114	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455_29170791_29190100
ES_00010783	chr11	+	719	3	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	-108	-38783	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	15	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTTTTTAATTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	32483196	32509745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_32483560_32505123_32505289_32509554
ES_00010784	chr11	+	1287	9	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	0	-1088	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_2	23.5889274872767	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTAATTAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	32483304	32547440	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32547257
ES_00010785	chr11	+	593	1	FSM	ENSMUSG00000099902.2	ENSMUST00000119969.2	447	1	-37	-109	-37	109	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTCTTTTTCTCCTTTCC	NA	False	NA	NA	False	ATTAAA	-22	NA	33122881	33123474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_33122900_33123500
ES_00010786	chr11	+	295	1	Intergenic	novelGene_515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTCCAGGACAGCCAG	NA	False	NA	NA	False	NA	NA	NA	33461177	33461472	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_33461200_33461500
ES_00010787	chr11	+	5357	36	FSM	ENSMUSG00000056427.11	ENSMUST00000069837.4	5228	36	-133	4	-133	-4	multi-exon	TRUE	canonical	0	0	junction_4	2.67016776970425	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGGATAAGGGTAGAGAA	NA	False	NA	NA	False	AATAAA	-13	NA	35011917	35599330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_35012539_35062399_35062472_35068609_35068682_35125663_35125736_35399049_35399122_35435555_35435628_35455451_35455524_35461394_35461559_35469792_35469935_35479759_35479832_35485788_35485861_35490242_35490315_35501418_35501563_35503099_35503264_35512834_35512986_35514267_35514343_35520549_35520694_35521669_35521814_35523538_35523703_35524728_35524862_35539859_35539929_35541926_35541999_35542574_35542647_35550165_35550238_35552012_35552177_35554888_35555014_35560900_35560999_35566671_35566812_35570228_35570323_35574863_35575002_35577082_35577324_35579379_35579511_35589132_35589288_35591030_35591317_35593938_35594148_35598733
ES_00010788	chr11	+	474	2	Antisense	novelGene_ENSMUSG00000020330.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTATTTTGATCATGG	NA	False	NA	NA	False	NA	NA	NA	40592231	40593049	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_40592459_40592802
ES_00010789	chr11	+	427	1	NIC	ENSMUSG00000086475.2	novel	375	3	NA	NA	633	-1200	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGTTTCTGTTTTGTGT	NA	False	NA	NA	False	AAGAAA	-21	NA	41110296	41110723	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_41110300_41110700
ES_00010791	chr11	+	2694	1	Intergenic	novelGene_523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCCGTTTCTTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	41112387	41115081	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_41112400_41115100
ES_00010795	chr11	+	2739	2	FSM	ENSMUSG00000044950.8	ENSMUST00000109280.2	2739	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTATTTGTGTGTGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	43574971	43598018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_43575053_43595360
ES_00010797	chr11	+	577	1	FSM	ENSMUSG00000082792.2	ENSMUST00000121420.2	875	1	170	128	170	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCCCCCGACCTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	47432428	47433005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_47432400_47433000
ES_00010798	chr11	+	221	1	FSM	ENSMUSG00000082250.2	ENSMUST00000121448.2	531	1	196	114	196	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCCCACACCTACAGT	NA	False	NA	NA	False	NA	NA	NA	48486301	48486522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_48486300_48486500
ES_00010800	chr11	+	1108	8	NNC	ENSMUSG00000020372.16	novel	1542	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	2299.38196665352	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_48691400_48692489_48692666_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ES_00010801	chr11	+	742	2	FSM	ENSMUSG00000040350.17	ENSMUST00000131270.2	3876	2	130	3004	130	-1350	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATTCTTGAAATCAGAT	NA	False	NA	NA	False	NA	NA	NA	48738858	48740032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_48738968_48739399
ES_00010803	chr11	+	350	3	FSM	ENSMUSG00000020346.17	ENSMUST00000149406.2	402	3	0	52	0	-52	multi-exon	FALSE	canonical	1	2	junction_2	19	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTAGTGTCTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	49141391	49148747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_49141483_49142376_49142502_49148613
ES_00010804	chr11	+	202	2	Antisense	novelGene_ENSMUSG00000020362.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTATTCTTGACTGT	NA	False	NA	NA	False	NA	NA	NA	49601558	49639907	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_49601585_49639731
ES_00010805	chr11	+	4574	13	NIC	ENSMUSG00000020366.19	novel	4675	12	NA	NA	1	-313	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	132.897490779757	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAGCATGTCCAATTCC	NA	False	NA	24	True	AATACA	-23	NA	49737598	49776925	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_49737803_49745039_49745210_49745563_49745805_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ES_00010807	chr11	+	216	2	Antisense	novelGene_ENSMUSG00000076450.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	158	junction_1	0	168	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTGGAGAAAGAGAAGAAAA	6952	False	NA	NA	False	TTTAAA	-6	NA	50243960	50287163	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_50244012_50286998
ES_00010809	chr11	+	1427	9	FSM	ENSMUSG00000020385.17	ENSMUST00000109111.2	1427	9	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	22.366269246345	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51164277	51172591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ES_00010813	chr11	+	561	1	FSM	ENSMUSG00000058073.5	ENSMUST00000117979.2	375	1	11	-197	11	197	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCCACCCGAAAGGGTG	NA	False	NA	NA	False	NA	NA	NA	53091521	53092082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_53091500_53092100
ES_00010814	chr11	+	9304	21	NNC	ENSMUSG00000049470.14	novel	476	7	NA	NA	-1732	-591	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	38.9811172235994	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGCATGCACTGTGCTC	NA	False	NA	37	True	AATAAA	-24	NA	53257167	53312066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_53257256_53258901_53258994_53259486_53259614_53263104_53263885_53266415_53266461_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ES_00010815	chr11	+	2077	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	-8	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53661312	53668149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ES_00010816	chr11	+	206	2	Antisense	novelGene_ENSMUSG00000081769.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	233	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACATCTTTAATCCCAGC	NA	False	NA	NA	False	NA	NA	NA	53673508	53737706	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_53673615_53737606
ES_00010817	chr11	+	5196	12	NNC	ENSMUSG00000020261.16	novel	5264	11	NA	NA	3	0	intron_retention	TRUE	canonical	0	0	junction_11	18.7880742902829	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGCAAACTGTGTCTT	NA	False	NA	24	True	AATAAA	-24	NA	55095204	55127156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192_55127000_55127038
ES_00010818	chr11	+	784	1	FSM	ENSMUSG00000065061.3	ENSMUST00000083127.3	140	1	-646	2	-646	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCGCTCATTACAGCTGA	NA	False	NA	NA	False	AGTAAA	-1	NA	55372873	55373657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_55372900_55373700
ES_00010819	chr11	+	2142	1	FSM	ENSMUSG00000082476.2	ENSMUST00000118824.2	738	1	-1627	223	-1627	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTCTTGTTACTCCA	NA	False	NA	NA	False	NA	NA	NA	57338305	57340447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_57338300_57340400
ES_00010820	chr11	+	5632	3	Intergenic	novelGene_557	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	822	junction_2	1452.5	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTAGCCTGAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	57433716	57451297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_57434037_57445938_57450433_57450479
ES_00010821	chr11	+	394	1	Intergenic	novelGene_566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	9997	False	NA	NA	False	NA	NA	NA	58071002	58071396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_58071000_58071400
ES_00010822	chr11	+	1848	12	NNC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	49.3946830209872	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7709	False	NA	14	True	AATAAA	-21	NA	58197930	58205439	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200782_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ES_00010823	chr11	+	395	4	ISM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	58	5729	0	4811	5prime_fragment	FALSE	canonical	3	18	junction_1	3.55902608401044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAACAGTCAGTGTATCC	NA	False	NA	NA	False	NA	NA	NA	58738041	58747053	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886
ES_00010824	chr11	+	3929	1	FSM	ENSMUSG00000072915.4	ENSMUST00000093768.4	2524	1	-1193	-212	-1193	212	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGAGATTTCCTTAATT	NA	False	NA	NA	False	NA	NA	NA	58749065	58752994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58749100_58753000
ES_00010826	chr11	+	2301	7	FSM	ENSMUSG00000020455.17	ENSMUST00000108810.10	2301	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	38.6566078870525	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGCTTATCCTGTG	1688	False	NA	15	True	AATAAA	-15	NA	58868940	58882284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58878458_58878507_58879550_58879574_58879654_58879756_58881012
ES_00010827	chr11	+	4294	6	FSM	ENSMUSG00000036819.15	ENSMUST00000045279.13	4315	6	21	0	21	0	multi-exon	FALSE	canonical	0	0	junction_3	19.0326036053925	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9502	False	NA	7	True	NA	NA	NA	59340891	59349299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344653_59344886_59345758_59345906_59346132
ES_00010828	chr11	+	294	2	FSM	ENSMUSG00000085551.2	ENSMUST00000130205.2	274	2	-23	3	-23	-3	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCTCAGCTCTGACGA	1980	False	NA	NA	False	AATAAA	-13	NA	59812301	59812712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_59812434_59812550
ES_00010829	chr11	+	2042	15	NNC	ENSMUSG00000056598.17	novel	1917	14	NA	NA	-223	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	10.2678416148951	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGGTGTCAGTATTCTC	3198	False	NA	NA	False	AATATA	-22	NA	60243931	60285167	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60244009_60244106_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619_60266733_60268635_60268811_60275039_60275172_60278118_60278190_60279638_60279763_60284522_60284655_60284950
ES_00010830	chr11	+	2429	8	FSM	ENSMUSG00000056598.17	ENSMUST00000094140.9	2438	8	0	9	0	-9	multi-exon	FALSE	canonical	2	6	junction_1	9.45235096552758	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACACCACCCTCCAAAG	3421	False	NA	NA	False	NA	NA	NA	60244154	60268095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619
ES_00010831	chr11	+	1474	8	FSM	ENSMUSG00000018415.15	ENSMUST00000139477.8	1717	8	108	135	-9	-135	multi-exon	FALSE	canonical	1	3	junction_6	198.739394531571	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTTGGTGTTCCGAAAG	NA	False	NA	NA	False	NA	NA	NA	60308078	60341618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804_60332957_60339272_60339385_60341401
ES_00010833	chr11	+	3346	22	NNC	ENSMUSG00000020536.13	novel	4303	22	NA	NA	-51	-998	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	90.9632753385533	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACACCCTTCTGATTAAAT	NA	False	NA	NA	False	NA	NA	NA	60590497	60604014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600332_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603924_60603948
ES_00010834	chr11	+	4240	22	NNC	ENSMUSG00000020536.13	novel	4268	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	85.2489218982109	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590670	60605012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597266_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603924_60603948
ES_00010835	chr11	+	2517	4	NIC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	59.6713219785406	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619275	60623777	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_60619394_60621108_60621262_60621408_60621619_60621741
ES_00010836	chr11	+	1534	7	NNC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGCTCTTAGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	60721504	60749249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ES_00010837	chr11	+	2214	8	NNC	ENSMUSG00000042569.14	novel	3277	7	NA	NA	0	27228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	92.6710222634181	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60721504	60778249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543_60749787_60778077
ES_00010839	chr11	+	1312	9	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	4787	0	4787	0	3prime_fragment	TRUE	canonical	2	6	junction_2	5.14629721255973	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATGCAATGCTTCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	61104357	61109247	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
ES_00010840	chr11	+	2870	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53093	1637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	132.705187037533	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGCCTGTTTGTATTT	NA	False	NA	29	True	ATTAAA	-37	NA	62402526	62406880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_62402636_62402963_62403098_62403729_62405978_62406501
ES_00010842	chr11	+	2581	15	FSM	ENSMUSG00000018507.17	ENSMUST00000102643.2	2650	15	69	0	69	0	multi-exon	FALSE	canonical	0	0	junction_1	4.99642729500647	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAGTCTTCTAGAAG	8397	False	NA	9	True	TATAAA	-11	NA	62467019	62491125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_62467123_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
ES_00010843	chr11	+	263	2	Intergenic	novelGene_580	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTACAGTTAAGGGTGCTA	NA	False	NA	NA	False	NA	NA	NA	63836118	63836409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_63836370_63836397
ES_00010844	chr11	+	959	3	FSM	ENSMUSG00000087497.8	ENSMUST00000146333.2	959	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4332	False	NA	NA	False	AATAAA	-22	NA	63970407	63974085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_63970604_63970684_63970841_63973478
ES_00010845	chr11	+	822	2	FSM	ENSMUSG00000047759.7	ENSMUST00000058652.6	3939	2	974	2143	974	-2143	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGCCGCGCTCACCCCA	NA	False	NA	NA	False	NA	NA	NA	64327131	64411524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_64327453_64411023
ES_00010846	chr11	+	2966	18	ISM	ENSMUSG00000020908.15	ENSMUST00000007301.14	5992	40	14894	0	14894	0	3prime_fragment	FALSE	canonical	2	6	junction_1	6.2035819544634	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTCTTGTGCCTT	NA	False	NA	11	True	AATAAA	-22	NA	66984019	66993117	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_66984140_66984266_66984413_66984492_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ES_00010851	chr11	+	2771	5	NNC	ENSMUSG00000020894.17	novel	2205	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	8	junction_4	54.0156227400925	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCCAAAATCTTTT	NA	False	NA	18	True	AATAAA	-18	NA	68979347	68983210	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801_68981407_68981430
ES_00010852	chr11	+	360	3	FSM	ENSMUSG00000020892.11	ENSMUST00000139257.2	638	3	278	0	278	0	multi-exon	FALSE	canonical	2	11	junction_1	1	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTACCTAGACACCCTC	567	False	NA	NA	False	NA	NA	NA	69026642	69033754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69026820_69033011_69033113_69033672
ES_00010853	chr11	+	557	4	ISM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	10450	1	10450	-1	3prime_fragment	FALSE	canonical	3	17	junction_3	8.17856276425687	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGGTCTGAGAACGTGGG	NA	False	NA	6	True	AATAAA	-17	NA	69058264	69060617	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_69058304_69059603_69059705_69060043_69060215_69060371
ES_00010855	chr11	+	908	6	FSM	ENSMUSG00000019461.13	ENSMUST00000152566.8	908	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	3.44093010681705	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTATGAATTAGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	69737442	69739201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039
ES_00010856	chr11	+	661	4	FSM	ENSMUSG00000047284.15	ENSMUST00000153041.3	752	4	0	91	0	-91	multi-exon	FALSE	canonical	3	25	junction_3	16.3095064303001	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCCTTTACCAAACATCT	NA	False	NA	NA	False	NA	NA	NA	69798089	69799256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69798167_69798249_69798329_69798662_69798833_69798921
ES_00010857	chr11	+	431	2	FSM	ENSMUSG00000023170.15	ENSMUST00000134581.2	431	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCAAACCAATAAAATGTAC	6082	False	NA	-23	True	NA	NA	NA	69806866	69807382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69806939_69807023
ES_00010858	chr11	+	4580	6	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	-128	0	intron_retention	FALSE	canonical	3	31	junction_1	22.5601418435257	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69826493	69832421	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_69827075_69827722_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ES_00010859	chr11	+	3123	11	Fusion	ENSMUSG00000018567.15_ENSMUSG00000018559.17	novel	1627	8	NA	NA	380	0	multi-exon	FALSE	canonical	3	123	junction_4	345.23319654981	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAGCTGAATTGAATTTG	NA	False	NA	0	True	AATAAA	-10	NA	69872361	69885761	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_+_69872412_69875079_69875147_69875241_69875361_69875559_69875632_69879438_69879556_69879653_69879766_69880307_69880393_69880802_69882629_69883190_69883270_69883407_69883527_69885284
ES_00010860	chr11	+	932	3	FSM	ENSMUSG00000018567.15	ENSMUST00000144443.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	916	junction_1	30.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAGCTGAATTGAATTTG	5269	False	NA	0	True	AATAAA	-10	NA	69882509	69885761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_69882629_69883190_69883527_69885284
ES_00010861	chr11	+	284	1	ISM	ENSMUSG00000020886.18	ENSMUST00000231221.2	6326	8	15194	2940	3436	2443	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGTTTTTCGAGACAG	2897	False	NA	NA	False	NA	NA	NA	69924898	69925182	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_69924900_69925200
ES_00010863	chr11	+	883	2	FSM	ENSMUSG00000018923.14	ENSMUST00000152348.2	870	2	-13	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACTTGGGAAGTAGAGG	NA	False	NA	33	True	AATAAA	-43	NA	70342744	70344390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70343165_70343927
ES_00010864	chr11	+	447	3	FSM	ENSMUSG00000018919.11	ENSMUST00000141924.2	456	3	9	0	9	0	multi-exon	FALSE	canonical	3	5	junction_2	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGTGGAATAAACCACCC	NA	False	NA	NA	False	AAAACA	-28	NA	70401040	70401793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70401178_70401394_70401579_70401667
ES_00010865	chr11	+	5021	33	NIC	ENSMUSG00000020827.19	novel	4994	33	NA	NA	-28	0	combination_of_known_junctions	TRUE	canonical	3	25	junction_21	22.8920701335637	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTTTGAGATCCTACT	1438	False	NA	NA	False	AATAAA	-19	NA	70453678	70505304	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ES_00010866	chr11	+	1500	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1244	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	16.078320705043	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	5869	False	NA	13	True	AATAAA	-16	NA	70546783	70553339	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_70546896_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ES_00010867	chr11	+	1566	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	-2	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	19.1466718079752	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7113	False	NA	13	True	AATAAA	-16	NA	70548027	70553339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ES_00010868	chr11	+	5038	22	NIC	ENSMUSG00000020821.18	novel	6684	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.81577866332739	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTTGTCTTTAACTC	NA	False	NA	10	True	AATAAA	-15	NA	70591373	70621250	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_70591536_70593597_70593732_70594093_70594171_70594524_70594705_70595283_70595350_70595724_70595904_70595995_70596108_70596506_70596585_70596725_70596792_70596878_70596955_70597506_70597586_70597766_70597913_70599267_70599438_70599604_70599685_70599776_70599853_70608244_70608325_70609824_70609920_70614873_70614958_70615647_70615835_70615929_70616003_70616713_70617329_70619027
ES_00010869	chr11	+	346	1	FSM	ENSMUSG00000081968.2	ENSMUST00000119375.2	474	1	-101	229	-101	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCACTGAGTCAGCCATG	5697	False	NA	NA	False	NA	NA	NA	70770152	70770498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_70770200_70770500
ES_00010871	chr11	+	219	3	Antisense	novelGene_ENSMUSG00000069830.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	175	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTTTTCCTTGACC	6198	False	NA	NA	False	NA	NA	NA	70977354	71011582	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_70977371_71006701_71006719_71011396
ES_00010873	chr11	+	216	2	Intergenic	novelGene_602	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3469	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAGAAAGTGAGCTG	NA	False	NA	NA	False	NA	NA	NA	72188972	72189427	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_72189026_72189264
ES_00010874	chr11	+	1493	5	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-47	-618	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	4.65698400254929	212	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAGGCCTAGAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	72192407	72203941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_72192536_72194152_72194289_72199432_72199751_72202781_72202820_72203068
ES_00010875	chr11	+	1272	5	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-21	-600	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4.65698400254929	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATGAAGCAGGAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	72192433	72203959	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_72192536_72194152_72194289_72199432_72199538_72202781_72202820_72203068
ES_00010877	chr11	+	882	2	FSM	ENSMUSG00000040471.18	ENSMUST00000108499.2	874	2	-8	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	675	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTCCTCCTCATCTCCT	NA	False	NA	NA	False	NA	NA	NA	72326351	72328607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72326591_72327964
ES_00010878	chr11	+	3931	7	FSM	ENSMUSG00000020794.14	ENSMUST00000138247.8	3931	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	366.180017963236	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_72498462_72536362_72536479_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ES_00010879	chr11	+	303	2	Antisense	novelGene_ENSMUSG00000020745.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	74527660	74597323	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_74527803_74597162
ES_00010882	chr11	+	5802	20	NNC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	153	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	45.1448883244632	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCTGCTGGTCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	74816801	75055274	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_74816830_74818990_74819098_74819818_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
ES_00010883	chr11	+	210	1	FSM	ENSMUSG00000084224.2	ENSMUST00000119634.2	400	1	263	-73	263	73	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCATTAAACAGCAACG	NA	False	NA	NA	False	NA	NA	NA	75318841	75319051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75318800_75319100
ES_00010884	chr11	+	260	1	Intergenic	novelGene_614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGAAGTGTACCACCGC	NA	False	NA	NA	False	NA	NA	NA	75361975	75362235	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75362000_75362200
ES_00010885	chr11	+	1489	8	FSM	ENSMUSG00000038195.7	ENSMUST00000042972.7	1489	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.98976975388345	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCAGTCTGTCTGTCT	NA	False	NA	NA	False	AATAAA	-21	NA	75400919	75403994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75401199_75401269_75401364_75401457_75401565_75401647_75401834_75402114_75402261_75402605_75402729_75403176_75403261_75403524
ES_00010886	chr11	+	2917	11	FSM	ENSMUSG00000038188.18	ENSMUST00000042808.13	2887	11	-35	5	-35	-1	multi-exon	FALSE	canonical	1	3	junction_9	2.37697286480094	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATTAATTAATTTATTT	NA	False	NA	NA	False	ATTAAA	-20	NA	75404330	75417403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75414600_75414723_75414816_75414964_75416195
ES_00010887	chr11	+	2613	9	FSM	ENSMUSG00000038188.18	ENSMUST00000118243.2	2617	9	-1	5	0	-1	multi-exon	FALSE	canonical	0	0	junction_8	3.21859829739593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATTAATTAATTTATTT	NA	False	NA	NA	False	ATTAAA	-20	NA	75404365	75417403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75416195
ES_00010888	chr11	+	1657	13	NNC	ENSMUSG00000017781.18	novel	3761	12	NA	NA	0	58689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	284.882724408952	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACCTGTCTCAAAATGA	NA	False	NA	NA	False	NA	NA	NA	75478984	75578319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494307_75498932_75498941_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942_75517555_75578285
ES_00010890	chr11	+	1911	4	NIC	ENSMUSG00000069808.14	novel	2130	5	NA	NA	16	-1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	24.0739601136904	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTATGTGCCCTGGC	3422	False	NA	NA	False	ATTAAA	-16	NA	76092856	76100241	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_76093082_76093377_76093462_76097953_76098050_76098735
ES_00010892	chr11	+	10400	5	NNC	ENSMUSG00000037857.17	novel	5158	4	NA	NA	-42	5226	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	84.6119820120058	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGGTGTTTGTGGGTTTT	NA	False	NA	13	True	AATAAA	-16	NA	77576938	77608793	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508_77601907_77601932
ES_00010893	chr11	+	1029	1	Intergenic	novelGene_627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTGGAGGCAGCTCAC	NA	False	NA	NA	False	NA	NA	NA	77589243	77590272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_77589200_77590300
ES_00010894	chr11	+	7477	42	NNC	ENSMUSG00000000631.21	novel	7513	42	NA	NA	0	13487	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_41	26.0695313346734	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGCATACAGGTGCATC	NA	False	NA	NA	False	NA	NA	NA	77654126	77770293	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516_77756807_77770262
ES_00010895	chr11	+	4475	14	Fusion	ENSMUSG00000061981.15_ENSMUSG00000020834.18	novel	2699	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	86	junction_3	124.047375946813	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTTCATCGTATATTC	NA	False	NA	18	True	AATAAA	-15	NA	77923177	77951257	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_+_77923530_77924838_77924963_77925100_77925413_77927687_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ES_00010896	chr11	+	2568	11	FSM	ENSMUSG00000061981.15	ENSMUST00000073660.7	2568	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	151.687969199934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928809	77951260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ES_00010897	chr11	+	200	2	Antisense	novelGene_ENSMUSG00000020832.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	170	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCTGGAGAAATGTTCAG	NA	False	NA	NA	False	NA	NA	NA	77969467	77984976	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_77969520_77984828
ES_00010898	chr11	+	1243	10	FSM	ENSMUSG00000002059.19	ENSMUST00000150941.8	795	10	-101	-347	-91	0	multi-exon	FALSE	canonical	2	3	junction_1	46.6883547486501	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTTCTTTCTTTCTTTA	5934	False	NA	18	True	ATTAAA	-12	NA	78079164	78083011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78079338_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ES_00010902	chr11	+	428	2	FSM	ENSMUSG00000002055.10	ENSMUST00000150016.8	428	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACACTGGCTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	78206182	78206867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78206469_78206725
ES_00010904	chr11	+	706	3	FSM	ENSMUSG00000017390.16	ENSMUST00000156039.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	70	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGCTCCTTATGCTCTGAG	NA	False	NA	-34	True	NA	NA	NA	78216154	78217534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_78216239_78216467_78216643_78217087
ES_00010905	chr11	+	203	1	Intergenic	novelGene_634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAATGACATTAGAAA	NA	False	NA	NA	False	NA	NA	NA	78218682	78218885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_78218700_78218900
ES_00010906	chr11	+	2315	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	40	-6	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGATGACCATAACTCGT	NA	False	NA	22	True	NA	NA	NA	78219280	78233602	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
ES_00010908	chr11	+	9217	57	FSM	ENSMUSG00000020716.17	ENSMUST00000108251.9	9217	57	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_51	4.36577014736138	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACGAATTCTTAAGAAATAC	NA	False	NA	NA	False	AATAAA	-44	NA	79230617	79469768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_79230886_79275000_79275145_79277480_79277565_79281034_79281226_79286680_79286788_79299239_79299308_79299527_79299604_79300219_79300378_79302321_79302496_79302880_79303004_79303509_79303585_79309377_79309510_79316338_79316474_79319403_79319518_79325670_79325751_79327515_79327640_79329512_79329675_79331673_79331924_79332454_79332529_79332716_79332801_79334594_79335036_79335425_79335566_79335849_79335973_79336541_79336626_79337631_79337749_79338309_79338492_79338950_79339163_79344628_79344791_79344924_79345029_79349596_79349733_79359542_79359702_79360598_79360697_79362260_79362408_79364154_79364302_79366598_79366710_79426428_79426862_79427618_79427960_79431155_79431359_79436179_79436374_79437097_79437239_79437796_79438077_79438493_79438709_79439299_79439362_79439499_79439615_79440233_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456246_79456378_79456745_79456847_79459475_79459619_79459949_79459997_79461056_79461274_79469079
ES_00010909	chr11	+	11917	58	FSM	ENSMUSG00000020716.17	ENSMUST00000071325.9	11917	58	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_52	4.46062766190997	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAGGAGTTATTTATCA	NA	False	NA	NA	False	AGTAAA	-24	NA	79230650	79472438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_79230886_79275000_79275145_79277480_79277565_79281034_79281226_79286680_79286788_79299239_79299308_79299527_79299604_79300219_79300378_79302321_79302496_79302880_79303004_79303509_79303585_79309377_79309510_79316338_79316474_79319403_79319518_79325670_79325751_79327515_79327640_79329512_79329675_79331673_79331924_79332454_79332529_79332716_79332801_79334594_79335036_79335425_79335566_79335849_79335973_79336541_79336626_79337631_79337749_79338309_79338492_79338950_79339163_79344628_79344791_79344924_79345029_79349596_79349733_79354058_79354122_79359542_79359702_79360598_79360697_79362260_79362408_79364154_79364302_79366598_79366710_79426428_79426862_79427618_79427960_79431155_79431359_79436179_79436374_79437097_79437239_79437796_79438077_79438493_79438709_79439299_79439362_79439499_79439615_79440233_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456246_79456378_79456745_79456847_79459475_79459619_79459949_79459997_79461056_79461274_79469079
ES_00010910	chr11	+	295	1	Intergenic	novelGene_641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAATAAGAATTAAGAAGTT	NA	False	NA	NA	False	AATGAA	-40	NA	79276463	79276758	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_79276500_79276800
ES_00010911	chr11	+	7168	16	NNC	ENSMUSG00000017639.14	novel	7156	15	NA	NA	-43	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	11	junction_1	41.9765013628657	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79481994	79588849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_79482261_79510454_79510543_79511292_79511382_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548_79587486_79587516
ES_00010912	chr11	+	6980	13	NNC	ENSMUSG00000017639.14	novel	677	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	29.6014029322185	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79551389	79588849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_79551683_79571613_79571838_79574235_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
ES_00010914	chr11	+	1785	11	FSM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	5.38609320379809	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAACAACAAAAACTACAG	NA	False	NA	NA	False	NA	NA	NA	80044930	80069784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871_80068101_80069221
ES_00010915	chr11	+	1781	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	34	-6	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	26.4491125665032	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAACTGTGTTGAGTTCA	NA	False	NA	28	True	NA	NA	NA	80074710	80090577	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_80075082_80080049_80080194_80087698_80087774_80089386
ES_00010917	chr11	+	517	2	FSM	ENSMUSG00000017692.9	ENSMUST00000138846.2	827	2	0	310	0	-310	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTGTCAGGTTCTCTTG	612	False	NA	NA	False	NA	NA	NA	80210515	80214674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_80210543_80214184
ES_00010918	chr11	+	323	2	Intergenic	novelGene_660	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCAGAAGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	82572769	82591763	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_82572802_82591472
ES_00010919	chr11	+	5846	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173722.8	5797	20	-49	0	12	0	multi-exon	FALSE	canonical	0	0	junction_1	44.7105805272123	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTCTACCTGAGATGTT	NA	False	NA	-65	True	AAAAAG	-44	NA	82671979	82695024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_82672099_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ES_00010920	chr11	+	3060	20	NIC	ENSMUSG00000020697.17	novel	3056	20	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_19	50.3257532526162	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGTGTCTGTCTCTC	NA	False	NA	NA	False	ATTAAA	-34	NA	82672003	82691479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_82672103_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82691324
ES_00010921	chr11	+	602	1	ISM	ENSMUSG00000054404.14	ENSMUST00000067443.10	5979	6	11292	845	8733	-845	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAATTTCCAAGA	NA	False	NA	NA	False	NA	NA	NA	82854219	82854821	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_82854200_82854800
ES_00010922	chr11	+	2818	2	NNC	ENSMUSG00000093483.2	novel	471	2	NA	NA	-19	0	intron_retention	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5829	False	NA	8	True	ATTAAA	-17	NA	83182505	83185456	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_83182659_83182791
ES_00010923	chr11	+	679	6	FSM	ENSMUSG00000035152.15	ENSMUST00000176944.8	651	6	-28	0	-28	0	multi-exon	FALSE	canonical	2	7	junction_1	85.7638618533471	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCTCAGAATATCAATAAG	4428	False	NA	NA	False	NA	NA	NA	83189821	83223884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_83189880_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811
ES_00010924	chr11	+	9184	55	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-52	4	combination_of_known_junctions	TRUE	canonical	1	3	junction_50	41.0147853831693	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTGTCATTTCAACTCA	NA	False	NA	16	True	AATAAA	-24	NA	84070604	84292481	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_84070753_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84181113_84181138_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ES_00010929	chr11	+	3737	27	FSM	ENSMUSG00000059439.16	ENSMUST00000108062.8	3724	27	-13	0	-13	0	multi-exon	FALSE	canonical	0	0	junction_16	39.938340049596	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGTTGCTGGGGTCA	3465	False	NA	14	True	AATAAA	-22	NA	85243979	85716884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85434753_85434799_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474821_85692610_85692779_85704825_85704892_85712847_85712939_85716027
ES_00010931	chr11	+	1151	4	NNC	ENSMUSG00000059439.16	novel	412	3	NA	NA	-6172	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.0388511535855	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGTTGCTGGGGTCA	2615	False	NA	14	True	AATAAA	-22	NA	85686474	85716884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_85686510_85692610_85692779_85712847_85712939_85716027
ES_00010932	chr11	+	2375	3	NNC	ENSMUSG00000085208.4	novel	4423	2	NA	NA	-16	10832	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	12	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTAAAATGATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	86092179	86112850	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_86092379_86097778_86099759_86112654
ES_00010933	chr11	+	1976	9	FSM	ENSMUSG00000020513.16	ENSMUST00000167178.9	1976	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	14.9702830634561	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCAGTCTGTTAAGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	86435816	86458185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_86436163_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ES_00010934	chr11	+	878	5	FSM	ENSMUSG00000020492.12	ENSMUST00000142263.8	861	5	-17	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	98.5507483482495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTCCATGTTATAT	NA	False	NA	12	True	AATAAA	-20	NA	87000059	87015460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87000131_87006970_87007017_87008493_87008671_87012759_87012966_87015082
ES_00010935	chr11	+	5488	23	NIC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	8	-13	combination_of_known_junctions	FALSE	canonical	3	6	junction_19	107.708063112769	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGAACAATTGTCCTGTT	1924	False	NA	0	True	AATAAA	-2	NA	87017910	87111496	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87097589_87097780_87100594_87100714_87107262_87107374_87109077
ES_00010936	chr11	+	697	1	FSM	ENSMUSG00002076650.1	ENSMUST00020182758.1	216	1	13	-494	13	494	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATTAAATAAGTAATTT	2432	False	NA	NA	False	NA	NA	NA	87334075	87334772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87334100_87334800
ES_00010937	chr11	+	201	1	FSM	ENSMUSG00002075931.1	ENSMUST00020182511.1	216	1	16	-1	16	1	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTTTTATTTTACATGTTT	NA	False	NA	NA	False	NA	NA	NA	87362209	87362410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_87362200_87362400
ES_00010940	chr11	+	2590	19	NNC	ENSMUSG00000034121.13	novel	2499	18	NA	NA	-5061	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	44.1900008241628	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1395	False	NA	18	True	TATAAA	-20	NA	87738979	87754629	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87739055_87744024_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ES_00010941	chr11	+	2296	17	NNC	ENSMUSG00000034121.13	novel	688	4	NA	NA	-5008	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	42.5595171495166	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1448	False	NA	18	True	TATAAA	-20	NA	87739032	87754629	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_87739055_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ES_00010943	chr11	+	4008	9	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-4	0	intron_retention	FALSE	canonical	3	336	junction_4	463.976275659651	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9427	False	NA	15	True	AATAAA	-17	NA	88861073	88882439	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_88861099_88861243_88861306_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ES_00010944	chr11	+	4021	9	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	258	junction_1	474.065775367723	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9431	False	NA	15	True	AATAAA	-17	NA	88861077	88882439	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_88861116_88861243_88861306_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ES_00010945	chr11	+	2589	7	NNC	ENSMUSG00000033983.15	novel	2607	7	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_4	128.853167942775	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	-15	True	NA	15	True	AATAAA	-17	NA	88864774	88882439	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875846_88875913_88878804_88878894_88881493
ES_00010946	chr11	+	5358	16	NIC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	45.102648357817	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776677	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
ES_00010947	chr11	+	5243	16	NNC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	43.6513459128124	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776685	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_93776889_93795984_93796185_93799629_93799770_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00010948	chr11	+	5406	18	NNC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	46.4135912560879	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776978	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_93777243_93777847_93777900_93782164_93782215_93795984_93796185_93799629_93799770_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00010949	chr11	+	5302	17	NIC	ENSMUSG00000059474.14	novel	5232	16	NA	NA	47	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_6	51.677938958515	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93777091	93837811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_93777243_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93809656_93809774_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ES_00010951	chr11	+	517	3	FSM	ENSMUSG00000020859.17	ENSMUST00000127066.2	803	3	12	274	-3	-274	multi-exon	FALSE	canonical	2	3	junction_2	2.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGAATGGTGATTCAGAA	NA	False	NA	NA	False	NA	NA	NA	93935027	93951125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_93935352_93939233_93939385_93951083
ES_00010952	chr11	+	340	4	NNC	ENSMUSG00000086003.8	novel	695	6	NA	NA	15450	-6	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	65.6725885654653	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTATTAGTGTTTACCTG	NA	False	NA	9	True	AATAAA	-16	NA	94041935	94046596	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_94041965_94042163_94042239_94046281_94046324_94046402
ES_00010953	chr11	+	1497	5	FSM	ENSMUSG00000020864.14	ENSMUST00000051221.13	1477	5	-20	0	-8	0	multi-exon	TRUE	canonical	3	12	junction_4	200.158687046054	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTGGAAAGTAGTCTTGA	3986	False	NA	20	True	AATAAA	-20	NA	94218818	94230749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230458
ES_00010956	chr11	+	290	2	ISM	ENSMUSG00000085143.2	ENSMUST00000122837.2	630	3	-84	5139	-84	-5139	5prime_fragment	FALSE	canonical	3	7	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTTTCAGCTTTGTACC	NA	False	NA	NA	False	NA	NA	NA	95201170	95210183	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_95201280_95210002
ES_00010957	chr11	+	1334	9	NNC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	91.4972677187685	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275719	95282602	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_95275940_95276626_95276731_95277311_95277456_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ES_00010958	chr11	+	10026	7	NNC	ENSMUSG00000075595.10	novel	3982	6	NA	NA	-129	0	intron_retention	FALSE	canonical	3	5	junction_2	27.4615893365422	46	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCACGTGTCTTCTCTTC	NA	False	NA	9	True	AGTAAA	-19	NA	95603707	95663179	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_95604055_95639825_95639890_95640042_95640434_95643700_95643849_95644187_95644304_95644736_95644882_95654364
ES_00010959	chr11	+	209	2	Intergenic	novelGene_702	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	381	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTCTCTGCTGGTAAAA	399	False	NA	NA	False	NA	NA	NA	96007731	96013424	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96007787_96013270
ES_00010960	chr11	+	768	5	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	84	4375	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	6.48074069840786	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACATGTCCTTTTGGGCC	8898	False	NA	5	True	AATAAA	-18	NA	96142553	96160069	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_96142640_96152437_96152590_96154999_96155212_96155549_96155672_96159873
ES_00010961	chr11	+	625	1	FSM	ENSMUSG00000075587.6	ENSMUST00000117614.2	555	1	-33	-37	-33	37	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCAACCAGG	161	False	NA	NA	False	AATAAA	-37	NA	96282904	96283529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96282900_96283500
ES_00010962	chr11	+	2176	5	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	133	junction_1	232.294398339693	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_96680180_96691599_96691774_96692254_96692433_96693553_96693649_96697441
ES_00010963	chr11	+	2352	5	NNC	ENSMUSG00000018666.14	novel	2377	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	296.187862681778	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_96680180_96691599_96691774_96692254_96692433_96693553_96693825_96697441
ES_00010964	chr11	+	1048	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	133	junction_1	246.531620689923	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96680074	96698975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_96680180_96691599_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
ES_00010966	chr11	+	627	3	FSM	ENSMUSG00000020877.12	ENSMUST00000133054.8	605	3	-22	0	-8	0	multi-exon	FALSE	canonical	3	106	junction_1	14	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTAATTTTTTTT	NA	False	NA	NA	False	GATAAA	-17	NA	96920755	96922032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_96920882_96921241_96921416_96921705
ES_00010968	chr11	+	204	2	Intergenic	novelGene_712	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	951	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGAGGTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	97081445	97093478	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97081499_97093327
ES_00010969	chr11	+	5629	25	NNC	ENSMUSG00000049807.17	novel	4531	19	NA	NA	-11086	-10	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	12.2301426356723	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAGGCATGAACCAGTG	NA	False	NA	0	True	AATAAA	-7	NA	97295272	97393214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_97295357_97335009_97335172_97337334_97337378_97338995_97339092_97339270_97339350_97339478_97339534_97342217_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354337_97354458_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
ES_00010970	chr11	+	7066	20	NNC	ENSMUSG00000038437.12	novel	666	7	NA	NA	-644	0	intron_retention	FALSE	canonical	0	0	junction_12	5.57298589134697	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGCTTTGTCTGGCTT	NA	False	NA	15	True	AATAAA	-34	NA	97553595	97576289	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_97553655_97555780_97555861_97556311_97556367_97556555_97556666_97557615_97557720_97557900_97557995_97560249_97560463_97561078_97561178_97563282_97563419_97564285_97564898_97565263_97565446_97565599_97565709_97566964_97567032_97567195_97567339_97567687_97567886_97567973_97568063_97569139_97569490_97569790_97569882_97571295_97571653_97572371
ES_00010971	chr11	+	7206	20	FSM	ENSMUSG00000038437.12	ENSMUST00000107586.3	7206	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	6.09981608187386	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGCTTTGTCTGGCTT	NA	False	NA	15	True	AATAAA	-34	NA	97554397	97576289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97554507_97555780_97555861_97556311_97556367_97556555_97556666_97557615_97557720_97557900_97557995_97560249_97560463_97561078_97561178_97563282_97563509_97564285_97564898_97565263_97565446_97565599_97565709_97566964_97567032_97567195_97567339_97567687_97567886_97567973_97568063_97569139_97569490_97569790_97569882_97571295_97571653_97572371
ES_00010972	chr11	+	200	1	Intergenic	novelGene_722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCACAAACTGCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	97681824	97682024	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97681800_97682000
ES_00010973	chr11	+	1118	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAGAATGAATGA	5329	False	NA	NA	False	AATAAA	-2	NA	97732144	97733869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_97732403_97733009
ES_00010974	chr11	+	203	1	Intergenic	novelGene_726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTATTATTATACATAAGT	11	False	NA	NA	False	NA	NA	NA	97836371	97836574	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97836400_97836600
ES_00010975	chr11	+	736	7	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	14196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6015.48458609575	1768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCCTGTATCTCAGACT	NA	False	NA	NA	False	NA	NA	NA	97917782	97935514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921301_97935478
ES_00010976	chr11	+	8208	14	NNC	ENSMUSG00000003119.15	novel	5143	14	NA	NA	-295	1977	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	29.0500486306613	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCTGCATTGCATTTA	NA	False	NA	NA	False	ATTAAA	-21	NA	98093589	98144367	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_98095237_98101189_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140508
ES_00010979	chr11	+	3337	10	NNC	ENSMUSG00000037992.17	novel	3384	10	NA	NA	-1785	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	88.7269357963097	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGCCTCTCTGCCT	NA	False	NA	14	True	AATAAA	-19	NA	98826738	98865768	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_98826806_98828502_98828706_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ES_00010980	chr11	+	1813	8	NNC	ENSMUSG00000037992.17	novel	2380	9	NA	NA	4418	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	85.0267664938998	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	NA	False	NA	6	True	NA	NA	NA	98855655	98864988	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_98855733_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ES_00010981	chr11	+	323	1	ISM	ENSMUSG00000017493.13	ENSMUST00000017637.13	3831	4	12701	125	6634	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	1535	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTTTTTGAGACAAG	329	False	NA	NA	False	NA	NA	NA	98944770	98945093	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_98944800_98945100
ES_00010982	chr11	+	1504	2	Genic_Genomic	ENSMUSG00000086688.5	novel	948	1	NA	NA	-125	942	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGAAAAATATTCAACACC	NA	False	NA	NA	False	AATAAA	-23	NA	99822862	99824877	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_99824159_99824669
ES_00010983	chr11	+	383	2	FSM	ENSMUSG00000035530.14	ENSMUST00000132618.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	12768	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTGTAGTCTTGAAGT	4956	False	NA	-1	True	AATAAA	-13	NA	100211709	100212359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100211876_100212142
ES_00010984	chr11	+	252	1	ISM	ENSMUSG00000006784.15	ENSMUST00000132143.2	4340	10	21947	1913	18094	-1913	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGCTAACTCCTAAGTGT	NA	False	NA	NA	False	NA	NA	NA	100458466	100458718	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100458500_100458700
ES_00010985	chr11	+	885	1	FSM	ENSMUSG00000017832.3	ENSMUST00000017976.3	652	1	0	-233	0	231	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGGACAGTGTTGAAC	NA	False	NA	NA	False	NA	NA	NA	100604747	100605632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_100604700_100605600
ES_00010986	chr11	+	1727	5	NNC	ENSMUSG00000004043.15	novel	3888	20	NA	NA	1718	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	11.8400802362146	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTCTGCTTCCTGGT	NA	False	NA	11	True	AATAAA	-28	NA	100771562	100775992	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_100771644_100771855_100772012_100772563_100772616_100772887_100772993_100774659
ES_00010988	chr11	+	922	4	ISM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	632	7	632	-7	3prime_fragment	FALSE	canonical	2	5	junction_1	8.04155872120988	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTATCATGTGGAGGGG	-11	True	NA	NA	False	NA	NA	NA	100969868	100971346	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_100969935_100970014_100970109_100970485_100970661_100970759
ES_00010989	chr11	+	1366	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3575	False	NA	25	True	ATTAAA	-16	NA	100973454	100977445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ES_00010991	chr11	+	1677	10	NIC	ENSMUSG00000045007.10	novel	1754	11	NA	NA	-34	2	combination_of_known_splicesites	TRUE	canonical	1	1	junction_1	95.0451484659453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTTTGTTTGTGACTCT	1617	False	NA	NA	False	AATAAA	-24	NA	101046698	101052615	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_101046995_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
ES_00010994	chr11	+	972	4	NNC	ENSMUSG00000078651.9	novel	2543	4	NA	NA	2946	15	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	9.46337971105226	97	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTGTTCCTGAAT	NA	False	NA	NA	False	NA	NA	NA	101218858	101220543	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_101218894_101219169_101219456_101219647_101219778_101220022
ES_00010996	chr11	+	507	1	Intergenic	novelGene_742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAGAGCGAGCTCA	NA	False	NA	NA	False	NA	NA	NA	101511885	101512392	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_101511900_101512400
ES_00010997	chr11	+	741	1	FSM	ENSMUSG00000082171.2	ENSMUST00000120378.2	399	1	-78	-264	-78	264	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTTGGTGTCTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	101830248	101830989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_101830200_101831000
ES_00010999	chr11	+	1790	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107103.8	1822	11	32	0	32	0	multi-exon	FALSE	canonical	3	27	junction_2	76.5477628673758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7441	False	NA	11	True	NA	NA	NA	102284260	102292580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_102284609_102288396_102288513_102288925_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
ES_00011002	chr11	+	5245	26	NIC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	35	0	intron_retention	FALSE	canonical	3	16	junction_1	5.06754378372797	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTCTCTCCTCTCTCT	NA	False	NA	32	True	ATTAAA	-43	NA	102652299	102671088	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662562_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ES_00011004	chr11	+	2090	10	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	1	0	intron_retention	FALSE	canonical	2	12	junction_9	44.8688073893569	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992552	103003026	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002364
ES_00011005	chr11	+	1725	10	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-6	0	intron_retention	FALSE	canonical	2	12	junction_9	48.8621138801782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102993893	103003023	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002364
ES_00011006	chr11	+	229	2	Antisense	novelGene_ENSMUSG00000078632.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATCAAGCAATGGTACAT	NA	False	NA	NA	False	NA	NA	NA	103297125	103363649	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_103297178_103363472
ES_00011007	chr11	+	213	2	FSM	ENSMUSG00000110636.2	ENSMUST00000212331.2	228	2	-5	20	-5	-20	multi-exon	FALSE	canonical	2	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCTTGGAGATTGACTT	NA	False	NA	NA	False	TATAAA	-15	NA	103312556	103312868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_103312639_103312737
ES_00011009	chr11	+	1392	9	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	6	-13	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	219.953652788491	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACATATTTAAGGGAA	NA	False	NA	-8	True	NA	NA	NA	104122315	104219248	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00011010	chr11	+	5231	9	NIC	ENSMUSG00000018411.18	novel	2202	13	NA	NA	7309	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	225.910345878625	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	NA	False	NA	NA	False	AATAAA	-19	NA	104180515	104222916	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_104180821_104185684_104185751_104193186_104193237_104196138_104196236_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00011011	chr11	+	965	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8361	-13	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	201.516128386787	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACATATTTAAGGGAA	9495	False	NA	-8	True	NA	NA	NA	104200497	104219248	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_104200551_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ES_00011012	chr11	+	1218	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8211	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	222.439744650096	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9645	False	NA	5	True	AATAAA	-9	NA	104200647	104219261	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_104200848_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
ES_00011013	chr11	+	5720	15	FSM	ENSMUSG00000020689.5	ENSMUST00000021028.5	5784	15	63	1	63	-1	multi-exon	TRUE	canonical	2	6	junction_5	3.08716896928204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCCTGAGACTACCCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	104498888	104561301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_104498991_104514236_104514323_104522999_104523196_104524223_104524477_104527877_104528041_104528648_104528811_104531117_104531214_104531826_104531917_104533009_104533145_104534401_104534832_104549548_104549772_104550861_104550963_104553154_104553275_104556291_104556459_104557905
ES_00011015	chr11	+	1659	10	ISM	ENSMUSG00000053580.17	ENSMUST00000100330.10	11855	26	-115	88643	-110	63764	5prime_fragment	FALSE	canonical	2	4	junction_4	5.3495124965381	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACTCATCTATTACCA	NA	False	NA	NA	False	NA	NA	NA	105480701	105731487	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_105481076_105515860_105515951_105564245_105564318_105604207_105604280_105667631_105667781_105670764_105670952_105689386_105689651_105701297_105701424_105725774_105726057_105731444
ES_00011016	chr11	+	3811	12	FSM	ENSMUSG00000053580.17	ENSMUST00000146162.8	3811	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	4.31411291552897	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTAGGACACGTGTGATG	2486	False	NA	NA	False	AAAAAG	-31	NA	105787304	105814941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_105787531_105790509_105790696_105792885_105792980_105799820_105799955_105801028_105801153_105803737_105803914_105804182_105804316_105804866_105804897_105805717_105805810_105807739_105807887_105810776_105810878_105812573
ES_00011017	chr11	+	201	2	Antisense	novelGene_ENSMUSG00000020715.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTATAGATACCAGGTA	NA	False	NA	NA	False	NA	NA	NA	106333339	106344984	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_+_106333420_106344863
ES_00011018	chr11	+	390	1	FSM	ENSMUSG00000065126.3	ENSMUST00000083192.3	70	1	-140	-180	-140	180	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGCTGCCTTTGAGCCCC	4449	False	NA	55	True	AATAAA	-45	NA	106391678	106392068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_106391700_106392100
ES_00011019	chr11	+	458	1	Intergenic	novelGene_765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCTGGTCTTAATGAG	NA	False	NA	NA	False	NA	NA	NA	106906350	106906808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106906400_106906800
ES_00011020	chr11	+	297	1	Intergenic	novelGene_767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCTGTCTCGAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	106910776	106911073	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_106910800_106911100
ES_00011021	chr11	+	6381	33	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-1006	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_16	42.866617256322	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	9412	False	NA	9	True	AATAAA	-17	NA	107437749	107577769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_107437878_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ES_00011022	chr11	+	6265	32	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-947	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_15	41.902244891546	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	9471	False	NA	9	True	AATAAA	-17	NA	107437808	107577769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ES_00011024	chr11	+	1776	8	NNC	ENSMUSG00000020610.18	novel	2997	8	NA	NA	-56	-115	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_5	52.6001474351934	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTTCCTTCCCGTA	NA	False	NA	-96	True	NA	NA	NA	109316989	109327700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320876_109324715_109324880_109325405_109325583_109327388
ES_00011025	chr11	+	1869	12	FSM	ENSMUSG00000020623.12	ENSMUST00000146084.8	1869	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	29.7790763528648	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110290084	110404467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381640_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ES_00011026	chr11	+	515	3	FSM	ENSMUSG00000034714.10	ENSMUST00000141111.2	695	3	0	180	0	-180	multi-exon	FALSE	canonical	3	191	junction_1	12.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATCTCAGGAGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	114566341	114581249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114566499_114577219_114577393_114581064
ES_00011027	chr11	+	1809	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	12	3521	4	0	5prime_fragment	FALSE	canonical	3	20	junction_1	8.2192186706253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGCTTTGGGCTTGTG	940	False	NA	NA	False	AATAAA	-19	NA	114742679	114759922	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321
ES_00011028	chr11	+	2030	4	FSM	ENSMUSG00000051043.17	ENSMUST00000021071.14	2200	4	170	0	140	0	multi-exon	FALSE	canonical	2	8	junction_1	13.5973853695808	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGCTTTGGGCTTGTG	1106	False	NA	NA	False	AATAAA	-19	NA	114742845	114759922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_114743100_114754292_114755373_114757450_114757546_114759321
ES_00011030	chr11	+	2198	9	FSM	ENSMUSG00000020732.14	ENSMUST00000021076.6	2210	9	10	2	10	-2	multi-exon	TRUE	canonical	1	1	junction_2	1.36358901432946	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGACCGGTTTTTCCC	NA	False	NA	NA	False	ATTAAA	-21	NA	115044992	115053060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115045118_115047752_115047864_115048776_115048819_115049330_115049398_115049484_115049538_115050501_115050568_115051124_115051182_115051263_115051341_115051460
ES_00011033	chr11	+	415	1	Intergenic	novelGene_791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCACTTTAGATAGTTCTA	9959	False	NA	NA	False	AAAACA	-43	NA	115430110	115430525	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115430100_115430500
ES_00011036	chr11	+	825	4	FSM	ENSMUSG00000020781.15	ENSMUST00000136343.2	825	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	103.39568011608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGGAGGTTACCGGTG	6906	False	NA	NA	False	NA	NA	NA	115706523	115712525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115706623_115707878_115707932_115711204_115711834_115712481
ES_00011038	chr11	+	3526	26	NNC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-3	-20	at_least_one_novel_splicesite	FALSE	canonical	3	107	junction_23	160.438568929045	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTTTCGTCTTCACTTT	6806	False	NA	18	True	AATAAA	-3	NA	115714880	115746584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745885_115745932_115746017_115746080_115746291
ES_00011041	chr11	+	1785	15	FSM	ENSMUSG00000034427.18	ENSMUST00000167507.3	1785	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.99438460183238	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTGTCTCCACCGGAG	2170	False	NA	NA	False	AGTAAA	-25	NA	115778426	115783429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115778534_115778692_115778769_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
ES_00011042	chr11	+	5919	40	FSM	ENSMUSG00000020758.16	ENSMUST00000106460.9	5919	40	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	6.17634775023937	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTCTGTCCGTTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	115865804	115899238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115865981_115868611_115868704_115869901_115869985_115870186_115870289_115870439_115870645_115871500_115871598_115871766_115871939_115873526_115873791_115874084_115874175_115874468_115874592_115874862_115875028_115875847_115875925_115877442_115877646_115879285_115879390_115879482_115879582_115879715_115879846_115880544_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115896722_115896882_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ES_00011043	chr11	+	5584	38	FSM	ENSMUSG00000020758.16	ENSMUST00000068981.13	5584	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	6.15195931066818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTCTGTCCGTTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	115868611	115899238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_115868704_115869901_115869985_115870186_115870289_115870439_115870645_115871500_115871598_115871766_115871939_115873526_115873791_115874084_115874175_115874468_115874592_115874862_115875028_115875847_115875925_115877442_115877646_115879285_115879390_115879482_115879582_115879715_115879846_115880544_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ES_00011045	chr11	+	915	7	FSM	ENSMUSG00000092300.8	ENSMUST00000174177.2	915	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.49443825784929	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACACGTATGTGGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	116106828	116110602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116106945_116107236_116107315_116107385_116107507_116107596_116107768_116107857_116107960_116108919_116109124_116110479
ES_00011046	chr11	+	660	5	FSM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	139	0	91	0	multi-exon	FALSE	canonical	1	1	junction_1	3.83242742918897	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTGTAAAGACTGCTTT	NA	False	NA	NA	False	AATAAA	-37	NA	116548072	116559213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116548134_116548363_116548433_116550123_116550203_116550558_116550654_116558857
ES_00011047	chr11	+	670	5	FSM	ENSMUSG00000020812.19	ENSMUST00000142834.8	661	5	-9	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.9915535720125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTAGCATTGTGGG	NA	False	NA	0	True	AATAAA	-13	NA	116562485	116566621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116562583_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ES_00011048	chr11	+	1092	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239180.2	1083	5	-9	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	27.427176303805	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGTAGCATTGTGGGTA	NA	False	NA	2	True	AATAAA	-15	NA	116562485	116566623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116565202_116566333
ES_00011051	chr11	+	4250	18	FSM	ENSMUSG00000043857.17	ENSMUST00000103027.10	4258	18	8	0	8	0	multi-exon	FALSE	canonical	0	0	junction_11	10.2666861396781	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGGATTTTTTGTCTT	1816	False	NA	NA	False	AATAAA	-32	NA	116809696	116877774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864258_116865017_116865024_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ES_00011052	chr11	+	800	1	FSM	ENSMUSG00002076896.1	ENSMUST00020182044.1	193	1	-607	0	-607	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCTGAAGCTGTGGGG	728	False	NA	25	True	NA	NA	NA	116967461	116968261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_116967500_116968300
ES_00011053	chr11	+	200	1	Intergenic	novelGene_800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCAGCAGATCTACCCTAC	NA	False	NA	NA	False	NA	NA	NA	116977619	116977819	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_116977600_116977800
ES_00011054	chr11	+	1061	3	FSM	ENSMUSG00000020823.17	ENSMUST00000146585.2	1047	3	-14	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	191.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGATTGAAGGAATAGT	NA	False	NA	NA	False	AATAAA	-15	NA	117006063	117019589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117006178_117007985_117008079_117018735
ES_00011055	chr11	+	361	1	Intergenic	novelGene_803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTCTCGCTGGCCTTA	NA	False	NA	NA	False	NA	NA	NA	117521684	117522045	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_117521700_117522000
ES_00011056	chr11	+	8700	21	NIC	ENSMUSG00000025571.14	novel	8847	22	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_10	19.6913051878234	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGTGTCTTTCATCTGT	NA	False	NA	18	True	AATAAA	-29	NA	117545611	117654265	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_+_117546158_117591550_117591651_117593204_117593227_117604951_117605279_117611775_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
ES_00011057	chr11	+	610	2	FSM	ENSMUSG00000048277.16	ENSMUST00000176936.2	330	2	-280	0	-280	0	multi-exon	FALSE	canonical	3	622	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCGCCCTTCACCCAGAA	NA	False	NA	NA	False	NA	NA	NA	117703536	117704238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_117704012_117704103
ES_00011058	chr11	+	3826	14	FSM	ENSMUSG00000033857.13	ENSMUST00000171769.8	3807	14	-19	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.6532225814911	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACGGCCCCCAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	118367766	118379913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_118367931_118369708_118369780_118369915_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
ES_00011059	chr11	+	13132	48	NNC	ENSMUSG00000070327.15	novel	16716	67	NA	NA	37185	-5	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	38.8389788013572	107	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCACAGCTAAGAGTCCT	4048	False	NA	6	True	AATAAA	-6	NA	119321110	119378236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_+_119321576_119322413_119322580_119324236_119324455_119325513_119325655_119325761_119325930_119326736_119327887_119328443_119328638_119328798_119328955_119331014_119334618_119336455_119336593_119336935_119337032_119338060_119338180_119339579_119339700_119340070_119340181_119340549_119340701_119340918_119341058_119343336_119343529_119345265_119345412_119346978_119347134_119349093_119349319_119349558_119349741_119350766_119350888_119352716_119352818_119352926_119353110_119354129_119354300_119354393_119354494_119355830_119355943_119356711_119356923_119357049_119357241_119358052_119358176_119358795_119358907_119359643_119359887_119360957_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ES_00011062	chr11	+	1496	4	FSM	ENSMUSG00000039640.8	ENSMUST00000137619.2	768	4	-414	-314	0	-294	multi-exon	FALSE	canonical	3	1076	junction_1	37.0075067460043	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGGGGCCTGCAGCCA	8955	False	NA	42	True	TATAAA	-34	NA	120375438	120379597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_+_120376256_120376481_120376569_120378922_120379061_120379143
ES_00011064	chr11	+	1610	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	78027	multi-exon	FALSE	non_canonical	0	0	junction_2	980	418	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAACAACAACAACAAAAACC	NA	False	NA	NA	False	NA	NA	NA	120653617	120733272	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_+_120653817_120653849_120655216_120733227
ES_00011069	chr11	-	1984	15	ISM	ENSMUSG00000023764.19	ENSMUST00000081318.13	3969	33	49615	37	-1414	0	3prime_fragment	FALSE	canonical	3	8	junction_14	17.9609837919728	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTCCTACTTTTCATA	7492	False	NA	-1	True	AATGAA	-16	NA	3093792	3081886	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3093694
ES_00011070	chr11	-	415	2	ISM	ENSMUSG00000023764.19	ENSMUST00000126746.9	2596	21	32150	61	3560	-59	3prime_fragment	FALSE	canonical	3	56	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTTGTTTTGTTT	NA	False	NA	-63	True	NA	NA	NA	3082447	3081948	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_3082132_3082215
ES_00011071	chr11	-	1927	18	ISM	ENSMUSG00000023764.19	ENSMUST00000066391.14	3898	32	39	12376	0	-37	5prime_fragment	FALSE	canonical	2	8	junction_1	33.6517890545866	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCTCTTGAGTCGGG	8018	False	NA	NA	False	NA	NA	NA	3143424	3094256	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ES_00011073	chr11	-	716	3	FSM	ENSMUSG00000020451.18	ENSMUST00000148771.2	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	31	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCCTACCAGCAGTCT	NA	False	NA	NA	False	NA	NA	NA	3302817	3300391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3300449_3300641_3300774_3302290
ES_00011075	chr11	-	3367	22	FSM	ENSMUSG00000020439.18	ENSMUST00000170588.8	3386	22	19	0	19	0	multi-exon	FALSE	canonical	2	9	junction_21	27.3941583060523	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8156	False	NA	-6	True	GATAAA	-17	NA	3489273	3467522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487554_3487606_3489111
ES_00011076	chr11	-	5135	4	NNC	ENSMUSG00000056579.19	novel	5112	3	NA	NA	0	24835	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1146.47556547108	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCCAGGCCTCAGGTCA	NA	False	NA	NA	False	NA	NA	NA	3597530	3564949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3564977_3589797_3593180_3594771_3595524_3596556
ES_00011077	chr11	-	5145	4	NNC	ENSMUSG00000056579.19	novel	4720	4	NA	NA	0	24835	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1146.47556547108	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCCAGGCCTCAGGTCA	NA	False	NA	NA	False	NA	NA	NA	3597536	3564949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_3564980_3589796_3593180_3594771_3595524_3596556
ES_00011078	chr11	-	245	2	Intergenic	novelGene_437	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGGTGGACTGCGTTGT	1893	False	NA	NA	False	NA	NA	NA	3893260	3869996	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_3870023_3893041
ES_00011079	chr11	-	1915	12	FSM	ENSMUSG00000020419.12	ENSMUST00000020689.10	1915	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	65.3129782200057	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTTGATAATTTATGT	NA	False	NA	-20	True	AATAAA	-11	NA	4391103	4295813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4375505_4375627_4377243_4377386_4385001_4385090_4391015
ES_00011080	chr11	-	1093	1	Intergenic	novelGene_439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATGTTAAAAGTACAACC	7072	False	NA	NA	False	NA	NA	NA	4339845	4338752	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_4338800_4339800
ES_00011081	chr11	-	538	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-58	37	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_5	60.0066662963374	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACATTTTATTTTGTAG	NA	False	NA	NA	False	ATTAAA	-27	NA	4391163	4374210	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
ES_00011082	chr11	-	5532	19	NNC	ENSMUSG00000034354.18	novel	5534	18	NA	NA	25	-175	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_18	68.2081961694587	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTTTTTTATTAATATTT	NA	False	NA	NA	False	AATAAA	-35	NA	4544790	4431064	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4496188_4496269_4544602
ES_00011083	chr11	-	389	2	FSM	ENSMUSG00000059534.9	ENSMUST00000130236.2	389	2	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGAGACCGGCTTTTGC	NA	False	NA	-15	True	AATAAA	-10	NA	4654053	4651981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_4652221_4653903
ES_00011084	chr11	-	2366	17	NIC	ENSMUSG00000009073.17	novel	1795	16	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	88.7967306549064	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCCCAGGCAATACAGGA	9036	False	NA	NA	False	ATTAAA	-23	NA	4799345	4729813	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_4730035_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ES_00011086	chr11	-	233	2	Antisense	novelGene_ENSMUSG00000098296.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGGGAAAAGAGATGACAA	NA	False	NA	NA	False	NA	NA	NA	4857187	4841168	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_4841201_4856986
ES_00011087	chr11	-	2923	5	NIC	ENSMUSG00000034201.14	novel	2530	6	NA	NA	-2	4	intron_retention	FALSE	canonical	3	85	junction_4	39.0600499231632	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTTGCATTTGTTTTT	NA	False	NA	-5	True	AAGAAA	-20	NA	5015329	5010376	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
ES_00011089	chr11	-	2024	1	Genic_Genomic	ENSMUSG00000041961.15	novel	NA	NA	NA	NA	103486	93	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTAACAGATTCCAAGTC	1547	False	NA	90	True	NA	NA	NA	5228254	5226230	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_5226200_5228300
ES_00011090	chr11	-	973	1	FSM	ENSMUSG00000085232.4	ENSMUST00000145746.2	255	1	-21	-697	-21	697	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATCTCCCATGTGAGT	NA	False	NA	NA	False	ATTAAA	-12	NA	5445467	5444494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_5444500_5445500
ES_00011092	chr11	-	202	1	Intergenic	novelGene_448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTATTAATAACTTCAAAA	7251	False	NA	NA	False	AAAAAG	-4	NA	5700479	5700277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_5700300_5700500
ES_00011093	chr11	-	1629	12	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	36	29456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	851.222125792097	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCACAAGGAAGTCACAAGT	9541	False	NA	NA	False	NA	NA	NA	5828256	5792723	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_5792751_5822187_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ES_00011094	chr11	-	1629	12	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	36	29456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	851.222125792097	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCACAAGGAAGTCACAAGT	9541	False	NA	NA	False	NA	NA	NA	5828256	5792723	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_5792752_5822188_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ES_00011099	chr11	-	7609	30	NNC	ENSMUSG00000020422.15	novel	7897	31	NA	NA	19487	0	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_29	13.2277228427735	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATTTTTTTAAGTCT	3579	False	NA	NA	False	AATAAA	-24	NA	8555400	8381651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8555105
ES_00011100	chr11	-	7977	32	NNC	ENSMUSG00000020422.15	novel	7897	31	NA	NA	-125	0	at_least_one_novel_splicesite	TRUE	canonical	1	17	junction_1	15.4454496429277	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATTTTTTTAAGTCT	4950	False	NA	NA	False	AATAAA	-24	NA	8575012	8381651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8382706_8382750_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8574416
ES_00011101	chr11	-	1534	1	FSM	ENSMUSG00000082095.2	ENSMUST00000119652.2	1074	1	-405	-55	-405	55	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTACTTTCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	8835701	8834167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_8834200_8835700
ES_00011102	chr11	-	720	6	NNC	ENSMUSG00000020413.12	novel	2114	7	NA	NA	12	-1264	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	42.5704122601602	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCTTGATTTTCTTTGT	NA	False	NA	NA	False	AATAAA	-37	NA	8961116	8950002	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_8950177_8955988_8956064_8957493_8957602_8960240_8960418_8960496_8960625_8961058
ES_00011103	chr11	-	330	1	FSM	ENSMUSG00000084045.2	ENSMUST00000118697.2	313	1	13	-30	13	30	mono-exon	FALSE	NA	NA	NA	NA	NA	574	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	AATAAA	-12	NA	10327069	10326739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_10326700_10327100
ES_00011104	chr11	-	2186	16	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1651	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	30.1922727420996	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	3987	False	NA	-1	True	AATAAA	-21	NA	11832280	11764100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11831367_11831640_11832251
ES_00011108	chr11	-	5302	2	Intergenic	novelGene_477	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGGAAGAAAAAATGTAGCC	NA	False	NA	NA	False	NA	NA	NA	19366102	19359371	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_19362826_19364254
ES_00011110	chr11	-	202	2	Antisense	novelGene_ENSMUSG00000045671.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCATTTTCTTAATAGT	NA	False	NA	NA	False	NA	NA	NA	19969109	19884466	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_19884644_19969084
ES_00011111	chr11	-	3670	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	0	31071	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAGAAATTAAAACTG	1340	False	NA	NA	False	NA	NA	NA	20062909	19981232	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_19981276_20012303_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ES_00011112	chr11	-	959	3	Intergenic	novelGene_480	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	3	junction_2	32	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAACATGTTGTTTTTCT	283	False	NA	NA	False	AATAAA	-19	NA	20089359	20087214	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_20087398_20088488_20088566_20088660
ES_00011113	chr11	-	3359	6	NNC	ENSMUSG00000042363.15	novel	3362	5	NA	NA	0	95347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	129.934752856963	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAGGAAGAAGAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	20781022	20678228	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_20678259_20773574_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ES_00011116	chr11	-	1437	10	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	0	299	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	446.622662287905	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTCAGGACTTTTATTA	NA	False	NA	NA	False	TTTAAA	-43	NA	21521934	21506392	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_21506422_21507241_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ES_00011117	chr11	-	257	1	FSM	ENSMUSG00000083761.2	ENSMUST00000119107.2	749	1	465	27	465	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTGCTCAGGGCAA	NA	False	NA	NA	False	NA	NA	NA	21633591	21633334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_21633300_21633600
ES_00011118	chr11	-	2813	5	FSM	ENSMUSG00000005917.16	ENSMUST00000006071.14	2789	5	-29	5	-29	0	multi-exon	FALSE	canonical	2	4	junction_1	0.433012701892219	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCGTTGCTCTTCTAA	NA	False	NA	NA	False	AATAAA	-20	NA	21951644	21944768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_21947059_21948369_21948522_21949379_21949586_21951121_21951190_21951547
ES_00011119	chr11	-	4712	23	NNC	ENSMUSG00000042302.15	novel	4971	25	NA	NA	-277	3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_22	8.31209414593634	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCTGCAATTTATTTCC	9615	False	NA	0	True	AATAAA	-24	NA	22237072	21955824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006520_22006628_22006782_22006922_22009136_22009262_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096626_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22237016
ES_00011120	chr11	-	4850	24	NNC	ENSMUSG00000042302.15	novel	4971	25	NA	NA	-302	3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_9	7.61552488549959	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCTGCAATTTATTTCC	9590	False	NA	0	True	AATAAA	-24	NA	22237097	21955824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006529_22006628_22006782_22006922_22009136_22009262_22012779_22012888_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096626_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22237002
ES_00011121	chr11	-	2408	1	FSM	ENSMUSG00000082576.2	ENSMUST00000118614.2	437	1	261	-2232	261	2232	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCACTGTTCTGTTACA	NA	False	NA	NA	False	AATAAA	-16	NA	22736986	22734578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_22734600_22737000
ES_00011122	chr11	-	473	2	FSM	ENSMUSG00000051355.19	ENSMUST00000071068.9	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGTAAAAAAGAGAAACC	NA	False	NA	-31	True	AATATA	-10	NA	22932252	22849758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_22850058_22932078
ES_00011125	chr11	-	2510	21	NIC	ENSMUSG00000042208.16	novel	2569	23	NA	NA	-25	-3	combination_of_known_splicesites	TRUE	canonical	0	0	junction_17	34.2640846952023	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATCTTCTGGAATTAAA	NA	False	NA	NA	False	NA	NA	NA	23583664	23514963	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_23515137_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23574935_23575123_23578872_23579032_23581204_23581335_23583492
ES_00011126	chr11	-	4015	21	NIC	ENSMUSG00000042208.16	novel	4128	22	NA	NA	20	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	26.2969104649196	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATGACAAAAATTGTGGA	NA	False	NA	-21	True	AATAAA	-3	NA	23583611	23523793	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_23525518_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
ES_00011127	chr11	-	1882	6	FSM	ENSMUSG00000020273.14	ENSMUST00000145013.2	1882	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	11.8253963992756	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAAATATATTTGTAT	493	False	NA	NA	False	NA	NA	NA	23818470	23815243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358
ES_00011128	chr11	-	4126	4	FSM	ENSMUSG00000032878.17	ENSMUST00000042534.15	5332	4	64	1142	6	318	multi-exon	FALSE	canonical	1	1	junction_1	0.816496580927726	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGGGAAATTTTATAGTA	NA	False	NA	NA	False	ACTAAA	-35	NA	28534260	28336833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_28338949_28384080_28384158_28526390_28527346_28533281
ES_00011129	chr11	-	230	2	Antisense	novelGene_ENSMUSG00000032740.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTCAAAACAATAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	29376548	29354748	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_29354791_29376360
ES_00011130	chr11	-	886	1	FSM	ENSMUSG00000085893.2	ENSMUST00000146791.2	830	1	-12	-44	-12	44	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAGAAAAAAG	NA	False	NA	NA	False	AATAAA	-22	NA	29552625	29551739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_29551700_29552600
ES_00011131	chr11	-	2962	2	FSM	ENSMUSG00000020315.19	ENSMUST00000145315.2	2956	2	0	-6	0	5	multi-exon	FALSE	canonical	3	552	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTAGCCGGTGTTTTTCC	NA	False	NA	-2	True	ATTAAA	-20	NA	30053249	30049389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_30050715_30051612
ES_00011132	chr11	-	8263	35	NIC	ENSMUSG00000020315.19	novel	8238	35	NA	NA	321	5	combination_of_known_junctions	FALSE	canonical	3	341	junction_32	94.310427564532	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTAGCCGGTGTTTTTCC	2141	False	NA	-2	True	ATTAAA	-20	NA	30147936	30049389	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
ES_00011136	chr11	-	1268	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	8041.81214963394	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110438_33110827_33110922_33111105_33111221_33111547_33111628_33112921
ES_00011137	chr11	-	5177	23	NNC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	29040	37494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.4355729606863	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTCATGGATTAGC	NA	False	NA	NA	False	NA	NA	NA	33434054	33124300	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33124337_33161802_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005
ES_00011138	chr11	-	5799	30	NNC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	-710	37494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.5393686262791	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTCATGGATTAGC	NA	False	NA	NA	False	NA	NA	NA	33464456	33124300	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_33124337_33161802_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ES_00011139	chr11	-	251	1	FSM	ENSMUSG00000098456.3	ENSMUST00000184486.2	980	1	949	-220	949	220	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGGCAACACAAATTGGAC	NA	False	NA	NA	False	AATAAA	-30	NA	33225788	33225537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33225500_33225800
ES_00011140	chr11	-	3191	10	FSM	ENSMUSG00000020159.9	ENSMUST00000020366.8	3280	10	10	79	10	-79	multi-exon	FALSE	canonical	0	0	junction_2	0.831479419283098	1033	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTCACTGAGGCCTCAT	8495	False	NA	NA	False	AATAAA	-14	NA	33528947	33500859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_33502843_33504293_33504482_33504967_33505121_33506929_33507068_33513865_33513949_33517212_33517431_33518066_33518135_33522372_33522492_33523317_33523417_33528805
ES_00011141	chr11	-	2155	17	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-77623	88940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	314.843810483865	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAAGTACA	NA	False	NA	NA	False	NA	NA	NA	35802956	35610267	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_35610301_35699207_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263_35725329_35802938
ES_00011143	chr11	-	1861	8	NNC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	0	1406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.418957797774	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAACATCTTGACCCAA	NA	False	NA	NA	False	NA	NA	NA	40585814	40568734	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_40568762_40570143_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
ES_00011146	chr11	-	2740	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	1	-1221	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	161.211267175591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAAGGGTTTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	40624217	40593442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40599090_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ES_00011147	chr11	-	2743	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	0	-1221	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	161.211267175591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAAGGGTTTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	40624218	40593442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ES_00011148	chr11	-	4166	10	FSM	ENSMUSG00000010803.14	ENSMUST00000020707.12	4688	10	493	29	23	-29	multi-exon	FALSE	canonical	1	1	junction_3	2.82842712474619	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAAGCTTACATTATTC	NA	False	NA	NA	False	NA	NA	NA	42073264	42021794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_42024618_42026234_42026438_42031075_42031229_42037916_42038061_42044160_42044244_42045635_42045857_42053380_42053449_42066728_42066839_42070386_42070476_42072992
ES_00011149	chr11	-	245	2	Antisense	novelGene_ENSMUSG00000040489.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAATATTAGCTGGGCAT	NA	False	NA	NA	False	NA	NA	NA	45911885	45884046	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_45884072_45911665
ES_00011150	chr11	-	514	1	FSM	ENSMUSG00000081078.2	ENSMUST00000117362.2	624	1	27	83	27	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGCAAGAAAAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	46134994	46134480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_46134500_46135000
ES_00011151	chr11	-	1234	8	FSM	ENSMUSG00000020354.16	ENSMUST00000077221.6	1617	8	96	287	96	-287	multi-exon	FALSE	canonical	0	0	junction_1	1.35526185435788	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATATCCTCTGTATAAA	NA	False	NA	NA	False	NA	NA	NA	47270253	46869898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_46870264_46871637_46871762_46973605_46973679_47016361_47016482_47023424_47023513_47085857_47085960_47246011_47246201_47270080
ES_00011153	chr11	-	227	1	ISM	ENSMUSG00000069890.4	ENSMUST00000093146.4	1821	2	393	1202	393	-1202	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTGGCCTAGAGAAGGAA	NA	False	NA	NA	False	AAAACA	-24	NA	49478896	49478669	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_49478700_49478900
ES_00011154	chr11	-	3807	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	0	43750	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1071.55122447164	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAGGAAGGAAGGAAAA	8136	False	NA	NA	False	NA	NA	NA	50216500	50141037	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50141066_50185293_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ES_00011155	chr11	-	2061	6	FSM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	0	-2	0	2	multi-exon	FALSE	canonical	2	3	junction_5	5.56417109729742	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTGTTTCTTTTTTTAA	NA	False	NA	1	True	ATTAAA	-28	NA	50778270	50763544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778192
ES_00011156	chr11	-	3024	6	NNC	ENSMUSG00000049321.18	novel	501	6	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	22.9120055865915	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACGAGTTGCCTTGGTCA	NA	False	NA	-7	True	NA	NA	NA	50806976	50789545	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801576_50801704_50803106_50803232_50806935
ES_00011157	chr11	-	1595	6	NNC	ENSMUSG00000086646.8	novel	937	5	NA	NA	-18	3561	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	6.96850055607374	865	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACACACACACATATGAGA	NA	False	NA	NA	False	NA	NA	NA	51111263	51077098	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_51077852_51080756_51081139_51089402_51089544_51104871_51105042_51110284_51110381_51111210
ES_00011158	chr11	-	2013	7	FSM	ENSMUSG00000020358.18	ENSMUST00000101249.9	2013	7	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_1	519.070135488024	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTAAATGTGGGATG	NA	False	NA	-17	True	AATAAA	-22	NA	51497674	51491695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ES_00011159	chr11	-	764	2	FSM	ENSMUSG00000007777.10	ENSMUST00000109098.2	892	2	128	0	-93	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5091	False	NA	-12	True	ATTAAA	-14	NA	51579573	51576212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51576920_51579516
ES_00011160	chr11	-	342	1	FSM	ENSMUSG00000119011.1	ENSMUST00000240094.1	144	1	-197	-1	-197	1	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTTTTTTAGATTGT	9028	False	NA	NA	False	NA	NA	NA	51628946	51628604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_51628600_51628900
ES_00011161	chr11	-	1910	2	Genic_Genomic	ENSMUSG00000081297.2	novel	596	1	NA	NA	-1132	1196	multi-exon	FALSE	canonical	3	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTGTAGTTTCTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	52371062	52368138	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_52368313_52369326
ES_00011162	chr11	-	313	1	Intergenic	novelGene_547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTACACACCTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	53233199	53232886	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_53232900_53233200
ES_00011163	chr11	-	1742	1	FSM	ENSMUSG00000091191.4	ENSMUST00000238260.3	3144	1	1411	-9	1403	9	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGCGCCGCGAAGAAATCT	NA	False	NA	NA	False	NA	NA	NA	53662610	53660868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53660900_53662600
ES_00011164	chr11	-	3461	10	FSM	ENSMUSG00000063652.11	ENSMUST00000076493.11	3461	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.87247772737252	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAATAGCAACTGACTA	NA	False	NA	NA	False	AATAAA	-19	NA	53871158	53840790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_53842182_53842532_53842669_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851264_53860325_53860430_53870290
ES_00011165	chr11	-	2854	18	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_17	69.5423995036102	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3659	False	NA	-5	True	CATAAA	-18	NA	54846871	54801612	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846673
ES_00011166	chr11	-	2551	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3617	False	NA	-5	True	CATAAA	-18	NA	54846913	54801612	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
ES_00011167	chr11	-	2642	17	FSM	ENSMUSG00000020400.18	ENSMUST00000108886.8	2642	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	76.2520491527933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6841	False	NA	-5	True	CATAAA	-18	NA	54853742	54801612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
ES_00011169	chr11	-	1150	6	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	9	-1675	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	246.809238076698	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAGTAATTTCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	57409419	57399875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_57400058_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57408930
ES_00011170	chr11	-	792	2	Intergenic	novelGene_556	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTCGCCTCTCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	57446399	57433716	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_57434133_57446023
ES_00011171	chr11	-	497	2	Intergenic	novelGene_561	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCTGAGTCAGAACGTG	NA	False	NA	NA	False	NA	NA	NA	57451297	57445598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_57446024_57451225
ES_00011172	chr11	-	563	3	FSM	ENSMUSG00000087165.8	ENSMUST00000132378.2	543	3	0	-20	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692240	57686324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_57686621_57687137_57687224_57692059
ES_00011173	chr11	-	255	1	FSM	ENSMUSG00000081223.2	ENSMUST00000117585.2	670	1	276	139	276	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTCGCTTCTTCGGGA	NA	False	NA	NA	False	NA	NA	NA	57988323	57988068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_57988100_57988300
ES_00011174	chr11	-	3177	18	FSM	ENSMUSG00000020538.16	ENSMUST00000144942.2	3177	18	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_17	64.3975541670564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGAGGAGGAGGGCAGG	5243	False	NA	NA	False	NA	NA	NA	60101291	60091288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
ES_00011177	chr11	-	4936	14	FSM	ENSMUSG00000000538.19	ENSMUST00000095254.12	4940	14	3	1	3	0	multi-exon	FALSE	canonical	0	0	junction_2	13.4441646125811	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTGTGATGTCTGA	NA	False	NA	-1	True	AATAAA	-14	NA	60243728	60117540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_60121068_60121926_60121964_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
ES_00011178	chr11	-	356	1	Genic_Genomic	ENSMUSG00000020534.15	novel	NA	NA	NA	NA	-148	-7166	mono-exon	FALSE	NA	NA	NA	NA	NA	1925	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCTACAATCAGCAATAC	NA	False	NA	NA	False	NA	NA	NA	60702692	60702336	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_60702300_60702700
ES_00011179	chr11	-	1177	3	NNC	ENSMUSG00000043284.13	novel	1511	3	NA	NA	0	11448	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	337.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTTAAAATATTCTGA	7834	False	NA	NA	False	NA	NA	NA	60769613	60743829	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_60744035_60755277_60756175_60769538
ES_00011180	chr11	-	1889	4	FSM	ENSMUSG00000010025.20	ENSMUST00000208086.2	1886	4	0	-3	0	3	multi-exon	FALSE	canonical	2	3	junction_2	43.667938912764	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTAATTTTGACCT	NA	False	NA	NA	False	AATAAA	-17	NA	61141836	61135675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_61137148_61138754_61138868_61139687_61139924_61141768
ES_00011181	chr11	-	1719	2	Intergenic	novelGene_572	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCAGTTTCATCGCTTCTT	7987	False	NA	NA	False	NA	NA	NA	61288584	61281953	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_61283397_61288308
ES_00011182	chr11	-	3047	7	NIC	ENSMUSG00000001034.18	novel	3069	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	31	junction_5	75.7840499196382	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	-4	True	AATACA	-14	NA	61385014	61379642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384331_61384781_61384905
ES_00011183	chr11	-	3033	7	NIC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	-164	-5	intron_retention	FALSE	canonical	1	1	junction_6	86.7558835660921	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	-4	True	AATACA	-14	NA	61385396	61379642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61385160
ES_00011185	chr11	-	8503	49	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	35808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.213706396232	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAAAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	62348149	62171443	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62171471_62207830_62208857_62210191_62210369_62211821_62212044_62212217_62212269_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011186	chr11	-	8870	47	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	17	-54	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_4	103.557270256908	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGCACTGTAGGATCAC	NA	False	NA	NA	False	TTTAAA	-19	NA	62348132	62207569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212269_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011187	chr11	-	8597	47	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	5	-54	combination_of_known_junctions	FALSE	canonical	3	49	junction_18	102.529015211805	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGCACTGTAGGATCAC	NA	False	NA	NA	False	TTTAAA	-19	NA	62348144	62207569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011188	chr11	-	8735	48	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	5	-54	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_4	101.394790676242	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGCACTGTAGGATCAC	NA	False	NA	NA	False	TTTAAA	-19	NA	62348144	62207569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212269_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011189	chr11	-	8480	47	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	5	-54	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	115.194493212743	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGCACTGTAGGATCAC	NA	False	NA	NA	False	TTTAAA	-19	NA	62348144	62207569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62208857_62210191_62210252_62211821_62212044_62212217_62212269_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011190	chr11	-	8144	48	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	0	-311	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_9	107.399298533494	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTACATCATTTGTGAC	NA	False	NA	-12	True	AATAAA	-23	NA	62348149	62207826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224845_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011191	chr11	-	4060	27	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	32	957	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_8	124.424806788593	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCATGTGCTTAGATTAA	NA	False	NA	NA	False	NA	NA	NA	62348117	62243774	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264278_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ES_00011192	chr11	-	744	2	FSM	ENSMUSG00000018509.9	ENSMUST00000135497.2	744	2	0	0	0	0	multi-exon	FALSE	canonical	3	1542	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTATTACTATGACATATT	NA	False	NA	-17	True	AATAAA	-16	NA	62418722	62415774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62416114_62418317
ES_00011193	chr11	-	244	2	FSM	ENSMUSG00000087120.2	ENSMUST00000142533.2	294	2	50	0	50	0	multi-exon	FALSE	canonical	1	1	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTCCAGCAATTGCCA	NA	False	NA	NA	False	NA	NA	NA	62441817	62440872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62440986_62441686
ES_00011194	chr11	-	3012	5	FSM	ENSMUSG00000005267.14	ENSMUST00000005399.10	3220	5	208	0	208	0	multi-exon	FALSE	canonical	1	1	junction_2	0.82915619758885	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAAGACCTGAAAAG	NA	False	NA	NA	False	AGTAAA	-8	NA	62619711	62604112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_62606203_62615622_62615710_62616073_62616201_62618375_62618480_62619107
ES_00011195	chr11	-	1118	2	NNC	ENSMUSG00000042148.9	novel	2915	7	NA	NA	63134	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	NA	False	NA	-4	True	AATAAA	-14	NA	63907158	63853452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_63854545_63907132
ES_00011196	chr11	-	7757	31	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	-4022	1115	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	135.839386368199	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTCCCAGGTACCT	NA	False	NA	NA	False	AATAAA	-21	NA	68903308	68875407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_68876087_68876227_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228_68899524_68900173_68900275_68903236
ES_00011197	chr11	-	3428	2	ISM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	451	-2916	451	1229	3prime_fragment	FALSE	canonical	3	52	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGTTCCAGGACAGCCA	NA	False	NA	NA	False	NA	NA	NA	69285708	69281521	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_69284695_69285453
ES_00011198	chr11	-	5153	14	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	7242	0	-2218	0	3prime_fragment	FALSE	canonical	2	3	junction_13	6.66617355178255	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCCTTGTGTTTTGATG	NA	False	NA	-3	True	AATAAA	-19	NA	69297259	69289333	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_69290676_69290765_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901_69293108_69294403_69294510_69294615_69294743_69294831_69297000_69297084
ES_00011200	chr11	-	971	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCCCTCCTTGTGAGCA	6816	False	NA	NA	False	AGTAAA	-37	NA	69553413	69547852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
ES_00011204	chr11	-	614	3	FSM	ENSMUSG00000005204.13	ENSMUST00000128355.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	923	junction_1	23.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGGCTCAATGACCAG	9361	False	NA	NA	False	NA	NA	NA	69570021	69568982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69569111_69569447_69569560_69569647
ES_00011205	chr11	-	2200	13	FSM	ENSMUSG00000018752.20	ENSMUST00000180587.8	2235	13	29	6	29	-6	multi-exon	TRUE	canonical	2	2	junction_12	10.9417650414466	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACGATCAGACTGGTATC	5192	False	NA	NA	False	NA	NA	NA	69586895	69573408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69574171_69574679_69574819_69575043_69575163_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586271_69586421
ES_00011206	chr11	-	1327	7	ISM	ENSMUSG00000018752.20	ENSMUST00000180587.8	2235	13	258	3775	-30	-3121	5prime_fragment	FALSE	canonical	2	2	junction_6	12.432037465981	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTGGGGTTCAGAGTA	5421	False	NA	NA	False	AATAAA	-12	NA	69586666	69577177	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586271_69586421
ES_00011207	chr11	-	1560	2	FSM	ENSMUSG00000018776.11	ENSMUST00000231829.2	1494	2	-60	-6	-60	6	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTGGAGAGAGATGCC	10008	False	NA	NA	False	AATAAA	-23	NA	69652730	69650709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69651981_69652441
ES_00011208	chr11	-	3040	5	FSM	ENSMUSG00000042826.14	ENSMUST00000102585.2	3039	5	0	-1	0	1	multi-exon	FALSE	canonical	2	8	junction_2	2.59807621135332	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGTGTTATCTGACATTT	3397	False	NA	-3	True	ATTAAA	-16	NA	69692683	69686897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69689099_69689389_69689589_69690177_69690282_69690491_69690603_69692258
ES_00011209	chr11	-	1166	8	NNC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	243.436619585267	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	9902	False	NA	-4	True	AATAAA	-26	NA	69871076	69859053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_69859363_69859921_69860023_69860318_69860415_69861386_69861569_69865787_69866087_69870655_69870737_69870824_69870886_69871039
ES_00011210	chr11	-	540	3	FSM	ENSMUSG00000018574.15	ENSMUST00000134516.2	538	3	0	-2	0	2	multi-exon	FALSE	canonical	3	179	junction_1	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCCGTGAATGTCACT	NA	False	NA	0	True	AATAAA	-17	NA	69901737	69901012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_69901263_69901350_69901427_69901523
ES_00011213	chr11	-	711	5	NIC	ENSMUSG00000020831.19	novel	880	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	187.69523169223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128678	70126033	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_70126291_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ES_00011214	chr11	-	659	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108577.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	221.278607692254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128728	70126033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70126291_70126849_70127038_70128356_70128452_70128609
ES_00011215	chr11	-	779	3	FSM	ENSMUSG00000093989.2	ENSMUST00000125752.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	359	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130606	70128949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70129297_70129763_70129841_70130251
ES_00011216	chr11	-	322	1	NIC	ENSMUSG00000072768.2	novel	576	2	NA	NA	20	-236	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGGTTCAGAGCCTGCCC	1909	False	NA	NA	False	NA	NA	NA	70431406	70431084	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_70431100_70431400
ES_00011218	chr11	-	474	6	FSM	ENSMUSG00000018287.13	ENSMUST00000129434.2	474	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	320.543538384414	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATAGCCATCTTATTGG	NA	False	NA	NA	False	NA	NA	NA	70560116	70555224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70555303_70555403_70555494_70555608_70555694_70555813_70555873_70556122_70556191_70560022
ES_00011219	chr11	-	203	2	Intergenic	novelGene_599	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	350	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCCCTTGAAGGTCTC	8476	False	NA	NA	False	AAGAAA	-6	NA	70638581	70629276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_70629429_70638530
ES_00011220	chr11	-	2999	13	FSM	ENSMUSG00000040667.12	ENSMUST00000148168.8	3000	13	0	1	0	-1	multi-exon	FALSE	canonical	3	678	junction_7	65.4834054466388	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAGTCTATGGGTTGGTT	NA	False	NA	14	True	AATAAA	-44	NA	70860785	70833884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_70834149_70834704_70835065_70835307_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ES_00011221	chr11	-	938	6	NNC	ENSMUSG00000018446.9	novel	1175	6	NA	NA	0	-202	at_least_one_novel_splicesite	FALSE	canonical	3	135	junction_3	2013.8920924419	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAACAAAAGCTCCCTTGG	NA	False	NA	NA	False	TTTAAA	-17	NA	70873833	70868875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_70869071_70869253_70869377_70869514_70869607_70870835_70870930_70872995_70873147_70873550
ES_00011223	chr11	-	3515	13	NIC	ENSMUSG00000020805.15	novel	3329	12	NA	NA	12	-4	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	13.363247692417	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGGTGCCTGGCCTTC	NA	False	NA	-4	True	AATAAA	-19	NA	72158036	72132818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289_72157411_72157771
ES_00011224	chr11	-	207	1	Intergenic	novelGene_607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGGCTGGAGGACAAC	NA	False	NA	NA	False	NA	NA	NA	72617910	72617703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_72617700_72617900
ES_00011225	chr11	-	1028	6	NNC	ENSMUSG00000020774.10	novel	733	5	NA	NA	0	4415	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	7.31026675299883	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAATAGGAATCCACATA	NA	False	NA	NA	False	AATAAA	-18	NA	73215440	73191402	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_73191563_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
ES_00011227	chr11	-	245	1	FSM	ENSMUSG00000081932.2	ENSMUST00000119927.2	622	1	313	64	313	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACGAGGAGGAGGAAGAAG	NA	False	NA	NA	False	AAAAAG	-45	NA	73968653	73968408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_73968400_73968700
ES_00011228	chr11	-	7166	10	FSM	ENSMUSG00000020745.16	ENSMUST00000156794.2	7165	10	0	-1	0	0	multi-exon	FALSE	canonical	3	936	junction_4	82.1516213405973	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGTGGGGTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	74615144	74564774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ES_00011229	chr11	-	2807	9	NNC	ENSMUSG00000038351.15	novel	4743	23	NA	NA	2641	2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	18.6681547025945	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGGCTCTGATGGCTAT	7967	False	NA	-6	True	AATAAA	-16	NA	74748760	74740089	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748732
ES_00011230	chr11	-	308	1	Intergenic	novelGene_611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGAGGGCTG	3389	False	NA	NA	False	NA	NA	NA	74828838	74828530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_74828500_74828800
ES_00011231	chr11	-	544	1	FSM	ENSMUSG00000082481.2	ENSMUST00000119773.2	400	1	-133	-11	-133	11	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAACCTAAA	NA	False	NA	NA	False	AATAAA	-11	NA	74962172	74961628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_74961600_74962200
ES_00011232	chr11	-	2970	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGCTGTAGTCATGATT	NA	False	NA	NA	False	NA	NA	NA	75239119	75186592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_75186627_75191101_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ES_00011233	chr11	-	5231	6	ISM	ENSMUSG00000045374.19	ENSMUST00000173320.8	6908	10	28	6407	28	816	5prime_fragment	FALSE	canonical	2	11	junction_3	4.04969134626332	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGCTTTGTTTTTGT	2837	False	NA	NA	False	NA	NA	NA	75345515	75338176	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
ES_00011234	chr11	-	1061	1	FSM	ENSMUSG00000109715.2	ENSMUST00000209836.2	2795	1	283	1451	283	-1451	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATCGGGCCCGCCCGG	8919	False	NA	NA	False	NA	NA	NA	75423614	75422553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_75422600_75423600
ES_00011235	chr11	-	2214	9	NNC	ENSMUSG00000020847.16	novel	2199	9	NA	NA	-28824	-4	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	4.18330013267038	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGACTGGGCGCAAGAGT	NA	False	NA	-14	True	AATAAA	-20	NA	75858079	75721828	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775_75801886_75857984
ES_00011236	chr11	-	6181	24	NNC	ENSMUSG00000017631.20	novel	6271	23	NA	NA	-236	4	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_23	55.4650727135133	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTGGTTGTTTGTGT	NA	False	NA	3	True	AATAAA	-40	NA	76514620	76307555	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002_76514161_76514490
ES_00011237	chr11	-	4312	10	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	70944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.4511759379824	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGGAAAGAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	76654405	76546483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_76546513_76617433_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ES_00011238	chr11	-	1520	6	NNC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	70	-6	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	63.3782297007419	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGAGTCGTTGGGAGATT	NA	False	NA	-5	True	ATTAAA	-15	NA	77404126	77398930	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403723_77403985
ES_00011239	chr11	-	1482	6	NNC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	92	-7	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	72.6129465040498	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGGAGTCGTTGGGAGAT	NA	False	NA	-6	True	ATTAAA	-14	NA	77404104	77398931	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403493_77403723_77403985
ES_00011241	chr11	-	201	1	Intergenic	novelGene_629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTACTGGTCTAACACACA	NA	False	NA	NA	False	NA	NA	NA	77895875	77895674	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_77895700_77895900
ES_00011242	chr11	-	925	5	FSM	ENSMUSG00000017386.11	ENSMUST00000148218.2	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	31.9482002622996	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGATGCCCCTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	78056342	78051618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78051775_78051858_78052021_78052112_78052449_78053207_78053260_78056123
ES_00011244	chr11	-	2158	12	FSM	ENSMUSG00000001095.6	ENSMUST00000001122.6	2412	12	40	214	40	-214	multi-exon	FALSE	canonical	1	1	junction_6	4.88884714899955	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGGTGTGTTTCCCGGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	78313003	78288126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_78288682_78289116_78289255_78289857_78290020_78290909_78291032_78291301_78291391_78291569_78291789_78293897_78294021_78294139_78294312_78295203_78295404_78295496_78295634_78297635_78297765_78312891
ES_00011246	chr11	-	220	2	Intergenic	novelGene_637	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGTAGATAGAGACAGAAGA	NA	False	NA	NA	False	NA	NA	NA	78635848	78607645	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_78607678_78635660
ES_00011248	chr11	-	1192	2	Genic_Genomic	ENSMUSG00000049489.6	novel	1224	1	NA	NA	62	33686	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGTAGATAGAGACAGAAGA	6657	False	NA	NA	False	NA	NA	NA	78642493	78607645	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_78607676_78641331
ES_00011249	chr11	-	454	2	Intergenic	novelGene_643	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79612479	79606724	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_79606849_79612149
ES_00011250	chr11	-	200	1	Intergenic	novelGene_648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATCCACCTACAAC	NA	False	NA	NA	False	NA	NA	NA	79907793	79907593	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_79907600_79907800
ES_00011252	chr11	-	5337	22	FSM	ENSMUSG00000035441.15	ENSMUST00000041065.14	5354	22	12	5	-10	-5	multi-exon	FALSE	canonical	1	2	junction_3	2.91683672973592	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTATTTTAAAGGTGTTCT	NA	False	NA	-4	True	AATAAA	-9	NA	80670839	80372956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_80375209_80448259_80448415_80477672_80477787_80483612_80483718_80484564_80484710_80492408_80492633_80528699_80528908_80531044_80531212_80548218_80548352_80553866_80553942_80557400_80557472_80561674_80561846_80565439_80565555_80565642_80565789_80566876_80567081_80567647_80567765_80570845_80570942_80573207_80573262_80575150_80575317_80576675_80576770_80583706_80583916_80670523
ES_00011253	chr11	-	3633	8	FSM	ENSMUSG00000020696.19	ENSMUST00000071152.14	3633	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	57.61306541161	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2743	False	NA	NA	False	AATAAA	-11	NA	82762036	82694647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82736577_82736722_82761833
ES_00011256	chr11	-	2621	2	Fusion	ENSMUSG00000072621.14_ENSMUSG00000069793.13	novel	5769	5	NA	NA	7510	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAATTTGTCTTTAAG	NA	False	NA	-6	True	NA	NA	NA	82919482	82869215	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_-_82871681_82919326
ES_00011258	chr11	-	1849	14	NNC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	0	38931	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	139.650196973699	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGGAAAAAAAATGAAAGAA	NA	False	NA	NA	False	AAGAAA	-37	NA	84404348	84274749	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84274778_84313681_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ES_00011259	chr11	-	1306	7	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-78	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	15.7585955380971	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCCCCCCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	84719898	84711681	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716348_84719576
ES_00011260	chr11	-	3016	14	NNC	ENSMUSG00000020530.15	novel	3056	14	NA	NA	-657	-33	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_13	145.910404542809	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTTCTTAAAGAATAAATG	NA	False	NA	-33	True	NA	NA	NA	84762300	84723219	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84762094
ES_00011261	chr11	-	2478	15	FSM	ENSMUSG00000020530.15	ENSMUST00000018547.9	2478	15	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	203.856892581686	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCATTCGTTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	84761472	84723686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84745080_84745207_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
ES_00011263	chr11	-	1015	6	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	1	2796	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	253.787785364071	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATATCTCAGTGTCAT	NA	False	NA	-24	True	AATAAA	-21	NA	84761614	84748748	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ES_00011266	chr11	-	605	2	FSM	ENSMUSG00000020526.13	ENSMUST00000156046.2	761	2	0	156	0	-156	multi-exon	FALSE	canonical	3	418	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTTTTTCTTCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	84807150	84806420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_84806957_84807081
ES_00011267	chr11	-	6906	34	NIC	ENSMUSG00000000804.15	novel	7053	34	NA	NA	85	5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_18	13.9856281998075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGATCCTGTTTT	7679	False	NA	-9	True	AGTAAA	-27	NA	85030670	84875262	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927305_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
ES_00011269	chr11	-	6580	14	NNC	ENSMUSG00000018481.10	novel	6463	13	NA	NA	0	424	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.15029538324	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTTCCTAGTACAAAAAG	NA	False	NA	NA	False	NA	NA	NA	85125956	85077663	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_85077793_85078099_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
ES_00011270	chr11	-	269	1	Intergenic	novelGene_669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAGGAAAGTGACCATCT	5520	False	NA	NA	False	NA	NA	NA	85077961	85077692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_85077700_85078000
ES_00011271	chr11	-	3972	27	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	0	-539	combination_of_known_junctions	FALSE	canonical	3	33	junction_24	54.4039243276486	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAAGTGCAGCCACTTG	NA	False	NA	NA	False	AATAAA	-28	NA	86148401	86103452	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029_86148242_86148330
ES_00011272	chr11	-	555	5	FSM	ENSMUSG00000020516.16	ENSMUST00000138810.3	555	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	135.14806694881	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTCTCCCTCTCCCCTC	NA	False	NA	NA	False	AAAAAG	-1	NA	86435591	86423597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_86423667_86424851_86424973_86426236_86426287_86434756_86434872_86435391
ES_00011274	chr11	-	259	1	Intergenic	novelGene_676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTCCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	86914224	86913965	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_86914000_86914200
ES_00011275	chr11	-	4026	11	NNC	ENSMUSG00000020493.9	novel	3824	10	NA	NA	-174	45555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.3238075793812	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCATAGCATTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	86999708	86934423	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_86934454_86979980_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
ES_00011276	chr11	-	220	2	NNC	ENSMUSG00000085310.8	novel	1118	3	NA	NA	-9294	-4880	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCCCCCTCCATAGTAAA	7331	False	NA	NA	False	NA	NA	NA	87027078	87017490	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_87017511_87026878
ES_00011277	chr11	-	4372	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	-453	-1858	-5	-88	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATGGTAAACTTTAAATGT	NA	False	NA	NA	False	NA	NA	NA	87295785	87267558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
ES_00011278	chr11	-	4632	11	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	-48632	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	57.394773281197	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATGGTAAACTTTAAATGT	NA	False	NA	NA	False	NA	NA	NA	87344412	87267558	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129_87295272_87343341_87343868_87344084
ES_00011280	chr11	-	206	1	Intergenic	novelGene_681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAACAAATGCGCGGTC	6293	False	NA	NA	False	NA	NA	NA	87336584	87336378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_87336400_87336600
ES_00011281	chr11	-	415	2	Antisense	novelGene_ENSMUSG00000010342.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAGCGTTCACCATAG	3896	False	NA	NA	False	AATAAA	-41	NA	87355193	87353426	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_87353797_87355148
ES_00011283	chr11	-	3784	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	0	61964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.421985581654	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGATTCCAGGGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	88755412	88659653	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_88659680_88721617_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ES_00011285	chr11	-	6068	12	NNC	ENSMUSG00000000276.12	novel	5208	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.9163047805136	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGTTGTTTGACAGACA	3832	False	NA	-2	True	AATAAA	-24	NA	88951574	88925999	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_88927142_88928689_88931738_88932273_88932386_88932987_88933116_88935065_88935138_88939714_88939829_88940674_88940727_88941144_88941303_88941494_88941639_88943252_88943373_88946183_88946344_88950756
ES_00011286	chr11	-	478	2	Genic_Genomic	ENSMUSG00000081604.6	novel	411	1	NA	NA	0	82477	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACCCTTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	93928454	93845566	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr11_-_93845596_93928005
ES_00011287	chr11	-	3551	11	NNC	ENSMUSG00000020863.16	novel	3478	10	NA	NA	-20	0	intron_retention	FALSE	canonical	3	14	junction_5	100.65689246147	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212741	94181964	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94189775_94189922_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ES_00011288	chr11	-	2610	9	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	33912	-719	-7878	719	3prime_fragment	FALSE	canonical	2	4	junction_5	36.7132043684558	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGTTGGCCTATGCTG	3971	False	NA	NA	False	NA	NA	NA	94249890	94233401	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577
ES_00011289	chr11	-	909	4	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-321	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	32.8937684067971	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	614	False	NA	-4	True	AATAAA	-17	NA	94242333	94234120	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242267
ES_00011290	chr11	-	747	4	FSM	ENSMUSG00000039055.5	ENSMUST00000127158.2	747	4	0	0	0	0	multi-exon	TRUE	canonical	3	186	junction_3	8.60232526704263	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAGGAAATCAGGAATG	7836	False	NA	NA	False	GGGGCT	-43	NA	94541357	94538557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_94538575_94538769_94538889_94538968_94539056_94540833
ES_00011291	chr11	-	3414	15	FSM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	245.342544793426	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
ES_00011292	chr11	-	289	2	Antisense	novelGene_ENSMUSG00000088854.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACAAACTTTTTGTTTG	7999	False	NA	NA	False	NA	NA	NA	95829581	95768245	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_95768366_95829412
ES_00011293	chr11	-	207	1	Intergenic	novelGene_699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGAGAGAAAGAAAAGAAAGG	1909	False	NA	NA	False	NA	NA	NA	95840559	95840352	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_95840400_95840600
ES_00011294	chr11	-	7922	14	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	204.16338161025	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTGTGTCTGTGC	NA	False	NA	-8	True	AATAAA	-16	NA	95873420	95847991	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ES_00011295	chr11	-	8364	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	3	191	junction_5	125.171983727207	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTGTGTCTGTGC	NA	False	NA	-8	True	AATAAA	-16	NA	95896758	95847991	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ES_00011296	chr11	-	460	1	FSM	ENSMUSG00000103376.2	ENSMUST00000194862.2	823	1	361	2	361	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACATTTTATTCCTAAGAA	NA	False	NA	NA	False	AATAAA	-10	NA	95897620	95897160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_95897200_95897600
ES_00011297	chr11	-	3900	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	12	0	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96714822	96708256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
ES_00011298	chr11	-	205	1	Intergenic	novelGene_709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCTGTGAGTTCGAGGA	NA	False	NA	NA	False	NA	NA	NA	96805459	96805254	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_96805300_96805500
ES_00011299	chr11	-	1434	3	NIC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	7	-6518	combination_of_known_splicesites	FALSE	canonical	3	301	junction_2	103	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAACAGCAAGAATGAG	NA	False	NA	-11	True	AATAAA	-21	NA	96868530	96851562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_96852836_96854190_96854268_96868446
ES_00011300	chr11	-	3357	10	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	13.1487219488773	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGTGCGCTCAGGCT	6084	False	NA	-6	True	AATAAA	-13	NA	97042321	97027002	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
ES_00011301	chr11	-	643	3	FSM	ENSMUSG00000001440.6	ENSMUST00000132633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	1118	junction_2	60	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTTAGACATGAGCTAAG	NA	False	NA	NA	False	AAAACA	-38	NA	97055048	97053335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97053508_97054178_97054341_97054739
ES_00011303	chr11	-	228	2	Intergenic	novelGene_713	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	140	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAACTTTTAAAAGATGA	4770	False	NA	NA	False	NA	NA	NA	97122202	97094691	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_97094868_97122150
ES_00011304	chr11	-	1239	12	FSM	ENSMUSG00000001441.14	ENSMUST00000154372.9	1239	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	115.415025448048	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATCTTTACGTTTTTAAT	7649	False	NA	NA	False	AATGAA	-42	NA	97158457	97125880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97141453_97141570_97149099_97149178_97158420
ES_00011305	chr11	-	237	2	Intergenic	novelGene_714	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	228	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAATAAAGGGCCTTA	NA	False	NA	NA	False	NA	NA	NA	97213809	97189498	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_97189645_97213718
ES_00011306	chr11	-	480	2	FSM	ENSMUSG00000071415.7	ENSMUST00000150955.2	480	2	0	0	0	0	multi-exon	FALSE	canonical	3	13439	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAAAGTCTCTGCTCTG	NA	False	NA	-53	True	AATATA	-2	NA	97669461	97668881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_97668991_97669090
ES_00011308	chr11	-	408	1	Intergenic	novelGene_725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATTCTTACAAATA	9828	False	NA	NA	False	NA	NA	NA	97772040	97771632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_97771600_97772000
ES_00011309	chr11	-	3501	14	NIC	ENSMUSG00000020882.18	novel	2236	14	NA	NA	16	-7	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	30.0524196861764	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGAGCCTGTTTTCTT	NA	False	NA	-7	True	TATAAA	-26	NA	97913437	97892340	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ES_00011310	chr11	-	1704	12	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	16	2	combination_of_known_junctions	TRUE	canonical	3	22	junction_6	22.8711807541917	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGGTGTCTGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	97913437	97895748	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ES_00011311	chr11	-	6953	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGCTTCACCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	98084102	98043840	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ES_00011312	chr11	-	5026	35	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	633	junction_3	222.753904349877	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCTGCCTCCTTTCCT	NA	False	NA	1	True	ATTAAA	-27	NA	98915004	98884299	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00011313	chr11	-	702	6	NNC	ENSMUSG00000020914.18	novel	632	3	NA	NA	1	-233	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_1	591.582487908491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACCTTTTATATAGTT	NA	False	NA	NA	False	AATAAA	-22	NA	98915003	98907651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_98907768_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ES_00011314	chr11	-	1502	3	FSM	ENSMUSG00000037935.17	ENSMUST00000155062.2	481	3	-1021	0	-1021	0	multi-exon	FALSE	canonical	3	695	junction_1	9	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGTGGAAAACGGGGCT	NA	False	NA	NA	False	NA	NA	NA	99112678	99110045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_99110218_99110440_99110573_99111480
ES_00011315	chr11	-	1115	8	FSM	ENSMUSG00000053797.11	ENSMUST00000007280.9	1565	8	419	31	419	-31	multi-exon	FALSE	canonical	1	2	junction_1	1.12485826771597	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCTAATAAAGCTTTTTG	6663	False	NA	NA	False	NA	NA	NA	100139309	100136947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100137155_100137294_100137342_100137435_100137657_100137927_100138054_100138139_100138302_100138387_100138545_100138682_100138766_100139197
ES_00011316	chr11	-	604	3	FSM	ENSMUSG00000001552.15	ENSMUST00000155746.8	684	3	0	80	0	0	multi-exon	FALSE	canonical	3	399	junction_2	76.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGAAGGGCCTGGAGG	NA	False	NA	NA	False	NA	NA	NA	100288589	100274220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100274481_100276998_100277215_100288461
ES_00011318	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000239499.2	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	720.895014063612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5919	False	NA	-21	True	AATAAA	-15	NA	100510457	100473643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
ES_00011319	chr11	-	2585	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	1959	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	727.080512052082	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAATGTTTTGACCGT	NA	False	NA	28	True	ATTAAA	-10	NA	100502224	100473664	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100501307
ES_00011324	chr11	-	862	7	FSM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	0	-9	0	9	multi-exon	FALSE	canonical	1	2	junction_6	3.45205252953466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCCTGTATTCTCCCCT	NA	False	NA	-1	True	AATAAA	-23	NA	101315495	101309628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
ES_00011325	chr11	-	859	6	FSM	ENSMUSG00000097487.8	ENSMUST00000103102.10	1463	6	613	-9	-51	9	multi-exon	FALSE	canonical	1	1	junction_1	4.22374241638857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCCTGTATTCTCCCCT	NA	False	NA	-1	True	AATAAA	-23	NA	101315546	101309628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101310013_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
ES_00011326	chr11	-	2305	13	FSM	ENSMUSG00000017724.15	ENSMUST00000107176.8	2377	13	79	-7	18	2	multi-exon	FALSE	canonical	2	8	junction_11	4.75803414120673	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTCTTTGCTTCCATGA	NA	False	NA	1	True	AATAAA	-26	NA	101676118	101660565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665054_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ES_00011327	chr11	-	813	2	FSM	ENSMUSG00000052373.15	ENSMUST00000127053.2	813	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCTCGCAGGAAGCAAAG	NA	False	NA	NA	False	NA	NA	NA	101901236	101899465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101899511_101900468
ES_00011328	chr11	-	780	8	FSM	ENSMUSG00000052373.15	ENSMUST00000107167.2	2066	8	0	1286	0	-1286	multi-exon	FALSE	canonical	2	3	junction_3	1.88441513689613	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTATAGCATACCTGCA	NA	False	NA	NA	False	NA	NA	NA	101917763	101909447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101909534_101911297_101911380_101914152_101914291_101914527_101914609_101915902_101915981_101916206_101916326_101916557_101916683_101917692
ES_00011329	chr11	-	2651	6	FSM	ENSMUSG00000052373.15	ENSMUST00000147838.8	2834	6	0	183	0	-183	multi-exon	FALSE	canonical	2	3	junction_1	2.19089023002066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCATTATTAAATGTCTC	NA	False	NA	NA	False	NA	NA	NA	101917760	101912110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_101914291_101914527_101914609_101915902_101915981_101916206_101916326_101916557_101916683_101917692
ES_00011330	chr11	-	2244	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	0	46954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAATGGGGTTGCGGGCCT	6391	False	NA	NA	False	NA	NA	NA	102076087	102006368	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102006392_102053322_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ES_00011333	chr11	-	3668	26	NNC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	1	22	junction_24	62.2363237988877	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAACGTGTGCCGTGTGG	NA	False	NA	-6	True	ATTAAA	-19	NA	102120949	102086575	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097598_102097732_102097993_102115559_102115782_102120830
ES_00011335	chr11	-	3213	20	NIC	ENSMUSG00000020923.18	novel	3286	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	193.98939057719	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	9161	False	NA	-9	True	NA	NA	NA	102207506	102196818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_102197593_102197681_102197826_102197908_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
ES_00011336	chr11	-	3060	20	NIC	ENSMUSG00000020923.18	novel	3013	20	NA	NA	258	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_19	210.872137020862	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	8619	False	NA	-9	True	NA	NA	NA	102210310	102196818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102210149
ES_00011337	chr11	-	7122	9	NNC	ENSMUSG00000034621.15	novel	6871	8	NA	NA	-28	26872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.6671747943864	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTACATAAGCACAGAACTG	416	False	NA	NA	False	NA	NA	NA	102447246	102339868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102339897_102366738_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
ES_00011338	chr11	-	796	4	FSM	ENSMUSG00000078640.10	ENSMUST00000139829.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.16024689946929	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	4	True	NA	NA	False	NA	NA	NA	102470101	102467269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102467624_102467724_102467906_102469575_102469722_102469986
ES_00011339	chr11	-	2286	6	NNC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	0	48976	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.095094364929	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCATCAGAAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	102588496	102526535	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102526572_102575515_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
ES_00011340	chr11	-	3341	29	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	0	18081	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	365.095338052059	325	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTTAAAAATTTGGGCAC	8466	False	NA	NA	False	NA	NA	NA	102771793	102711217	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102711239_102729302_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
ES_00011342	chr11	-	3295	16	NNC	ENSMUSG00000051378.11	novel	3326	16	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_12	80.2369823294304	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGGAAAGTTAGTGCT	3751	False	NA	-7	True	AATAAA	-32	NA	102815923	102796354	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805748_102805975_102806081_102806368_102806527_102807014_102807342_102815808
ES_00011343	chr11	-	2342	2	FSM	ENSMUSG00000020935.9	ENSMUST00000134335.2	1320	2	-1013	-9	-1013	7	multi-exon	FALSE	canonical	3	1127	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCACTTGGCCTTTGTTCA	7764	False	NA	2	True	NA	NA	NA	102889387	102884865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_102885999_102888178
ES_00011344	chr11	-	4236	18	FSM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	106	-81	106	81	multi-exon	TRUE	canonical	2	3	junction_6	4.84999910819383	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTGGAAAGCTACTCTGA	8280	False	NA	81	True	NA	NA	NA	103254127	103222241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072_103251745_103253032_103253161_103254094
ES_00011345	chr11	-	723	4	FSM	ENSMUSG00000034255.19	ENSMUST00000136491.3	748	4	25	0	25	0	multi-exon	FALSE	canonical	1	1	junction_3	4.54606056566195	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACTCCTCTGTTCAGTG	NA	False	NA	NA	False	NA	NA	NA	103247162	103230054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103230103_103230280_103230464_103230810_103231231_103247090
ES_00011346	chr11	-	917	5	FSM	ENSMUSG00000020946.14	ENSMUST00000145265.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	142.958910180513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGAGGCTTTTACA	NA	False	NA	NA	False	NA	NA	NA	103588524	103569758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103588455
ES_00011347	chr11	-	247	2	Intergenic	novelGene_754	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTGTGGCCTGCCCATA	NA	False	NA	NA	False	NA	NA	NA	103855850	103829647	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_103829686_103855641
ES_00011348	chr11	-	5444	14	NIC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-113	3	combination_of_known_splicesites	FALSE	canonical	3	61	junction_11	60.3367277042696	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCAGGCTTTTCTTGATA	8056	False	NA	1	True	NA	NA	NA	104333230	104224323	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104269510_104269653_104314747_104316120_104332550
ES_00011349	chr11	-	5588	16	NIC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-113	3	combination_of_known_splicesites	FALSE	canonical	3	22	junction_15	68.0631732698054	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCAGGCTTTTCTTGATA	8056	False	NA	1	True	NA	NA	NA	104333230	104224323	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104317249_104317295_104332550
ES_00011350	chr11	-	5166	15	NNC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-639	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_14	61.7770844509945	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCAGGCTTTTCTTGA	7530	False	NA	-1	True	NA	NA	NA	104333756	104224325	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104333451
ES_00011351	chr11	-	4876	14	NIC	ENSMUSG00000018412.17	novel	5061	15	NA	NA	87	1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_13	79.7567307170658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCAGGCTTTTCTTGA	7646	False	NA	-1	True	NA	NA	NA	104359600	104224325	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104269510_104269653_104314747_104316120_104358464_104358579_104359411
ES_00011352	chr11	-	4807	15	NNC	ENSMUSG00000018412.17	novel	5061	15	NA	NA	-577	1	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_14	61.3522782039618	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCAGGCTTTTCTTGA	9755	False	NA	-1	True	NA	NA	NA	104360264	104224325	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104360243
ES_00011354	chr11	-	4807	12	NIC	ENSMUSG00000040548.17	novel	4934	12	NA	NA	15	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	46.9919986155547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAGTCTTTATTTTAA	2853	False	NA	-60	True	AATATA	-10	NA	106504234	106393220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106504040
ES_00011355	chr11	-	3225	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9052	0	at_least_one_novel_splicesite	FALSE	canonical	3	249	junction_14	395.431726091875	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	372	False	NA	-9	True	AATAAA	-19	NA	106615272	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ES_00011356	chr11	-	3338	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9057	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_16	457.874193795359	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	367	False	NA	-9	True	AATAAA	-19	NA	106615277	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615168
ES_00011357	chr11	-	3267	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9068	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_4	509.466186861852	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	356	False	NA	-9	True	AATAAA	-19	NA	106615288	106545042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
ES_00011358	chr11	-	3254	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9057	-3	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_14	424.775528956177	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTTATCTGCATTCAAG	367	False	NA	-13	True	AATAAA	-15	NA	106615277	106545046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615168
ES_00011359	chr11	-	3232	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9056	-10	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	480.041090833784	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTCTTCAGTTATCTGC	368	False	NA	-20	True	AATAAA	-8	NA	106615276	106545053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106545989_106552827_106552851_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ES_00011361	chr11	-	1972	7	ISM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	931	0	889	0	3prime_fragment	FALSE	canonical	3	44	junction_5	8.31998931623246	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	5250	False	NA	NA	False	AATAAA	-33	NA	106669410	106659078	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260
ES_00011362	chr11	-	1076	8	NNC	ENSMUSG00000020718.13	novel	1506	8	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	20.9469689980217	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATACAGTTTTGGACTT	4319	False	NA	NA	False	AATAAA	-28	NA	106670341	106659083	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106670209
ES_00011363	chr11	-	2555	7	FSM	ENSMUSG00000020718.13	ENSMUST00000134029.8	2728	7	0	173	0	-173	multi-exon	FALSE	canonical	3	18	junction_6	17.5538852932588	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTTCTGTATAGATCTC	4361	False	NA	NA	False	NA	NA	NA	106670299	106662042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
ES_00011364	chr11	-	5493	20	Fusion	ENSMUSG00002076856.1_ENSMUSG00000018363.17	novel	2358	20	NA	NA	3	9	intron_retention	FALSE	canonical	3	9	junction_16	13.0135237562321	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTTACTTGTTTTGAA	NA	False	NA	3	True	AATGAA	-43	NA	106811584	106710882	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106759822_106759935_106762327_106762437_106766726_106766766_106811006
ES_00011366	chr11	-	288	1	FSM	ENSMUSG00002076856.1	ENSMUST00020183457.1	104	1	3	-187	3	187	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGAGCTCTGCGTCCCGCT	NA	False	NA	NA	False	NA	NA	NA	106811584	106811296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106811300_106811600
ES_00011367	chr11	-	1843	10	FSM	ENSMUSG00000018362.15	ENSMUST00000145331.8	1843	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1279.26507644134	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9767	False	NA	NA	False	AATAAA	-27	NA	106890266	106879454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106887334_106887473_106888063_106888141_106890184
ES_00011368	chr11	-	11465	29	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_25	20.5924991297356	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGGTCAGATC	NA	False	NA	-6	True	AATAAA	-22	NA	107022950	106923906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106986541_106986752_106990391_106990616_107001638_107002462_107022099
ES_00011369	chr11	-	8306	25	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	393	49	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_21	19.1332589284268	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTTGTGTGGATAATTT	NA	False	NA	NA	False	AAAAAG	-28	NA	107022355	106933817	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106986541_106986752_106990391_106990616_107001638_107002462_107022099
ES_00011370	chr11	-	1409	4	NIC	ENSMUSG00000040481.18	novel	2177	6	NA	NA	29	33	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	17.0489491367259	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACTATCACCCAAATCAC	NA	False	NA	NA	False	AAAAAG	-12	NA	106943687	106933833	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_106934652_106935317_106935492_106937825_106938170_106943614
ES_00011372	chr11	-	232	1	Intergenic	novelGene_776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCCAAGTCAGCCTGGT	NA	False	NA	NA	False	AATAAA	-8	NA	107473238	107473006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_107473000_107473200
ES_00011373	chr11	-	230	2	Antisense	novelGene_ENSMUSG00000020721.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAAATGTATGTATTTAA	5279	False	NA	NA	False	NA	NA	NA	107507028	107484622	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_107484651_107506826
ES_00011374	chr11	-	634	3	FSM	ENSMUSG00000050965.15	ENSMUST00000134725.2	541	3	-275	182	5	-182	multi-exon	FALSE	canonical	2	11	junction_1	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGCTATTAATAAAGAGAC	6289	False	NA	NA	False	NA	NA	NA	108234749	108082865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_108083039_108231471_108231504_108234320
ES_00011375	chr11	-	1677	10	FSM	ENSMUSG00000020599.14	ENSMUST00000106704.3	3464	10	-33	1820	-10	-1820	multi-exon	FALSE	canonical	2	4	junction_9	9.53486131241108	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTATGTATGTATGTATG	NA	False	NA	NA	False	NA	NA	NA	109188965	109148647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109188763
ES_00011376	chr11	-	2511	2	FSM	ENSMUSG00000056687.10	ENSMUST00000070956.4	2765	2	254	0	-157	0	multi-exon	FALSE	canonical	0	0	junction_1	0	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	109254226	109245603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_109247820_109253931
ES_00011377	chr11	-	6043	25	ISM	ENSMUSG00000018800.15	ENSMUST00000043961.12	8231	39	34618	3	34562	-3	3prime_fragment	FALSE	canonical	1	7	junction_11	4.40466135663875	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGACAGACTTCAGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	110193886	110160197	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_110163393_110164151_110164208_110165145_110165226_110166089_110166240_110167279_110167400_110168213_110168309_110168387_110168464_110168996_110169173_110169934_110170027_110170117_110170236_110170451_110170579_110176519_110176612_110177589_110177665_110178407_110178543_110178888_110179003_110180616_110180788_110182911_110183026_110184065_110184204_110184612_110184741_110187293_110187464_110188861_110189064_110190716_110190837_110192238_110192379_110192556_110192648_110193818
ES_00011378	chr11	-	590	2	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	-2	-22830	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	0	69	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGTAAGATGTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	113092666	112958172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_112958213_113092116
ES_00011379	chr11	-	2771	10	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	188.939601035638	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7773	False	NA	-2	True	AATAAA	-19	NA	113456578	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
ES_00011380	chr11	-	2658	11	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	152	junction_10	131.475054668177	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7746	False	NA	-2	True	AATAAA	-19	NA	113456605	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_113136692_113136717_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ES_00011381	chr11	-	2687	10	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-26085	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	188.348639168281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	NA	False	NA	-2	True	AATAAA	-19	NA	113482690	113135678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113482607
ES_00011382	chr11	-	1217	7	NIC	ENSMUSG00000018727.20	novel	1235	7	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	75.416620626137	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600828	113588997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ES_00011383	chr11	-	1237	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-131	-1	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	76.0453081319873	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGCATTGATTCCTTTT	NA	False	NA	-10	True	AATATA	-15	NA	113600483	113588998	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590740_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ES_00011384	chr11	-	1190	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	71.497109974417	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGCATTGATTCCTTTT	NA	False	NA	-10	True	AATATA	-15	NA	113600831	113588998	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ES_00011385	chr11	-	2085	4	FSM	ENSMUSG00000048498.8	ENSMUST00000062787.8	2088	4	3	0	3	0	multi-exon	TRUE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTGTTTTTTTTTAT	7500	False	NA	NA	False	NA	NA	NA	114953000	114942742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_114944187_114945301_114945405_114946071_114946420_114952810
ES_00011388	chr11	-	603	7	NNC	ENSMUSG00000034566.11	novel	625	6	NA	NA	-476	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	8	junction_6	1210.5057368261	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCTGGGACGGAGCCC	NA	False	NA	-62	True	AAAAAG	-43	NA	115311264	115306573	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717_115310801_115311239
ES_00011389	chr11	-	867	6	NNC	ENSMUSG00000020736.13	novel	836	5	NA	NA	0	25088	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	79.3261621408725	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGACTTATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	115382641	115356157	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115356219_115381250_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ES_00011390	chr11	-	1423	6	NNC	ENSMUSG00000020737.13	novel	1375	5	NA	NA	0	32021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	666.615151342962	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGACTTATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	115405197	115356157	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115356220_115388176_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ES_00011391	chr11	-	845	5	FSM	ENSMUSG00000020736.13	ENSMUST00000106530.8	836	5	0	-9	0	9	multi-exon	FALSE	canonical	3	6	junction_1	83.4487117935322	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGATGCTCCTTTTCCT	NA	False	NA	1	True	AATAAA	-28	NA	115382641	115381236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115381596_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ES_00011393	chr11	-	385	2	Intergenic	novelGene_788	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACTCTGGTCTCCCAGC	NA	False	NA	NA	False	NA	NA	NA	115431518	115400083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_-_115400311_115431360
ES_00011394	chr11	-	1000	4	FSM	ENSMUSG00000020738.17	ENSMUST00000021084.10	1000	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1872.39424860851	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427055	115413927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115414596_115421171_115421244_115425381_115425510_115426923
ES_00011395	chr11	-	600	2	FSM	ENSMUSG00000034471.13	ENSMUST00000125658.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCTGGACTGAGCAAACC	7780	False	NA	NA	False	NA	NA	NA	115691707	115690825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_115690904_115691185
ES_00011396	chr11	-	1669	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	0	3155	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5882.00448401733	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTGTTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	115915299	115909582	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_115909616_115913112_115914362_115914450_115914605_115914707_115914846_115915204
ES_00011399	chr11	-	3044	6	FSM	ENSMUSG00000054517.10	ENSMUST00000067632.4	3048	6	4	0	2	0	multi-exon	FALSE	canonical	1	1	junction_2	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTAAGCATCTCTTTCTT	8153	False	NA	NA	False	TATAAA	-14	NA	116021948	116015533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_116017467_116017987_116018054_116018263_116018442_116018523_116018758_116019021_116019118_116021411
ES_00011400	chr11	-	5344	31	NIC	ENSMUSG00000020776.19	novel	5252	30	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_30	9.91945338995832	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTTTTGGATTTGCA	NA	False	NA	-10	True	ATTAAA	-17	NA	116058979	116033111	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043771_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116057958_116058055_116058377
ES_00011402	chr11	-	5457	15	ISM	ENSMUSG00000034282.4	ENSMUST00000037007.4	6384	22	5377	3	5377	-3	3prime_fragment	FALSE	canonical	1	1	junction_4	2.26328278825069	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCGAGTCTCCTCTCAT	9368	False	NA	NA	False	AATAAA	-12	NA	116123526	116111387	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_116115028_116115893_116115987_116116087_116116199_116116309_116116394_116117814_116117966_116118383_116118578_116118667_116118807_116118884_116119064_116120226_116120400_116120570_116120669_116120794_116120950_116121241_116121389_116121743_116121870_116123219_116123316_116123455
ES_00011405	chr11	-	3629	19	NNC	ENSMUSG00000020806.16	novel	3593	19	NA	NA	8110	16	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_18	29.5301164538472	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCTCCAAGAGAAGGAAA	NA	False	NA	1	True	ATTAAA	-35	NA	116506916	116488974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116506873
ES_00011407	chr11	-	2579	3	NNC	ENSMUSG00000053113.4	novel	2552	2	NA	NA	0	51189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	659.5	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACATTCGTAGTCACAG	NA	False	NA	NA	False	NA	NA	NA	117860012	117805715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_117805743_117856904_117859145_117859700
ES_00011408	chr11	-	571	5	FSM	ENSMUSG00000033987.17	ENSMUST00000217584.2	762	5	178	13	178	-13	multi-exon	FALSE	canonical	0	0	junction_4	2.27760839478607	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACGAACAACAAGATCACAG	8273	False	NA	NA	False	NA	NA	NA	117979842	117974568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_117974650_117976893_117976999_117977738_117977896_117978955_117979117_117979775
ES_00011409	chr11	-	4029	1	ISM	ENSMUSG00000039976.5	ENSMUST00000036113.4	6986	12	81426	0	74903	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTCCTGTGCCTTGA	3022	False	NA	-1	True	AATAAA	-15	NA	119037899	119033870	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr11_-_119033900_119037900
ES_00011410	chr11	-	204	2	Antisense	novelGene_ENSMUSG00000025371.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	119814840	119756899	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr11_-_119757011_119814747
ES_00011411	chr11	-	574	3	FSM	ENSMUSG00000085207.2	ENSMUST00000129379.2	493	3	-106	25	-106	-25	multi-exon	FALSE	canonical	1	1	junction_1	1.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTAACCCGGGAGGTC	3302	False	NA	NA	False	NA	NA	NA	119833630	119826653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_119826876_119829987_119830117_119833407
ES_00011412	chr11	-	3620	27	NNC	ENSMUSG00000039781.15	novel	3581	26	NA	NA	-20	33112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.6060539770043	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTGGAGAATCCAGCAGC	NA	False	NA	NA	False	AAGAAA	-7	NA	119977673	119922143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_119922170_119955262_119955536_119955610_119955672_119956213_119956378_119956463_119956642_119956736_119956880_119957519_119957595_119957746_119957865_119957955_119958064_119958771_119958974_119959523_119959627_119961114_119961232_119961310_119961437_119961617_119961729_119962184_119962362_119962702_119962886_119963235_119963331_119963663_119963801_119963948_119964071_119964566_119964685_119966389_119966537_119966914_119967029_119967744_119967867_119968152_119968268_119972069_119972165_119974621_119974816_119977477
ES_00011414	chr11	-	4034	16	NNC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_2	152.373430171478	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCGAGTCGAGTTGGTTT	5020	False	NA	-10	True	AATAAA	-14	NA	120042148	119995275	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr11_-_119996860_119997259_119997434_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ES_00011415	chr11	-	326	3	FSM	ENSMUSG00000062825.16	ENSMUST00000089616.6	326	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3397.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGTGCCAGGCATCTGC	NA	False	NA	NA	False	NA	NA	NA	120237803	120237207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120237285_120237462_120237645_120237736
ES_00011417	chr11	-	648	4	FSM	ENSMUSG00000025134.3	ENSMUST00000155325.2	648	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	2034.47459774972	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTGTCTGGTCCATC	7014	False	NA	-7	True	AATAAA	-19	NA	120486483	120485334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486433
ES_00011433	chr11	+	202	1	Intergenic	novelGene_444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATCTCACCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	5077123	5077325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_5077100_5077300
ES_00011435	chr11	+	1495	1	Intergenic	novelGene_464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCACTTGTGCCACAGA	NA	False	NA	NA	False	NA	NA	NA	8288057	8289552	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8288100_8289600
ES_00011436	chr11	+	872	1	Intergenic	novelGene_466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATAAAATTTTAAAACTT	NA	False	NA	NA	False	NA	NA	NA	8789854	8790726	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8789900_8790700
ES_00011437	chr11	+	299	1	Intergenic	novelGene_467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTAATTCAGAGCACATC	NA	False	NA	NA	False	NA	NA	NA	8791010	8791309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_8791000_8791300
ES_00011438	chr11	+	5437	1	Intergenic	novelGene_469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACACCTGCTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	9920866	9926303	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_9920900_9926300
ES_00011439	chr11	+	509	1	Intergenic	novelGene_474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAAGTAGGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	16205086	16205595	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_16205100_16205600
ES_00011440	chr11	+	214	1	Intergenic	novelGene_483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTCATGTTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	20171907	20172121	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_20171900_20172100
ES_00011441	chr11	+	205	1	Intergenic	novelGene_488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTAGCTCTCAAATCATTT	NA	False	NA	NA	False	NA	NA	NA	23047474	23047679	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_23047500_23047700
ES_00011442	chr11	+	306	1	Intergenic	novelGene_500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	695	False	NA	NA	False	NA	NA	NA	27927736	27928042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_27927700_27928000
ES_00011443	chr11	+	213	1	Intergenic	novelGene_505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGTGAAAAAAAAAATCTAAA	NA	False	NA	NA	False	GATAAA	-5	NA	30606605	30606818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_30606600_30606800
ES_00011444	chr11	+	201	1	Intergenic	novelGene_509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTGAGGAGAAAGGGTC	NA	False	NA	NA	False	NA	NA	NA	32122675	32122876	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_32122700_32122900
ES_00011445	chr11	+	215	1	Intergenic	novelGene_521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTCTCAAGTATTATGAC	NA	False	NA	NA	False	NA	NA	NA	35973308	35973523	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_35973300_35973500
ES_00011446	chr11	+	770	1	Intergenic	novelGene_522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTGTCCCTTTATGA	NA	False	NA	NA	False	AATGAA	-19	NA	41033609	41034379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_41033600_41034400
ES_00011447	chr11	+	209	1	Intergenic	novelGene_536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTGTTGGCTATAACT	NA	False	NA	NA	False	NA	NA	NA	51168428	51168637	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_51168400_51168600
ES_00011448	chr11	+	220	1	Intergenic	novelGene_538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGAGAGCTATAGAAGT	NA	False	NA	NA	False	NA	NA	NA	51981845	51982065	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_51981800_51982100
ES_00011449	chr11	+	274	1	Intergenic	novelGene_539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAGATTGAATATACTCA	831	False	NA	NA	False	NA	NA	NA	52247386	52247660	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_52247400_52247700
ES_00011450	chr11	+	203	1	Intergenic	novelGene_541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAGTTTTTAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	52434704	52434907	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_52434700_52434900
ES_00011451	chr11	+	201	1	Intergenic	novelGene_542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATAAATAAACAAAGCAACA	NA	False	NA	NA	False	NA	NA	NA	52653171	52653372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_52653200_52653400
ES_00011453	chr11	+	242	1	Intergenic	novelGene_551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	380	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGGTTTTTCAAGAC	4660	False	NA	NA	False	NA	NA	NA	53572054	53572296	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_53572100_53572300
ES_00011454	chr11	+	223	1	Intergenic	novelGene_564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTAAAACTTAAGAGCAAG	1795	False	NA	NA	False	NA	NA	NA	57809126	57809349	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_57809100_57809300
ES_00011455	chr11	+	208	1	Intergenic	novelGene_569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCACCCATTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	59872729	59872937	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_59872700_59872900
ES_00011456	chr11	+	715	1	Intergenic	novelGene_575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATTTGAGTCCCACACA	9644	False	NA	NA	False	NA	NA	NA	62291156	62291871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_62291200_62291900
ES_00011458	chr11	+	211	1	Intergenic	novelGene_588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACACCTCTAATCCCAGC	NA	False	NA	NA	False	NA	NA	NA	69486924	69487135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_69486900_69487100
ES_00011459	chr11	+	223	1	Intergenic	novelGene_596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCCCCGGCTGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	70372584	70372807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_70372600_70372800
ES_00011460	chr11	+	274	1	Intergenic	novelGene_600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAATCCAAGTTTAAAA	9352	False	NA	NA	False	NA	NA	NA	70980508	70980782	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_70980500_70980800
ES_00011461	chr11	+	245	1	Intergenic	novelGene_604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTGTAATCCCAGCACT	4826	False	NA	NA	False	NA	NA	NA	72446189	72446434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_72446200_72446400
ES_00011462	chr11	+	210	1	Intergenic	novelGene_616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCACATGCCATTAATCCCA	2785	False	NA	NA	False	NA	NA	NA	75418433	75418643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75418400_75418600
ES_00011463	chr11	+	224	1	Intergenic	novelGene_618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTGCAATATCCAGTC	1174	False	NA	NA	False	NA	NA	NA	75600075	75600299	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_75600100_75600300
ES_00011464	chr11	+	201	1	Intergenic	novelGene_633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGACATGGTGTGCGTGA	8128	False	NA	NA	False	NA	NA	NA	78202941	78203142	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_78202900_78203100
ES_00011465	chr11	+	205	1	Intergenic	novelGene_642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCGGTGGTTTATGGAG	NA	False	NA	NA	False	AATGAA	-2	NA	79589608	79589813	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_79589600_79589800
ES_00011466	chr11	+	244	1	Intergenic	novelGene_649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	79930167	79930411	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_79930200_79930400
ES_00011467	chr11	+	254	1	Intergenic	novelGene_653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	7872	False	NA	NA	False	NA	NA	NA	80149705	80149959	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80149700_80150000
ES_00011468	chr11	+	209	1	Intergenic	novelGene_655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTCTGTTTCTTGAGAC	3787	False	NA	NA	False	NA	NA	NA	80177200	80177409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80177200_80177400
ES_00011469	chr11	+	464	1	Intergenic	novelGene_658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTGCCTCAATTTCCCA	NA	False	NA	NA	False	NA	NA	NA	80357104	80357568	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_80357100_80357600
ES_00011470	chr11	+	270	1	Intergenic	novelGene_662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATTAAACTTTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	82723095	82723365	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_82723100_82723400
ES_00011472	chr11	+	206	1	Intergenic	novelGene_666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTGTACTACTCATA	NA	False	NA	NA	False	NA	NA	NA	84606018	84606224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_84606000_84606200
ES_00011473	chr11	+	321	1	Intergenic	novelGene_667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAAGAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	84866539	84866860	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_84866500_84866900
ES_00011474	chr11	+	202	1	Intergenic	novelGene_685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGGTTTTTTAATGATT	3397	False	NA	NA	False	NA	NA	NA	87436636	87436838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_87436600_87436800
ES_00011475	chr11	+	210	1	Intergenic	novelGene_690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGGGCACCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	94799484	94799694	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_94799500_94799700
ES_00011476	chr11	+	222	1	Intergenic	novelGene_695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCCCATCAACCACATGA	NA	False	NA	NA	False	NA	NA	NA	95500469	95500691	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95500500_95500700
ES_00011477	chr11	+	208	1	Intergenic	novelGene_700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGTGCCTTTTCAAGTCA	4193	False	NA	NA	False	NA	NA	NA	95841987	95842195	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_95842000_95842200
ES_00011478	chr11	+	208	1	Intergenic	novelGene_707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	359	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTAATCCCAGCACTCG	9738	False	NA	NA	False	NA	NA	NA	96648922	96649130	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_96648900_96649100
ES_00011479	chr11	+	205	1	Intergenic	novelGene_717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGCCAACCAGAGTGAGCA	NA	False	NA	NA	False	NA	NA	NA	97485968	97486173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97486000_97486200
ES_00011480	chr11	+	218	1	Intergenic	novelGene_719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAACAAAAAACACCCG	NA	False	NA	NA	False	NA	NA	NA	97537570	97537788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_97537600_97537800
ES_00011482	chr11	+	204	1	Intergenic	novelGene_728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGTCCTTGAACGTACA	NA	False	NA	NA	False	NA	NA	NA	98100703	98100907	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_98100700_98100900
ES_00011483	chr11	+	294	1	Intergenic	novelGene_731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTACAATTCTTAAGA	NA	False	NA	NA	False	NA	NA	NA	100192953	100193247	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_100193000_100193200
ES_00011484	chr11	+	201	1	Intergenic	novelGene_733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCAGCC	7335	False	NA	NA	False	NA	NA	NA	100214088	100214289	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_100214100_100214300
ES_00011485	chr11	+	288	1	Intergenic	novelGene_747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCAAGTTCCAGGACAGT	NA	False	NA	NA	False	NA	NA	NA	102216343	102216631	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_102216300_102216600
ES_00011486	chr11	+	248	1	Intergenic	novelGene_755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTGCTCTCTTGGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	104464546	104464794	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_104464500_104464800
ES_00011487	chr11	+	295	1	Intergenic	novelGene_756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTCTTGAGACTCTGT	NA	False	NA	NA	False	NA	NA	NA	105051751	105052046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_105051800_105052000
ES_00011488	chr11	+	275	1	Intergenic	novelGene_757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAACATTGAAGATGCTT	NA	False	NA	NA	False	NA	NA	NA	105066049	105066324	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_105066000_105066300
ES_00011489	chr11	+	202	1	Intergenic	novelGene_781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCATTCTTCTTAATG	NA	False	NA	NA	False	NA	NA	NA	110095075	110095277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_110095100_110095300
ES_00011490	chr11	+	212	1	Intergenic	novelGene_785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATAGCCGAGACCAGGC	4857	False	NA	NA	False	GATAAA	-7	NA	115194459	115194671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115194500_115194700
ES_00011491	chr11	+	215	1	Intergenic	novelGene_786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTGGATTTTCAAGACA	4515	False	NA	NA	False	NA	NA	NA	115281940	115282155	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115281900_115282200
ES_00011492	chr11	+	207	1	Intergenic	novelGene_795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTTTAAATACGCATA	1160	False	NA	NA	False	NA	NA	NA	115984000	115984207	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_115984000_115984200
ES_00011493	chr11	+	212	1	Intergenic	novelGene_797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTTTATTTTTATTAT	NA	False	NA	NA	False	AATAAA	-6	NA	116527590	116527802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_116527600_116527800
ES_00011494	chr11	+	222	1	Intergenic	novelGene_805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGCTCTTCCGAAGG	5580	False	NA	NA	False	AATAAA	-39	NA	119481631	119481853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr11_+_119481600_119481900
ES_00011495	chr12	+	3053	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	-2241	0	-2219	0	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3283284	3288273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
ES_00011496	chr12	+	4006	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAGCTCTTACTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	3285503	3291410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
ES_00011497	chr12	+	2467	6	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-393	6822	-4	1712	5prime_fragment	FALSE	canonical	3	23	junction_5	69.4682661364166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAGACTGTTTCATTCA	NA	False	NA	NA	False	ATTAAA	-19	NA	3285521	3293122	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521
ES_00011499	chr12	+	6791	8	FSM	ENSMUSG00000020668.11	ENSMUST00000020999.7	6791	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	14.4066311262614	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTTGCCTGCTTCTCTC	NA	False	NA	NA	False	AATAAA	-21	NA	3415189	3456494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ES_00011500	chr12	+	2300	11	NIC	ENSMUSG00000037486.19	novel	1483	12	NA	NA	-20	-4	combination_of_known_splicesites	FALSE	canonical	3	29	junction_2	15.7419820861288	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGAACTGCTTTCCTAT	NA	False	NA	NA	False	AATAAA	-17	NA	3476836	3547057	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_3477213_3492473_3492557_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
ES_00011501	chr12	+	8787	12	NNC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	202	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	23.8760573734961	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGATGAATCTGGAGAT	NA	False	NA	NA	False	NA	NA	NA	3477113	3556860	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_3477213_3492473_3492557_3501658_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
ES_00011502	chr12	+	375	1	FSM	ENSMUSG00000118499.2	ENSMUST00000239031.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACAGGGTTTCTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	3488514	3488889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3488500_3488900
ES_00011503	chr12	+	5561	3	FSM	ENSMUSG00000037486.19	ENSMUST00000152196.2	5561	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	20.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	3543760	3554748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3543840_3546224_3546937_3549978
ES_00011504	chr12	+	200	1	Intergenic	novelGene_811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACGAGGTATTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	3594318	3594518	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_3594300_3594500
ES_00011505	chr12	+	204	2	Intergenic	novelGene_813	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGACACAAAACAGTCTT	NA	False	NA	NA	False	NA	NA	NA	3604686	3619896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_3604737_3619742
ES_00011506	chr12	+	3690	7	FSM	ENSMUSG00000071454.14	ENSMUST00000174479.8	3689	7	-1	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	135.946067737663	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGACACTTGTTTATATG	NA	False	NA	NA	False	AATAAA	-16	NA	3622432	3696787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916
ES_00011507	chr12	+	2390	20	FSM	ENSMUSG00000071454.14	ENSMUST00000164607.9	2390	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	90.3998198218487	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGTGTTCCTTCCG	NA	False	NA	27	True	AAAAAG	-7	NA	3622432	3831398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
ES_00011508	chr12	+	2343	19	NIC	ENSMUSG00000071454.14	novel	2381	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	85.0941562746747	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGTGTGTGTTCCTT	NA	False	NA	24	True	AAAAAG	-4	NA	3622435	3831395	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3829618_3829655_3831105
ES_00011509	chr12	+	2428	21	FSM	ENSMUSG00000071454.14	ENSMUST00000101637.11	2428	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	122.213706268978	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTATGCAAAGAAAGCTGC	NA	False	NA	NA	False	NA	NA	NA	3622522	3831505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
ES_00011511	chr12	+	9751	23	FSM	ENSMUSG00000020661.16	ENSMUST00000020991.15	9685	23	-68	2	-68	-2	multi-exon	FALSE	canonical	2	37	junction_5	34.649842283161	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTTTTTGTATTTTTTT	558	False	NA	4	True	NA	NA	NA	3856961	3964441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3857121_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ES_00011512	chr12	+	2315	18	FSM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	13	0	-3	0	multi-exon	FALSE	canonical	3	65	junction_1	19.4274446476198	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGAGAAAAGTTCAGCA	NA	False	NA	NA	False	NA	NA	NA	3941740	3957842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3941861_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ES_00011513	chr12	+	641	1	ISM	ENSMUSG00000020660.7	ENSMUST00000020990.7	1031	3	5031	20	5012	4	mono-exon	FALSE	NA	NA	NA	NA	NA	494	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAACTGTCCAGTTACACT	NA	False	NA	61	True	AATAAA	-23	NA	4009981	4010622	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_4010000_4010600
ES_00011514	chr12	+	4691	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	7	0	7	0	multi-exon	FALSE	canonical	3	25	junction_5	5.84284938098603	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTGCTGGCTGCAT	NA	False	NA	8	True	AGTAAA	-14	NA	4132589	4160606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
ES_00011515	chr12	+	4831	22	NIC	ENSMUSG00000020654.16	novel	4962	22	NA	NA	-15	-149	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	14.8737696951146	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTTTTAACCTGTTCAA	NA	False	NA	NA	False	TATAAA	-16	NA	4183087	4263375	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_4183720_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ES_00011516	chr12	+	5089	22	FSM	ENSMUSG00000020654.16	ENSMUST00000152065.8	4728	22	-362	1	-68	0	multi-exon	FALSE	canonical	3	14	junction_1	15.9929122623238	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183034	4263524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4183779_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ES_00011517	chr12	+	4348	21	FSM	ENSMUSG00000020654.16	ENSMUST00000020984.9	4348	21	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_14	11.273863579093	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4184152	4263524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ES_00011518	chr12	+	3840	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCATTACCTAAAATAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	4284026	4289950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4284279_4286362
ES_00011519	chr12	+	820	6	FSM	ENSMUSG00000020640.11	ENSMUST00000218402.2	851	6	31	0	31	0	multi-exon	FALSE	canonical	3	9	junction_1	32.5023076103836	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGCCTTTATCCATTCC	7047	False	NA	NA	False	NA	NA	NA	4642668	4679717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4642932_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544
ES_00011520	chr12	+	5987	39	FSM	ENSMUSG00000020640.11	ENSMUST00000062580.8	5987	39	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_33	12.8594576467878	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTTTCAAAGCTTGACT	7386	False	NA	NA	False	AATAAA	-20	NA	4643007	4763950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4747141_4747264_4750319_4750427_4751181_4751366_4756259_4756359_4756964_4757133_4757529_4757746_4758112_4758235_4758944_4759028_4761952_4762037_4762466_4762641_4763039
ES_00011522	chr12	+	6397	24	NIC	ENSMUSG00000020640.11	novel	5804	33	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_23	18.1714165125296	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTGTATTGTGTATTTC	NA	False	NA	15	True	ATTAAA	-16	NA	4679548	4729503	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4726210
ES_00011523	chr12	+	5428	18	FSM	ENSMUSG00000020640.11	ENSMUST00000217672.2	5431	18	0	3	0	-3	multi-exon	FALSE	canonical	3	13	junction_17	20.8623765263035	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTGTATTGTGTATTTC	NA	False	NA	15	True	ATTAAA	-16	NA	4684775	4729503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4726210
ES_00011527	chr12	+	454	2	FSM	ENSMUSG00000037361.9	ENSMUST00000218650.2	455	2	1	0	1	0	multi-exon	FALSE	canonical	3	1039	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTTAAACTTCTCAC	NA	False	NA	35	True	AATAAA	-25	NA	4876695	4877266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4876897_4877013
ES_00011529	chr12	+	2898	2	FSM	ENSMUSG00000051721.7	ENSMUST00000053034.6	2892	2	-6	0	-6	0	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAACTATTAG	NA	False	NA	NA	False	NA	NA	NA	4893340	4902913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4893452_4900126
ES_00011530	chr12	+	4293	4	FSM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	24	0	-1	0	multi-exon	FALSE	canonical	3	7	junction_3	4.49691252107735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGCTCTCACACGTTT	NA	False	NA	2	True	AATAAA	-15	NA	4893326	4910043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4907806
ES_00011531	chr12	+	3302	5	NNC	ENSMUSG00000051721.7	novel	4317	4	NA	NA	20	-1279	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	29.2264862752949	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGGGAGTGCCAATGAT	NA	False	NA	NA	False	AATAAA	-17	NA	4893366	4908764	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_4893452_4898862_4899191_4900126_4901943_4905277_4905393_4907806
ES_00011532	chr12	+	8086	28	NNC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	-15	9	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_21	27.6289345558485	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGCATGATTGTGAGTA	NA	False	NA	16	True	AATAAA	-24	NA	4967337	5097403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5063985_5067982_5068143_5074581_5074705_5077042_5077181_5081492_5082177_5084032_5084161_5084467_5084597_5094005
ES_00011533	chr12	+	1487	10	FSM	ENSMUSG00000052812.6	ENSMUST00000218303.2	1824	10	0	337	0	-337	multi-exon	FALSE	canonical	3	154	junction_4	13.5737582702893	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTCTAAATGTTTCCC	NA	False	NA	NA	False	GATAAA	-4	NA	4967406	5004657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545
ES_00011534	chr12	+	2798	16	NNC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	22	16113	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_15	43.646254771235	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGTGTTCAGTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	4967428	5021107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5020405
ES_00011535	chr12	+	8043	28	NIC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	0	20	combination_of_known_junctions	FALSE	canonical	3	118	junction_21	18.2748412215681	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTATTGTTGGCTTC	NA	False	NA	27	True	AATAAA	-35	NA	4967406	5097414	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5064000_5067982_5068143_5074581_5074705_5077042_5077181_5081492_5082177_5084032_5084161_5084467_5084597_5094005
ES_00011539	chr12	+	2749	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	188	junction_5	23.7533623350932	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258106	8335759	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ES_00011541	chr12	+	1130	6	FSM	ENSMUSG00000037669.16	ENSMUST00000218086.2	1159	6	0	29	0	-21	multi-exon	FALSE	canonical	3	35	junction_1	78.8958807543208	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTTTGAAATATAATAAT	NA	False	NA	NA	False	AATAAA	-5	NA	8258144	8326181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807
ES_00011544	chr12	+	6253	21	NNC	ENSMUSG00000020594.15	novel	6311	21	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_11	42.2828570463255	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTATATCTCTGTC	NA	False	NA	18	True	AATAAA	-30	NA	8724278	8802561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778858_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ES_00011548	chr12	+	3157	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTGTACTTGTGCAG	NA	False	NA	NA	False	AATAAA	-28	NA	8821322	8843715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
ES_00011549	chr12	+	1776	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	-8	5	-8	-5	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGTGCCTCATGTTTA	NA	False	NA	33	True	AATAAA	-24	NA	8971655	8988737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ES_00011550	chr12	+	2169	6	NIC	ENSMUSG00000020583.5	novel	3014	8	NA	NA	58	-535	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	9.72419662491457	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCATGGTTGATGTTTTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	8997986	9021493	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9017628_9017740_9020519
ES_00011552	chr12	+	4312	27	FSM	ENSMUSG00000066643.13	ENSMUST00000111113.3	4312	27	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	11.1856972283898	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAGTAATGCTGTAGT	NA	False	NA	7	True	AATAAA	-14	NA	9024046	9078846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
ES_00011553	chr12	+	811	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	-20	209	-20	-209	multi-exon	FALSE	canonical	3	121	junction_2	13	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATTCCCAACTTTGTA	NA	False	NA	19	True	AGTAAA	-21	NA	9079976	9086185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_9080197_9084921_9085089_9085761
ES_00011555	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440771	10445562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_10441227_10444537
ES_00011558	chr12	+	3397	10	FSM	ENSMUSG00000020608.8	ENSMUST00000218866.2	3373	10	-24	0	0	0	multi-exon	FALSE	canonical	3	624	junction_2	43.5943704599856	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTATGTCATTGTGGGT	4536	False	NA	NA	False	TATAAA	-20	NA	11316105	11337655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311
ES_00011562	chr12	+	1795	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	-24	0	14	0	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGGTTTGTGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	12312153	12423396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ES_00011563	chr12	+	7676	13	FSM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	14	1762	14	-1762	multi-exon	FALSE	canonical	3	12	junction_2	32.1829621936135	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGCAACAAAAACAAAAAG	NA	False	NA	NA	False	NA	NA	NA	12312153	12429204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_12312240_12326343_12326417_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ES_00011566	chr12	+	7247	52	NNC	ENSMUSG00000020576.11	novel	7234	52	NA	NA	-15	3	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_19	10.6193442780164	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATGCCCTTTGAGTACT	NA	False	NA	NA	False	AATAAA	-23	NA	13319118	13633807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491859_13491948_13503053_13503131_13503485_13503624_13519841_13520072_13524127_13524239_13532386_13532638_13533710_13534046_13563370_13563590_13568945_13569149_13570695_13570786_13584380_13584577_13608612_13608753_13610837_13610977_13616129_13616259_13633391
ES_00011568	chr12	+	2426	7	FSM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	-8	0	0	0	multi-exon	FALSE	canonical	2	127	junction_1	56.1505911713215	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7402	False	NA	4	True	ATTAAA	-15	NA	16860969	16876753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
ES_00011569	chr12	+	2362	8	FSM	ENSMUSG00000057469.9	ENSMUST00000221541.2	2362	8	0	0	0	0	multi-exon	FALSE	canonical	2	121	junction_1	60.8859757318245	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7532	False	NA	4	True	ATTAAA	-15	NA	16861099	16876753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_16861317_16863847_16863914_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
ES_00011573	chr12	+	2006	11	FSM	ENSMUSG00000020571.14	ENSMUST00000162936.8	1986	11	-20	0	-20	0	multi-exon	FALSE	canonical	3	2590	junction_6	177.381199680237	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTAGAGTTTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	17316525	17331811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911
ES_00011576	chr12	+	3041	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	-20	0	-20	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398438	17480096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
ES_00011579	chr12	+	1526	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8624	False	NA	17	True	AATAAA	-5	NA	17740856	17841934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
ES_00011582	chr12	+	2782	4	Fusion	ENSMUSG00000113294.2_ENSMUSG00000114025.2	novel	1214	3	NA	NA	-688	-507	intron_retention	FALSE	canonical	3	43	junction_1	46.5999523128035	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAATTCTA	NA	False	NA	3	True	NA	NA	NA	17931509	17954169	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_17932324_17950660_17950788_17950987_17951049_17952389
ES_00011584	chr12	+	2090	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10203	-508	intron_retention	FALSE	canonical	3	46	junction_1	45.4190366354119	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATACTGGAGAGAAATTCT	NA	False	NA	2	True	NA	NA	NA	17942186	17954168	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17952389
ES_00011597	chr12	+	354	4	Intergenic	novelGene_840	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_3	34.2150064542836	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCATGTCCCAGTCAT	NA	False	NA	NA	False	NA	NA	NA	19116403	19125146	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_19116514_19123371_19123499_19123700_19123762_19125090
ES_00011599	chr12	+	3906	4	Fusion	ENSMUSG00000113570.2_ENSMUSG00000113959.2_ENSMUSG00000073184.5	novel	241	3	NA	NA	0	765	multi-exon	FALSE	non_canonical	0	0	junction_1	12.2474487139159	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGTTGTTGTTGCAG	NA	False	NA	22	True	AATAAA	-23	NA	19338562	19355957	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_19338926_19350882_19351012_19351214_19351276_19352604
ES_00011600	chr12	+	3123	4	Fusion	ENSMUSG00000113570.2_ENSMUSG00000073184.5	novel	241	3	NA	NA	0	9913	multi-exon	FALSE	non_canonical	0	0	junction_1	12.9614813968157	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGGCTCCATGCTTAAG	NA	False	NA	NA	False	NA	NA	NA	19338562	19361178	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_19338926_19350882_19351012_19351214_19351276_19358608
ES_00011604	chr12	+	3241	1	FSM	ENSMUSG00000113959.2	ENSMUST00000222720.2	3539	1	301	-3	301	3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	19351954	19355195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_19352000_19355200
ES_00011608	chr12	+	406	4	NNC	ENSMUSG00000113957.2	novel	232	2	NA	NA	-57	2890	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	20.704266871026	352	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTAATGAACGTTCCAAA	NA	False	NA	NA	False	NA	NA	NA	19656872	19675976	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_19657056_19674223_19674351_19674551_19674613_19675941
ES_00011609	chr12	+	693	4	Genic_Genomic	ENSMUSG00000095470.2	novel	336	1	NA	NA	-228	20677	multi-exon	FALSE	canonical	0	0	junction_1	2.35702260395516	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGTCATCTTCAATATCA	NA	False	NA	NA	False	NA	NA	NA	20004277	20025518	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_20004632_20023640_20023768_20023969_20024031_20025367
ES_00011610	chr12	+	3500	4	Genic_Genomic	ENSMUSG00000113901.2	novel	130	1	NA	NA	-392	14950	multi-exon	FALSE	canonical	1	2	junction_3	16.539514973407	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACTTTTTACAACTTTA	NA	False	NA	NA	False	NA	NA	NA	20121490	20136962	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_20122009_20132442_20132570_20132771_20132833_20134168
ES_00011613	chr12	+	3266	4	Genic_Genomic	ENSMUSG00000113964.2	novel	139	1	NA	NA	-342	48862	multi-exon	FALSE	canonical	3	38	junction_1	8.73053390247253	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTCTCCATTATTTTTA	NA	False	NA	6	True	NA	NA	NA	20246574	20295917	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_20247044_20291589_20291717_20291916_20291978_20293308
ES_00011615	chr12	+	976	6	Fusion	ENSMUSG00000116558.2_ENSMUSG00000116715.2	novel	883	3	NA	NA	0	-497	multi-exon	FALSE	non_canonical	0	0	junction_5	4.35430821141545	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCAATGTGGTAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	20362515	20372299	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_20362642_20363533_20363653_20369605_20369733_20369934_20369996_20371336_20371747_20372166
ES_00011616	chr12	+	2133	5	Fusion	ENSMUSG00000116558.2_ENSMUSG00000116715.2	novel	883	3	NA	NA	0	779	multi-exon	FALSE	non_canonical	0	0	junction_4	22.2977016752848	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACAAGACAAACCACTAG	NA	False	NA	NA	False	NA	NA	NA	20362515	20373575	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_20362642_20369605_20369733_20369934_20369996_20371336_20371747_20372166
ES_00011623	chr12	+	2499	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGTGCCACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	21336358	21365057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
ES_00011624	chr12	+	1001	8	FSM	ENSMUSG00000054309.10	ENSMUST00000221145.2	1001	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	361.456464197563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATTTGGGTGCCTTGGAT	NA	False	NA	NA	False	NA	NA	NA	21336399	21347939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21336546_21336805_21336952_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789
ES_00011626	chr12	+	6124	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	-21	-4213	4	1752	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCTTGATGATGCGAACA	NA	False	NA	NA	False	NA	NA	NA	21366393	21375572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
ES_00011630	chr12	+	343	3	FSM	ENSMUSG00000109975.2	ENSMUST00000210709.2	321	3	-22	0	-22	0	multi-exon	FALSE	canonical	3	112	junction_2	13	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGTTCTTAAAGTCAAG	6078	False	NA	NA	False	AATAAA	-23	NA	21593285	21600058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21593347_21595309_21595401_21599867
ES_00011632	chr12	+	452	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGACAAAGGCGTTTTTT	6109	False	NA	NA	False	ACTAAA	-18	NA	21593316	21604522	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
ES_00011636	chr12	+	209	1	Intergenic	novelGene_861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCAGAAAATGACAACAGCT	NA	False	NA	NA	False	NA	NA	NA	23681804	23682013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23681800_23682000
ES_00011643	chr12	+	2130	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	-276	-14	-5	14	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATTCATTGTATTTTAA	NA	False	NA	26	True	ATTAAA	-35	NA	24548352	24608552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ES_00011644	chr12	+	553	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	-32	0	-32	0	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	24548577	24559747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
ES_00011645	chr12	+	1502	12	FSM	ENSMUSG00000059669.9	ENSMUST00000223503.2	1484	12	-18	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	27.2065864655498	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTCCCCGTTTTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	24548609	24599724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417
ES_00011653	chr12	+	7086	29	NNC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	7	-192	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	9.91340053685321	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAATTCCCATTCTGATT	NA	False	NA	37	True	NA	NA	NA	25024934	25109504	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040671_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580
ES_00011656	chr12	+	3165	5	FSM	ENSMUSG00000020638.9	ENSMUST00000020969.5	3200	5	34	1	34	-1	multi-exon	FALSE	canonical	2	4	junction_3	0.433012701892219	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGTTCGTCATCATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	26519236	26529835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_26520026_26521404_26521520_26523994_26524197_26527004_26527239_26528010
ES_00011662	chr12	+	1747	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1150	False	NA	7	True	NA	NA	NA	28801853	28917490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ES_00011666	chr12	+	2978	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	-7	0	-7	0	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634417	30641214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
ES_00011667	chr12	+	2931	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	92	junction_5	34.3941855551196	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634443	30641214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640574_30640594
ES_00011668	chr12	+	2564	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	81	junction_5	38.6812616133445	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634456	30641214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640423_30640797
ES_00011671	chr12	+	5845	33	FSM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	-67	0	-7	0	multi-exon	FALSE	canonical	3	88	junction_13	20.6626313894794	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATCCTATGTTTCTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	31315225	31379638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
ES_00011673	chr12	+	2582	22	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	11	11789	11	-181	5prime_fragment	FALSE	canonical	3	60	junction_7	21.3659402170966	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACCTCCAGCACTTTTT	NA	False	NA	NA	False	ACTAAA	-33	NA	31704878	31975840	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643
ES_00011678	chr12	+	2019	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8425	False	NA	NA	False	AATAAA	-7	NA	33004182	33026903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
ES_00011685	chr12	+	1002	6	ISM	ENSMUSG00000020590.17	ENSMUST00000221272.2	2027	18	72	31019	41	1	5prime_fragment	FALSE	canonical	0	0	junction_2	41.8922427186705	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTGTTTAATTTATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35097256	35141968	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_35097411_35128898_35129012_35135937_35136028_35136861_35136984_35141361_35141484_35141567
ES_00011700	chr12	+	433	3	ISM	ENSMUSG00000056899.11	ENSMUST00000134965.8	977	6	601218	-1	557235	1	3prime_fragment	FALSE	canonical	3	213	junction_2	12	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGTGTGTTGTATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	41675545	42002026	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_41675613_41750437_41750541_42001763
ES_00011701	chr12	+	1629	1	FSM	ENSMUSG00000112795.2	ENSMUST00000217877.2	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTTGCATGCTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	44268527	44270156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_44268500_44270200
ES_00011703	chr12	+	3001	9	NIC	ENSMUSG00000036257.16	novel	13507	10	NA	NA	48	-55	combination_of_known_junctions	FALSE	canonical	1	8	junction_7	85.1952720225718	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTGTTCAAGGCTAATG	NA	False	NA	8	True	AATAAA	-13	NA	44315997	44359071	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44354701_44354898_44358107
ES_00011705	chr12	+	460	1	FSM	ENSMUSG00000112908.2	ENSMUST00000217815.2	345	1	-22	-93	-22	93	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAATGTGGTACATCTA	NA	False	NA	NA	False	AATAAA	-43	NA	47859665	47860125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_47859700_47860100
ES_00011709	chr12	+	2939	16	FSM	ENSMUSG00000035293.14	ENSMUST00000119211.8	2926	16	-13	0	-13	0	multi-exon	FALSE	canonical	3	11	junction_11	51.696120636745	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCTCATAAATCAGAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	51395057	51420050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51410734_51410804_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
ES_00011712	chr12	+	2809	14	FSM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	-56	-4	14	4	multi-exon	TRUE	canonical	3	21	junction_13	120.151925523899	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTTTTTAAGATTTATT	NA	False	NA	NA	False	ATTAAA	-19	NA	51424306	51464002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462405
ES_00011713	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_5	42.0133700610757	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	15	True	AATAAA	-15	NA	51424362	51496884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
ES_00011715	chr12	+	1074	6	FSM	ENSMUSG00000020955.10	ENSMUST00000021338.10	1035	6	-39	0	-35	0	multi-exon	FALSE	canonical	3	33	junction_1	14.8458748479165	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTGACGTTTGAGTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	51737780	51785715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
ES_00011719	chr12	+	7086	7	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-13	818	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_1	83.7842798832547	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGTTACACTGACTTGT	NA	False	NA	8	True	ATTAAA	-17	NA	52550741	52616436	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_52550832_52562861_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ES_00011720	chr12	+	9768	7	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-35	-1	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	94.5879954798118	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATCCAAGTCTTTTTAAT	NA	False	NA	NA	False	AATACA	-11	NA	52550719	52618757	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_52551171_52562861_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ES_00011724	chr12	+	242	1	Intergenic	novelGene_896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAACCTCCAAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	54984662	54984904	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_54984700_54984900
ES_00011725	chr12	+	4498	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGGATGAAAGTCATGT	2576	False	NA	NA	False	NA	NA	NA	55127046	55162152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
ES_00011729	chr12	+	330	1	FSM	ENSMUSG00000113693.2	ENSMUST00000221509.2	405	1	75	0	75	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAATTTTGATTTTGTGT	NA	False	NA	NA	False	TATAAA	-14	NA	55199309	55199639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_55199300_55199600
ES_00011731	chr12	+	2172	17	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	0	46273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	237.221143858953	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAGTGAGGAAAACTCC	2620	False	NA	NA	False	NA	NA	NA	55202154	55282631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644_55235121_55282601
ES_00011737	chr12	+	2195	8	NIC	ENSMUSG00000021023.15	novel	2250	8	NA	NA	-2	-2	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	145.251365513972	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTTTAGTTGGTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	55350068	55429279	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_55350123_55350400_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
ES_00011742	chr12	+	2124	4	FSM	ENSMUSG00000047022.19	ENSMUST00000153755.8	1856	4	-43	-225	-43	225	multi-exon	FALSE	canonical	3	69	junction_1	7.34846922834953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTGTTCTTATTAGTA	NA	False	NA	NA	False	AATACA	-18	NA	57277169	57355706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144
ES_00011743	chr12	+	1168	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	-9	9	0	-9	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTAAAGCATACATTGTAT	NA	False	NA	NA	False	NA	NA	NA	57277212	57372852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
ES_00011744	chr12	+	3970	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	36	-2286	36	2286	multi-exon	FALSE	canonical	3	317	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	16	True	ATTAAA	-20	NA	57277233	57288954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_57277398_57285148
ES_00011746	chr12	+	1946	10	FSM	ENSMUSG00000060121.16	ENSMUST00000182188.8	1946	10	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	336.207607819269	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCATACAGATGAAATGGC	NA	False	NA	NA	False	AATAAA	-27	NA	59060239	59075185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_59060841_59062860_59062995_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ES_00011750	chr12	+	2806	23	FSM	ENSMUSG00000021000.18	ENSMUST00000170992.9	2785	23	-21	0	-21	0	multi-exon	FALSE	canonical	3	90	junction_4	87.8376248945031	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTGTTTGGTATTAA	NA	False	NA	7	True	AATAAA	-15	NA	59178217	59236959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
ES_00011755	chr12	+	2034	3	FSM	ENSMUSG00000047227.6	ENSMUST00000220928.2	598	3	-15	-1421	-15	1421	multi-exon	FALSE	canonical	2	5	junction_1	12.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTATAGATAGTCTCCC	193	False	NA	NA	False	AATAAA	-16	NA	64969497	64972787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_64969543_64970280_64970416_64970933
ES_00011757	chr12	+	6386	21	FSM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	35.8941499411812	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGACAGGTGTCCTA	NA	False	NA	9	True	AATAAA	-17	NA	65012713	65069347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ES_00011759	chr12	+	2899	14	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	0	-426	intron_retention	FALSE	canonical	3	89	junction_3	99.633945404782	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATTAATTGGTCTAGA	7540	False	NA	NA	False	NA	NA	NA	65083139	65108503	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_65083243_65089234_65089582_65090005_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ES_00011762	chr12	+	11922	23	FSM	ENSMUSG00000055884.9	ENSMUST00000222540.2	7816	23	-10	-4096	-7	4096	multi-exon	TRUE	canonical	3	18	junction_11	37.5989328580761	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTGACTGCTCTTTCGA	9273	False	NA	NA	False	ACTAAA	-45	NA	65122369	65182928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148293_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
ES_00011764	chr12	+	7951	24	NNC	ENSMUSG00000055884.9	novel	7775	23	NA	NA	438	4013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	38.8494744303712	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGGCCCCTATGTTTGG	9722	False	NA	NA	False	NA	NA	NA	65122818	65182845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048_65178647_65182044
ES_00011767	chr12	+	2001	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	227	0	23	0	multi-exon	FALSE	canonical	3	6	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATGACCTCTTTGTTTC	NA	False	NA	NA	False	AATAAA	-19	NA	65272517	65275228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_65274272_65274981
ES_00011776	chr12	+	1905	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	0	0	0	0	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACTTTTTATCCCACG	NA	False	NA	NA	False	NA	NA	NA	69343495	69357461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
ES_00011779	chr12	+	1616	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	-19	2	-19	0	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771704	69791432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ES_00011780	chr12	+	1502	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	-17	0	-5	0	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771718	69791432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ES_00011781	chr12	+	1369	4	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	90.3487071788462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771742	69791434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_69771789_69787672_69787882_69788418_69788591_69790492
ES_00011783	chr12	+	2015	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	2	-8	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATAAGTAAGTGAAGGCTA	NA	False	NA	-6	True	AATAAA	-6	NA	69771737	69791424	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ES_00011790	chr12	+	974	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	0	1872	0	0	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4720	False	NA	-25	True	NA	NA	NA	71021394	71041249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ES_00011791	chr12	+	1051	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	-50	26	0	0	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4720	False	NA	-25	True	NA	NA	NA	71021394	71041249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ES_00011792	chr12	+	580	7	FSM	ENSMUSG00000060073.10	ENSMUST00000162851.8	562	7	-18	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	1480.68865359632	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4770	False	NA	4	True	ATTAAA	-15	NA	71021444	71041278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71021542_71025506_71025590_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ES_00011793	chr12	+	1394	11	FSM	ENSMUSG00000060073.10	ENSMUST00000162626.8	1394	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1218.25789141708	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4770	False	NA	NA	False	NA	NA	NA	71021444	71041695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71021542_71025506_71025614_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ES_00011794	chr12	+	882	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	-7	0	0	0	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4807	False	NA	-25	True	NA	NA	NA	71021481	71041249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ES_00011800	chr12	+	5179	28	FSM	ENSMUSG00000034601.18	ENSMUST00000045907.16	4507	28	-676	4	316	-4	multi-exon	FALSE	canonical	3	73	junction_27	19.0025628189986	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTCTGGCTGTTTCTTA	NA	False	NA	18	True	AATAAA	-16	NA	71183937	71290073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71289717
ES_00011803	chr12	+	5816	25	NIC	ENSMUSG00000034574.11	novel	5835	26	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_1	18.350560088334	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATCTGTTTTCTAT	1789	False	NA	16	True	AATAAA	-16	NA	71877837	72039101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
ES_00011805	chr12	+	5951	25	NIC	ENSMUSG00000034574.11	novel	5879	26	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	21.2589441961103	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATCTGTTTTCTAT	1789	False	NA	16	True	AATAAA	-16	NA	71877837	72039101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_71878106_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
ES_00011807	chr12	+	1313	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	105	junction_1	195.113467772275	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132566	72147631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_72132683_72132721_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ES_00011808	chr12	+	1292	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCCCGAAAAGTATT	NA	False	NA	NA	False	TATAAA	-27	NA	72132630	72147635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ES_00011809	chr12	+	1874	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132630	72148235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ES_00011814	chr12	+	1028	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	1	37873	1	-37873	5prime_fragment	FALSE	canonical	3	96	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTATTTTGATGGTTAATC	NA	False	NA	NA	False	ATTAAA	-29	NA	72583157	72589020	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_72583314_72588148
ES_00011816	chr12	+	7668	6	FSM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_3	38.6336640768126	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGTGTGCTTATGATT	NA	False	NA	3	True	AATAAA	-14	NA	72807984	72846593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_72808406_72830456_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
ES_00011817	chr12	+	3900	3	FSM	ENSMUSG00000021096.12	ENSMUST00000223410.2	3900	3	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_1	26.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCACTAGAACCATGTAG	NA	False	NA	-63	True	NA	NA	NA	72808088	72836174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_72808406_72830456_72831311_72833445
ES_00011821	chr12	+	1922	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	-4	587	-4	550	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGGTGTGTGTTGGTC	NA	False	NA	NA	False	NA	NA	NA	73170486	73320175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ES_00011825	chr12	+	4642	15	NIC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_10	79.3247008394315	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8398	False	NA	11	True	AATAAA	-22	NA	73954717	73994304	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ES_00011826	chr12	+	4349	15	NNC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	336	0	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_1	110.208707385912	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8694	False	NA	11	True	AATAAA	-22	NA	73955013	73994304	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_73955099_73973327_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ES_00011828	chr12	+	1754	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	-59	4580	-14	279	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTTCTAGTGTGTGA	NA	False	NA	4	True	AATAAA	-16	NA	74011240	74031160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
ES_00011830	chr12	+	674	5	FSM	ENSMUSG00000063450.15	ENSMUST00000154762.2	682	5	8	0	8	0	multi-exon	FALSE	canonical	1	4	junction_3	2.27760839478607	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGACCAATGTAAAAAGAAA	1604	False	NA	NA	False	NA	NA	NA	76106455	76113290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76106601_76106924_76107020_76108361_76108597_76110866_76111062_76113286
ES_00011835	chr12	+	3041	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	0	-1	0	0	multi-exon	TRUE	canonical	3	9	junction_1	281.366814005612	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8026	False	NA	9	True	AATAAA	-17	NA	76302186	76366577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ES_00011839	chr12	+	818	1	FSM	ENSMUSG00000073000.4	ENSMUST00000220043.2	818	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCTCAGTCGTGGT	NA	False	NA	10	True	NA	NA	NA	76496471	76497289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76496500_76497300
ES_00011842	chr12	+	4952	18	FSM	ENSMUSG00000052609.10	ENSMUST00000219063.2	4535	18	-60	-357	0	0	multi-exon	FALSE	canonical	3	37	junction_13	11.6696157090046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCTGTGTGTGGCCTCCT	7224	False	NA	19	True	NA	NA	NA	76580333	76625813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618417_76618823_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
ES_00011843	chr12	+	4815	6	FSM	ENSMUSG00000052609.10	ENSMUST00000218427.2	4815	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	18.062115047801	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTATTATTGATTTATTA	NA	False	NA	12	True	AATAAA	-14	NA	76618323	76627262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76618417_76618820_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
ES_00011847	chr12	+	2222	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7622	-1	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGCTGTCTTTTTTTTTT	9967	False	NA	13	True	AATAAA	-14	NA	76948637	76968185	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ES_00011848	chr12	+	202	2	Antisense	novelGene_ENSMUSG00000112008.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	76951065	77038514	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_76951091_77038337
ES_00011851	chr12	+	3380	12	FSM	ENSMUSG00000021065.17	ENSMUST00000062804.8	3358	12	-22	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8022781360346	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGGTGGCATCT	NA	False	NA	NA	False	TATAAA	-13	NA	77285816	77523112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_77286028_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ES_00011857	chr12	+	5412	15	FSM	ENSMUSG00000021112.10	ENSMUST00000082024.7	5470	15	0	58	0	-58	multi-exon	FALSE	canonical	3	22	junction_1	32.6002378856977	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTCAGGATCAACACTG	NA	False	NA	86	True	NA	NA	NA	78795765	78887430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_78795881_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ES_00011859	chr12	+	433	5	FSM	ENSMUSG00000021116.11	ENSMUST00000220382.2	433	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1948.08110714108	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCCCTGAGGGCAG	NA	False	NA	NA	False	NA	NA	NA	78908903	78927948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_78908955_78921337_78921418_78923865_78924018_78926724_78926832_78927905
ES_00011861	chr12	+	381	4	FSM	ENSMUSG00000060716.8	ENSMUST00000217954.2	430	4	49	0	49	0	multi-exon	FALSE	canonical	1	5	junction_1	64.6288549247849	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGTGGACTCCACAGGTA	6705	False	NA	NA	False	GATAAA	-16	NA	79076516	79097080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_79076623_79087265_79087437_79095965_79096029_79097039
ES_00011870	chr12	+	3182	9	NNC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	67.9167689160785	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2717	False	NA	22	True	AATAAA	-19	NA	80509922	80544896	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536249_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
ES_00011872	chr12	+	3916	15	FSM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	0	6	0	0	multi-exon	FALSE	canonical	2	15	junction_3	4.40141442942968	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATAGGCTGATGCCTTTA	NA	False	NA	3	True	AATAAA	-18	NA	80565763	80650666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
ES_00011874	chr12	+	5214	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	-13	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	10.9455724179028	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTGAGTGGCTCTTT	NA	False	NA	12	True	ATTAAA	-17	NA	80690999	80730111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
ES_00011880	chr12	+	1526	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	-41	6	-13	0	multi-exon	FALSE	canonical	3	307	junction_1	564.545762863691	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	80992264	80997271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ES_00011881	chr12	+	1533	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	-41	6	-13	0	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	80992264	80997271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ES_00011882	chr12	+	1583	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	-15	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992343	80997277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ES_00011883	chr12	+	3482	4	FSM	ENSMUSG00000021134.18	ENSMUST00000151036.2	3482	4	0	0	0	0	multi-exon	FALSE	canonical	3	1874	junction_1	63.6867333123626	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	80993149	80997271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80994156_80994269_80994369_80994569_80995943_80996267
ES_00011886	chr12	+	3459	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	-20	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81073581	81233184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ES_00011887	chr12	+	3496	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81073581	81233188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ES_00011893	chr12	+	6223	24	NIC	ENSMUSG00000042700.17	novel	6179	24	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_3	21.8092781282731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATGTCTTTATTTTTT	NA	False	NA	21	True	NA	NA	NA	82216161	82497048	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ES_00011894	chr12	+	8078	23	FSM	ENSMUSG00000042700.17	ENSMUST00000166429.9	8215	23	126	11	70	-7	multi-exon	FALSE	canonical	3	101	junction_2	20.7113176231246	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTTAAAATGGATTGGT	NA	False	NA	6	True	AATAAA	-15	NA	82216319	82498549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ES_00011899	chr12	+	2121	14	NNC	ENSMUSG00000021222.10	novel	2008	14	NA	NA	-37	74	at_least_one_novel_splicesite	TRUE	canonical	3	38	junction_9	62.8602281575852	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGTACTTCTTTGCCTA	NA	False	NA	19	True	AATAAA	-32	NA	83567202	83588768	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584489_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ES_00011900	chr12	+	1892	13	FSM	ENSMUSG00000021222.10	ENSMUST00000223291.2	2005	13	113	0	39	0	multi-exon	FALSE	canonical	3	216	junction_8	22.5331545850898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATTTTGCCAAAGTATA	NA	False	NA	15	True	NA	NA	NA	83572886	83588694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ES_00011902	chr12	+	630	6	FSM	ENSMUSG00000010608.16	ENSMUST00000183154.8	608	6	-22	0	-17	0	multi-exon	FALSE	canonical	3	38	junction_2	173.243643462033	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACTACTACAGTTTTT	3964	False	NA	NA	False	ATTAAA	-21	NA	83679008	83693004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910
ES_00011907	chr12	+	4313	21	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_2	165.091270211359	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGTAGTGCATATA	4020	False	NA	13	True	AATAAA	-13	NA	83679064	83729897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ES_00011921	chr12	+	2389	3	FSM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	-193	0	-193	0	multi-exon	FALSE	canonical	3	74	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTATGTTGTCCTTCCT	NA	False	NA	NA	False	AATAAA	-19	NA	84034441	84040647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84035256_84037267_84037471_84039275
ES_00011923	chr12	+	2460	2	FSM	ENSMUSG00000072949.7	ENSMUST00000222591.2	2613	2	153	0	153	0	multi-exon	FALSE	canonical	3	134	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTGTAACCGAAAATTGT	6346	False	NA	11	True	AATAAA	-22	NA	84059790	84064448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84061356_84063553
ES_00011931	chr12	+	2296	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	-12	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	1849	False	NA	8	True	AATAAA	-13	NA	84363891	84390494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ES_00011934	chr12	+	2069	11	FSM	ENSMUSG00000021235.14	ENSMUST00000150391.8	2056	11	-13	0	0	0	multi-exon	FALSE	canonical	3	205	junction_5	17.0188131196038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408803	84420562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ES_00011935	chr12	+	1583	12	FSM	ENSMUSG00000021235.14	ENSMUST00000152913.8	1583	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	67.4165538687435	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408803	84420566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ES_00011938	chr12	+	2270	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCCAGGTTTTCCTTG	NA	False	NA	5	True	AATAAA	-16	NA	84498195	84578347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
ES_00011942	chr12	+	741	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222449.2	374	3	-22	-345	5	0	multi-exon	FALSE	canonical	3	86	junction_1	24	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	False	NA	12	True	TATAAA	-15	NA	84820029	84821859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84820146_84820369_84820452_84821316
ES_00011945	chr12	+	741	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	-14	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTTGGAGTTAACCTC	NA	False	NA	-69	True	NA	NA	NA	84820064	84821778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
ES_00011948	chr12	+	933	8	FSM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	-71	-131	13	119	multi-exon	FALSE	canonical	3	15	junction_1	770.463443887734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCTGAATGTCATAGAAC	4642	False	NA	NA	False	NA	NA	NA	85017683	85030196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85017818_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ES_00011949	chr12	+	617	3	FSM	ENSMUSG00000021243.15	ENSMUST00000172241.2	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	1987	junction_2	95	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTATGTTGTCTCAA	NA	False	NA	17	True	ATTAAA	-19	NA	85026983	85030071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85027377_85029009_85029105_85029942
ES_00011952	chr12	+	7003	21	FSM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	25.0129466476863	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCCTTTTCTCTTATTT	NA	False	NA	32	True	AATAAA	-42	NA	85043125	85117289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
ES_00011953	chr12	+	7154	17	ISM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	29	12258	29	-1079	5prime_fragment	FALSE	canonical	3	62	junction_4	25.712275157014	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATTGAGTCTCAGTAT	NA	False	NA	NA	False	ATTAAA	-20	NA	85043154	85105031	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995
ES_00011957	chr12	+	1602	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	3	0	3	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	85266257	85273402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ES_00011958	chr12	+	793	4	FSM	ENSMUSG00000004788.12	ENSMUST00000151925.8	793	4	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	2.49443825784929	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGTCAACAAGGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	85266319	85269600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85266717_85266870_85267020_85268250_85268415_85269517
ES_00011959	chr12	+	935	5	FSM	ENSMUSG00000004788.12	ENSMUST00000128709.2	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	11.3468057179102	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCCCCCATGTTTAAGCT	NA	False	NA	NA	False	NA	NA	NA	85266355	85270262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85266499_85266595_85267020_85268250_85268415_85269517_85269614_85270154
ES_00011963	chr12	+	1643	4	FSM	ENSMUSG00000034271.17	ENSMUST00000050687.14	1643	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	28.5228952870419	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCGAGTGGTGTCTG	6639	False	NA	34	True	AGTAAA	-20	NA	85646189	85686652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85646389_85654906_85655140_85678418_85678524_85685546
ES_00011966	chr12	+	666	4	FSM	ENSMUSG00000012609.20	ENSMUST00000142411.9	650	4	-16	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	22.3755819291179	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTCTTATAAGATTGTGA	NA	False	NA	NA	False	ACTAAA	-34	NA	85871742	85890561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85872120_85873226_85873399_85878668_85878776_85890551
ES_00011971	chr12	+	4534	33	FSM	ENSMUSG00000012609.20	ENSMUST00000155448.9	4534	33	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_20	11.0847234403931	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGTTTTTTTTCTAT	NA	False	NA	5	True	AATAAA	-15	NA	85871848	86100533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964549_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86099916
ES_00011976	chr12	+	4355	10	FSM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	9.46077020329245	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTTATGATTGAGGTC	NA	False	NA	3	True	AATAAA	-14	NA	86288631	86338558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
ES_00011978	chr12	+	3949	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	-34	-2571	-34	8	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTTGTCTGTTGGAGTAC	NA	False	NA	27	True	AATAAA	-27	NA	86516856	86568410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ES_00011979	chr12	+	3930	7	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	0	7244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATGCAACTTGAAGCTAT	NA	False	NA	NA	False	NA	NA	NA	86516890	86575646	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86568394_86575614
ES_00011982	chr12	+	4140	4	FSM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	-42	0	-42	0	multi-exon	FALSE	canonical	3	99	junction_3	3.2659863237109	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGTCTATTTGCTTTG	NA	False	NA	7	True	AATAAA	-19	NA	86994074	87012136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553
ES_00011985	chr12	+	1721	9	FSM	ENSMUSG00000021033.12	ENSMUST00000222222.2	724	9	-139	-858	-139	0	multi-exon	FALSE	canonical	3	69	junction_1	142.509429512576	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	3708	False	NA	13	True	NA	NA	NA	87204242	87211497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87204435_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ES_00011986	chr12	+	739	6	FSM	ENSMUSG00000021037.8	ENSMUST00000223352.2	739	6	0	0	0	0	multi-exon	TRUE	canonical	3	287	junction_1	1102.86361804169	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTGACCTCCCCAGA	NA	False	NA	NA	False	NA	NA	NA	87313252	87319423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87313433_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345
ES_00011987	chr12	+	1397	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	-20	0	-20	0	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313451	87320753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ES_00011989	chr12	+	1933	6	FSM	ENSMUSG00000021037.8	ENSMUST00000223239.2	1933	6	0	0	0	0	multi-exon	FALSE	canonical	3	2699	junction_4	132.214068842919	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGACTGACAGCCTTGTG	NA	False	NA	17	True	AGTAAA	-35	NA	87316075	87320772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ES_00012000	chr12	+	489	1	FSM	ENSMUSG00000114075.2	ENSMUST00000222340.2	435	1	41	-95	41	95	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTGGCTTGTTAATGC	NA	False	NA	NA	False	AGTAAA	-14	NA	88050507	88050996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_88050500_88051000
ES_00012003	chr12	+	2253	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_1	17.7822945651004	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	False	NA	11	True	AATAAA	-24	NA	88327417	88428490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ES_00012005	chr12	+	2206	1	FSM	ENSMUSG00000021007.15	ENSMUST00000222195.2	2193	1	-13	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	98594412	98596618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_98594400_98596600
ES_00012006	chr12	+	2057	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	-5	0	-5	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594410	98636074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ES_00012007	chr12	+	1920	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	-7	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594448	98636071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ES_00012010	chr12	+	3061	14	FSM	ENSMUSG00000021012.17	ENSMUST00000057000.17	3046	14	-15	0	0	0	multi-exon	FALSE	canonical	3	91	junction_9	361.05984686441	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGTCTGTGTTTAATA	NA	False	NA	NA	False	AATAAA	-10	NA	98713226	98754006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ES_00012011	chr12	+	3535	17	FSM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	-21	0	0	0	multi-exon	FALSE	canonical	3	883	junction_12	209.53098667023	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713226	98754012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ES_00012016	chr12	+	2963	14	FSM	ENSMUSG00000021177.17	ENSMUST00000151019.8	3945	14	0	982	0	-982	multi-exon	FALSE	canonical	3	362	junction_1	46.3484359476444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAACTGTCCGACTCA	NA	False	NA	NA	False	NA	NA	NA	99850775	99902639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263
ES_00012018	chr12	+	2265	16	NIC	ENSMUSG00000021177.17	novel	2019	15	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_1	106.266875783985	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99852734	99921478	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_99852980_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ES_00012019	chr12	+	689	5	FSM	ENSMUSG00000021177.17	ENSMUST00000128739.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_4	38.0616276583122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99880264	99921478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ES_00012028	chr12	+	214	1	Intergenic	novelGene_973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTAGTTTCATAAAACTA	NA	False	NA	NA	False	NA	NA	NA	101003311	101003525	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_101003300_101003500
ES_00012033	chr12	+	3390	13	FSM	ENSMUSG00000021192.17	ENSMUST00000021609.10	3390	13	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	41.9333962638637	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAGTGCTTTATATTTT	NA	False	NA	NA	False	AATAAA	-20	NA	102435450	102464166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_102436241_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
ES_00012035	chr12	+	857	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	-45	-2159	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTTGCTTGCTTTAAA	NA	False	NA	2	True	CATAAA	-17	NA	102709975	102711661	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_102710030_102710858
ES_00012037	chr12	+	3261	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
ES_00012041	chr12	+	3055	5	FSM	ENSMUSG00000021203.16	ENSMUST00000141055.2	3055	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.35414346693485	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8244	False	NA	NA	False	ATTAAA	-16	NA	103355024	103372604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369688_103370484
ES_00012044	chr12	+	991	7	FSM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	-14	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	6.23832242407097	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6620	False	NA	5	True	AATAAA	-19	NA	103400503	103406498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659_103405822_103406212
ES_00012049	chr12	+	2156	6	FSM	ENSMUSG00000079014.5	ENSMUST00000109958.3	2200	6	44	0	9	0	multi-exon	FALSE	canonical	0	0	junction_3	10.7256701422335	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTTCACAGAACTTCCA	NA	False	NA	NA	False	GATAAA	-23	NA	104229424	104235631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_104229474_104230560_104230695_104231352_104231972_104232703_104232978_104233914_104234066_104234702
ES_00012052	chr12	+	393	2	Intergenic	novelGene_978	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGGCTCCATTTTT	668	False	NA	12	True	NA	NA	NA	104343736	104349132	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_104343932_104348934
ES_00012053	chr12	+	1799	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9689	2	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCTCAGCTTGCAGTC	665	False	NA	20	True	AATACA	-29	NA	104343733	104360518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
ES_00012054	chr12	+	4437	1	FSM	ENSMUSG00000114826.3	ENSMUST00000232932.2	4429	1	-9	1	-9	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCATGTGTAATTTTGAC	NA	False	NA	NA	False	AATAAA	-17	NA	104439580	104444017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_104439600_104444000
ES_00012063	chr12	+	4398	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	-18	0	-18	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAAGTAGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	105750934	105805066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ES_00012064	chr12	+	1057	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	-24	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105750991	105775968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ES_00012065	chr12	+	816	7	FSM	ENSMUSG00000021111.16	ENSMUST00000165584.8	809	7	-7	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	661.770709704065	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105750991	105775968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105751174_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ES_00012066	chr12	+	2076	12	FSM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	335.398664968735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTGTCTCTGTGTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	105750991	105780328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456
ES_00012070	chr12	+	1523	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	-14	0	-14	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATCTTTAGTCGTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	105976472	106041479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ES_00012071	chr12	+	2520	14	FSM	ENSMUSG00000021115.16	ENSMUST00000221312.2	2520	14	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_12	248.778292970376	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976541	106041459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
ES_00012072	chr12	+	1766	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	-24	0	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976550	106041668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ES_00012073	chr12	+	3720	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	-9	0	0	0	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTATTTGTTTG	NA	False	NA	17	True	NA	NA	NA	105976541	106043685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ES_00012074	chr12	+	2804	12	FSM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	-15	0	-15	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5217166726353	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTATGTGTGAGTACAG	NA	False	NA	24	True	AATAAA	-17	NA	108145822	108169616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
ES_00012080	chr12	+	3614	6	FSM	ENSMUSG00000040856.18	ENSMUST00000056110.15	4653	6	406	633	-200	-633	multi-exon	FALSE	canonical	2	2	junction_1	11.0995495404093	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACCTGCAGAGTGTAAGG	NA	False	NA	NA	False	NA	NA	NA	109419180	109428629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109419221_109419512_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
ES_00012085	chr12	+	1793	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTAAAGCAGTGATGGG	NA	False	NA	NA	False	NA	NA	NA	109506892	109538151	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00012086	chr12	+	1756	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	8	3	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109506897	109538163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00012087	chr12	+	1719	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	8	3	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109506897	109538163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00012088	chr12	+	1640	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	11	3	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	144.53415668616	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGGGTGTGCTACTAAT	NA	False	NA	NA	False	ACTAAA	-4	NA	109506900	109538163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00012090	chr12	+	2647	5	FSM	ENSMUSG00000021268.18_ENSMUSG00000084535.3	ENSMUST00000166636.9	797	5	-1850	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	135.706484738203	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAAGCAGTGATGGGTG	NA	False	NA	NA	False	NA	NA	NA	109510423	109538153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00012097	chr12	+	3191	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	549	junction_7	35.1002092779804	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	2897	False	NA	NA	False	NA	NA	NA	109612595	109628143	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ES_00012098	chr12	+	2352	8	FSM	ENSMUSG00000097451.12	ENSMUST00000238384.2	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_5	36.3862499259469	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	901	False	NA	NA	False	ACTAAA	-5	NA	109616672	109628150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ES_00012099	chr12	+	1656	8	FSM	ENSMUSG00000097451.12	ENSMUST00000238357.2	1651	8	-5	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	215.030040616066	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCATTTGTCAGGCTCCG	1325	False	NA	NA	False	NA	NA	NA	109617096	109627883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624491_109624556_109626156_109626242_109627179
ES_00012101	chr12	+	1934	9	FSM	ENSMUSG00000097451.12	ENSMUST00000238513.2	1929	9	-5	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	300.646153101948	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	1325	False	NA	NA	False	ACTAAA	-5	NA	109617096	109628150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109617534_109618292_109618373_109619134_109619150_109620719_109620867_109622282_109622369_109623221_109623266_109624486_109624556_109626156_109626242_109627179
ES_00012104	chr12	+	694	2	FSM	ENSMUSG00000097391.9	ENSMUST00000182300.2	694	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTGCGTGTCTGTATT	4789	False	NA	21	True	AATAAA	-21	NA	109714397	109715892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109714728_109715528
ES_00012107	chr12	+	375	1	FSM	ENSMUSG00000113198.2	ENSMUST00000222676.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGGTTCAATCAGCTG	3194	False	NA	-36	True	NA	NA	NA	110282423	110282798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110282400_110282800
ES_00012109	chr12	+	1889	14	NIC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	-10	0	combination_of_known_junctions	TRUE	canonical	3	197	junction_1	321.388242421629	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCTCTTGTATAAGTA	NA	False	NA	13	True	AATAAA	-18	NA	110413543	110537345	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_110413820_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ES_00012111	chr12	+	2452	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	-86	1	-86	-1	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGTGTGTATTTTCCT	4834	False	NA	13	True	AATAAA	-15	NA	110452085	110538121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ES_00012112	chr12	+	4414	13	FSM	ENSMUSG00000017843.15	ENSMUST00000109832.3	4108	13	-306	0	-305	0	multi-exon	FALSE	canonical	3	190	junction_12	229.453638502906	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGCTCTATGAAACTAAATT	4615	False	NA	3	True	AATAAA	-17	NA	110451866	110549496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110546834
ES_00012114	chr12	+	4599	15	FSM	ENSMUSG00000017843.15	ENSMUST00000221074.2	1971	15	-426	-2202	-305	0	multi-exon	FALSE	canonical	3	61	junction_14	373.202494687289	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGCTCTATGAAACTAAATT	4615	False	NA	3	True	AATAAA	-17	NA	110451866	110549496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110544534_110544603_110546834
ES_00012117	chr12	+	2492	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	-108	0	-60	0	multi-exon	FALSE	canonical	3	142	junction_2	4	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5238	False	NA	19	True	AATAAA	-18	NA	110704317	110761462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110704712_110745729_110745913_110759547
ES_00012118	chr12	+	1363	3	FSM	ENSMUSG00000037957.15	ENSMUST00000193053.6	1351	3	-12	0	-12	0	multi-exon	FALSE	canonical	3	22	junction_2	64	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTGTTTATCCTTTTT	5286	False	NA	NA	False	ATTAAA	-15	NA	110704365	110770672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110704712_110745729_110745913_110769838
ES_00012119	chr12	+	2755	5	NIC	ENSMUSG00000037957.15	novel	960	3	NA	NA	-12	67	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	61.3977809045246	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATTGAAGTACTTCATT	5286	False	NA	NA	False	TTTAAA	-44	NA	110704365	110770739	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_110704712_110745729_110745913_110759547_110760808_110763376_110763442_110769838
ES_00012120	chr12	+	2170	3	NNC	ENSMUSG00000037957.15	novel	960	3	NA	NA	4033	-10	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	67	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAAGAAGCAGTTTGTA	9596	False	NA	9	True	AATAAA	-8	NA	110708675	110761452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_110708758_110745729_110745913_110759547
ES_00012122	chr12	+	3468	7	FSM	ENSMUSG00000021271.6	ENSMUST00000222460.2	2385	7	0	-1083	0	0	multi-exon	FALSE	canonical	3	41	junction_4	9.97914491994847	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGCTTTCTTGATGTGT	NA	False	NA	13	True	AGTAAA	-16	NA	110816739	110836430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
ES_00012124	chr12	+	7778	20	FSM	ENSMUSG00000021275.17	ENSMUST00000165978.3	7778	20	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.72278616298412	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTAATTTTGCAGTAT	5383	False	NA	15	True	NA	NA	NA	110855697	110938828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110855761_110862520_110862809_110881083_110881213_110881780_110881913_110885302_110885461_110892597_110892911_110895465_110895599_110897833_110898167_110899050_110900067_110902709_110902894_110904624_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ES_00012126	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	110864547	110864985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_110864500_110865000
ES_00012129	chr12	+	7209	12	FSM	ENSMUSG00000021277.17	ENSMUST00000021706.11	7060	12	-153	4	-60	0	multi-exon	FALSE	canonical	3	25	junction_1	10.269911118416	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTCCGGCTCTCTGGCT	NA	False	NA	5	True	AATAAA	-9	NA	111132743	111233578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111133037_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
ES_00012136	chr12	+	4073	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	-23	0	-23	0	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCACTTGGGGTTTTTTTT	NA	False	NA	12	True	AAAACA	-18	NA	111504426	111513186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ES_00012137	chr12	+	3566	12	FSM	ENSMUSG00000021282.18	ENSMUST00000222375.2	3547	12	-19	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	667.668312267859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCTGTCTGCTTTAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	111504630	111513022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111504674_111504788_111504983_111505980_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ES_00012139	chr12	+	1969	11	FSM	ENSMUSG00000021282.18	ENSMUST00000050993.11	1969	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	700.620753332357	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTGGGCTATGA	NA	False	NA	18	True	AATAAA	-19	NA	111505215	111511357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111505382_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ES_00012143	chr12	+	3368	16	FSM	ENSMUSG00000007411.17	ENSMUST00000075281.8	3321	16	-47	0	-47	0	multi-exon	FALSE	canonical	3	91	junction_15	105.235101875119	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCTTGCACTGTCTCC	689	False	NA	NA	False	ATTAAA	-18	NA	111540909	111622652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111621703
ES_00012144	chr12	+	3369	17	FSM	ENSMUSG00000007411.17	ENSMUST00000084953.13	3365	17	-4	0	0	0	multi-exon	FALSE	canonical	3	31	junction_15	118.351634441608	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGCACTGTCTCCTAC	736	False	NA	NA	False	ATTAAA	-21	NA	111540956	111622655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111619823_111619869_111621703
ES_00012145	chr12	+	2807	18	FSM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_16	68.4977205187368	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGTGTTTTTCTAAG	1264	False	NA	89	True	TTTAAA	-20	NA	111541484	111622594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ES_00012147	chr12	+	1989	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644541	111650336	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
ES_00012151	chr12	+	2411	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	41.916157811926	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGTGTCTTGTGTCTGT	NA	False	NA	9	True	AATAAA	-13	NA	111725299	111761329	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111760082_111760134_111760770
ES_00012152	chr12	+	2214	15	NIC	ENSMUSG00000021288.20	novel	2268	16	NA	NA	41	-3	combination_of_known_junctions	FALSE	canonical	2	27	junction_13	41.0915478672007	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATCTACCAGAATGAAAG	NA	False	NA	NA	False	ATTAAA	-15	NA	111725323	111773142	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111772441_111772509_111772748
ES_00012153	chr12	+	2349	16	NIC	ENSMUSG00000021288.20	novel	2268	16	NA	NA	39	-1	combination_of_known_splicesites	FALSE	canonical	2	51	junction_12	36.3315595897317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTACCAGAATGAAAGCC	NA	False	NA	NA	False	ATTAAA	-17	NA	111725321	111773144	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111761981_111762113_111772441_111772509_111772748
ES_00012154	chr12	+	2241	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_13	36.2404808050278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725323	111773145	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111772441_111772509_111772748
ES_00012155	chr12	+	2268	16	FSM	ENSMUSG00000021288.20	ENSMUST00000122300.8	2268	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	39.7419453754119	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTTCATAACTATTTTT	NA	False	NA	NA	False	ATTAAA	-34	NA	111725446	111773161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755921_111761981_111762113_111772441_111772509_111772748
ES_00012157	chr12	+	956	3	FSM	ENSMUSG00000021288.20	ENSMUST00000141435.2	806	3	-158	8	14	7	multi-exon	FALSE	canonical	3	104	junction_1	18.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGAAAGCCTGTTCATA	2696	False	NA	NA	False	ATTAAA	-25	NA	111761627	111773152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111762113_111772441_111772509_111772748
ES_00012159	chr12	+	1327	8	FSM	ENSMUSG00000021286.9	ENSMUST00000223211.2	794	8	-38	-495	0	0	multi-exon	FALSE	canonical	3	188	junction_5	258.732309855699	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780603	111794785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792012_111792067_111793976_111794120_111794251
ES_00012161	chr12	+	1265	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780668	111794785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
ES_00012165	chr12	+	1789	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	-12	0	-12	0	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCGAGAGGTCATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	112586466	112607773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ES_00012177	chr12	+	2825	19	NIC	ENSMUSG00000021144.15	novel	2789	20	NA	NA	-89	-2	combination_of_known_junctions	FALSE	canonical	3	225	junction_3	92.1761598486531	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCAAGCCCTTCTGCGTC	9234	False	NA	21	True	ATTAAA	-38	NA	113061808	113100823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
ES_00012178	chr12	+	2861	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109726.8	2775	20	-89	3	-89	-2	multi-exon	FALSE	canonical	3	59	junction_16	163.105730200924	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCAAGCCCTTCTGCGTC	9234	False	NA	21	True	ATTAAA	-38	NA	113061808	113100823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
ES_00012179	chr12	+	2789	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109727.9	2789	20	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	117.588629860953	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAAGCCCTTCTGCGTCTT	9323	False	NA	23	True	ATTAAA	-40	NA	113061897	113100825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
ES_00012181	chr12	+	448	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	-3	0	-3	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115628	113117497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ES_00012182	chr12	+	1827	1	FSM	ENSMUSG00000006360.12	ENSMUST00000196932.2	1809	1	-18	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115672	113117499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113115700_113117500
ES_00012183	chr12	+	723	5	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	0	1209	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	98.7572782127981	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113120040	113122418	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_113120192_113120294_113120374_113121197_113121348_113121688_113121788_113122174
ES_00012185	chr12	+	926	6	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	0	1209	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_5	67.517108942845	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113120040	113122418	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113122174
ES_00012186	chr12	+	1403	5	ISM	ENSMUSG00000037466.14	ENSMUST00000196755.5	4000	9	-1	7249	-1	1210	5prime_fragment	FALSE	canonical	3	15	junction_3	93.8469498705206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGCGCATGCCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	113120058	113122419	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688
ES_00012188	chr12	+	3290	9	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	0	-600	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	73.2154355310409	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120075	113129068	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672_113128352_113128371
ES_00012189	chr12	+	998	6	NNC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	1	1210	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	95.4303934813223	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGCGCATGCCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	113120076	113122419	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113122174
ES_00012194	chr12	+	384	2	Antisense	novelGene_ENSMUSG00000106239.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	457	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTTTTTTTGACAATGATG	NA	False	NA	NA	False	NA	NA	NA	115945977	115956103	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_115946072_115955813
ES_00012198	chr12	+	6508	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-52	-172	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGGTTGATGAATGCA	NA	False	NA	43	True	TTTAAA	-3	NA	116368969	116427179	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ES_00012200	chr12	+	6815	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	0	-197	intron_retention	FALSE	canonical	3	183	junction_1	32.2243081487453	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGCCAAGAATAATATTT	NA	False	NA	18	True	AATAAA	-23	NA	116369053	116427154	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ES_00012206	chr12	+	3168	11	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	75.8209074068624	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807199	117842441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_117807693_117812532_117812694_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
ES_00012207	chr12	+	3893	10	FSM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	0	-936	0	936	multi-exon	FALSE	canonical	3	107	junction_2	34.4673758792282	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATACTGTGGATTACATG	NA	False	NA	NA	False	NA	NA	NA	117807249	117843377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
ES_00012208	chr12	+	1878	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACAGACTACCAGAATC	NA	False	NA	NA	False	GATAAA	-37	NA	119224712	119226590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_119224700_119226600
ES_00012210	chr12	-	3513	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	0	0	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3359969	3297427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ES_00012211	chr12	-	413	2	FSM	ENSMUSG00000097429.2	ENSMUST00000180719.2	1423	2	0	1010	0	-1010	multi-exon	FALSE	canonical	3	6	junction_1	0	3732	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGAAGAGTCCGGGCAGT	NA	False	NA	NA	False	NA	NA	NA	3407153	3394825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_3394948_3406862
ES_00012212	chr12	-	1923	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	5.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAATTGTTAAGTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	3476740	3455309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_3456712_3457643_3457925_3476500
ES_00012214	chr12	-	252	1	FSM	ENSMUSG00000112105.2	ENSMUST00000219719.2	1347	1	1139	-44	1139	44	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCATTTGGGGCGGGGA	NA	False	NA	NA	False	NA	NA	NA	3572129	3571877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_3571900_3572100
ES_00012215	chr12	-	239	1	Intergenic	novelGene_812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	321	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGCAGCTTTTCAAAAG	NA	False	NA	NA	False	NA	NA	NA	3604284	3604045	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_3604000_3604300
ES_00012216	chr12	-	4348	7	FSM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	17.0953209972788	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGCTTTTTAAGC	NA	False	NA	NA	False	ACTAAA	-23	NA	4284294	4261666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
ES_00012217	chr12	-	1769	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	0	-378	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACCTTTTCTCTTTCACC	NA	False	NA	NA	False	NA	NA	NA	4283938	4263859	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
ES_00012218	chr12	-	1683	5	FSM	ENSMUSG00000020652.18	ENSMUST00000126017.2	1683	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	19.0328663106743	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGAGCAGTTCCACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	4283938	4265691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
ES_00012219	chr12	-	7329	23	FSM	ENSMUSG00000020647.11	ENSMUST00000085814.5	7329	23	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_22	13.9950552070342	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGCCTCTTCATTTAT	NA	False	NA	0	True	AATAGA	-19	NA	4527182	4297361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4299751_4299835_4299891_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693_4325009_4325172_4325342_4328101_4328220_4340813_4340995_4344909_4346249_4347475_4347624_4356423_4356565_4363025_4363122_4365685_4365866_4372867_4373046_4385780_4385879_4389017_4389185_4394396_4394503_4404360_4404510_4466670_4466806_4526771
ES_00012224	chr12	-	297	2	NIC	ENSMUSG00000112819.2	novel	457	3	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	47	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	4603785	4602543	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_4602746_4603690
ES_00012225	chr12	-	502	3	FSM	ENSMUSG00000112819.2	ENSMUST00000217932.2	457	3	-38	-7	-38	7	multi-exon	FALSE	canonical	3	11	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGCTACATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	4603823	4602538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4602746_4603013_4603176_4603690
ES_00012226	chr12	-	604	2	Intergenic	novelGene_821	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	258	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGCTGCTTGGAAGTC	NA	False	NA	NA	False	NA	NA	NA	4637453	4619088	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_4619125_4636885
ES_00012228	chr12	-	571	1	FSM	ENSMUSG00000091732.2	ENSMUST00000080062.7	525	1	6	-52	6	52	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCTGAAAATAAATATGC	NA	False	NA	NA	False	AATAAA	-31	NA	4739920	4739349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4739300_4739900
ES_00012230	chr12	-	1236	11	NNC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	8.77724330299668	689	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGTGTCTGTGATGATT	NA	False	NA	0	True	AATAAA	-14	NA	4818946	4789887	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_4790044_4791061_4791208_4795651_4795757_4797154_4797224_4798020_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
ES_00012231	chr12	-	978	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	0	-2	0	2	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTGGGAGGTTCTTTA	NA	False	NA	2	True	AATAAA	-31	NA	4891591	4883171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
ES_00012232	chr12	-	1026	4	FSM	ENSMUSG00000020635.9	ENSMUST00000219880.2	246	4	-159	-621	-3	2	multi-exon	FALSE	canonical	1	5	junction_1	23.2999761564017	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTGGGAGGTTCTTTA	NA	False	NA	2	True	AATAAA	-31	NA	4891594	4883171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4883841_4884738_4884852_4888168_4888217_4891398
ES_00012233	chr12	-	423	4	FSM	ENSMUSG00000037336.15	ENSMUST00000153676.2	576	4	51	102	51	-102	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGCCGGCCAAGTGACC	NA	False	NA	NA	False	NA	NA	NA	4919210	4917337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4917460_4917611_4917703_4918912_4919044_4919131
ES_00012234	chr12	-	2696	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGTGGTTGTACATG	NA	False	NA	-6	True	GATAAA	-13	NA	4957705	4929031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ES_00012235	chr12	-	2146	7	FSM	ENSMUSG00000020634.13	ENSMUST00000142867.8	2146	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	462.20356866741	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAGCAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	4957264	4929348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957140
ES_00012236	chr12	-	349	1	FSM	ENSMUSG00000111967.2	ENSMUST00000218888.2	492	1	8	135	8	-135	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAAAAAGGACTCTGTGT	NA	False	NA	NA	False	AAGAAA	-40	NA	6548607	6548258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_6548300_6548600
ES_00012237	chr12	-	2354	1	FSM	ENSMUSG00000054364.6	ENSMUST00000067384.6	2349	1	0	-5	0	5	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTTAATAGTGTCAGA	NA	False	NA	92	True	ATTAAA	-33	NA	8550009	8547655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_8547700_8550000
ES_00012239	chr12	-	920	1	FSM	ENSMUSG00000112515.2	ENSMUST00000219622.2	850	1	24	-94	24	94	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCTGACCTAGGCTGAC	NA	False	NA	NA	False	NA	NA	NA	10774482	10773562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_10773600_10774500
ES_00012241	chr12	-	2398	3	FSM	ENSMUSG00000043673.12	ENSMUST00000055673.2	2933	3	0	535	0	0	multi-exon	FALSE	canonical	3	56	junction_1	7	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGTTTCTATGTTCT	4007	False	NA	1	True	AATAAA	-21	NA	11200374	11140737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_11142757_11169759_11169950_11200185
ES_00012242	chr12	-	476	1	FSM	ENSMUSG00000047002.3	ENSMUST00000049877.3	613	1	421	-284	421	284	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTTTTGATAATGTTAA	7240	False	NA	NA	False	TTTAAA	-35	NA	11258552	11258076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_11258100_11258600
ES_00012243	chr12	-	5283	14	FSM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	0	-15	0	15	multi-exon	FALSE	canonical	3	36	junction_2	6.04323672043149	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATACTTCTCTTTTCTT	NA	False	NA	19	True	NA	NA	NA	11315767	11288905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ES_00012244	chr12	-	5153	14	NIC	ENSMUSG00000051235.11	novel	5268	14	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	12.9111666727709	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATTTTAATCCTTACC	NA	False	NA	1	True	NA	NA	NA	11315789	11288923	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315721
ES_00012249	chr12	-	425	1	FSM	ENSMUSG00000112413.2	ENSMUST00000219165.2	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGGCCAATAAAGACTGGT	NA	False	NA	-36	True	NA	NA	NA	11810872	11810447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_11810400_11810900
ES_00012251	chr12	-	2679	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	0	-5	0	5	multi-exon	FALSE	canonical	3	794	junction_2	66.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCCTTCCTAGCTTGG	NA	False	NA	-13	True	AATAAA	-25	NA	12991915	12986088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_12987612_12989610_12990488_12991636
ES_00012252	chr12	-	5618	2	FSM	ENSMUSG00000037169.16	ENSMUST00000151534.2	681	2	-89	-4848	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCGATGTTTTCCTTCC	NA	False	NA	-21	True	AATAAA	-17	NA	12991915	12986096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_12991436_12991636
ES_00012253	chr12	-	4838	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	0	4	0	-4	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCTTGCTGTGTGTTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	13299214	13266977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
ES_00012254	chr12	-	323	1	FSM	ENSMUSG00000113188.2	ENSMUST00000220724.2	652	1	96	233	96	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGATCGTGTCGTTCTG	NA	False	NA	NA	False	NA	NA	NA	13487003	13486680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_13486700_13487000
ES_00012255	chr12	-	1367	1	FSM	ENSMUSG00000071414.6	ENSMUST00000166583.4	948	1	-38	-381	-38	381	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGTTTTAAAACAAAATT	NA	False	NA	NA	False	AATAAA	-31	NA	13506009	13504642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_13504600_13506000
ES_00012257	chr12	-	555	1	FSM	ENSMUSG00000113222.2	ENSMUST00000221004.2	554	1	3	-4	3	4	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATAAAATAAATCCTGAT	NA	False	NA	NA	False	AATAAA	-4	NA	15915695	15915140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_15915100_15915700
ES_00012258	chr12	-	5456	22	NIC	ENSMUSG00000020593.17	novel	5581	21	NA	NA	15	35	combination_of_known_junctions	FALSE	canonical	3	30	junction_21	35.2563659197666	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAGGTGCTCTTATTTTT	7261	False	NA	13	True	TTTAAA	-16	NA	16639752	16585919	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
ES_00012259	chr12	-	5599	21	FSM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	0	-18	0	18	multi-exon	FALSE	canonical	3	67	junction_16	22.2780160696593	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCAGTGTGAGACCCT	7242	False	NA	NA	False	NA	NA	NA	16639771	16585651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ES_00012260	chr12	-	4114	20	FSM	ENSMUSG00000020593.17	ENSMUST00000221230.2	4114	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_15	24.5031514734934	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAAAAAAGCAGT	7239	False	NA	NA	False	NA	NA	NA	16639774	16587040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ES_00012261	chr12	-	4115	21	FSM	ENSMUSG00000020593.17	ENSMUST00000222989.2	4103	21	-12	0	-5	0	multi-exon	FALSE	canonical	3	30	junction_20	37.3187620373452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGCTTTACTTTG	7234	False	NA	-25	True	AATGAA	-13	NA	16639779	16587188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
ES_00012263	chr12	-	1928	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050119	17038648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
ES_00012265	chr12	-	4873	1	FSM	ENSMUSG00000051726.7	ENSMUST00000170580.3	4789	1	-82	-2	-82	2	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTGTGTATTTTGA	NA	False	NA	NA	False	NA	NA	NA	17226971	17222098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_17222100_17227000
ES_00012266	chr12	-	1425	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTTCTTGTGTTCT	NA	False	NA	-2	True	AATAAA	-12	NA	17374731	17334725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
ES_00012267	chr12	-	873	3	Intergenic	novelGene_833	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCAAACAAACCATTGCC	NA	False	NA	NA	False	NA	NA	NA	17514635	17508030	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_17508571_17509178_17509309_17514432
ES_00012269	chr12	-	235	1	FSM	ENSMUSG00000113077.2	ENSMUST00000221362.2	167	1	-108	40	-108	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGGTAGCGTAGCCCG	NA	False	NA	NA	False	NA	NA	NA	19932429	19932194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_19932200_19932400
ES_00012270	chr12	-	1012	1	FSM	ENSMUSG00000112956.2	ENSMUST00000221058.2	109	1	-907	4	-907	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAACAGGGTTGTTTAGA	NA	False	NA	NA	False	NA	NA	NA	20019542	20018530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_20018500_20019500
ES_00012271	chr12	-	914	2	Antisense	novelGene_ENSMUSG00000116883.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	88	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTCCAATTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	20686261	20685263	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_20685438_20685521
ES_00012272	chr12	-	4387	2	Genic_Genomic	ENSMUSG00000099759.2	novel	1735	2	NA	NA	18	-6787	multi-exon	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTGTTCGTAAACCAGC	NA	False	NA	NA	False	NA	NA	NA	20865762	20861168	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_20865068_20865274
ES_00012276	chr12	-	952	8	FSM	ENSMUSG00000062352.16	ENSMUST00000232072.2	954	8	0	2	0	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	87.1761060691963	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATATACTTGGAGAAAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	21336220	21317422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_21317590_21320877_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
ES_00012278	chr12	-	1701	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCACTGCATTAAGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	21336098	21320093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
ES_00012284	chr12	-	2216	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	0	-19	0	19	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTTAGTTATGTGAG	NA	False	NA	7	True	AATAAA	-37	NA	21467638	21440052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ES_00012286	chr12	-	1973	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	-3	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	AATAAA	-20	NA	21467589	21440329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ES_00012287	chr12	-	2074	4	Intergenic	novelGene_847	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	5	junction_3	55.5117605157282	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTCTCCATTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	21817704	21807779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_21809538_21810872_21810934_21811135_21811263_21817576
ES_00012288	chr12	-	2359	4	Intergenic	novelGene_848	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_3	39.6063967897443	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTCTCCATTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	21828890	21807779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_21809538_21810872_21810934_21811135_21811263_21828477
ES_00012293	chr12	-	690	4	Intergenic	novelGene_851	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	5.8878405775519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGACAAATTGGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	22080872	22044354	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_22044447_22045780_22045842_22046040_22046168_22080462
ES_00012294	chr12	-	1458	5	FSM	ENSMUSG00000093846.2	ENSMUST00000172838.3	2857	5	2	1397	2	-1397	multi-exon	FALSE	canonical	3	6	junction_1	12.0493775772859	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTTTGAAATGTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	22206645	22167153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_22167822_22173353_22173543_22180145_22180207_22180406_22180534_22206232
ES_00012301	chr12	-	3973	4	Genic_Genomic	ENSMUSG00000113574.2_ENSMUSG00000113569.2	novel	1449	1	NA	NA	-292	1841	multi-exon	FALSE	canonical	3	7	junction_1	18.8030730348939	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTATTTGGATGTTG	NA	False	NA	-8	True	AATAAA	-14	NA	22795704	22773301	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_22776671_22778007_22778069_22778268_22778396_22795288
ES_00012302	chr12	-	1449	1	FSM	ENSMUSG00000113569.2	ENSMUST00000220517.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGAGAGAAACCCTATGA	NA	False	NA	NA	False	NA	NA	NA	22776591	22775142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_22775100_22776600
ES_00012305	chr12	-	998	3	Intergenic	novelGene_854	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	1	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTTGCATGTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	22921774	22919244	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_22920054_22921387_22921449_22921646
ES_00012316	chr12	-	3593	4	NNC	ENSMUSG00000073158.5	novel	2245	4	NA	NA	0	-26821	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	11.8977121983832	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGGTGGTGGTGCACTC	NA	False	NA	NA	False	NA	NA	NA	24147247	24120023	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_24123025_24124359_24124421_24124622_24124750_24146843
ES_00012317	chr12	-	4314	4	Genic_Genomic	ENSMUSG00000112975.2	novel	126	1	NA	NA	-286	39811	multi-exon	FALSE	canonical	3	16	junction_2	4.08248290463863	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTGGTTGTTG	NA	False	NA	NA	False	AATAAA	-14	NA	24302468	24262245	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_24265960_24267293_24267355_24267554_24267682_24302056
ES_00012320	chr12	-	342	1	FSM	ENSMUSG00000066553.6	ENSMUST00000140065.2	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCCTGTGGAGGACTGG	NA	False	NA	NA	False	NA	NA	NA	24689009	24688667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_24688700_24689000
ES_00012323	chr12	-	4812	9	FSM	ENSMUSG00000020642.14	ENSMUST00000062149.6	4812	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	8.26041009877839	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTTGTGGTTTTGCAG	8872	False	NA	NA	False	NA	NA	NA	26465215	26357032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_26360789_26364018_26364109_26367647_26367796_26370950_26371159_26377276_26377338_26377501_26377607_26389304_26389451_26439392_26439575_26465099
ES_00012324	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	2194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	False	NA	-7	True	NA	NA	NA	28685952	28680852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ES_00012325	chr12	-	405	2	FSM	ENSMUSG00000061477.5	ENSMUST00000223153.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	12310	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28681916	28681081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_28681193_28681622
ES_00012326	chr12	-	403	3	FSM	ENSMUSG00000061477.5	ENSMUST00000222808.2	403	3	0	0	0	0	multi-exon	FALSE	canonical	3	12310	junction_1	2151.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28683907	28681081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_28681193_28681622_28681774_28683766
ES_00012327	chr12	-	821	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	0	-1	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685856	28681081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
ES_00012329	chr12	-	3163	12	NNC	ENSMUSG00000020628.17	novel	3230	12	NA	NA	4	12	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_11	34.1772240626429	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGCAAATACGTCAGA	8277	False	NA	-17	True	AATAAA	-32	NA	28800424	28740614	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800359
ES_00012330	chr12	-	3199	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	43	-12	0	12	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGCAAATACGTCAGA	8273	False	NA	-17	True	AATAAA	-32	NA	28800428	28740614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
ES_00012331	chr12	-	3390	12	FSM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	0	-13	0	12	multi-exon	FALSE	canonical	3	61	junction_11	21.61993264567	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGCAAATACGTCAGA	8249	False	NA	-17	True	AATAAA	-32	NA	28800452	28740614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
ES_00012332	chr12	-	3340	6	FSM	ENSMUSG00000044573.17	ENSMUST00000219697.2	668	6	8	-2680	0	130	multi-exon	FALSE	canonical	3	794	junction_3	322.338331571037	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTTTAGCAATATAACAAA	NA	False	NA	NA	False	NA	NA	NA	30961562	30943194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954983_30955067_30955142_30961488
ES_00012334	chr12	-	3367	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	8	-309	0	309	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGTGCTTGGTCTTAG	NA	False	NA	NA	False	AATAAA	-16	NA	30961562	30943015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ES_00012337	chr12	-	2544	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	0	0	0	0	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTACAATTTATATTTATT	NA	False	NA	NA	False	AGTAAA	-18	NA	31401452	31381275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
ES_00012338	chr12	-	3945	6	FSM	ENSMUSG00000020659.17	ENSMUST00000185739.8	3945	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	67.8250691116493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTGGCTCGTGTATT	NA	False	NA	NA	False	AGTAAA	-31	NA	31549556	31534827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542176_31544580_31544749_31549521
ES_00012339	chr12	-	3909	6	FSM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	0	-9	0	9	multi-exon	FALSE	canonical	3	107	junction_4	37.6542162313864	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAGTCTTTAAACCTAAT	NA	False	NA	NA	False	AATAAA	-28	NA	31549615	31534925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
ES_00012340	chr12	-	4127	6	FSM	ENSMUSG00000020659.17	ENSMUST00000064240.14	3937	6	-297	107	-236	0	multi-exon	FALSE	canonical	3	23	junction_4	65.6310901935965	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTAGATGAGTCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	31549851	31534934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544589_31544749_31549521
ES_00012342	chr12	-	1936	7	FSM	ENSMUSG00000020650.16	ENSMUST00000020979.9	1949	7	13	0	13	0	multi-exon	FALSE	canonical	3	313	junction_3	46.7618077780005	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATAATTGGAGTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	31684585	31645359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261
ES_00012345	chr12	-	2733	9	FSM	ENSMUSG00000002996.18	ENSMUST00000167458.9	2733	9	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	33.3164280048147	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCGCTTTCTCTACAT	NA	False	NA	NA	False	AATAAA	-42	NA	32000222	31979381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ES_00012346	chr12	-	1319	6	FSM	ENSMUSG00000002996.18	ENSMUST00000176103.8	1319	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_5	35.2669817251207	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATACCAATTGAAAAT	NA	False	NA	NA	False	NA	NA	NA	32000220	31986457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ES_00012347	chr12	-	979	3	FSM	ENSMUSG00000002996.18	ENSMUST00000175666.2	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	45	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTAGATTGTTTCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	32000233	31989749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31990506_31993827_31994012_32000194
ES_00012350	chr12	-	5548	11	FSM	ENSMUSG00000019256.18	ENSMUST00000116436.9	5548	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	5.59016994374947	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTTTCATGCAAGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	35585037	35547972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_35550700_35553711_35554976_35556243_35556386_35557418_35557529_35558128_35558332_35559964_35560096_35561057_35561170_35562857_35562948_35565019_35565124_35576679_35576868_35584560
ES_00012353	chr12	-	1883	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	-12	0	12	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGTGTTTTATTTATTAG	NA	False	NA	1	True	AATAAA	-33	NA	36206824	36141821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ES_00012356	chr12	-	927	3	NNC	ENSMUSG00000113608.2	novel	549	2	NA	NA	27918	895	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTACATTTAAAGTGT	NA	False	NA	NA	False	AAAAAG	-35	NA	38097816	38096196	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_38096710_38097291_38097424_38097534
ES_00012358	chr12	-	3710	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGCGTTAGACTATCAT	NA	False	NA	0	True	AATAAA	-16	NA	40087428	40083289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_40086833_40087261
ES_00012359	chr12	-	1200	2	FSM	ENSMUSG00000047446.19	ENSMUST00000101472.4	1200	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40088024	40085820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_40086833_40087836
ES_00012360	chr12	-	3400	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	0	-22	0	22	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTCATGAAATGTTGAGA	NA	False	NA	NA	False	ATTAAA	-36	NA	40273188	40251543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ES_00012361	chr12	-	2188	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATTTTTACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	40495901	40365044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
ES_00012363	chr12	-	202	1	Intergenic	novelGene_882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1066	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTTCTCCAGGAAACCA	NA	False	NA	NA	False	AAAAAG	-1	NA	40629486	40629284	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_40629300_40629500
ES_00012365	chr12	-	2335	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	127	-1	127	1	multi-exon	FALSE	canonical	3	92	junction_1	7	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGCTTGGAATGATT	NA	False	NA	NA	False	AATAAA	-17	NA	44256982	44252340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_44254189_44254869_44255097_44256722
ES_00012368	chr12	-	7061	5	FSM	ENSMUSG00000021047.8	ENSMUST00000021438.8	7154	5	0	93	0	-93	multi-exon	FALSE	canonical	3	11	junction_1	3.56195171219375	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTTTACAATAACATAT	NA	False	NA	NA	False	ATTAAA	-43	NA	46865712	46741392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_46747757_46760280_46760353_46767472_46767640_46863668_46863813_46865398
ES_00012369	chr12	-	2119	1	Genic_Genomic	ENSMUSG00000091277.3	novel	NA	NA	NA	NA	3603	1144	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCATTTTGTCAGCACA	NA	False	NA	NA	False	AATAAA	-30	NA	48603065	48600946	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_48600900_48603100
ES_00012371	chr12	-	3241	17	NIC	ENSMUSG00000002688.9	novel	3653	19	NA	NA	159062	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_15	3.89711431702997	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGTCATACTAATCAA	NA	False	NA	-4	True	AATAAA	-14	NA	50536819	50388013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612_50441824_50472221_50472383_50474885_50475018_50536685
ES_00012372	chr12	-	1099	1	FSM	ENSMUSG00000112926.2	ENSMUST00000218047.2	1152	1	61	-8	61	8	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCACAAGGTGCTGCTTC	NA	False	NA	NA	False	ACTAAA	-5	NA	51181424	51180325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_51180300_51181400
ES_00012374	chr12	-	3599	15	NIC	ENSMUSG00000020954.17	novel	2791	16	NA	NA	74	1013	combination_of_known_splicesites	FALSE	canonical	2	2	junction_8	86.6540447376102	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTCTTGGCCACATTA	NA	False	NA	-1	True	AATAAA	-21	NA	51738596	51655401	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
ES_00012375	chr12	-	3046	18	FSM	ENSMUSG00000020954.17	ENSMUST00000013130.15	3046	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	90.4848149144585	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	TTTAAA	-27	NA	51738670	51656414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51680361_51680503_51689886_51689998_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
ES_00012379	chr12	-	8993	43	FSM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	0	-5	0	5	multi-exon	FALSE	canonical	3	48	junction_19	32.7528018915334	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCGTGTTACTGGTT	NA	False	NA	0	True	ATTAAA	-19	NA	51876319	51790499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
ES_00012382	chr12	-	2423	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	141	0	-141	multi-exon	FALSE	canonical	3	170	junction_1	5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCATTGTGAATGGCAG	NA	False	NA	NA	False	NA	NA	NA	52053284	52044430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_52046657_52051661_52051732_52053157
ES_00012383	chr12	-	2662	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTGGTTCATTTCCAT	NA	False	NA	NA	False	NA	NA	NA	54250646	54225766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
ES_00012384	chr12	-	1367	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	-21	0	21	multi-exon	FALSE	canonical	3	293	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGATCAAGTAGTTATTT	NA	False	NA	NA	False	ATTAAA	-38	NA	54703358	54692155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54693321_54703156
ES_00012386	chr12	-	2658	7	FSM	ENSMUSG00000054302.16	ENSMUST00000163433.8	2658	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	149.586559853781	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	54742669	54718439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54718648_54718863_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
ES_00012390	chr12	-	1441	12	FSM	ENSMUSG00000005656.10	ENSMUST00000218934.2	1441	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	317.445589793493	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTTCTGAATATTTT	NA	False	NA	-26	True	GATAAA	-2	NA	54842267	54793434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830799_54830905_54842238
ES_00012396	chr12	-	2746	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	0	-20	0	20	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCATTTAAAACAGTGAAAG	NA	False	NA	17	True	AATAAA	-40	NA	54909583	54905573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
ES_00012397	chr12	-	2950	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	0	-10	0	2	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAGATGTGTTTACTTG	NA	False	NA	-1	True	AATAAA	-22	NA	54909662	54905591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ES_00012398	chr12	-	1128	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909583	54907080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
ES_00012400	chr12	-	584	1	FSM	ENSMUSG00000092233.2	ENSMUST00000173803.2	372	1	-216	4	-216	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGGCTCGCCAGCCGG	NA	False	NA	NA	False	NA	NA	NA	55033530	55032946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55032900_55033500
ES_00012401	chr12	-	1176	3	FSM	ENSMUSG00000062198.6	ENSMUST00000136281.2	1160	3	0	-16	0	1	multi-exon	FALSE	canonical	3	214	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGCTCTTTTATTTGTT	NA	False	NA	2	True	AATAAA	-41	NA	55100886	55092444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55092729_55095671_55095763_55100085
ES_00012403	chr12	-	1132	8	Fusion	ENSMUSG00000062198.6_ENSMUSG00000112022.3	novel	1105	8	NA	NA	-86	-4	multi-exon	FALSE	canonical	3	143	junction_4	24.4423520027957	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTTTGCTCTTTTAT	NA	False	NA	-3	True	AATAAA	-36	NA	55201767	55092449	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
ES_00012406	chr12	-	853	8	FSM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	0	-3	0	3	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55201681	55188890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55189069_55190157_55190218_55192016_55192155_55195887_55196025_55196405_55196482_55196565_55196622_55197660_55197794_55201606
ES_00012407	chr12	-	925	8	FSM	ENSMUSG00000112690.3	ENSMUST00000220144.3	847	8	-78	0	-78	0	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55276823	55263960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55264133_55265221_55265282_55267080_55267219_55270951_55271089_55271469_55271546_55271629_55271686_55272724_55272858_55276670
ES_00012408	chr12	-	238	2	Antisense	novelGene_ENSMUSG00000021023.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGGTAAATTCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	55360124	55297116	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_55297317_55360086
ES_00012409	chr12	-	4216	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCTGGGCTTAGGATC	NA	False	NA	NA	False	TATAAA	-17	NA	55349783	55325775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
ES_00012410	chr12	-	1658	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	18	-2511	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_9	89.6424191641963	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATCTTGCTTACTAGAG	NA	False	NA	NA	False	AATAAA	-28	NA	55349765	55328286	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344591_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
ES_00012416	chr12	-	1607	7	NNC	ENSMUSG00000021025.9	novel	1578	6	NA	NA	0	51276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.1595741761891	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAAGGCAGGGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	55539432	55484918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_55484948_55536194_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ES_00012417	chr12	-	1582	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	-4	0	4	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCGCTCGTTTGCTATT	NA	False	NA	2	True	ATTAAA	-21	NA	55539432	55536190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ES_00012418	chr12	-	898	4	FSM	ENSMUSG00000021025.9	ENSMUST00000219869.2	701	4	-197	0	-197	0	multi-exon	FALSE	canonical	3	207	junction_2	12.2565175405668	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGTGTTCCTCCCCTCA	NA	False	NA	NA	False	NA	NA	NA	55538792	55537191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55537452_55537555_55537645_55537904_55538116_55538454
ES_00012419	chr12	-	7905	42	NNC	ENSMUSG00000021027.18	novel	7901	41	NA	NA	14	60584	intron_retention	FALSE	non_canonical	0	0	junction_1	25.9542222726383	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACAGGTACAATGGCACA	9961	False	NA	NA	False	NA	NA	NA	55867938	55589096	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_55589115_55649683_55651054_55658857_55658889_55659418_55659544_55687368_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188_55724051_55730691_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737_55754894_55755778_55755878_55756298_55756493_55759418_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ES_00012420	chr12	-	7910	41	FSM	ENSMUSG00000021027.18	ENSMUST00000085385.7	7901	41	0	-9	0	6	multi-exon	FALSE	canonical	1	23	junction_22	22.9185514376454	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATCGTATTCTATTGTG	9947	False	NA	-1	True	AATAAA	-34	NA	55867952	55649674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55651054_55658857_55658889_55659418_55659544_55687368_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188_55724051_55730691_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737_55754894_55755778_55755878_55756298_55756493_55759418_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ES_00012428	chr12	-	1455	10	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	0	15907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.811193009831	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAATGTGTTAAGACAT	NA	False	NA	NA	False	NA	NA	NA	56392606	56359180	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_56359213_56375100_56375582_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ES_00012429	chr12	-	1506	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	4	2	4	-2	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCATGTCTTTTTTACT	NA	False	NA	NA	False	AATAAA	-31	NA	56392675	56375089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ES_00012432	chr12	-	231	1	FSM	ENSMUSG00000066491.5	ENSMUST00000149263.2	231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCAGAATACAAAGAATTC	NA	False	NA	NA	False	NA	NA	NA	56420608	56420377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_56420400_56420600
ES_00012433	chr12	-	4133	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	0	-24	0	24	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACTTTGTTCAGTTAAT	2678	False	NA	-3	True	NA	NA	NA	59058803	59005144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
ES_00012440	chr12	-	6441	5	FSM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	18	0	-3	0	multi-exon	FALSE	canonical	3	14	junction_1	2.9474565306379	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTATCATGTAATCATTA	NA	False	NA	-4	True	NA	NA	NA	65012290	64985606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_64990388_64996787_64996997_64998149_64998594_65003612_65004512_65012182
ES_00012441	chr12	-	1121	3	FSM	ENSMUSG00000020949.10	ENSMUST00000223167.2	1109	3	0	-12	0	0	multi-exon	FALSE	canonical	3	9641	junction_1	150.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65113216	65109197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65109515_65110451_65110550_65112510
ES_00012442	chr12	-	6939	3	FSM	ENSMUSG00000020949.10	ENSMUST00000222684.2	6939	3	0	0	0	0	multi-exon	FALSE	canonical	3	9641	junction_1	166.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65117914	65109197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65109515_65110451_65115884_65116724
ES_00012443	chr12	-	1022	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	0	0	0	0	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120781	65109197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ES_00012444	chr12	-	2098	6	FSM	ENSMUSG00000020949.10	ENSMUST00000220957.2	1910	6	-249	61	-242	-4	multi-exon	FALSE	canonical	3	9641	junction_1	352.767005259846	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTACCTTGTAAACTAG	NA	False	NA	-63	True	NA	NA	NA	65118156	65109258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724
ES_00012445	chr12	-	1233	6	FSM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	0	0	0	0	multi-exon	FALSE	canonical	3	9942	junction_1	352.092828668804	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGCTGTCCTCAGGTCC	NA	False	NA	NA	False	CATAAA	-35	NA	65120736	65109878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ES_00012448	chr12	-	3388	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219351	65179507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
ES_00012449	chr12	-	4017	14	FSM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_12	54.2140181439599	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219354	65179507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ES_00012450	chr12	-	5016	13	FSM	ENSMUSG00000047534.18	ENSMUST00000140391.8	5016	13	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_11	56.3414072123395	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219378	65179507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ES_00012455	chr12	-	205	1	Intergenic	novelGene_904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCACGCCTTTAATCCCAC	NA	False	NA	NA	False	NA	NA	NA	69185666	69185461	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_69185500_69185700
ES_00012456	chr12	-	395	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	-5	0	5	multi-exon	FALSE	canonical	3	25458	junction_2	210	4731	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTTTGTTTAGA	NA	False	NA	-5	True	AATAAA	-23	NA	69205960	69204490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69204596_69205434_69205535_69205770
ES_00012457	chr12	-	757	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230760	69229504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69229940_69230438
ES_00012459	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	69230857	69229514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69229940_69230756
ES_00012460	chr12	-	3466	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	-76	0	-76	0	multi-exon	FALSE	canonical	3	240	junction_2	19	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTACCTACATTCTC	NA	False	NA	-8	True	AATAAA	-16	NA	69245279	69235860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69237169_69239581_69239726_69243265
ES_00012461	chr12	-	1722	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	-16	0	16	multi-exon	TRUE	canonical	3	369	junction_1	34.9372011570955	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATGAAAATTTGGTACT	NA	False	NA	11	True	AATAAA	-36	NA	69274969	69248530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ES_00012462	chr12	-	4732	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	0	0	0	0	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCCAACA	NA	False	NA	NA	False	NA	NA	NA	69403939	69357295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ES_00012463	chr12	-	2843	11	FSM	ENSMUSG00000020982.10	ENSMUST00000221794.2	2843	11	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	43.3313973926528	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAACACAAGAA	2065	False	NA	-30	True	NA	NA	NA	69370426	69358341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874
ES_00012464	chr12	-	3909	4	FSM	ENSMUSG00000020982.10	ENSMUST00000221193.2	3909	4	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_2	11.1455023315337	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCACGAGAGGTTTCGTT	9791	False	NA	-8	True	AATACA	-10	NA	69362700	69358430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339
ES_00012465	chr12	-	497	5	FSM	ENSMUSG00000020982.10	ENSMUST00000221112.2	497	5	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_4	15.7241851935164	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGCATGTGAAGAGGAAA	9507	False	NA	NA	False	AGTAAA	-18	NA	69361406	69358799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189
ES_00012466	chr12	-	1340	14	FSM	ENSMUSG00000020982.10	ENSMUST00000222763.2	1340	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	83.598505125221	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403912	69387751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69387831_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ES_00012468	chr12	-	1740	1	FSM	ENSMUSG00000052673.3	ENSMUST00000053451.2	624	1	-476	-640	-466	640	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGTTGCTACAACAGCAT	NA	False	NA	NA	False	AATAAA	-31	NA	69419708	69417968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69418000_69419700
ES_00012469	chr12	-	1085	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	24	0	24	0	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629860	69624401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ES_00012470	chr12	-	1018	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238220.2	1018	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	78.351515620312	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAACGTTGACAATC	NA	False	NA	-59	True	NA	NA	NA	69629791	69624455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629304_69629400_69629494
ES_00012471	chr12	-	1984	2	FSM	ENSMUSG00000034801.14	ENSMUST00000182123.2	2382	2	401	-3	401	3	multi-exon	FALSE	canonical	3	51	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATATTGTTTTTCATC	NA	False	NA	2	True	AATAAA	-28	NA	69633492	69630532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69632407_69633382
ES_00012472	chr12	-	5607	23	FSM	ENSMUSG00000034801.14	ENSMUST00000035773.14	5607	23	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_15	13.7125899802678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTGCAATATTGTT	NA	False	NA	-5	True	AATAAA	-21	NA	69728626	69630539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664955_69673990_69674090_69678833_69678945_69682355_69682500_69686827_69687035_69695225_69695391_69697373_69697506_69704726_69704853_69728288
ES_00012473	chr12	-	6085	23	FSM	ENSMUSG00000034801.14	ENSMUST00000183277.8	4512	23	-486	-1087	-475	0	multi-exon	FALSE	canonical	3	44	junction_4	8.63397096042456	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTGCAATATTGTT	NA	False	NA	-5	True	AATAAA	-21	NA	69729101	69630539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664958_69673990_69674090_69678833_69678945_69682355_69682500_69686827_69687035_69695225_69695391_69697373_69697506_69704726_69704853_69728288
ES_00012474	chr12	-	3340	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ES_00012475	chr12	-	438	4	FSM	ENSMUSG00000020988.10	ENSMUST00000223387.2	438	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	275.076151072551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTCAGGCCTTGTATGA	NA	False	NA	NA	False	AAGAAA	-6	NA	69771547	69759494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69759528_69768085_69768238_69768851_69768985_69771427
ES_00012476	chr12	-	218	2	Antisense	novelGene_ENSMUSG00000054894.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCAGACTTTGATTTGC	NA	False	NA	NA	False	NA	NA	NA	69779801	69760751	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_69760780_69779611
ES_00012481	chr12	-	2524	5	FSM	ENSMUSG00000021067.9	ENSMUST00000021467.8	2524	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_4	6.57171971404746	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGTCCTTGAATGCA	NA	False	NA	-14	True	ATTAAA	-17	NA	70033776	70011785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_70013122_70015843_70015988_70022741_70023013_70030982_70031427_70033447
ES_00012485	chr12	-	6709	30	FSM	ENSMUSG00000021068.18	ENSMUST00000021468.14	6708	30	0	-1	0	0	multi-exon	FALSE	canonical	3	8	junction_13	9.12393202259383	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGTCTTCTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	70158699	70065512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905_70091027_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209_70158257_70158627
ES_00012489	chr12	-	208	1	Intergenic	novelGene_911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTAACTGCCTGGATGC	NA	False	NA	NA	False	NA	NA	NA	70980144	70979936	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_70979900_70980100
ES_00012490	chr12	-	2889	2	Intergenic	novelGene_914	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_1	0	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACAAGGCTGAGACCCG	NA	False	NA	57	True	NA	NA	NA	71056051	71053142	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_71053315_71053334
ES_00012493	chr12	-	794	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
ES_00012494	chr12	-	991	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	-1	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183422	71169946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
ES_00012495	chr12	-	718	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATTGCAAAAATAAACCAC	NA	False	NA	-53	True	NA	NA	NA	71183408	71170069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
ES_00012497	chr12	-	459	1	FSM	ENSMUSG00000021079.17	ENSMUST00000223544.2	1098	1	597	42	559	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	1973	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAGAAAGAAAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	71182812	71182353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71182400_71182800
ES_00012498	chr12	-	3227	1	FSM	ENSMUSG00000043398.6	ENSMUST00000050649.6	3150	1	-135	58	-135	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGTACATTGCTTTG	NA	False	NA	-63	True	NA	NA	NA	72118034	72114807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_72114800_72118000
ES_00012502	chr12	-	1304	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	81	0	-22	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711602	72697126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
ES_00012504	chr12	-	1651	10	NIC	ENSMUSG00000021098.15	novel	1988	19	NA	NA	-1656	226	combination_of_known_junctions	FALSE	canonical	2	5	junction_9	9.91569400769916	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTACTTTCAAACTATC	NA	False	NA	NA	False	NA	NA	NA	72954903	72927656	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952958_72953057_72954594
ES_00012505	chr12	-	503	5	FSM	ENSMUSG00000021098.15	ENSMUST00000143960.8	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	10.779030568655	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTTGAAATGTATGATT	NA	False	NA	NA	False	NA	NA	NA	72953051	72939589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_72939754_72945260_72945308_72945483_72945570_72949989_72950109_72952964
ES_00012506	chr12	-	790	7	FSM	ENSMUSG00000021098.15	ENSMUST00000132901.8	790	7	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_6	10.4827901290109	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCGCTGAAGACACCTG	NA	False	NA	NA	False	NA	NA	NA	72953247	72939643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_72939754_72941757_72941820_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952958
ES_00012507	chr12	-	466	6	FSM	ENSMUSG00000021098.15	ENSMUST00000132016.2	466	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	10.1271911209377	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGAGAATTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	72953045	72939697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_72939754_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952964
ES_00012508	chr12	-	1910	4	NIC	ENSMUSG00000021098.15	novel	1970	6	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	9.42809041582063	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964661	72958432	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964481
ES_00012510	chr12	-	6289	3	FSM	ENSMUSG00000034460.10	ENSMUST00000043208.8	6402	3	110	3	110	-3	multi-exon	FALSE	canonical	3	64	junction_1	15	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTTGTGTTGAAGAAAG	NA	False	NA	-4	True	AATAAA	-15	NA	73160089	73146385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_73151013_73155434_73156124_73159116
ES_00012512	chr12	-	6817	3	FSM	ENSMUSG00000034460.10	ENSMUST00000175693.3	6817	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	8.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGATTCACTCCACATCCC	NA	False	NA	NA	False	NA	NA	NA	73160230	73150214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_73156124_73159116_73159932_73160137
ES_00012513	chr12	-	2066	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	False	NA	-6	True	AATAAA	-21	NA	73333483	73326784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
ES_00012514	chr12	-	6253	14	NNC	ENSMUSG00000021051.11	novel	4810	14	NA	NA	0	1418	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	53.6105836058162	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGCCTGGCTGCTTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	75643002	75496236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640104_75642408
ES_00012515	chr12	-	6268	14	NNC	ENSMUSG00000021051.11	novel	4810	14	NA	NA	-10	1418	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	50.8484230844725	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGCCTGGCTGCTTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	75643029	75496236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_75500588_75506476_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408
ES_00012516	chr12	-	4810	14	FSM	ENSMUSG00000021051.11	ENSMUST00000021447.9	4810	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_9	26.0225209699817	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACTGGATGCAGGGATA	NA	False	NA	NA	False	AATAAA	-33	NA	75642974	75497654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408
ES_00012517	chr12	-	1382	3	FSM	ENSMUSG00000021051.11	ENSMUST00000218930.2	1382	3	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTTCTCTTTGTAATTT	NA	False	NA	NA	False	NA	NA	NA	75643002	75561948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_75562573_75639942_75640107_75642408
ES_00012519	chr12	-	477	2	NNC	ENSMUSG00000045690.9	novel	2979	2	NA	NA	38159	49098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATATAGATAAGATTT	NA	False	NA	NA	False	NA	NA	NA	75678142	75628271	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_75628298_75677691
ES_00012520	chr12	-	2981	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	0	-2	0	2	multi-exon	FALSE	canonical	3	148	junction_1	0	3225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6410	False	NA	0	True	AATAAA	-19	NA	75716311	75677367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_75680283_75716245
ES_00012523	chr12	-	904	5	NIC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	7956	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	11.9242400177118	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAATCTCTTCTCTCCT	5948	False	NA	NA	False	AATAAA	-17	NA	76268282	76245466	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_76245726_76259148_76259332_76261186_76261493_76263736_76263867_76268256
ES_00012524	chr12	-	7091	1	NIC	ENSMUSG00000021056.9	novel	707	4	NA	NA	29	-809	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCACCTCTCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	76276209	76269118	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_76269100_76276200
ES_00012528	chr12	-	1684	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176278.8	1672	3	0	-12	0	11	multi-exon	FALSE	canonical	3	78	junction_2	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTATACATTAAATCATA	NA	False	NA	10	True	ATTAAA	-28	NA	76416376	76395706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76397048_76402662_76402843_76416213
ES_00012529	chr12	-	5251	18	ISM	ENSMUSG00000021061.16	ENSMUST00000021458.13	10394	36	91395	15642	-35066	0	internal_fragment	FALSE	canonical	3	10	junction_14	4.60780141825086	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTCTCTGGGGGAGGAA	2776	False	NA	NA	False	AATAAA	-17	NA	76665926	76642903	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655472_76655814_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337_76660095_76665812
ES_00012530	chr12	-	3101	8	NNC	ENSMUSG00000021062.16	novel	3158	7	NA	NA	0	24219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.7596133534821	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAGAAAAAACAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	76869236	76820514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_76820551_76844735_76847176_76847339_76847406_76848665_76848756_76849841_76849920_76850341_76850403_76851216_76851278_76868967
ES_00012531	chr12	-	1014	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	0	-4	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTCTCTGTCTTCCTTT	NA	False	NA	-1	True	AATAAA	-20	NA	76842273	76839106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76839775_76841927
ES_00012532	chr12	-	3325	7	FSM	ENSMUSG00000021062.16	ENSMUST00000021459.14	3158	7	-167	0	-167	0	multi-exon	FALSE	canonical	3	60	junction_1	4.01732359773132	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGTGGGTCTGTATGAA	NA	False	NA	-2	True	AATAAA	-18	NA	76869494	76844733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76847176_76847339_76847406_76848665_76848756_76849841_76849920_76850341_76850403_76851216_76851278_76868967
ES_00012533	chr12	-	1942	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008959	76984042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
ES_00012535	chr12	-	1140	1	FSM	ENSMUSG00000112150.2	ENSMUST00000219513.2	2599	1	8	1451	8	-1451	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGAAGTCAGAATTATGA	NA	False	NA	NA	False	AAAACA	-31	NA	77285429	77284289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_77284300_77285400
ES_00012537	chr12	-	1475	1	FSM	ENSMUSG00000112302.2	ENSMUST00000219034.2	4240	1	-72	2837	-72	-2837	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAAGCTTTCAAGTCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	78273371	78271896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_78271900_78273400
ES_00012541	chr12	-	2339	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136425	79127437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
ES_00012542	chr12	-	2868	3	FSM	ENSMUSG00000021120.12	ENSMUST00000217998.2	2868	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAGAAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79136419	79128021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79130474_79132420_79132631_79136213
ES_00012544	chr12	-	1059	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTTTACAGTTGTGAG	NA	False	NA	84	True	AATACA	-36	NA	79219222	79202943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
ES_00012545	chr12	-	3011	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	422	-171	-78	171	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGTTATGCAGTTAT	NA	False	NA	NA	False	ATTAAA	-24	NA	79238645	79220939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
ES_00012546	chr12	-	9369	42	FSM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	22	0	0	0	multi-exon	TRUE	canonical	3	23	junction_36	10.4802014412253	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTAGCTTCATCAGCTT	NA	False	NA	-5	True	AATAAA	-17	NA	79343056	79279119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244_79293393_79296236_79296458_79297927_79298065_79298922_79298955_79302003_79302141_79304188_79304353_79307574_79307674_79308351_79308599_79310546_79310724_79311084_79311208_79312461_79312567_79313131_79313329_79315132_79315876_79317611_79317715_79318840_79319060_79320066_79320232_79320330_79320451_79321625_79321890_79323016_79323219_79325181_79325334_79325863_79325933_79326816_79326904_79327130_79327740_79329575_79329777_79330809_79330974_79332032_79332122_79332255_79332421_79332979_79333102_79334148_79334654_79337647_79337738_79340599_79340679_79342250_79342547_79342999
ES_00012551	chr12	-	974	4	FSM	ENSMUSG00000015143.16	ENSMUST00000219634.2	1034	4	60	0	60	0	multi-exon	TRUE	canonical	3	154	junction_2	69.3733858671081	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTACGTTAAAAAAAAATTT	2298	False	NA	NA	False	NA	NA	NA	80218858	80214876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80215255_80215631_80215791_80217459_80217541_80218502
ES_00012552	chr12	-	2664	21	FSM	ENSMUSG00000015143.16	ENSMUST00000167327.2	2664	21	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	39.4366263770115	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCCCTGCCTCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	80306865	80215095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80215255_80215631_80215791_80216956_80217023_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
ES_00012553	chr12	-	5704	9	FSM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	2	0	2	0	multi-exon	FALSE	canonical	3	23	junction_5	6.59071316323203	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGCCTTCCTCCTCTCT	NA	False	NA	-2	True	AATAAA	-16	NA	80483373	80382621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80387051_80395093_80395222_80410777_80410845_80423291_80423506_80444426_80444557_80445542_80445683_80446722_80446760_80451328_80451473_80482958
ES_00012554	chr12	-	337	4	FSM	ENSMUSG00000049106.8	ENSMUST00000218498.2	337	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	17.931970208417	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGCCAGCTCTTCAGAT	NA	False	NA	NA	False	NA	NA	NA	80483219	80445608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80445683_80446722_80446760_80451328_80451473_80483137
ES_00012555	chr12	-	1293	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	0	0	0	0	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	1019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	False	NA	-1	True	AATAAA	-31	NA	80691115	80680795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ES_00012556	chr12	-	506	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATGATAGCGATCCTG	NA	False	NA	NA	False	NA	NA	NA	80690606	80681130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
ES_00012557	chr12	-	691	1	FSM	ENSMUSG00000112263.2	ENSMUST00000217770.2	575	1	122	-238	122	238	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGTAAGACCAGCACAG	NA	False	NA	NA	False	NA	NA	NA	80695863	80695172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80695200_80695900
ES_00012559	chr12	-	1096	3	FSM	ENSMUSG00000112880.2	ENSMUST00000219062.2	1118	3	44	-22	44	22	multi-exon	FALSE	canonical	2	4	junction_2	3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGGAGAGAAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	80992126	80989424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80989717_80989815_80990004_80991510
ES_00012561	chr12	-	1043	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAAATTGCTCTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	81579679	81405633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ES_00012562	chr12	-	673	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	-5	0	5	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCAGTGTTCCATTGG	998	False	NA	-41	True	AATAAA	-24	NA	81531884	81405794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
ES_00012563	chr12	-	691	5	NIC	ENSMUSG00000021139.18	novel	1043	6	NA	NA	8	-179	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	124.884696820707	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATAAAAATGTTATGATG	NA	False	NA	-59	True	AATAAA	-6	NA	81579643	81405812	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81579489
ES_00012564	chr12	-	1009	1	FSM	ENSMUSG00000067224.4	ENSMUST00000087222.4	1009	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	1938	False	NA	NA	False	NA	NA	NA	81419995	81418986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81419000_81420000
ES_00012565	chr12	-	2284	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTCAACAGTGTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	81579656	81517376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ES_00012566	chr12	-	2007	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAACTAAAGACAAAGA	988	False	NA	NA	False	NA	NA	NA	81531894	81517477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
ES_00012567	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	995	False	NA	-6	True	ATTAAA	-14	NA	81531887	81518866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
ES_00012569	chr12	-	5938	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	31	-1314	0	1314	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTATTTGCCAGCAG	NA	False	NA	NA	False	AATAAA	-14	NA	81579654	81543400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
ES_00012570	chr12	-	5828	3	FSM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	-8	-2515	4	1314	multi-exon	FALSE	canonical	3	34	junction_2	56.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTATTTGCCAGCAG	NA	False	NA	NA	False	AATAAA	-14	NA	81579681	81543400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81548941_81551317_81551414_81579489
ES_00012573	chr12	-	2262	1	FSM	ENSMUSG00000113184.2	ENSMUST00000221438.2	2223	1	-18	-21	-18	21	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCCTGGCATGGATACC	NA	False	NA	NA	False	AATAAA	-39	NA	81766844	81764582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81764600_81766800
ES_00012574	chr12	-	4563	11	FSM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	1	0	1	0	multi-exon	FALSE	canonical	3	48	junction_4	4.27083130081252	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGCCGTGAGGCAGTAG	NA	False	NA	NA	False	AGTAAA	-20	NA	81827948	81767783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
ES_00012575	chr12	-	212	1	Intergenic	novelGene_940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTTCTTTTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	82500214	82500002	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_82500000_82500200
ES_00012576	chr12	-	527	1	FSM	ENSMUSG00000094374.3	ENSMUST00000179295.3	1150	1	987	-364	987	364	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTATGTGGTTATATTT	NA	False	NA	NA	False	NA	NA	NA	82542324	82541797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_82541800_82542300
ES_00012578	chr12	-	4036	12	FSM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_11	24.5928834697229	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCCATCGTATGGATC	NA	False	NA	NA	False	TTTAAA	-3	NA	83643996	83593622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643770
ES_00012581	chr12	-	238	1	FSM	ENSMUSG00000099708.2	ENSMUST00000183323.3	2000	1	1418	344	1418	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATAGTCTCCGCCGTCGC	NA	False	NA	NA	False	NA	NA	NA	83679189	83678951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_83679000_83679200
ES_00012582	chr12	-	3623	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.4936888944748	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTATAGTTCTGTTTTTA	NA	False	NA	0	True	NA	NA	NA	83968687	83840807	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ES_00012583	chr12	-	3543	11	FSM	ENSMUSG00000021224.16	ENSMUST00000117217.8	3549	11	18	-12	18	12	multi-exon	FALSE	canonical	3	42	junction_6	36.1696004954437	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTAATCTCTCTTTTT	NA	False	NA	12	True	NA	NA	NA	83968690	83840795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ES_00012584	chr12	-	3448	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	27.6550176279098	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTATAGTTCTGTTTT	NA	False	NA	-2	True	NA	NA	NA	83968661	83840809	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ES_00012586	chr12	-	784	9	FSM	ENSMUSG00000021224.16	ENSMUST00000155112.8	784	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	28.9136645896019	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGTTTAGAGCGTAAACA	NA	False	NA	NA	False	NA	NA	NA	83968641	83850719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ES_00012588	chr12	-	681	1	FSM	ENSMUSG00000054383.3	ENSMUST00000061425.3	2359	1	1456	222	1456	-222	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCTCGGACTAAAAGTGG	230	False	NA	NA	False	NA	NA	NA	84193807	84193126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84193100_84193800
ES_00012589	chr12	-	7395	13	FSM	ENSMUSG00000042507.16	ENSMUST00000110294.2	7156	13	-128	-111	-128	9	multi-exon	TRUE	canonical	3	72	junction_9	16.3681601491025	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTTGAATACCACATT	NA	False	NA	-2	True	ATTAAA	-19	NA	84240917	84195940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527_84221198_84240272
ES_00012593	chr12	-	4884	15	FSM	ENSMUSG00000021236.17	ENSMUST00000120942.8	4881	15	0	-3	0	0	multi-exon	TRUE	canonical	2	7	junction_13	11.8983792413685	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTCCTTTGGGTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	84455788	84420648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179_84452250_84455743
ES_00012594	chr12	-	4968	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	0	4	0	-1	multi-exon	FALSE	canonical	3	43	junction_8	4.47014789713072	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATAGTTTTCCTTTGGGT	NA	False	NA	NA	False	AATAAA	-15	NA	84455803	84420652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
ES_00012595	chr12	-	3364	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	37	-2	0	2	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTTTCCTTCTTTTGTT	NA	False	NA	NA	False	AATAAA	-35	NA	84497740	84477488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
ES_00012597	chr12	-	2184	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	30	junction_16	51.6547659345195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	84664144	84649304	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
ES_00012598	chr12	-	2309	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	84664144	84649426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
ES_00012603	chr12	-	3302	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	0	-3	0	3	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTGGATGCCTGATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84819926	84801332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ES_00012606	chr12	-	5272	19	FSM	ENSMUSG00000042350.14	ENSMUST00000163231.8	5262	19	0	-10	0	10	multi-exon	TRUE	canonical	0	0	junction_18	31.0521763218134	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTGAGTGGGGGGTGG	NA	False	NA	NA	False	AATAAA	-28	NA	85017598	84964911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017402
ES_00012607	chr12	-	725	4	FSM	ENSMUSG00000042350.14	ENSMUST00000167448.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	39.1606378338703	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGAAGGACCCCTATGA	NA	False	NA	NA	False	NA	NA	NA	85017630	84988555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84988732_84990105_84990167_84997826_84998156_85017471
ES_00012608	chr12	-	2034	5	FSM	ENSMUSG00000019235.10	ENSMUST00000222232.2	2034	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	53.5957087834465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTCAGTTCTTCTCAGG	1091	False	NA	-3	True	NA	NA	NA	85186763	85182407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185520_85185851
ES_00012609	chr12	-	1749	7	NNC	ENSMUSG00000019235.10	novel	2034	5	NA	NA	-498	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	21	junction_6	58.0308825827536	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTCAGTTCTTCTCAGG	593	False	NA	-3	True	NA	NA	NA	85187261	85182407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_85183083_85183116_85183258_85183519_85183616_85185204_85185288_85185426_85185520_85185851_85186369_85187117
ES_00012610	chr12	-	1829	6	ISM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	10785	402	-490	-11	3prime_fragment	FALSE	canonical	3	114	junction_5	16.4073154415949	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGCTCCACAGGACCAGC	601	False	NA	-20	True	AATAAA	-39	NA	85187253	85182424	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ES_00012612	chr12	-	5463	12	FSM	ENSMUSG00000021245.16	ENSMUST00000019378.8	5463	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	14.4554030620371	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTTGTTTTTGAAAATG	NA	False	NA	NA	False	AATAAA	-15	NA	85317373	85281293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85317312
ES_00012613	chr12	-	666	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	0	-18	0	18	multi-exon	FALSE	canonical	3	386	junction_2	28.5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAATCCTTAGTGAACT	4291	False	NA	18	True	AATAAA	-42	NA	85327209	85319153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85319602_85326764_85326857_85327083
ES_00012615	chr12	-	1643	6	NNC	ENSMUSG00000021248.10	novel	1482	5	NA	NA	-130	22557	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	534.282097772328	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCACTAATAACTTAGTCA	8334	False	NA	NA	False	NA	NA	NA	85421751	85364830	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_85364858_85389557_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ES_00012617	chr12	-	3137	3	FSM	ENSMUSG00000021248.10	ENSMUST00000222529.2	3181	3	44	0	44	0	multi-exon	FALSE	canonical	3	1293	junction_2	27.5	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGGTGTATTTGTCTGT	NA	False	NA	-1	True	AATAAA	-16	NA	85397650	85387387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85390324_85390998_85391126_85397576
ES_00012618	chr12	-	1482	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8464	False	NA	-5	True	ATTAAA	-20	NA	85421621	85389561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ES_00012620	chr12	-	472	1	FSM	ENSMUSG00000113165.2	ENSMUST00000223391.2	2173	1	30	1671	30	-1671	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCAGTGGCTGGCCCA	NA	False	NA	NA	False	AATGAA	-39	NA	85645935	85645463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85645500_85645900
ES_00012623	chr12	-	3846	11	NNC	ENSMUSG00000021257.15	novel	3850	10	NA	NA	-25	-6	at_least_one_novel_splicesite	FALSE	non_canonical	3	44	junction_1	15.937691175324	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTACGTTGTTAGCCTTG	NA	False	NA	-6	True	AATAAA	-13	NA	86773259	86747281	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_86748096_86748118_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
ES_00012625	chr12	-	483	2	FSM	ENSMUSG00000113555.2	ENSMUST00000222765.2	483	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACACAAAGAAATAAAAA	3781	False	NA	NA	False	NA	NA	NA	86893241	86892551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_86892971_86893177
ES_00012630	chr12	-	587	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8462	55	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_2	15.7973274814304	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTATATGTCAGTATTCT	NA	False	NA	-15	True	AATAAA	-13	NA	87271868	87267973	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_87268219_87269818_87269953_87270931_87271084_87271812
ES_00012631	chr12	-	3201	20	FSM	ENSMUSG00000021038.18_ENSMUSG00000072919.5	ENSMUST00000072744.15	2524	20	3	-680	0	675	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTTTGCAGTCATCC	NA	False	NA	NA	False	GATAAA	-20	NA	87313027	87284966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ES_00012632	chr12	-	1792	12	FSM	ENSMUSG00000021038.18	ENSMUST00000222350.2	1790	12	0	-2	0	2	multi-exon	FALSE	canonical	3	88	junction_1	4.43874749663044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATCTTATTTACTTGTCT	NA	False	NA	NA	False	NA	NA	NA	87313027	87295301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ES_00012633	chr12	-	2526	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7669	False	NA	1	True	AATAAA	-21	NA	87346479	87325411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
ES_00012636	chr12	-	3789	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	2	-1908	0	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490596	87472938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ES_00012637	chr12	-	3857	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490609	87472938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ES_00012638	chr12	-	2157	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	0	-3	0	0	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490606	87474846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ES_00012639	chr12	-	2048	7	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	11	-12	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	109.640954432588	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTTAAATTAAAGACCT	NA	False	NA	-68	True	AATAAA	-7	NA	87490585	87474861	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
ES_00012642	chr12	-	2232	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519044	87496679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ES_00012644	chr12	-	815	1	FSM	ENSMUSG00000113280.2	ENSMUST00000220638.2	855	1	26	14	26	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTCAAGAAGGAGCGC	NA	False	NA	NA	False	AAAACA	-16	NA	87733047	87732232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87732200_87733000
ES_00012646	chr12	-	435	1	FSM	ENSMUSG00000095799.2	ENSMUST00000179468.2	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACCTAAGCATGCTACC	NA	False	NA	NA	False	NA	NA	NA	88216870	88216435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_88216400_88216900
ES_00012647	chr12	-	1757	2	FSM	ENSMUSG00000093847.3	ENSMUST00000218054.3	1856	2	47	52	47	-52	multi-exon	FALSE	canonical	2	4	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGGTGTATAATGAAAATA	NA	False	NA	NA	False	TATAAA	-31	NA	88290749	88286943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_88288562_88290610
ES_00012648	chr12	-	4685	25	NIC	ENSMUSG00000061533.17	novel	4807	26	NA	NA	-14	1	combination_of_known_splicesites	TRUE	canonical	2	6	junction_21	14.1507263260779	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATGATGCGTCTGTTA	6188	False	NA	-4	True	AATAAA	-20	NA	91351147	90965264	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91333116_91333279_91336835_91336971_91348421_91348563_91351007
ES_00012652	chr12	-	6045	10	NNC	ENSMUSG00000020962.15	novel	6064	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	336.998003437688	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATTTTGCAGTTT	1244	False	NA	0	True	AATAAA	-23	NA	91556784	91522035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308_91556410_91556429
ES_00012653	chr12	-	245	1	FSM	ENSMUSG00000080365.3	ENSMUST00000116715.3	143	1	-193	91	-193	-91	mono-exon	FALSE	NA	NA	NA	NA	NA	683	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAAATTAAAATTGACTT	NA	False	NA	NA	False	NA	NA	NA	91540539	91540294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91540300_91540500
ES_00012656	chr12	-	6306	21	FSM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	0	-6	0	6	multi-exon	FALSE	canonical	3	285	junction_17	38.6834589973544	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCGTGTGCCACATTCAA	NA	False	NA	-18	True	AATAAA	-24	NA	91815931	91772810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
ES_00012657	chr12	-	5544	21	FSM	ENSMUSG00000020964.15	ENSMUST00000167466.2	5544	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	69.9646339231472	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91815903	91773394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799978_91799997_91808411_91808629_91809999_91810038_91815732
ES_00012658	chr12	-	678	1	FSM	ENSMUSG00000094935.3	ENSMUST00000180321.3	678	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTCCCCAGAACTGATG	NA	False	NA	NA	False	NA	NA	NA	93895444	93894766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_93894800_93895400
ES_00012659	chr12	-	795	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	2	-161	2	161	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGTTATGTTGAAACAAA	NA	False	NA	NA	False	NA	NA	NA	96889830	96889035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_96889000_96889800
ES_00012660	chr12	-	3797	17	FSM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	53	-18	53	18	multi-exon	FALSE	canonical	3	22	junction_3	6.15648793956424	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTCTGGATTAATGGG	NA	False	NA	NA	False	NA	NA	NA	98225665	98168534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
ES_00012661	chr12	-	1367	7	FSM	ENSMUSG00000021003.11	ENSMUST00000220501.2	4439	7	0	3072	0	-3072	multi-exon	FALSE	canonical	1	2	junction_6	12.8246724021404	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGTGCGATTTACTTTG	NA	False	NA	NA	False	NA	NA	NA	98225042	98208900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98224232
ES_00012662	chr12	-	5705	19	FSM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	-7	-2	-7	1	multi-exon	FALSE	canonical	3	8	junction_18	9.45636502606434	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGTGTTCCTGTTGCAAT	NA	False	NA	2	True	ATTAAA	-17	NA	98700911	98642998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732_98700094_98700728
ES_00012673	chr12	-	3126	3	FSM	ENSMUSG00000021176.7	ENSMUST00000221801.2	3131	3	5	0	5	0	multi-exon	FALSE	canonical	3	83	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	99849757	99841848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_99844662_99849020_99849117_99849540
ES_00012677	chr12	-	3281	20	NNC	ENSMUSG00000033530.9	novel	3446	20	NA	NA	26	0	intron_retention	FALSE	canonical	3	12	junction_18	51.1991927741075	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTTTTGTCTTTCA	NA	False	NA	-1	True	AATAAA	-21	NA	100486924	100267028	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100413118_100413241_100432438_100432570_100461530_100461696_100466334_100466490_100486829
ES_00012678	chr12	-	3442	20	FSM	ENSMUSG00000033530.9	ENSMUST00000062957.8	3446	20	4	0	0	0	multi-exon	FALSE	canonical	3	208	junction_10	15.649378488982	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTTTTGTCTTTCA	NA	False	NA	-1	True	AATAAA	-21	NA	100487081	100267028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100413118_100413241_100432438_100432570_100461530_100461700_100466334_100466490_100486829
ES_00012680	chr12	-	5648	17	FSM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	0	-6	0	6	multi-exon	TRUE	canonical	3	13	junction_6	9.17196816392207	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAGTATTTTATAAAAGC	NA	False	NA	2	True	AATAAA	-25	NA	100691379	100514691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
ES_00012681	chr12	-	1221	8	NIC	ENSMUSG00000021180.10	novel	1039	8	NA	NA	26	23	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	9.9979589753844	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTTTCAAGATTACATAT	NA	False	NA	NA	False	NA	NA	NA	100691353	100560619	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_100560824_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
ES_00012682	chr12	-	507	1	FSM	ENSMUSG00000113113.2	ENSMUST00000223227.2	403	1	-49	-55	-49	55	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGTATCCACAACATAAT	NA	False	NA	NA	False	AATAAA	-25	NA	100711243	100710736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_100710700_100711200
ES_00012684	chr12	-	7550	30	FSM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	0	-8	0	8	multi-exon	TRUE	canonical	3	67	junction_4	21.6322633049711	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTCTTCAGTAAATGC	NA	False	NA	5	True	AATAAA	-25	NA	100995315	100877773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
ES_00012685	chr12	-	10952	30	NIC	ENSMUSG00000021182.17	novel	7542	30	NA	NA	-136	4	intron_retention	FALSE	canonical	3	38	junction_5	24.7293554827487	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGTTTTCTTCAGTAA	NA	False	NA	1	True	AATAAA	-21	NA	100995451	100877777	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100888450_100891910_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
ES_00012687	chr12	-	4539	15	FSM	ENSMUSG00000041846.16	ENSMUST00000048305.10	4516	15	0	-23	0	23	multi-exon	FALSE	canonical	3	387	junction_8	78.1559142917253	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTTTGGGTCTGGTGA	8811	False	NA	NA	False	AATAAA	-36	NA	101049922	101005644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019726_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
ES_00012689	chr12	-	4083	15	FSM	ENSMUSG00000041846.16	ENSMUST00000163095.9	4083	15	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	127.060085416792	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGCCTAACGTGCTGG	8777	False	NA	NA	False	ATTAAA	-14	NA	101049956	101006173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
ES_00012692	chr12	-	9853	21	FSM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	20	0	20	0	multi-exon	TRUE	canonical	3	11	junction_20	4.94064773081425	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTTCGTCCACAATAA	7441	False	NA	NA	False	AATAAA	-17	NA	101879506	101800301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845189_101849514_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
ES_00012696	chr12	-	1005	9	FSM	ENSMUSG00000021189.12	ENSMUST00000161011.8	1000	9	0	-5	0	3	multi-exon	FALSE	canonical	3	289	junction_2	19.5380238253514	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTCTGTTTATAAATTA	NA	False	NA	3	True	ATTAAA	-24	NA	101924502	101899179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ES_00012698	chr12	-	861	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221422.2	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	1653	junction_2	166	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGATTCTTTTATTTATT	NA	False	NA	3	True	AATAAA	-32	NA	101942513	101934348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101934470_101935751_101935897_101941918
ES_00012699	chr12	-	819	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	-288	-20	39	0	multi-exon	FALSE	canonical	3	411	junction_2	787	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGATTCTTTTATTTATT	NA	False	NA	3	True	AATAAA	-32	NA	101942474	101934348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101934470_101935751_101935894_101941918
ES_00012700	chr12	-	1982	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	29	-21	29	7	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGTTTGTGTTTTA	7518	False	NA	4	True	AAAACA	-36	NA	102406043	102360335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
ES_00012701	chr12	-	529	6	FSM	ENSMUSG00000021190.15	ENSMUST00000146499.2	798	6	269	0	269	0	multi-exon	FALSE	canonical	3	398	junction_4	38.2361085886103	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGCCCTCAGGCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	102372136	102366360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054
ES_00012702	chr12	-	2920	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	0	-2	0	2	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACGTGGTCACAGTCTT	2407	False	NA	1	True	AATAAA	-22	NA	102671189	102534838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
ES_00012705	chr12	-	950	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	123	junction_1	57	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6362	False	NA	-1	True	AATAAA	-20	NA	102724059	102719533	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_102719709_102719910_102720426_102723799
ES_00012706	chr12	-	1154	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	-2	0	2	multi-exon	FALSE	canonical	3	237	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCTGTAGCCTCTTTT	6362	False	NA	1	True	AATAAA	-22	NA	102724059	102719531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102720426_102723799
ES_00012714	chr12	-	1183	3	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	10035	-3	10035	-1	3prime_fragment	FALSE	canonical	3	27	junction_2	7	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGCCCTGTGATTCCT	NA	False	NA	-3	True	AATAAA	-14	NA	103291808	103287401	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_103287934_103290021_103290176_103291311
ES_00012715	chr12	-	3064	9	FSM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	0	-1	0	0	multi-exon	FALSE	canonical	1	1	junction_8	279.990624843047	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392039	103374240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103391784
ES_00012716	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392078	103374240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
ES_00012718	chr12	-	1437	2	FSM	ENSMUSG00000041645.15	ENSMUST00000220705.2	4274	2	0	2837	0	894	multi-exon	FALSE	canonical	3	750	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAAAAACTCTTAACATG	NA	False	NA	NA	False	NA	NA	NA	103392089	103389471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103390857_103392037
ES_00012719	chr12	-	443	4	FSM	ENSMUSG00000079017.4	ENSMUST00000055071.9	463	4	20	0	20	0	multi-exon	FALSE	canonical	1	2	junction_1	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTGGTGGCTCTTT	6314	False	NA	NA	False	AAAACA	-28	NA	103409919	103408425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103408643_103409090_103409253_103409740_103409771_103409885
ES_00012721	chr12	-	9856	27	FSM	ENSMUSG00000041415.12	ENSMUST00000041987.8	9851	27	0	-5	0	5	multi-exon	FALSE	canonical	3	28	junction_26	55.5751530194573	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTAGCTTTGTTTTTT	4410	False	NA	-3	True	AATAAA	-21	NA	104718211	104653995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104718006
ES_00012722	chr12	-	10169	29	NIC	ENSMUSG00000041415.12	novel	9851	27	NA	NA	-151	3	combination_of_known_junctions	FALSE	canonical	3	188	junction_19	35.6787501783024	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTAGCTTTGTTTT	4259	False	NA	-5	True	AATAAA	-19	NA	104718362	104653997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104704027_104704126_104705041_104705108_104718006
ES_00012723	chr12	-	10071	28	NIC	ENSMUSG00000041415.12	novel	9851	27	NA	NA	-151	3	combination_of_known_junctions	FALSE	canonical	3	34	junction_26	53.666423842203	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTAGCTTTGTTTT	4259	False	NA	-5	True	AATAAA	-19	NA	104718362	104653997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104705041_104705108_104718006
ES_00012724	chr12	-	1460	9	FSM	ENSMUSG00000041415.12	ENSMUST00000222002.3	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_7	17.5552698640608	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAATTGAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	104705096	104688342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104704027_104704126_104705041
ES_00012726	chr12	-	525	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	0	2	0	-2	multi-exon	FALSE	canonical	3	45	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGTGTGTCTCGTCTAC	8338	False	NA	NA	False	NA	NA	NA	104998536	104996877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104997085_104998218
ES_00012727	chr12	-	381	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222672.2	381	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATAAATGCTGGCAGT	8336	False	NA	NA	False	NA	NA	NA	104998538	104996908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104997085_104998333
ES_00012729	chr12	-	1299	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188975	105183016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_105183961_105184917_105185089_105188791
ES_00012735	chr12	-	7467	42	NNC	ENSMUSG00000041341.11	novel	7546	42	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_23	14.1955410213893	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTGTATACGTCCATG	NA	False	NA	2	True	AATAAA	-21	NA	105651461	105582394	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630_105611738_105612782_105612864_105613011_105613212_105614571_105614723_105615247_105615348_105615733_105615892_105617639_105617783_105618317_105618514_105618787_105618891_105620267_105620542_105624225_105624415_105624526_105624620_105625096_105625248_105627258_105627521_105628873_105628977_105629065_105629221_105630182_105630369_105630902_105631000_105632855_105633036_105635522_105635686_105636933_105637037_105637734_105637888_105641109_105641273_105650927
ES_00012736	chr12	-	2755	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145573	108072689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ES_00012737	chr12	-	3215	5	FSM	ENSMUSG00000056770.16	ENSMUST00000148119.8	3056	5	-159	0	-23	0	multi-exon	FALSE	canonical	3	471	junction_1	36.8069286955595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGTTTACTTTTTG	NA	False	NA	-67	True	CATAAA	-26	NA	108081365	108072924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577
ES_00012739	chr12	-	636	7	FSM	ENSMUSG00000056770.16	ENSMUST00000125916.3	636	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	213.341406097259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGCTATGGGAAACATT	NA	False	NA	NA	False	NA	NA	NA	108145472	108124242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108133531_108133655_108145411
ES_00012743	chr12	-	2722	1	FSM	ENSMUSG00000114045.2	ENSMUST00000223001.2	2709	1	-49	36	-49	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGTTCATAAATAAAGGA	7274	False	NA	NA	False	AATGAA	-7	NA	108758718	108755996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108756000_108758700
ES_00012744	chr12	-	1951	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	22	3	22	-3	multi-exon	FALSE	canonical	3	8	junction_1	5.09901951359278	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGAAGCTCCTCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	108801787	108791801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
ES_00012745	chr12	-	2841	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	0	-10	0	10	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCAAGCAGGCCACAGAG	NA	False	NA	-21	True	AATAAA	-29	NA	108860100	108825945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ES_00012747	chr12	-	1892	11	NIC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108860100	108825959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ES_00012749	chr12	-	760	2	Genic_Genomic	ENSMUSG00000113625.2	novel	642	1	NA	NA	0	40420	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACAACAAGAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109861527	109820465	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_109820493_109860794
ES_00012750	chr12	-	759	2	Genic_Genomic	ENSMUSG00000113625.2	novel	642	1	NA	NA	0	40420	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACAACAAGAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109861527	109820465	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_109820492_109860794
ES_00012751	chr12	-	761	2	Genic_Genomic	ENSMUSG00000113625.2	novel	642	1	NA	NA	0	40420	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACAACAAGAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109861527	109820465	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_109820494_109860794
ES_00012752	chr12	-	773	1	FSM	ENSMUSG00000113625.2	ENSMUST00000222259.2	642	1	-40	-91	-40	91	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGACCTGTCAGGTCACT	NA	False	NA	NA	False	AATAAA	-42	NA	109861567	109860794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_109860800_109861600
ES_00012753	chr12	-	1375	4	FSM	ENSMUSG00000113581.2	ENSMUST00000222401.2	1380	4	0	5	0	-5	multi-exon	FALSE	canonical	1	5	junction_3	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAAACGTGTACAGTG	NA	False	NA	NA	False	AATAAA	-10	NA	110244606	110241826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110242012_110243059_110243861_110243984_110244184_110244416
ES_00012755	chr12	-	530	2	FSM	ENSMUSG00000113585.2	ENSMUST00000221684.2	613	2	83	0	83	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACTAATCTGGGAGT	NA	False	NA	NA	False	AATGAA	-37	NA	110445145	110443257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110443436_110444793
ES_00012757	chr12	-	2219	1	FSM	ENSMUSG00000113662.2	ENSMUST00000222675.2	2219	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGCACCATCCTAGAGGC	NA	False	NA	NA	False	AATATA	-41	NA	110568397	110566178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110566200_110568400
ES_00012759	chr12	-	3281	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	1849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATTGGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	110662829	110657038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ES_00012760	chr12	-	2852	11	FSM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	4154.7402337571	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662723	110657461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662215_110662685
ES_00012762	chr12	-	711	4	FSM	ENSMUSG00000021270.14	ENSMUST00000155242.8	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	5758.44359759359	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGGAGATCGTGAAGA	NA	False	NA	-19	True	NA	NA	NA	110669162	110661062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110661139_110661485_110661853_110661952_110662115_110669056
ES_00012763	chr12	-	1472	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1833	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_10	69.773992289391	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9505	False	NA	-3	True	AATATA	-18	NA	110805528	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ES_00012764	chr12	-	1305	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1833	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	96.2418827746008	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9505	False	NA	-3	True	AATATA	-18	NA	110805528	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774834_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
ES_00012765	chr12	-	1568	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1820	0	intron_retention	FALSE	canonical	3	79	junction_9	71.1239571730273	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9492	False	NA	-3	True	AATATA	-18	NA	110805541	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ES_00012766	chr12	-	1184	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	98.0137433095534	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7713	False	NA	-3	True	AATATA	-18	NA	110807320	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774834_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ES_00012767	chr12	-	1184	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	94.4872305377498	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7706	False	NA	-3	True	AATATA	-18	NA	110807327	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774552_110774638_110774834_110776342_110776458_110778212_110778315_110779948_110780125_110781401_110781451_110781564_110781644_110807179
ES_00012768	chr12	-	1651	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	77.2745454331556	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7696	False	NA	-3	True	AATATA	-18	NA	110807337	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774834_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ES_00012769	chr12	-	1354	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	56	junction_7	83.5867812515831	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTCATTTTCTTAATG	7672	False	NA	5	True	AATATA	-26	NA	110807361	110774223	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
ES_00012770	chr12	-	1210	8	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_7	79.9971938283348	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7693	False	NA	-3	True	AATATA	-18	NA	110807340	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ES_00012771	chr12	-	1403	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_8	74.9615526453395	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7674	False	NA	-3	True	AATATA	-18	NA	110807359	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ES_00012772	chr12	-	1701	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	0	-8	0	8	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTCATTTTCTTAATG	7660	False	NA	5	True	AATATA	-26	NA	110807373	110774223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ES_00012773	chr12	-	2829	6	FSM	ENSMUSG00000056458.17	ENSMUST00000021701.9	2829	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	92.6895894909455	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7660	False	NA	-3	True	AATATA	-18	NA	110807373	110774231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ES_00012774	chr12	-	1613	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1850	-9	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	74.8721223870661	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTTATGCAAGGGTTT	9522	False	NA	-12	True	AATATA	-9	NA	110805511	110774240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774552_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780125_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ES_00012777	chr12	-	2033	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	0	-4	0	4	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTCTCAGCCTCTGT	3349	False	NA	NA	False	TATAAA	-33	NA	110855579	110839039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ES_00012778	chr12	-	501	3	FSM	ENSMUSG00000021276.11	ENSMUST00000221414.2	501	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	30	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGGAGGTTAATCTGC	1422	False	NA	-13	True	AATAAA	-14	NA	110843778	110841461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110841711_110843274_110843405_110843656
ES_00012779	chr12	-	729	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	0	-6	0	0	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGGAGGTTAATCTGC	3378	False	NA	-13	True	AATAAA	-14	NA	110855550	110841461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ES_00012780	chr12	-	716	4	FSM	ENSMUSG00000021276.11	ENSMUST00000223407.2	702	4	0	-14	0	14	multi-exon	FALSE	canonical	3	34	junction_1	192.582449875372	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	3370	False	NA	12	True	AATACA	-29	NA	110855558	110845115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110845474_110846118_110846249_110850323_110850493_110855499
ES_00012782	chr12	-	2577	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	17	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCGTCTTGACTGGAG	NA	False	NA	NA	False	AAAAAG	-22	NA	110945474	110941786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110943983_110944381_110944562_110945273
ES_00012784	chr12	-	1707	3	FSM	ENSMUSG00000037904.15	ENSMUST00000043459.13	1706	3	0	-1	0	0	multi-exon	FALSE	canonical	3	51	junction_1	30.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGATCTGCCTGGTCTG	NA	False	NA	-6	True	NA	NA	NA	110945455	110942859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110944205_110944381_110944562_110945273
ES_00012788	chr12	-	1472	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638772	111635794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ES_00012790	chr12	-	3218	2	FSM	ENSMUSG00000049792.7	ENSMUST00000160576.2	1852	2	-862	-504	-532	88	multi-exon	FALSE	canonical	0	0	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGAGGAAGGGATGAA	NA	False	NA	NA	False	NA	NA	NA	111680223	111675833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111677847_111679018
ES_00012791	chr12	-	2139	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679691	111675921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111677847_111679477
ES_00012793	chr12	-	509	1	Intergenic	novelGene_993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTCGATTCTTTAAAGT	NA	False	NA	NA	False	AATAAA	-2	NA	111687160	111686651	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_111686700_111687200
ES_00012795	chr12	-	369	4	FSM	ENSMUSG00000021287.13	ENSMUST00000129258.2	369	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	36.2338086445365	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCTGGATCAGTTCC	NA	False	NA	NA	False	NA	NA	NA	111780286	111776334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111776379_111777291_111777430_111778494_111778654_111780258
ES_00012797	chr12	-	780	4	FSM	ENSMUSG00000021285.16	ENSMUST00000163747.4	770	4	0	-10	0	10	multi-exon	FALSE	canonical	3	3	junction_1	22.573337271116	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAATACTAGTTAATTT	1183	False	NA	NA	False	AATAAA	-21	NA	111874474	111832438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111832772_111832848_111832969_111838719_111838868_111874295
ES_00012798	chr12	-	1354	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221669.2	1366	3	12	0	12	0	multi-exon	FALSE	canonical	2	6	junction_2	0.5	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAACCATCCCGAGC	NA	False	NA	NA	False	AATAAA	-10	NA	111910897	111908780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111909646_111910318_111910501_111910590
ES_00012799	chr12	-	371	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	-5	0	5	multi-exon	TRUE	canonical	3	2424	junction_1	129.659382828839	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCCCCTGAGTAAGTCC	NA	False	NA	-2	True	AATAAA	-23	NA	111933411	111927803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
ES_00012800	chr12	-	437	2	FSM	ENSMUSG00000021290.7	ENSMUST00000222405.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	2696	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGGTCCATAACGTGGC	NA	False	NA	NA	False	NA	NA	NA	111933401	111929394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111929788_111933357
ES_00012802	chr12	-	2691	14	FSM	ENSMUSG00000001729.15	ENSMUST00000001780.10	2690	14	0	-1	0	1	multi-exon	TRUE	canonical	3	224	junction_13	42.5045768506691	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGCTTTCTGGTGTGGA	NA	False	NA	1	True	AATAAA	-20	NA	112640710	112620253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112640433
ES_00012806	chr12	-	2624	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	-199	0	-165	0	multi-exon	FALSE	canonical	3	30	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGGAGCCTTTTTTT	9447	False	NA	0	True	ATTAAA	-19	NA	112793208	112783848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_112785733_112792468
ES_00012809	chr12	-	4785	25	NIC	ENSMUSG00000002799.7	novel	5106	26	NA	NA	200	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	8.70344759276461	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAACGTTTTGGCCTCC	NA	False	NA	-24	True	ATTAAA	-29	NA	112893196	112871445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_112873006_112873172_112873330_112874063_112874196_112874678_112874928_112875322_112875439_112875528_112875643_112876148_112876235_112876312_112876341_112876784_112876902_112877009_112877124_112877235_112877350_112877555_112877670_112877745_112877899_112877976_112878128_112878817_112878992_112879090_112879138_112879499_112879614_112879953_112880068_112880223_112880344_112880428_112880560_112883691_112883753_112883850_112884103_112885619_112885678_112892501_112892853_112893038
ES_00012811	chr12	-	734	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	8854	False	NA	-32	True	GGGGCT	-44	NA	112905737	112898374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
ES_00012812	chr12	-	2307	18	NNC	ENSMUSG00000011158.9	novel	2615	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	100	junction_17	19.4818698433994	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTGTGTTTATGTGT	NA	False	NA	-3	True	NA	NA	NA	112964016	112923704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946678_112951537_112951713_112956683_112956765_112963792
ES_00012813	chr12	-	2330	18	NNC	ENSMUSG00000011158.9	novel	2615	18	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	46.5819217350031	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTGTGTTTATGTGT	NA	False	NA	-3	True	NA	NA	NA	112964042	112923704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927863_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946677_112951536_112951713_112956683_112956765_112963792
ES_00012814	chr12	-	2615	18	FSM	ENSMUSG00000011158.9	ENSMUST00000011302.9	2615	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	37.0119217677383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTGTGTTTATGTGT	NA	False	NA	-3	True	NA	NA	NA	112964324	112923704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946677_112951536_112951713_112956683_112956765_112963792
ES_00012820	chr12	-	3706	22	FSM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	15	0	15	0	multi-exon	FALSE	canonical	3	13	junction_13	5.74791690552625	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATAATAGGGGCTTACTA	NA	False	NA	NA	False	AGTAAA	-17	NA	116226627	116170670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
ES_00012821	chr12	-	1388	3	FSM	ENSMUSG00000042050.9	ENSMUST00000221029.2	1404	3	8	8	-4	-8	multi-exon	FALSE	canonical	3	23	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTCTACCAAAGTATTA	NA	False	NA	NA	False	AATAAA	-24	NA	116226598	116218665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_116219872_116221040_116221095_116226470
ES_00012824	chr12	-	9075	6	FSM	ENSMUSG00000113831.2_ENSMUSG00000025323.11	ENSMUST00000222314.2	2677	6	-125	-6273	-53	-86	multi-exon	FALSE	canonical	2	11	junction_4	4.07921561087423	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCTTGAAAGCATTAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	118265228	118195415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_118202130_118218144_118218345_118225461_118225691_118262372_118263928_118264433_118264544_118264961
ES_00012825	chr12	+	201	1	Intergenic	novelGene_817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	431	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTGTTTTTTTAAGCC	4070	False	NA	NA	False	NA	NA	NA	3877240	3877441	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_3877200_3877400
ES_00012826	chr12	+	225	1	Intergenic	novelGene_818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCTTAAGACACACGGTC	NA	False	NA	NA	False	NA	NA	NA	4011121	4011346	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_4011100_4011300
ES_00012827	chr12	+	271	1	Intergenic	novelGene_819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGCAGCACCTGACCT	NA	False	NA	NA	False	NA	NA	NA	4351053	4351324	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_4351100_4351300
ES_00012828	chr12	+	256	1	Intergenic	novelGene_820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGGACCATCGTCATCC	2413	False	NA	NA	False	NA	NA	NA	4509652	4509908	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_4509700_4509900
ES_00012830	chr12	+	359	1	Intergenic	novelGene_825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCAGCCCCCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	4897949	4898308	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_4897900_4898300
ES_00012831	chr12	+	316	1	Intergenic	novelGene_826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGATTTTTCTTTTGATA	NA	False	NA	NA	False	NA	NA	NA	8688972	8689288	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_8689000_8689300
ES_00012832	chr12	+	201	1	Intergenic	novelGene_827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTATGAAGTTCTTATGAA	1547	False	NA	NA	False	NA	NA	NA	8701914	8702115	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_8701900_8702100
ES_00012833	chr12	+	202	1	Intergenic	novelGene_831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATTCAGCTATTTTT	NA	False	NA	NA	False	NA	NA	NA	11865789	11865991	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_11865800_11866000
ES_00012834	chr12	+	246	1	Intergenic	novelGene_843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAATCACAGCATTCGTG	NA	False	NA	NA	False	AAAAAG	-26	NA	20169959	20170205	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_20170000_20170200
ES_00012836	chr12	+	361	1	Intergenic	novelGene_855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGGGCCCCTGCTGGAAA	NA	False	NA	NA	False	NA	NA	NA	23208565	23208926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23208600_23208900
ES_00012837	chr12	+	1348	1	Intergenic	novelGene_857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAAGTATTTAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	23209528	23210876	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23209500_23210900
ES_00012839	chr12	+	332	1	Intergenic	novelGene_871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGTACTATTGTCATAA	NA	False	NA	NA	False	NA	NA	NA	27470295	27470627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_27470300_27470600
ES_00012842	chr12	+	204	1	Intergenic	novelGene_876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTACATGGAGCAAGTA	NA	False	NA	NA	False	NA	NA	NA	31801735	31801939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_31801700_31801900
ES_00012843	chr12	+	230	1	Intergenic	novelGene_877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGAAAGCGTGGAAGGGC	NA	False	NA	NA	False	AAAAAG	-26	NA	31850671	31850901	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_31850700_31850900
ES_00012844	chr12	+	1666	1	Intergenic	novelGene_878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCCAGGGGCCATGTGT	NA	False	NA	NA	False	NA	NA	NA	36426056	36427722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_36426100_36427700
ES_00012845	chr12	+	259	1	Intergenic	novelGene_880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTCACTTGGATGATACAC	NA	False	NA	NA	False	NA	NA	NA	36428095	36428354	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_36428100_36428400
ES_00012846	chr12	+	221	1	Intergenic	novelGene_883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTCTTTTATGTATGTA	540	False	NA	NA	False	NA	NA	NA	40652540	40652761	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_40652500_40652800
ES_00012847	chr12	+	279	1	Intergenic	novelGene_885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCTTGGGACTCTATAA	NA	False	NA	NA	False	NA	NA	NA	44664677	44664956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_44664700_44665000
ES_00012850	chr12	+	401	1	Intergenic	novelGene_889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4980	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGCTCACACACGCAGCA	NA	False	NA	NA	False	AAGAAA	-42	NA	45779437	45779838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_45779400_45779800
ES_00012851	chr12	+	257	1	Intergenic	novelGene_890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAACATATATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	45930211	45930468	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_45930200_45930500
ES_00012853	chr12	+	239	1	Intergenic	novelGene_893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTAAAGCCTTGGGTAG	NA	False	NA	NA	False	AAAACA	-31	NA	52020383	52020622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_52020400_52020600
ES_00012856	chr12	+	249	1	Intergenic	novelGene_900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTCAGAGTTACCCCA	NA	False	NA	NA	False	AATAAA	-22	NA	62245699	62245948	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_62245700_62245900
ES_00012858	chr12	+	5507	1	Intergenic	novelGene_903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGTTGCGAGCTGCTGGC	NA	False	NA	NA	False	NA	NA	NA	68604848	68610355	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_68604800_68610400
ES_00012859	chr12	+	234	1	Intergenic	novelGene_906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCTGCTCTTAAACAGAAA	7994	False	NA	NA	False	NA	NA	NA	69732989	69733223	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_69733000_69733200
ES_00012860	chr12	+	237	1	Intergenic	novelGene_907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTTATTATTTTTTG	1140	False	NA	NA	False	NA	NA	NA	69844822	69845059	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_69844800_69845100
ES_00012861	chr12	+	219	1	Intergenic	novelGene_908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGATCAGAGGATAAACTA	NA	False	NA	NA	False	AATAAA	-11	NA	69978026	69978245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_69978000_69978200
ES_00012862	chr12	+	208	1	Intergenic	novelGene_915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCAAGGTTTTACTAAGG	NA	False	NA	NA	False	NA	NA	NA	71092510	71092718	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_71092500_71092700
ES_00012863	chr12	+	201	1	Intergenic	novelGene_916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGCTTCTAATAT	NA	False	NA	NA	False	NA	NA	NA	71491540	71491741	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_71491500_71491700
ES_00012864	chr12	+	202	1	Intergenic	novelGene_917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACAGATATTTAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	72730705	72730907	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_72730700_72730900
ES_00012866	chr12	+	220	1	Intergenic	novelGene_923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCTGAGCAAGCCATGG	NA	False	NA	NA	False	NA	NA	NA	76283109	76283329	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_76283100_76283300
ES_00012867	chr12	+	1053	1	Intergenic	novelGene_924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATCTAAGCGTTTGCTG	953	False	NA	NA	False	NA	NA	NA	76498930	76499983	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_76498900_76500000
ES_00012869	chr12	+	221	1	Intergenic	novelGene_930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCTATGCTTGATTCAG	3235	False	NA	NA	False	NA	NA	NA	79765615	79765836	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_79765600_79765800
ES_00012870	chr12	+	213	1	Intergenic	novelGene_932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTCACTTTTCTAATTC	NA	False	NA	NA	False	NA	NA	NA	80607954	80608167	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_80608000_80608200
ES_00012871	chr12	+	214	1	Intergenic	novelGene_934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTCTAGGGTTAGATT	7436	False	NA	NA	False	NA	NA	NA	80700116	80700330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_80700100_80700300
ES_00012873	chr12	+	241	1	Intergenic	novelGene_937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGTTTTTATAGCAGG	6324	False	NA	NA	False	NA	NA	NA	81669692	81669933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_81669700_81669900
ES_00012874	chr12	+	201	1	Intergenic	novelGene_939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTCTTTCTTCTGATCAG	446	False	NA	NA	False	NA	NA	NA	82203393	82203594	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_82203400_82203600
ES_00012875	chr12	+	236	1	Intergenic	novelGene_941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAAAGCTTTTATTCTTC	NA	False	NA	NA	False	NA	NA	NA	82538427	82538663	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_82538400_82538700
ES_00012878	chr12	+	211	1	Intergenic	novelGene_946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAAATTCTTACTGAGC	NA	False	NA	NA	False	NA	NA	NA	83812396	83812607	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_83812400_83812600
ES_00012879	chr12	+	209	1	Intergenic	novelGene_949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAACTGCCGGGCGGTG	2530	False	NA	NA	False	NA	NA	NA	84319654	84319863	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_84319700_84319900
ES_00012880	chr12	+	210	1	Intergenic	novelGene_950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTTTCTTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	84359021	84359231	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_84359000_84359200
ES_00012881	chr12	+	222	1	Intergenic	novelGene_952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTGTATCTTATTCCT	NA	False	NA	NA	False	NA	NA	NA	84451181	84451403	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_84451200_84451400
ES_00012885	chr12	+	201	1	Intergenic	novelGene_955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCCTTTGTGATAGGA	NA	False	NA	NA	False	NA	NA	NA	85055675	85055876	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_85055700_85055900
ES_00012886	chr12	+	230	1	Intergenic	novelGene_956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATGCAGGATAC	NA	False	NA	NA	False	NA	NA	NA	85545353	85545583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_85545400_85545600
ES_00012887	chr12	+	230	1	Intergenic	novelGene_958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCCCGCCTTGGCAGA	1963	False	NA	NA	False	NA	NA	NA	85717220	85717450	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_85717200_85717400
ES_00012888	chr12	+	217	1	Intergenic	novelGene_961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAATTTTGTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	86887943	86888160	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_86887900_86888200
ES_00012890	chr12	+	213	1	Intergenic	novelGene_963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGACAGTTTTATATCT	NA	False	NA	NA	False	NA	NA	NA	87536679	87536892	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_87536700_87536900
ES_00012891	chr12	+	212	1	Intergenic	novelGene_966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	91545399	91545611	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_91545400_91545600
ES_00012892	chr12	+	384	1	Intergenic	novelGene_967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGAGCTGTAAGAGAGG	NA	False	NA	NA	False	NA	NA	NA	93075279	93075663	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_93075300_93075700
ES_00012893	chr12	+	300	1	Intergenic	novelGene_969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGAGTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	98587021	98587321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_98587000_98587300
ES_00012895	chr12	+	201	1	Intergenic	novelGene_970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99400919	99401120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_99400900_99401100
ES_00012896	chr12	+	616	1	Intergenic	novelGene_971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2113	False	NA	NA	False	NA	NA	NA	99611318	99611934	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_99611300_99611900
ES_00012898	chr12	+	210	1	Intergenic	novelGene_974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTACTCTTATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	101829714	101829924	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_101829700_101829900
ES_00012899	chr12	+	215	1	Intergenic	novelGene_982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAACAGTGGCTTGAAAG	NA	False	NA	NA	False	AAAAAG	-1	NA	105731371	105731586	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_105731400_105731600
ES_00012901	chr12	+	214	1	Intergenic	novelGene_986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGTATGAACTGCATAAG	1284	False	NA	NA	False	NA	NA	NA	108196987	108197201	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_108197000_108197200
ES_00012904	chr12	+	251	1	Intergenic	novelGene_992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTTTCTTTCTATAAT	NA	False	NA	NA	False	NA	NA	NA	111531075	111531326	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_111531100_111531300
ES_00012911	chr12	+	201	1	Intergenic	novelGene_994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACAAACCAACCAACCAG	NA	False	NA	NA	False	NA	NA	NA	113043463	113043664	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_113043500_113043700
ES_00012917	chr12	+	5657	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	0	1713	intron_retention	FALSE	canonical	3	44	junction_1	68.3569065030496	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGACTGTTTCATTCAA	NA	False	NA	NA	False	ATTAAA	-20	NA	3285503	3293123	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028
ES_00012918	chr12	+	2894	7	FSM	ENSMUSG00000079179.10	ENSMUST00000177896.8	2872	7	-22	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	77.8117386174263	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAGCCTGTTAGGCCAT	NA	False	NA	NA	False	AATAAA	-21	NA	3285503	3300377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299866
ES_00012920	chr12	+	4153	9	FSM	ENSMUSG00000020668.11	ENSMUST00000220210.2	4144	9	-9	0	-9	0	multi-exon	FALSE	canonical	3	5	junction_1	19.8679232684244	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATTGACCTTTATT	NA	False	NA	4	True	AGTAAA	-19	NA	3415122	3454064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3415497_3415771_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ES_00012921	chr12	+	8724	12	NIC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	254	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_2	16.9910039396156	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTAGTTTTTGATGAAT	NA	False	NA	NA	False	NA	NA	NA	3477165	3556852	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_3477213_3492473_3492557_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
ES_00012922	chr12	+	252	2	NNC	ENSMUSG00000037486.19	novel	11934	11	NA	NA	3856	37666	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACGAGGTATTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	3547616	3594518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_3547678_3594327
ES_00012923	chr12	+	208	1	Intergenic	novelGene_814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	243	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACACAAAACAGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	3619690	3619898	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_3619700_3619900
ES_00012925	chr12	+	2775	20	FSM	ENSMUSG00000071454.14	ENSMUST00000173199.8	2820	20	1	44	1	-44	multi-exon	FALSE	canonical	0	0	junction_4	121.930910004004	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCTGGGTGCTACTCA	NA	False	NA	NA	False	NA	NA	NA	3622381	3831752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3829618_3829655_3831105
ES_00012926	chr12	+	2332	19	NIC	ENSMUSG00000071454.14	novel	2390	20	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	113.901516915077	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGTGTTCCTTCCG	NA	False	NA	27	True	AAAAAG	-7	NA	3622400	3831398	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
ES_00012928	chr12	+	1629	9	FSM	ENSMUSG00000071454.14	ENSMUST00000173524.8	1629	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	156.038807272422	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGATTCCTGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	3622465	3713242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3712672
ES_00012930	chr12	+	816	6	FSM	ENSMUSG00000020661.16	ENSMUST00000172719.8	827	6	11	0	11	0	multi-exon	FALSE	canonical	2	4	junction_1	22.3749860335152	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGCAAACGGAAACGGGAT	134	False	NA	NA	False	NA	NA	NA	3856537	3923381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_3856603_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281
ES_00012931	chr12	+	4972	22	FSM	ENSMUSG00000020654.16	ENSMUST00000124505.8	4962	22	-10	0	-9	0	multi-exon	FALSE	canonical	3	17	junction_1	15.5787808476277	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACTGTTGTGGCAATTC	NA	False	NA	8	True	ATTAAA	-18	NA	4183093	4263525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4183720_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ES_00012932	chr12	+	4726	22	NIC	ENSMUSG00000020654.16	novel	4728	22	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	15.5787808476277	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACTGTTGTGGCAATTC	NA	False	NA	8	True	ATTAAA	-18	NA	4183404	4263525	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_4183779_4184146_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ES_00012933	chr12	+	1606	3	FSM	ENSMUSG00000020640.11	ENSMUST00000218084.2	1606	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCAAAGCTTGACTCT	NA	False	NA	NA	False	AATAAA	-22	NA	4761517	4763952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4762037_4762466_4762641_4763039
ES_00012936	chr12	+	2620	8	FSM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	16	378	16	-378	multi-exon	FALSE	canonical	0	0	junction_7	6.68534797531291	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCATAAAATGTTAGTAAG	NA	False	NA	NA	False	NA	NA	NA	8997944	9021650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9011117_9011244_9013472_9013599_9017628_9017740_9020519
ES_00012937	chr12	+	527	1	FSM	ENSMUSG00000060647.3	ENSMUST00000080066.3	554	1	-23	50	-23	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTTCGGGACAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	9479523	9480050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_9479500_9480000
ES_00012938	chr12	+	204	2	Antisense	novelGene_ENSMUSG00000043673.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGCCCTTGATCAGGTT	NA	False	NA	NA	False	NA	NA	NA	11152096	11174395	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_11152118_11174212
ES_00012939	chr12	+	227	1	Intergenic	novelGene_829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGATGTGGGATGAACTG	NA	False	NA	NA	False	NA	NA	NA	11197946	11198173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_11197900_11198200
ES_00012940	chr12	+	5272	26	FSM	ENSMUSG00000020608.8	ENSMUST00000218022.2	5272	26	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_3	127.798754297528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAATTAAGGTCATGCTT	4536	False	NA	NA	False	AATAAA	-17	NA	11316105	11369780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
ES_00012942	chr12	+	2976	4	FSM	ENSMUSG00000057469.9	ENSMUST00000220707.2	3018	4	0	42	0	-42	multi-exon	FALSE	canonical	3	127	junction_1	65.5303152916436	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCTGAGATCAGCCTTG	7402	False	NA	NA	False	NA	NA	NA	16860969	16872586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229
ES_00012944	chr12	+	384	1	FSM	ENSMUSG00000064620.3	ENSMUST00000082686.3	122	1	11	-273	11	273	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAATCCTCAGGTTCGT	NA	False	NA	NA	False	ATTAAA	-23	NA	16990005	16990389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_16990000_16990400
ES_00012945	chr12	+	1477	11	NNC	ENSMUSG00000011179.9	novel	2208	12	NA	NA	14	-58	at_least_one_novel_splicesite	FALSE	canonical	3	102	junction_2	406.660312791893	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTCAATGGGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	17594986	17600020	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_17595170_17597096_17597195_17597286_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863
ES_00012946	chr12	+	1668	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-58	-2	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCTGTGAGTTTCCTGT	8566	False	NA	15	True	AATAAA	-3	NA	17740798	17841932	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
ES_00012948	chr12	+	1145	4	Fusion	ENSMUSG00000113536.2_ENSMUSG00000113294.2	novel	540	3	NA	NA	-272	-4952	multi-exon	FALSE	canonical	3	7	junction_3	63.9374694525831	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCCCCAGCTGAGTT	NA	False	NA	NA	False	AATAAA	-30	NA	17931925	17983932	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_17932324_17950660_17950788_17950987_17951049_17983373
ES_00012950	chr12	+	843	2	Fusion	ENSMUSG00000113642.2_ENSMUSG00000113234.2	novel	1295	3	NA	NA	-253	-33	multi-exon	FALSE	canonical	3	14	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGCAGTGAGTAACAATA	NA	False	NA	-15	True	ATTAAA	-12	NA	18042880	18112432	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_18043260_18111968
ES_00012951	chr12	+	348	1	FSM	ENSMUSG00000113234.2	ENSMUST00000223267.2	126	1	-233	11	-233	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCGAGGAGGTGAGCGGT	NA	False	NA	NA	False	NA	NA	NA	18042900	18043248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_18042900_18043200
ES_00012952	chr12	+	2676	4	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-260	18673	multi-exon	FALSE	canonical	3	19	junction_2	10.0332779621949	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATACTGGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	18437495	18456752	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_18437954_18452998_18453126_18453327_18453389_18454722
ES_00012953	chr12	+	1303	2	Intergenic	novelGene_836	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTCAGGATAGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	18455217	18456688	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_18455829_18455996
ES_00012954	chr12	+	967	3	Intergenic	novelGene_837	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTCAGGATAGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	18455217	18456688	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_18455376_18455543_18455661_18455996
ES_00012955	chr12	+	451	1	FSM	ENSMUSG00000113724.2	ENSMUST00000220919.2	217	1	-291	57	-291	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	1065	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGGGTCGCGGGGATCGC	NA	False	NA	NA	False	NA	NA	NA	18660093	18660544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_18660100_18660500
ES_00012957	chr12	+	3488	1	FSM	ENSMUSG00000116815.2	ENSMUST00000232086.2	1785	1	0	-1703	0	1703	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTATTTGGTTGTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	18698214	18701702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_18698200_18701700
ES_00012958	chr12	+	1519	4	NNC	ENSMUSG00000113646.2	novel	547	3	NA	NA	-21418	757	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.2659863237109	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTGTCACAAGCACC	NA	False	NA	NA	False	AATAAA	-18	NA	18802076	18827133	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_18802292_18823494_18823836_18825259_18825366_18826276
ES_00012959	chr12	+	472	1	FSM	ENSMUSG00000112970.2	ENSMUST00000220531.2	135	1	-345	8	-345	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGGTAGCGTAGCCCG	NA	False	NA	NA	False	NA	NA	NA	18903526	18903998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_18903500_18904000
ES_00012962	chr12	+	2198	1	FSM	ENSMUSG00000093908.3	ENSMUST00000179344.2	2478	1	-41	321	-41	-321	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAACCCAAAGCTGCTT	NA	False	NA	NA	False	ATTAAA	-40	NA	19437768	19439966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_19437800_19440000
ES_00012964	chr12	+	975	1	FSM	ENSMUSG00000059229.8	ENSMUST00000186566.2	126	1	-495	-354	-271	354	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCAGGGTTTCAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	19540037	19541012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_19540000_19541000
ES_00012965	chr12	+	1039	3	NNC	ENSMUSG00000114140.2	novel	580	3	NA	NA	-24	-9042	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	5.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCAGGACCTGCAGAAT	NA	False	NA	NA	False	NA	NA	NA	19575969	19604053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_19576845_19577748_19577855_19603995
ES_00012967	chr12	+	1137	2	ISM	ENSMUSG00000114041.3	ENSMUST00000221661.3	567	4	1603	-740	1603	740	3prime_fragment	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	False	NA	NA	False	AATAAA	-1	NA	20326642	20328769	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_20326942_20327931
ES_00012968	chr12	+	2673	4	Fusion	ENSMUSG00000116558.2_ENSMUSG00000116715.2	novel	883	3	NA	NA	-302	597	multi-exon	FALSE	canonical	2	4	junction_2	22.69116323349	508	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTCTCCATTATTTTTA	NA	False	NA	8	True	NA	NA	NA	20362213	20373393	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_20362642_20369605_20369733_20369934_20369996_20371336
ES_00012969	chr12	+	397	1	FSM	ENSMUSG00000116558.2	ENSMUST00000231862.2	126	1	-292	21	-292	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTGGCGGCCGTCGAGGA	NA	False	NA	NA	False	NA	NA	NA	20362223	20362620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_20362200_20362600
ES_00012970	chr12	+	721	1	FSM	ENSMUSG00000113749.2	ENSMUST00000220565.2	721	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGAGCCAGGACTATGG	NA	False	NA	NA	False	NA	NA	NA	20467722	20468443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_20467700_20468400
ES_00012972	chr12	+	2994	1	NIC	ENSMUSG00000116883.2	novel	1546	5	NA	NA	19612	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	4	True	NA	NA	NA	20684955	20687949	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_20685000_20687900
ES_00012973	chr12	+	218	3	Intergenic	novelGene_844	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1041	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCGGAAACACAGGAAGTT	NA	False	NA	NA	False	NA	NA	NA	20818667	20848393	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_20818761_20818957_20819019_20848329
ES_00012975	chr12	+	405	2	FSM	ENSMUSG00000090370.5	ENSMUST00000232105.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAGTCTCTACAAAGAT	NA	False	NA	NA	False	NA	NA	NA	21040538	21063057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21040874_21062987
ES_00012976	chr12	+	643	3	FSM	ENSMUSG00000092229.4	ENSMUST00000174304.4	619	3	-24	0	-24	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCATCTTCAGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	21092935	21098328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21093335_21094725_21094832_21098190
ES_00012977	chr12	+	2273	18	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	202.952105417573	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGTGCCTGTTTACTTTT	NA	False	NA	14	True	AATAAA	-18	NA	21336361	21364837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352504_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
ES_00012982	chr12	+	1389	1	Intergenic	novelGene_859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTACATTCATAGGATTT	NA	False	NA	NA	False	NA	NA	NA	23443955	23445344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23444000_23445300
ES_00012983	chr12	+	331	2	Intergenic	novelGene_860	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGATGACATTCATAGG	NA	False	NA	NA	False	NA	NA	NA	23445706	23446288	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23445881_23446131
ES_00012984	chr12	+	471	2	Intergenic	novelGene_866	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTTTTATGACATTGA	NA	False	NA	NA	False	NA	NA	NA	23979025	23979664	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23979305_23979472
ES_00012989	chr12	+	2581	11	NIC	ENSMUSG00000020646.18	novel	2351	13	NA	NA	-60	-32	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	41.3908202383089	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTAACTTCATGCATTAA	NA	False	NA	NA	False	ATTAAA	-14	NA	24881547	25010253	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_24881774_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ES_00012990	chr12	+	7068	29	NIC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	-1	-219	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	8.28017055922134	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACGGAGTTTTATTCACT	NA	False	NA	10	True	AATAAA	-20	NA	25024922	25109477	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580
ES_00012996	chr12	+	224	1	FSM	ENSMUSG00000112916.2	ENSMUST00000219361.2	595	1	439	-68	439	68	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCCTCTGCCACACCT	NA	False	NA	NA	False	NA	NA	NA	32980561	32980785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_32980600_32980800
ES_00012997	chr12	+	1474	2	FSM	ENSMUSG00000035799.7	ENSMUST00000049089.7	1628	2	151	3	151	-3	multi-exon	FALSE	canonical	3	12	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTAAAGTTTGGTC	NA	False	NA	NA	False	AATAAA	-22	NA	34007820	34009825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_34008638_34009168
ES_00012998	chr12	+	2347	20	NIC	ENSMUSG00000020590.17	novel	3681	23	NA	NA	5	1624	combination_of_known_junctions	FALSE	canonical	3	17	junction_17	20.723479531153	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTTAAAATGATTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	35097220	35174611	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169731_35169905_35172916_35173025_35174428
ES_00012999	chr12	+	3078	5	FSM	ENSMUSG00000043153.7	ENSMUST00000220519.2	3122	5	44	0	15	0	multi-exon	FALSE	canonical	3	12	junction_1	4.38035386698381	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAAAACTTGGAGTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	36431596	36528817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698
ES_00013000	chr12	+	202	2	ISM	ENSMUSG00000004151.18	ENSMUST00000161591.2	670	6	16760	8645	16760	-8645	internal_fragment	FALSE	canonical	3	12	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACGAGGCATGGAATTTAA	NA	False	NA	NA	False	NA	NA	NA	38904156	38907070	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_38904228_38906939
ES_00013002	chr12	+	4009	13	ISM	ENSMUSG00000035954.11	ENSMUST00000220912.2	7360	52	369854	-691	21956	-3	3prime_fragment	FALSE	canonical	2	4	junction_11	3.44802681092953	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTTTCTGCCTTTATTC	NA	False	NA	14	True	AATAAA	-17	NA	40866188	40896870	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_40866331_40867587_40867755_40870590_40870678_40878778_40878956_40879610_40879695_40882212_40882333_40882641_40882764_40883113_40883235_40884374_40884457_40884619_40884730_40886628_40886702_40891235_40891298_40894208
ES_00013005	chr12	+	2871	1	FSM	ENSMUSG00000020950.11	ENSMUST00000179669.3	3973	1	1097	5	973	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATATATATCTTGATAT	NA	False	NA	NA	False	AATAAA	-12	NA	49430762	49433633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_49430800_49433600
ES_00013007	chr12	+	2218	1	FSM	ENSMUSG00000020952.11	ENSMUST00000219264.2	3108	1	136	754	54	-754	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGAAGGAGCTGAGAGCT	NA	False	NA	NA	False	NA	NA	NA	51424428	51426646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_51424400_51426600
ES_00013008	chr12	+	588	3	FSM	ENSMUSG00000035142.19	ENSMUST00000159485.2	896	3	-23	331	1	-331	multi-exon	FALSE	canonical	3	233	junction_1	12.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGATAGTAGTATTCTG	NA	False	NA	NA	False	AATAAA	-22	NA	52144520	52147535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_52144675_52145135_52145284_52147249
ES_00013009	chr12	+	609	1	FSM	ENSMUSG00000112145.2	ENSMUST00000219812.2	628	1	4	15	4	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGTTGAAAAGAAAAAATAAT	NA	False	NA	NA	False	AAAAAG	-25	NA	54669379	54669988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_54669400_54670000
ES_00013010	chr12	+	305	2	Antisense	novelGene_ENSMUSG00000035021.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTATTTTCTAGGGA	NA	False	NA	NA	False	NA	NA	NA	54984669	54989912	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_54984826_54989763
ES_00013011	chr12	+	487	5	FSM	ENSMUSG00000073079.7	ENSMUST00000221655.2	472	5	-15	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	357.036762813019	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAGTGGTAAAACGACAAC	2576	False	NA	NA	False	NA	NA	NA	55127046	55142674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_55127172_55135954_55136065_55136920_55137013_55138033_55138119_55142599
ES_00013012	chr12	+	222	2	Intergenic	novelGene_898	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTGCATGTAGTAGC	NA	False	NA	NA	False	CATAAA	-30	NA	55297116	55314517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_55297314_55314492
ES_00013014	chr12	+	247	1	ISM	ENSMUSG00000012076.9	ENSMUST00000219337.2	436	2	623	0	623	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCCAGTGTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	55886277	55886524	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_55886300_55886500
ES_00013015	chr12	+	4142	3	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	-28	2286	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	3.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	16	True	ATTAAA	-20	NA	57277169	57288954	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_57277398_57281366_57281475_57285148
ES_00013016	chr12	+	2704	3	FSM	ENSMUSG00000060121.16	ENSMUST00000182710.2	658	3	-1118	-928	-1118	345	multi-exon	FALSE	canonical	3	764	junction_2	15	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAACATCTAAAAACAA	79	False	NA	NA	False	NA	NA	NA	59070333	59075601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_59071900_59073640_59073700_59074522
ES_00013017	chr12	+	2924	6	FSM	ENSMUSG00000020994.6	ENSMUST00000217773.2	2924	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_4	10.733126291999	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGAAGGCGGAACAAGAA	NA	False	NA	NA	False	AAAAAG	-25	NA	59113707	59118322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901
ES_00013020	chr12	+	331	2	Genic_Genomic	ENSMUSG00000035597.20	novel	4069	14	NA	NA	-18369	584	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGGGAAAAGGTCAAGGA	3005	False	NA	NA	False	NA	NA	NA	65064737	65109514	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_65064765_65109210
ES_00013021	chr12	+	3469	15	FSM	ENSMUSG00000035597.20	ENSMUST00000220798.2	3457	15	-11	-1	-10	0	multi-exon	TRUE	canonical	3	88	junction_9	125.885678620058	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTGTTGATGAATTCAT	7497	False	NA	20	True	AATAAA	-17	NA	65083096	65108930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_65083243_65089234_65089582_65090005_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ES_00013022	chr12	+	3056	16	NIC	ENSMUSG00000035597.20	novel	4314	17	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	137.107192452556	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTGTTGATGAATTCAT	7522	False	NA	20	True	AATAAA	-17	NA	65083121	65108930	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_65083243_65089234_65089582_65090005_65090132_65090316_65090386_65090488_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ES_00013026	chr12	+	1295	1	FSM	ENSMUSG00000035597.20	ENSMUST00000223105.2	1692	1	233	164	233	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTCCTCAATGCTATTAT	NA	False	NA	NA	False	NA	NA	NA	65090998	65092293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_65091000_65092300
ES_00013027	chr12	+	956	1	FSM	ENSMUSG00000035597.20	ENSMUST00000221221.2	1810	1	0	854	0	-854	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTTGAACTCATGATTC	NA	False	NA	NA	False	NA	NA	NA	65095089	65096045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_65095100_65096000
ES_00013031	chr12	+	2484	2	FSM	ENSMUSG00000097061.3	ENSMUST00000181850.3	2545	2	0	61	0	-61	multi-exon	FALSE	canonical	0	0	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTCAGATATTTATTGCG	2113	False	NA	NA	False	NA	NA	NA	69243984	69246580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_69244390_69244501
ES_00013032	chr12	+	2562	13	FSM	ENSMUSG00000051890.14	ENSMUST00000063445.13	2620	13	43	15	-39	-15	multi-exon	FALSE	canonical	1	2	junction_6	3.37474278855276	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAAACTTAAACTTTT	NA	False	NA	NA	False	AATAAA	-1	NA	69288648	69331391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_69288788_69297526_69297598_69298144_69298263_69298701_69298821_69300465_69300545_69302948_69303033_69304796_69304881_69305342_69305402_69306274_69306388_69309922_69309996_69315015_69315101_69316599_69316653_69329906
ES_00013033	chr12	+	2717	15	FSM	ENSMUSG00000021066.10	ENSMUST00000021466.10	5150	15	50	2383	50	8	multi-exon	FALSE	canonical	1	5	junction_5	4.65766868197174	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACTGGCTCTAGAACT	9024	False	NA	15	True	ATTAAA	-29	NA	69939928	70010808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_69940119_69954578_69954767_69972715_69972964_69978311_69978447_69978990_69979096_69981643_69981695_69983848_69983906_69992986_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814_70006247_70007321_70007337_70010001
ES_00013034	chr12	+	4362	13	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	34	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	49.1898250544652	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	821	False	NA	NA	False	AATAAA	-21	NA	70872321	70949008	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_70872348_70919264_70919356_70923933_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
ES_00013036	chr12	+	5056	14	NIC	ENSMUSG00000048285.10	novel	2721	12	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	48.8126475025993	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	953	False	NA	NA	False	AATAAA	-21	NA	70872453	70949008	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_70872908_70910650_70910917_70919264_70919356_70923933_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
ES_00013038	chr12	+	3714	14	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	94.5177106850144	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGCTCTGCAGCCTT	9731	False	NA	NA	False	AATAAA	-21	NA	70984716	71011492	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71009570_71009791
ES_00013039	chr12	+	443	1	Intergenic	novelGene_913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAAGTAAGGCCACGTC	1835	False	NA	NA	False	NA	NA	NA	71050230	71050673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_71050200_71050700
ES_00013040	chr12	+	584	4	FSM	ENSMUSG00000021078.6	ENSMUST00000221962.2	584	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAATGCCCACTGCCGT	NA	False	NA	NA	False	AAAACA	-21	NA	71158243	71169901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_71158524_71164299_71164382_71168637_71168781_71169822
ES_00013042	chr12	+	2127	8	NNC	ENSMUSG00000005078.17	novel	1874	7	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	51	junction_4	260.001334376482	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132337	72148235	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_72132683_72132721_72132958_72136088_72136181_72136729_72136885_72140729_72140918_72141459_72141642_72146820_72146898_72147383
ES_00013044	chr12	+	1867	6	NIC	ENSMUSG00000005078.17	novel	1874	7	NA	NA	44	111	combination_of_known_splicesites	FALSE	canonical	2	18	junction_1	254.661657891407	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTCATATTCAATTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	72132674	72148346	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_72132958_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ES_00013049	chr12	+	1310	7	FSM	ENSMUSG00000021103.13	ENSMUST00000189644.7	1294	7	-16	0	-16	0	multi-exon	FALSE	non_canonical	0	0	junction_2	149.362813310409	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73170474	73319625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_73170701_73214773_73214927_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ES_00013052	chr12	+	3015	9	ISM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	-32	4575	13	284	intron_retention	FALSE	canonical	3	65	junction_3	12.4373429638327	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTAGTGTGTGAAATTT	NA	False	NA	9	True	AATAAA	-21	NA	74011267	74031165	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251
ES_00013053	chr12	+	5680	30	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	3554	0	3554	0	3prime_fragment	FALSE	canonical	1	4	junction_9	7.30920615725313	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-43	NA	76098905	76157674	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_76099044_76099500_76099632_76101542_76101748_76103536_76103717_76104250_76104380_76106205_76106361_76106455_76106601_76106924_76107020_76108361_76108597_76110866_76111062_76113286_76113413_76118901_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ES_00013055	chr12	+	3076	11	NNC	ENSMUSG00000021065.17	novel	3358	12	NA	NA	-29	0	at_least_one_novel_splicesite	TRUE	canonical	2	12	junction_5	34.5585011249041	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCCATTAGGAAGTTTT	NA	False	NA	-94	True	AATAAA	-36	NA	77285557	77522656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_77286028_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440510_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ES_00013056	chr12	+	1473	4	NNC	ENSMUSG00000112392.2	novel	661	2	NA	NA	299	69704	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	2.16024689946929	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATAATTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	77600419	77686187	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_77600570_77616271_77616542_77684209_77684294_77685218
ES_00013057	chr12	+	5018	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	32.7592485772635	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAATTGTAAAAGCCAC	NA	False	NA	5	True	AATAAA	-14	NA	78795680	78887349	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_78795720_78841018_78841108_78843876_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ES_00013059	chr12	+	1523	1	FSM	ENSMUSG00000091507.2	ENSMUST00000164610.2	348	1	-524	-651	-524	651	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGTAATGGAACTTCT	5449	False	NA	NA	False	AGTAAA	-45	NA	79214735	79216258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_79214700_79216300
ES_00013061	chr12	+	1507	11	FSM	ENSMUSG00000059060.16	ENSMUST00000171210.3	1858	11	38	313	-31	-1	multi-exon	FALSE	canonical	1	1	junction_1	20.7848502520466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGGGTCTCCAAAGAGTA	8682	False	NA	6	True	AATAAA	-39	NA	79344093	79861151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_79344107_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374179_79704597_79704695_79813844_79813949_79849963_79850043_79860715
ES_00013063	chr12	+	5238	2	FSM	ENSMUSG00000032705.10	ENSMUST00000219757.2	5245	2	0	7	0	-7	multi-exon	FALSE	canonical	3	232	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTTTAAAATAAGGTTAT	NA	False	NA	NA	False	ATTAAA	-37	NA	80537874	80546994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80539673_80543554
ES_00013064	chr12	+	3955	16	FSM	ENSMUSG00000021130.9	ENSMUST00000219993.2	4222	16	267	0	-258	0	multi-exon	FALSE	canonical	2	6	junction_1	5.44630353746669	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATAGGCTGATGCCTTTA	NA	False	NA	3	True	AATAAA	-18	NA	80565317	80650666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80565423_80565829_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
ES_00013066	chr12	+	393	3	FSM	ENSMUSG00000048833.10	ENSMUST00000219405.2	393	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	38.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACCACACACAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	80690999	80713401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80691191_80709243_80709353_80713308
ES_00013067	chr12	+	2638	6	ISM	ENSMUSG00000066438.7	ENSMUST00000140770.2	3535	13	26283	-2	-1883	2	3prime_fragment	FALSE	canonical	1	1	junction_3	4.53431361950185	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTGGTTTCCTTTGTTTT	NA	False	NA	6	True	CATAAA	-7	NA	80765647	80770990	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_80765781_80767357_80767537_80767986_80768120_80768222_80768368_80768719_80768870_80769092
ES_00013071	chr12	+	2720	7	FSM	ENSMUSG00000021134.18	ENSMUST00000153056.8	2720	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	608.09467921442	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
ES_00013073	chr12	+	4912	3	FSM	ENSMUSG00000042734.7	ENSMUST00000036116.6	2042	3	-263	-2607	-143	-9	multi-exon	FALSE	canonical	3	20	junction_1	7	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACTAATTTGTTCTATG	NA	False	NA	-1	True	CATAAA	-11	NA	81677879	81714322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_81678576_81707339_81707523_81710289
ES_00013075	chr12	+	6283	25	NIC	ENSMUSG00000042700.17	novel	6179	24	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	32.3541331294095	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATGTCTTTATTTTTT	NA	False	NA	21	True	NA	NA	NA	82216170	82497048	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82312730_82312800_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ES_00013082	chr12	+	5172	20	NNC	ENSMUSG00000010608.16	novel	2994	18	NA	NA	-1084	0	at_least_one_novel_splicesite	FALSE	canonical	3	88	junction_1	154.601086169779	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGTAGTGCATATA	57	True	NA	13	True	AATAAA	-13	NA	83688243	83729897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ES_00013084	chr12	+	237	1	FSM	ENSMUSG00000043487.5	ENSMUST00000222921.2	3622	1	164	3221	164	-3221	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCTTTCTGGCGCCTGAT	NA	False	NA	NA	False	GGGGCT	-38	NA	84147769	84148006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84147800_84148000
ES_00013085	chr12	+	5724	8	FSM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	-8	11	-8	-11	multi-exon	FALSE	canonical	2	7	junction_1	4.44007721940573	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAAAAAAGAAGTCCTT	9904	False	NA	NA	False	AATAAA	-13	NA	84161131	84190280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
ES_00013086	chr12	+	219	2	Antisense	novelGene_ENSMUSG00000042962.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTAATAATGTACTTGG	NA	False	NA	NA	False	NA	NA	NA	84278347	84326956	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_84278382_84326771
ES_00013087	chr12	+	216	2	Antisense	novelGene_ENSMUSG00000042962.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTCTTCTAATAATGTA	NA	False	NA	NA	False	NA	NA	NA	84278346	84326951	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_84278384_84326772
ES_00013091	chr12	+	2329	8	FSM	ENSMUSG00000042472.12	ENSMUST00000222258.2	2329	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	66.2632351046235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGTATTCAGTTCATGG	1849	False	NA	NA	False	ATTAAA	-23	NA	84363891	84380885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84363984_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708
ES_00013094	chr12	+	2121	6	NNC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	101	-2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	52.6399088145107	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGGCCCAGGTTTTCCT	NA	False	NA	3	True	AATAAA	-14	NA	84498296	84578345	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509181_84576463
ES_00013096	chr12	+	1609	2	FSM	ENSMUSG00000021241.8	ENSMUST00000222166.2	1588	2	-21	0	5	0	multi-exon	FALSE	canonical	3	86	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820029	84821862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84820146_84820369
ES_00013097	chr12	+	5416	17	FSM	ENSMUSG00000021244.16	ENSMUST00000164558.8	5416	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_14	37.0666102274001	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTCATAGGCTGTACA	NA	False	NA	9	True	AATAAA	-19	NA	85061474	85117266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85111744_85111876_85116392_85116574_85116878
ES_00013098	chr12	+	3002	9	FSM	ENSMUSG00000021244.16	ENSMUST00000169150.8	3002	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_6	12.7027310055751	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	85089000	85106110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995
ES_00013100	chr12	+	1232	3	FSM	ENSMUSG00000021244.16	ENSMUST00000166605.2	915	3	-240	-77	-240	0	multi-exon	FALSE	canonical	3	136	junction_1	10.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTCATAGGCTGTACA	44	False	NA	9	True	AATAAA	-19	NA	85111212	85117266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85111876_85116392_85116574_85116878
ES_00013101	chr12	+	291	1	FSM	ENSMUSG00000113072.2	ENSMUST00000220964.2	594	1	102	201	102	-201	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATGGAACAACGAAAGACAA	NA	False	NA	NA	False	AAGAAA	-11	NA	85403459	85403750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85403500_85403800
ES_00013102	chr12	+	764	3	FSM	ENSMUSG00000114163.2	ENSMUST00000220590.2	1057	3	0	293	0	-293	multi-exon	FALSE	canonical	1	1	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAACCACCTCACACAAC	NA	False	NA	NA	False	NA	NA	NA	85576371	85588761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85576462_85585422_85585536_85588200
ES_00013104	chr12	+	2165	5	FSM	ENSMUSG00000012609.20	ENSMUST00000124701.8	2165	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	17.6210101867061	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTTAATATGGTACATT	NA	False	NA	NA	False	NA	NA	NA	85871794	85892456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85890719
ES_00013105	chr12	+	4823	35	NIC	ENSMUSG00000012609.20	novel	5081	34	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	3	11	junction_4	10.9918182847131	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGTTTTTTTTCTAT	NA	False	NA	5	True	AATAAA	-15	NA	85871793	86100533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85890719_85890773_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964607_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86070993_86071117_86099916
ES_00013107	chr12	+	2165	6	ISM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	10	25078	10	2953	5prime_fragment	FALSE	canonical	3	56	junction_1	5.62138772902208	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTTTTTTGTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	86288658	86313066	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955
ES_00013109	chr12	+	4143	5	NNC	ENSMUSG00000034157.13	novel	1499	3	NA	NA	41	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	49.0866580650995	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTATTTGCTTTGTA	NA	False	NA	9	True	AATAAA	-21	NA	86994304	87012138	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_86994370_86994742_86994878_86999517_86999706_87007045_87007216_87008553
ES_00013110	chr12	+	272	2	Antisense	novelGene_ENSMUSG00000021036.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	87362773	87382342	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_87362900_87382196
ES_00013112	chr12	+	1993	1	FSM	ENSMUSG00000113011.2	ENSMUST00000220838.2	2602	1	734	-125	734	125	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGCCTCCAGAGCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	87828869	87830862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87828900_87830900
ES_00013113	chr12	+	1751	2	FSM	ENSMUSG00000072905.6	ENSMUST00000110147.3	1766	2	15	0	15	0	multi-exon	FALSE	canonical	2	7	junction_1	0	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACATTTTTTTCTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	87840856	87844629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87841033_87843054
ES_00013114	chr12	+	684	1	FSM	ENSMUSG00000113971.2	ENSMUST00000220585.2	435	1	-148	-101	-148	101	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCTAATGCAAACTG	NA	False	NA	NA	False	AATAAA	-20	NA	87861991	87862675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87862000_87862700
ES_00013115	chr12	+	419	1	FSM	ENSMUSG00000096049.2	ENSMUST00000180285.2	435	1	-12	28	-12	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGATGAAGACATTGATG	NA	False	NA	NA	False	NA	NA	NA	87978605	87979024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87978600_87979000
ES_00013116	chr12	+	914	1	FSM	ENSMUSG00000113419.2	ENSMUST00000222643.2	865	1	116	-165	116	165	mono-exon	FALSE	NA	NA	NA	NA	NA	1072	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATCTTTTTCTGAATG	NA	False	NA	NA	False	NA	NA	NA	88033428	88034342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_88033400_88034300
ES_00013121	chr12	+	265	1	FSM	ENSMUSG00000093419.2	ENSMUST00000177490.2	251	1	-14	0	-14	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAACATGTGGTTAAAC	NA	False	NA	NA	False	NA	NA	NA	99211915	99212180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_99211900_99212200
ES_00013122	chr12	+	2048	16	NNC	ENSMUSG00000021177.17	novel	2036	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	35	junction_1	120.479707834971	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	99850775	99921473	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_99850812_99857438_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ES_00013123	chr12	+	1820	14	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	48	junction_13	129.038226527357	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTACTGTGAGACCTTT	NA	False	NA	2	True	NA	NA	NA	99850778	99885562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
ES_00013126	chr12	+	454	3	FSM	ENSMUSG00000001175.17	ENSMUST00000153524.2	582	3	0	128	0	-128	multi-exon	FALSE	canonical	3	3923	junction_2	23	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGCAGAGTCACTTTCT	9259	False	NA	NA	False	AATGAA	-21	NA	100165787	100170068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_100165976_100168651_100168683_100169833
ES_00013129	chr12	+	803	4	FSM	ENSMUSG00000097121.3	ENSMUST00000221044.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.39934634239519	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGGTTTAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	101050000	101054438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_101050285_101050542_101050759_101052446_101052612_101054300
ES_00013131	chr12	+	2265	4	FSM	ENSMUSG00000044456.17	ENSMUST00000150795.8	937	4	-115	-1213	5	1213	multi-exon	FALSE	canonical	2	5	junction_2	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTTTTGCCTGCGTGT	NA	False	NA	NA	False	AATATA	-20	NA	102249311	102294257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_102249586_102279233_102279442_102292053_102292172_102292592
ES_00013132	chr12	+	3886	10	FSM	ENSMUSG00000044456.17	ENSMUST00000056950.14	3892	10	5	1	5	-1	multi-exon	FALSE	canonical	0	0	junction_8	2.36225462505214	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCTGAAGGAGCCAGAG	NA	False	NA	NA	False	AATAAA	-21	NA	102249311	102357113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_102249586_102279233_102279442_102292053_102292172_102317140_102317214_102324963_102325056_102334622_102336108_102339828_102340138_102348811_102348944_102353812_102353977_102356082
ES_00013133	chr12	+	3205	12	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.82263630907	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724251	102743966	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952_102742051_102742080
ES_00013135	chr12	+	2770	7	NNC	ENSMUSG00000021203.16	novel	2791	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	65	junction_6	12.7638813323639	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8176	False	NA	NA	False	ATTAAA	-16	NA	103354956	103372604	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484_103372384_103372404
ES_00013138	chr12	+	1842	4	FSM	ENSMUSG00000118588.2	ENSMUST00000239375.2	1170	4	-56	-616	-56	616	multi-exon	FALSE	canonical	1	2	junction_1	8.80656320908194	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACAGTGTTCACAGAGC	NA	False	NA	NA	False	AATAAA	-18	NA	104204090	104208198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_104204604_104205293_104205568_104206505_104206657_104207294
ES_00013139	chr12	+	720	4	FSM	ENSMUSG00000112954.2	ENSMUST00000222329.2	757	4	37	0	37	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAAGCCTGACTCCTGAA	NA	False	NA	NA	False	AGTAAA	-12	NA	104486263	104492236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_104486510_104488300_104488416_104489405_104489469_104491940
ES_00013140	chr12	+	206	1	Intergenic	novelGene_979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAAGGTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	104575138	104575344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_104575100_104575300
ES_00013141	chr12	+	1961	2	Intergenic	novelGene_980	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAACTGCTCTGGCCA	NA	False	NA	NA	False	NA	NA	NA	105043686	105082939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_105043885_105081176
ES_00013142	chr12	+	3858	3	FSM	ENSMUSG00000021070.7	ENSMUST00000001652.7	3792	3	-66	0	-66	0	multi-exon	FALSE	canonical	3	6	junction_1	4.5	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGTTTCCCTGTGTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105529418	105561496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105529508_105554455_105554560_105557831
ES_00013143	chr12	+	2446	21	FSM	ENSMUSG00000021111.16	ENSMUST00000168186.8	2436	21	-10	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	380.482125072913	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGTTAAAGTCTGTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	105750952	105801152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968
ES_00013146	chr12	+	2076	2	FSM	ENSMUSG00000113835.2	ENSMUST00000220934.2	2076	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTCTGTCCTTAGTC	3351	False	NA	NA	False	AATAAA	-16	NA	105866099	105868409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105866201_105866434
ES_00013147	chr12	+	279	1	FSM	ENSMUSG00000090607.2	ENSMUST00000165496.2	289	1	6	4	6	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTGGCCTCTCTTTGAG	6349	False	NA	NA	False	AATGAA	-7	NA	107385405	107385684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_107385400_107385700
ES_00013149	chr12	+	278	3	FSM	ENSMUSG00000058070.15	ENSMUST00000148186.2	332	3	54	0	-4	0	multi-exon	FALSE	canonical	3	6	junction_2	1.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCACCTCTTCTCATACC	5841	False	NA	NA	False	NA	NA	NA	108501123	108503686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108501212_108502485_108502582_108503592
ES_00013150	chr12	+	1725	13	FSM	ENSMUSG00000021262.16	ENSMUST00000109854.9	1870	13	145	0	145	0	multi-exon	FALSE	canonical	3	17	junction_10	63.3256574295829	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCAGGCTCTGGCTCAC	NA	False	NA	14	True	AATAAA	-14	NA	108572169	108654772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108572271_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108652308_108652376_108652666_108652725_108654287
ES_00013151	chr12	+	266	1	Intergenic	novelGene_989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCCCCCACAGGCATG	NA	False	NA	NA	False	NA	NA	NA	108739932	108740198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_108739900_108740200
ES_00013152	chr12	+	4356	8	FSM	ENSMUSG00000040877.17	ENSMUST00000047115.9	4356	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	24.6791657980937	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4895	False	NA	NA	False	NA	NA	NA	108860242	108994378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108861816_108862817_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ES_00013153	chr12	+	1547	3	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-9	26953	-5	0	intron_retention	FALSE	canonical	3	281	junction_2	112.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506878	109511202	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_109506983_109509582_109509733_109509909
ES_00013155	chr12	+	1843	10	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	145.012983667321	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506897	109538156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00013156	chr12	+	1542	7	NIC	ENSMUSG00000021268.18	novel	1988	9	NA	NA	10	-8	combination_of_known_splicesites	FALSE	canonical	3	20	junction_3	164.347954048719	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTTTAACTAAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	109506899	109538145	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00013161	chr12	+	1553	1	FSM	ENSMUSG00000097391.9	ENSMUST00000183084.2	1553	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATGCTTGCGTGTCTGT	4728	False	NA	18	True	AATAAA	-18	NA	109714336	109715889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109714300_109715900
ES_00013162	chr12	+	523	2	Genic_Genomic	ENSMUSG00000113198.2	novel	375	1	NA	NA	-60	87475	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAAGGTTTTTCTACCT	3134	False	NA	NA	False	NA	NA	NA	110282363	110370273	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_110282862_110370248
ES_00013163	chr12	+	4130	13	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1693	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	330.420943646131	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGCTCTATGAAACTAAATT	3227	False	NA	3	True	AATAAA	-17	NA	110450478	110549496	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110546834
ES_00013167	chr12	+	2126	13	NNC	ENSMUSG00000018707.14	novel	14342	77	NA	NA	16	-1	intron_retention	TRUE	non_canonical	0	0	junction_5	170.414364287626	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTGCTGTGGGAATC	NA	False	NA	38	True	AATAAA	-39	NA	110627383	110633378	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629122_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ES_00013169	chr12	+	249	1	Intergenic	novelGene_991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAATAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	110829051	110829300	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_110829100_110829300
ES_00013170	chr12	+	2283	1	FSM	ENSMUSG00000113200.2	ENSMUST00000221105.2	2742	1	-67	526	-67	-526	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCAGTCTTATTGAGT	NA	False	NA	NA	False	NA	NA	NA	111057566	111059849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111057600_111059800
ES_00013171	chr12	+	7262	13	NIC	ENSMUSG00000021277.17	novel	7060	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_2	15.2886577421157	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGCTCTCTGGCTGTGG	NA	False	NA	9	True	AATAAA	-13	NA	111132803	111233582	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111133037_111133432_111133542_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
ES_00013172	chr12	+	575	4	FSM	ENSMUSG00000021281.16	ENSMUST00000127028.3	771	4	196	0	196	0	multi-exon	FALSE	canonical	1	1	junction_1	2.44948974278318	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCAGTGGCTCCAGCTCC	8611	False	NA	NA	False	NA	NA	NA	111417148	111420060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111417240_111417476_111417633_111417784_111417907_111419854
ES_00013175	chr12	+	3543	11	FSM	ENSMUSG00000021282.18	ENSMUST00000222388.2	3543	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_8	924.275527102173	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATCACTTGGGGTT	NA	False	NA	6	True	AAAACA	-12	NA	111504649	111513180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111504674_111504788_111504983_111505980_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509533_111509699_111509960_111510096_111510962
ES_00013182	chr12	+	665	6	FSM	ENSMUSG00000037787.15	ENSMUST00000163220.10	671	6	-19	25	0	-25	multi-exon	FALSE	canonical	2	6	junction_4	244.938686205344	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCAAATAAACCCTTTC	1541	False	NA	NA	False	NA	NA	NA	111679694	111721462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111717620_111717710_111721397
ES_00013183	chr12	+	2364	16	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	46	-3	combination_of_known_splicesites	FALSE	canonical	2	52	junction_13	31.1312633144811	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATCTACCAGAATGAAAG	NA	False	NA	NA	False	ATTAAA	-15	NA	111725328	111773142	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111761981_111762113_111772441_111772509_111772748
ES_00013186	chr12	+	488	2	FSM	ENSMUSG00000037686.7	ENSMUST00000223457.2	476	2	18	-30	18	30	multi-exon	FALSE	canonical	3	27	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCCATGTGAGCCATTT	NA	False	NA	NA	False	NA	NA	NA	112073130	112078836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_112073408_112078625
ES_00013187	chr12	+	771	3	FSM	ENSMUSG00000037686.7	ENSMUST00000221091.2	754	3	-17	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	10.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTCTCTGGATTTAGC	NA	False	NA	NA	False	NA	NA	NA	112073302	112079971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_112073408_112078625_112078735_112079414
ES_00013188	chr12	+	2382	14	NIC	ENSMUSG00000037686.7	novel	2722	15	NA	NA	9	2	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	7.63982093411393	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGCCTGGATGGGTCT	NA	False	NA	4	True	AATAAA	-18	NA	112073328	112093995	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_112073408_112078625_112078735_112079414_112079527_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
ES_00013190	chr12	+	3165	1	NIC	ENSMUSG00000037679.10	novel	2795	15	NA	NA	7734	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGTATTTAGAC	NA	False	NA	9	True	AATAAA	-17	NA	112578824	112581989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_112578800_112582000
ES_00013198	chr12	+	1267	7	FSM	ENSMUSG00000006356.11	ENSMUST00000200380.5	864	7	0	-403	0	0	multi-exon	FALSE	canonical	2	2	junction_1	280.828189863878	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5958	False	NA	30	True	AATAAA	-23	NA	113104191	113109126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113104399_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ES_00013199	chr12	+	359	2	FSM	ENSMUSG00000006356.11	ENSMUST00000199976.2	359	2	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGTCACCACATTCACT	8856	False	NA	NA	False	NA	NA	NA	113107089	113107851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113107232_113107634
ES_00013201	chr12	+	3420	9	FSM	ENSMUSG00000037466.14	ENSMUST00000196755.5	4000	9	-19	599	0	-599	multi-exon	FALSE	canonical	0	0	junction_8	91.5941284963179	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCGGAACGCTTGAGTGT	NA	False	NA	NA	False	TTTAAA	-27	NA	113120040	113129069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672_113128361_113128393
ES_00013202	chr12	+	3138	7	NIC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	4	-600	intron_retention	FALSE	canonical	3	28	junction_2	73.0032343271325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120044	113129068	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_113120192_113120294_113120374_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ES_00013205	chr12	+	5617	9	FSM	ENSMUSG00000021171.9	ENSMUST00000223150.2	4187	9	-612	-818	-612	818	multi-exon	FALSE	canonical	3	176	junction_1	17.7125485179293	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTAAAGTATACATGTTA	NA	False	NA	NA	False	NA	NA	NA	116319926	116337529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_116320807_116321467_116321555_116327014_116327165_116329174_116329549_116330549_116330649_116331327_116331460_116332355_116332462_116333631_116333682_116333790
ES_00013210	chr12	-	3569	3	FSM	ENSMUSG00000071456.7	ENSMUST00000168012.3	3569	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	29.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGCCTGGGTTTGTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	3477011	3453877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_3456712_3457700_3457925_3476500
ES_00013211	chr12	-	404	4	FSM	ENSMUSG00000020658.11	ENSMUST00000219797.2	437	4	33	0	33	0	multi-exon	FALSE	canonical	2	3	junction_3	0.816496580927726	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATGGAGGACGCAGAAAT	7116	False	NA	NA	False	NA	NA	NA	4031815	4028007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4028086_4030141_4030194_4030450_4030563_4031653
ES_00013212	chr12	-	397	2	NNC	ENSMUSG00000112819.2	novel	457	3	NA	NA	-113	4	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	0	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTCTTGGCTACATTTC	NA	False	NA	NA	False	NA	NA	NA	4603898	4602541	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_4602731_4603690
ES_00013213	chr12	-	229	2	NNC	ENSMUSG00000112505.2	novel	399	3	NA	NA	4179	3312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGCTGCTTGGAAGTC	NA	False	NA	NA	False	NA	NA	NA	4622577	4619088	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_4619125_4622384
ES_00013214	chr12	-	405	1	Intergenic	novelGene_823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGGGGAGGAAAGAGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	4637269	4636864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_4636900_4637300
ES_00013215	chr12	-	2381	1	FSM	ENSMUSG00000118449.2	ENSMUST00000238375.2	3233	1	-193	1045	-193	-1045	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTGATGTAGCAACCCT	NA	False	NA	NA	False	NA	NA	NA	4643222	4640841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4640800_4643200
ES_00013216	chr12	-	291	1	FSM	ENSMUSG00000091732.2	ENSMUST00000080062.7	525	1	276	-42	276	42	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGAAATGTTTCTGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	4739650	4739359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4739400_4739600
ES_00013217	chr12	-	1912	7	FSM	ENSMUSG00000050545.11	ENSMUST00000053458.7	2851	7	0	939	0	752	multi-exon	FALSE	canonical	3	18	junction_3	2.69258240356725	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCATGTGGGTGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	4819232	4797154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
ES_00013220	chr12	-	223	1	FSM	ENSMUSG00000112413.2	ENSMUST00000219165.2	425	1	41	161	41	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGGCATGTACAACGGCA	NA	False	NA	NA	False	NA	NA	NA	11810831	11810608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_11810600_11810800
ES_00013223	chr12	-	1853	6	FSM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	0	-147	0	97	multi-exon	FALSE	canonical	3	14	junction_2	66.9943281181325	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACTACATCTAAACATAA	NA	False	NA	98	True	NA	NA	NA	17050068	17038551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_17039897_17042278_17042321_17045614_17045673_17047634_17047705_17047774_17047858_17049813
ES_00013224	chr12	-	361	3	FSM	ENSMUSG00000045679.15	ENSMUST00000141232.8	361	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	87.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTCAGGAGCTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	17050027	17043510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_17043575_17047774_17047858_17049813
ES_00013225	chr12	-	276	1	FSM	ENSMUSG00000113612.2	ENSMUST00000222538.2	161	1	45	-160	45	160	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTGGGGTCTCACTTCCT	NA	False	NA	NA	False	NA	NA	NA	17945428	17945152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_17945200_17945400
ES_00013226	chr12	-	4397	1	FSM	ENSMUSG00000113411.2	ENSMUST00000223086.2	370	1	-341	-3686	-341	3686	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTCCTTGTATTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	19915837	19911440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_19911400_19915800
ES_00013229	chr12	-	1933	5	Intergenic	novelGene_849	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	50.4727649331796	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTCTCCATTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	21834466	21807779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_21808465_21808800_21809538_21810872_21810934_21811135_21811263_21834143
ES_00013231	chr12	-	735	4	NNC	ENSMUSG00000093846.2	novel	2857	5	NA	NA	13	-12914	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.3372087784044	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACACCCAGTCATCTTCA	NA	False	NA	NA	False	NA	NA	NA	22206634	22178670	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_22178816_22180145_22180207_22180406_22180534_22206232
ES_00013232	chr12	-	4258	4	Genic_Genomic	ENSMUSG00000113344.2	novel	133	1	NA	NA	-498	21309	multi-exon	FALSE	canonical	3	27	junction_3	9.80929264637477	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTATTTTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	22517217	22495277	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_22498722_22500163_22500225_22500426_22500554_22516591
ES_00013233	chr12	-	2662	5	NNC	ENSMUSG00000113123.3	novel	734	5	NA	NA	-48	2187	intron_retention	TRUE	non_canonical	0	0	junction_1	6.28490254498827	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACTGGAGAGAAATATA	NA	False	NA	NA	False	NA	NA	NA	22673394	22633702	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_22635035_22635202_22635913_22637248_22637310_22637509_22637637_22672962
ES_00013237	chr12	-	3342	5	FSM	ENSMUSG00000073164.12	ENSMUST00000149246.8	3370	5	31	-3	-10	1	multi-exon	FALSE	canonical	0	0	junction_3	1.87082869338697	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGTGAGTTTCCCATG	NA	False	NA	NA	False	NA	NA	NA	23060254	23003996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_23004839_23008352_23010256_23042788_23042850_23043051_23043179_23059845
ES_00013238	chr12	-	387	1	FSM	ENSMUSG00000113798.2	ENSMUST00000221724.2	126	1	-288	27	-288	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	2693	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGACACCGTGGCGGCCAT	NA	False	NA	NA	False	NA	NA	NA	23239687	23239300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_23239300_23239700
ES_00013239	chr12	-	842	3	Intergenic	novelGene_858	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	6	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCAGTCATCTCCACTGT	NA	False	NA	NA	False	NA	NA	NA	23339263	23336890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_23337544_23338874_23338936_23339135
ES_00013241	chr12	-	4396	4	Genic_Genomic	ENSMUSG00000112997.2	novel	126	1	NA	NA	-284	21707	multi-exon	FALSE	canonical	3	21	junction_3	10.6249183003395	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23684760	23662643	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_23666442_23667883_23667945_23668146_23668274_23684350
ES_00013242	chr12	-	359	1	Intergenic	novelGene_863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCACTGAGCCCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	23916782	23916423	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_23916400_23916800
ES_00013246	chr12	-	339	1	FSM	ENSMUSG00000057160.3	ENSMUST00000073088.3	450	1	53	58	53	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTGAGGGAGGAGTGG	NA	False	NA	NA	False	NA	NA	NA	24543602	24543263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_24543300_24543600
ES_00013248	chr12	-	326	3	FSM	ENSMUSG00000020672.15	ENSMUST00000125530.2	688	3	63	299	-15	-299	multi-exon	FALSE	canonical	0	0	junction_2	0.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAGCTAAAATAAACACTT	NA	False	NA	NA	False	NA	NA	NA	30423279	30359662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_30359728_30362534_30362673_30423156
ES_00013249	chr12	-	1800	7	NNC	ENSMUSG00000020648.4	novel	1773	7	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	41.3145118437685	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCGCCTGTAAGTTAAC	9060	False	NA	2	True	AATAAA	-24	NA	31704825	31690041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_31690944_31691500_31691748_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
ES_00013252	chr12	-	1665	12	FSM	ENSMUSG00000002997.16	ENSMUST00000003079.12	1657	12	0	-8	0	8	multi-exon	FALSE	canonical	2	2	junction_1	6.20849857416868	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTTTTCTTCTTTATT	NA	False	NA	NA	False	AATAAA	-27	NA	32111234	32008466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_32008721_32010380_32010522_32012997_32013137_32013896_32013963_32015113_32015189_32017211_32017314_32022048_32022203_32025917_32026025_32037878_32037963_32043729_32043783_32088620_32088657_32110780
ES_00013255	chr12	-	478	1	FSM	ENSMUSG00000113520.2	ENSMUST00000222877.2	513	1	-47	82	-47	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACCCCCGGTGTCAGGCA	NA	False	NA	NA	False	NA	NA	NA	38792256	38791778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_38791800_38792300
ES_00013256	chr12	-	205	2	Antisense	novelGene_ENSMUSG00000035954.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	105	junction_1	0	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTTCTCCAGGAAACCAC	NA	False	NA	NA	False	AAAAAG	-2	NA	40652763	40629283	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_40629433_40652707
ES_00013257	chr12	-	789	1	FSM	ENSMUSG00000113510.2	ENSMUST00000220981.2	860	1	-33	104	-33	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAGAAGATATTGATGAG	NA	False	NA	NA	False	NA	NA	NA	40934646	40933857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_40933900_40934600
ES_00013258	chr12	-	4256	1	FSM	ENSMUSG00000112823.2	ENSMUST00000217983.2	3472	1	-228	-556	-228	556	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACGTGGGCATATCATGG	NA	False	NA	NA	False	AAAACA	-5	NA	44669673	44665417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_44665400_44669700
ES_00013260	chr12	-	3768	18	NIC	ENSMUSG00000002688.9	novel	3653	19	NA	NA	-139	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	4.97606729001332	255	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGTCATACTAATCAA	NA	False	NA	-4	True	AATAAA	-14	NA	50696020	50388013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612_50441824_50472221_50472383_50474885_50475018_50536685_50536825_50695498
ES_00013261	chr12	-	9075	43	NNC	ENSMUSG00000035247.17	novel	8988	43	NA	NA	-223	5	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_19	32.5636390713501	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCGTGTTACTGGTT	NA	False	NA	0	True	ATTAAA	-19	NA	51876542	51790499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816008_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
ES_00013262	chr12	-	9284	43	NNC	ENSMUSG00000035247.17	novel	8988	43	NA	NA	-301	1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_16	34.9284415877095	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCTGTGTCGTGTTACT	NA	False	NA	-4	True	ATTAAA	-15	NA	51876620	51790503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810809_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
ES_00013268	chr12	-	709	5	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	5	2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	91.499658469308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAAATGTTTTGTTTG	NA	False	NA	-12	True	AATAAA	-27	NA	55126884	55092458	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55109772_55109895_55126765
ES_00013269	chr12	-	809	6	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	13	-1	combination_of_known_splicesites	FALSE	canonical	3	8	junction_4	82.0243866176395	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGAAATGTTTTGT	NA	False	NA	-15	True	AATAAA	-24	NA	55126876	55092461	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55109772_55109895_55126765
ES_00013270	chr12	-	1012	8	NNC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-307	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	67.6159623709294	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGAAATGTTTTGT	NA	False	NA	-15	True	AATAAA	-24	NA	55127202	55092461	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55127149
ES_00013272	chr12	-	4110	5	FSM	ENSMUSG00000062198.6	ENSMUST00000156852.2	4110	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	29.9864552756741	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAGAAATTAACTA	NA	False	NA	NA	False	NA	NA	NA	55126893	55100538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ES_00013273	chr12	-	2454	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	14	-1730	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_13	69.7240545793362	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTTTTTGGTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	55349769	55327505	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349717
ES_00013274	chr12	-	1445	9	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	94	junction_1	75.0598719356755	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCATGTCTTTTTTACT	NA	False	NA	NA	False	AATAAA	-31	NA	56392617	56375089	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_56375582_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ES_00013275	chr12	-	3090	2	FSM	ENSMUSG00000035451.8	ENSMUST00000044380.8	3191	2	0	101	0	-101	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTCAATAACAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	57592907	57587514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_57590147_57592449
ES_00013276	chr12	-	797	5	FSM	ENSMUSG00000020993.10	ENSMUST00000217863.2	797	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	126.52149026944	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTAAACATCTTTATT	NA	False	NA	NA	False	NA	NA	NA	59108238	59090232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_59090463_59094908_59094993_59097053_59097172_59098426_59098495_59107941
ES_00013277	chr12	-	737	6	FSM	ENSMUSG00000020993.10	ENSMUST00000218799.2	737	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	118.145672794225	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTGACTGACCTATTC	NA	False	NA	NA	False	NA	NA	NA	59108130	59090291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097185_59098426_59098495_59107941
ES_00013279	chr12	-	654	5	FSM	ENSMUSG00000020949.10	ENSMUST00000220983.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4405.18495638946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCTTGTAAACTAGAAGA	NA	False	NA	-59	True	NA	NA	NA	65120674	65109254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_65109515_65110451_65110550_65115775_65115884_65116724_65116827_65120588
ES_00013283	chr12	-	601	3	NNC	ENSMUSG00000049751.7	novel	526	2	NA	NA	-39	15634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2666	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAACACCTTCCTAAAGTA	NA	False	NA	NA	False	AAAAAG	-9	NA	69230896	69213870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_69213899_69229506_69229940_69230756
ES_00013284	chr12	-	1283	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	0	-7	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230787	69229504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69229500_69230800
ES_00013288	chr12	-	300	1	FSM	ENSMUSG00000118841.1	ENSMUST00000174924.4	300	1	-1	1	-1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTCTCTATCCCTCAC	NA	False	NA	NA	False	NA	NA	NA	69408256	69407956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69408000_69408300
ES_00013290	chr12	-	951	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	93	-169	0	0	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAACGTTGACAATC	NA	False	NA	-59	True	NA	NA	NA	69629791	69624455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
ES_00013294	chr12	-	4407	31	NIC	ENSMUSG00000034761.16	novel	4498	32	NA	NA	7	-4	combination_of_known_splicesites	FALSE	canonical	1	42	junction_9	20.3279774366922	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTATTTGTTCTTTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	69939890	69850527	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865273_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
ES_00013295	chr12	-	689	1	FSM	ENSMUSG00000078370.2	ENSMUST00000082064.5	1020	1	292	39	292	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGGACCTCATGGCCTA	8159	False	NA	NA	False	AATGAA	-19	NA	69967973	69967284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_69967300_69968000
ES_00013296	chr12	-	2563	5	NNC	ENSMUSG00000021067.9	novel	2524	5	NA	NA	-105	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	61.6699886492612	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGTCCTTGAATGCA	NA	False	NA	-14	True	ATTAAA	-17	NA	70033881	70011785	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_70013122_70015843_70015988_70022741_70023013_70030982_70031361_70033447
ES_00013297	chr12	-	9876	30	NIC	ENSMUSG00000021068.18	novel	9919	30	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	3	junction_29	10.7284058477154	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTTTCTGCCTTGG	NA	False	NA	-2	True	AATAAA	-17	NA	70158801	70058208	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_70061731_70064346_70064461_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905_70091027_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158627
ES_00013298	chr12	-	695	4	FSM	ENSMUSG00000085622.10	ENSMUST00000127129.8	722	4	9	18	8	-18	multi-exon	FALSE	canonical	1	1	junction_1	5.43650214343336	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAACCATATTCAGCAA	NA	False	NA	NA	False	NA	NA	NA	71062361	71038406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71038830_71057114_71057254_71061229_71061282_71062280
ES_00013299	chr12	-	900	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	245	-82	8	82	multi-exon	FALSE	canonical	3	10	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTAAAGCTTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	71062361	71056486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71057254_71061229_71061282_71062280
ES_00013300	chr12	-	210	2	Antisense	novelGene_ENSMUSG00000048118.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	101	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCTTGGAGGCAAAGT	2050	False	NA	NA	False	NA	NA	NA	71112038	71092504	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_71092666_71111989
ES_00013301	chr12	-	2571	3	FSM	ENSMUSG00000021079.17	ENSMUST00000221797.2	2564	3	0	-7	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183449	71169946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71172332_71173106_71173172_71183328
ES_00013303	chr12	-	343	1	FSM	ENSMUSG00000098224.2	ENSMUST00000183329.2	981	1	119	519	119	-519	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGCCAAAGTCATCCAT	NA	False	NA	NA	False	NA	NA	NA	71893946	71893603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71893600_71893900
ES_00013304	chr12	-	3104	8	NIC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	-968	912	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	8.57618915417351	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATATTTTGATGCATAAT	NA	False	NA	NA	False	NA	NA	NA	72954215	72926970	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72945260_72945308_72945483_72945570_72949989_72950109_72952964
ES_00013305	chr12	-	2376	5	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_4	37.6056844107377	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCACACAGATATTTGTTA	NA	False	NA	-95	True	NA	NA	NA	73333483	73327254	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73332677
ES_00013306	chr12	-	2089	5	NNC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-23	-50	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	37.7160443312922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCACAAAATAAGCGAACA	NA	False	NA	-56	True	NA	NA	NA	73333507	73326834	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_73327407_73327729_73328431_73329385_73329511_73331408_73332050_73333457
ES_00013308	chr12	-	3130	1	FSM	ENSMUSG00000034435.7	ENSMUST00000042975.7	2991	1	-151	12	-151	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCTGTTATCACATT	NA	False	NA	NA	False	AATAAA	-12	NA	73593317	73590187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_73590200_73593300
ES_00013309	chr12	-	404	3	NNC	ENSMUSG00000113031.2	novel	636	3	NA	NA	87	234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCAGTCCAGTTCCCT	NA	False	NA	NA	False	AATAAA	-30	NA	74363849	74360740	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_74360904_74362065_74362187_74363729
ES_00013310	chr12	-	448	3	NNC	ENSMUSG00000045690.9	novel	2979	2	NA	NA	38209	109309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	75678092	75568060	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_75568086_75628276_75628299_75677691
ES_00013311	chr12	-	430	3	NNC	ENSMUSG00000045690.9	novel	2979	2	NA	NA	38209	109309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	75678092	75568060	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_75568086_75628276_75628301_75677711
ES_00013313	chr12	-	206	2	Intergenic	novelGene_922	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAGAGGACTCTTGAAGA	NA	False	NA	NA	False	NA	NA	NA	76283317	76266246	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_76266280_76283144
ES_00013314	chr12	-	1448	1	FSM	ENSMUSG00000112096.2	ENSMUST00000220077.2	857	1	-655	64	-655	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTAACCGCTCTCTC	NA	False	NA	-1	True	NA	NA	NA	76392810	76391362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76391400_76392800
ES_00013315	chr12	-	3414	4	NNC	ENSMUSG00000056459.15	novel	1672	3	NA	NA	-202	399	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	38.262252939418	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCTGCCCCCGGGCGTG	NA	False	NA	NA	False	NA	NA	NA	76416578	76394156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_76395269_76395290_76397048_76402662_76402843_76416213
ES_00013316	chr12	-	488	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176187.8	488	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACAAGGGCTGGAGATC	NA	False	NA	NA	False	AAAACA	-5	NA	76416167	76396799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76397048_76402662_76402843_76416107
ES_00013317	chr12	-	8251	32	ISM	ENSMUSG00000021061.16	ENSMUST00000021458.13	10394	36	419	15580	-105	62	5prime_fragment	FALSE	canonical	2	6	junction_26	5.26211994803944	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGATTGGAAATGCAACC	NA	False	NA	NA	False	NA	NA	NA	76756902	76642841	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655472_76655814_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337_76660095_76665812_76665951_76667429_76668301_76668916_76669068_76669682_76669986_76671000_76671160_76671769_76671888_76673721_76673910_76674655_76674769_76675249_76675366_76675668_76675750_76676386_76676479_76677358_76677533_76679153_76679306_76696550_76696753_76756708
ES_00013318	chr12	-	217	1	Intergenic	novelGene_926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAAAAGCATGGCTTTCT	2760	False	NA	NA	False	NA	NA	NA	76907720	76907503	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_76907500_76907700
ES_00013319	chr12	-	2115	5	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-99	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5714979643834	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77009074	76984042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008763
ES_00013321	chr12	-	3896	3	FSM	ENSMUSG00000046157.14	ENSMUST00000056660.13	3860	3	-31	-5	-31	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTGACCCATCTGTT	NA	False	NA	-1	True	CATAAA	-26	NA	79054082	79008568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79011948_79024534_79024716_79053746
ES_00013322	chr12	-	537	3	FSM	ENSMUSG00000046157.14	ENSMUST00000174721.8	537	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACTACTCCCAGTTCGAC	NA	False	NA	NA	False	NA	NA	NA	79054114	79011622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79011951_79024534_79024716_79054086
ES_00013323	chr12	-	734	4	NNC	ENSMUSG00000021120.12	novel	2339	4	NA	NA	6	-1006	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	51.7451017542294	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTGATTCATGTTCATA	NA	False	NA	NA	False	GGGGCT	-2	NA	79136413	79129027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_79129271_79130389_79130471_79132420_79132631_79136213
ES_00013324	chr12	-	759	4	NNC	ENSMUSG00000021120.12	novel	2339	4	NA	NA	-18	-1006	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	41.7212975189731	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTGATTCATGTTCATA	NA	False	NA	NA	False	GGGGCT	-2	NA	79136443	79129027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_79129271_79130389_79130471_79132420_79132626_79136213
ES_00013330	chr12	-	888	6	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	0	60864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4279.47347228605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGGGCGTTCACAGCCTT	NA	False	NA	NA	False	NA	NA	NA	80690606	80619931	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_80619972_80680797_80681302_80682588_80682655_80684263_80684385_80687730_80687819_80690537
ES_00013331	chr12	-	831	5	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	0	60859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4374.73087743692	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCAAGGGGCGTTCACA	NA	False	NA	NA	False	NA	NA	NA	80690622	80619936	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_80619972_80680797_80681302_80684265_80684385_80687730_80687819_80690537
ES_00013332	chr12	-	1202	7	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	0	60859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3355.69053996342	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCAAGGGGCGTTCACA	NA	False	NA	NA	False	NA	NA	NA	80690885	80619936	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_80619972_80680814_80681302_80682588_80682655_80684263_80684385_80687730_80687819_80689562_80689620_80690537
ES_00013333	chr12	-	2151	4	FSM	ENSMUSG00000021131.15	ENSMUST00000218364.2	665	4	0	-1486	0	-2	multi-exon	FALSE	canonical	2	6	junction_1	4135.44491761971	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTTTCTTATTTAT	NA	False	NA	-3	True	AATAAA	-29	NA	80690622	80680797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80682655_80684263_80684385_80687730_80687819_80690537
ES_00013336	chr12	-	213	1	Intergenic	novelGene_933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	559	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTTACACTCTTAATCA	NA	False	NA	NA	False	NA	NA	NA	80700328	80700115	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_80700100_80700300
ES_00013337	chr12	-	228	2	Antisense	novelGene_ENSMUSG00000119334.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAAGGTCAGTCTGGTCT	4390	False	NA	NA	False	NA	NA	NA	80964403	80933608	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_80933639_80964205
ES_00013338	chr12	-	391	2	Intergenic	novelGene_935	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGATTGAATCGATACAAG	NA	False	NA	NA	False	NA	NA	NA	80977691	80972100	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_80972443_80977642
ES_00013340	chr12	-	309	2	Intergenic	novelGene_944	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCCTGTCTCAAAAAA	94	False	NA	NA	False	NA	NA	NA	83668397	83662670	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_83662935_83668352
ES_00013341	chr12	-	660	1	FSM	ENSMUSG00000113431.2	ENSMUST00000221586.2	390	1	-106	-164	-106	164	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATTCGAGGCTTAACCA	542	False	NA	NA	False	NA	NA	NA	83667949	83667289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_83667300_83667900
ES_00013343	chr12	-	3572	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	0	12	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	26.5375206076227	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTAATCTCTCTTTTT	NA	False	NA	12	True	NA	NA	NA	83968657	83840795	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ES_00013344	chr12	-	3655	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	2	12	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	30.4074262351803	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTAATCTCTCTTTTT	NA	False	NA	12	True	NA	NA	NA	83968655	83840795	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ES_00013346	chr12	-	2195	16	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	3227	-122	1244	2	3prime_fragment	FALSE	canonical	3	177	junction_14	24.1887025971492	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	84660917	84649304	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
ES_00013348	chr12	-	324	2	Antisense	novelGene_ENSMUSG00000071235.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGTTTCGAAAAACAAACAAA	5836	False	NA	NA	False	NA	NA	NA	84692958	84664873	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_84665147_84692907
ES_00013349	chr12	-	1775	6	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-491	-34	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	53.0938791199136	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTCTCCTGTGTCAGA	600	False	NA	-43	True	AATAAA	-16	NA	85187254	85182447	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186411_85187117
ES_00013351	chr12	-	5544	12	FSM	ENSMUSG00000021245.16	ENSMUST00000166821.8	5420	12	-61	-63	-53	54	multi-exon	FALSE	canonical	1	1	junction_11	26.9149256573466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATCAGAATGCATCATT	NA	False	NA	NA	False	TATAAA	-18	NA	85317426	85281239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85317338
ES_00013352	chr12	-	1777	1	FSM	ENSMUSG00000021248.10	ENSMUST00000223375.2	2361	1	770	-186	35	186	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGATGAAACTCGCCGT	9391	False	NA	NA	False	NA	NA	NA	85420694	85418917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85418900_85420700
ES_00013359	chr12	-	820	5	FSM	ENSMUSG00000021257.15	ENSMUST00000163388.2	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	8.69985632065266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACTGGATCGAGATGGA	NA	False	NA	NA	False	NA	NA	NA	86764960	86749212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488
ES_00013360	chr12	-	2774	20	FSM	ENSMUSG00000034126.6	ENSMUST00000222634.2	2774	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_15	10.3591997466301	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCACATTGGATTTGG	6077	False	NA	13	True	CATAAA	-42	NA	87194248	87155577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
ES_00013361	chr12	-	1666	9	FSM	ENSMUSG00000034126.6	ENSMUST00000222147.2	3855	9	0	2189	0	-2189	multi-exon	FALSE	canonical	3	48	junction_4	9.96164519544839	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGTAACCAGGTGAAGTA	5583	False	NA	NA	False	NA	NA	NA	87194742	87174075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
ES_00013362	chr12	-	2545	21	NNC	ENSMUSG00000021038.18	novel	2524	20	NA	NA	0	42366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.9810247813277	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGGCTAATTATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	87313027	87243275	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_87243302_87285648_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ES_00013363	chr12	-	2359	13	NNC	ENSMUSG00000021036.11	novel	6710	12	NA	NA	-175	20607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.649225863356	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTCTTGGTCAGGCTG	8521	False	NA	NA	False	NA	NA	NA	87435304	87331224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_87331255_87356387_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
ES_00013366	chr12	-	3695	1	FSM	ENSMUSG00000079036.11	ENSMUST00000176758.3	3598	1	-426	329	-426	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	570	False	NA	-2	True	ATTAAA	-15	NA	87476633	87472938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87472900_87476600
ES_00013368	chr12	-	4000	8	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_6	101.263245543283	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490596	87472938	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ES_00013369	chr12	-	3934	7	FSM	ENSMUSG00000079036.11	ENSMUST00000160113.8	2019	7	-7	-1908	0	0	multi-exon	FALSE	canonical	3	24	junction_5	112.096312755297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490603	87472938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
ES_00013374	chr12	-	413	1	FSM	ENSMUSG00000113861.2	ENSMUST00000220683.2	1374	1	913	48	913	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGAGAACCAAGAGTTACC	NA	False	NA	NA	False	NA	NA	NA	88320543	88320130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_88320100_88320500
ES_00013375	chr12	-	1757	14	FSM	ENSMUSG00000061533.17	ENSMUST00000127802.8	1750	14	0	-7	0	7	multi-exon	FALSE	canonical	3	6	junction_11	16.8824687613894	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGGAGGCAAATAATAT	6152	False	NA	NA	False	AATAAA	-24	NA	91351183	91256159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336854_91336971_91348421_91348563_91351007
ES_00013376	chr12	-	6058	10	NNC	ENSMUSG00000020962.15	novel	6064	9	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	336.998003437688	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATTTTGCAGTTT	1230	False	NA	0	True	AATAAA	-23	NA	91556798	91522035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308_91556409_91556429
ES_00013377	chr12	-	1955	10	NNC	ENSMUSG00000020962.15	novel	6064	9	NA	NA	-148	-542	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_7	431.725478619098	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATTTTTACTTGTCACT	1467	False	NA	NA	False	AAGAAA	-26	NA	91556561	91526003	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91552148_91552230_91553473_91553576_91556308
ES_00013378	chr12	-	2844	1	ISM	ENSMUSG00000020961.16	ENSMUST00000052969.15	9896	7	150584	0	78122	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGCAGTGTTTAATGAAT	NA	False	NA	-1	True	AATAAA	-18	NA	91602626	91599782	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_91599800_91602600
ES_00013379	chr12	-	3716	4	NIC	ENSMUSG00000020961.16	novel	9896	7	NA	NA	27855	3246	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	9.7410927974683	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGACTCGAGCTTTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	91652893	91605070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_91606580_91608494_91608698_91614005_91615845_91652728
ES_00013380	chr12	-	719	4	FSM	ENSMUSG00000020961.16	ENSMUST00000170077.2	731	4	12	0	12	0	multi-exon	FALSE	canonical	1	5	junction_1	2.16024689946929	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTGAGAAGATGCCCTT	155	False	NA	NA	False	NA	NA	NA	91745899	91680855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91680899_91707244_91707521_91710379_91710653_91745772
ES_00013382	chr12	-	1802	1	FSM	ENSMUSG00000094935.3	ENSMUST00000180321.3	678	1	-754	-370	-754	370	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTCTTCTTAACTGGGA	NA	False	NA	NA	False	NA	NA	NA	93896198	93894396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_93894400_93896200
ES_00013383	chr12	-	5591	18	ISM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	745	-5	13	4	3prime_fragment	FALSE	canonical	3	24	junction_6	7.52435491952747	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTTCCTGTTGCAATACT	NA	False	NA	5	True	ATTAAA	-20	NA	98700159	98642995	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732
ES_00013389	chr12	-	2095	1	FSM	ENSMUSG00000113020.2	ENSMUST00000222872.2	2517	1	-1436	1858	-1436	-1858	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGCCCTAATAGAAATGAA	NA	False	NA	NA	False	NA	NA	NA	98780894	98778799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_98778800_98780900
ES_00013391	chr12	-	2589	1	FSM	ENSMUSG00000113003.2	ENSMUST00000223213.2	3370	1	798	-17	798	17	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGATCAGACTG	NA	False	NA	NA	False	NA	NA	NA	99335374	99332785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_99332800_99335400
ES_00013393	chr12	-	1238	2	Intergenic	novelGene_972	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTCAATTATTCTTTGG	NA	False	NA	NA	False	AAAAAG	-45	NA	100147222	100145843	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_100146935_100147075
ES_00013394	chr12	-	620	5	FSM	ENSMUSG00000021180.10	ENSMUST00000221356.2	620	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.25675429078681	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTCTGATGACTCCAGAC	NA	False	NA	NA	False	AATGAA	-32	NA	100541486	100519333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_100519424_100520532_100520693_100537087_100537259_100540689_100540784_100541381
ES_00013395	chr12	-	2928	3	FSM	ENSMUSG00000047415.13	ENSMUST00000053668.10	3099	3	177	-6	58	3	multi-exon	FALSE	canonical	1	1	junction_1	0.5	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGTGCAGTCCTTATA	NA	False	NA	NA	False	AATAAA	-22	NA	100865606	100842937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_100845672_100854242_100854332_100865501
ES_00013396	chr12	-	9964	30	NIC	ENSMUSG00000021182.17	novel	7542	30	NA	NA	-136	4	intron_retention	FALSE	canonical	3	38	junction_5	23.6224263142098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGTTTTCTTCAGTAA	NA	False	NA	1	True	AATAAA	-21	NA	100995451	100877777	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100891910_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
ES_00013397	chr12	-	6009	5	FSM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	77.0632856813152	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTAATTGTATGTTTC	1207	False	NA	-24	True	AATAAA	-25	NA	101014928	101005770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748
ES_00013400	chr12	-	9704	21	NIC	ENSMUSG00000021188.15	novel	9873	21	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	6.63400331624879	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTTCGTCCACAAT	7551	False	NA	NA	False	AATAAA	-15	NA	101879396	101800303	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845152_101849514_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
ES_00013401	chr12	-	338	4	NNC	ENSMUSG00000113902.2	novel	861	3	NA	NA	220	104634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	868.130686526452	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGAGAGCCTGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	101941966	101829714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_101829745_101934354_101934470_101935751_101935897_101941918
ES_00013402	chr12	-	335	4	NNC	ENSMUSG00000113902.2	novel	511	3	NA	NA	220	104634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	855.48050175845	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGAGAGCCTGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	101941966	101829714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_101829745_101934354_101934470_101935751_101935894_101941918
ES_00013403	chr12	-	274	2	Intergenic	novelGene_977	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	88	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAGAAACTCTCAAAGAA	NA	False	NA	NA	False	NA	NA	NA	102706367	102704187	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_102704327_102706232
ES_00013404	chr12	-	707	1	FSM	ENSMUSG00000114106.2	ENSMUST00000221771.2	390	1	-438	121	-438	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGACACTGATGTGGCCAA	NA	False	NA	NA	False	NA	NA	NA	102731409	102730702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102730700_102731400
ES_00013405	chr12	-	8158	12	FSM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	0	-1	0	1	multi-exon	TRUE	canonical	3	7	junction_10	26.1040511722473	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGAGTTGGACATAGTCT	NA	False	NA	-11	True	AATAAA	-16	NA	102844665	102747054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876_102804957_102806358_102806547_102807297_102807451_102844474
ES_00013407	chr12	-	928	1	FSM	ENSMUSG00000114184.2	ENSMUST00000222811.2	859	1	-22	-47	-22	47	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	6481	False	NA	NA	False	AATAAA	-23	NA	102833770	102832842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_102832800_102833800
ES_00013408	chr12	-	2278	8	FSM	ENSMUSG00000021200.15	ENSMUST00000149431.2	2283	8	9	-4	9	0	multi-exon	FALSE	canonical	1	1	junction_3	14.9611742418126	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCCCTGTGATTCCTG	NA	False	NA	-2	True	AATAAA	-15	NA	103304623	103287400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103287934_103290021_103290176_103291311_103291874_103296603_103296776_103299550_103299797_103301107_103301264_103302068_103302236_103304335
ES_00013409	chr12	-	1325	1	FSM	ENSMUSG00000041645.15	ENSMUST00000222715.2	1646	1	-53	374	-53	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAATAAACTCCGTACCT	5367	False	NA	NA	False	NA	NA	NA	103377224	103375899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103375900_103377200
ES_00013410	chr12	-	2646	8	FSM	ENSMUSG00000041645.15	ENSMUST00000221211.2	2669	8	0	23	0	-23	multi-exon	FALSE	canonical	3	750	junction_7	42.8480942828671	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAATAAACTCCGTACCT	NA	False	NA	NA	False	NA	NA	NA	103392083	103375899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
ES_00013411	chr12	-	238	2	ISM	ENSMUSG00000091553.2	ENSMUST00000165968.2	1228	4	2501	33	2501	-33	3prime_fragment	FALSE	canonical	3	9	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCATGGCCAAAGTTAC	NA	False	NA	NA	False	CATAAA	-14	NA	104156684	104155808	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_104155971_104156608
ES_00013412	chr12	-	649	3	FSM	ENSMUSG00000041415.12	ENSMUST00000221293.2	6904	3	0	6255	0	3142	multi-exon	FALSE	canonical	3	206	junction_1	16	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTTTACAGTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	104696423	104694270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104694753_104695386_104695522_104696391
ES_00013413	chr12	-	3529	14	FSM	ENSMUSG00000021097.16	ENSMUST00000109937.9	3529	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	16.3518994427135	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTTACTAATGTGTACC	NA	False	NA	NA	False	NA	NA	NA	104831268	104737738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104738223_104739440_104739534_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
ES_00013414	chr12	-	1484	1	FSM	ENSMUSG00000100975.3	ENSMUST00000185486.3	1189	1	-298	3	-298	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGATGCTGTGTGGTTTCG	NA	False	NA	NA	False	AATAAA	-19	NA	104893246	104891762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_104891800_104893200
ES_00013415	chr12	-	1291	6	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	829.202846111855	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188965	105183016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_105183179_105183202_105183317_105183360_105183961_105184481_105184552_105184917_105185089_105188791
ES_00013416	chr12	-	1346	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188996	105183016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_105183317_105183360_105183961_105184481_105184552_105184917_105185089_105188791
ES_00013418	chr12	-	7546	42	FSM	ENSMUSG00000041341.11	ENSMUST00000041055.9	7546	42	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_11	13.111882981186	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTGTATACGTCCATG	NA	False	NA	2	True	AATAAA	-21	NA	105651470	105582394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602812_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630_105611738_105612782_105612864_105613011_105613212_105614571_105614723_105615247_105615421_105615733_105615892_105617639_105617783_105618317_105618514_105618787_105618891_105620267_105620542_105624225_105624415_105624526_105624620_105625096_105625248_105627258_105627521_105628873_105628977_105629065_105629221_105630182_105630369_105630902_105631000_105632855_105633036_105635522_105635686_105636933_105637037_105637734_105637888_105641109_105641273_105650927
ES_00013419	chr12	-	213	1	Intergenic	novelGene_983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTACATTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	105919608	105919395	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_105919400_105919600
ES_00013421	chr12	-	2760	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	0	4	0	0	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108859124	108825959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
ES_00013423	chr12	-	2714	7	FSM	ENSMUSG00000040867.14	ENSMUST00000190647.3	2707	7	0	-7	0	7	multi-exon	FALSE	canonical	2	2	junction_1	3.3870669054836	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGTTTGCATTGTTTCTT	NA	False	NA	1	True	AATAAA	-20	NA	109034143	108998105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_109000278_109001253_109001338_109002921_109003030_109003578_109003646_109004777_109004940_109018759_109018789_109034051
ES_00013424	chr12	-	829	2	FSM	ENSMUSG00000040867.14	ENSMUST00000187230.2	894	2	0	65	0	-65	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCATCTGGCAGAAACAAG	NA	False	NA	NA	False	NA	NA	NA	109003013	109000600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_109001338_109002921
ES_00013425	chr12	-	831	2	Intergenic	novelGene_990	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTTTAAATTATTTCAG	NA	False	NA	NA	False	ATTAAA	-3	NA	109469215	109468073	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_109468782_109469092
ES_00013426	chr12	-	1415	3	ISM	ENSMUSG00000113581.2	ENSMUST00000222401.2	1380	4	204	-6	0	3	3prime_fragment	FALSE	canonical	3	7	junction_2	1.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGTGTGGACTTACTG	NA	False	NA	NA	False	AATAAA	-21	NA	110244402	110241815	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_110242012_110243059_110243861_110243984
ES_00013427	chr12	-	2740	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	0	81292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4156.70037409482	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110662106	110575746	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110575783_110657463_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
ES_00013428	chr12	-	2918	13	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	0	81292	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4979.90122266496	1024	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110662829	110575746	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110575782_110650304_110650330_110657461_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ES_00013429	chr12	-	2918	13	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	0	81292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4979.90122266496	657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110662829	110575746	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110575782_110650304_110650332_110657463_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ES_00013431	chr12	-	1659	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1820	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9492	False	NA	-3	True	AATATA	-18	NA	110805541	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ES_00013432	chr12	-	1505	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_10	69.6330381356436	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7674	False	NA	-3	True	AATATA	-18	NA	110807359	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ES_00013433	chr12	-	1371	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	91.323258264256	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7700	False	NA	-3	True	AATATA	-18	NA	110807333	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774834_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ES_00013434	chr12	-	1613	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	82.2792061738265	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7699	False	NA	-3	True	AATATA	-18	NA	110807334	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774552_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ES_00013435	chr12	-	1664	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	71.6609325657875	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7686	False	NA	-3	True	AATATA	-18	NA	110807347	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780125_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ES_00013436	chr12	-	330	1	FSM	ENSMUSG00000091498.5	ENSMUST00000181662.2	330	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACAAGGACCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	110825328	110824998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110825000_110825300
ES_00013437	chr12	-	774	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221182.2	774	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	143.292242171957	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTTTGTG	3397	False	NA	6	True	NA	NA	NA	110855531	110840081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110855499
ES_00013440	chr12	-	2716	4	NNC	ENSMUSG00000037904.15	novel	1563	4	NA	NA	-27	-13	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	38.9386982604994	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTGGTACGGATCCTTC	NA	False	NA	NA	False	AAAAAG	-9	NA	110945501	110941799	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110943983_110944079_110944205_110944381_110944562_110945273
ES_00013441	chr12	-	201	1	FSM	ENSMUSG00000010529.7	ENSMUST00000010673.7	1215	1	867	147	867	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTCATGTTGGTTTGAAA	7258	False	NA	NA	False	AATATA	-10	NA	111451390	111451189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111451200_111451400
ES_00013442	chr12	-	1471	10	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	0	51832	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3244.42595504625	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTATACTGGCCTACATA	NA	False	NA	NA	False	TTTAAA	-31	NA	111638716	111583962	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_111583989_111627942_111627972_111635794_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ES_00013446	chr12	-	3907	8	NNC	ENSMUSG00000021287.13	novel	2422	8	NA	NA	62	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	30.0183617277214	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780213	111769626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_111770464_111770521_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494
ES_00013447	chr12	-	1270	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221314.2	1662	3	84	308	11	48	multi-exon	FALSE	canonical	2	3	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGAGCCAGGTTTGCACT	NA	False	NA	NA	False	AAGAAA	-43	NA	111910834	111908732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111909646_111910318_111910432_111910590
ES_00013460	chr12	+	216	1	Intergenic	novelGene_816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGCAGTGAAGGCAGG	5930	False	NA	NA	False	NA	NA	NA	3871045	3871261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_3871000_3871300
ES_00013461	chr12	+	215	1	Intergenic	novelGene_828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCAGTGTTATTTCAT	2155	False	NA	NA	False	NA	NA	NA	8702522	8702737	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_8702500_8702700
ES_00013463	chr12	+	227	1	Intergenic	novelGene_830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGACAATTTATAGGAGT	8824	False	NA	NA	False	NA	NA	NA	11275392	11275619	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_11275400_11275600
ES_00013464	chr12	+	224	1	Intergenic	novelGene_832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAGCGTGCCCAGCACTG	NA	False	NA	NA	False	NA	NA	NA	13486031	13486255	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_13486000_13486300
ES_00013466	chr12	+	204	1	Intergenic	novelGene_865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAACGTTTCCGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	23923510	23923714	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23923500_23923700
ES_00013468	chr12	+	518	1	Intergenic	novelGene_869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAACACCACGATTTGTG	NA	False	NA	NA	False	NA	NA	NA	27469150	27469668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_27469200_27469700
ES_00013469	chr12	+	2442	1	Intergenic	novelGene_872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCGCCTATTACCCAGCTC	NA	False	NA	NA	False	NA	NA	NA	27470961	27473403	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_27471000_27473400
ES_00013470	chr12	+	201	1	Intergenic	novelGene_874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTTTTTTAAAAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	31297274	31297475	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_31297300_31297500
ES_00013471	chr12	+	2298	1	Intergenic	novelGene_879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTCACTTGGATGATACAC	NA	False	NA	NA	False	NA	NA	NA	36426056	36428354	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_36426100_36428400
ES_00013472	chr12	+	222	1	Intergenic	novelGene_881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTAAACAGGACAGATCT	3554	False	NA	NA	False	NA	NA	NA	37112221	37112443	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_37112200_37112400
ES_00013473	chr12	+	200	1	Intergenic	novelGene_884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGAACTTGATAGTAAGA	6054	False	NA	NA	False	NA	NA	NA	44335254	44335454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_44335300_44335500
ES_00013474	chr12	+	990	1	Intergenic	novelGene_886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAACAGGGAAAACTGTGTC	NA	False	NA	NA	False	NA	NA	NA	44761169	44762159	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_44761200_44762200
ES_00013475	chr12	+	2002	1	Intergenic	novelGene_888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGCTCCTCACTGCTGA	NA	False	NA	NA	False	NA	NA	NA	44762178	44764180	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_44762200_44764200
ES_00013479	chr12	+	236	1	Intergenic	novelGene_895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTTAACCCTCCGCAC	NA	False	NA	NA	False	NA	NA	NA	54861407	54861643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_54861400_54861600
ES_00013481	chr12	+	205	1	Intergenic	novelGene_897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACAATTCAGATGAACA	NA	False	NA	NA	False	NA	NA	NA	55026506	55026711	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_55026500_55026700
ES_00013482	chr12	+	217	1	Intergenic	novelGene_899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTCTTTTTTTTTATCC	NA	False	NA	NA	False	NA	NA	NA	55663745	55663962	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_55663700_55664000
ES_00013483	chr12	+	233	1	Intergenic	novelGene_901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTGTTGGAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	65392964	65393197	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_65393000_65393200
ES_00013484	chr12	+	205	1	Intergenic	novelGene_902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTAGCTTTTAAAACATA	NA	False	NA	NA	False	NA	NA	NA	68200709	68200914	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_68200700_68200900
ES_00013485	chr12	+	204	1	Intergenic	novelGene_909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTAATTCTAATAGTCT	8549	False	NA	NA	False	NA	NA	NA	70834052	70834256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_70834100_70834300
ES_00013486	chr12	+	216	1	Intergenic	novelGene_910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAGTGGGGATTATGGA	NA	False	NA	NA	False	AAGAAA	-20	NA	70951793	70952009	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_70951800_70952000
ES_00013487	chr12	+	201	1	Intergenic	novelGene_912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGAGGAGTTTGAGAGT	4958	False	NA	NA	False	NA	NA	NA	70979943	70980144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_70979900_70980100
ES_00013488	chr12	+	202	1	Intergenic	novelGene_918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAAACTTTTATATTTATA	8342	False	NA	NA	False	NA	NA	NA	72773598	72773800	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_72773600_72773800
ES_00013489	chr12	+	223	1	Intergenic	novelGene_919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTACGTCTCTGTTCTGC	8283	False	NA	NA	False	NA	NA	NA	73220363	73220586	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_73220400_73220600
ES_00013490	chr12	+	215	1	Intergenic	novelGene_920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTTTTTGAAGGCACT	NA	False	NA	NA	False	NA	NA	NA	73308738	73308953	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_73308700_73309000
ES_00013491	chr12	+	262	1	Intergenic	novelGene_921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGCGAGCAGCGGGCCCC	8811	False	NA	NA	False	NA	NA	NA	73955130	73955392	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_73955100_73955400
ES_00013492	chr12	+	222	1	Intergenic	novelGene_925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTACAAAAAAAAAACAAAA	1374	False	NA	NA	False	AATAGA	-5	NA	76499351	76499573	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_76499400_76499600
ES_00013493	chr12	+	232	1	Intergenic	novelGene_928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGACATCATTCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	78852403	78852635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_78852400_78852600
ES_00013494	chr12	+	201	1	Intergenic	novelGene_929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCCAAACCAAAACCCAAAA	8011	False	NA	NA	False	NA	NA	NA	79335255	79335456	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_79335300_79335500
ES_00013497	chr12	+	222	1	Intergenic	novelGene_947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACACAGTCTTATGCGG	NA	False	NA	NA	False	NA	NA	NA	83890630	83890852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_83890600_83890900
ES_00013498	chr12	+	465	1	Intergenic	novelGene_951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTCTGTATCTTATTCC	NA	False	NA	NA	False	NA	NA	NA	84450937	84451402	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_84450900_84451400
ES_00013499	chr12	+	2323	1	Intergenic	novelGene_960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTGATTTTCTTTGG	5740	False	NA	16	True	AATAAA	-45	NA	86740139	86742462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_86740100_86742500
ES_00013500	chr12	+	217	1	Intergenic	novelGene_964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTGTGGTTTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	88306976	88307193	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_88307000_88307200
ES_00013501	chr12	+	235	1	Intergenic	novelGene_968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATACATCTCTTATCTTCT	NA	False	NA	NA	False	NA	NA	NA	96224571	96224806	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_96224600_96224800
ES_00013502	chr12	+	205	1	Intergenic	novelGene_981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCCAGGAGAAAATTCTTA	NA	False	NA	NA	False	NA	NA	NA	105645496	105645701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_105645500_105645700
ES_00013503	chr12	+	217	1	Intergenic	novelGene_985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTCTTTCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	106102185	106102402	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_106102200_106102400
ES_00013505	chr12	+	5093	5	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-509	6824	-98	1710	intron_retention	FALSE	canonical	3	40	junction_4	60.7345659406569	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACAAGACTGTTTCATT	NA	False	NA	NA	False	ATTAAA	-17	NA	3285405	3293120	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833
ES_00013506	chr12	+	4123	12	NNC	ENSMUSG00000037486.19	novel	1483	12	NA	NA	213	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	30.173328488354	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTAGTTTTTGATGAAT	NA	False	NA	NA	False	NA	NA	NA	3477124	3556852	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_3477213_3492473_3492557_3501658_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3547060_3554746
ES_00013511	chr12	+	4363	23	NIC	ENSMUSG00000020661.16	novel	2613	19	NA	NA	39	628	intron_retention	FALSE	canonical	2	4	junction_1	39.0183258490945	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTTTTAAGATTTTCT	162	False	NA	NA	False	NA	NA	NA	3856565	3959175	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_3856603_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ES_00013514	chr12	+	2178	4	FSM	ENSMUSG00000051721.7	ENSMUST00000220215.2	2202	4	24	0	-1	0	multi-exon	FALSE	canonical	2	4	junction_3	5.90668171555645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGGATTTATTCATT	NA	False	NA	NA	False	NA	NA	NA	4893326	4906967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4906845
ES_00013515	chr12	+	8066	29	NNC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	22	2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_15	43.4034672507595	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTTCTTTAGCATGATT	NA	False	NA	9	True	AATAAA	-17	NA	4967428	5097396	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5020405_5020469_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5064000_5067982_5068143_5074581_5074705_5077042_5077181_5081492_5082177_5084032_5084161_5084467_5084597_5094005
ES_00013516	chr12	+	8014	28	NNC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	26	20	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	33.7104999252847	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTATTGTTGGCTTC	NA	False	NA	27	True	AATAAA	-35	NA	4967432	5097414	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_4967922_4987389_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5064000_5067982_5068143_5074581_5074705_5077042_5077181_5081492_5082177_5084032_5084161_5084467_5084597_5094005
ES_00013518	chr12	+	5864	20	FSM	ENSMUSG00000020594.15	ENSMUST00000178015.8	5874	20	2	8	2	-8	multi-exon	TRUE	canonical	2	7	junction_1	43.0869121017025	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTCAAGAGTGCCTGA	NA	False	NA	30	True	AATAAA	-42	NA	8724135	8802573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_8724171_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ES_00013519	chr12	+	5967	20	NNC	ENSMUSG00000020594.15	novel	6311	21	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_11	43.4545644204964	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTATATCTCTGTC	NA	False	NA	18	True	AATAAA	-30	NA	8724327	8802561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778858_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ES_00013520	chr12	+	6099	21	NIC	ENSMUSG00000020594.15	novel	6311	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_7	40.619299600067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTATATCTCTGTC	NA	False	NA	18	True	AATAAA	-30	NA	8724420	8802561	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8769002_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ES_00013521	chr12	+	5999	21	NNC	ENSMUSG00000020594.15	novel	6218	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	54.42175575999	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTATATCTCTGTC	NA	False	NA	18	True	AATAAA	-30	NA	8724420	8802561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_8724481_8748090_8748160_8749063_8749189_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778858_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ES_00013523	chr12	+	7858	33	NNC	ENSMUSG00000020580.11	novel	7644	33	NA	NA	-63	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	57.2494456168573	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTTTTCCTGTGAAATA	1972	False	NA	14	True	AATAAA	-21	NA	16944832	17037819	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_16945332_16976939_16977022_16978934_16979036_16985151_16985320_16990403_16990542_16992694_16992956_16998458_16998604_17000572_17000712_17002496_17002589_17003261_17003422_17004907_17004969_17007226_17007307_17007461_17007511_17008119_17008256_17008340_17008433_17008628_17008876_17009402_17009510_17011616_17011777_17015011_17015173_17015468_17015654_17016624_17016695_17018211_17018316_17018580_17018768_17021049_17021144_17021225_17021321_17022661_17022842_17022981_17023151_17024842_17024914_17025470_17025560_17026034_17026114_17027542_17027805_17027889_17028104_17034638
ES_00013525	chr12	+	306	4	Intergenic	novelGene_835	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_3	7.58653778449403	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGCCTCCACTTGGC	NA	False	NA	NA	False	NA	NA	NA	17854426	17881529	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_17854483_17864918_17865046_17865245_17865307_17881467
ES_00013526	chr12	+	2116	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10179	-507	intron_retention	FALSE	canonical	3	10	junction_1	60.256857608814	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAATTCTA	NA	False	NA	3	True	NA	NA	NA	17942210	17954169	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_17942310_17950611_17950788_17950987_17951049_17952389
ES_00013527	chr12	+	2380	6	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-300	18673	multi-exon	TRUE	canonical	0	0	junction_4	17.9376698598229	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATACTGGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	18437455	18456752	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_18437954_18452998_18453126_18453327_18453389_18454722_18455376_18455543_18455829_18455996
ES_00013529	chr12	+	2091	4	FSM	ENSMUSG00000073197.10	ENSMUST00000063216.6	2431	4	0	340	0	-340	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTAATCCTAGCTCTCG	NA	False	NA	NA	False	NA	NA	NA	18564546	18584912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_18564865_18581610_18581738_18581935_18581997_18583327
ES_00013530	chr12	+	4139	4	Genic_Genomic	ENSMUSG00000116815.2_ENSMUSG00000113724.2	novel	1785	1	NA	NA	-316	1711	multi-exon	FALSE	canonical	0	0	junction_2	12.9700509722291	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGTTGTTGTTGCAG	NA	False	NA	NA	False	AATAAA	-23	NA	18660068	18701710	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_18660512_18696480_18696608_18696807_18696869_18698202
ES_00013532	chr12	+	3559	5	NNC	ENSMUSG00000113778.2	novel	759	2	NA	NA	-258	-30885	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	13.6816482925121	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	18903582	18925619	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_18903999_18920412_18920540_18920741_18920803_18922243_18922735_18923155
ES_00013533	chr12	+	3659	4	Intergenic	novelGene_839	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	13.4742552876052	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	18914171	18925619	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_18914267_18920412_18920540_18920741_18920803_18922243
ES_00013534	chr12	+	568	4	NNC	ENSMUSG00000114188.2	novel	603	4	NA	NA	-209	19966	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.8499946271217	42	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCATGTCCCAGTCAT	NA	False	NA	NA	False	NA	NA	NA	19094497	19125146	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_19094822_19123371_19123499_19123700_19123762_19125090
ES_00013536	chr12	+	397	1	FSM	ENSMUSG00000113110.2	ENSMUST00000221548.2	494	1	-22	119	-22	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACCTGCACTTGACAGGG	NA	False	NA	NA	False	NA	NA	NA	19268060	19268457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_19268100_19268500
ES_00013537	chr12	+	4180	4	NNC	ENSMUSG00000093908.3	novel	2016	2	NA	NA	-41	19407	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	5.55777733351102	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	19437768	19459694	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_19438215_19454315_19454443_19454644_19454706_19456148
ES_00013539	chr12	+	3927	7	Fusion	ENSMUSG00000114140.2_ENSMUSG00000059229.8	novel	580	3	NA	NA	7	482	intron_retention	FALSE	canonical	2	6	junction_4	18.4842275106824	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAAAGTGAGGTCTAGC	NA	False	NA	NA	False	AATATA	-8	NA	19540539	19613577	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_19540659_19547562_19547690_19547891_19547953_19575969_19576845_19577748_19577855_19603995_19606054_19612996
ES_00013540	chr12	+	679	4	Fusion	ENSMUSG00000113714.2_ENSMUSG00000113957.2	novel	232	2	NA	NA	-229	-272	multi-exon	FALSE	non_canonical	0	0	junction_3	20.704266871026	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCCACCTGACCGTGGA	NA	False	NA	NA	False	NA	NA	NA	19656700	19708163	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_19657056_19674223_19674351_19674551_19674614_19708028
ES_00013542	chr12	+	4308	5	Genic_Genomic	ENSMUSG00000095470.2	novel	336	1	NA	NA	-228	24544	multi-exon	TRUE	non_canonical	0	0	junction_1	2.5	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	20004277	20029385	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_20004632_20023640_20023768_20023969_20024031_20025367_20025826_20026077
ES_00013543	chr12	+	1450	5	Fusion	ENSMUSG00000113901.2_ENSMUSG00000113039.2	novel	580	3	NA	NA	-247	-31913	multi-exon	FALSE	canonical	2	6	junction_4	13.8811923119017	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCCTTCGTGATGAAGA	NA	False	NA	NA	False	NA	NA	NA	20121635	20162933	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_20122009_20132442_20132570_20132771_20132833_20161140_20162016_20162919
ES_00013544	chr12	+	1421	4	Fusion	ENSMUSG00000116606.2_ENSMUSG00000112951.3	novel	654	4	NA	NA	-284	26645	multi-exon	FALSE	canonical	0	0	junction_3	60.8331050224026	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAATAATCAAATAAACC	NA	False	NA	NA	False	NA	NA	NA	20465653	20512063	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_20466065_20483306_20483434_20483635_20483697_20511241
ES_00013545	chr12	+	3938	2	Fusion	ENSMUSG00000112951.3_ENSMUSG00000116537.2	novel	739	2	NA	NA	-284	2869	multi-exon	FALSE	canonical	3	27	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	20465653	20512081	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_+_20466065_20508554
ES_00013546	chr12	+	4021	4	NNC	ENSMUSG00000116627.2	novel	1230	4	NA	NA	-82	-21985	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	34.7019051670398	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	2	True	AATAAA	-14	NA	21040454	21068444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_21040874_21062987_21063115_21063316_21063378_21065030
ES_00013547	chr12	+	221	1	FSM	ENSMUSG00000116819.2	ENSMUST00000232122.2	432	1	-15	226	-15	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGGGATGGGGGCGT	5871	False	NA	NA	False	NA	NA	NA	21423750	21423971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21423800_21424000
ES_00013548	chr12	+	876	1	FSM	ENSMUSG00000097055.3	ENSMUST00000227598.2	306	1	-571	1	-571	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTCTCTCCTATTTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	21470188	21471064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_21470200_21471100
ES_00013549	chr12	+	205	1	Intergenic	novelGene_845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGATCCTTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	21525278	21525483	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_21525300_21525500
ES_00013550	chr12	+	201	1	FSM	ENSMUSG00000113242.2	ENSMUST00000221456.2	181	1	-38	18	-38	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCACCACAGCCACACTT	NA	False	NA	NA	False	NA	NA	NA	22608983	22609184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_22609000_22609200
ES_00013551	chr12	+	326	2	Intergenic	novelGene_862	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCTGACCACACCCTGA	NA	False	NA	NA	False	NA	NA	NA	23881804	23916566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23881982_23916417
ES_00013552	chr12	+	1975	15	NNC	ENSMUSG00000059669.9	novel	2209	15	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	69.0126060652571	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548588	24608538	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_24548646_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ES_00013553	chr12	+	3373	15	NIC	ENSMUSG00000020656.17	novel	3469	16	NA	NA	12	-3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	6.88869230207396	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAAGGTGTCGGCTCCTG	NA	False	NA	NA	False	TTTAAA	-30	NA	24622297	24667384	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_24622458_24625912_24626100_24628018_24628090_24631326_24631718_24634303_24634461_24634832_24634945_24636054_24636150_24652906_24653066_24658027_24658080_24658431_24658572_24659702_24659741_24661821_24661914_24662153_24662240_24664393_24664459_24665816
ES_00013554	chr12	+	7070	30	NNC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	7	-809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	11.3392188210677	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCAAAACACACAACACAAA	NA	False	NA	NA	False	NA	NA	NA	25024934	25112334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580_25109469_25112311
ES_00013555	chr12	+	238	2	FSM	ENSMUSG00000113616.2	ENSMUST00000223144.2	389	2	0	151	0	-151	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGTGCTTGTATCACT	NA	False	NA	NA	False	NA	NA	NA	28030595	28032082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_28030692_28031940
ES_00013556	chr12	+	1719	1	FSM	ENSMUSG00000112546.2	ENSMUST00000217973.2	1607	1	-39	-73	-39	73	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCAAAGTGTGGCGCTGG	NA	False	NA	NA	False	NA	NA	NA	31068177	31069896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_31068200_31069900
ES_00013557	chr12	+	231	1	FSM	ENSMUSG00000112518.2	ENSMUST00000218421.2	305	1	-45	119	-45	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCACTCAAGTTCATC	NA	False	NA	NA	False	NA	NA	NA	31284525	31284756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_31284500_31284800
ES_00013558	chr12	+	405	2	FSM	ENSMUSG00000020561.9	ENSMUST00000219769.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGAATTTGATGTATTTC	NA	False	NA	NA	False	NA	NA	NA	33479633	33487065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_33479908_33486934
ES_00013559	chr12	+	6206	26	NNC	ENSMUSG00000020590.17	novel	6231	26	NA	NA	3	-1	at_least_one_novel_splicesite	TRUE	canonical	2	8	junction_4	19.9195983895258	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGATGTGTTTACTTGGC	NA	False	NA	NA	False	AATAAA	-15	NA	35097218	35197477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136038_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
ES_00013560	chr12	+	3084	4	ISM	ENSMUSG00000004151.18	ENSMUST00000161591.2	670	6	16763	-2575	16763	88	3prime_fragment	FALSE	canonical	2	12	junction_1	3.55902608401044	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCCTTCCTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	38904159	38918290	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_38904228_38906939_38907110_38911285_38911388_38915546
ES_00013561	chr12	+	412	1	FSM	ENSMUSG00000035954.11	ENSMUST00000223290.2	2086	1	-30	1704	0	-1704	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAATGCCAGGTCTTGGC	NA	False	NA	NA	False	NA	NA	NA	40496051	40496463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_40496100_40496500
ES_00013562	chr12	+	3771	32	FSM	ENSMUSG00000035954.11	ENSMUST00000222287.2	3880	32	14	95	0	-95	multi-exon	FALSE	canonical	2	5	junction_26	3.72325705265227	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACCACAGTAGACGAGAG	NA	False	NA	NA	False	NA	NA	NA	40496051	40840225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_40496394_40671219_40671304_40673801_40673843_40676335_40676392_40681520_40681618_40686081_40686231_40690359_40690445_40699336_40699489_40718404_40718487_40719006_40719068_40722739_40722873_40726700_40726790_40742912_40743039_40752859_40752985_40754329_40754493_40760793_40760901_40775645_40775803_40779847_40779946_40780042_40780127_40780286_40780388_40781823_40781906_40783176_40783348_40787366_40787560_40795657_40795786_40797978_40798114_40805765_40805865_40816237_40816333_40827188_40827265_40829121_40829223_40829644_40829704_40838226_40838376_40840074
ES_00013563	chr12	+	643	1	FSM	ENSMUSG00000112795.2	ENSMUST00000217877.2	1629	1	467	519	467	-519	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGATGAGAAAGAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	44268994	44269637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_44269000_44269600
ES_00013564	chr12	+	736	6	FSM	ENSMUSG00000020598.17	ENSMUST00000220126.2	736	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.67332005306815	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGTAAGTCTAAATGCT	NA	False	NA	NA	False	NA	NA	NA	44375844	44587852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_44375880_44503407_44503486_44579240_44579443_44584033_44584140_44586223_44586421_44587734
ES_00013565	chr12	+	9426	7	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-35	-1	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	115.531741670129	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATCCAAGTCTTTTTAAT	NA	False	NA	NA	False	AATACA	-11	NA	52550719	52618757	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_52550832_52562861_52566751_52589274_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ES_00013568	chr12	+	1094	3	ISM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	11030	2510	11030	-2510	3prime_fragment	FALSE	canonical	3	88	junction_2	10.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55257406	55261443	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_55257584_55258966_55259065_55260624
ES_00013569	chr12	+	1009	1	Genic_Genomic	ENSMUSG00000046747.9	novel	NA	NA	NA	NA	-448	-409	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTGGCGAACGGTCCCCG	NA	False	NA	NA	False	NA	NA	NA	55866947	55867956	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_55866900_55868000
ES_00013579	chr12	+	5602	17	ISM	ENSMUSG00000055884.9	ENSMUST00000222540.2	7816	23	18132	882	0	610	3prime_fragment	FALSE	canonical	3	18	junction_5	33.6950942274985	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTCTGGCCACCACAC	NA	False	NA	NA	False	NA	NA	NA	65140511	65177950	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148293_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
ES_00013581	chr12	+	1885	4	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	4	junction_1	95.4020731197994	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771766	69791434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_69772329_69787672_69787882_69788418_69788591_69790492
ES_00013582	chr12	+	4932	14	NIC	ENSMUSG00000048285.10	novel	2721	12	NA	NA	91	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	44.4026759681902	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	1053	False	NA	NA	False	AATAAA	-21	NA	70872553	70949008	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_70872908_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
ES_00013586	chr12	+	1250	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	57	junction_1	210.520928233964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132630	72147631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_72132649_72132686_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ES_00013587	chr12	+	368	2	Antisense	novelGene_ENSMUSG00000021094.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACATCACAG	NA	False	NA	NA	False	NA	NA	NA	72695249	72708548	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_72695538_72708468
ES_00013588	chr12	+	3852	4	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23141	78	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	192.101246453241	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATCCTTGCTTTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	72781087	72836252	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_72781169_72782668_72782779_72830456_72831311_72833445
ES_00013589	chr12	+	2559	7	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23141	376	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	166.029113912791	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCTGTTGGCCTTTAAA	NA	False	NA	8	True	AATAAA	-16	NA	72781087	72841714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_72781169_72782668_72782779_72830456_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
ES_00013591	chr12	+	4640	15	NNC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	87	0	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_1	100.579545127025	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8445	False	NA	11	True	AATAAA	-22	NA	73954764	73994304	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_73955099_73973327_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ES_00013592	chr12	+	5789	31	FSM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.59890342966229	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8481	False	NA	NA	False	AAGAAA	-43	NA	76095351	76157674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76095428_76098872_76099044_76099500_76099632_76101542_76101748_76103536_76103717_76104250_76104380_76106205_76106361_76106455_76106601_76106924_76107020_76108361_76108597_76110866_76111062_76113286_76113413_76118901_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ES_00013594	chr12	+	6662	2	FSM	ENSMUSG00000021057.16	ENSMUST00000154078.3	6685	2	22	1	8	-1	multi-exon	FALSE	canonical	1	1	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTGTCTTTAAAACTG	553	False	NA	NA	False	AATAAA	-22	NA	76371686	76380924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76371764_76374339
ES_00013595	chr12	+	277	1	FSM	ENSMUSG00000052221.9	ENSMUST00000219251.2	768	1	430	61	430	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCCAAGTAAGTATGGAAA	NA	False	NA	NA	False	NA	NA	NA	76482916	76483193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_76482900_76483200
ES_00013596	chr12	+	2980	13	FSM	ENSMUSG00000021065.17	ENSMUST00000177595.9	2980	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	37.3482113211448	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTGTGAAGTTTCTG	NA	False	NA	9	True	AATAAA	-10	NA	77284898	77522759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_77284974_77324134_77324230_77325717_77325807_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ES_00013597	chr12	+	3302	11	NIC	ENSMUSG00000021065.17	novel	3358	12	NA	NA	-138	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	26.8158535198863	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTGTGAAGTTTCTG	NA	False	NA	9	True	AATAAA	-10	NA	77285448	77522759	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_77286028_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ES_00013598	chr12	+	1517	11	NNC	ENSMUSG00000047454.13	novel	3300	23	NA	NA	134	-108348	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	23.5008510484195	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCTAAGAATTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	78273286	78622519	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78622282
ES_00013599	chr12	+	5149	15	NIC	ENSMUSG00000021112.10	novel	5470	15	NA	NA	28	6	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	41.9492526264577	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGACACTTTCTTATGT	NA	False	NA	22	True	AATAAA	-31	NA	78795727	78887366	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_78795881_78841018_78841108_78843876_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ES_00013600	chr12	+	1557	11	NIC	ENSMUSG00000059060.16	novel	1858	11	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_10	14.8811961884789	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGGGTCTCCAAAGAGTAA	8684	False	NA	7	True	AATAAA	-40	NA	79344095	79861152	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_79344158_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374179_79704597_79704695_79813844_79813949_79849963_79850043_79860715
ES_00013601	chr12	+	660	2	Genic_Genomic	ENSMUSG00000112278.2	novel	728	1	NA	NA	-106	1	multi-exon	FALSE	canonical	3	10	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGGTCTTTTTTTATATA	1597	False	NA	NA	False	ATTAAA	-15	NA	80481876	80482711	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_+_80482083_80482257
ES_00013602	chr12	+	2674	1	FSM	ENSMUSG00000048833.10	ENSMUST00000217679.2	2674	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCGAGAGTTAAGAAAGGT	NA	False	NA	NA	False	NA	NA	NA	80718318	80720992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80718300_80721000
ES_00013603	chr12	+	849	1	FSM	ENSMUSG00000021133.10	ENSMUST00000219720.2	2662	1	154	1659	154	-1659	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTGCTCTAGCAAAATAC	NA	False	NA	NA	False	NA	NA	NA	80915635	80916484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_80915600_80916500
ES_00013604	chr12	+	3196	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7386	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	44.458470009162	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066195	81233188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_81066280_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ES_00013605	chr12	+	6453	26	NNC	ENSMUSG00000042700.17	novel	6179	24	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	46.7877932798716	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATGTCTTTATTTTTT	NA	False	NA	21	True	NA	NA	NA	82216161	82497048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_82216278_82216789_82216851_82281236_82281303_82312730_82312800_82358122_82358184_82359485_82359647_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ES_00013606	chr12	+	1972	14	NNC	ENSMUSG00000021222.10	novel	2008	14	NA	NA	-60	74	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	89.1623743183348	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGTACTTCTTTGCCTA	NA	False	NA	19	True	AATAAA	-32	NA	83567347	83588768	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580644_83580785_83581633_83581684_83582673_83582754_83584489_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ES_00013608	chr12	+	2448	3	ISM	ENSMUSG00000021228.16	ENSMUST00000021653.8	3431	4	1516	12	571	-12	3prime_fragment	FALSE	canonical	2	7	junction_1	2	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATGGTTAACATGTCTTGT	NA	False	NA	NA	False	AATAAA	-8	NA	84100440	84107164	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_84100716_84103682_84103886_84105194
ES_00013609	chr12	+	3315	3	FSM	ENSMUSG00000043487.5	ENSMUST00000056822.4	3388	3	73	0	73	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTTATTGCTGCTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	84147500	84158123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_84148203_84153216_84153420_84155713
ES_00013610	chr12	+	2911	1	ISM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	26238	3	4938	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTCCTTTGGTTACT	NA	False	NA	NA	False	AATAAA	-21	NA	84187377	84190288	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_84187400_84190300
ES_00013611	chr12	+	220	2	Antisense	novelGene_ENSMUSG00000042962.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTAATAATGTACTTGG	NA	False	NA	NA	False	NA	NA	NA	84278347	84326956	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_84278383_84326771
ES_00013614	chr12	+	2227	7	NNC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	-191	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	65.088188039169	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCCAGGTTTTCCTTG	NA	False	NA	5	True	AATAAA	-16	NA	84498004	84578347	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_84498044_84498231_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509181_84576463
ES_00013615	chr12	+	2098	6	FSM	ENSMUSG00000004789.11	ENSMUST00000223413.2	2152	6	54	0	54	0	multi-exon	FALSE	canonical	2	7	junction_1	138.62265327139	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGGGATCTGTGCTCCT	NA	False	NA	22	True	ATTAAA	-22	NA	85172688	85180864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85172858_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
ES_00013616	chr12	+	416	2	Intergenic	novelGene_957	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGATCAGAATGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	85571441	85572144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_85571668_85571954
ES_00013617	chr12	+	908	3	FSM	ENSMUSG00000034266.7	ENSMUST00000040536.6	955	3	47	0	47	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGAAAGCGGCTTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	85733489	85755861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_85733748_85736041_85736147_85755316
ES_00013619	chr12	+	278	1	FSM	ENSMUSG00000091942.2	ENSMUST00000165702.2	459	1	35	146	35	-146	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTACGTGGCATCTTC	NA	False	NA	NA	False	NA	NA	NA	86761794	86762072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_86761800_86762100
ES_00013620	chr12	+	1942	10	NNC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	152.42338694862	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87193941	87211497	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_87194283_87194546_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ES_00013622	chr12	+	335	4	FSM	ENSMUSG00000021040.16	ENSMUST00000077462.8	335	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	1742.05708542771	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGAGACTTTTTCTACA	NA	False	NA	16	True	AATAAA	-3	NA	87490705	87496674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87490797_87494333_87494369_87496062_87496171_87496573
ES_00013623	chr12	+	1644	1	FSM	ENSMUSG00000112949.2	ENSMUST00000221137.2	2773	1	1154	-25	1154	25	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCCCTTCTTCCAACCC	NA	False	NA	NA	False	NA	NA	NA	87749066	87750710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87749100_87750700
ES_00013624	chr12	+	210	1	FSM	ENSMUSG00000113481.2	ENSMUST00000222056.2	213	1	16	-13	16	13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTTTCCAAGTTCTCT	NA	False	NA	NA	False	CATAAA	-8	NA	87946797	87947007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_87946800_87947000
ES_00013625	chr12	+	285	1	FSM	ENSMUSG00000114075.2	ENSMUST00000222340.2	435	1	93	57	93	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAATCGTGTTTGATGA	NA	False	NA	NA	False	AATGAA	-28	NA	88050559	88050844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_88050600_88050800
ES_00013626	chr12	+	254	1	FSM	ENSMUSG00000071207.5	ENSMUST00000076538.7	843	1	-98	687	-98	-687	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGGTCTTTGTCATCTT	NA	False	NA	NA	False	NA	NA	NA	88055805	88056059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_88055800_88056100
ES_00013627	chr12	+	983	8	FSM	ENSMUSG00000021012.17	ENSMUST00000221532.2	983	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_5	532.218115483661	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTGTTTAATATCAT	NA	False	NA	23	True	ATTAAA	-20	NA	98726632	98753106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_98726670_98730081_98730238_98740503_98740579_98749840_98749962_98751174_98751312_98751588_98751666_98751893_98752001_98752833
ES_00013629	chr12	+	1579	2	FSM	ENSMUSG00000097121.3	ENSMUST00000180800.2	2431	2	253	599	253	145	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCGGCGATAACTTTTT	NA	False	NA	NA	False	NA	NA	NA	101048992	101054587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_101050285_101054300
ES_00013630	chr12	+	985	2	NNC	ENSMUSG00000021102.5	novel	2925	2	NA	NA	-61	165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTAGCTGCTTTTCTT	6297	False	NA	17	True	ATTAAA	-29	NA	104998885	105007163	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_104999238_105006530
ES_00013632	chr12	+	1170	9	FSM	ENSMUSG00000021111.16	ENSMUST00000163805.2	1170	9	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_8	273.366512213914	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTATATTTTTTTATT	4491	False	NA	NA	False	AATAAA	-14	NA	105765943	105777671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295
ES_00013633	chr12	+	215	1	Intergenic	novelGene_984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAATTATAAATCCACTG	NA	False	NA	NA	False	NA	NA	NA	105919395	105919610	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_105919400_105919600
ES_00013634	chr12	+	2514	11	NIC	ENSMUSG00000021258.11	novel	2789	12	NA	NA	84	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	19.4483932498291	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTATGTGTGAGTACAG	NA	False	NA	24	True	AATAAA	-17	NA	108146080	108169616	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_108146140_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
ES_00013635	chr12	+	3923	22	FSM	ENSMUSG00000058070.15	ENSMUST00000109860.8	4160	22	237	0	-25	0	multi-exon	TRUE	canonical	1	1	junction_11	3.09120616516523	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTATTGACCTACGTT	NA	False	NA	NA	False	AATAAA	-14	NA	108389311	108505823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108389521_108429785_108429969_108438111_108438245_108454547_108454680_108468648_108468678_108472737_108472868_108475344_108475495_108476435_108476506_108478079_108478191_108479233_108479330_108480636_108480772_108481374_108481475_108482718_108482874_108487574_108487701_108487906_108488039_108493955_108494024_108496562_108496652_108500912_108501011_108501123_108501212_108502485_108502582_108503592_108503724_108504361
ES_00013636	chr12	+	208	2	Intergenic	novelGene_987	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	98	junction_1	0	1227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTGTGTGTGTATGTG	NA	False	NA	NA	False	AAAAAG	-8	NA	108507148	108562199	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_108507200_108562042
ES_00013637	chr12	+	2121	13	FSM	ENSMUSG00000021262.16	ENSMUST00000077735.13	2121	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	48.559814204294	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	NA	False	NA	17	True	AATAAA	-17	NA	108520978	108654775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108521473_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108652308_108652376_108652666_108652725_108654287
ES_00013638	chr12	+	569	3	FSM	ENSMUSG00000021262.16	ENSMUST00000223548.2	569	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	98.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	3951	False	NA	17	True	AATAAA	-17	NA	108652355	108654775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_108652376_108652663_108652725_108654287
ES_00013640	chr12	+	223	2	Antisense	novelGene_ENSMUSG00000114102.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	71	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGAGCTGCCATGTGG	2031	False	NA	NA	False	NA	NA	NA	108679820	108719207	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_+_108679879_108719042
ES_00013644	chr12	+	2786	7	ISM	ENSMUSG00000040877.17	ENSMUST00000047115.9	4356	8	2574	-2	2574	2	3prime_fragment	FALSE	canonical	3	8	junction_1	21.3203085239298	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGTGGTCATGGTGTT	7469	False	NA	NA	False	NA	NA	NA	108862816	108994380	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ES_00013645	chr12	+	1634	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-5146	2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	28.3313724811677	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGTGGTCATGGTGTT	NA	False	NA	NA	False	NA	NA	NA	108981581	108994380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_108981695_108990888_108991060_108992335_108992477_108993171
ES_00013646	chr12	+	1129	6	FSM	ENSMUSG00000040856.18	ENSMUST00000109842.9	1129	6	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_5	10.3460137251021	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCCTTCACCCCACC	NA	False	NA	NA	False	NA	NA	NA	109419416	109426307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532_109425819_109426037
ES_00013647	chr12	+	1682	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	135.363757848161	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506895	109538156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00013648	chr12	+	1225	7	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-157	0	combination_of_known_splicesites	FALSE	canonical	3	42	junction_2	155.713411967841	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109510223	109538156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109510626_109510830_109510925_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ES_00013650	chr12	+	2909	4	NNC	ENSMUSG00000021268.18	novel	706	5	NA	NA	1352	0	intron_retention	FALSE	canonical	3	8	junction_1	192.811364349258	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109513679	109538156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_+_109516015_109516087_109516246_109524670_109524755_109537824
ES_00013651	chr12	+	2615	3	NIC	ENSMUSG00000021268.18	novel	706	5	NA	NA	-1545	0	intron_retention	FALSE	canonical	3	415	junction_1	2	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109514046	109538156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_109516246_109524670_109524755_109537824
ES_00013652	chr12	+	872	4	ISM	ENSMUSG00000021268.18	ENSMUST00000143847.8	706	5	3362	0	0	0	3prime_fragment	FALSE	canonical	3	352	junction_1	30.6847772609735	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109515689	109538156	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_109515988_109516087_109516246_109524670_109524755_109537824
ES_00013653	chr12	+	2619	1	FSM	ENSMUSG00002076155.1	ENSMUST00020183598.1	73	1	-1011	-1535	-1011	1535	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACATTATTTAAAATAAAA	613	False	NA	NA	False	NA	NA	NA	109601434	109604053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109601400_109604100
ES_00013654	chr12	+	2364	3	FSM	ENSMUSG00000097451.12	ENSMUST00000238689.2	2364	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	9	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCTTTTCTTACTATG	389	False	NA	NA	False	NA	NA	NA	109609264	109613943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109609896_109611695_109611766_109612280
ES_00013656	chr12	+	5018	2	FSM	ENSMUSG00000097451.12	ENSMUST00000180876.4	8080	2	0	3062	0	-290	multi-exon	FALSE	canonical	3	671	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATAGCCAACGTTCT	2897	False	NA	NA	False	CATAAA	-34	NA	109612595	109618372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109617534_109618292
ES_00013657	chr12	+	1690	1	FSM	ENSMUSG00000102657.2	ENSMUST00000193116.2	8717	1	-1376	8403	-1376	-8403	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAATAAAATGACTA	716	False	NA	NA	False	NA	NA	NA	109633926	109635616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109633900_109635600
ES_00013658	chr12	+	318	1	FSM	ENSMUSG00000102657.2	ENSMUST00000193116.2	8717	1	3336	5063	3336	-5063	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGTGCTCTAAGAATAT	2125	False	NA	NA	False	TTTAAA	-26	NA	109638638	109638956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109638600_109639000
ES_00013659	chr12	+	642	1	FSM	ENSMUSG00000065757.3	ENSMUST00000083823.3	82	1	0	-560	0	560	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGAATAGCAATCAACAAT	3833	False	NA	NA	False	NA	NA	NA	109640346	109640988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109640300_109641000
ES_00013660	chr12	+	455	1	FSM	ENSMUSG00000064726.3	ENSMUST00000082792.3	72	1	-385	2	-385	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGAGAAGATAAGTGGAT	1859	False	NA	NA	False	NA	NA	NA	109652846	109653301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109652800_109653300
ES_00013661	chr12	+	634	4	FSM	ENSMUSG00000097391.9	ENSMUST00000183068.8	634	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7.78888096369861	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTGCGTGTCTGTATT	626	False	NA	21	True	AATAAA	-21	NA	109710234	109715892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_109710282_109714558_109714728_109715389_109715444_109715528
ES_00013662	chr12	+	578	3	ISM	ENSMUSG00000097391.9	ENSMUST00000181543.9	1300	8	8822	0	2	0	3prime_fragment	FALSE	canonical	3	18	junction_1	20	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTGCGTGTCTGTATT	628	False	NA	21	True	AATAAA	-21	NA	109710236	109715892	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_+_109710282_109714558_109714728_109715528
ES_00013664	chr12	+	2525	4	NIC	ENSMUSG00000037957.15	novel	2384	3	NA	NA	11	-1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_3	63.2525800966956	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTTGTTTATCCTTTT	5383	False	NA	NA	False	ATTAAA	-14	NA	110704462	110770671	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_110704712_110745729_110745913_110759547_110760808_110769838
ES_00013671	chr12	+	2334	15	NIC	ENSMUSG00000021288.20	novel	2272	14	NA	NA	-49	-12	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	45.6198242800971	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTCCAACTGACCTGTG	NA	False	NA	-3	True	AATAAA	-1	NA	111725340	111761317	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111760082_111760134_111760770
ES_00013675	chr12	+	2795	15	FSM	ENSMUSG00000037679.10	ENSMUST00000222275.2	2795	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.98591982492255	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTGGTATTTAGACCA	NA	False	NA	11	True	AATAAA	-19	NA	112571090	112581991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_+_112571297_112571806_112571953_112572227_112572290_112572677_112572781_112573406_112573493_112573928_112574030_112574762_112574834_112574910_112575019_112575281_112575353_112576106_112576228_112576552_112576718_112576895_112576999_112577128_112577291_112577843_112578471_112581328
ES_00013684	chr12	-	202	2	Antisense	novelGene_ENSMUSG00000071454.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	147	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTCGTGTTGTTACATC	NA	False	NA	NA	False	NA	NA	NA	3632336	3594319	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_3594468_3632282
ES_00013685	chr12	-	220	1	Intergenic	novelGene_815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGCTGGACTTCTATAC	1702	False	NA	NA	False	NA	NA	NA	3871262	3871042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_3871000_3871300
ES_00013686	chr12	-	225	2	NNC	ENSMUSG00000112505.2	novel	399	3	NA	NA	4179	3313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCTGCTTGGAAGTCA	NA	False	NA	NA	False	NA	NA	NA	4622577	4619087	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_4619125_4622389
ES_00013687	chr12	-	2530	2	FSM	ENSMUSG00000037169.16	ENSMUST00000130990.2	2522	2	0	-8	0	5	multi-exon	FALSE	canonical	3	927	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCCTTCCTAGCTTGG	NA	False	NA	-13	True	AATAAA	-25	NA	12990617	12986088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_12987612_12989610
ES_00013688	chr12	-	522	1	FSM	ENSMUSG00000113188.2	ENSMUST00000220724.2	652	1	92	38	92	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACACCTCAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	13487007	13486485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_13486500_13487000
ES_00013689	chr12	-	5276	21	NNC	ENSMUSG00000020593.17	novel	5581	21	NA	NA	17	4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_16	30.0886606548048	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATATGAACTTTAAATTAT	7263	False	NA	-18	True	AATAAA	-31	NA	16639750	16585950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621261_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ES_00013690	chr12	-	554	4	FSM	ENSMUSG00000036523.17	ENSMUST00000160755.2	738	4	0	184	0	-184	multi-exon	FALSE	canonical	1	2	junction_1	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGTGAACTTAGCACATG	NA	False	NA	NA	False	NA	NA	NA	16740803	16732128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_16732334_16734362_16734525_16738497_16738641_16740759
ES_00013692	chr12	-	1502	3	Intergenic	novelGene_841	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_2	18	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTCATAAGATTTCTC	NA	False	NA	NA	False	NA	NA	NA	19127637	19125384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_19125441_19125608_19126399_19126981
ES_00013693	chr12	-	4114	2	Genic_Genomic	ENSMUSG00000113411.2	novel	370	1	NA	NA	-903	3689	multi-exon	TRUE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	19916399	19911437	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_19915436_19916283
ES_00013694	chr12	-	634	4	Intergenic	novelGene_842	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAATCAATGTGGTAAAAC	NA	False	NA	NA	False	NA	NA	NA	19925307	19916983	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_19917357_19918884_19918946_19919142_19919270_19925234
ES_00013695	chr12	-	4845	1	FSM	ENSMUSG00000091071.3	ENSMUST00000110971.3	1471	1	-34	-3340	-34	3340	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCCTTGTGCATCCCAAC	NA	False	NA	NA	False	NA	NA	NA	20865762	20860917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_20860900_20865800
ES_00013696	chr12	-	544	5	NIC	ENSMUSG00000069755.6	novel	928	6	NA	NA	174	-166	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	2.06155281280883	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTCTATGAATATAATGAA	NA	False	NA	NA	False	NA	NA	NA	20971089	20950909	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_20950936_20952270_20952332_20952533_20952661_20964759_20964843_20970842
ES_00013697	chr12	-	2215	8	NNC	ENSMUSG00000076432.14	novel	1970	7	NA	NA	40	349	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1599.38950087532	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAGAAAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	21467549	21439722	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_21439749_21440073_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ES_00013698	chr12	-	4161	4	Intergenic	novelGene_846	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_1	50.8002624665136	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	21828890	21776839	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_21780400_21810872_21810934_21811135_21811263_21828477
ES_00013699	chr12	-	549	1	FSM	ENSMUSG00000091105.2	ENSMUST00000164169.2	549	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGCCTGAGAGCGCGCC	NA	False	NA	NA	False	AATACA	-42	NA	21826708	21826159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_21826200_21826700
ES_00013700	chr12	-	2097	4	Intergenic	novelGene_850	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	18.006171781426	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAATCAATGTAGTAAAG	NA	False	NA	NA	False	NA	NA	NA	21933714	21929744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_21930578_21930913_21931967_21933301_21933363_21933564
ES_00013701	chr12	-	1666	4	Intergenic	novelGene_852	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3.29983164553722	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTCAAGCACCCTGT	NA	False	NA	NA	False	AATAAA	-22	NA	22146637	22140294	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_22141142_22143173_22143278_22144661_22144902_22146162
ES_00013702	chr12	-	1760	1	Intergenic	novelGene_853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTTATTGTCTCTATA	NA	False	NA	-18	True	NA	NA	NA	22178901	22177141	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_22177100_22178900
ES_00013704	chr12	-	1481	2	Fusion	ENSMUSG00000113413.2_ENSMUSG00000113574.2	novel	562	2	NA	NA	0	-620	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTTGGGAAATAAGAAGAA	NA	False	NA	NA	False	AATACA	-31	NA	22795412	22747554	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr12_-_22748912_22795288
ES_00013705	chr12	-	869	4	NNC	ENSMUSG00000073164.12	novel	3370	5	NA	NA	8576	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.56846672960488	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGCCCCAGCTGAGCTC	NA	False	NA	-10	True	NA	NA	NA	23051423	23009680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_23010256_23042788_23042850_23043051_23043179_23051317
ES_00013706	chr12	-	4196	4	Genic_Genomic	ENSMUSG00000113798.2	novel	126	1	NA	NA	-289	44136	multi-exon	FALSE	canonical	3	4	junction_1	5.79271573232759	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTATTTGGTTGTTG	NA	False	NA	NA	False	AATAAA	-43	NA	23239688	23195137	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_23198731_23200064_23200126_23200325_23200453_23239273
ES_00013707	chr12	-	725	4	Genic_Genomic	ENSMUSG00000113532.2	novel	127	1	NA	NA	-309	30352	multi-exon	FALSE	canonical	0	0	junction_3	18.9267594221045	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGGAGAGAAAACACATGA	NA	False	NA	NA	False	NA	NA	NA	23477193	23446405	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_23446506_23447833_23447895_23448096_23448224_23476756
ES_00013708	chr12	-	3892	5	Genic_Genomic	ENSMUSG00000112997.2	novel	126	1	NA	NA	-284	21707	multi-exon	TRUE	canonical	0	0	junction_1	17.2391270080593	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23684760	23662643	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_23665621_23666124_23666442_23667883_23667945_23668146_23668274_23684350
ES_00013709	chr12	-	1854	4	NNC	ENSMUSG00000113691.2	novel	1740	3	NA	NA	-6291	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	4.92160768674447	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAATGTGGGAAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	23840423	23830857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_23832410_23833744_23833806_23834005_23834133_23840309
ES_00013710	chr12	-	240	2	Intergenic	novelGene_864	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGTGGTATCAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	23923773	23916597	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_23916747_23923682
ES_00013712	chr12	-	809	3	NNC	ENSMUSG00000114120.2	novel	578	3	NA	NA	-32429	-4889	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCACCTGTGCTCATCCA	NA	False	NA	NA	False	NA	NA	NA	24390681	24357696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_24358277_24390254_24390316_24390513
ES_00013713	chr12	-	7913	1	FSM	ENSMUSG00000063632.7	ENSMUST00000079063.7	8311	1	72	326	72	-326	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCGTATCATGACGG	NA	False	NA	NA	False	ATTAAA	-19	NA	27392501	27384588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_27384600_27392500
ES_00013714	chr12	-	299	1	FSM	ENSMUSG00000112799.2	ENSMUST00000219793.2	1026	1	872	-145	872	145	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTACTGCAGCTTAAAC	NA	False	NA	NA	False	NA	NA	NA	31149773	31149474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31149500_31149800
ES_00013715	chr12	-	225	1	FSM	ENSMUSG00000112567.2	ENSMUST00000219694.2	207	1	29	-47	29	47	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	AATAAA	-21	NA	31308827	31308602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31308600_31308800
ES_00013716	chr12	-	1579	5	FSM	ENSMUSG00000020664.11	ENSMUST00000218624.2	661	5	-918	0	-742	0	multi-exon	FALSE	canonical	3	735	junction_3	49.8717104178311	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCGGCGGCCCTTTACTC	NA	False	NA	NA	False	NA	NA	NA	31392455	31384719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376
ES_00013717	chr12	-	4139	6	NIC	ENSMUSG00000020659.17	novel	1399	7	NA	NA	-242	9	intron_retention	FALSE	canonical	3	17	junction_4	67.8250691116493	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAGTCTTTAAACCTAAT	NA	False	NA	NA	False	AATAAA	-28	NA	31549857	31534925	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542176_31544589_31544749_31549521
ES_00013718	chr12	-	200	2	NNC	ENSMUSG00000052125.17	novel	3312	5	NA	NA	-793	-355	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGTTATTTGAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	33190413	33183407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_33183432_33190237
ES_00013719	chr12	-	213	1	FSM	ENSMUSG00000113756.2	ENSMUST00000221733.2	862	1	601	48	601	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCTCTGTTCAGAGGAC	NA	False	NA	NA	False	NA	NA	NA	34340533	34340320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_34340300_34340500
ES_00013724	chr12	-	250	1	FSM	ENSMUSG00000111920.2	ENSMUST00000219471.2	767	1	521	-4	521	4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTACATATGCAGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	44249433	44249183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_44249200_44249400
ES_00013726	chr12	-	284	3	Antisense	novelGene_ENSMUSG00000020955.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTATTTTTAAACTT	1020	False	NA	NA	False	NA	NA	NA	51761083	51662614	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_51662731_51734939_51734965_51760940
ES_00013727	chr12	-	8772	43	NNC	ENSMUSG00000035247.17	novel	8988	43	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_25	35.4950093901942	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCGTGTTACTGGTT	NA	False	NA	0	True	ATTAAA	-19	NA	51876101	51790499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829368_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
ES_00013730	chr12	-	284	2	ISM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	11415	0	11415	0	3prime_fragment	FALSE	canonical	3	69	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55190266	55188893	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_55189069_55190157
ES_00013731	chr12	-	325	3	ISM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	5200	3149	5200	-3149	internal_fragment	FALSE	canonical	3	127	junction_1	39	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCCCTTAATTATTTC	NA	False	NA	NA	False	NA	NA	NA	55196481	55192042	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_55192155_55195887_55196025_55196405
ES_00013732	chr12	-	622	2	Genic_Genomic	ENSMUSG00000059033.8	novel	523	1	NA	NA	0	56982	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATGAAAAATCCTGGTAG	NA	False	NA	NA	False	NA	NA	NA	55443014	55385509	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_55385546_55442428
ES_00013733	chr12	-	645	2	Genic_Genomic	ENSMUSG00000059033.8	novel	523	1	NA	NA	-24	56982	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATGAAAAATCCTGGTAG	NA	False	NA	NA	False	NA	NA	NA	55443038	55385509	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_55385545_55442428
ES_00013735	chr12	-	1454	10	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	0	93025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.735198649298	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAATGTGAAATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	56392606	56282062	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_56282091_56375100_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ES_00013736	chr12	-	1453	10	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	0	93025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.735198649298	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAATGTGAAATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	56392606	56282062	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_56282091_56375101_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ES_00013737	chr12	-	1465	10	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	0	93025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.811193009831	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAATGTGAAATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	56392620	56282062	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_56282091_56375100_56375582_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ES_00013738	chr12	-	286	1	FSM	ENSMUSG00000104155.2	ENSMUST00000191707.2	864	1	537	41	537	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTTCAGAAATAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	56656724	56656438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_56656400_56656700
ES_00013739	chr12	-	1487	7	FSM	ENSMUSG00000020993.10	ENSMUST00000217660.2	1486	7	0	-1	0	1	multi-exon	FALSE	canonical	0	0	junction_5	143.962668772151	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAAAGTTTATTTTAATA	NA	False	NA	-4	True	NA	NA	NA	59108258	59089912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59106041_59106298_59107941
ES_00013743	chr12	-	4972	4	NNC	ENSMUSG00000020973.8	novel	3390	3	NA	NA	-1569	970	intron_retention	FALSE	non_canonical	0	0	junction_1	123.075405973556	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGGTTTTAAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	69246772	69234890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_69234916_69235872_69237169_69239581_69239726_69243265
ES_00013744	chr12	-	830	7	ISM	ENSMUSG00000020974.7	ENSMUST00000221411.2	1641	19	13	11804	13	-2474	5prime_fragment	FALSE	canonical	3	405	junction_2	38.5774833578115	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGTTGCTGCGGTAATGC	NA	False	NA	NA	False	NA	NA	NA	69274940	69260350	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ES_00013745	chr12	-	3777	14	ISM	ENSMUSG00000034801.14	ENSMUST00000035773.14	5607	23	64733	-7	0	3	3prime_fragment	TRUE	canonical	3	44	junction_4	10.551087327237	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATATTGTTTTTCATC	NA	False	NA	2	True	AATAAA	-28	NA	69663893	69630532	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627
ES_00013747	chr12	-	3522	1	ISM	ENSMUSG00000021068.18	ENSMUST00000085314.11	9675	29	87898	0	11871	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTTTCTGCCTTGG	NA	False	NA	-2	True	AATAAA	-17	NA	70061730	70058208	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_70058200_70061700
ES_00013748	chr12	-	6734	29	NIC	ENSMUSG00000021068.18	novel	7183	30	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_13	9.05728650179016	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGTCTTCTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	70158380	70065512	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_70066037_70067607_70067806_70072180_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905_70091027_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209
ES_00013750	chr12	-	258	1	FSM	ENSMUSG00000021079.17	ENSMUST00000223544.2	1098	1	684	156	646	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAGAGTTGCCTGTAA	NA	False	NA	NA	False	NA	NA	NA	71182725	71182467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_71182500_71182700
ES_00013751	chr12	-	893	1	NIC	ENSMUSG00000019718.9	novel	1831	5	NA	NA	38	-7245	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTTCAGTGTCTTTGCCT	NA	False	NA	1	True	AATAAA	-26	NA	72132175	72131282	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_72131300_72132200
ES_00013752	chr12	-	202	2	Antisense	novelGene_ENSMUSG00000021103.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	462	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGATAACCAGCAAGATAAC	NA	False	NA	NA	False	NA	NA	NA	73203804	73198301	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_73198450_73203750
ES_00013753	chr12	-	1412	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTTTGTAATTCAAGGTA	NA	False	NA	-9	True	AATAAA	-18	NA	73333484	73326787	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
ES_00013755	chr12	-	620	3	NNC	ENSMUSG00000113031.2	novel	636	3	NA	NA	80	446	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCGGGAATCATGACTAA	NA	False	NA	NA	False	AATAAA	-18	NA	74363856	74360528	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_74360901_74362065_74362187_74363729
ES_00013756	chr12	-	802	2	NNC	ENSMUSG00000045690.9	novel	2979	2	NA	NA	38155	49094	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGTTTTAATATAGATAAG	NA	False	NA	NA	False	NA	NA	NA	75678146	75628275	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_75628299_75677367
ES_00013757	chr12	-	1569	7	NNC	ENSMUSG00000021056.9	novel	1980	9	NA	NA	-363	1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	10.8435848930754	61	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGATGGTTTGAACTAC	NA	False	NA	NA	False	AATAAA	-21	NA	76276601	76250758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_76251085_76253561_76253769_76259148_76259332_76261186_76261493_76263736_76263867_76268256_76268514_76276441
ES_00013758	chr12	-	8084	32	FSM	ENSMUSG00000021061.16	ENSMUST00000166101.2	8084	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	5.86085623403661	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTCTCTGGGGGAGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	76756797	76642903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655468_76655810_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337_76660095_76665812_76665951_76667429_76668301_76668916_76669068_76669682_76669986_76671000_76671160_76671769_76671888_76673721_76673910_76674655_76674769_76675249_76675366_76675668_76675750_76676386_76676479_76677358_76677533_76679153_76679306_76696550_76696753_76756708
ES_00013759	chr12	-	237	2	Antisense	novelGene_ENSMUSG00000033373.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTGTGAGACATGTCC	2760	False	NA	NA	False	NA	NA	NA	76907720	76904464	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_76904495_76907513
ES_00013760	chr12	-	225	2	Antisense	novelGene_ENSMUSG00000033373.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	354	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACCTAACTCAAAAAGC	4289	False	NA	NA	False	NA	NA	NA	76978535	76907513	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_76907670_76978466
ES_00013761	chr12	-	2670	4	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	2	-2	intron_retention	FALSE	canonical	3	20	junction_1	20.7257220756131	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTAGTAGTGTCTTCTTA	NA	False	NA	-2	True	AATAAA	-18	NA	77008957	76984044	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008763
ES_00013762	chr12	-	1125	1	FSM	ENSMUSG00000112008.2	ENSMUST00000218256.2	1319	1	328	-134	328	134	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTTCCTGGTAGAGCTC	NA	False	NA	NA	False	NA	NA	NA	76988239	76987114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_76987100_76988200
ES_00013763	chr12	-	1292	10	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	0	77940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.989774890768	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGGCAAACATCATATCG	112	False	NA	NA	False	NA	NA	NA	78908269	78809558	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_78809584_78889755_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
ES_00013765	chr12	-	697	1	FSM	ENSMUSG00000091534.3	ENSMUST00000170289.2	428	1	-326	57	-326	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGTTCCTGGGGTATGC	NA	False	NA	NA	False	NA	NA	NA	79210935	79210238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_79210200_79210900
ES_00013767	chr12	-	875	6	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	2	60864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4279.47347228605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGGGCGTTCACAGCCTT	NA	False	NA	NA	False	NA	NA	NA	80690604	80619931	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_80619972_80680808_80681302_80682588_80682655_80684263_80684385_80687730_80687819_80690537
ES_00013768	chr12	-	871	6	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	0	60864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4279.47347228605	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGGGCGTTCACAGCCTT	NA	False	NA	NA	False	NA	NA	NA	80690606	80619931	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_80619972_80680814_80681302_80682588_80682655_80684263_80684385_80687730_80687819_80690537
ES_00013769	chr12	-	645	1	FSM	ENSMUSG00000112263.2	ENSMUST00000217770.2	575	1	-8	-62	-8	62	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTGAAGACCACCAATAAA	NA	False	NA	NA	False	NA	NA	NA	80695993	80695348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80695300_80696000
ES_00013770	chr12	-	944	2	FSM	ENSMUSG00000044062.8	ENSMUST00000153297.2	944	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGGATATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	80739240	80733143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_80733782_80738934
ES_00013771	chr12	-	388	1	Intergenic	novelGene_936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATGATTGAATCGAT	NA	False	NA	NA	False	NA	NA	NA	80972493	80972105	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_80972100_80972500
ES_00013772	chr12	-	579	5	FSM	ENSMUSG00000091803.8	ENSMUST00000166723.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	163.084908866517	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTCCTGCAAGCACAC	1035	False	NA	76	True	NA	NA	NA	81531847	81405941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81406119_81421191_81421282_81521360_81521424_81527704_81527777_81531670
ES_00013773	chr12	-	669	1	FSM	ENSMUSG00000072972.4	ENSMUST00000085319.4	2504	1	1785	50	1785	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGATAAATTGGAGAATTT	8416	False	NA	NA	False	AAGAAA	-20	NA	81466935	81466266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81466300_81466900
ES_00013774	chr12	-	692	3	FSM	ENSMUSG00000090935.11	ENSMUST00000169158.2	691	3	0	-1	0	1	multi-exon	FALSE	canonical	3	189	junction_2	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	81579654	81551023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81551414_81557602_81557740_81579489
ES_00013775	chr12	-	436	1	FSM	ENSMUSG00000089806.2	ENSMUST00000161951.2	436	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATTTGGCAATGGAAA	NA	False	NA	NA	False	NA	NA	NA	81636644	81636208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_81636200_81636600
ES_00013776	chr12	-	2165	1	FSM	ENSMUSG00000099708.2	ENSMUST00000183323.3	2000	1	35	-200	35	200	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATACTCACAAATTACTG	NA	False	NA	NA	False	ACTAAA	-20	NA	83680572	83678407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_83678400_83680600
ES_00013777	chr12	-	3378	10	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	0	12	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	27.7959940270287	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTAATCTCTCTTTTT	NA	False	NA	12	True	NA	NA	NA	83923572	83840795	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441
ES_00013778	chr12	-	227	2	Intergenic	novelGene_948	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGACAGAGGAGAGAGGCT	NA	False	NA	NA	False	NA	NA	NA	84283984	84278345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_84278374_84283785
ES_00013780	chr12	-	3184	7	FSM	ENSMUSG00000021234.10	ENSMUST00000133230.8	3203	7	19	0	19	0	multi-exon	FALSE	canonical	2	3	junction_6	4.09945795874961	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATATAATAATAATGA	465	False	NA	NA	False	TTTAAA	-14	NA	84408547	84393265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84404625_84408465
ES_00013781	chr12	-	557	3	FSM	ENSMUSG00000021234.10	ENSMUST00000126752.2	686	3	0	129	0	-129	multi-exon	FALSE	canonical	3	13	junction_2	0.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAGGCAATAGGAATTT	7383	False	NA	NA	False	AGTAAA	-27	NA	84401629	84395261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84395545_84400573_84400702_84401483
ES_00013782	chr12	-	200	1	Intergenic	novelGene_953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCTCTCTTTTTAAAGT	6599	False	NA	NA	False	NA	NA	NA	84539575	84539375	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_84539400_84539600
ES_00013783	chr12	-	383	2	Antisense	novelGene_ENSMUSG00000085793.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGCTCTTTAACTTCTC	NA	False	NA	NA	False	NA	NA	NA	84586958	84556726	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr12_-_84556762_84586610
ES_00013784	chr12	-	232	1	Intergenic	novelGene_954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGGTTCTTAGCACCCA	NA	False	NA	NA	False	NA	NA	NA	84586803	84586571	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_84586600_84586800
ES_00013785	chr12	-	2540	20	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-36	51509	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.742076733355	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGGGCCTGGAGAGATGG	NA	False	NA	NA	False	NA	NA	NA	84664223	84596728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_84596756_84649301_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
ES_00013786	chr12	-	825	2	FSM	ENSMUSG00000021240.7	ENSMUST00000221948.2	825	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGCAAGCATGCAGGTT	NA	False	NA	NA	False	NA	NA	NA	84650826	84649867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_84649934_84650067
ES_00013787	chr12	-	220	2	NNC	ENSMUSG00000071234.4	novel	2524	4	NA	NA	-18236	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGATACAGTGACAGAGAG	9248	False	NA	NA	False	NA	NA	NA	84763841	84724834	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_84724863_84763649
ES_00013788	chr12	-	5333	20	NIC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	0	0	intron_retention	FALSE	canonical	3	7	junction_19	21.533971100504	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCTAAATGAGTGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	85017630	84964923	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017471
ES_00013789	chr12	-	2875	11	FSM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	6	0	6	0	multi-exon	FALSE	canonical	1	2	junction_6	69.4942443659905	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTTTGCATCATTAATA	NA	False	NA	-2	True	AATAAA	-17	NA	85198032	85182022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117_85187251_85187602_85187651_85193636_85193730_85194519_85194645_85196397_85196683_85197936
ES_00013790	chr12	-	5712	13	NNC	ENSMUSG00000021245.16	novel	4699	13	NA	NA	-29	59	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_12	26.2519840520039	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATGCATCATTTATTT	NA	False	NA	NA	False	TATAAA	-23	NA	85317402	85281234	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85309540_85309637_85312925_85316249_85317247
ES_00013791	chr12	-	773	1	FSM	ENSMUSG00000113165.2	ENSMUST00000223391.2	2173	1	-22	1422	-22	-1422	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTGGCATCTGAGAACTA	NA	False	NA	NA	False	GATAAA	-43	NA	85645987	85645214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_85645200_85646000
ES_00013792	chr12	-	1253	6	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	397.913357403342	39	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871294	85862221	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85870122_85870209_85871244
ES_00013793	chr12	-	220	2	Intergenic	novelGene_959	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAATTAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	86643634	86570944	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_-_86570974_86643443
ES_00013795	chr12	-	2508	20	NNC	ENSMUSG00000021038.18	novel	2524	20	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_16	22.9205541066096	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCATCTGGTTACTTAG	NA	False	NA	-5	True	AATAAA	-26	NA	87313013	87285641	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304224_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ES_00013797	chr12	-	908	2	ISM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	0	7724	0	-3942	5prime_fragment	FALSE	canonical	3	97	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTATCTGTCTGCTTG	7669	False	NA	NA	False	AAGAAA	-35	NA	87346479	87333135	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr12_-_87333912_87346347
ES_00013798	chr12	-	5380	1	FSM	ENSMUSG00000079036.11	ENSMUST00000176758.3	3598	1	-1788	6	-1788	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCAGGTGTGGTTATAT	NA	False	NA	NA	False	AAAAAG	-39	NA	87477995	87472615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87472600_87478000
ES_00013799	chr12	-	460	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	55	-36	55	36	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGGGAACGTCCGAGAAC	NA	False	NA	NA	False	NA	NA	NA	87518984	87518524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_87518500_87519000
ES_00013802	chr12	-	2695	5	FSM	ENSMUSG00000020961.16	ENSMUST00000164713.8	2944	5	71	178	71	-178	multi-exon	FALSE	canonical	1	3	junction_2	9.02773504263389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCCTGGAGAGGGCTTCC	NA	False	NA	NA	False	NA	NA	NA	91710558	91608494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91608698_91614005_91615845_91680700_91680899_91707244_91707521_91710379
ES_00013805	chr12	-	378	1	FSM	ENSMUSG00000066389.2	ENSMUST00000085128.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	91858047	91857669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_91857700_91858000
ES_00013806	chr12	-	2650	14	NIC	ENSMUSG00000051166.11	novel	7595	44	NA	NA	9445	-439	combination_of_known_splicesites	TRUE	canonical	1	1	junction_11	14.13041538856	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAGCATTAAATTCATAT	NA	False	NA	NA	False	AATAAA	-20	NA	98784179	98755846	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689_98760879_98762765_98762881_98765049_98765189_98767161_98767371_98768542_98768717_98776777_98776877_98782193_98782324_98784078
ES_00013807	chr12	-	1459	1	FSM	ENSMUSG00000051166.11	ENSMUST00000222593.2	1690	1	258	-27	258	27	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGTTGCATCTTGATCCC	NA	False	NA	NA	False	NA	NA	NA	98765987	98764528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_98764500_98766000
ES_00013808	chr12	-	653	3	FSM	ENSMUSG00000033713.13	ENSMUST00000177269.2	726	3	73	0	73	0	multi-exon	FALSE	canonical	1	1	junction_2	39	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAGAGTATAGACAAAATC	NA	False	NA	NA	False	NA	NA	NA	99378791	99307761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_99307794_99354619_99355177_99378727
ES_00013810	chr12	-	595	2	FSM	ENSMUSG00000100211.2	ENSMUST00000185726.2	645	2	38	12	38	-12	multi-exon	FALSE	canonical	0	0	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGGTAATTCTCGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	99594195	99592323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_99592588_99593864
ES_00013811	chr12	-	2627	19	NIC	ENSMUSG00000033530.9	novel	3446	20	NA	NA	18	-172	combination_of_known_splicesites	FALSE	canonical	3	7	junction_15	53.9158294628458	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCCAGAATCATTGCTCT	NA	False	NA	NA	False	NA	NA	NA	100487033	100267673	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100432438_100432570_100461530_100461700_100466334_100466490_100486829
ES_00013812	chr12	-	8629	30	NIC	ENSMUSG00000021182.17	novel	7542	30	NA	NA	-91	8	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	22.877068985658	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTCTTCAGTAAATGC	NA	False	NA	5	True	AATAAA	-25	NA	100995406	100877773	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100888450_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
ES_00013813	chr12	-	909	5	FSM	ENSMUSG00000041669.16	ENSMUST00000074416.10	909	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	NA	False	NA	NA	False	AATGAA	-16	NA	103208409	103163166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103163611_103168907_103169038_103201844_103201981_103207598_103207722_103208333
ES_00013814	chr12	-	1513	5	FSM	ENSMUSG00000071178.12	ENSMUST00000186166.7	1762	5	249	0	249	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTGACTCTGTGGGTTT	7618	False	NA	NA	False	ATTAAA	-38	NA	103706525	103694414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_103694693_103695489_103695641_103696508_103696780_103698219_103698852_103706344
ES_00013815	chr12	-	2492	12	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	6	-7	combination_of_known_junctions	FALSE	canonical	3	90	junction_9	135.793596411783	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGGTGTTTTTGTTTGTT	NA	False	NA	-7	True	ATTAAA	-12	NA	108145466	108072696	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108129231_108129325_108131321_108131432_108145411
ES_00013817	chr12	-	799	2	Genic_Genomic	ENSMUSG00000113625.2	novel	642	1	NA	NA	-36	40420	multi-exon	FALSE	non_canonical	0	0	junction_1	0	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACAACAAGAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109861563	109820465	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr12_-_109820496_109860794
ES_00013818	chr12	-	2177	4	NNC	ENSMUSG00000113581.2	novel	1380	4	NA	NA	-833	2	intron_retention	FALSE	non_canonical	0	0	junction_3	4.18993502999218	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACAGTGTGGACTTACT	NA	False	NA	NA	False	AATAAA	-20	NA	110245439	110241816	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110242012_110243059_110243861_110243984_110244645_110244918
ES_00013819	chr12	-	1945	1	FSM	ENSMUSG00000113662.2	ENSMUST00000222675.2	2219	1	-1203	1477	-1203	-1477	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACAGAGCCAGCCCCTCA	NA	False	NA	NA	False	NA	NA	NA	110569600	110567655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110567700_110569600
ES_00013822	chr12	-	1483	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1831	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	88.8999993056423	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9503	False	NA	-3	True	AATATA	-18	NA	110805530	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774552_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
ES_00013823	chr12	-	1642	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	74.8416510191533	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7674	False	NA	-3	True	AATATA	-18	NA	110807359	110774231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ES_00013824	chr12	-	1579	6	FSM	ENSMUSG00000021276.11	ENSMUST00000220607.2	1579	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	194.982460749679	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3397	False	NA	-10	True	NA	NA	NA	110855531	110839595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_110840564_110843274_110843405_110843656_110843807_110846118_110846249_110850323_110850493_110855499
ES_00013825	chr12	-	749	4	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.591040608705	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3380	False	NA	0	True	AATAAA	-21	NA	110855548	110844025	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr12_-_110844427_110846118_110846249_110850323_110850493_110855499
ES_00013827	chr12	-	2839	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	0	0	0	0	multi-exon	FALSE	canonical	3	8476	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638716	111635794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111636176_111636258
ES_00013831	chr12	-	613	4	FSM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	0	-1	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1208.36593059479	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933328	111927808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933027
ES_00013834	chr12	-	967	4	FSM	ENSMUSG00000002804.5	ENSMUST00000222793.2	945	4	0	-22	0	0	multi-exon	FALSE	canonical	3	208	junction_1	7.71722460186015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCGCTGGCTTTGAGC	8884	False	NA	-6	True	AATAAA	-19	NA	112905707	112898348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr12_-_112898671_112901975_112902480_112902898_112902943_112905610
ES_00013840	chr12	+	215	1	Intergenic	novelGene_822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGTTTATACCACAGT	202	False	NA	NA	False	AGTAAA	-15	NA	4630114	4630329	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_4630100_4630300
ES_00013841	chr12	+	464	1	Intergenic	novelGene_824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATGAGAAACACGGAAGAG	1254	False	NA	NA	False	AAGAAA	-44	NA	4636875	4637339	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_4636900_4637300
ES_00013843	chr12	+	231	1	Intergenic	novelGene_834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCACTGGGGTGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	17681575	17681806	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_17681600_17681800
ES_00013844	chr12	+	201	1	Intergenic	novelGene_838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAAGTGGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	18543974	18544175	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_18544000_18544200
ES_00013845	chr12	+	755	1	Intergenic	novelGene_856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTATTAACTAATGCTTC	NA	False	NA	NA	False	NA	NA	NA	23209528	23210283	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_23209500_23210300
ES_00013847	chr12	+	302	1	Intergenic	novelGene_867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAAACCTATCTGACAAA	7495	False	NA	NA	False	GATAAA	-36	NA	24721227	24721529	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_24721200_24721500
ES_00013848	chr12	+	202	1	Intergenic	novelGene_868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTATTATTTTAACAGCAG	79	False	NA	NA	False	NA	NA	NA	25099784	25099986	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_25099800_25100000
ES_00013849	chr12	+	237	1	Intergenic	novelGene_870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAAGAATTATGTCGTT	NA	False	NA	NA	False	NA	NA	NA	27469412	27469649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_27469400_27469600
ES_00013850	chr12	+	210	1	Intergenic	novelGene_873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATCTCACCAGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	28711774	28711984	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_28711800_28712000
ES_00013851	chr12	+	239	1	Intergenic	novelGene_875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTTTACATTTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	31800406	31800645	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_31800400_31800600
ES_00013852	chr12	+	457	1	Intergenic	novelGene_887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCATAATTTATTTATTAAC	NA	False	NA	NA	False	NA	NA	NA	44761509	44761966	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_44761500_44762000
ES_00013853	chr12	+	204	1	Intergenic	novelGene_891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATAAATCCATTTTGACT	1933	False	NA	NA	False	AAAAAG	-6	NA	47814937	47815141	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_47814900_47815100
ES_00013854	chr12	+	2775	1	Intergenic	novelGene_892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	501	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTATTTAAAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	51022195	51024970	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_51022200_51025000
ES_00013855	chr12	+	243	1	Intergenic	novelGene_894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTATTTTTGAATGATG	NA	False	NA	NA	False	NA	NA	NA	54743755	54743998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_54743800_54744000
ES_00013857	chr12	+	204	1	Intergenic	novelGene_905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGCAGGGACACATTCTA	NA	False	NA	NA	False	NA	NA	NA	69710592	69710796	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_69710600_69710800
ES_00013859	chr12	+	307	1	Intergenic	novelGene_927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACTTTGCTACCCACAG	NA	False	NA	NA	False	NA	NA	NA	78397641	78397948	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_78397600_78397900
ES_00013860	chr12	+	201	1	Intergenic	novelGene_931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTTATGTACTATTTG	NA	False	NA	NA	False	NA	NA	NA	80503947	80504148	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_80503900_80504100
ES_00013861	chr12	+	202	1	Intergenic	novelGene_938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTAAGTACACTGTAGC	NA	False	NA	NA	False	NA	NA	NA	81970480	81970682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_81970500_81970700
ES_00013862	chr12	+	930	1	Intergenic	novelGene_942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATTCTTGCCCTTCTGA	NA	False	NA	NA	False	ATTAAA	-10	NA	82540802	82541732	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_82540800_82541700
ES_00013863	chr12	+	203	1	Intergenic	novelGene_943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGACTGCTTCCCAGG	NA	False	NA	NA	False	NA	NA	NA	83621986	83622189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_83622000_83622200
ES_00013865	chr12	+	1968	1	Intergenic	novelGene_945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGCCATTGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	83730106	83732074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_83730100_83732100
ES_00013866	chr12	+	215	1	Intergenic	novelGene_962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGGTCTAGAGTCTTTC	NA	False	NA	7	True	TTTAAA	-1	NA	87504455	87504670	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_87504500_87504700
ES_00013867	chr12	+	269	1	Intergenic	novelGene_965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGTCTCGCCACACGAA	NA	False	NA	NA	False	NA	NA	NA	88319550	88319819	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_88319600_88319800
ES_00013868	chr12	+	249	1	Intergenic	novelGene_975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3002	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTTAGTGTTTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	102330450	102330699	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_102330400_102330700
ES_00013869	chr12	+	256	1	Intergenic	novelGene_976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCATGAAACTCTGAGTT	NA	False	NA	NA	False	AAGAAA	-41	NA	102675316	102675572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_102675300_102675600
ES_00013870	chr12	+	399	1	Intergenic	novelGene_988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAAATAAGTAAAT	2687	False	NA	NA	False	AATAAA	-37	NA	108680476	108680875	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr12_+_108680500_108680900
ES_00013873	chr13	+	912	1	FSM	ENSMUSG00000114003.2	ENSMUST00000221154.2	781	1	-19	-112	-19	112	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	3348867	3349779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_3348900_3349800
ES_00013874	chr13	+	4303	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	0	0	0	0	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGCTTTTTTCTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	3588062	3617871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ES_00013875	chr13	+	2218	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	64550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAATGGAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	3588127	3682421	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615816_3682385
ES_00013877	chr13	+	359	1	FSM	ENSMUSG00000113894.2	ENSMUST00000223046.2	1234	1	-269	1144	-269	-1144	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATCTCAGATTTCAG	778	False	NA	NA	False	AATACA	-25	NA	3612115	3612474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_3612100_3612500
ES_00013878	chr13	+	3768	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	19	666	19	-666	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCACATACACACATATATA	NA	False	NA	NA	False	NA	NA	NA	3684050	3703156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ES_00013879	chr13	+	570	1	FSM	ENSMUSG00000094772.3	ENSMUST00000086508.5	478	1	-10	-82	-10	82	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTTGTTCTTACAAACA	NA	False	NA	NA	False	NA	NA	NA	4664170	4664740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_4664200_4664700
ES_00013880	chr13	+	4244	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	-19	0	-19	0	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGCCTGATTGTTTTT	NA	False	NA	8	True	CATAAA	-18	NA	5911461	5920393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
ES_00013881	chr13	+	4319	5	FSM	ENSMUSG00000000078.8	ENSMUST00000222857.2	1115	5	-85	-3119	-26	0	multi-exon	FALSE	canonical	3	6	junction_1	94.5119040121402	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGCCTGATTGTTTTT	NA	False	NA	8	True	CATAAA	-18	NA	5911454	5920393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_5911842_5913556_5913625_5914766_5915344_5916637_5916762_5917230
ES_00013882	chr13	+	3960	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	-10	-44	-8	44	multi-exon	TRUE	canonical	3	407	junction_1	134.848435629472	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAGAAAACTGAGCGTCT	NA	False	NA	NA	False	NA	NA	NA	6598176	6630595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ES_00013883	chr13	+	3564	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	138	combination_of_known_junctions	FALSE	canonical	3	577	junction_1	112.248614598533	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTGCTCTTGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	6598190	6630216	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ES_00013884	chr13	+	3542	27	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	2	138	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_6	217.731839302739	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTGCTCTTGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	6598211	6630216	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606581_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ES_00013885	chr13	+	3539	27	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	2	138	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_6	205.678470278478	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTGCTCTTGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	6598211	6630216	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606581_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ES_00013888	chr13	+	239	1	FSM	ENSMUSG00000113412.2	ENSMUST00000222882.2	1236	1	294	703	294	-703	mono-exon	FALSE	NA	NA	NA	NA	NA	335	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTTTTGCTGTAAAGCT	NA	False	NA	NA	False	NA	NA	NA	8178462	8178701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_8178500_8178700
ES_00013889	chr13	+	2940	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	87	0	87	0	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGGTAAAATACTTGT	NA	False	NA	75	True	TATAAA	-6	NA	8935623	8942487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
ES_00013890	chr13	+	970	5	FSM	ENSMUSG00000058258.15	ENSMUST00000177397.8	737	5	-346	113	96	0	multi-exon	FALSE	canonical	0	0	junction_4	250.233266173784	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACGAGATTAAAAGCTATT	NA	False	NA	NA	False	NA	NA	NA	8935632	8940481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938135_8940353
ES_00013891	chr13	+	745	5	FSM	ENSMUSG00000058258.15	ENSMUST00000177447.2	745	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	248.116907928501	1656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTGTTGACCATGAGAAA	NA	False	NA	NA	False	NA	NA	NA	8936029	8940636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938152_8940353
ES_00013892	chr13	+	5610	18	FSM	ENSMUSG00000033499.15	ENSMUST00000188211.8	5610	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	74.6898546956926	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9143916	9224024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9208586_9208839_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
ES_00013893	chr13	+	2658	16	FSM	ENSMUSG00000033499.15	ENSMUST00000188939.7	2658	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	105.260861144534	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTCTGCTACTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	9143942	9221332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9208586_9208839_9214710_9214757_9216352_9216518_9220687
ES_00013895	chr13	+	5720	17	FSM	ENSMUSG00000033499.15	ENSMUST00000091829.4	5720	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	76.8002431229876	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAAGATTTTTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	9144017	9224487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
ES_00013896	chr13	+	629	1	FSM	ENSMUSG00000113936.2	ENSMUST00000222096.2	1435	1	551	255	551	-255	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACGGTGAGGAGTATGAGG	NA	False	NA	NA	False	NA	NA	NA	9274123	9274752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_9274100_9274800
ES_00013897	chr13	+	8225	38	NIC	ENSMUSG00000048264.17	novel	8023	37	NA	NA	-34	0	combination_of_known_junctions	TRUE	canonical	3	9	junction_3	10.9053970327172	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCAGTTTCTTAATTGATA	NA	False	NA	26	True	AATAAA	-27	NA	9326529	9718964	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_9327103_9543140_9543213_9544869_9545038_9556614_9556726_9583287_9583414_9586691_9586902_9600219_9600355_9601781_9601902_9603309_9603508_9610706_9610799_9613149_9613261_9617866_9617991_9618336_9618447_9618626_9618730_9621085_9621151_9625169_9625264_9625397_9625518_9626839_9626955_9651392_9651533_9654524_9654662_9656358_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
ES_00013906	chr13	+	468	1	FSM	ENSMUSG00000113448.2	ENSMUST00000223027.2	384	1	-4	-80	-4	80	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTTACTATTATATTAT	NA	False	NA	NA	False	NA	NA	NA	12749263	12749731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_12749300_12749700
ES_00013909	chr13	+	6100	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	-9	0	-9	0	multi-exon	TRUE	canonical	0	0	junction_7	184.261632008595	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGTGTTTTTGCTGT	NA	False	NA	12	True	ATTAAA	-27	NA	13612126	13686854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ES_00013910	chr13	+	3803	14	FSM	ENSMUSG00000005397.9	ENSMUST00000222142.2	3803	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	206.809290991088	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	13612251	13676049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030
ES_00013911	chr13	+	7795	37	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	70541	-10	21027	10	3prime_fragment	FALSE	canonical	1	1	junction_11	4.49347950086471	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTGTGAATGATGACGA	NA	False	NA	NA	False	AATAAA	-32	NA	13835522	13953398	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_13835759_13838524_13838699_13844424_13844575_13845387_13845526_13847840_13848040_13848914_13849047_13852233_13852850_13853547_13853726_13854657_13854828_13855876_13856108_13857639_13857807_13858542_13858687_13862203_13862396_13871194_13871374_13872911_13873119_13881086_13881264_13882203_13882281_13882606_13882796_13883872_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ES_00013912	chr13	+	1510	11	FSM	ENSMUSG00000019726.13	ENSMUST00000221717.2	2237	11	0	727	0	-727	multi-exon	FALSE	canonical	1	3	junction_7	2.83019433961698	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTACTTTGATTTCAG	NA	False	NA	NA	False	NA	NA	NA	13883935	13921387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156
ES_00013916	chr13	+	2386	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	13	junction_12	55.6334107249312	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129205	14173659	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
ES_00013919	chr13	+	5889	24	FSM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	-25	0	-17	0	multi-exon	FALSE	canonical	3	31	junction_17	12.735494361632	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGATTTTGTTTGTAGA	1411	False	NA	4	True	AATAAA	-18	NA	14238351	14373947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14344503_14344765_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ES_00013920	chr13	+	5782	24	NIC	ENSMUSG00000039219.19	novel	5864	24	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_17	13.4276750581372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGATTTTGTTTGTAGA	1410	False	NA	4	True	AATAAA	-18	NA	14238350	14373947	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14344503_14344657_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ES_00013923	chr13	+	2914	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCGCTAGCAAGTGAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	14804832	14813681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_14804950_14810884
ES_00013926	chr13	+	8217	15	NIC	ENSMUSG00000021318.16	novel	2004	12	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_10	4.81970868795353	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTACTGGATTTCTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	15637814	15904611	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_15637994_15652584_15652750_15722984_15723228_15788363_15788470_15815653_15815860_15818878_15819026_15823105_15823308_15834546_15834761_15835465_15835580_15836974_15837116_15888083_15888234_15889534_15889700_15894639_15894931_15898024_15898353_15899045
ES_00013929	chr13	+	2672	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTAAACAGTCTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	17869997	17873690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_17870406_17871426
ES_00013931	chr13	+	3212	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	-13	0	-9	0	multi-exon	TRUE	canonical	3	419	junction_25	60.5186237990473	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901446	19050981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
ES_00013932	chr13	+	3210	31	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-9	44215	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	115.199387536952	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTCCTAAGGAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	18901446	19095196	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289_19050795_19050816_19050972_19095166
ES_00013933	chr13	+	629	2	FSM	ENSMUSG00000041236.9	ENSMUST00000222010.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGTTCCTGGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	19007964	19012319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_19008048_19011773
ES_00013934	chr13	+	3265	21	FSM	ENSMUSG00000021314.14	ENSMUST00000003345.10	3367	21	102	0	-44	0	multi-exon	FALSE	canonical	3	40	junction_16	8.61669890387264	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTTTTTCAAGAGTG	NA	False	NA	19	True	AATAAA	-24	NA	19132476	19335091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ES_00013935	chr13	+	3224	21	FSM	ENSMUSG00000021314.14	ENSMUST00000200466.5	3224	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_16	10.4957134107215	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTACATGGGTTCTTTT	NA	False	NA	10	True	AATAAA	-15	NA	19132520	19335082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ES_00013938	chr13	+	3875	22	FSM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	-151	1740	-128	-1740	multi-exon	FALSE	canonical	2	20	junction_15	9.13863990039136	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGCCCCTCCAGACTTC	NA	False	NA	93	True	NA	NA	NA	20274637	20790783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ES_00013939	chr13	+	2557	7	NIC	ENSMUSG00000041112.18	novel	3748	5	NA	NA	-16	-1822	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	14.4308696896618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGTGTTTTGATTTAG	NA	False	NA	11	True	AATAAA	-21	NA	20656879	20790701	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_20657458_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ES_00013941	chr13	+	1761	10	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74217	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	23.4936292914473	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGGCATAATTGTGTC	NA	False	NA	25	True	AATAAA	-18	NA	21120585	21208424	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
ES_00013947	chr13	+	1938	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	2	2465	2	0	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21546991	21553994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
ES_00013948	chr13	+	2241	4	NIC	ENSMUSG00000036721.15	novel	2270	5	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	22.9927524813074	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21546991	21553994	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_21547346_21547749_21548222_21550784_21550927_21552721
ES_00013950	chr13	+	1925	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTAGAATTTGAAGTAG	NA	False	NA	NA	False	TTTAAA	-27	NA	21679391	21681316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_21679400_21681300
ES_00013958	chr13	+	3048	6	FSM	ENSMUSG00000006720.17	ENSMUST00000102978.8	3198	6	-18	168	0	8	multi-exon	FALSE	canonical	3	46	junction_1	13.42236938845	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCATGGCTCTACA	NA	False	NA	NA	False	CATAAA	-21	NA	22129263	22144781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
ES_00013962	chr13	+	461	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	-16	18	-16	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTTTAAAGAGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	22227367	22227828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_22227400_22227800
ES_00013970	chr13	+	393	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	-22	767	-22	-767	mono-exon	FALSE	NA	NA	NA	NA	NA	721	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTCTCACTTAAAGGAGC	1891	False	NA	4	True	NA	NA	NA	23765558	23765951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23765600_23766000
ES_00013995	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148733	34169629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ES_00013997	chr13	+	4828	12	Fusion	ENSMUSG00000091462.3_ENSMUSG00000021408.16	novel	3266	11	NA	NA	-8	256	multi-exon	FALSE	canonical	3	30	junction_11	5.53277238352834	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCTTTCAGCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	34186374	34219275	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_34186690_34193583_34193804_34194527_34194685_34197232_34197371_34199108_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478_34217402_34217425
ES_00014000	chr13	+	1307	7	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	73.9316501160963	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221634	34258057	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_34221862_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ES_00014001	chr13	+	1031	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTAGTGTTCCTGTTTGC	NA	False	NA	13	True	AATAAA	-15	NA	34221632	34258055	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ES_00014002	chr13	+	485	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	-11	0	-11	0	multi-exon	FALSE	canonical	3	173	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346935	34362151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_34347233_34361963
ES_00014004	chr13	+	7830	15	FSM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	14	0	14	0	multi-exon	FALSE	canonical	3	139	junction_7	21.2239035437088	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059298	35090047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
ES_00014006	chr13	+	4581	18	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_16	46.1771075265176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059486	35090047	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35087257_35088026_35088073_35089865
ES_00014008	chr13	+	5439	17	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	27	junction_15	45.9563311742789	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACTACTTAATAGGAAG	NA	False	NA	-33	True	NA	NA	NA	35059593	35090000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35087257_35087512_35088073_35089865
ES_00014012	chr13	+	3184	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2859	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	35922436	36058041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ES_00014013	chr13	+	3246	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2847	-1	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACACATTGGGAGTGTTTC	NA	False	NA	12	True	AATAAA	-42	NA	35922448	36058040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ES_00014014	chr13	+	3593	7	FSM	ENSMUSG00000059288.15	ENSMUST00000163595.3	3575	7	-18	0	-18	0	multi-exon	FALSE	canonical	3	72	junction_1	71.2031522398334	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	35925277	36058041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_35925872_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ES_00014015	chr13	+	3684	8	NIC	ENSMUSG00000059288.15	novel	3575	7	NA	NA	-28	1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	99.7803710605427	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGAGTGTTTCTCTGCGT	NA	False	NA	19	True	AATAAA	-20	NA	35925267	36058047	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_35925872_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ES_00014016	chr13	+	2425	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	90724	-3	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	80.650852444348	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACACATTGGGAGTGTT	NA	False	NA	10	True	AATAAA	-40	NA	36037518	36058038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_36037615_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ES_00014021	chr13	+	8488	13	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-174	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_12	31.2901963702513	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38009776	38135970	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131481_38132618
ES_00014022	chr13	+	8705	13	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-232	0	combination_of_known_junctions	TRUE	canonical	3	43	junction_10	24.8678451463375	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38009718	38135970	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131640_38132618
ES_00014023	chr13	+	7437	10	FSM	ENSMUSG00000039087.18	ENSMUST00000110238.10	7437	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	27.5053305720281	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCTACCATTTTCTTA	NA	False	NA	NA	False	ATTAAA	-33	NA	38010013	38119521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533
ES_00014025	chr13	+	1464	4	FSM	ENSMUSG00000021428.10	ENSMUST00000224962.2	1464	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	4.49691252107735	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGGTAGTTTGCATTC	NA	False	NA	12	True	AATAAA	-13	NA	38240648	38245403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_38241233_38242663_38242718_38243915_38244069_38244730
ES_00014028	chr13	+	876	6	FSM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	-5	0	-5	0	multi-exon	FALSE	canonical	3	20	junction_5	91.8267934755429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACGTTAGAATGATCT	NA	False	NA	NA	False	AATACA	-40	NA	38388908	38399406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399039
ES_00014031	chr13	+	3552	9	NIC	ENSMUSG00000021431.16	novel	6689	8	NA	NA	-42	0	intron_retention	FALSE	canonical	1	67	junction_6	66.5450974903486	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTTTGAAGTGCTGTG	NA	False	NA	23	True	ATTAAA	-24	NA	38388871	38411639	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ES_00014036	chr13	+	4353	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	-428	4	-428	0	multi-exon	FALSE	canonical	3	51	junction_1	65	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGGAATAGTGGATATT	NA	False	NA	15	True	AATAAA	-20	NA	41040240	41114363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_41041762_41107051_41107148_41111627
ES_00014037	chr13	+	4037	3	FSM	ENSMUSG00000021360.17	ENSMUST00000067778.8	4038	3	1	0	1	0	multi-exon	FALSE	canonical	3	123	junction_1	29	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	20	True	AATAAA	-25	NA	41071077	41114368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_41072278_41107051_41107148_41111627
ES_00014049	chr13	+	1476	9	NIC	ENSMUSG00000054021.7	novel	1367	8	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	9	True	ATTAAA	-21	NA	43519098	43548678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ES_00014056	chr13	+	5664	19	FSM	ENSMUSG00000038518.16	ENSMUST00000044608.14	5019	19	0	-645	0	0	multi-exon	FALSE	canonical	3	65	junction_1	177.530035712966	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCTGTCTTGTGGGAA	9933	False	NA	13	True	AATAAA	-15	NA	44884298	45075116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_44884411_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ES_00014057	chr13	+	6017	18	FSM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	-22	2	-22	1	multi-exon	FALSE	canonical	3	632	junction_5	80.8182205637225	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGTCTTGTGGGAAG	NA	False	NA	14	True	AATAAA	-16	NA	44884724	45075117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ES_00014066	chr13	+	3723	5	FSM	ENSMUSG00000069237.9	ENSMUST00000099547.4	3664	5	-59	0	-59	0	multi-exon	FALSE	canonical	3	172	junction_4	10.8972473588517	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCAACAGTGTTGTCTG	NA	False	NA	7	True	AATAAA	-7	NA	46822938	46831532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
ES_00014072	chr13	+	6320	7	FSM	ENSMUSG00000037933.17	ENSMUST00000048544.14	6309	7	-11	0	-11	0	multi-exon	FALSE	canonical	3	26	junction_2	11.1616904335021	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	1417	False	NA	11	True	AATAAA	-18	NA	49495049	49540495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518
ES_00014073	chr13	+	4658	8	FSM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	-77	7	-66	0	multi-exon	FALSE	canonical	3	26	junction_2	11.2213353638031	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	1362	False	NA	11	True	AATAAA	-18	NA	49494994	49540495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49538446
ES_00014078	chr13	+	4631	17	FSM	ENSMUSG00000021392.9	ENSMUST00000221142.2	4381	17	-251	1	8	0	multi-exon	FALSE	canonical	3	10	junction_1	40.4735639028737	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGTCTTTTATTTAAAA	NA	False	NA	22	True	ATTAAA	-15	NA	49806563	49832491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49807159_49807826_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ES_00014081	chr13	+	4331	34	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	41	junction_14	369.821424655289	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835666	49887743	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861885_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ES_00014093	chr13	+	3327	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	0	1	0	-1	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGGCTATTGTGATCT	5494	False	NA	7	True	AATAAA	-19	NA	51805732	51838079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ES_00014094	chr13	+	1915	7	FSM	ENSMUSG00000035139.15	ENSMUST00000110044.2	1915	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	16.121069719125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATCACATGATACTAC	5538	False	NA	NA	False	AGTAAA	-17	NA	51805776	51820292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307
ES_00014095	chr13	+	2911	17	NNC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	0	-154	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_13	48.5109121100604	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATTTGTAGATTTCAG	5538	False	NA	NA	False	CATAAA	-41	NA	51805776	51837926	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_51805857_51806642_51806792_51808531_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51832918_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ES_00014097	chr13	+	2642	11	NNC	ENSMUSG00000035139.15	novel	784	3	NA	NA	-11188	-3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	44.4886502380101	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCAGGCTATTGTGAT	4914	False	NA	5	True	AATAAA	-17	NA	51822580	51838077	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_51823075_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ES_00014098	chr13	+	2976	3	FSM	ENSMUSG00000035139.15	ENSMUST00000153877.2	784	3	-1619	-573	421	18	multi-exon	FALSE	canonical	3	152	junction_1	20	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGTGAGTGGTATCAGTC	613	False	NA	26	True	AATAAA	-38	NA	51834189	51838098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_51836191_51836479_51836670_51837313
ES_00014101	chr13	+	5363	14	FSM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	22.2489943925403	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTACGGATGCAGAC	NA	False	NA	NA	False	AATAAA	-22	NA	52737208	52802828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ES_00014102	chr13	+	2519	13	FSM	ENSMUSG00000021457.15	ENSMUST00000118756.8	2519	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	27.5650745207288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCTCTGAGCCAATTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	52737472	52797650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
ES_00014112	chr13	+	4334	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	-12	0	-12	0	multi-exon	TRUE	canonical	0	0	junction_3	132.701770900015	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769584	54811876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ES_00014113	chr13	+	1771	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	-23	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769613	54809399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ES_00014124	chr13	+	3540	7	NIC	ENSMUSG00000021481.12	novel	3333	7	NA	NA	4	235	intron_retention	FALSE	canonical	3	20	junction_4	17.8013732304249	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAATAGTCTGTCTTTGT	95	False	NA	NA	False	AATAAA	-30	NA	55253215	55282873	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270094_55270329_55278346_55278441_55280119
ES_00014129	chr13	+	12806	23	FSM	ENSMUSG00000021488.9	ENSMUST00000099490.3	12784	23	-22	0	-22	0	multi-exon	FALSE	canonical	3	116	junction_1	35.1453887033198	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTTGCCCTGTGTTTT	NA	False	NA	15	True	AGTAAA	-18	NA	55357572	55466138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55357689_55361016_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
ES_00014130	chr13	+	900	6	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	91.9469412215545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55357607	55388660	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ES_00014132	chr13	+	1001	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	91.9469412215545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359631	55388660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ES_00014133	chr13	+	12242	24	NIC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-113	0	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	35.0361951650663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTTGCCCTGTGTTTT	NA	False	NA	15	True	AGTAAA	-18	NA	55359518	55466138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
ES_00014135	chr13	+	866	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224693.2	852	6	-14	0	-9	0	multi-exon	FALSE	canonical	3	16	junction_1	114.325150338847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359873	55388660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55359921_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ES_00014137	chr13	+	2644	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	4034	False	NA	18	True	NA	NA	NA	55468312	55473085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ES_00014141	chr13	+	3315	16	FSM	ENSMUSG00000074886.12	ENSMUST00000099482.5	2169	16	0	-1146	0	0	multi-exon	FALSE	canonical	3	190	junction_15	75.6883669323687	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCCTGCCTCCTTTT	116	False	NA	23	True	AATACA	-25	NA	55593273	55608735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607145
ES_00014148	chr13	+	5723	23	NIC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-33	17	intron_retention	FALSE	canonical	3	86	junction_19	66.2512279630466	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTGAATGCTTTGTCT	NA	False	NA	25	True	AATAAA	-32	NA	55782806	55829086	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821928_55823708_55823928_55824582_55824728_55825333_55825408_55826596
ES_00014152	chr13	+	4504	4	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	0	28607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	97.112763779479	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCAAAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	55840936	55879920	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55841161_55846885_55848033_55848207_55851307_55879886
ES_00014155	chr13	+	546	4	FSM	ENSMUSG00000021496.13	ENSMUST00000124968.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	31.7210060089875	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875180	55924643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
ES_00014156	chr13	+	397	3	NIC	ENSMUSG00000021496.13	novel	546	4	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	152	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875197	55924643	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55875288_55923179_55923261_55924417
ES_00014157	chr13	+	3374	8	FSM	ENSMUSG00000021509.6	ENSMUST00000021971.6	3374	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.84919816723071	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTGCATCTGTCTTACC	NA	False	NA	36	True	AATAAA	-26	NA	56586167	56622052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56619742
ES_00014163	chr13	+	6807	7	FSM	ENSMUSG00000021540.17	ENSMUST00000109876.8	4570	7	182	-2419	168	2	multi-exon	FALSE	canonical	3	10	junction_1	28.5856413062378	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTTTGTTTATTTTCTT	NA	False	NA	15	True	AATAAA	-19	NA	56851046	56890192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_56851390_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
ES_00014166	chr13	+	1478	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	-16	0	-11	0	multi-exon	FALSE	canonical	3	143	junction_3	23.6220236220354	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGTCTTTATACTTTA	NA	False	NA	NA	False	NA	NA	NA	58305451	58312507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
ES_00014167	chr13	+	3594	3	FSM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	177.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCGTGGTCATGG	NA	False	NA	5	True	NA	NA	NA	58550061	58558958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_58550332_58554815_58554905_58555723
ES_00014169	chr13	+	3452	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	51	-1056	51	0	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCGTGGTCATGGTGTC	NA	False	NA	9	True	NA	NA	NA	58550564	58558962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
ES_00014170	chr13	+	4212	2	FSM	ENSMUSG00000035367.10	ENSMUST00000224479.2	4212	2	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAAAGAATGTTTATA	NA	False	NA	20	True	AATAAA	-33	NA	58552879	58557910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_58554905_58555723
ES_00014172	chr13	+	2051	8	FSM	ENSMUSG00000021555.16	ENSMUST00000225670.2	2051	8	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_6	94.0208400693534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAAGTGTTTTGGTGATT	1335	False	NA	NA	False	NA	NA	NA	59733233	59757262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755246_59755958
ES_00014173	chr13	+	646	3	FSM	ENSMUSG00000021555.16	ENSMUST00000163521.2	674	3	0	28	0	-28	multi-exon	FALSE	canonical	3	837	junction_1	54.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTCCAGGCAGGGTTGT	9511	False	NA	NA	False	NA	NA	NA	59743172	59748049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59743197_59745853_59745969_59747542
ES_00014174	chr13	+	754	7	FSM	ENSMUSG00000021555.16	ENSMUST00000171391.8	754	7	0	0	0	0	multi-exon	FALSE	canonical	3	661	junction_2	35.6623829203203	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTGTTGAAACAGGAGCC	NA	False	NA	NA	False	NA	NA	NA	59757195	59773262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232
ES_00014176	chr13	+	5510	26	FSM	ENSMUSG00000021559.15	ENSMUST00000077453.13	5491	26	-19	0	-9	0	multi-exon	TRUE	canonical	3	41	junction_19	8.36334861165072	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGACCCCCCCCCCCCCA	9812	False	NA	NA	False	NA	NA	NA	60749751	60910615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_60749925_60750238_60750411_60844044_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867924_60867971_60869587_60869678_60870833_60870927_60873110_60873231_60873629_60873729_60874375_60874475_60876241_60876341_60877190_60877389_60878638_60878837_60884057_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448
ES_00014182	chr13	+	609	2	Intergenic	novelGene_1079	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	14	junction_1	0	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTTCAGGTAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	61849008	61935201	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_61849068_61934651
ES_00014186	chr13	+	381	1	Intergenic	novelGene_1081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGAGCTCACGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	61894903	61895284	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_61894900_61895300
ES_00014188	chr13	+	1948	6	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	-20865	478	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	68.4438455962258	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTTTAAAACCAGTCGT	NA	False	NA	NA	False	NA	NA	NA	61987764	62009967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_61987915_62005782_62005910_62006094_62006156_62007517_62008042_62008125_62008366_62009121
ES_00014189	chr13	+	2553	5	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	-20798	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	69.5215793836705	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTTTAAAACCAGTCGT	NA	False	NA	NA	False	NA	NA	NA	61987831	62009967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_61987915_62005782_62005910_62006094_62006156_62007517_62009074_62009241
ES_00014194	chr13	+	1740	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	126.709066368591	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAAGGCTTTTCCCAATA	NA	False	NA	NA	False	NA	NA	NA	62163797	62198800	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62197252_62197839
ES_00014198	chr13	+	908	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245561	62259791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ES_00014200	chr13	+	373	4	FSM	ENSMUSG00000074867.5	ENSMUST00000222809.2	355	4	-18	0	-4	0	multi-exon	FALSE	canonical	3	7	junction_3	23.7954243967663	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAGGAGTGGACTTTGC	NA	False	NA	NA	False	NA	NA	NA	62277695	62381108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62277843_62351245_62351373_62351567_62351629_62381070
ES_00014201	chr13	+	3141	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	-54	-516	-24	516	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTGTGTGTGGACCAG	NA	False	NA	NA	False	NA	NA	NA	62277675	62321749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
ES_00014204	chr13	+	3378	4	FSM	ENSMUSG00000074867.5	ENSMUST00000221618.2	449	4	0	-2929	0	1924	multi-exon	FALSE	canonical	3	20	junction_3	4.92160768674447	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCAACCTCAGTGAC	NA	False	NA	NA	False	NA	NA	NA	62367369	62385882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62367452_62381070_62381198_62381382_62381444_62382774
ES_00014206	chr13	+	1508	4	NNC	ENSMUSG00000113081.2	novel	452	3	NA	NA	25	278	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	193.294823750893	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGGCCCGTTGTTTAT	NA	False	NA	14	True	AATAAA	-16	NA	62411404	62423345	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_62411510_62420579_62420707_62420906_62420968_62422130
ES_00014216	chr13	+	1906	1	FSM	ENSMUSG00000021458.18	ENSMUST00000221108.2	1599	1	-294	-13	-276	7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTGCTTAGAGGTGGAC	NA	False	NA	39	True	AATAAA	-39	NA	63448792	63450698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_63448800_63450700
ES_00014219	chr13	+	4614	19	FSM	ENSMUSG00000021470.20	ENSMUST00000238465.2	4614	19	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_14	17.5231768921923	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGACGTGCCATTAAC	NA	False	NA	NA	False	NA	NA	NA	63963288	64047317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839_64016993_64018502_64018584_64019609_64020742_64025192_64025348_64042451_64042634_64046347
ES_00014223	chr13	+	4885	7	FSM	ENSMUSG00000021476.10	ENSMUST00000221904.2	4903	7	18	0	18	0	multi-exon	FALSE	canonical	3	144	junction_5	8.22090830342568	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCTTATTCATTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	64309655	64334351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64332573_64333086
ES_00014243	chr13	+	2571	4	NNC	ENSMUSG00000113870.2	novel	327	2	NA	NA	-9771	-298	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	25.381533094402	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAATGGGCCTCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	65787600	65797865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_65787705_65794023_65794151_65794350_65794412_65795586
ES_00014255	chr13	+	1362	4	FSM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	-14	-779	-14	779	multi-exon	FALSE	canonical	3	110	junction_1	62.055530687352	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGGAAAGACTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	66180008	66188840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_66180131_66186206_66186334_66186533_66186595_66187788
ES_00014256	chr13	+	3255	4	FSM	ENSMUSG00000095909.3	ENSMUST00000238623.2	1525	4	-41	-1689	-41	1321	multi-exon	FALSE	canonical	3	113	junction_1	62.9620697104393	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66261252	66271971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026
ES_00014257	chr13	+	3171	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-41	1321	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	91.7234293951115	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66261252	66271971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269528_66269611
ES_00014258	chr13	+	1175	6	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-41	1836	multi-exon	FALSE	canonical	3	19	junction_4	47.642837866777	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAGAATTCGTGGTCATC	NA	False	NA	NA	False	TTTAAA	-20	NA	66261252	66327750	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66327712
ES_00014264	chr13	+	533	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47329	25	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	22.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439412	66453252	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66439588_66448255_66448445_66453083
ES_00014272	chr13	+	1081	3	Antisense	novelGene_ENSMUSG00000114262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	40	junction_2	38	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAAGAACGTTGAATGGA	7075	False	NA	NA	False	NA	NA	NA	66736904	66745147	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_66737350_66744311_66744439_66744638
ES_00014273	chr13	+	2725	4	Antisense	novelGene_ENSMUSG00000114262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_3	41.9841239835568	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCGTTTCTTGTGAGCCT	7075	False	NA	NA	False	NA	NA	NA	66736904	66747945	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_66737350_66744311_66744439_66744638_66744700_66745853
ES_00014279	chr13	+	3238	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	-5	191	-5	84	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAAGTGTATGCAGGG	7853	False	NA	NA	False	GGGGCT	-45	NA	67080888	67146274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
ES_00014280	chr13	+	862	3	FSM	ENSMUSG00000021518.5	ENSMUST00000224175.2	862	3	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_2	16	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTAAGTCTTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	67141531	67145269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67142086_67143410_67143481_67145031
ES_00014286	chr13	+	4047	1	FSM	ENSMUSG00000090659.10	ENSMUST00000180507.2	3963	1	65	-149	65	149	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGTGTAGTCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	67934140	67938187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67934100_67938200
ES_00014288	chr13	+	523	1	FSM	ENSMUSG00000097906.2	ENSMUST00000180422.2	955	1	303	129	303	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGCTGCCCCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	67958667	67959190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67958700_67959200
ES_00014289	chr13	+	751	2	Genic_Genomic	ENSMUSG00000097906.2	novel	955	1	NA	NA	303	35027	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAACACAGTTTAGAAT	NA	False	NA	NA	False	NA	NA	NA	67958667	67994346	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_67959385_67994312
ES_00014295	chr13	+	2681	7	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	7	9	combination_of_known_junctions	FALSE	canonical	3	16	junction_4	59.418478233253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCCGTCTTGTTTTTAAG	NA	False	NA	NA	False	AATAAA	-24	NA	68730401	68740407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
ES_00014299	chr13	+	897	6	FSM	ENSMUSG00000021595.19	ENSMUST00000136932.3	897	6	0	0	0	0	multi-exon	FALSE	canonical	3	1890	junction_1	61.6908421080471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATGATAACTGGAGCTG	NA	False	NA	NA	False	NA	NA	NA	69769429	69777748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653
ES_00014305	chr13	+	923	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGAGTAGTAGTGTTCT	NA	False	NA	13	True	ATTAAA	-26	NA	73479106	73480297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_73479211_73479478
ES_00014306	chr13	+	680	2	FSM	ENSMUSG00000021607.10	ENSMUST00000222030.2	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTACCATATGCAGC	NA	False	NA	NA	False	NA	NA	NA	73479144	73480090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_73479213_73479478
ES_00014308	chr13	+	3588	13	FSM	ENSMUSG00000021608.16	ENSMUST00000123766.8	3532	13	-14	-42	-14	42	multi-exon	FALSE	canonical	0	0	junction_1	170.128301257871	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTGTCACTCACGGGA	NA	False	NA	65	True	AATAAA	-16	NA	73615301	73664583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_73615637_73637005_73637221_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
ES_00014314	chr13	+	4328	16	FSM	ENSMUSG00000021611.10	ENSMUST00000022104.9	4313	16	-15	0	-10	0	multi-exon	FALSE	canonical	3	21	junction_2	5.35163526410386	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTCATACTAATTCG	2113	False	NA	NA	False	AATAAA	-16	NA	73775019	73797962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_73775368_73775469_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
ES_00014319	chr13	+	2428	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	-27	6	0	0	multi-exon	TRUE	canonical	3	92	junction_6	21.3306248280625	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATCACCCCGTCCGCT	NA	False	NA	23	True	AATAAA	-20	NA	74085929	74109008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ES_00014321	chr13	+	2492	16	NIC	ENSMUSG00000057649.7	novel	2407	16	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_6	34.8873743478768	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085931	74109014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ES_00014325	chr13	+	2694	4	FSM	ENSMUSG00000021578.18	ENSMUST00000160021.8	2682	4	-12	0	-4	0	multi-exon	FALSE	canonical	3	9	junction_3	196.493143787654	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACTGCATTGGCCTGGT	4346	False	NA	NA	False	NA	NA	NA	74498423	74510820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74498528_74500974_74501106_74504574_74504937_74508723
ES_00014341	chr13	+	5334	44	FSM	ENSMUSG00000033991.10	ENSMUST00000091466.4	5381	44	47	0	47	0	multi-exon	FALSE	canonical	3	133	junction_18	33.3040145082969	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTTTTAAATTTTTTT	NA	False	NA	NA	False	AAGAAA	-39	NA	76246899	76336102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718
ES_00014343	chr13	+	2344	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	-14	-214	-14	4	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTACATTTGTGAAACT	NA	False	NA	7	True	ATTAAA	-20	NA	76328529	76338439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ES_00014352	chr13	+	4113	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	-12	0	-12	0	multi-exon	TRUE	canonical	3	173	junction_5	15.8461995701281	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGGCAGTTTATTTGA	NA	False	NA	30	True	AATAAA	-30	NA	81031516	81044161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
ES_00014363	chr13	+	2650	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	-18	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	68.3415099589633	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370414	84443989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ES_00014366	chr13	+	2482	11	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	71.7933840963079	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370418	84443989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ES_00014370	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337595	85361029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ES_00014381	chr13	+	5554	9	FSM	ENSMUSG00000007617.19	ENSMUST00000060490.11	2765	9	-1471	-1318	-69	-21	multi-exon	FALSE	canonical	3	36	junction_8	6.10199762372946	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGGTTTTATAAGTAT	NA	False	NA	-14	True	TTTAAA	-15	NA	93440195	93541616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93524031_93524189_93528198_93528310_93529535_93529617_93538548
ES_00014383	chr13	+	534	1	FSM	ENSMUSG00000113237.2	ENSMUST00000223297.2	348	1	-129	-57	-129	57	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATGTTTCTATGTAATC	NA	False	NA	NA	False	AATAAA	-34	NA	93584866	93585400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_93584900_93585400
ES_00014384	chr13	+	4348	4	FSM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	5.35412613473634	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTCAAGTTTGTTGGC	2226	False	NA	9	True	ATTAAA	-18	NA	94194303	94331917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_94194415_94257284_94257344_94310530_94311147_94328355
ES_00014387	chr13	+	413	5	FSM	ENSMUSG00000021686.7	ENSMUST00000221206.2	413	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	203.313028357752	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCATCAACACCGAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	94668513	94702191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_94668575_94679286_94679385_94684262_94684402_94701672_94701709_94702112
ES_00014391	chr13	+	1894	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95461744	95474349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_95461853_95472563
ES_00014396	chr13	+	5284	17	FSM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	0	1	0	-1	multi-exon	FALSE	canonical	3	32	junction_10	9.39081998549647	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTTGATTTGTTTTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	96679242	96776674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
ES_00014400	chr13	+	4547	13	FSM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_9	17.0739811799514	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCAGTCTTCTCTGTGT	8717	False	NA	14	True	AATAAA	-20	NA	97208150	97266023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_97208220_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
ES_00014401	chr13	+	1837	16	FSM	ENSMUSG00000021666.17	ENSMUST00000161913.8	1829	16	-8	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	32.7972898609355	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACATCTCACATATACA	NA	False	NA	NA	False	AATAAA	-19	NA	97274484	97304999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773
ES_00014403	chr13	+	696	5	FSM	ENSMUSG00000021666.17	ENSMUST00000161929.8	696	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	100.14614321081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATACACAAGATCATTGGG	NA	False	NA	NA	False	NA	NA	NA	97274515	97282803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_97274909_97278434_97278519_97279515_97279601_97282154_97282213_97282727
ES_00014405	chr13	+	3396	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	-632	0	632	multi-exon	FALSE	canonical	3	54	junction_2	70.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGTGATAATTCTGAAA	NA	False	NA	18	True	AATACA	-17	NA	97619208	97634147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_97619286_97619456_97619541_97630912
ES_00014406	chr13	+	2844	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
ES_00014407	chr13	+	3849	3	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	38	632	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	71.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGTGATAATTCTGAAA	NA	False	NA	18	True	AATACA	-17	NA	97619246	97634147	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_97619286_97629663_97630239_97630912
ES_00014408	chr13	+	2970	6	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	71.9127248823183	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_97619286_97619456_97619541_97625686_97625857_97629663_97629744_97630912_97631962_97632005
ES_00014412	chr13	+	2331	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	-3	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	24.7839645327212	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399698	98410426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
ES_00014414	chr13	+	1755	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399749	98410426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ES_00014415	chr13	+	779	2	FSM	ENSMUSG00000048603.9	ENSMUST00000132488.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGGCTGAGAGGCCTT	NA	False	NA	NA	False	NA	NA	NA	98455213	98458049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_98455654_98457710
ES_00014418	chr13	+	547	1	FSM	ENSMUSG00000062461.8	ENSMUST00000080866.8	447	1	-32	-68	-32	68	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTTATTTCTGATTTA	NA	False	NA	NA	False	ATTAAA	-45	NA	99040699	99041246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_99040700_99041200
ES_00014427	chr13	+	1222	3	FSM	ENSMUSG00000078941.10	ENSMUST00000084721.8	1222	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100787850	100792567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_100787954_100790698_100790792_100791541
ES_00014429	chr13	+	1230	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	554	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788114	100792567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_100788226_100790698_100790792_100791541
ES_00014436	chr13	+	3425	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	-9	0	-9	0	multi-exon	FALSE	canonical	3	141	junction_1	34.1	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104315295	104339525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ES_00014438	chr13	+	3121	10	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4492	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	72.45228314783	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTATTCTTAAAATATAAC	NA	False	NA	-31	True	NA	NA	NA	104320097	104339483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_104320173_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ES_00014440	chr13	+	993	10	NIC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	409	junction_5	30.3205101100449	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365465	104386125	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ES_00014441	chr13	+	987	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	139.724685200293	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365468	104386125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_104365511_104367239_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ES_00014445	chr13	+	3361	10	FSM	ENSMUSG00000021692.10	ENSMUST00000223870.2	3338	10	-23	0	0	0	multi-exon	TRUE	canonical	3	551	junction_4	41.347966346456	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCAAGTTTGTGTCTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	107083662	107096732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ES_00014448	chr13	+	2097	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_108181243_108182958_108183103_108183973
ES_00014449	chr13	+	2575	2	FSM	ENSMUSG00000071180.6	ENSMUST00000224361.2	830	2	-684	-1061	-684	0	multi-exon	FALSE	canonical	3	191	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108182260	108185706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_108183103_108183973
ES_00014451	chr13	+	2225	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	3	167	3	-167	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCTCACAAAGCTAGG	NA	False	NA	NA	False	NA	NA	NA	108295267	108331731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ES_00014464	chr13	+	5405	13	FSM	ENSMUSG00000032727.15	ENSMUST00000109272.9	5279	13	-126	0	-126	0	multi-exon	FALSE	canonical	3	88	junction_1	13.5800098183568	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGGTCGTGTGACTAT	NA	False	NA	9	True	AATAAA	-17	NA	111822585	111855130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_111822889_111824361_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848219_111848315_111850774_111850903_111850978_111851122_111851217
ES_00014472	chr13	+	1272	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACAGACCATTCTATA	9708	False	NA	NA	False	NA	NA	NA	112937396	113004176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ES_00014473	chr13	+	1347	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	16	-9	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGGAAGCGTTTGTAGT	9724	False	NA	5	True	AATAAA	-20	NA	112937412	113004419	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ES_00014476	chr13	+	1736	3	FSM	ENSMUSG00000042426.7	ENSMUST00000223866.2	1736	3	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_2	16	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	113064181	113068711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_113064508_113066160_113066235_113067375
ES_00014484	chr13	+	3236	6	NNC	ENSMUSG00000042348.11	novel	1966	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	145	junction_5	95.6652496991462	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCTGACTGACTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	113931128	114293997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239_114292963_114293002
ES_00014495	chr13	+	2551	11	FSM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	70.3985795311241	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTATCTTAAAGAATTTTT	NA	False	NA	46	True	AATAAA	-31	NA	119565457	119594754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ES_00014496	chr13	+	1792	1	FSM	ENSMUSG00000062822.9	ENSMUST00000225292.2	1563	1	-16	-213	-8	213	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGCTTACAGGTTCAGG	NA	False	NA	NA	False	NA	NA	NA	119599295	119601087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_119599300_119601100
ES_00014498	chr13	+	2573	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	-8	0	-8	0	multi-exon	TRUE	canonical	3	76	junction_1	23.5189049253763	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599295	119622653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ES_00014499	chr13	+	3413	14	FSM	ENSMUSG00000062822.9	ENSMUST00000224312.2	3406	14	-7	0	1	0	multi-exon	FALSE	canonical	0	0	junction_2	45.8937543287813	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599312	119622653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_119599656_119601100_119601227_119601815_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ES_00014500	chr13	+	2493	13	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	29.2546292633035	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599312	119622653	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ES_00014503	chr13	+	3245	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ES_00014504	chr13	+	3482	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-18	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTATGCCTGTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	120151981	120169796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ES_00014509	chr13	-	245	1	FSM	ENSMUSG00000113651.2	ENSMUST00000222046.2	1628	1	1339	44	1339	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	7054	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCGAGAACCACCACCTG	NA	False	NA	NA	False	NA	NA	NA	3188773	3188528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3188500_3188800
ES_00014510	chr13	-	8427	20	FSM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	-89	0	-89	0	multi-exon	FALSE	canonical	3	47	junction_10	12.4522356123369	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTCTGTGTGC	NA	False	NA	NA	False	AATAAA	-15	NA	3661197	3616034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3631751_3632194_3634499_3635374_3638297_3638535_3639940_3640649_3644130_3644194_3644292_3644366_3645496_3645601_3646776_3646878_3649651_3649752_3649836_3649857_3649938_3650063_3650191_3650335_3660789
ES_00014511	chr13	-	1079	9	FSM	ENSMUSG00000033799.11	ENSMUST00000222041.2	1969	9	0	890	0	-890	multi-exon	FALSE	canonical	3	49	junction_2	5.56636101955308	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCAGTCCTTATCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3661088	3644078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3644194_3644292_3644366_3645496_3645601_3646776_3646878_3649651_3649752_3649836_3649857_3649938_3650063_3650191_3650335_3660789
ES_00014512	chr13	-	3863	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	0	8	0	-8	multi-exon	FALSE	canonical	3	47	junction_9	50.6888353061239	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTCTTCAAGAGCAGCATT	NA	False	NA	NA	False	AATAAA	-10	NA	3943578	3932025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
ES_00014513	chr13	-	3404	12	FSM	ENSMUSG00000021215.16	ENSMUST00000091853.12	2680	12	42	-766	0	123	multi-exon	FALSE	canonical	3	132	junction_9	26.5501241222916	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAACATTTCTCTCCTGG	NA	False	NA	-7	True	ATTAAA	-23	NA	3968178	3932566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
ES_00014514	chr13	-	1589	1	FSM	ENSMUSG00000113128.2	ENSMUST00000223370.2	1040	1	-552	3	-552	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2686	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCACTTGTCGGCACTT	NA	False	NA	NA	False	ATTAAA	-18	NA	3950800	3949211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3949200_3950800
ES_00014515	chr13	-	1196	9	FSM	ENSMUSG00000021214.15	ENSMUST00000021635.9	1200	9	4	0	4	0	multi-exon	FALSE	canonical	1	1	junction_1	2.27760839478607	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTACTCTTGTGTATGA	NA	False	NA	NA	False	AATAAA	-22	NA	4200649	4182620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_4182836_4185201_4185285_4186600_4186767_4187132_4187243_4192125_4192249_4193216_4193295_4194288_4194406_4195204_4195373_4200513
ES_00014516	chr13	-	3463	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTCTATACTGTGA	NA	False	NA	NA	False	NA	NA	NA	4659173	4640748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
ES_00014517	chr13	-	2680	6	FSM	ENSMUSG00000021196.15	ENSMUST00000131648.8	2680	6	0	0	0	0	multi-exon	FALSE	canonical	3	1227	junction_2	102.634107391257	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTCAAAGATATGTGGCA	9783	False	NA	98	True	NA	NA	NA	6639002	6629803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524
ES_00014518	chr13	-	4145	22	FSM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_15	143.890705562911	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTCAAAGATATGTGGCA	NA	False	NA	98	True	NA	NA	NA	6698813	6629803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ES_00014519	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_7	371.222751277127	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ES_00014520	chr13	-	482	1	FSM	ENSMUSG00000068324.6	ENSMUST00000089635.6	330	1	-81	-71	-81	71	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATACATTGGCACTTAGA	NA	False	NA	NA	False	AATAAA	-45	NA	6713011	6712529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_6712500_6713000
ES_00014521	chr13	-	1015	1	FSM	ENSMUSG00000072421.5	ENSMUST00000159886.2	264	1	7	-758	7	758	mono-exon	FALSE	NA	NA	NA	NA	NA	310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATGGAAAGAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	8340142	8339127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_8339100_8340100
ES_00014522	chr13	-	4525	14	FSM	ENSMUSG00000021147.18	ENSMUST00000021572.11	4526	14	1	0	1	0	multi-exon	FALSE	canonical	3	54	junction_4	12.9902102419544	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	-29	True	ATTAAA	-18	NA	8921079	8853030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
ES_00014524	chr13	-	3781	5	FSM	ENSMUSG00000021147.18	ENSMUST00000176922.8	3780	5	0	-1	0	1	multi-exon	FALSE	canonical	3	80	junction_4	6.36396103067893	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCTGTTACAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	8921059	8900514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
ES_00014526	chr13	-	2515	18	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	0	35057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.753542973484	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTGACCCCAAGATGC	NA	False	NA	NA	False	NA	NA	NA	9046119	8981309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_8981336_9022660_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ES_00014527	chr13	-	615	1	FSM	ENSMUSG00000061988.4	ENSMUST00000071184.4	642	1	-6	33	-6	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCACCATGGGCAAGCC	5043	False	NA	NA	False	AAGAAA	-31	NA	8991019	8990404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_8990400_8991000
ES_00014528	chr13	-	8783	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTTGAGCATTCTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	9046119	9016366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ES_00014529	chr13	-	634	2	FSM	ENSMUSG00000021149.9	ENSMUST00000221534.2	620	2	0	-14	0	14	multi-exon	FALSE	canonical	3	752	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTGGGTGTCATTATC	NA	False	NA	NA	False	NA	NA	NA	9035739	9034787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9035356_9035673
ES_00014532	chr13	-	3957	15	NIC	ENSMUSG00000021156.18	novel	4117	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	65	junction_14	30.2476175482787	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCAGTAAGCTGCTTC	NA	False	NA	3	True	AATAAA	-23	NA	9814480	9734867	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814381
ES_00014533	chr13	-	4135	15	NIC	ENSMUSG00000021156.18	novel	3824	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	39.4736414249679	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCAGTAAGCTGCTTC	NA	False	NA	3	True	AATAAA	-23	NA	9814490	9734867	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814381
ES_00014534	chr13	-	3905	14	NIC	ENSMUSG00000021156.18	novel	3824	15	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	58	junction_13	33.3849698669589	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCAGTAAGCTGCTTC	NA	False	NA	3	True	AATAAA	-23	NA	9814972	9734867	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814763
ES_00014536	chr13	-	4118	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	0	-1	0	1	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCAGTAAGCTGCTTC	NA	False	NA	3	True	AATAAA	-23	NA	9815350	9734867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
ES_00014537	chr13	-	3824	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110634.8	3824	15	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_14	31.2871004259139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAGAGATTGTGGC	NA	False	NA	NA	False	NA	NA	NA	9814992	9735130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814763
ES_00014544	chr13	-	867	8	FSM	ENSMUSG00000021156.18	ENSMUST00000154994.8	867	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	39.4099334831062	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGTACTTTATATTCACA	NA	False	NA	NA	False	TATAAA	-12	NA	9814480	9745168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814381
ES_00014548	chr13	-	261	1	FSM	ENSMUSG00002075551.1	ENSMUST00020182858.1	57	1	0	-204	0	204	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGGAAACAACACCCTTCT	NA	False	NA	NA	False	NA	NA	NA	9884561	9884300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9884300_9884600
ES_00014549	chr13	-	1985	1	FSM	ENSMUSG00000113789.2	ENSMUST00000221565.2	1824	1	-165	4	-165	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTGAAGTTGCCACCAAT	6158	False	NA	NA	False	NA	NA	NA	12194332	12192347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12192300_12194300
ES_00014550	chr13	-	8381	33	FSM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	-82	-5	-64	5	multi-exon	FALSE	canonical	3	145	junction_5	17.0824917221552	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGATGACTTTATATGCAA	5879	False	NA	5	True	AATAAA	-31	NA	12273063	12197592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213931_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
ES_00014551	chr13	-	2124	18	FSM	ENSMUSG00000021311.10	ENSMUST00000221290.2	2124	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	43.0253807769723	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTCATCCAGACAGATG	5943	False	NA	NA	False	NA	NA	NA	12272999	12231765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12265487_12265578_12268649_12268865_12272747
ES_00014552	chr13	-	415	1	FSM	ENSMUSG00000113036.2	ENSMUST00000221517.2	478	1	-3	66	-3	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTCCCTGTAACTCAGC	3783	False	NA	NA	False	NA	NA	NA	12275159	12274744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12274700_12275200
ES_00014553	chr13	-	2868	21	FSM	ENSMUSG00000052374.17	ENSMUST00000064204.14	3013	21	145	0	109	0	multi-exon	FALSE	canonical	0	0	junction_8	25.0365233209405	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGACAAACTTTATTAAG	NA	False	NA	3	True	AATAAA	-29	NA	12355496	12284311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679_12293863_12295314_12295456_12297400_12297510_12303392_12303544_12305559_12305708_12306545_12306777_12309195_12309289_12311360_12311447_12315820_12315903_12319199_12319279_12321159_12321248_12323785_12323873_12324480_12324601_12325732_12325848_12355255
ES_00014554	chr13	-	2737	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	245	-190	0	188	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCCCCCCCATCCCACC	NA	False	NA	NA	False	NA	NA	NA	12476374	12454107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ES_00014556	chr13	-	2062	3	FSM	ENSMUSG00000057554.14	ENSMUST00000133143.2	2062	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	9918	False	NA	-13	True	ATTAAA	-18	NA	12463617	12454297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12455876_12462027_12462194_12463299
ES_00014557	chr13	-	2741	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	8	-13	0	4	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTCTGGAATAGTTTTT	NA	False	NA	-7	True	ATTAAA	-24	NA	12476376	12454291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
ES_00014560	chr13	-	1942	7	FSM	ENSMUSG00000097715.3	ENSMUST00000220758.2	1942	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.7896785917019	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATTTTGTAGAGTTTTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	12665277	12629945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12630739_12632613_12632739_12634654_12634784_12636246_12636397_12638757_12638981_12645583_12645634_12664805
ES_00014564	chr13	-	733	1	FSM	ENSMUSG00000061724.6	ENSMUST00000074863.6	733	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCATCCAGGGCACCA	NA	False	NA	NA	False	NA	NA	NA	13407478	13406745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_13406700_13407500
ES_00014565	chr13	-	4620	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	10	-996	0	0	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	13568199	13532204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ES_00014566	chr13	-	2971	7	FSM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	74.282680798869	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	13568199	13532204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ES_00014567	chr13	-	2351	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCAGACTCCTGACAGC	NA	False	NA	NA	False	AATAAA	-26	NA	13568149	13533019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ES_00014568	chr13	-	1308	1	FSM	ENSMUSG00000113258.2	ENSMUST00000221035.2	1240	1	-264	196	-264	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACCAACATGTAACACAG	NA	False	NA	NA	False	NA	NA	NA	14066848	14065540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14065500_14066800
ES_00014569	chr13	-	1845	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	0	-1	0	0	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTCTCTGCCCTTTCT	NA	False	NA	-4	True	AATAAA	-15	NA	14214223	14172535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ES_00014570	chr13	-	1874	13	FSM	ENSMUSG00000039233.13	ENSMUST00000159239.8	1855	13	0	-19	0	19	multi-exon	FALSE	canonical	3	105	junction_7	16.4519502390041	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTAAATTGGCAGTGTCA	NA	False	NA	NA	False	AAAAAG	-9	NA	14214206	14177629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ES_00014573	chr13	-	4187	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	57	0	-13	0	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATGTTAATTTGCTCA	NA	False	NA	-10	True	TATAAA	-1	NA	14238016	14225243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ES_00014574	chr13	-	3115	5	FSM	ENSMUSG00000021302.11	ENSMUST00000223174.2	870	5	-37	-2208	0	0	multi-exon	FALSE	canonical	3	14	junction_4	114.48007468551	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTGAGATATCCTCT	NA	False	NA	NA	False	NA	NA	NA	14237995	14226429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
ES_00014576	chr13	-	2903	1	FSM	ENSMUSG00000015672.5	ENSMUST00000223530.2	2903	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	14787612	14784709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14784700_14787600
ES_00014580	chr13	-	12917	14	FSM	ENSMUSG00000041297.9	ENSMUST00000042365.9	5202	14	-674	-7041	-228	-39	multi-exon	FALSE	canonical	3	33	junction_2	12.8002403823582	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGTGAATGACATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	17979910	17884938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_17893497_17893940_17894391_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
ES_00014581	chr13	-	12509	14	FSM	ENSMUSG00000041297.9	ENSMUST00000223490.2	12548	14	0	39	0	-39	multi-exon	FALSE	canonical	3	30	junction_2	13.284773505807	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGTGAATGACATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	17979682	17884938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_17893497_17893940_17894211_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
ES_00014583	chr13	-	2685	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	0	3	0	-3	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGGTGTTCATTGATG	NA	False	NA	NA	False	AATAAA	-18	NA	18118824	18055158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
ES_00014584	chr13	-	8744	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_2	27.5	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCGATGTGTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-31	NA	18167934	18155914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_18164368_18166212_18166335_18167765
ES_00014585	chr13	-	1024	2	FSM	ENSMUSG00000075054.6	ENSMUST00000222308.2	1024	2	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTAAATTTTGTTGAG	NA	False	NA	NA	False	AAAAAG	-8	NA	18167913	18165458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_18166335_18167765
ES_00014587	chr13	-	1392	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	0	-1	0	1	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGTGTTGTCTGTATT	NA	False	NA	1	True	AATAAA	-20	NA	19579904	19541844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
ES_00014588	chr13	-	1328	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	-1	0	1	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGTGTTGTCTGTATT	NA	False	NA	1	True	AATAAA	-20	NA	19579965	19541844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ES_00014589	chr13	-	1451	8	FSM	ENSMUSG00000003062.14	ENSMUST00000199278.3	1074	8	-55	-322	-15	0	multi-exon	FALSE	canonical	3	699	junction_7	61.3454587245254	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATTGTGTGTTGTCTG	NA	False	NA	-3	True	AATAAA	-16	NA	19579980	19541848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ES_00014590	chr13	-	1128	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579904	19549125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ES_00014591	chr13	-	2215	1	FSM	ENSMUSG00000105848.2	ENSMUST00000196136.2	2328	1	138	-25	138	25	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGCTCAGGGAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	19579485	19577270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_19577300_19579500
ES_00014592	chr13	-	2371	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	-8	0	8	multi-exon	FALSE	canonical	3	59	junction_2	5.5	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTAAGTCTCATCTTTTA	NA	False	NA	NA	False	AATAAA	-42	NA	19803974	19775867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_19777519_19778616_19778826_19803463
ES_00014594	chr13	-	2788	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGGTTCTTACTTGG	NA	False	NA	1	True	AATAAA	-22	NA	21586831	21571173	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
ES_00014595	chr13	-	2562	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	0	-1	0	1	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGGTTCTTACTTGGGT	NA	False	NA	3	True	AATAAA	-24	NA	21586883	21571171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
ES_00014596	chr13	-	2597	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	0	3	0	-3	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTTGGTTCTTACTT	NA	False	NA	-1	True	AATAAA	-20	NA	21586925	21571175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
ES_00014599	chr13	-	527	1	FSM	ENSMUSG00000079941.2	ENSMUST00000044043.3	390	1	-32	-105	-32	105	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTATGGGTATTTTCCT	NA	False	NA	NA	False	NA	NA	NA	21685620	21685093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21685100_21685600
ES_00014600	chr13	-	567	1	FSM	ENSMUSG00000082396.5	ENSMUST00000118425.2	675	1	-46	154	-46	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAATGTAGAAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	21689272	21688705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21688700_21689300
ES_00014601	chr13	-	8787	6	FSM	ENSMUSG00000063894.16	ENSMUST00000045228.12	8805	6	18	0	18	0	multi-exon	FALSE	canonical	3	13	junction_1	3.97994974842648	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGATTTTTTTGTAA	6569	False	NA	-1	True	NA	NA	NA	21715272	21697391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21705133_21705955_21706080_21706393_21706486_21709307_21709477_21710688_21711192_21715114
ES_00014603	chr13	-	382	1	FSM	ENSMUSG00000094338.2	ENSMUST00000091756.2	381	1	16	-17	16	17	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAACTCAAAGGCTCTTT	817	False	NA	NA	False	NA	NA	NA	21900297	21899915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21899900_21900300
ES_00014607	chr13	-	394	1	FSM	ENSMUSG00000063021.4	ENSMUST00000074752.4	393	1	-27	26	-27	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACCACAAGGCCAAGGGG	NA	False	NA	NA	False	NA	NA	NA	21938024	21937630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21937600_21938000
ES_00014608	chr13	-	792	1	FSM	ENSMUSG00000058773.3	ENSMUST00000080511.3	743	1	0	-49	0	49	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGCTCTGTGAATGTA	NA	False	NA	NA	False	NA	NA	NA	21964795	21964003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21964000_21964800
ES_00014610	chr13	-	412	1	FSM	ENSMUSG00000069309.3	ENSMUST00000091751.3	393	1	-25	6	-25	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGACAATTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	21971413	21971001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21971000_21971400
ES_00014613	chr13	-	436	1	FSM	ENSMUSG00000069302.6	ENSMUST00000091742.6	405	1	9	-40	9	40	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAAGTCCAGAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	22219729	22219293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22219300_22219700
ES_00014615	chr13	-	4844	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTCTCCACTATACTA	9006	False	NA	0	True	AATAAA	-22	NA	23553378	23537272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
ES_00014616	chr13	-	1262	5	FSM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	0	-1	0	0	multi-exon	FALSE	canonical	3	23	junction_4	37.5499667110372	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGCACCGAAGAACTCA	9013	False	NA	NA	False	NA	NA	NA	23553371	23541200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553026
ES_00014617	chr13	-	4341	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	0	115	0	-115	multi-exon	FALSE	canonical	3	221	junction_1	5.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTTGACAACCAGTTT	NA	False	NA	NA	False	TATAAA	-43	NA	23608036	23602645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23606506_23606652_23606853_23607755
ES_00014618	chr13	-	2078	8	FSM	ENSMUSG00000053216.16	ENSMUST00000110432.2	2089	8	11	0	4	0	multi-exon	TRUE	canonical	0	0	junction_7	2.44948974278318	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTGAAGAGCTCTGG	NA	False	NA	NA	False	GATAAA	-27	NA	23673006	23662057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23663012_23664619_23664647_23664736_23664758_23665941_23666116_23666888_23667171_23670298_23670647_23672002_23672133_23672864
ES_00014619	chr13	-	237	1	FSM	ENSMUSG00000069274.4	ENSMUST00000102971.2	391	1	68	86	68	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGCGGTTAAGCTCACCT	9764	False	NA	NA	False	NA	NA	NA	23735754	23735517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23735500_23735800
ES_00014620	chr13	-	647	1	FSM	ENSMUSG00000069272.7	ENSMUST00000102969.6	704	1	45	12	45	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCAGATTCATAAGATT	8859	False	NA	NA	False	AATAAA	-11	NA	23755349	23754702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23754700_23755300
ES_00014621	chr13	-	386	1	FSM	ENSMUSG00000069268.5	ENSMUST00000105106.2	461	1	21	54	21	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCCAAAGGCTCTTTTCA	5859	False	NA	NA	False	NA	NA	NA	23758349	23757963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23758000_23758300
ES_00014622	chr13	-	619	1	FSM	ENSMUSG00000069270.7	ENSMUST00000171127.4	2482	1	-9	1872	-9	-1872	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAAGATTGGTAGTACC	NA	False	NA	NA	False	AGTAAA	-3	NA	23867940	23867321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23867300_23867900
ES_00014625	chr13	-	475	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	87	68	87	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCATGTAAAGTTGCTG	4719	False	NA	-1	True	AAAAAG	-22	NA	23929498	23929023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23929000_23929500
ES_00014626	chr13	-	388	1	FSM	ENSMUSG00000080999.2	ENSMUST00000118168.2	334	1	-57	3	-57	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGATTCAAGTCAAGAAATT	3678	False	NA	NA	False	NA	NA	NA	23930539	23930151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23930200_23930500
ES_00014628	chr13	-	506	1	FSM	ENSMUSG00000069265.3	ENSMUST00000091701.3	534	1	16	12	16	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTTACTCCATCCTTAA	NA	False	NA	NA	False	AGTAAA	-7	NA	23946353	23945847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23945800_23946400
ES_00014630	chr13	-	5149	37	NIC	ENSMUSG00000021338.18	novel	4988	38	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	145	junction_10	17.5664523143855	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGACTTCTTCCAGTTCTT	NA	False	NA	2	True	AATAAA	-19	NA	24464773	24196463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_24197444_24206478_24206620_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564_24283647_24290291_24290362_24292472_24292578_24295792_24295870_24295996_24296075_24299457_24299562_24305821_24305909_24321119_24321215_24323271_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189_24362241_24460439_24460538_24464543
ES_00014631	chr13	-	1319	12	FSM	ENSMUSG00000021338.18	ENSMUST00000142171.2	2350	12	0	1031	0	-1031	multi-exon	FALSE	canonical	3	145	junction_2	19.5591917898229	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGCCCCTGCGGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	24283618	24248559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564
ES_00014632	chr13	-	969	10	FSM	ENSMUSG00000021338.18	ENSMUST00000125420.8	2501	10	0	1532	0	0	multi-exon	FALSE	canonical	3	164	junction_3	14.0405057768278	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTATTTTCTCGAGTAT	NA	False	NA	NA	False	NA	NA	NA	24464773	24323271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189_24362241_24460439_24460538_24464543
ES_00014635	chr13	-	721	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	3	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4817	False	NA	-3	True	AATAAA	-19	NA	25015500	25001930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_25002175_25004697_25004883_25015208
ES_00014637	chr13	-	7009	11	FSM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	26	0	26	0	multi-exon	FALSE	canonical	3	167	junction_5	19.2792634714089	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTGGACATTGTCATT	NA	False	NA	1	True	AATAAA	-17	NA	25204336	25171465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_25177172_25177652_25177767_25178707_25178826_25179327_25179481_25181010_25181128_25182907_25183039_25185609_25185784_25188925_25189039_25190421_25190459_25202502_25202577_25204064
ES_00014639	chr13	-	1064	2	FSM	ENSMUSG00000021339.5	ENSMUST00000224170.2	436	2	0	-628	0	628	multi-exon	FALSE	canonical	3	218	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGAGGGAAGGTTGTGAT	NA	False	NA	NA	False	ATTAAA	-8	NA	25185783	25182148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_25183039_25185609
ES_00014643	chr13	-	4795	1	FSM	ENSMUSG00000076431.5	ENSMUST00000067230.6	4795	1	-1	1	-1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACTTTTGTCATCCT	NA	False	NA	-1	True	AATAAA	-23	NA	29137697	29132902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_29132900_29137700
ES_00014644	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ES_00014647	chr13	-	4696	7	FSM	ENSMUSG00000016477.19	ENSMUST00000221536.2	4597	7	-101	2	-101	-2	multi-exon	FALSE	canonical	3	13	junction_6	42.1689722689826	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTGGATGGATTTT	NA	False	NA	-5	True	AATAAA	-45	NA	30168475	30090559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30168110
ES_00014648	chr13	-	5099	7	FSM	ENSMUSG00000016477.19	ENSMUST00000102948.11	5097	7	0	-2	0	2	multi-exon	FALSE	canonical	3	88	junction_5	17.007351351695	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGATGGATTTTCTTA	NA	False	NA	-1	True	AATAAA	-24	NA	30170046	30090555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169282
ES_00014650	chr13	-	1257	3	NNC	ENSMUSG00000038462.4	novel	1363	2	NA	NA	0	1624	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1031.5	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGAGCATAACATGTAC	NA	False	NA	NA	False	NA	NA	NA	30729345	30722666	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_30722705_30724434_30725325_30729016
ES_00014651	chr13	-	1363	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	-2	True	ATTAAA	-19	NA	30729345	30724290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_30725325_30729016
ES_00014652	chr13	-	4257	28	FSM	ENSMUSG00000021357.15	ENSMUST00000021785.8	4256	28	0	-1	0	1	multi-exon	FALSE	canonical	3	102	junction_19	19.2909994862811	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTTTGTGTCTTCAT	NA	False	NA	-1	True	AATAAA	-21	NA	31158037	30997900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
ES_00014653	chr13	-	777	6	FSM	ENSMUSG00000021357.15	ENSMUST00000220532.2	1441	6	0	664	0	-664	multi-exon	FALSE	canonical	3	115	junction_5	22.6944927240069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGCAAGCCTGAGAGCC	NA	False	NA	NA	False	NA	NA	NA	31158051	31109705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
ES_00014659	chr13	-	1918	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGCAATCCAATAAATTG	4869	False	NA	NA	False	AATAAA	-25	NA	33035168	33026074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
ES_00014661	chr13	-	1325	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089153	34063798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
ES_00014662	chr13	-	1328	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	0	-1	0	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089691	34063798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
ES_00014664	chr13	-	1544	8	NIC	ENSMUSG00000060147.16	novel	1654	8	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	174.090991924877	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTCTGTCTGCCTCAC	8483	False	NA	-1	True	AATAAA	-25	NA	34119955	34101903	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551_34119778_34119904
ES_00014665	chr13	-	1510	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	-6	0	-3	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTCTGTCTGCCTCAC	8459	False	NA	-1	True	AATAAA	-25	NA	34119979	34101903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
ES_00014666	chr13	-	1651	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	0	3	0	-3	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTCTGTCTGCCTCAC	8372	False	NA	-1	True	AATAAA	-25	NA	34120066	34101903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
ES_00014668	chr13	-	1506	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	-5	3	-5	-3	multi-exon	FALSE	canonical	3	10	junction_7	178.591998815222	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTCTGTCTGCCTCAC	NA	False	NA	-1	True	AATAAA	-25	NA	34186782	34101903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
ES_00014671	chr13	-	2182	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTACACACGCTCAGCAA	NA	False	NA	NA	False	NA	NA	NA	34314337	34310730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ES_00014672	chr13	-	6448	10	FSM	ENSMUSG00000038267.16	ENSMUST00000148390.3	5496	10	-807	-145	-76	145	multi-exon	FALSE	canonical	3	13	junction_3	4.97648792812415	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTGCCCTTCTTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	34529241	34362995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34367295_34376138_34376263_34377376_34377410_34379234_34379468_34381784_34381888_34387899_34388028_34405885_34406055_34482979_34483135_34489140_34489245_34528141
ES_00014674	chr13	-	218	2	Antisense	novelGene_ENSMUSG00000021415.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	256	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAATGTTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35130260	35127606	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_35127774_35130209
ES_00014676	chr13	-	1687	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	56.5674512702303	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178106	35161730	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
ES_00014677	chr13	-	1440	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	0	-14	0	14	multi-exon	TRUE	canonical	3	71	junction_9	38.39206450927	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGTTTCGGCAATAGA	NA	False	NA	NA	False	AATAAA	-31	NA	35178127	35161716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
ES_00014678	chr13	-	1761	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	-15	0	14	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGTTTCGGCAATAGA	NA	False	NA	NA	False	AATAAA	-31	NA	35178264	35161716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
ES_00014679	chr13	-	1498	10	NIC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	51.9781530555072	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178101	35161730	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
ES_00014680	chr13	-	1569	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	52.8942574306115	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35178097	35161731	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177812
ES_00014683	chr13	-	1172	9	NNC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	0	59951	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.833983793099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCCACAAAAAGCCAGGAC	NA	False	NA	NA	False	NA	NA	NA	36090327	36017503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_36017541_36080684_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ES_00014684	chr13	-	4383	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	0	-3	0	3	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTGTGTATTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	36090342	36077451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ES_00014685	chr13	-	3269	6	FSM	ENSMUSG00000021418.16	ENSMUST00000174852.2	3269	6	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	23.0338880782207	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36090311	36080694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36087740_36088401_36088547_36090186
ES_00014687	chr13	-	1676	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	0	410	0	-410	multi-exon	FALSE	canonical	3	325	junction_1	9.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCTCCAGGTGACTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	36301509	36162787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_36163891_36276788_36276910_36301057
ES_00014689	chr13	-	9333	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGCCTCCAAAGATGAG	5846	False	NA	NA	False	AATAAA	-18	NA	38178193	38155376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ES_00014692	chr13	-	2820	10	FSM	ENSMUSG00000038991.18	ENSMUST00000035988.16	2843	10	0	23	0	-23	multi-exon	FALSE	canonical	3	973	junction_6	103.236992125933	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAAAATATTCTAAGA	NA	False	NA	NA	False	NA	NA	NA	38712466	38684077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
ES_00014693	chr13	-	1792	6	NNC	ENSMUSG00000038982.11	novel	5634	5	NA	NA	-4	5229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.5404502187271	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	38819072	38771588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_38771620_38786676_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
ES_00014694	chr13	-	1053	5	NNC	ENSMUSG00000001707.9	novel	2553	4	NA	NA	0	56594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	633.421413831266	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	38842986	38771588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_38771619_38829664_38830287_38838971_38839068_38840015_38840217_38842882
ES_00014695	chr13	-	1099	5	NNC	ENSMUSG00000001707.9	novel	2553	4	NA	NA	0	56594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	633.421413831266	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	38843034	38771588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_38771617_38829664_38830287_38838971_38839068_38840015_38840217_38842882
ES_00014696	chr13	-	5560	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	26	48	9	-48	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCACATGCACCAAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	38819059	38782864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
ES_00014697	chr13	-	2555	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	0	-2	0	2	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGGTGACAACCTATCCA	NA	False	NA	NA	False	AATAAA	-23	NA	38843034	38828180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ES_00014698	chr13	-	1938	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	262	16	-25	-16	multi-exon	FALSE	canonical	3	16	junction_6	14.9004929904357	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTGTTATTGAAGAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	39144538	39116131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
ES_00014707	chr13	-	4297	7	FSM	ENSMUSG00000021365.16	ENSMUST00000163623.3	4626	7	268	61	268	-61	multi-exon	FALSE	canonical	1	1	junction_3	1.46249406456535	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGGGTTTCTTTTCCTTG	NA	False	NA	NA	False	ATTAAA	-25	NA	41512455	41463456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_41465647_41467841_41467932_41469249_41470492_41471337_41471440_41471919_41472022_41492052_41492497_41512328
ES_00014708	chr13	-	1554	7	FSM	ENSMUSG00000058022.15	ENSMUST00000121404.8	1602	7	48	0	-20	0	multi-exon	FALSE	canonical	3	17	junction_6	3.97562014729219	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGTTTAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	42001112	41917608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
ES_00014709	chr13	-	812	6	NIC	ENSMUSG00000058022.15	novel	1602	7	NA	NA	23	1	intron_retention	FALSE	canonical	1	2	junction_5	9.2217135067188	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCTTGGGATCTCCTG	NA	False	NA	-34	True	AATAAA	-14	NA	42001069	41918064	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_42000966
ES_00014710	chr13	-	1247	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	2	-3	1	3	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCGTGGCCATGATGTGA	NA	False	NA	-14	True	AGTAAA	-19	NA	43324958	43305212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
ES_00014711	chr13	-	1225	8	FSM	ENSMUSG00000021368.16	ENSMUST00000021797.9	1239	8	18	-4	0	0	multi-exon	FALSE	canonical	1	7	junction_7	94.4833426632246	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	-17	True	AGTAAA	-16	NA	43324959	43305215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
ES_00014714	chr13	-	4341	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	0	-2	0	2	multi-exon	FALSE	canonical	3	180	junction_1	32.5720355519885	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTACAGTGTTTTAAG	NA	False	NA	NA	False	AATAAA	-31	NA	43713637	43691866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
ES_00014717	chr13	-	1363	10	FSM	ENSMUSG00000057531.15	ENSMUST00000072329.15	1362	10	1	-2	1	2	multi-exon	FALSE	canonical	3	444	junction_2	46.8187996428785	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGCAGCTGGTGAGTATA	NA	False	NA	NA	False	AATAAA	-17	NA	45155622	45075552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
ES_00014719	chr13	-	630	1	FSM	ENSMUSG00000078915.3	ENSMUST00000109187.3	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	344	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGCCTGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	45232603	45231973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_45232000_45232600
ES_00014720	chr13	-	6109	22	FSM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	0	0	0	0	multi-exon	TRUE	canonical	3	242	junction_11	30.6722857910241	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACAACCCTTTCTGTTTG	NA	False	NA	-33	True	AATAAA	-1	NA	46881416	46833380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098_46840975_46842534_46842727_46846987_46847594_46850121_46850245_46853124_46853210_46854464_46854564_46855079_46855215_46858115_46858243_46858644_46858692_46861222_46861370_46863104_46863159_46863241_46863287_46863387_46863505_46866108_46866238_46866316_46866457_46867096_46867346_46870576_46870800_46880835
ES_00014722	chr13	-	597	2	FSM	ENSMUSG00000021374.11	ENSMUST00000182156.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTGAAGTCAGATCTGC	NA	False	NA	NA	False	NA	NA	NA	46835428	46834550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_46834719_46834999
ES_00014724	chr13	-	3934	16	FSM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	0	-17	0	9	multi-exon	FALSE	canonical	3	34	junction_2	16.4059609762902	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTCTTTGTTGTTGTT	NA	False	NA	11	True	AATACA	-33	NA	46940114	46902553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988
ES_00014725	chr13	-	4425	19	NIC	ENSMUSG00000021375.12	novel	6866	38	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	15.0882179526826	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTCTTTGTTGTTGTT	NA	False	NA	11	True	AATACA	-33	NA	46947524	46902553	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366
ES_00014726	chr13	-	6875	38	FSM	ENSMUSG00000021375.12	ENSMUST00000056978.8	6866	38	0	-9	0	9	multi-exon	FALSE	canonical	3	23	junction_2	15.6289144110642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTCTTTGTTGTTGTT	NA	False	NA	11	True	AATACA	-33	NA	47083194	46902553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_46904103_46905556_46906349_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952810_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001863_47018294_47018308_47082691_47082783_47083042
ES_00014734	chr13	-	744	7	FSM	ENSMUSG00000021377.16	ENSMUST00000135278.8	744	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	585.902437839839	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGCAAAACA	NA	False	NA	-101	True	AAAAAG	-7	NA	47259677	47242070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_47242092_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
ES_00014736	chr13	-	644	3	NNC	ENSMUSG00000097326.3	novel	672	3	NA	NA	24	-1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCTTTGTATGTGTGAT	NA	False	NA	0	True	ATTAAA	-14	NA	48427336	48425889	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_48426292_48426388_48426533_48427238
ES_00014739	chr13	-	4394	10	FSM	ENSMUSG00000038042.12	ENSMUST00000035824.11	4402	10	0	8	0	-8	multi-exon	TRUE	canonical	3	9	junction_8	3.87138919781874	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACCACTACCCCGTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	48779140	48731355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_48733320_48734230_48734342_48736560_48736747_48739407_48740655_48742595_48742734_48743762_48743882_48744101_48744183_48745961_48746134_48759748_48759837_48778852
ES_00014740	chr13	-	5579	22	FSM	ENSMUSG00000038025.9	ENSMUST00000035540.9	5494	22	-84	-1	-84	1	multi-exon	TRUE	canonical	3	26	junction_1	5.86043268042677	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTCTGTCGTGCTTG	NA	False	NA	1	True	AGTAAA	-24	NA	49024679	48955224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_48957164_48957810_48958199_48958706_48958817_48959300_48959397_48961080_48961353_48966384_48966546_48967178_48967250_48967341_48967521_48969430_48969547_48969910_48970031_48970981_48971342_48971777_48971868_48973015_48973108_48973516_48973624_48974001_48974090_48975006_48975170_48976424_48976612_48979527_48979670_48982261_48982423_48985479_48985595_48988685_48988772_49024143
ES_00014741	chr13	-	5105	18	FSM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_8	31.720775722809	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGGTGTGGCTTTTA	6383	False	NA	-18	True	AATAAA	-21	NA	49121493	49032694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
ES_00014746	chr13	-	811	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	0	-7	0	6	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGAATGTCTTCTCCTTG	NA	False	NA	0	True	ATTAAA	-20	NA	49369502	49356419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
ES_00014749	chr13	-	1250	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	168	0	28	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGGTTGGCAGAATGCT	NA	False	NA	NA	False	CATAAA	-25	NA	49401602	49384165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
ES_00014750	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ES_00014755	chr13	-	638	1	FSM	ENSMUSG00000113521.2	ENSMUST00000222129.2	849	1	73	138	73	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGGGCAATGGTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	51360074	51359436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_51359400_51360100
ES_00014756	chr13	-	4472	17	FSM	ENSMUSG00000021451.17	ENSMUST00000110040.9	4472	17	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_15	57.0268234583516	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCAGCCTTTGCCTTA	NA	False	NA	-4	True	AATAAA	-20	NA	51947709	51855281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51888542_51888607_51917287_51917357_51947532
ES_00014757	chr13	-	4464	16	FSM	ENSMUSG00000021451.17	ENSMUST00000021900.14	4482	16	18	0	18	0	multi-exon	FALSE	canonical	3	95	junction_9	25.4317387005555	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCAGCCTTTGCCTTA	NA	False	NA	-4	True	AATAAA	-20	NA	51947765	51855281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51917287_51917357_51947532
ES_00014758	chr13	-	1342	1	Intergenic	novelGene_1052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTGCTTTGGGTCATGA	NA	False	NA	-5	True	NA	NA	NA	52709735	52708393	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_52708400_52709700
ES_00014759	chr13	-	1320	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083697	52989154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ES_00014760	chr13	-	1648	5	FSM	ENSMUSG00000021460.18	ENSMUST00000120535.8	1647	5	0	-1	0	1	multi-exon	FALSE	canonical	1	5	junction_1	187.838361364233	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTTGGGTAGTGGTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	53083688	53049961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_53051169_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ES_00014761	chr13	-	2627	4	FSM	ENSMUSG00000021460.18	ENSMUST00000119311.8	2627	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	210.944437128727	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGGCTGCTCTCTCA	NA	False	NA	-24	True	AATAAA	-17	NA	53083690	53061080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_53063352_53073036_53073125_53073234_53073303_53083490
ES_00014762	chr13	-	6373	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	20	-3158	0	-7	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCTGTTTGAGGCTGC	NA	False	NA	-31	True	AATAAA	-10	NA	53083697	53061087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
ES_00014764	chr13	-	2031	2	FSM	ENSMUSG00000056749.8	ENSMUST00000071065.8	2026	2	0	-5	0	5	multi-exon	FALSE	canonical	3	64	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTGTTCCACTTGATCG	NA	False	NA	6	True	AATAAA	-24	NA	53135109	53121239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_53123058_53134896
ES_00014766	chr13	-	205	1	Intergenic	novelGene_1053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGAATTTGTGGAGACA	NA	False	NA	NA	False	NA	NA	NA	53443543	53443338	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_53443300_53443500
ES_00014767	chr13	-	2603	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	3	0	3	0	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGTTTGGATAGCAG	1832	False	NA	-18	True	AATAAA	-27	NA	53531430	53486783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
ES_00014770	chr13	-	2345	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	0	-10	0	10	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTACTATCTTTATTCC	NA	False	NA	7	True	AATAAA	-25	NA	54616662	54606639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ES_00014772	chr13	-	2681	10	NNC	ENSMUSG00000025871.19	novel	2727	9	NA	NA	-9	33744	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.539521504728	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATAATTTCCTTGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	54713178	54665286	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_54665316_54699035_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ES_00014773	chr13	-	2662	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	65	0	-14	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713183	54699030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ES_00014774	chr13	-	2502	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713116	54699035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
ES_00014777	chr13	-	1965	4	FSM	ENSMUSG00000025869.12	ENSMUST00000149462.2	677	4	-154	-1134	-40	80	multi-exon	FALSE	canonical	3	1036	junction_1	21.2289111041209	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGACAGCAGTTCATCCT	NA	False	NA	77	True	NA	NA	NA	54737943	54731917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475
ES_00014778	chr13	-	1756	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	-3	True	NA	NA	NA	54737903	54731997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ES_00014780	chr13	-	3950	11	FSM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	0	-9	0	9	multi-exon	FALSE	canonical	3	234	junction_10	160.927934181732	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTCTCTGTGTTCTTT	NA	False	NA	4	True	AATAAA	-37	NA	54835621	54827202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835306
ES_00014781	chr13	-	4303	11	FSM	ENSMUSG00000034928.17	ENSMUST00000125871.8	4292	11	0	-11	0	9	multi-exon	FALSE	canonical	3	163	junction_9	222.59883198256	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTCTCTGTGTTCTTT	NA	False	NA	4	True	AATAAA	-37	NA	54835907	54827202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150_54832302_54835306
ES_00014782	chr13	-	3816	11	FSM	ENSMUSG00000034928.17	ENSMUST00000134862.8	3797	11	0	-19	0	8	multi-exon	FALSE	canonical	3	257	junction_7	149.659480154115	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCTCTCTGTGTTCTT	NA	False	NA	3	True	AATAAA	-36	NA	54841720	54827203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831900_54832150_54832302_54841541
ES_00014783	chr13	-	3820	11	NIC	ENSMUSG00000034928.17	novel	3797	11	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	200.392015809014	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCTGCTCTCTGTGTT	NA	False	NA	0	True	AATAAA	-33	NA	54841663	54827206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150_54832302_54841541
ES_00014784	chr13	-	3754	11	FSM	ENSMUSG00000034928.17	ENSMUST00000037422.16	3734	11	0	-20	0	9	multi-exon	FALSE	canonical	3	393	junction_7	120.344339293546	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTCTCTGTGTTCTTT	NA	False	NA	4	True	AATAAA	-37	NA	54841660	54827202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54841541
ES_00014792	chr13	-	1357	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	0	-6	0	6	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCTAGGCAGGACTGGG	NA	False	NA	5	True	AATAAA	-22	NA	54914408	54906666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
ES_00014794	chr13	-	1692	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	5	-19	0	19	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGAAGTGTTTTTTTTTT	NA	False	NA	NA	False	AATATA	-31	NA	55248108	55176088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ES_00014795	chr13	-	2541	15	FSM	ENSMUSG00000025878.17	ENSMUST00000127195.8	2936	15	18	377	13	38	multi-exon	FALSE	non_canonical	0	0	junction_10	39.2030949423795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTCTGTTTTAAGCTTT	NA	False	NA	NA	False	AATAGA	-18	NA	55248095	55176069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ES_00014796	chr13	-	2609	4	FSM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	4	122	0	-122	multi-exon	FALSE	canonical	3	148	junction_3	8.65383665716478	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGGTCAGTGGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	55248108	55223070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55225341_55233422_55233508_55240939_55241095_55248009
ES_00014798	chr13	-	1173	8	FSM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	0	-5	0	0	multi-exon	FALSE	canonical	3	320	junction_3	95.4118890465364	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	6442	False	NA	-17	True	AATAAA	-19	NA	55469758	55467692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
ES_00014799	chr13	-	1592	5	FSM	ENSMUSG00000034789.9	ENSMUST00000224936.2	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_4	37.1618083521241	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGTAGCTTCTGAACTG	6456	False	NA	-63	True	NA	NA	NA	55469744	55467738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914
ES_00014800	chr13	-	1327	6	FSM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	5.62138772902208	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGTACAGTCTATCACC	6155	False	NA	-7	True	NA	NA	NA	55477571	55472980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081_55477188_55477410
ES_00014801	chr13	-	1742	4	FSM	ENSMUSG00000021485.15	ENSMUST00000146181.8	1742	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	6.23609564462324	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCCTGTCCATGGTTT	6180	False	NA	-3	True	ATTAAA	-12	NA	55477546	55473294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55473712_55473825_55474010_55476182_55477188_55477410
ES_00014802	chr13	-	4310	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	0	5	0	-5	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTAGTGTGAGTTGTGTGC	2839	False	NA	-8	True	NA	NA	NA	55510596	55491650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ES_00014803	chr13	-	2893	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109923.9	2940	14	0	47	0	-47	multi-exon	FALSE	canonical	3	54	junction_13	5.80246835866034	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTAATGGGTCGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	55635924	55621288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55622107_55622268_55622372_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
ES_00014804	chr13	-	2896	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	0	-518	0	3	multi-exon	FALSE	canonical	3	24	junction_2	11.9649389180894	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCCTGCTGCTCTGGGCC	NA	False	NA	NA	False	AATAAA	-17	NA	55635874	55621238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55622107_55622268_55622375_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
ES_00014805	chr13	-	1676	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	25	-4	0	0	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGCCTCCCCGCTTTG	NA	False	NA	-3	True	AATAAA	-19	NA	55661234	55646224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ES_00014806	chr13	-	2081	18	NNC	ENSMUSG00000021494.10	novel	2199	17	NA	NA	0	30949	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.641212656963	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCGGTAGGTTTTGGTC	NA	False	NA	NA	False	NA	NA	NA	55684323	55647273	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_55647304_55678228_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ES_00014807	chr13	-	989	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	17	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661234	55654585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ES_00014808	chr13	-	2187	17	FSM	ENSMUSG00000021494.10	ENSMUST00000021956.9	2205	17	18	0	18	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTCTCACCCACCTG	NA	False	NA	1	True	ATTAAA	-27	NA	55684453	55678222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ES_00014810	chr13	-	835	5	FSM	ENSMUSG00000021494.10	ENSMUST00000224686.2	835	5	0	0	0	0	multi-exon	FALSE	canonical	3	646	junction_4	22.5222112591104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCCGAGGAGAAGGGAGA	NA	False	NA	NA	False	NA	NA	NA	55684334	55683101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55683239_55683371_55683433_55683542_55683618_55683698_55684220_55684293
ES_00014811	chr13	-	705	5	FSM	ENSMUSG00000021494.10	ENSMUST00000224125.2	705	5	0	0	0	0	multi-exon	FALSE	canonical	3	646	junction_4	40.4498145854836	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTACCCGAGGAGAAGGGA	NA	False	NA	NA	False	NA	NA	NA	55684323	55683103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ES_00014812	chr13	-	2095	5	NIC	ENSMUSG00000021495.11	novel	2950	9	NA	NA	-103	69	combination_of_known_splicesites	FALSE	canonical	3	20	junction_4	62.8589691293136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTCTTAGTCACCATCT	NA	False	NA	65	True	AATAGA	-2	NA	55719036	55687059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55718587
ES_00014813	chr13	-	1238	3	FSM	ENSMUSG00000021495.11	ENSMUST00000225703.2	1234	3	0	-4	0	4	multi-exon	FALSE	canonical	3	162	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATGGTGATTTGCTGA	NA	False	NA	0	True	GATAAA	-23	NA	55691133	55687124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55687526_55689436_55689535_55690394
ES_00014814	chr13	-	4789	5	FSM	ENSMUSG00000021495.11	ENSMUST00000224486.2	4786	5	0	-3	0	0	multi-exon	FALSE	canonical	3	92	junction_4	31.8943568676341	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTATGATGGTGATTTG	NA	False	NA	-4	True	GATAAA	-19	NA	55700142	55687128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930
ES_00014815	chr13	-	3164	10	NIC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	27	1	combination_of_known_junctions	FALSE	canonical	3	32	junction_9	48.4171686720963	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATGATGGTGATTTGC	NA	False	NA	-3	True	GATAAA	-20	NA	55718886	55687127	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55718587
ES_00014816	chr13	-	4341	11	FSM	ENSMUSG00000021495.11	ENSMUST00000021957.8	4341	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	46.3227805728456	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTATGATGGTGATTTG	NA	False	NA	-4	True	GATAAA	-19	NA	55718933	55687128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
ES_00014817	chr13	-	4024	10	NIC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	50	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	54.5902808696942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGAGTTAGTATGATGG	NA	False	NA	-11	True	GATAAA	-12	NA	55718863	55687135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
ES_00014820	chr13	-	2269	3	FSM	ENSMUSG00000021506.8	ENSMUST00000021968.7	2451	3	182	0	182	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGAGCCCTAGCTGCTT	NA	False	NA	NA	False	ATTAAA	-25	NA	55979056	55972863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55974425_55976252_55976489_55978584
ES_00014821	chr13	-	1883	10	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	0	45020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	395.444366395047	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCCAGTGTGTTCAAT	6096	False	NA	NA	False	NA	NA	NA	56283253	56176411	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_56176446_56221434_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00014822	chr13	-	1973	10	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	0	31839	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	421.511038474149	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAAAAGAAAT	6006	False	NA	NA	False	NA	NA	NA	56283343	56189592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_56189623_56221433_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00014823	chr13	-	2046	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCGTGTTTTGTGTTAC	5905	False	NA	-5	True	AGTAAA	-18	NA	56283444	56221431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00014825	chr13	-	903	6	FSM	ENSMUSG00000015937.16	ENSMUST00000139511.8	889	6	0	-14	0	14	multi-exon	FALSE	canonical	3	56	junction_1	455.76511494409	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAGAATTGATTAAAAGA	6006	False	NA	1	True	AATAAA	-29	NA	56283343	56243354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_56243455_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00014827	chr13	-	1801	4	FSM	ENSMUSG00000021508.12	ENSMUST00000021970.11	1827	4	26	0	26	0	multi-exon	FALSE	canonical	3	62	junction_2	5.8878405775519	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTACTCCTGGGCTGTT	NA	False	NA	2	True	AATAAA	-22	NA	56444338	56436455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_56437621_56440273_56440388_56443638_56443745_56443922
ES_00014829	chr13	-	2694	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	0	-16	0	16	mono-exon	FALSE	NA	NA	NA	NA	NA	412	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATAACCTGGTGGGTG	NA	False	NA	11	True	AATAAA	-31	NA	58276370	58273676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58273700_58276400
ES_00014831	chr13	-	3686	11	FSM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_3	227.671803260746	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTCGCCTCTTTTGTA	1727	False	NA	-2	True	AATAAA	-20	NA	58363467	58323969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ES_00014832	chr13	-	3566	10	FSM	ENSMUSG00000005312.16	ENSMUST00000076454.8	3561	10	0	-5	0	-2	multi-exon	FALSE	canonical	3	487	junction_3	294.557588324433	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTGTCTCGCCTCTTTTG	1761	False	NA	-4	True	AATAAA	-18	NA	58363433	58323971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ES_00014834	chr13	-	619	5	FSM	ENSMUSG00000021552.8	ENSMUST00000224273.2	817	5	0	198	0	-198	multi-exon	FALSE	canonical	2	68	junction_1	38.6328875441637	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATGAATATACTATCTTA	NA	False	NA	NA	False	CATAAA	-33	NA	58411792	58398731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755
ES_00014839	chr13	-	2585	12	FSM	ENSMUSG00000021546.19	ENSMUST00000177497.8	2585	12	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1120.16409659736	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	9212	False	NA	-23	True	AATAAA	-15	NA	58545869	58539052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566
ES_00014840	chr13	-	2704	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5126	False	NA	-23	True	AATAAA	-15	NA	58549955	58539052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ES_00014841	chr13	-	2626	15	FSM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1943.30427759168	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4803	False	NA	-23	True	AATAAA	-15	NA	58550278	58539052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ES_00014842	chr13	-	2676	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4765	False	NA	-23	True	AATAAA	-15	NA	58550316	58539052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ES_00014843	chr13	-	2653	15	FSM	ENSMUSG00000021546.19	ENSMUST00000176207.8	2653	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1988.3049647006	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATGGAAAAAGTTCC	4618	False	NA	-121	True	NA	NA	NA	58550463	58539150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ES_00014852	chr13	-	1004	10	FSM	ENSMUSG00000021546.19	ENSMUST00000176849.8	1004	10	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_4	2797.65195639769	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAGAGGAAGGCCTGGA	5125	False	NA	NA	False	NA	NA	NA	58549956	58542161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ES_00014855	chr13	-	1133	9	FSM	ENSMUSG00000021546.19	ENSMUST00000224524.2	761	9	-305	-67	0	0	multi-exon	FALSE	canonical	3	132	junction_8	2470.23363014513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTGGGATATTTTTA	5697	False	NA	NA	False	NA	NA	NA	58549384	58542978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58548923
ES_00014858	chr13	-	775	7	FSM	ENSMUSG00000021546.19	ENSMUST00000177377.8	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_6	2367.11782671576	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGTTTTTTAAGGTGGT	5157	False	NA	NA	False	NA	NA	NA	58549924	58543702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ES_00014859	chr13	-	1053	5	FSM	ENSMUSG00000021546.19	ENSMUST00000176558.2	1053	5	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_4	2740.58628535939	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAGGCTACCTTAAAT	5151	False	NA	NA	False	AATAAA	-18	NA	58549930	58544850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ES_00014861	chr13	-	4347	25	FSM	ENSMUSG00000021557.16	ENSMUST00000164215.8	4331	25	0	-16	0	16	multi-exon	FALSE	canonical	3	4	junction_1	7.23561791878666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTAAAGCGGGATAG	1851	False	NA	NA	False	AATAAA	-41	NA	59692253	59601647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59602495_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59630330_59630419_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200
ES_00014862	chr13	-	513	5	FSM	ENSMUSG00000021557.16	ENSMUST00000167096.8	508	5	0	-5	0	5	multi-exon	FALSE	canonical	2	7	junction_4	4.06201920231798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTGTTGTTGCTTCTT	1066	False	NA	NA	False	ATTAAA	-21	NA	59705114	59679713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
ES_00014863	chr13	-	3954	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	0	0	0	0	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCATCCTCTCTAGGT	NA	False	NA	NA	False	AATAAA	-16	NA	59823625	59782439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
ES_00014864	chr13	-	4261	4	FSM	ENSMUSG00000050876.10	ENSMUST00000066510.8	4261	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	873	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTGTGAGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	59853995	59847896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59851837_59851954_59852016_59852859_59852903_59853778
ES_00014865	chr13	-	1922	5	NNC	ENSMUSG00000044792.8	novel	1942	4	NA	NA	0	34547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.437833706204	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCAGCACTGGCGATGAT	NA	False	NA	NA	False	NA	NA	NA	59917590	59868675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_59868696_59903228_59904818_59906703_59906810_59910555_59910610_59917437
ES_00014867	chr13	-	5877	27	NIC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_26	20.4582125694906	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGCAACCGGGGCC	NA	False	NA	NA	False	AATAAA	-21	NA	59970928	59919374	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970789
ES_00014868	chr13	-	5869	28	FSM	ENSMUSG00000035248.10	ENSMUST00000071703.6	5869	28	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	33.5472559435836	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGCAACCGGGGCC	NA	False	NA	NA	False	AATAAA	-21	NA	59970961	59919374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59920674_59926565_59926630_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970894
ES_00014870	chr13	-	5918	27	NNC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	26.9885193649965	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCCACATTATTTTCT	NA	False	NA	-4	True	AATAAA	-21	NA	59970928	59919689	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969938_59970446
ES_00014873	chr13	-	3477	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225576.2	2499	2	2	-980	2	980	multi-exon	FALSE	canonical	3	36	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGTTTTGTTTTTCTTTT	NA	False	NA	2	True	ATTAAA	-24	NA	59970945	59966946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59969925_59970446
ES_00014874	chr13	-	2986	1	FSM	ENSMUSG00000052957.9	ENSMUST00000065086.6	2961	1	-29	4	-29	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCTATGGTGCAGTTGC	NA	False	NA	NA	False	ATTAAA	-29	NA	60325208	60322222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_60322200_60325200
ES_00014876	chr13	-	228	1	FSM	ENSMUSG00000114023.2	ENSMUST00000223250.2	699	1	470	1	470	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTAAGGAAGATGTGCTG	NA	False	NA	NA	False	NA	NA	NA	61835324	61835096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_61835100_61835300
ES_00014877	chr13	-	1119	3	Intergenic	novelGene_1080	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTATATATGAAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	62008687	61891701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_61892638_62007916_62008001_62008588
ES_00014879	chr13	-	622	2	Antisense	novelGene_ENSMUSG00000074867.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCCTGGTTTGGGACTT	NA	False	NA	NA	False	NA	NA	NA	62385605	62322848	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_62323046_62385180
ES_00014881	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62530991	62516141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
ES_00014883	chr13	-	2483	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000094942.8	novel	2310	4	NA	NA	-7	0	multi-exon	FALSE	canonical	2	10	junction_3	56.1070405564221	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62564834	62516141	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62564751
ES_00014885	chr13	-	1816	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000113450.2	novel	633	4	NA	NA	0	453	multi-exon	FALSE	canonical	1	2	junction_3	54.6355195820448	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTCTGTTAATATGATAA	9538	False	NA	NA	False	ATTAAA	-41	NA	62614620	62549853	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_62551194_62555228_62555290_62555482_62555610_62604500_62604562_62604746_62604874_62614520
ES_00014886	chr13	-	1539	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	2	436	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	48.0300831655421	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGCATATTTGTGTGTT	NA	False	NA	NA	False	ATTAAA	-41	NA	62564855	62549870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62551118_62555228_62555290_62555482_62555610_62564751
ES_00014887	chr13	-	1622	5	Fusion	ENSMUSG00000113623.2_ENSMUSG00000074865.12	novel	1714	5	NA	NA	24	434	multi-exon	TRUE	canonical	0	0	junction_1	87.6598539811697	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTGCATATTTGTGTG	NA	False	NA	NA	False	ATTAAA	-39	NA	62718989	62549872	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_62550533_62635144_62635805_62640180_62640241_62640621_62640749_62718874
ES_00014890	chr13	-	1949	3	FSM	ENSMUSG00000113450.2	ENSMUST00000223247.2	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGCATATCACAGTTA	9538	False	NA	-4	True	NA	NA	NA	62614620	62601285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62603008_62604746_62604874_62614520
ES_00014891	chr13	-	1653	4	FSM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	51.4220013439989	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62706421	62634459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62635805_62640180_62640241_62640621_62640749_62706300
ES_00014892	chr13	-	2206	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	2.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706443	62664608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62666545_62668231_62668359_62706300
ES_00014893	chr13	-	677	5	FSM	ENSMUSG00000074865.12	ENSMUST00000222852.2	677	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	28.9006920332369	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGTACATAAAAGAACACA	NA	False	NA	NA	False	NA	NA	NA	62706409	62666375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62670268_62670480_62706300
ES_00014894	chr13	-	2231	4	FSM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	-84	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	18.9267594221045	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62706409	62664610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62706300
ES_00014896	chr13	-	682	1	FSM	ENSMUSG00000113428.2	ENSMUST00000221988.2	745	1	-30	93	-30	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACCTGCCCTCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62676804	62676122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62676100_62676800
ES_00014903	chr13	-	2458	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221996.2	2458	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	60.1461183748008	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832759	62819597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62821755_62823062_62823124_62823332_62823460_62832646
ES_00014904	chr13	-	2678	7	NIC	ENSMUSG00000074863.6	novel	1765	7	NA	NA	35	-1	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	82.6043111600249	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGTTCCTGGGAAAAAA	6843	False	NA	0	True	AATAAA	-19	NA	62860532	62819598	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_62821755_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854071_62855967_62856024_62860451
ES_00014906	chr13	-	2467	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	-27	-1825	0	0	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832759	62819597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
ES_00014908	chr13	-	2771	4	NIC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	6	387	combination_of_known_junctions	FALSE	canonical	3	92	junction_1	78.7950929098168	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6814	False	NA	0	True	AATAAA	-18	NA	62860561	62846832	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_62849306_62853514_62853576_62853943_62854071_62860451
ES_00014909	chr13	-	939	1	FSM	ENSMUSG00000074863.6	ENSMUST00000222602.2	939	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACAATGAATGTGATCT	9852	False	NA	NA	False	NA	NA	NA	62848860	62847921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62847900_62848900
ES_00014912	chr13	-	3287	4	FSM	ENSMUSG00000091183.6	ENSMUST00000201047.4	3279	4	0	-8	0	8	multi-exon	TRUE	canonical	3	25	junction_3	2.05480466765633	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATCTATCCTCTATGCTA	NA	False	NA	NA	False	NA	NA	NA	62933622	62920005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62922977_62924530_62924592_62924776_62924904_62933494
ES_00014915	chr13	-	2897	15	FSM	ENSMUSG00000021461.18	ENSMUST00000161977.8	3111	15	0	214	0	1	multi-exon	TRUE	canonical	3	59	junction_14	18.8014599954148	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGACCTTCCTACTCC	NA	False	NA	-5	True	AATAAA	-19	NA	63579538	63459566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
ES_00014917	chr13	-	6825	23	NNC	ENSMUSG00000021466.13	novel	7002	24	NA	NA	701	0	intron_retention	TRUE	canonical	3	40	junction_22	16.0224532536208	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTTGTTTCTAGAATGT	NA	False	NA	0	True	AATAAA	-23	NA	63710928	63656141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63710842
ES_00014927	chr13	-	3535	5	FSM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	0	-3	0	3	multi-exon	FALSE	canonical	3	41	junction_4	7.32717544487642	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTCATTCTTACAGTT	6050	False	NA	NA	False	AATAAA	-29	NA	64301016	64280828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64300413
ES_00014928	chr13	-	5911	15	NNC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	23.0665629544285	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGTTGTATTCAC	9689	False	NA	NA	False	ATTAAA	-15	NA	64422789	64340358	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218_64396314_64422404
ES_00014935	chr13	-	3012	6	FSM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	0	-1	0	1	multi-exon	TRUE	canonical	3	150	junction_1	21.3672646822189	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTGTTCTGGGTTCT	NA	False	NA	1	True	ATTAAA	-18	NA	64460524	64437609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
ES_00014936	chr13	-	2864	5	FSM	ENSMUSG00000021482.11	ENSMUST00000220895.2	2858	5	0	-6	0	6	multi-exon	FALSE	canonical	2	9	junction_1	71.2635951941803	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTTTGGGTTATTTT	NA	False	NA	-15	True	AATAAA	-33	NA	64460524	64437625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64440043_64456635_64456742_64456906_64456961_64460080_64460150_64460306
ES_00014937	chr13	-	1971	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	0	0	0	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	False	NA	NA	False	NA	NA	NA	64518120	64511027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ES_00014938	chr13	-	223	1	FSM	ENSMUSG00000113753.2	ENSMUST00000220840.2	489	1	253	13	253	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTGTGGACAACTCTAAT	NA	False	NA	NA	False	NA	NA	NA	64772321	64772098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64772100_64772300
ES_00014939	chr13	-	1214	1	FSM	ENSMUSG00000113263.2	ENSMUST00000220879.2	1220	1	-56	62	-56	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAGCAACAGCGCCACAG	NA	False	NA	NA	False	NA	NA	NA	65077031	65075817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_65075800_65077000
ES_00014942	chr13	-	3527	10	FSM	ENSMUSG00000032999.11	ENSMUST00000037372.8	3527	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	7.43531778858738	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGACTTCTAATCTCAAA	NA	False	NA	-7	True	ATTAAA	-24	NA	65353530	65324924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433
ES_00014949	chr13	-	4345	6	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-4	1243	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	36.412085905644	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTACTGTTCTGAATTT	7277	False	NA	NA	False	NA	NA	NA	65496415	65482792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65486136_65486639_65487225_65488362_65488424_65488791_65488919_65491542_65491654_65496297
ES_00014950	chr13	-	2736	5	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-4	-339	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_1	33.8110558841335	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	7277	False	NA	NA	False	NA	NA	NA	65496415	65484374	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65486220_65486639_65487225_65488362_65488424_65488791_65488919_65496297
ES_00014955	chr13	-	546	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-453674	-6	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	183.5	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTAGCATGCCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	66098281	65639608	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65639775_65644415_65644605_66098090
ES_00014959	chr13	-	566	3	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-6189	2	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_2	4	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	1641	False	NA	NA	False	NA	NA	NA	65846999	65840158	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65840489_65840688_65840816_65846890
ES_00014960	chr13	-	334	4	Intergenic	novelGene_1115	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_3	80.0347146902865	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATCAATGTGGTAAAGTC	NA	False	NA	NA	False	NA	NA	NA	65960872	65953086	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65953125_65954300_65954362_65954561_65954689_65960764
ES_00014961	chr13	-	707	1	FSM	ENSMUSG00000074841.3	ENSMUST00000091539.4	545	1	-279	117	-279	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGGACGGGGCCGGCTT	NA	False	NA	NA	False	NA	NA	NA	66042852	66042145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66042100_66042900
ES_00014962	chr13	-	1770	1	Intergenic	novelGene_1119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGAGATTATCAGATCTT	540	False	NA	NA	False	NA	NA	NA	66108062	66106292	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_66106300_66108100
ES_00014963	chr13	-	2844	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8363	8	intron_retention	FALSE	canonical	3	49	junction_2	59.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACTCACCACATACTTAAA	NA	False	NA	NA	False	NA	NA	NA	66138968	66124148	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66126651_66126851_66126979_66138753
ES_00014964	chr13	-	2593	5	Genic_Genomic	ENSMUSG00000091347.3	novel	255	1	NA	NA	-16541	1509	multi-exon	TRUE	non_canonical	0	0	junction_1	42.4403993854912	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGACCATCTAGTTCT	9946	False	NA	23	True	NA	NA	NA	66391928	66373623	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_66374988_66375071_66375998_66384209_66384271_66384471_66384599_66391813
ES_00014966	chr13	-	2633	4	Genic_Genomic	ENSMUSG00000091347.3	novel	255	1	NA	NA	-16518	1488	multi-exon	FALSE	canonical	3	41	junction_2	29.4542960458327	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	9969	False	NA	2	True	NA	NA	NA	66391905	66373644	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_66375998_66384209_66384271_66384471_66384599_66391813
ES_00014968	chr13	-	3058	4	Genic_Genomic	ENSMUSG00000114729.2	novel	2350	1	NA	NA	-6319	2417	multi-exon	FALSE	canonical	1	1	junction_1	17.1529071070248	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66497313	66486227	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_66489002_66490608_66490670_66490865_66490993_66497217
ES_00014969	chr13	-	1577	6	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	7	-17298	multi-exon	FALSE	canonical	3	19	junction_1	69.7309113664808	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATAAAGTTTCTTCCTCG	NA	False	NA	NA	False	AATAAA	-28	NA	66589132	66516510	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_66517022_66518268_66518952_66519399_66519543_66581478_66581540_66581739_66581867_66589080
ES_00014972	chr13	-	3038	5	Fusion	ENSMUSG00000114629.2_ENSMUSG00000074832.12	novel	2587	4	NA	NA	0	77	multi-exon	TRUE	canonical	1	5	junction_1	70.4250488107747	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTAATTTGAATATGCT	NA	False	NA	NA	False	NA	NA	NA	66589139	66544533	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_66544743_66577708_66580291_66581478_66581540_66581739_66581867_66589080
ES_00014973	chr13	-	406	4	NNC	ENSMUSG00000074832.12	novel	515	5	NA	NA	7	3562	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3097132110718	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTTGGTCATGAAATGT	NA	False	NA	2	True	NA	NA	NA	66589132	66574388	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66574555_66581478_66581540_66581739_66581867_66589080
ES_00014974	chr13	-	932	4	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-31	494	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	71.3411210702184	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTGTGTCTTGTAGGAA	NA	False	NA	NA	False	NA	NA	NA	66589210	66577456	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66578071_66581478_66581540_66581739_66581867_66589080
ES_00014975	chr13	-	465	4	NNC	ENSMUSG00000074832.12	novel	515	5	NA	NA	7	449	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3097132110718	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTAATTTGAATATGC	NA	False	NA	NA	False	NA	NA	NA	66589132	66577501	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66577727_66581478_66581540_66581739_66581867_66589080
ES_00014976	chr13	-	3026	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	0	-439	0	439	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATAAACTGTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	66589139	66577511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ES_00014977	chr13	-	1097	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	0	-3	0	3	multi-exon	FALSE	canonical	3	13	junction_1	24	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTGTTTTTCTTGAGG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66652035_66653161_66653268_66667410
ES_00014978	chr13	-	1541	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	364	-386	0	380	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCACTGGCACCTAACTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66650843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
ES_00014979	chr13	-	934	5	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-7472	27139	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	88.3809227152557	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATGACCTCTGACCACCT	NA	False	NA	NA	False	NA	NA	NA	66828865	66790852	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66791360_66791808_66791952_66821007_66821069_66821267_66821395_66828769
ES_00014980	chr13	-	458	4	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-7477	1309	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	85.7956227839678	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66828870	66816682	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66816852_66821007_66821069_66821267_66821395_66828769
ES_00014982	chr13	-	2288	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9891	354	intron_retention	FALSE	canonical	3	25	junction_5	11.6961532137708	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTGAGATTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	66846307	66830548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
ES_00014983	chr13	-	2191	5	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9872	354	intron_retention	FALSE	canonical	3	26	junction_4	11.6726175299288	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTGAGATTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	66846288	66830548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66846221
ES_00014987	chr13	-	2267	5	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7250	22280	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_2	35.6677375228651	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTATTCAGCCACCAAA	1344	False	NA	NA	False	TTTAAA	-35	NA	67010185	66975434	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66977274_66977723_66977867_67002549_67002611_67002809_67002937_67010088
ES_00014989	chr13	-	3643	5	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7249	302	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.9630526692585	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1345	False	NA	2	True	NA	NA	NA	67010184	66997412	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66999945_67000116_67000944_67002549_67002611_67002809_67002937_67010088
ES_00014993	chr13	-	1561	8	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	0	175	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	109.238178270405	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCTTCTTTTTATTAC	465	False	NA	NA	False	NA	NA	NA	67081064	67060006	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065233_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ES_00014994	chr13	-	1423	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	0	-8	0	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	398	False	NA	NA	False	AATAAA	-18	NA	67081131	67060181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
ES_00014995	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	377	False	NA	NA	False	AATAAA	-18	NA	67081152	67060181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ES_00014996	chr13	-	2357	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	0	-4	0	4	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATTACTGTTTTTT	427	False	NA	NA	False	AATAAA	-19	NA	67081102	67069248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
ES_00014997	chr13	-	2416	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.68331255192114	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	1	True	AATAAA	-20	NA	67229576	67217462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
ES_00015000	chr13	-	1002	2	FSM	ENSMUSG00000100235.9	ENSMUST00000187652.3	1100	2	37	61	-18	-61	multi-exon	FALSE	canonical	2	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTATAGTTGACAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	67256631	67253493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67254377_67256512
ES_00015003	chr13	-	5640	4	FSM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	-21	-942	-21	942	multi-exon	FALSE	canonical	3	11	junction_1	6.64997911442	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATTTTGTAATTATCTT	NA	False	NA	NA	False	NA	NA	NA	67508745	67486427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67491722_67493413_67493510_67495906_67496034_67508622
ES_00015004	chr13	-	4121	4	FSM	ENSMUSG00000078995.11	ENSMUST00000057070.9	4126	4	5	0	5	0	multi-exon	FALSE	canonical	2	8	junction_1	8.33999733546453	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGGAAATGGGGCCTTA	2233	False	NA	NA	False	NA	NA	NA	67523924	67511702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67515485_67520295_67520392_67520869_67520997_67523808
ES_00015008	chr13	-	468	3	FSM	ENSMUSG00000055560.9	ENSMUST00000224496.2	504	3	0	36	0	-36	multi-exon	FALSE	canonical	3	38	junction_2	2.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGAGCAGTGAGCAGTG	NA	False	NA	NA	False	NA	NA	NA	67569527	67561048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67561323_67561952_67562080_67569460
ES_00015010	chr13	-	2076	5	Fusion	ENSMUSG00000069206.15_ENSMUSG00000059839.10	novel	1092	5	NA	NA	5	-4	intron_retention	FALSE	non_canonical	3	47	junction_2	18.7533330370897	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAAGATTGGTGTCTGCT	5449	False	NA	0	True	NA	NA	NA	67632339	67588555	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_67588655_67589779_67591454_67596939_67597036_67597468_67597596_67632259
ES_00015013	chr13	-	3744	4	FSM	ENSMUSG00000059839.10	ENSMUST00000019572.9	3744	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTTCGTGTGGTTTGT	5444	False	NA	0	True	NA	NA	NA	67632344	67619631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67623071_67629288_67629382_67629837_67629965_67632259
ES_00015017	chr13	-	4867	6	NNC	ENSMUSG00000058093.14	novel	4835	4	NA	NA	19	53342	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.7387359461886	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCTCGAAGGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	67757787	67684215	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_67684242_67693675_67693691_67737557_67742035_67743334_67743431_67744767_67744895_67757661
ES_00015018	chr13	-	5307	4	FSM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	0	-14	0	14	multi-exon	FALSE	canonical	3	55	junction_1	6.68331255192114	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTTGTCTAATGACATA	NA	False	NA	NA	False	NA	NA	NA	67701949	67686745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67691030_67693442_67693539_67694743_67694871_67701149
ES_00015020	chr13	-	700	3	FSM	ENSMUSG00000095432.10	ENSMUST00000053289.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTACATGCATGGCAAT	NA	False	NA	NA	False	AATAAA	-12	NA	67701257	67693073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67693539_67694743_67694871_67701149
ES_00015021	chr13	-	4804	4	FSM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	31	0	11	0	multi-exon	FALSE	canonical	3	23	junction_3	17.2497987105808	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGGTGTCTCTTC	NA	False	NA	-4	True	NA	NA	NA	67757795	67737557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757691
ES_00015024	chr13	-	542	3	FSM	ENSMUSG00000048280.19	ENSMUST00000125495.10	712	3	16	154	16	-58	multi-exon	FALSE	canonical	3	19	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATCTGTTATTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	67831654	67820900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67821213_67821680_67821808_67831551
ES_00015030	chr13	-	2728	14	FSM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_10	83.6727918422384	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730232	68709481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68727661_68727816_68728669_68728835_68730183
ES_00015034	chr13	-	4828	13	FSM	ENSMUSG00000034575.14	ENSMUST00000198607.5	4750	13	-68	-10	-68	10	multi-exon	FALSE	canonical	3	61	junction_1	10.3077640640442	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAGGGTGGGGTAGTTTC	NA	False	NA	-3	True	AATAAA	-25	NA	69682804	69646067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_69648230_69648591_69648757_69650309_69650469_69651024_69651198_69651753_69651855_69652724_69652852_69655034_69655249_69657681_69657811_69658738_69658847_69661008_69661130_69663083_69663131_69663898_69664023_69681606
ES_00015035	chr13	-	4825	13	NNC	ENSMUSG00000034575.14	novel	4750	13	NA	NA	-68	10	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	17.3755495516609	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAGGGTGGGGTAGTTTC	NA	False	NA	-3	True	AATAAA	-25	NA	69682804	69646067	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_69648227_69648591_69648757_69650309_69650469_69651024_69651198_69651753_69651855_69652724_69652852_69655034_69655249_69657681_69657811_69658738_69658847_69661008_69661130_69663083_69663131_69663898_69664023_69681606
ES_00015036	chr13	-	2645	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	0	-1	0	1	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATTGTTTGTCTTCATG	NA	False	NA	NA	False	AATAAA	-20	NA	69759561	69721566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
ES_00015040	chr13	-	546	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	0	-12	0	0	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCTTCCTTTCATAAA	NA	False	NA	4	True	AATAAA	-26	NA	73476571	73467985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
ES_00015043	chr13	-	1368	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	4	-66	4	66	multi-exon	FALSE	canonical	3	37	junction_2	10.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTTCTGGTCTGAAGTC	NA	False	NA	66	True	NA	NA	NA	73495499	73492717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_73493358_73494614_73495181_73495337
ES_00015044	chr13	-	3984	10	FSM	ENSMUSG00000021567.16	ENSMUST00000022051.14	4016	10	31	1	11	-1	multi-exon	FALSE	canonical	2	3	junction_1	1.49897084035912	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTCGCCAAGATGACCCT	NA	False	NA	NA	False	AATAAA	-16	NA	73995719	73966653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995388_73995425_73995521
ES_00015046	chr13	-	3371	13	FSM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	-207	235	-207	-235	multi-exon	FALSE	canonical	3	435	junction_6	23.4319345243955	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACATAGACATGGCCACC	NA	False	NA	NA	False	NA	NA	NA	74086110	74059700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
ES_00015047	chr13	-	3641	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGGCTGTTTTTAGATT	NA	False	NA	NA	False	NA	NA	NA	74210418	74184618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ES_00015048	chr13	-	4428	5	FSM	ENSMUSG00000021572.10	ENSMUST00000223417.2	4478	5	50	0	50	0	multi-exon	FALSE	canonical	3	102	junction_1	5.1234753829798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	8380	False	NA	0	True	NA	NA	NA	74200310	74185751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014
ES_00015050	chr13	-	2318	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTGGTTCACTCTTTT	NA	False	NA	-1	True	NA	NA	NA	74210406	74185752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ES_00015052	chr13	-	2404	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	9	144	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAAGCCTGTGCAGAG	NA	False	NA	NA	False	NA	NA	NA	74210409	74185606	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ES_00015053	chr13	-	4796	13	FSM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	0	126	0	-126	multi-exon	FALSE	canonical	3	174	junction_12	37.5695651055774	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAGAGATGCTAAACTGG	7173	False	NA	NA	False	NA	NA	NA	74356828	74317732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
ES_00015056	chr13	-	1411	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	105	-385	0	385	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGCCTAGTTTTGGCCG	NA	False	NA	NA	False	AATAAA	-15	NA	74465335	74451242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
ES_00015057	chr13	-	1405	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	364	-393	0	385	multi-exon	FALSE	canonical	3	148	junction_2	263.104085867172	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGCCTAGTTTTGGCCG	NA	False	NA	NA	False	AATAAA	-15	NA	74465335	74451242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
ES_00015058	chr13	-	1427	4	FSM	ENSMUSG00000021576.7	ENSMUST00000220861.2	1262	4	-31	-134	6	134	multi-exon	FALSE	canonical	3	803	junction_1	15.7550697307953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCTGTCCTCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	74465434	74456850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74457962_74459786_74459832_74464448_74464511_74465225
ES_00015061	chr13	-	4154	5	FSM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	0	-1	0	1	multi-exon	FALSE	canonical	3	29	junction_1	7.88590514779375	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTAGCTTTTGGTTGTGTTT	NA	False	NA	-3	True	NA	NA	NA	74538955	74517443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74520947_74523086_74523183_74524554_74524682_74526730_74526986_74538782
ES_00015062	chr13	-	1629	3	FSM	ENSMUSG00000069184.5	ENSMUST00000091481.3	1629	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	7	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATCTTCACTAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	74524685	74519544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74520947_74523086_74523183_74524554
ES_00015065	chr13	-	7768	7	NNC	ENSMUSG00000112964.2	novel	1513	5	NA	NA	2	-198	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	15.1813116107345	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATCTCCAAATACATAAAA	6501	False	NA	NA	False	NA	NA	NA	74610806	74583863	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74583936_74585699_74585761_74585978_74586106_74589464_74596679_74598074_74598136_74598354_74598482_74610700
ES_00015066	chr13	-	1614	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAGAATGCAATCAATGT	6469	False	NA	NA	False	NA	NA	NA	74610838	74595390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
ES_00015068	chr13	-	1406	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGTCATGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	74642089	74628172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
ES_00015069	chr13	-	1552	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	0	-3	0	0	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGTCATGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	74642111	74628172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
ES_00015072	chr13	-	395	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAGAGAAACCTTATG	NA	False	NA	NA	False	NA	NA	NA	74670580	74657716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
ES_00015073	chr13	-	3890	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18563	28032	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_4	27.6448910289044	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGACTCTCCAGTTA	NA	False	NA	-1	True	ATTAAA	-19	NA	74739590	74699444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74701034_74725892_74727579_74728971_74729033_74729232_74729360_74731765_74731993_74739390
ES_00015074	chr13	-	4112	6	NNC	ENSMUSG00000113204.2	novel	1371	5	NA	NA	0	28034	intron_retention	TRUE	canonical	0	0	junction_1	37.2934310569569	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCTCCAGTTACT	4968	False	NA	1	True	ATTAAA	-21	NA	74765679	74699442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74700835_74753906_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
ES_00015075	chr13	-	703	5	FSM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	1	0	1	0	multi-exon	FALSE	canonical	3	16	junction_4	21.3658606192215	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGAACACAGTAGTCTT	NA	False	NA	NA	False	NA	NA	NA	74712374	74702218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857_74711944_74712256
ES_00015076	chr13	-	918	5	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18655	-1285	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	32.8252951243397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAATCTATACCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	74739498	74728761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74729033_74729232_74729360_74730309_74730495_74731765_74731993_74739390
ES_00015079	chr13	-	1371	5	FSM	ENSMUSG00000113204.2	ENSMUST00000222003.2	1371	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	23.1786539729985	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATACTGGAGAGAAACCT	4968	False	NA	NA	False	NA	NA	NA	74765679	74755255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
ES_00015081	chr13	-	4737	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	28	0	28	0	multi-exon	FALSE	canonical	3	102	junction_28	16.6207701385947	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74918827	74840486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
ES_00015082	chr13	-	2857	30	FSM	ENSMUSG00000021585.11	ENSMUST00000223033.2	2857	30	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	32.8082020428457	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTACTTTCTTAGGAAT	NA	False	NA	NA	False	NA	NA	NA	74918768	74842361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
ES_00015083	chr13	-	3068	31	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	0	148	combination_of_known_junctions	FALSE	canonical	3	58	junction_30	28.2737609022138	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAACTATCCTGGTTTA	NA	False	NA	NA	False	AATAAA	-27	NA	74956640	74842213	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74956554
ES_00015084	chr13	-	2815	30	NIC	ENSMUSG00000021585.11	novel	2857	30	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_27	26.473283146802	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCAAGGTAAACCTTGG	NA	False	NA	NA	False	AATAAA	-12	NA	74918768	74842406	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
ES_00015086	chr13	-	2998	32	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	76	-144	combination_of_known_junctions	FALSE	canonical	3	30	junction_7	37.865581855849	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCAGTATTTTGATT	NA	False	NA	NA	False	ACTAAA	-33	NA	74956853	74842550	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
ES_00015090	chr13	-	5056	13	NNC	ENSMUSG00000021589.14	novel	4980	12	NA	NA	10	82016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.447587023532	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGAAGTCGTTCATACG	6598	False	NA	NA	False	NA	NA	NA	76092034	75935639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_75935668_76017655_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748_76059115_76061461_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
ES_00015091	chr13	-	542	1	Intergenic	novelGene_1146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATAGGAACTGGATCCTC	NA	False	NA	NA	False	NA	NA	NA	75971400	75970858	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_75970900_75971400
ES_00015092	chr13	-	737	2	Antisense	novelGene_ENSMUSG00000021591.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTAGCCCAGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	75999154	75997330	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_75997847_75998933
ES_00015093	chr13	-	4982	12	FSM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	0	-2	0	2	multi-exon	FALSE	canonical	3	85	junction_5	11.3494456849386	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGAAGTGTTCTGTAGT	6646	False	NA	NA	False	AATAAA	-22	NA	76091986	76017653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748_76059115_76061461_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
ES_00015094	chr13	-	1666	5	FSM	ENSMUSG00000021589.14	ENSMUST00000109606.3	1676	5	10	0	10	0	multi-exon	FALSE	canonical	3	92	junction_4	10.5948100502085	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGGTCGTTTTATGTT	6598	False	NA	NA	False	AATAAA	-24	NA	76092034	76060860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
ES_00015097	chr13	-	1362	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	74	0	-34	0	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATAAATAAAAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	76166715	76150638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
ES_00015098	chr13	-	595	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	32.0555074137902	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166838	76150885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
ES_00015099	chr13	-	1003	4	NNC	ENSMUSG00000043190.15	novel	2807	4	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	34.4125300177453	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTAAAGTAATTTTGTT	NA	False	NA	-11	True	NA	NA	NA	76166678	76150887	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_76151208_76156101_76156137_76156229_76156406_76166206
ES_00015101	chr13	-	3421	19	NNC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	34.6410161513775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283527	77191206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249203_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00015102	chr13	-	3568	20	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	35.2448499214194	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283557	77191206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00015103	chr13	-	3747	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283592	77191206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00015104	chr13	-	1267	6	FSM	ENSMUSG00000021597.17	ENSMUST00000162320.2	1241	6	0	-26	0	26	multi-exon	FALSE	canonical	3	90	junction_1	13.9283882771841	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTGCAGCTCTTG	NA	False	NA	NA	False	NA	NA	NA	77283579	77253658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00015106	chr13	-	484	1	FSM	ENSMUSG00000114592.2	ENSMUST00000224369.2	484	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACACAAAGAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	78422071	78421587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_78421600_78422100
ES_00015109	chr13	-	645	3	Intergenic	novelGene_1151	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	28.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTACTTGTGAACTGTT	NA	False	NA	0	True	NA	NA	NA	81792384	81784029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_81784533_81785816_81785901_81792326
ES_00015110	chr13	-	744	3	Intergenic	novelGene_1150	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	53	junction_2	15	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACTTGTGAACTGTTCC	NA	False	NA	2	True	NA	NA	NA	81792382	81784027	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_81784533_81785816_81786000_81792326
ES_00015112	chr13	-	424	4	FSM	ENSMUSG00000035834.12	ENSMUST00000161093.8	424	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	130.922368855237	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGACACAGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	81859075	81841964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_81842010_81842766_81842897_81847862_81848013_81858976
ES_00015116	chr13	-	4563	25	FSM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	0	0	0	0	multi-exon	TRUE	canonical	3	186	junction_11	23.7235232534199	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTAGATCCATAAAGCAT	NA	False	NA	NA	False	AATAAA	-29	NA	85437148	85362898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_85364307_85364995_85365131_85366300_85366379_85367524_85367614_85369589_85369658_85371576_85371664_85372321_85372438_85373600_85373744_85374652_85374813_85375070_85375244_85376349_85376427_85376726_85376885_85377723_85377802_85378506_85378595_85381707_85381865_85382478_85382600_85386257_85386337_85392306_85392458_85394709_85394763_85398550_85398583_85400544_85400663_85403502_85403574_85404457_85404594_85406436_85406590_85436514
ES_00015118	chr13	-	714	2	FSM	ENSMUSG00000017778.15	ENSMUST00000132233.2	709	2	0	-5	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86194466	86192934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_86193028_86193845
ES_00015119	chr13	-	540	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86195023	86192934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_86193028_86193845_86193989_86194719
ES_00015120	chr13	-	583	2	Intergenic	novelGene_1154	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATTTTTTAAATATGG	NA	False	NA	NA	False	AGTAAA	-4	NA	86202385	86201045	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_86201318_86202074
ES_00015121	chr13	-	1264	1	FSM	ENSMUSG00000094463.3	ENSMUST00000178288.3	1264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGACAGCATGGCGGGCAC	NA	False	NA	NA	False	NA	NA	NA	89726538	89725274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_89725300_89726500
ES_00015122	chr13	-	9649	14	FSM	ENSMUSG00000021614.17	ENSMUST00000159910.8	8332	14	-287	-1030	-100	2	multi-exon	FALSE	canonical	3	34	junction_8	8.56786344567119	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTTGTCTGTTTATT	2506	False	NA	1	True	AAGAAA	-25	NA	89890728	89803428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ES_00015124	chr13	-	3021	6	FSM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	0	-748	0	205	multi-exon	FALSE	canonical	3	48	junction_2	6.6932802122726	2927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCAAGGTCCTTAGGTTT	2797	False	NA	NA	False	NA	NA	NA	89890437	89858596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ES_00015126	chr13	-	1510	8	NIC	ENSMUSG00000021615.14	novel	1540	8	NA	NA	-3	6	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	49.108792180095	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTATTTAACTGAACTTT	NA	False	NA	-1	True	AATAAA	-20	NA	90237204	89997033	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237128
ES_00015127	chr13	-	1603	8	FSM	ENSMUSG00000021619.7	ENSMUST00000022119.6	1583	8	0	-20	0	20	multi-exon	FALSE	canonical	3	10	junction_7	11.5121940673747	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCATATGTTTCATAGC	NA	False	NA	NA	False	ATTAAA	-35	NA	91372087	91083454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91372057
ES_00015128	chr13	-	1196	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6108	38	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGAGCAATGGATTATT	4988	False	NA	NA	False	AATAAA	-36	NA	91365970	91083949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
ES_00015130	chr13	-	970	1	FSM	ENSMUSG00000114579.2	ENSMUST00000224136.2	970	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGTTGAAGGATTCTAAT	NA	False	NA	NA	False	AATACA	-36	NA	91410537	91409567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_91409600_91410500
ES_00015131	chr13	-	1542	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	-1	0	1	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTGTTGAACTGATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	91955824	91944650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ES_00015134	chr13	-	248	2	Intergenic	novelGene_1164	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTCTTGTCTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	92645049	92546269	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_92546490_92645021
ES_00015137	chr13	-	3967	15	FSM	ENSMUSG00000042167.7	ENSMUST00000225868.2	3081	15	102	-988	0	988	multi-exon	FALSE	canonical	3	122	junction_9	113.762104088007	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTTCTAACCGTTGTAC	NA	False	NA	NA	False	AATAAA	-17	NA	93328791	93281801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311215_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
ES_00015138	chr13	-	2991	15	FSM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	0	-1	0	0	multi-exon	FALSE	canonical	3	135	junction_4	92.51905484928	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTGAGGTGTTATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	93328791	93282789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
ES_00015139	chr13	-	8785	11	FSM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	0	-9	0	9	multi-exon	TRUE	canonical	0	0	junction_8	1.62788205960997	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTGTTTATATATTA	1487	False	NA	NA	False	AATAAA	-25	NA	93636316	93566599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_93571928_93575946_93576258_93577522_93578130_93579093_93579190_93589314_93589402_93589895_93590084_93590435_93590602_93596127_93596298_93601074_93601226_93609128_93609303_93634809
ES_00015141	chr13	-	2175	8	FSM	ENSMUSG00000042118.8	ENSMUST00000015941.8	2467	8	0	292	0	-292	multi-exon	FALSE	canonical	3	8	junction_1	2.60298102261266	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACTCCATGTGCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	93810810	93792519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_93793653_93798809_93799039_93799653_93799837_93800181_93800330_93803081_93803274_93805762_93805855_93807920_93808054_93810745
ES_00015142	chr13	-	4132	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	127	0	127	0	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATATAGTATAAAAGAGT	NA	False	NA	NA	False	ATTAAA	-30	NA	94422210	94337817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
ES_00015144	chr13	-	3249	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	27	True	AATAAA	-14	NA	95511860	95487190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
ES_00015145	chr13	-	2755	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	0	-14	0	14	multi-exon	FALSE	canonical	3	40	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTCTTTCAGGCTGTGT	9826	False	NA	NA	False	AATAAA	-30	NA	95661735	95648225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_95650790_95661544
ES_00015146	chr13	-	3352	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	7	-23	7	23	multi-exon	FALSE	canonical	3	48	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATTGTTCCTGTGGGCCC	NA	False	NA	NA	False	AATAAA	-26	NA	95754988	95738287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_95741446_95754794
ES_00015147	chr13	-	5848	36	FSM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	0	-1	0	1	multi-exon	FALSE	canonical	3	39	junction_26	10.4750042618471	6193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGAGTTTTTTTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	96028503	95763680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_95764629_95765454_95765564_95766496_95766635_95768531_95768693_95771971_95772185_95774225_95774314_95783269_95783412_95784685_95784789_95794310_95794444_95796625_95796859_95797506_95797592_95798094_95798236_95800570_95800796_95802100_95802265_95804875_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
ES_00015149	chr13	-	635	5	FSM	ENSMUSG00000021676.11	ENSMUST00000238261.2	632	5	0	-3	0	3	multi-exon	FALSE	canonical	3	55	junction_2	6.44204936336256	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCACCCTTGGACTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	96028265	95882816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
ES_00015152	chr13	-	4226	15	FSM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	0	-1	0	1	multi-exon	FALSE	canonical	3	26	junction_7	5.85191404236116	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGACTGTCATATT	NA	False	NA	NA	False	AATAAA	-21	NA	96678993	96617196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
ES_00015154	chr13	-	4421	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	4	0	4	0	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	-5	True	AGTAAA	-22	NA	96807440	96785474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
ES_00015157	chr13	-	1140	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	-110	0	-110	0	mono-exon	FALSE	NA	NA	NA	NA	NA	647	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235855	97234715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_97234700_97235900
ES_00015164	chr13	-	566	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	-5	0	5	mono-exon	FALSE	NA	NA	NA	NA	NA	329	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAGATTCGAGAATGAC	NA	False	NA	NA	False	AATAAA	-38	NA	97897140	97896574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_97896600_97897100
ES_00015165	chr13	-	4142	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	28	-50	0	50	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTCCAAGTTAAATTTTT	NA	False	NA	-3	True	ATTAAA	-23	NA	98399521	98383302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ES_00015166	chr13	-	2340	6	FSM	ENSMUSG00000041747.4	ENSMUST00000224842.2	2328	6	0	-12	0	12	multi-exon	FALSE	canonical	3	389	junction_3	47.5167338944924	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTAAAAATAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	98399521	98391206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98391563_98393608_98393735_98394343_98395798_98395881_98395975_98397306_98397479_98399382
ES_00015167	chr13	-	1172	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	-46	-35	-7	35	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAGTAAGCAGTTGTCT	NA	False	NA	19	True	NA	NA	NA	98453521	98446368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
ES_00015168	chr13	-	888	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98453514	98446404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ES_00015170	chr13	-	569	4	FSM	ENSMUSG00000021660.15	ENSMUST00000133826.2	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	6398	junction_3	146.166571645731	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAGGTTCAGAATTG	NA	False	NA	NA	False	NA	NA	NA	98453504	98449546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98449802_98450146_98450261_98452737_98452807_98453373
ES_00015172	chr13	-	505	2	NNC	ENSMUSG00000092116.2	novel	527	2	NA	NA	2180	51883	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTCACCTCATCAAGAA	NA	False	NA	NA	False	NA	NA	NA	98626329	98573972	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_98574013_98625864
ES_00015173	chr13	-	706	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1170	-5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATCCTCCTCCATCTTT	NA	False	NA	-11	True	ATTAAA	-18	NA	98854188	98849586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_98850076_98852942_98853093_98854121
ES_00015174	chr13	-	1626	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1170	-1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	22.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCCTCCATCTTTGAAC	NA	False	NA	-7	True	ATTAAA	-22	NA	98854188	98849582	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_98850076_98852942_98853093_98853205
ES_00015175	chr13	-	4490	10	FSM	ENSMUSG00000041685.17	ENSMUST00000225945.2	2764	10	55	-1781	55	1	multi-exon	FALSE	canonical	3	213	junction_9	16.5916831761363	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTGTGCCTTTGTGT	5276	False	NA	-3	True	AATAAA	-23	NA	98885773	98859909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723
ES_00015176	chr13	-	4882	26	NNC	ENSMUSG00000041685.17	novel	5122	26	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	3	213	junction_9	37.5658568383579	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTGTGCCTTTGTGT	NA	False	NA	-3	True	AATAAA	-23	NA	98951716	98859909	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891761_98892072_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
ES_00015177	chr13	-	5128	26	FSM	ENSMUSG00000041685.17	ENSMUST00000040340.16	5122	26	0	-6	0	6	multi-exon	TRUE	canonical	0	0	junction_14	64.1266746370027	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGCCTTTGTGTCCCTT	NA	False	NA	2	True	AATAAA	-28	NA	98951957	98859904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
ES_00015180	chr13	-	1927	15	FSM	ENSMUSG00000041685.17	ENSMUST00000225094.2	1927	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.8157462016366	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	98951661	98887742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98888440_98888841_98888854_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
ES_00015181	chr13	-	1276	14	ISM	ENSMUSG00000041685.17	ENSMUST00000225094.2	1927	15	28	1025	28	121	5prime_fragment	FALSE	canonical	0	0	junction_2	84.7171416116021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCATTTAGATTAT	NA	False	NA	NA	False	AATAAA	-18	NA	98951633	98888767	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_98888854_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
ES_00015182	chr13	-	2964	14	FSM	ENSMUSG00000041685.17	ENSMUST00000224992.2	2964	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.963559488907	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTCTTTCTCTTTCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	98951690	98888888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98890606_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
ES_00015186	chr13	-	8389	24	NIC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	3	224	junction_23	67.7519382879703	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99027504	98975526	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
ES_00015187	chr13	-	8379	24	NIC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	-5	0	combination_of_known_junctions	TRUE	canonical	3	32	junction_23	102.017993890807	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99027511	98975526	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027451
ES_00015188	chr13	-	8445	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109399.9	8445	24	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_23	103.521017838	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99027548	98975526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027422
ES_00015189	chr13	-	8453	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_23	63.8650810868555	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99062892	98975526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
ES_00015190	chr13	-	314	2	Antisense	novelGene_ENSMUSG00000062461.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	230	junction_1	0	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99043626	99034801	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_99034924_99043434
ES_00015191	chr13	-	1700	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	4	0	4	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481209	99456154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
ES_00015192	chr13	-	3033	1	FSM	ENSMUSG00000097828.3	ENSMUST00000225937.2	3157	1	-174	298	38	-298	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAGAATACAGCAGATCA	NA	False	NA	NA	False	NA	NA	NA	99549346	99546313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_99546300_99549300
ES_00015193	chr13	-	12198	7	FSM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	22	-412	0	412	multi-exon	FALSE	canonical	3	33	junction_5	21.4741446602394	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCGAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99653026	99557541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_99562470_99563726_99563966_99565719_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
ES_00015195	chr13	-	2126	17	FSM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	0	-3	0	0	multi-exon	FALSE	canonical	2	186	junction_5	41.3428878405948	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGGGTTGTTGAGATGG	669	False	NA	-3	True	AATAAA	-18	NA	100152147	100085037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
ES_00015197	chr13	-	7567	38	FSM	ENSMUSG00000049658.14	ENSMUST00000109379.9	7567	38	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_23	11.5396860244433	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTGTATATTATTCCT	6991	False	NA	NA	False	AATAAA	-19	NA	100240346	100159812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233_100195454_100195996_100196179_100196801_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
ES_00015200	chr13	-	518	5	FSM	ENSMUSG00000021639.18	ENSMUST00000232450.2	518	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	138.737837304753	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAAGAAGAA	3256	False	NA	NA	False	NA	NA	NA	100613703	100596757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611
ES_00015201	chr13	-	1656	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTTTTTTTCATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100629069	100605087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ES_00015203	chr13	-	4055	9	FSM	ENSMUSG00000021638.13	ENSMUST00000069756.11	4052	9	0	-3	0	3	multi-exon	FALSE	canonical	3	42	junction_8	12.8640730330638	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAGTCCACTGTTTGCAG	NA	False	NA	NA	False	AATAAA	-20	NA	100689006	100633011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688894
ES_00015204	chr13	-	2839	9	FSM	ENSMUSG00000021638.13	ENSMUST00000022140.12	2839	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	20.6272726020674	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCATTTGATGTCATT	NA	False	NA	NA	False	ATTAAA	-22	NA	100689226	100634270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100689071
ES_00015205	chr13	-	2730	18	NNC	ENSMUSG00000021635.15	novel	2392	17	NA	NA	0	47516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.1161971621259	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAATAGAG	NA	False	NA	NA	False	NA	NA	NA	100787555	100706155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100706179_100753671_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ES_00015206	chr13	-	2187	6	FSM	ENSMUSG00000021636.16	ENSMUST00000163163.9	2187	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.1773780845922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTGCTCCTTA	NA	False	NA	-3	True	ATTAAA	-16	NA	100753438	100732466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100753112
ES_00015208	chr13	-	2839	17	FSM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_16	42.8397723354128	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	100787559	100753671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787329
ES_00015210	chr13	-	1299	13	NNC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	0	16470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.242868188677	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACTCAAAAGTCCTTCAC	NA	False	NA	NA	False	NA	NA	NA	100867408	100822668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100822700_100839819_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ES_00015212	chr13	-	3865	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	0	-1877	0	1877	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGCTAATGCAGAGGCC	NA	False	NA	NA	False	NA	NA	NA	100867447	100837261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ES_00015216	chr13	-	1010	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	1	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTTTTCTGTTTATTTA	NA	False	NA	NA	False	AATAAA	-2	NA	100881584	100872461	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ES_00015217	chr13	-	571	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881165	100872584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
ES_00015218	chr13	-	917	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
ES_00015219	chr13	-	920	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-424	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_4	463.256408482387	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881591	100872584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881156_100881238
ES_00015220	chr13	-	1266	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	-15	0	15	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGGCTTAGTGGTTAAAA	NA	False	NA	16	True	AAAAAG	-20	NA	100912407	100896166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ES_00015222	chr13	-	2486	2	FSM	ENSMUSG00000041431.17	ENSMUST00000147790.2	2471	2	0	-15	0	0	multi-exon	FALSE	canonical	3	4063	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100917961	100915239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100916294_100916529
ES_00015223	chr13	-	1075	5	FSM	ENSMUSG00000041431.17	ENSMUST00000134080.2	1075	5	0	0	0	0	multi-exon	FALSE	canonical	3	3352	junction_4	271.501726513847	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTACTTGCTCTTCAATA	NA	False	NA	-50	True	NA	NA	NA	100918541	100916116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132
ES_00015228	chr13	-	584	1	FSM	ENSMUSG00000114738.2	ENSMUST00000225803.2	793	1	-28	237	-28	-237	mono-exon	FALSE	NA	NA	NA	NA	NA	7619	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCAGGCTGGGGCACCT	NA	False	NA	NA	False	NA	NA	NA	101046425	101045841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_101045800_101046400
ES_00015229	chr13	-	1043	1	FSM	ENSMUSG00000114759.2	ENSMUST00000223572.2	411	1	-103	-529	-103	529	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTACTTTGTAGTAAGAA	NA	False	NA	NA	False	ATTAAA	-33	NA	101083426	101082383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_101082400_101083400
ES_00015230	chr13	-	733	1	FSM	ENSMUSG00000096722.3	ENSMUST00000179479.3	645	1	-104	16	-104	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATGATGATGAATAAG	NA	False	NA	NA	False	NA	NA	NA	101175858	101175125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_101175100_101175900
ES_00015233	chr13	-	3025	23	FSM	ENSMUSG00000034751.18	ENSMUST00000167462.8	3025	23	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	3.96498100628052	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAAGGAGAGTCTAGA	4867	False	NA	NA	False	NA	NA	NA	103042294	102878476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_102878591_102887021_102887145_102887888_102888119_102895009_102895246_102895530_102895659_102897467_102897581_102897802_102897926_102904378_102904481_102906276_102906443_102907230_102907364_102908962_102909102_102910693_102910903_102917667_102917754_102919852_102919921_102923824_102923958_102925470_102925573_102930476_102930687_102932593_102932670_102934553_102934712_102941149_102941229_102947008_102947079_102990338_102990428_103042156
ES_00015236	chr13	-	612	1	FSM	ENSMUSG00000034751.18	ENSMUST00000187024.2	1521	1	45	864	4	-864	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTCAGTCTGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	103470955	103470343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103470300_103471000
ES_00015237	chr13	-	6330	10	FSM	ENSMUSG00000032621.9	ENSMUST00000210489.2	6330	10	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	29.6177290915966	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGAGTAGTAATTTCAT	8750	False	NA	NA	False	AATAAA	-20	NA	103901090	103875855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389
ES_00015238	chr13	-	3934	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTTCAGTTTCTATTCC	9992	False	NA	3	True	AATAAA	-21	NA	103911116	103878119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
ES_00015240	chr13	-	2100	7	FSM	ENSMUSG00000032621.9	ENSMUST00000210836.2	2085	7	0	-15	0	0	multi-exon	FALSE	canonical	1	3	junction_3	85.5954632754174	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGAGGGAAAAGGAGAGA	8299	False	NA	-9	True	NA	NA	NA	103901541	103889160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103889211_103889532_103889653_103894693_103894997_103895676_103895808_103896923_103897103_103897537_103897703_103900389
ES_00015243	chr13	-	7055	26	FSM	ENSMUSG00000021709.15	ENSMUST00000091269.11	6224	26	-831	0	-612	0	multi-exon	FALSE	canonical	3	35	junction_5	14.0566852422611	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTCTTGGTGTTGCCT	NA	False	NA	-5	True	NA	NA	NA	104057634	103955298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103964414_103964532_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
ES_00015244	chr13	-	6371	26	FSM	ENSMUSG00000021709.15	ENSMUST00000022222.12	6369	26	0	-2	0	2	multi-exon	FALSE	canonical	3	5	junction_4	18.4440342658541	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTGTTGCCTTTATTC	NA	False	NA	1	True	NA	NA	NA	104057022	103955292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961357_103964414_103964532_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
ES_00015246	chr13	-	4176	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	0	-14	0	14	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGTCTTTTAATGT	NA	False	NA	1	True	AATAAA	-33	NA	104246122	104159550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ES_00015247	chr13	-	2489	12	FSM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	0	-3	0	3	multi-exon	FALSE	canonical	3	279	junction_9	21.8272708341221	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCTCTGTGTTGTGATAT	NA	False	NA	NA	False	AAGAAA	-24	NA	104246094	104171715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ES_00015248	chr13	-	5516	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	46	-2024	0	2024	multi-exon	TRUE	canonical	3	331	junction_5	157.730704704606	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAAAATGGATGGACCC	NA	False	NA	NA	False	AATAAA	-43	NA	104314931	104276632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ES_00015249	chr13	-	2304	12	NIC	ENSMUSG00000021711.18	novel	3502	13	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	3	331	junction_5	173.024051258921	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACATCTGATTTTTTTC	NA	False	NA	-6	True	AATAAA	-38	NA	104314918	104279828	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ES_00015250	chr13	-	1712	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	630	0	7	multi-exon	FALSE	canonical	3	258	junction_6	196.200152905139	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTTTATTTTCTGTAT	NA	False	NA	-18	True	AAAACA	-40	NA	104314931	104280454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ES_00015251	chr13	-	1779	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	-20	-150	-20	150	multi-exon	FALSE	canonical	3	68	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAGAATTAAAAGGAGCG	NA	False	NA	NA	False	TATAAA	-12	NA	104314967	104310079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104311513_104314621
ES_00015252	chr13	-	2342	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365330	104341631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
ES_00015253	chr13	-	1382	5	FSM	ENSMUSG00000021713.10	ENSMUST00000225798.2	1375	5	0	-7	0	7	multi-exon	FALSE	canonical	3	287	junction_3	28.4198434196953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCACGGAGGGGTGGCTT	NA	False	NA	NA	False	TATAAA	-28	NA	104365351	104356173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
ES_00015254	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104953461	104767647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ES_00015255	chr13	-	1821	14	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	68	-191	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_5	188.393143005155	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953393	104767838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929168_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ES_00015256	chr13	-	353	4	FSM	ENSMUSG00000021715.13	ENSMUST00000154165.2	353	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	311.847184798367	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCAGATCAATTTACTTG	NA	False	NA	NA	False	NA	NA	NA	104953650	104944229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104944341_104947724_104947822_104953194_104953308_104953618
ES_00015261	chr13	-	5312	20	FSM	ENSMUSG00000021693.21	ENSMUST00000022204.16	5304	20	0	-8	0	8	multi-exon	FALSE	canonical	3	48	junction_15	23.883141169724	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTCTGTGGCTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	107158626	107095495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776_107123878_107124460_107124584_107126545_107126601_107129670_107129788_107130355_107130451_107158519
ES_00015262	chr13	-	3952	20	NIC	ENSMUSG00000021693.21	novel	5304	20	NA	NA	-278	683	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	27.307624781206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTACTTCAATATAATT	NA	False	NA	8	True	AATAAA	-27	NA	107158912	107097084	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776_107123878_107124517_107124584_107126545_107126601_107129670_107129788_107130355_107130451_107158519
ES_00015264	chr13	-	614	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	163	junction_1	183.055319507519	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_108189189_108189220_108189489_108217886_108217928_108228067_108228158_108294976
ES_00015265	chr13	-	678	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295157	108189122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
ES_00015266	chr13	-	250	4	FSM	ENSMUSG00000068184.8	ENSMUST00000225830.2	250	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	276.594769774605	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATGGATTGAACCTCTG	NA	False	NA	NA	False	NA	NA	NA	108295018	108216860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_108216938_108217886_108217928_108228067_108228158_108294976
ES_00015267	chr13	-	558	1	FSM	ENSMUSG00000114607.2	ENSMUST00000225465.2	1549	1	1343	-352	1343	352	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCCATGACTTTCCAGG	NA	False	NA	NA	False	AAGAAA	-31	NA	108445941	108445383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_108445400_108445900
ES_00015269	chr13	-	265	1	FSM	ENSMUSG00000081277.2	ENSMUST00000119271.2	473	1	121	87	121	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTCGGGGCTTGAGGAG	NA	False	NA	NA	False	AAAAAG	-41	NA	111498088	111497823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_111497800_111498100
ES_00015271	chr13	-	3299	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTTTCCAAACAAATTC	NA	False	NA	NA	False	ACTAAA	-35	NA	111626562	111562465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ES_00015273	chr13	-	723	2	FSM	ENSMUSG00000085634.3	ENSMUST00000132880.3	663	2	-63	3	-63	-3	multi-exon	FALSE	canonical	3	19	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATATTGTTTTTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	111686508	111658886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_111659245_111686143
ES_00015274	chr13	-	405	1	FSM	ENSMUSG00000096842.2	ENSMUST00000179668.2	78	1	-43	-284	-43	284	mono-exon	FALSE	NA	NA	NA	NA	NA	539	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGTTTTGGAGGTGTG	NA	False	NA	NA	False	AATAAA	-41	NA	111730188	111729783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_111729800_111730200
ES_00015275	chr13	-	6978	20	FSM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_8	9.29659038560826	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATTTTGGCTTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	111945527	111882961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272_111890436_111891176_111891330_111891644_111892897_111893146_111893337_111893627_111893720_111894599_111894722_111896485_111896765_111899587_111899772_111900032_111900115_111900615_111900738_111904496_111904646_111905010_111905128_111905820_111906022_111909129_111909331_111912401_111912553_111945036
ES_00015278	chr13	-	1603	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	-91	-170	-91	170	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATACATAGCATATTTGAA	NA	False	NA	NA	False	AGTAAA	-26	NA	112731709	112730106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_112730100_112731700
ES_00015279	chr13	-	3140	22	NNC	ENSMUSG00000021758.15	novel	3012	22	NA	NA	-37	74	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_19	12.5835079052629	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGAGATCAGTATGGTG	NA	False	NA	75	True	NA	NA	NA	112789046	112734792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777777_112781042_112781101_112787865_112787953_112788809
ES_00015281	chr13	-	3708	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	0	-19	0	19	multi-exon	TRUE	canonical	3	524	junction_21	59.6473487509525	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAATTAGAAATGTAAAAAAA	7236	False	NA	NA	False	AAAAAG	-33	NA	113063932	113003932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
ES_00015286	chr13	-	769	2	FSM	ENSMUSG00000021760.6	ENSMUST00000231962.2	769	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCATTTTTTTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	113182927	113179286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_113179834_113182705
ES_00015288	chr13	-	4447	2	FSM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_1	0	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCTTGTCTTTTATTTCTA	NA	False	NA	0	True	AATAAA	-21	NA	113755100	113728714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_113731399_113753337
ES_00015291	chr13	-	716	4	FSM	ENSMUSG00000021764.9	ENSMUST00000232101.2	716	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	693.907454604399	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGGTTTCTGGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	114524586	114425030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_114425403_114453392_114453566_114487983_114488063_114524494
ES_00015292	chr13	-	571	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524599	114425183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
ES_00015293	chr13	-	1851	6	FSM	ENSMUSG00000021765.10	ENSMUST00000022287.8	1851	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	3.32264954516723	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAAACCATTTAAGTCCA	NA	False	NA	NA	False	AGTAAA	-20	NA	114595485	114589505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_114590042_114590815_114591047_114591656_114591882_114592219_114592439_114592898_114593091_114595037
ES_00015300	chr13	-	3392	17	FSM	ENSMUSG00000025453.19	ENSMUST00000099149.10	3464	17	0	72	0	-72	multi-exon	FALSE	canonical	0	0	junction_10	55.0277983727316	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGATGACAAAGAG	NA	False	NA	NA	False	AATAAA	-25	NA	119545533	119472055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511311_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ES_00015301	chr13	-	1885	4	FSM	ENSMUSG00000025453.19	ENSMUST00000144599.2	1885	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	27.3536509852382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTCGTTGAGACTTT	NA	False	NA	NA	False	AATAAA	-14	NA	119545533	119530007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_119531365_119533282_119533513_119541087_119541291_119545438
ES_00015302	chr13	-	215	1	FSM	ENSMUSG00000074635.4	ENSMUST00000099148.3	1123	1	779	129	779	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTAAACACCCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	119624140	119623925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_119623900_119624100
ES_00015303	chr13	-	3009	4	FSM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	0	1094	0	-1094	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTAACAAGTCTATCCAGA	NA	False	NA	NA	False	NA	NA	NA	120217418	120172723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_120174332_120175643_120175913_120189115_120190060_120217230
ES_00015307	chr13	-	2972	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	1	-7	0	7	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTATGGGTGTTTTGTTTG	NA	False	NA	83	True	AGTAAA	-25	NA	120252341	120226715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
ES_00015308	chr13	-	3911	7	FSM	ENSMUSG00000094870.9	ENSMUST00000223722.2	3109	7	-800	-2	-800	1	multi-exon	FALSE	canonical	3	13	junction_6	57.4207182895589	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	77	True	AGTAAA	-19	NA	120253225	120226721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252355
ES_00015314	chr13	-	530	1	FSM	ENSMUSG00000078180.5	ENSMUST00000078729.9	472	1	0	-58	0	58	mono-exon	FALSE	NA	NA	NA	NA	NA	440	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTTTAAGATGAAAATCAA	NA	False	NA	NA	False	CATAAA	-11	NA	120766201	120765671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_120765700_120766200
ES_00015315	chr13	+	274	1	Intergenic	novelGene_995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATATGATAGTAATGCT	NA	False	NA	NA	False	NA	NA	NA	3282386	3282660	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_3282400_3282700
ES_00015316	chr13	+	202	1	Intergenic	novelGene_998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCCTTCTCCCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	3285859	3286061	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_3285900_3286100
ES_00015317	chr13	+	203	1	Intergenic	novelGene_1000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCTGGGGGCCAAGAAAT	6818	False	NA	NA	False	NA	NA	NA	4620944	4621147	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_4620900_4621100
ES_00015318	chr13	+	3589	1	Intergenic	novelGene_1002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTTGTCTAATCTATTC	NA	False	NA	NA	False	NA	NA	NA	8811991	8815580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_8812000_8815600
ES_00015319	chr13	+	273	1	Intergenic	novelGene_1004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGCAGCGTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	8952127	8952400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_8952100_8952400
ES_00015321	chr13	+	207	1	Intergenic	novelGene_1006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGACTTTTTATAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	9848834	9849041	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_9848800_9849000
ES_00015322	chr13	+	230	1	Intergenic	novelGene_1008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCCAGGCAATCCGGAAA	NA	False	NA	NA	False	NA	NA	NA	12010855	12011085	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_12010900_12011100
ES_00015323	chr13	+	249	1	Intergenic	novelGene_1009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCTGGAATCTGGATCGT	NA	False	NA	NA	False	NA	NA	NA	13589553	13589802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_13589600_13589800
ES_00015324	chr13	+	205	1	Intergenic	novelGene_1010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTATTTATTTCTAATAGA	NA	False	NA	NA	False	NA	NA	NA	14009278	14009483	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_14009300_14009500
ES_00015325	chr13	+	208	1	Intergenic	novelGene_1012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATAGCTTTTTGAATGC	NA	False	NA	NA	False	NA	NA	NA	18632725	18632933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_18632700_18632900
ES_00015327	chr13	+	213	1	Intergenic	novelGene_1013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGACATCAAAAGGGAAAT	8750	False	NA	NA	False	AATAAA	-2	NA	18726433	18726646	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_18726400_18726600
ES_00015328	chr13	+	606	1	Intergenic	novelGene_1014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAATGTGTGGCCCA	NA	False	NA	NA	False	TTTAAA	-17	NA	19430960	19431566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_19431000_19431600
ES_00015331	chr13	+	466	1	Intergenic	novelGene_1019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACATATTTTTAATATTT	NA	False	NA	NA	False	NA	NA	NA	23004366	23004832	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_23004400_23004800
ES_00015332	chr13	+	336	1	Intergenic	novelGene_1020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGTGCTCCATCTTCAT	NA	False	NA	NA	False	NA	NA	NA	23355814	23356150	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_23355800_23356200
ES_00015334	chr13	+	264	1	Intergenic	novelGene_1021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGATTAAAACTCTTGG	NA	False	NA	NA	False	NA	NA	NA	23511734	23511998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_23511700_23512000
ES_00015335	chr13	+	654	1	Intergenic	novelGene_1022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAGGATACGAACCACA	NA	False	NA	NA	False	NA	NA	NA	23512259	23512913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_23512300_23512900
ES_00015339	chr13	+	260	1	Intergenic	novelGene_1024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGTTTTTAATAGCTAA	NA	False	NA	NA	False	NA	NA	NA	29331008	29331268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_29331000_29331300
ES_00015342	chr13	+	219	1	Intergenic	novelGene_1028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTACAGTAATTCTCAATGA	NA	False	NA	NA	False	NA	NA	NA	32897177	32897396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_32897200_32897400
ES_00015344	chr13	+	246	1	Intergenic	novelGene_1032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAATTAAGTAAACGAGT	NA	False	NA	NA	False	NA	NA	NA	34716310	34716556	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_34716300_34716600
ES_00015345	chr13	+	231	1	Intergenic	novelGene_1034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTGTTTATTAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	38032177	38032408	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_38032200_38032400
ES_00015347	chr13	+	237	1	Intergenic	novelGene_1035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGTTTCATTCTTATGC	NA	False	NA	NA	False	NA	NA	NA	41151929	41152166	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_41151900_41152200
ES_00015348	chr13	+	282	1	Intergenic	novelGene_1042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATGAATAAATCTGT	7637	False	NA	NA	False	NA	NA	NA	44790052	44790334	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_44790100_44790300
ES_00015349	chr13	+	205	1	Intergenic	novelGene_1043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATTCCACTTTTGTTTG	1260	False	NA	NA	False	NA	NA	NA	44809889	44810094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_44809900_44810100
ES_00015350	chr13	+	203	1	Intergenic	novelGene_1044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	318	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAGAGTTTTAATAACT	NA	False	NA	NA	False	NA	NA	NA	44956113	44956316	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_44956100_44956300
ES_00015351	chr13	+	472	1	Intergenic	novelGene_1045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTTTCGGACGAGCCCCT	NA	False	NA	NA	False	NA	NA	NA	45023047	45023519	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_45023000_45023500
ES_00015352	chr13	+	960	1	Intergenic	novelGene_1049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGGTTAAAACTGCTATT	NA	False	NA	NA	False	NA	NA	NA	50079185	50080145	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_50079200_50080100
ES_00015357	chr13	+	214	1	Intergenic	novelGene_1058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTGTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	54847709	54847923	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_54847700_54847900
ES_00015359	chr13	+	219	1	Intergenic	novelGene_1062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATCAGTTTTTAATGATT	6021	False	NA	NA	False	NA	NA	NA	55456012	55456231	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55456000_55456200
ES_00015361	chr13	+	200	1	Intergenic	novelGene_1066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTTCTTGATTAATGG	NA	False	NA	NA	False	NA	NA	NA	55566763	55566963	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55566800_55567000
ES_00015363	chr13	+	211	1	Intergenic	novelGene_1068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACAAGGAGAATCAGGC	1325	False	NA	NA	False	NA	NA	NA	55906624	55906835	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55906600_55906800
ES_00015364	chr13	+	244	1	Intergenic	novelGene_1074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTCCAGTTGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	58594136	58594380	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_58594100_58594400
ES_00015365	chr13	+	239	1	Intergenic	novelGene_1082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAGCCAATGATTTCA	NA	False	NA	NA	False	NA	NA	NA	62141783	62142022	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62141800_62142000
ES_00015366	chr13	+	1186	1	Intergenic	novelGene_1088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTATTGTGACACGCA	NA	False	NA	NA	False	TTTAAA	-7	NA	62663250	62664436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62663200_62664400
ES_00015368	chr13	+	226	1	Intergenic	novelGene_1091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCTCCCAGAGCACATT	NA	False	NA	NA	False	NA	NA	NA	62723341	62723567	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62723300_62723600
ES_00015369	chr13	+	231	1	Intergenic	novelGene_1093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTTACTTTTTAAATGA	NA	False	NA	NA	False	NA	NA	NA	64234515	64234746	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_64234500_64234700
ES_00015372	chr13	+	245	1	Intergenic	novelGene_1095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGGTACTTTCTTGATTC	NA	False	NA	NA	False	NA	NA	NA	64724537	64724782	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_64724500_64724800
ES_00015377	chr13	+	225	1	Intergenic	novelGene_1124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGTAAAATCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	66414984	66415209	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66415000_66415200
ES_00015378	chr13	+	4106	1	Intergenic	novelGene_1131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTTCACCTGTGTCGTT	NA	False	NA	19	True	NA	NA	NA	66725751	66729857	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66725800_66729900
ES_00015380	chr13	+	250	1	Intergenic	novelGene_1133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAACATGATTCTTGATGG	NA	False	NA	NA	False	NA	NA	NA	67011350	67011600	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_67011400_67011600
ES_00015381	chr13	+	282	1	Intergenic	novelGene_1134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGTACGGACAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	67383415	67383697	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_67383400_67383700
ES_00015382	chr13	+	375	1	Intergenic	novelGene_1135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGATTTAAAAAAGTGCA	NA	False	NA	NA	False	NA	NA	NA	67384367	67384742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_67384400_67384700
ES_00015384	chr13	+	220	1	Intergenic	novelGene_1137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCTTTTCTTAATGTTA	NA	False	NA	NA	False	NA	NA	NA	67618384	67618604	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_67618400_67618600
ES_00015387	chr13	+	201	1	Intergenic	novelGene_1144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTCAGGATGCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	75052329	75052530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_75052300_75052500
ES_00015388	chr13	+	210	1	Intergenic	novelGene_1145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTTTAGCTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	75508672	75508882	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_75508700_75508900
ES_00015390	chr13	+	248	1	Intergenic	novelGene_1147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTTATAAAATCCAACCA	NA	False	NA	NA	False	NA	NA	NA	76377348	76377596	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_76377300_76377600
ES_00015391	chr13	+	232	1	Intergenic	novelGene_1152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGGAATCCAACACATT	NA	False	NA	NA	False	NA	NA	NA	83064773	83065005	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_83064800_83065000
ES_00015392	chr13	+	225	1	Intergenic	novelGene_1155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGACTTTTCTCATGC	NA	False	NA	NA	False	NA	NA	NA	86705716	86705941	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_86705700_86705900
ES_00015395	chr13	+	220	1	Intergenic	novelGene_1160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCCTTCTCCCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	90438512	90438732	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_90438500_90438700
ES_00015396	chr13	+	214	1	Intergenic	novelGene_1165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACATAATGCATTGCCTG	6852	False	NA	NA	False	NA	NA	NA	92618025	92618239	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_92618000_92618200
ES_00015398	chr13	+	278	1	Intergenic	novelGene_1168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACAGAATTCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	95665108	95665386	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_95665100_95665400
ES_00015399	chr13	+	221	1	Intergenic	novelGene_1172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCTCTCTTATAATAGA	NA	False	NA	NA	False	NA	NA	NA	97511003	97511224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_97511000_97511200
ES_00015400	chr13	+	214	1	Intergenic	novelGene_1173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGTGATTCTTAAGTT	4216	False	NA	NA	False	NA	NA	NA	97583956	97584170	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_97584000_97584200
ES_00015401	chr13	+	253	1	Intergenic	novelGene_1174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTCAACACTCTTAAGA	703	False	NA	NA	False	NA	NA	NA	97848641	97848894	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_97848600_97848900
ES_00015402	chr13	+	267	1	Intergenic	novelGene_1175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATTATAAAGCAAAGCTT	NA	False	NA	NA	False	AATAAA	-44	NA	98232008	98232275	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_98232000_98232300
ES_00015403	chr13	+	204	1	Intergenic	novelGene_1180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACTCACTTTAGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	104073903	104074107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_104073900_104074100
ES_00015404	chr13	+	205	1	Intergenic	novelGene_1181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTATTTAGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	104416743	104416948	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_104416700_104416900
ES_00015406	chr13	+	233	1	Intergenic	novelGene_1184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGCATGAAGCGGTGCC	NA	False	NA	NA	False	NA	NA	NA	111646928	111647161	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_111646900_111647200
ES_00015409	chr13	+	494	1	Intergenic	novelGene_1186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATGAGTAAACACTGGGC	NA	False	NA	NA	False	NA	NA	NA	113903092	113903586	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_113903100_113903600
ES_00015412	chr13	+	332	1	Intergenic	novelGene_1187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGATGTTATATTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	120425220	120425552	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_120425200_120425600
ES_00015417	chr13	+	550	1	FSM	ENSMUSG00000113894.2	ENSMUST00000223046.2	1234	1	-237	921	-237	-921	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATGATGGCAAAAAAAAAAA	810	False	NA	NA	False	NA	NA	NA	3612147	3612697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_3612100_3612700
ES_00015422	chr13	+	903	1	FSM	ENSMUSG00000113936.2	ENSMUST00000222096.2	1435	1	248	284	248	-284	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACATGGTGCTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	9273820	9274723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_9273800_9274700
ES_00015423	chr13	+	225	1	FSM	ENSMUSG00000078141.4	ENSMUST00000104944.4	225	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	725	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGGGGCCGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	12717250	12717475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_12717200_12717500
ES_00015424	chr13	+	3328	6	ISM	ENSMUSG00000110123.2	ENSMUST00000209949.2	915	10	19887	-2661	19887	2661	3prime_fragment	FALSE	canonical	3	25	junction_1	14.4443760682142	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTCCTTATCGAGGGCT	5681	False	NA	NA	False	ATTAAA	-41	NA	13517835	13527673	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
ES_00015425	chr13	+	502	5	FSM	ENSMUSG00000019726.13	ENSMUST00000223053.2	2706	5	29	2175	17	-2175	multi-exon	FALSE	canonical	1	3	junction_4	4.03112887414927	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGCAAAAATCAACTCAGG	NA	False	NA	NA	False	AAGAAA	-11	NA	13765010	13808669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_13765082_13788426_13788513_13791131_13791331_13805593_13805685_13808614
ES_00015426	chr13	+	3395	12	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	139940	-4	-16399	4	3prime_fragment	FALSE	canonical	2	8	junction_3	4.59428318854301	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGACTTGTGAATGA	NA	False	NA	NA	False	AATAAA	-26	NA	13904921	13953392	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ES_00015427	chr13	+	625	1	Intergenic	novelGene_1011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTAATCATATCCACCCA	914	False	NA	NA	False	NA	NA	NA	14064713	14065338	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_14064700_14065300
ES_00015431	chr13	+	5695	23	FSM	ENSMUSG00000039219.19	ENSMUST00000039538.15	5844	23	-15	164	-7	72	multi-exon	FALSE	canonical	3	6	junction_16	16.774390161471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTACCTATCACAAGGG	1421	False	NA	81	True	NA	NA	NA	14238361	14374024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ES_00015433	chr13	+	2035	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804738	14812788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_14804870_14810884
ES_00015434	chr13	+	498	1	FSM	ENSMUSG00000113389.2	ENSMUST00000223112.2	497	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTACCCCTAACACC	NA	False	NA	NA	False	NA	NA	NA	15293215	15293713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_15293200_15293700
ES_00015436	chr13	+	601	2	FSM	ENSMUSG00000012429.10	ENSMUST00000221480.2	582	2	-19	0	-19	0	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATATTTGACATTTCC	NA	False	NA	-61	True	NA	NA	NA	17869757	17871841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_17869944_17871426
ES_00015437	chr13	+	984	1	FSM	ENSMUSG00000113750.2	ENSMUST00000222318.2	1049	1	45	20	45	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCTCAAGTTCTGACT	NA	False	NA	NA	False	AAGAAA	-36	NA	18124537	18125521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_18124500_18125500
ES_00015438	chr13	+	3186	30	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	298	junction_29	71.5253046363968	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901450	19050981	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289_19050795_19050816
ES_00015441	chr13	+	1446	6	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74231	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	30.6241734582339	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGGCATAATTGTGTC	NA	False	NA	25	True	AATAAA	-18	NA	21120571	21208424	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21189200_21189298_21197281_21197359_21207378
ES_00015443	chr13	+	349	1	FSM	ENSMUSG00000114279.2	ENSMUST00000224651.2	524	1	34	141	34	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGGTGTCGGAGGGCACCA	9055	False	NA	NA	False	NA	NA	NA	21906247	21906596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_21906200_21906600
ES_00015444	chr13	+	235	1	FSM	ENSMUSG00000067455.6	ENSMUST00000087714.6	774	1	80	459	80	-459	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCACCCTCTACGGGTTC	8343	False	NA	NA	False	NA	NA	NA	21919313	21919548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_21919300_21919500
ES_00015446	chr13	+	2852	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176580.8	2834	6	-18	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	30.2654919008431	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCACATTTTTGTCATG	NA	False	NA	NA	False	CATAAA	-13	NA	22129263	22144773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134372_22134500_22142593
ES_00015448	chr13	+	269	1	FSM	ENSMUSG00000061991.3	ENSMUST00000073261.3	399	1	23	107	23	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGGGCCGCGTGACCA	7440	False	NA	NA	False	NA	NA	NA	23718098	23718367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23718100_23718400
ES_00015449	chr13	+	7425	1	FSM	ENSMUSG00000052565.8	ENSMUST00000045301.9	7425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAAAGC	2268	False	NA	NA	False	NA	NA	NA	23737435	23744860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23737400_23744900
ES_00015450	chr13	+	1245	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	-143	36	-143	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTAGCTGTCCCTCCAGC	1770	False	NA	NA	False	ACTAAA	-29	NA	23765437	23766682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23765400_23766700
ES_00015451	chr13	+	507	1	FSM	ENSMUSG00000061615.3	ENSMUST00000078369.3	473	1	-36	2	-36	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCATAAAATGAGCTGCC	364	False	NA	NA	False	AAAACA	-28	NA	23935072	23935579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23935100_23935600
ES_00015452	chr13	+	369	1	FSM	ENSMUSG00000069267.3	ENSMUST00000091703.3	620	1	115	136	115	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGCTCGCCCGCCGCA	1656	False	NA	NA	False	NA	NA	NA	23936364	23936733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23936400_23936700
ES_00015454	chr13	+	205	1	FSM	ENSMUSG00000082861.4	ENSMUST00000118838.2	850	1	378	267	378	-267	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACATGCACCACTGTTG	4950	False	NA	NA	False	NA	NA	NA	29021235	29021440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_29021200_29021400
ES_00015455	chr13	+	821	5	FSM	ENSMUSG00000038732.16	ENSMUST00000222095.2	932	5	111	0	111	0	multi-exon	FALSE	canonical	1	2	junction_1	4.63680924774785	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATCATTTGCACCTACT	NA	False	NA	NA	False	NA	NA	NA	30415946	30429698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_30416051_30419672_30419738_30421945_30422079_30425146_30425299_30429331
ES_00015456	chr13	+	4024	1	FSM	ENSMUSG00000050295.5	ENSMUST00000062292.5	5844	1	-17	1837	-17	-1837	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGCCTTACGTGGCCT	NA	False	NA	NA	False	AATAAA	-20	NA	31990598	31994622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_31990600_31994600
ES_00015460	chr13	+	8594	14	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	192	0	-10	0	intron_retention	FALSE	canonical	3	139	junction_7	20.9341034293454	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059476	35090047	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346
ES_00015463	chr13	+	8436	13	FSM	ENSMUSG00000039087.18	ENSMUST00000128570.9	8436	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	29.1099448451708	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGACCAACCTGTGAGTTC	NA	False	NA	6	True	AATAAA	-22	NA	38010290	38135981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131640_38132618
ES_00015466	chr13	+	3741	4	FSM	ENSMUSG00000021431.16	ENSMUST00000223814.2	3740	4	-1	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	12.8149218578274	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATGAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	38388913	38398417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042
ES_00015467	chr13	+	2412	10	NIC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	6	0	intron_retention	FALSE	canonical	1	20	junction_5	82.099909023874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGCATAGGGGAAAATG	NA	False	NA	-64	True	AATAAA	-21	NA	38388932	38410956	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399039_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ES_00015469	chr13	+	817	1	FSM	ENSMUSG00000114936.2	ENSMUST00000224038.2	2340	1	662	861	662	-861	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATACTAATTTTAACCAA	NA	False	NA	NA	False	NA	NA	NA	40877247	40878064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_40877200_40878100
ES_00015470	chr13	+	3136	9	FSM	ENSMUSG00000038683.17	ENSMUST00000174551.8	3136	9	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	45.5981085134022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAATACAGAGCTTAATT	NA	False	NA	NA	False	AGTAAA	-20	NA	41154713	41166483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41164759_41165809_41165934_41166040
ES_00015471	chr13	+	2168	16	Fusion	ENSMUSG00000038651.16_ENSMUSG00000114388.2	novel	2641	29	NA	NA	-2334	0	multi-exon	FALSE	canonical	2	6	junction_6	9.146705539276	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTAGTGTGGTTAATTG	NA	False	NA	4	True	AATAAA	-16	NA	41299937	41332506	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_41300150_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327290_41327389_41327673_41327774_41327873_41327933_41330358_41330421_41331657
ES_00015472	chr13	+	2295	17	Fusion	ENSMUSG00000038651.16_ENSMUSG00000114388.2	novel	2641	29	NA	NA	-2334	0	multi-exon	FALSE	canonical	3	6	junction_7	9.00498993614096	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTAGTGTGGTTAATTG	NA	False	NA	4	True	AATAAA	-16	NA	41299937	41332506	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_41300150_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327290_41327389_41327673_41327774_41327873_41327933_41330358_41330421_41331657
ES_00015473	chr13	+	7544	3	FSM	ENSMUSG00000087370.4	ENSMUST00000129449.3	7168	3	-376	0	-67	0	multi-exon	FALSE	canonical	3	21	junction_2	1.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGCTGAACTCCTGGC	NA	False	NA	NA	False	AATAAA	-18	NA	41759315	41794831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_41759789_41781453_41781625_41787931
ES_00015474	chr13	+	7373	2	FSM	ENSMUSG00000087370.4	ENSMUST00000221694.2	602	2	-67	-6704	-67	0	multi-exon	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGCTGAACTCCTGGC	NA	False	NA	NA	False	AATAAA	-18	NA	41759315	41794831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_41759789_41787931
ES_00015476	chr13	+	2312	4	ISM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	112301	-4	0	4	3prime_fragment	FALSE	canonical	3	19	junction_3	2.44948974278318	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGCTTACGTCTCGTGC	NA	False	NA	6	True	AGTAAA	-19	NA	42317797	42338506	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_42317869_42321037_42321140_42334907_42335408_42336867
ES_00015477	chr13	+	2151	5	FSM	ENSMUSG00000021367.9	ENSMUST00000021796.9	2139	5	-13	1	-13	-1	multi-exon	FALSE	canonical	1	1	junction_4	2.44948974278318	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTTGTGAATTATTTC	NA	False	NA	NA	False	AATAAA	-17	NA	42454938	42461465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_42455435_42457032_42457202_42458421_42458581_42458730_42458845_42460252
ES_00015479	chr13	+	802	4	NNC	ENSMUSG00000054021.7	novel	1548	9	NA	NA	3234	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	91.3649580285328	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTTATTTTTTTGTAC	4681	False	NA	7	True	ATTAAA	-19	NA	43536382	43548676	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_43536481_43536584_43536709_43538973_43539090_43548212
ES_00015481	chr13	+	206	1	Intergenic	novelGene_1039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCCAGGGCAGTGGCTC	NA	False	NA	NA	False	AAAAAG	-1	NA	43817514	43817720	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_43817500_43817700
ES_00015482	chr13	+	5707	17	NIC	ENSMUSG00000038518.16	novel	5997	18	NA	NA	21	0	intron_retention	FALSE	canonical	0	0	junction_3	202.158730565242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTGTGGGAAGGG	NA	False	NA	16	True	AATAAA	-18	NA	44884866	45075119	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_44885393_44976855_44976992_45001755_45001898_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ES_00015484	chr13	+	4980	22	NNC	ENSMUSG00000038080.18	novel	4987	21	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	24	junction_1	11.7560232065377	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGTTTTTGAAGCTGTG	1148	False	NA	NA	False	TATAAA	-20	NA	47196961	47238755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_47197096_47197115_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
ES_00015485	chr13	+	4494	9	FSM	ENSMUSG00000037933.17	ENSMUST00000110084.4	4488	9	-6	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	16.5562488203095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGTGCCCTCTGTGATTG	1428	False	NA	17	True	AATAAA	-24	NA	49495060	49540501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49495118_49495221_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49538446
ES_00015486	chr13	+	4765	17	FSM	ENSMUSG00000021392.9	ENSMUST00000223467.2	4765	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	42.1305634308396	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTATTCCTAATTA	NA	False	NA	7	True	AATAAA	-13	NA	49806578	49832455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49807340_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ES_00015487	chr13	+	4259	18	FSM	ENSMUSG00000021392.9	ENSMUST00000021824.8	4242	18	-17	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	39.8711592828771	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGTCTTTTATTTAAAA	NA	False	NA	22	True	ATTAAA	-15	NA	49806808	49832491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49806874_49807004_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ES_00015488	chr13	+	2432	1	FSM	ENSMUSG00000021392.9	ENSMUST00000223346.2	3239	1	838	-31	838	31	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATTGGAGTCTGTTTTC	2238	False	NA	NA	False	NA	NA	NA	49820830	49823262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49820800_49823300
ES_00015489	chr13	+	4391	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	43	junction_17	321.82444210084	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835614	49887743	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ES_00015490	chr13	+	4417	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_14	424.884403876494	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835584	49887743	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861885_49861956_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ES_00015492	chr13	+	717	1	FSM	ENSMUSG00000113254.2	ENSMUST00000222073.2	919	1	121	81	121	-81	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGGACATTACAGACTC	4309	False	NA	NA	False	NA	NA	NA	49974324	49975041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49974300_49975000
ES_00015493	chr13	+	3270	8	FSM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.45229884959845	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATGTGTGTATAAT	NA	False	NA	NA	False	NA	NA	NA	52250776	52278194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276778_52277083
ES_00015494	chr13	+	2837	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	54225899	54262361	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ES_00015495	chr13	+	2377	1	FSM	ENSMUSG00000021474.10	ENSMUST00000223504.2	3929	1	460	1092	460	-1092	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCAGGTCCCGTAGGCAT	NA	False	NA	NA	False	TTTAAA	-33	NA	54240424	54242801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_54240400_54242800
ES_00015497	chr13	+	204	2	Intergenic	novelGene_1056	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGGCCTTCTTAATCCC	NA	False	NA	NA	False	NA	NA	NA	54665286	54678867	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_54665318_54678694
ES_00015499	chr13	+	725	4	FSM	ENSMUSG00000025876.16	ENSMUST00000142906.2	898	4	173	0	173	0	multi-exon	FALSE	canonical	2	6	junction_2	2.94392028877595	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGGGTGGAGCTAGACA	NA	False	NA	NA	False	NA	NA	NA	55150995	55152466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55151230_55151354_55151505_55151590_55151756_55152290
ES_00015500	chr13	+	3471	6	FSM	ENSMUSG00000021481.12	ENSMUST00000162476.8	1112	6	-54	-2305	-32	235	multi-exon	FALSE	canonical	2	4	junction_3	25.663982543635	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAATAGTCTGTCTTTGT	5162	False	NA	NA	False	AATAAA	-30	NA	55253091	55282873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55270142_55270329_55278346_55278441_55280119
ES_00015505	chr13	+	851	6	NIC	ENSMUSG00000021488.9	novel	2013	2	NA	NA	15	-1	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	117.080485137362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTTGTTGTCTTTTTTT	NA	False	NA	NA	False	AATACA	-13	NA	55359368	55388658	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55359403_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ES_00015506	chr13	+	950	6	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-104	2	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	108.536445491825	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTCTTTTTTTTCCC	NA	False	NA	NA	False	AATACA	-17	NA	55359527	55388662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55359657_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ES_00015507	chr13	+	3498	7	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-89	-16936	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	80.8532621481657	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTCTTTATGTTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	55359542	55408467	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55359657_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156
ES_00015509	chr13	+	1207	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	0	-3	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5553	False	NA	18	True	NA	NA	NA	55469831	55473085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
ES_00015510	chr13	+	2769	16	FSM	ENSMUSG00000074886.12	ENSMUST00000225925.2	2769	16	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_8	142.105125406041	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCTGCCTCCTTTTATT	112	False	NA	26	True	AATACA	-28	NA	55593269	55608738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55600049_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607596
ES_00015512	chr13	+	900	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	-12	2619	-7	0	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCTCACTGGGCTG	NA	False	NA	NA	False	AATAAA	-26	NA	56670313	56675280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
ES_00015513	chr13	+	4433	7	FSM	ENSMUSG00000021540.17	ENSMUST00000109874.2	4534	7	101	0	101	0	multi-exon	FALSE	canonical	1	1	junction_1	31.6052035096895	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAAAAGAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	56851581	56888117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_56851626_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
ES_00015514	chr13	+	326	1	FSM	ENSMUSG00000114886.2	ENSMUST00000223945.2	558	1	-36	268	-36	-268	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGAGAGAGTAACGCTG	1888	False	NA	NA	False	AAAAAG	-32	NA	58366496	58366822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_58366500_58366800
ES_00015519	chr13	+	4287	4	FSM	ENSMUSG00000091311.4	ENSMUST00000165133.3	4287	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	0.471404520791032	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTCTTGTGCACTTTGT	NA	False	NA	NA	False	AGTAAA	-14	NA	59860097	59867109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59860315_59861449_59861490_59861948_59862010_59863140
ES_00015521	chr13	+	900	1	FSM	ENSMUSG00000114277.2	ENSMUST00000225897.2	220	1	-5	-675	-5	675	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAAGGTTGCTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	60789598	60790498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_60789600_60790500
ES_00015522	chr13	+	251	2	Intergenic	novelGene_1077	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACTATGAATTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	61765157	61776998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_61765281_61776870
ES_00015523	chr13	+	575	2	Intergenic	novelGene_1078	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTATGATTCTGTT	NA	False	NA	NA	False	NA	NA	NA	61779247	61782158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_61779363_61781698
ES_00015524	chr13	+	3319	4	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	-2	118742	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	20.7417989148054	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAATGAACCCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	61803114	62010326	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_61803248_61803432_61803494_61891398_61894418_62010220
ES_00015526	chr13	+	1712	6	Fusion	ENSMUSG00000113626.2_ENSMUSG00000113295.2	novel	2239	3	NA	NA	35763	479	multi-exon	TRUE	canonical	0	0	junction_1	30.8	55	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAAACCAGTCGTT	NA	False	NA	NA	False	NA	NA	NA	61838879	62009968	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_61838920_61889975_61890009_62006127_62006156_62007517_62008042_62008125_62008366_62009121
ES_00015529	chr13	+	2551	5	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	9267	478	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	31.036269105677	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTTTAAAACCAGTCGT	NA	False	NA	NA	False	NA	NA	NA	61961346	62009967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_61961428_62005782_62005910_62006094_62006156_62007517_62009074_62009241
ES_00015531	chr13	+	356	4	Fusion	ENSMUSG00000074867.5_ENSMUSG00000113566.2	novel	886	4	NA	NA	0	-176	multi-exon	FALSE	canonical	3	172	junction_3	163.456416209337	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTCATACAGAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	62245583	62354123	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_62245653_62254561_62254689_62254881_62254943_62354024
ES_00015532	chr13	+	843	1	FSM	ENSMUSG00000113504.2	ENSMUST00000221048.2	278	1	-79	-486	-79	486	mono-exon	FALSE	NA	NA	NA	NA	NA	1203	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTCCAGGTAATACAGAT	9845	False	NA	NA	False	AATAAA	-28	NA	62273463	62274306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62273500_62274300
ES_00015533	chr13	+	4096	3	NIC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-60	2643	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	11	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAGATGTTTATTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	62367309	62386601	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_62367452_62381070_62381198_62382774
ES_00015534	chr13	+	264	2	Antisense	novelGene_ENSMUSG00000074865.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	113	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCATTATGATTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	62628933	62656887	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_62628985_62656674
ES_00015536	chr13	+	1481	4	FSM	ENSMUSG00000021458.18	ENSMUST00000221364.2	1481	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	51.6333225737023	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAATGTTTATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	63420847	63447486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525
ES_00015537	chr13	+	2352	1	FSM	ENSMUSG00000114104.2	ENSMUST00000220661.2	2312	1	81	-121	81	121	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCACGCATAATGTCTGT	NA	False	NA	NA	False	TTTAAA	-21	NA	63421494	63423846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_63421500_63423800
ES_00015543	chr13	+	1307	2	FSM	ENSMUSG00000021476.10	ENSMUST00000221264.2	471	2	-377	-459	0	459	multi-exon	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAGGGTTTTATTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	64309682	64311891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_64310149_64311050
ES_00015545	chr13	+	225	1	Intergenic	novelGene_1096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGAGCCACCATGTG	NA	False	NA	NA	False	NA	NA	NA	65310090	65310315	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65310100_65310300
ES_00015546	chr13	+	202	2	Intergenic	novelGene_1097	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	57	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTGTATATCTGGTAT	NA	False	NA	NA	False	NA	NA	NA	65352219	65373120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65352273_65372971
ES_00015548	chr13	+	9407	8	NIC	ENSMUSG00000021514.19	novel	2909	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	15.7829667938676	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65426665	65452034	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
ES_00015551	chr13	+	2636	3	Antisense	novelGene_ENSMUSG00000113406.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	4	junction_1	10	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATTAATTAATATTACAG	NA	False	NA	NA	False	NA	NA	NA	65484233	65487289	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_65485768_65485851_65486356_65486691
ES_00015552	chr13	+	200	2	Intergenic	novelGene_1098	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	30	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACTAGAGAATTCACGGA	NA	False	NA	NA	False	NA	NA	NA	65519781	65522000	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65519836_65521854
ES_00015556	chr13	+	2202	5	Intergenic	novelGene_1114	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_3	30.4497536935851	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTGAGAGGAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	65950175	65952965	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65951584_65951751_65952088_65952171_65952424_65952675_65952844_65952927
ES_00015557	chr13	+	2160	1	FSM	ENSMUSG00000114625.2	ENSMUST00000225676.2	682	1	-1173	-305	-1173	305	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66054863	66057023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_66054900_66057000
ES_00015558	chr13	+	555	3	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81617	-1198	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	37	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	NA	False	NA	NA	False	NA	NA	NA	66098405	66186863	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66098504_66186206_66186334_66186533
ES_00015559	chr13	+	451	4	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81615	2080	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	52.083266666624	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66098407	66190141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66098504_66186206_66186334_66186533_66186595_66189974
ES_00015560	chr13	+	601	2	Intergenic	novelGene_1120	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCGGTTCGTAAATGA	4232	False	NA	-8	True	AATAAA	-5	NA	66117682	66121091	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66117781_66120588
ES_00015564	chr13	+	2106	5	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	0	1620	multi-exon	FALSE	canonical	3	19	junction_4	48.2415795761291	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCCTTCCTTCCTTC	NA	False	NA	NA	False	AAGAAA	-42	NA	66261293	66327534	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840
ES_00015567	chr13	+	670	1	Intergenic	novelGene_1123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	482	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTCCTCGGTTTCTAA	NA	False	NA	18	True	AATAAA	-36	NA	66327561	66328231	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66327600_66328200
ES_00015568	chr13	+	574	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47316	-4283	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0.5	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGTCATGGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	66439399	66448944	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66439588_66448255_66448445_66448747
ES_00015569	chr13	+	533	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47329	128	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	29	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439412	66599466	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66439588_66448255_66448445_66599297
ES_00015571	chr13	+	1152	3	Intergenic	novelGene_1128	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_2	22	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAACACATACTTAAATGGA	NA	False	NA	NA	False	NA	NA	NA	66610011	66612772	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66610037_66610237_66610441_66611848
ES_00015577	chr13	+	2126	5	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24276	489	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	17.0202085768653	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTTCCTCGGTTTATAA	NA	False	NA	NA	False	AATAAA	-36	NA	66901228	66927695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66901313_66924718_66924862_66925311_66925946_66926302_66927256_66927383
ES_00015580	chr13	+	7593	4	FSM	ENSMUSG00000057396.8	ENSMUST00000052716.8	3482	4	-14	-4097	-13	4097	multi-exon	FALSE	canonical	1	3	junction_2	3.29983164553722	3068	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGGGTCAGAGAAGAACCA	NA	False	NA	NA	False	NA	NA	NA	67276277	67293948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67276379_67284781_67284909_67285373_67285470_67286679
ES_00015581	chr13	+	2743	4	FSM	ENSMUSG00000058900.6	ENSMUST00000225334.2	397	4	-17	-2329	0	97	multi-exon	FALSE	canonical	3	9	junction_1	8.28653526310404	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCATTTGATTGGTGAA	NA	False	NA	NA	False	NA	NA	NA	67321245	67332205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67321373_67324511_67324639_67325128_67325225_67329812
ES_00015583	chr13	+	682	1	FSM	ENSMUSG00000097906.2	ENSMUST00000180422.2	955	1	360	-87	360	87	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCACATTCCCCATCAGAT	NA	False	NA	NA	False	AATAAA	-35	NA	67958724	67959406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67958700_67959400
ES_00015584	chr13	+	2344	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGGTGTGTACTCTTGT	NA	False	NA	NA	False	AATAAA	-11	NA	68730354	68740454	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ES_00015586	chr13	+	5128	6	FSM	ENSMUSG00000021532.12	ENSMUST00000221006.2	5134	6	0	6	0	-4	multi-exon	FALSE	canonical	3	16	junction_3	61.9657970173869	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAGAGGTGTGTACTCT	NA	False	NA	NA	False	AATAAA	-8	NA	68730394	68740451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_68730718_68731657_68733122_68733296_68735954_68737341_68737509_68738224_68738340_68740049
ES_00015588	chr13	+	2890	7	ISM	ENSMUSG00000021608.16	ENSMUST00000223060.2	2141	14	31128	-1297	18	0	3prime_fragment	FALSE	canonical	3	461	junction_3	66.9238788143332	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTCGAGTGTGTTTTGT	2810	False	NA	23	True	AATAAA	-23	NA	73650997	73664541	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
ES_00015590	chr13	+	672	3	FSM	ENSMUSG00000017756.10	ENSMUST00000223008.2	736	3	0	64	0	-64	multi-exon	FALSE	canonical	3	707	junction_2	10.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGCTCTGCTGTGCCAC	1668	False	NA	NA	False	NA	NA	NA	73945730	73947524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_73945821_73946537_73946657_73947061
ES_00015592	chr13	+	4579	13	FSM	ENSMUSG00000057649.7	ENSMUST00000222191.2	4569	13	-10	0	0	0	multi-exon	FALSE	canonical	3	136	junction_2	11.6141675934562	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74085929	74108936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74086065_74086552_74086768_74086983_74088910_74090062_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ES_00015596	chr13	+	491	4	FSM	ENSMUSG00000062382.10	ENSMUST00000221435.2	491	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	41.4085337420521	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTCTCTGGGCTTCTTTT	1247	False	NA	NA	False	NA	NA	NA	74547812	74554814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74547912_74553897_74554023_74554221_74554283_74554608
ES_00015597	chr13	+	5397	19	FSM	ENSMUSG00000021583.8	ENSMUST00000169114.3	5644	19	247	0	-38	0	multi-exon	TRUE	canonical	1	4	junction_16	2.26077666104176	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGC	NA	False	NA	NA	False	NA	NA	NA	74787933	74841320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74788013_74794289_74794834_74805751_74805891_74808388_74808524_74810427_74810549_74811527_74811683_74812227_74812342_74814217_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426_74819611_74820862_74821020_74821713_74821899_74822740_74822903_74823381_74823523_74823943_74824026_74838692
ES_00015598	chr13	+	407	2	Genic_Genomic	ENSMUSG00000074800.5	novel	276	1	NA	NA	-32	4063	multi-exon	FALSE	non_canonical	0	0	junction_1	0	555	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTACTTTTTCTAGCT	3131	False	NA	NA	False	NA	NA	NA	75792982	75797353	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_75793365_75797328
ES_00015600	chr13	+	586	4	FSM	ENSMUSG00000001542.8	ENSMUST00000220572.2	586	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	187.92965587037	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGACTGGCCAGGTTACA	6280	False	NA	NA	False	TTTAAA	-25	NA	75855703	75910061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_75855917_75873071_75873120_75904393_75904654_75909996
ES_00015601	chr13	+	3411	13	NNC	ENSMUSG00000001542.8	novel	4382	12	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	123.090385715358	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATTTTGACGTGTATCA	6406	False	NA	NA	False	AATAAA	-32	NA	75855829	75920486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798_75919544_75919563
ES_00015603	chr13	+	6572	45	NNC	ENSMUSG00000033991.10	novel	6976	45	NA	NA	70	-56	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	48.1554387477856	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGACCCCTTTTTAGT	NA	False	NA	NA	False	ATTAAA	-21	NA	76246922	76338169	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_76246949_76247489_76247560_76252823_76252888_76254355_76254498_76256311_76256403_76259852_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ES_00015607	chr13	+	292	2	Intergenic	novelGene_1149	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAAAAAACCTTGAGACT	NA	False	NA	NA	False	NA	NA	NA	80849246	80853492	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_80849433_80853386
ES_00015608	chr13	+	370	2	FSM	ENSMUSG00000035840.8	ENSMUST00000224592.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTAAACGCAGTAGCCCT	418	False	NA	NA	False	NA	NA	NA	81805910	81813352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_81806056_81813127
ES_00015609	chr13	+	4062	3	FSM	ENSMUSG00000035840.8	ENSMUST00000049055.8	2338	3	-37	-1687	0	0	multi-exon	FALSE	canonical	2	14	junction_2	38	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGTTGTTGAATATAAT	418	False	NA	27	True	AATAAA	-29	NA	81805910	81820990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_81806056_81813123_81813389_81817338
ES_00015613	chr13	+	1541	4	FSM	ENSMUSG00000012422.15	ENSMUST00000012566.9	1541	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	564.815013964749	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGTTCTCTCACTCCAG	NA	False	NA	-32	True	AATACA	-25	NA	90237880	90252780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90251406
ES_00015614	chr13	+	1170	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	-285	-227	-26	0	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTCTATAGGATAATT	NA	False	NA	27	True	AATAAA	-23	NA	91071050	91073069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
ES_00015615	chr13	+	307	1	NIC	ENSMUSG00000114688.2	novel	949	4	NA	NA	3045	-12227	mono-exon	FALSE	NA	NA	NA	NA	NA	855	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCCCGGGTAGCGCGGAA	NA	False	NA	NA	False	NA	NA	NA	91410539	91410846	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_91410500_91410800
ES_00015617	chr13	+	5713	5	FSM	ENSMUSG00000007617.19	ENSMUST00000102752.10	5713	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6.83282518435822	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAGTATATTGATTTT	NA	False	NA	17	True	ATTAAA	-17	NA	93441002	93496970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447
ES_00015620	chr13	+	3989	8	FSM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	49	0	-17	0	multi-exon	FALSE	canonical	0	0	junction_4	3.27014946921703	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTTGGACATGGGG	NA	False	NA	NA	False	AATAAA	-21	NA	93908186	94079524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_93908601_93926546_93926734_93930535_93930727_93944003_93944212_93998594_93998839_94016995_94017067_94075734_94075858_94076973
ES_00015621	chr13	+	464	1	FSM	ENSMUSG00000113070.2	ENSMUST00000220923.2	600	1	-173	309	-173	-309	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCATCTCCTGTCCTGA	NA	False	NA	NA	False	AAAACA	-36	NA	95160635	95161099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_95160600_95161100
ES_00015622	chr13	+	1952	2	FSM	ENSMUSG00000041995.9	ENSMUST00000221807.2	1945	2	-7	0	-7	0	multi-exon	FALSE	canonical	3	15	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95460112	95474349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_95460279_95472563
ES_00015623	chr13	+	528	1	FSM	ENSMUSG00000113743.2	ENSMUST00000221090.2	701	1	23	150	23	-150	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGGCCGAGGAATACCT	NA	False	NA	NA	False	NA	NA	NA	96513460	96513988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_96513500_96514000
ES_00015624	chr13	+	230	2	Intergenic	novelGene_1169	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTATTTTGTTAATTT	NA	False	NA	NA	False	NA	NA	NA	96900939	96901442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_96900983_96901255
ES_00015625	chr13	+	3074	20	FSM	ENSMUSG00000021666.17	ENSMUST00000042084.13	3074	20	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	59.2215428348002	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACAGCCTAACA	NA	False	NA	NA	False	AATAAA	-15	NA	97274444	97312949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ES_00015626	chr13	+	3113	21	NIC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	43.0145033680502	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274496	97312959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ES_00015630	chr13	+	5900	6	NNC	ENSMUSG00000114926.2	novel	463	2	NA	NA	-12209	-2488	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	3.2	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGGCAGCCATGGTTTG	NA	False	NA	8	True	NA	NA	NA	97635502	97649750	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_97635936_97636752_97636894_97638796_97638947_97640400_97640521_97643210_97643625_97645108
ES_00015635	chr13	+	3242	11	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4466	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.9177977950463	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104320071	104339525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_104320173_104320495_104320549_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ES_00015636	chr13	+	1103	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	135.125547474365	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365437	104386125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_104365593_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ES_00015637	chr13	+	1110	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	143.102139125249	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365470	104386125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_104365633_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ES_00015639	chr13	+	2049	8	FSM	ENSMUSG00000021718.6	ENSMUST00000022232.6	2157	8	12	96	12	-96	multi-exon	FALSE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCACAGTACTTATTT	NA	False	NA	NA	False	ATTAAA	-45	NA	105218641	105258194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_105218859_105236941_105237094_105245783_105246365_105247605_105247754_105248859_105249026_105255158_105255307_105256318_105256506_105257744
ES_00015641	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	-16	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ES_00015643	chr13	+	889	2	Genic_Genomic	ENSMUSG00000059751.8	novel	795	1	NA	NA	0	7919	multi-exon	FALSE	non_canonical	0	0	junction_1	0	627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAAGAAAGAACTCTA	NA	False	NA	NA	False	NA	NA	NA	108807136	108815850	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_108807975_108815799
ES_00015647	chr13	+	464	4	NNC	ENSMUSG00000086649.2	novel	621	4	NA	NA	16	19	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	12.0277457017791	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACAGATTTGGGGTGA	877	False	NA	16	True	NA	NA	NA	111716810	111781383	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_111716936_111717450_111717511_111778756_111778863_111781210
ES_00015649	chr13	+	1870	2	Intergenic	novelGene_1185	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTTGTAACTTAGTCTG	1759	False	NA	5	True	AATAAA	-16	NA	113872438	113876379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_113873083_113875153
ES_00015653	chr13	+	1841	11	NNC	ENSMUSG00000025451.16	novel	1731	11	NA	NA	5	15	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	104.451376247515	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTTTGGCTGCAATA	NA	False	NA	52	True	NA	NA	NA	119565673	119593870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_119566087_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ES_00015654	chr13	+	1731	11	FSM	ENSMUSG00000025451.16	ENSMUST00000126957.9	1731	11	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	97.4055953218294	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGATTTTGAAATAAATGAA	NA	False	NA	75	True	AATAAA	-2	NA	119565668	119593893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_119565949_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ES_00015655	chr13	+	2627	14	NIC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	48	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	45.0708843421628	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599367	119622653	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_119599656_119601100_119601227_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ES_00015656	chr13	+	2270	6	NIC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	10636	-4	intron_retention	FALSE	canonical	2	4	junction_3	51.8636674368483	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAACTATTTCATTTCT	NA	False	NA	5	True	AATAAA	-15	NA	119609955	119622649	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_119611461_119612472_119612543_119614219_119614391_119617470_119617567_119620988_119621030_119622262
ES_00015659	chr13	-	625	1	FSM	ENSMUSG00000113128.2	ENSMUST00000223370.2	1040	1	420	-5	420	5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCGGCACTTTTTATAAA	NA	False	NA	NA	False	ATTAAA	-26	NA	3949828	3949203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_3949200_3949800
ES_00015662	chr13	-	8681	16	FSM	ENSMUSG00000021196.15	ENSMUST00000151894.9	8681	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	287.28448153935	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACTTCCAGCAAAGATAT	NA	False	NA	NA	False	NA	NA	NA	6698761	6638990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_6646099_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ES_00015663	chr13	-	3792	14	NIC	ENSMUSG00000021156.18	novel	3770	14	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	7	junction_8	45.1586290220145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCAGTAAGCTGCTTC	NA	False	NA	3	True	AATAAA	-23	NA	9814480	9734867	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745218_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814381
ES_00015664	chr13	-	4245	15	NIC	ENSMUSG00000021156.18	novel	4117	15	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	40.2020407645265	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCAGTAAGCTGCTT	NA	False	NA	2	True	AATAAA	-22	NA	9814983	9734868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814763
ES_00015666	chr13	-	434	4	FSM	ENSMUSG00000021313.17	ENSMUST00000221018.2	1572	4	80	1058	80	-1058	multi-exon	FALSE	canonical	1	2	junction_2	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGTTCCTCGTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	11844460	11825768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_11825865_11839159_11839296_11842419_11842604_11844442
ES_00015667	chr13	-	1237	8	ISM	ENSMUSG00000052374.17	ENSMUST00000168193.8	2920	22	60151	-9	1979	0	3prime_fragment	FALSE	canonical	2	8	junction_7	19.7173910597747	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGACAAACTTTATTAAG	NA	False	NA	3	True	AATAAA	-29	NA	12295454	12284311	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679_12293863_12295314
ES_00015668	chr13	-	671	4	FSM	ENSMUSG00000052374.17	ENSMUST00000110616.2	1361	4	9	681	1	-681	multi-exon	FALSE	canonical	0	0	junction_3	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGTTCATGGGGGTGGT	NA	False	NA	NA	False	NA	NA	NA	12355604	12323785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12323873_12324480_12324601_12325732_12325848_12355255
ES_00015669	chr13	-	4165	9	NIC	ENSMUSG00000057554.14	novel	2792	10	NA	NA	-3	306	intron_retention	FALSE	canonical	0	0	junction_4	19.6532440070335	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGAAACTCCTGCTGAA	NA	False	NA	NA	False	NA	NA	NA	12476390	12453989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ES_00015670	chr13	-	438	1	NIC	ENSMUSG00000097715.3	novel	1942	7	NA	NA	1924	44	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGCTAAAGTATACTAGG	NA	False	NA	NA	False	TATAAA	-26	NA	12630790	12630352	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_12630400_12630800
ES_00015672	chr13	-	220	1	FSM	ENSMUSG00000113308.2	ENSMUST00000223203.2	193	1	8	-35	8	35	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCCTTGCCATTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	12694820	12694600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12694600_12694800
ES_00015673	chr13	-	1855	17	FSM	ENSMUSG00000039233.13	ENSMUST00000162326.2	1853	17	0	-2	0	0	multi-exon	FALSE	canonical	2	7	junction_4	33.754571449657	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTCTCTGCCCTTTCT	NA	False	NA	-4	True	AATAAA	-15	NA	14214223	14172535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ES_00015675	chr13	-	762	3	FSM	ENSMUSG00000021302.11	ENSMUST00000222687.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	137.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAAGTTCTCATTCCCC	NA	False	NA	NA	False	AATACA	-34	NA	14237994	14228553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14229041_14229734_14229806_14237790
ES_00015676	chr13	-	1174	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	520.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGTTGTTGAAAATGTA	NA	False	NA	NA	False	AATAAA	-24	NA	14787610	14784497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_14785326_14786007_14786190_14787446
ES_00015678	chr13	-	355	1	FSM	ENSMUSG00000113240.2	ENSMUST00000221976.2	246	1	-118	9	-118	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATGATTTCTAATTGTG	NA	False	NA	NA	False	NA	NA	NA	15293334	15292979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_15293000_15293300
ES_00015679	chr13	-	497	1	FSM	ENSMUSG00000112969.2	ENSMUST00000221425.2	256	1	31	-272	31	272	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGTAGCACTGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	16606334	16605837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_16605800_16606300
ES_00015680	chr13	-	2919	3	FSM	ENSMUSG00000041297.9	ENSMUST00000222848.2	1062	3	-1857	0	-228	0	multi-exon	FALSE	canonical	3	79	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACAGTTTGTAATTATTA	NA	False	NA	NA	False	AATAAA	-16	NA	17979910	17940817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_17941192_17946885_17947543_17978022
ES_00015684	chr13	-	2815	5	ISM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	5834	6	-2116	-6	3prime_fragment	FALSE	canonical	3	91	junction_4	8.31790237980706	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCTGTTGGTTCTTA	NA	False	NA	-4	True	AATAAA	-17	NA	21581049	21571178	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269
ES_00015688	chr13	-	4372	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	0	-6	0	6	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGAGGATAGTTAAGTA	NA	False	NA	NA	False	AATAAA	-20	NA	21637900	21626343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
ES_00015689	chr13	-	520	1	FSM	ENSMUSG00000114702.3	ENSMUST00000076238.4	345	1	46	-221	46	221	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGGTGGAAGCATTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	21663565	21663045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21663000_21663600
ES_00015690	chr13	-	730	2	FSM	ENSMUSG00000063894.16	ENSMUST00000110481.3	728	2	2	-4	2	4	multi-exon	FALSE	canonical	3	17	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGATGAAAATTTTAATT	6600	False	NA	NA	False	AATAAA	-25	NA	21715241	21710588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21711192_21715114
ES_00015691	chr13	-	459	1	Genic_Genomic	ENSMUSG00000069307.8	novel	NA	NA	NA	NA	-2	-2464	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTTCAGCGTAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	21994369	21993910	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_21993900_21994400
ES_00015692	chr13	-	489	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	0	-7	0	7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTAAAGAACTGAATAC	NA	False	NA	NA	False	AAAAAG	-26	NA	22017677	22017188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22017200_22017700
ES_00015693	chr13	-	508	1	FSM	ENSMUSG00000078917.4	ENSMUST00000141391.2	576	1	-125	193	-125	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACCAGAAGAAAAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	22137923	22137415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22137400_22137900
ES_00015694	chr13	-	1287	1	FSM	ENSMUSG00000081265.2	ENSMUST00000119018.2	1416	1	-93	222	-93	-222	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCATCATCGAAACCCCT	NA	False	NA	NA	False	NA	NA	NA	22142386	22141099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22141100_22142400
ES_00015695	chr13	-	1159	5	FSM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.63680924774785	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATTACTGTCCTTTGT	NA	False	NA	NA	False	TATAAA	-8	NA	22190582	22186720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151
ES_00015696	chr13	-	730	1	FSM	ENSMUSG00000060639.6	ENSMUST00000102977.4	727	1	10	-13	10	13	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTTTTTTACCCTTATC	NA	False	NA	NA	False	ATTAAA	-29	NA	22225522	22224792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22224800_22225500
ES_00015697	chr13	-	4941	6	NNC	ENSMUSG00000046351.12	novel	815	5	NA	NA	0	48095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.346972212601	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCCTGGCCCAGTTGG	9020	False	NA	NA	False	NA	NA	NA	23553364	23489177	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_23489218_23537276_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
ES_00015700	chr13	-	208	1	FSM	ENSMUSG00000113440.2	ENSMUST00000221461.2	4114	1	162	3744	162	-3744	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGCAAGGCAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	23629943	23629735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23629700_23629900
ES_00015701	chr13	-	371	1	FSM	ENSMUSG00000069274.4	ENSMUST00000102971.2	391	1	-8	28	-8	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTCATAAAAAGCTGTT	9688	False	NA	NA	False	NA	NA	NA	23735830	23735459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23735500_23735800
ES_00015702	chr13	-	477	1	FSM	ENSMUSG00000069273.3	ENSMUST00000105107.2	836	1	-5	364	-5	-364	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTATCCACCAAAGATGCT	5654	False	NA	NA	False	NA	NA	NA	23746548	23746071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23746100_23746500
ES_00015704	chr13	-	365	1	FSM	ENSMUSG00000060093.7	ENSMUST00000102964.4	539	1	69	105	69	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATTCCCTGAAAAAGCGC	NA	False	NA	NA	False	NA	NA	NA	23945144	23944779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23944800_23945100
ES_00015706	chr13	-	1019	2	Genic_Genomic	ENSMUSG00000080840.2	novel	1116	1	NA	NA	-13	0	multi-exon	TRUE	canonical	1	1	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATTAAATTCTCTTAA	NA	False	NA	NA	False	GATAAA	-34	NA	25767382	25766253	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_25766614_25766723
ES_00015708	chr13	-	5021	7	NIC	ENSMUSG00000016477.19	novel	5097	7	NA	NA	58	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	40.4790755274321	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTGGATGGATTTTCT	NA	False	NA	-3	True	AATAAA	-22	NA	30169988	30090557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102761_30104096_30104209_30169282
ES_00015709	chr13	-	1528	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	145.701464188479	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8620	False	NA	-7	True	AATAAA	-19	NA	34119818	34101909	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551
ES_00015710	chr13	-	1341	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	3	1	combination_of_known_junctions	FALSE	canonical	3	40	junction_6	142.613697331872	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGAACTGTCTGTCTGC	8610	False	NA	-6	True	AATAAA	-20	NA	34119828	34101908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
ES_00015713	chr13	-	786	4	FSM	ENSMUSG00000038267.16	ENSMUST00000145038.8	786	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	9.42809041582063	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATGGCTACCCAGCAATT	NA	False	NA	NA	False	NA	NA	NA	34528578	34388002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34388028_34405885_34406055_34482979_34483135_34528141
ES_00015714	chr13	-	801	1	FSM	ENSMUSG00000113843.2	ENSMUST00000220725.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTAAGTTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	34578507	34577706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34577700_34578500
ES_00015715	chr13	-	209	1	Intergenic	novelGene_1033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGCAATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	35127824	35127615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_35127600_35127800
ES_00015716	chr13	-	1430	10	FSM	ENSMUSG00000021417.16	ENSMUST00000178421.8	1414	10	0	-16	0	14	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGTTTCGGCAATAGA	NA	False	NA	NA	False	AATAAA	-31	NA	35178127	35161716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ES_00015719	chr13	-	4727	8	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	4	-4598	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	350.78308897409	174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTACAAACATGTGGCAGT	5850	False	NA	-14	True	ATTAAA	-41	NA	38178189	38159974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173564_38175972_38176086_38177980
ES_00015720	chr13	-	3325	3	FSM	ENSMUSG00000038991.18	ENSMUST00000160046.2	2781	3	-544	0	-544	0	multi-exon	FALSE	canonical	3	1041	junction_1	62.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAAAGTCTGGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	38690462	38684252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_38685685_38687406_38687537_38688699
ES_00015721	chr13	-	539	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	0	-6	0	6	multi-exon	FALSE	canonical	3	1400	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACAAGAGCATGGTTTG	NA	False	NA	NA	False	AATAAA	-26	NA	38842986	38839781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_38840217_38842882
ES_00015722	chr13	-	1753	9	NIC	ENSMUSG00000021432.16	novel	2216	10	NA	NA	0	-16	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	8.40293847412915	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTGTTATTGAAGAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	39144508	39116131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144407
ES_00015724	chr13	-	3423	7	FSM	ENSMUSG00000021359.17	ENSMUST00000021787.7	3487	7	14	50	14	-50	multi-exon	FALSE	canonical	2	4	junction_6	2.64575131106459	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCATTAACTTTATTATT	8774	False	NA	NA	False	NA	NA	NA	40883905	40868827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_40870880_40872667_40872810_40874744_40874864_40876566_40876799_40878604_40878657_40881817_40882253_40883514
ES_00015725	chr13	-	250	1	FSM	ENSMUSG00000114672.2	ENSMUST00000225988.2	692	1	-195	637	-195	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAGTTATAAAAAGAAGAA	8193	False	NA	NA	False	NA	NA	NA	41027860	41027610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_41027600_41027900
ES_00015726	chr13	-	2423	3	FSM	ENSMUSG00000021362.8	ENSMUST00000225420.2	2662	3	160	79	160	-78	multi-exon	FALSE	canonical	3	10	junction_1	1.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTTTCTATGCTGACA	NA	False	NA	NA	False	TTTAAA	-40	NA	41258999	41254981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_41257166_41258044_41258171_41258886
ES_00015727	chr13	-	3797	8	FSM	ENSMUSG00000021364.17	ENSMUST00000117096.2	3797	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	22.3533771360785	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATCTTGCAACTTTTC	7802	False	NA	NA	False	AATAAA	-15	NA	41373638	41335974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373512
ES_00015729	chr13	-	319	2	Antisense	novelGene_ENSMUSG00000038518.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTATTCATGCAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	44965908	44956114	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_44956318_44965792
ES_00015733	chr13	-	7072	39	NIC	ENSMUSG00000021375.12	novel	6866	38	NA	NA	49	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_28	14.9840404478914	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGATCGTCTGTTCTTTG	NA	False	NA	3	True	AATACA	-25	NA	47083294	46902561	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952810_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001863_47018294_47018308_47082691_47082783_47083042
ES_00015734	chr13	-	2705	16	NIC	ENSMUSG00000021375.12	novel	3917	16	NA	NA	-59	-9371	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	13.3159887186628	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTATGAAATGCCAGTT	NA	False	NA	-24	True	AATAAA	-17	NA	46944983	46913359	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809
ES_00015736	chr13	-	703	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	-32	1	-32	-1	multi-exon	FALSE	canonical	3	15	junction_1	5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCTTTGTATGTGTGAT	NA	False	NA	0	True	ATTAAA	-14	NA	48427392	48425889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_48426292_48426385_48426533_48427238
ES_00015737	chr13	-	4948	19	NNC	ENSMUSG00000038014.8	novel	5105	18	NA	NA	192	86624	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.6872179357449	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCAGATTTTACCTCAG	6575	False	NA	NA	False	NA	NA	NA	49121301	48946070	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_48946103_49032691_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
ES_00015742	chr13	-	515	3	Intergenic	novelGene_1055	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACCTTGGTGACTTATA	NA	False	NA	NA	False	AATAAA	-15	NA	54487240	54485570	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_54485816_54486436_54486594_54487127
ES_00015745	chr13	-	271	2	Intergenic	novelGene_1057	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATCTGCTGATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	54889030	54812768	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_54812849_54888839
ES_00015747	chr13	-	3796	11	FSM	ENSMUSG00000034928.17	ENSMUST00000150806.8	3772	11	0	-24	0	9	multi-exon	FALSE	canonical	3	111	junction_10	208.151603404826	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTCTCTGTGTTCTTT	NA	False	NA	4	True	AATAAA	-37	NA	54836001	54827202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831900_54832150_54832302_54835843
ES_00015748	chr13	-	1417	11	NNC	ENSMUSG00000034928.17	novel	3941	11	NA	NA	52	-122	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	218.40762349332	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGGCCCGGGGAGGACTG	NA	False	NA	NA	False	NA	NA	NA	54835014	54829499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54834935
ES_00015756	chr13	-	2224	13	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	37.5842571948534	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55234005	55176107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223272_55224114_55224221_55225215_55225341_55233422
ES_00015757	chr13	-	2780	14	NIC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	2	0	intron_retention	FALSE	canonical	3	94	junction_9	22.0505068438575	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248065	55176107	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ES_00015761	chr13	-	254	2	FSM	ENSMUSG00000034675.18	ENSMUST00000175813.2	732	2	500	-22	387	0	multi-exon	FALSE	canonical	3	61	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAGGTTAAAGGAGCAG	NA	False	NA	NA	False	NA	NA	NA	55629570	55629190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55629226_55629351
ES_00015764	chr13	-	870	7	NIC	ENSMUSG00000021493.16	novel	1006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	53.4716955241016	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661234	55654585	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_55654937_55655142_55655180_55655300_55655438_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ES_00015765	chr13	-	3216	11	NNC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	24	4	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	54.0397076231913	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATGGTGATTTGCTGA	NA	False	NA	0	True	GATAAA	-23	NA	55718889	55687124	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55697774_55697821_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55718587
ES_00015766	chr13	-	2930	9	FSM	ENSMUSG00000021495.11	ENSMUST00000225240.3	2950	9	24	-4	24	4	multi-exon	FALSE	canonical	3	10	junction_4	57.7644732945779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATGGTGATTTGCTGA	NA	False	NA	0	True	GATAAA	-23	NA	55718889	55687124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55718587
ES_00015767	chr13	-	1939	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	847	junction_5	145.981109651215	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	6006	False	NA	-8	True	AGTAAA	-15	NA	56283343	56221434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00015769	chr13	-	2656	3	FSM	ENSMUSG00000049625.7	ENSMUST00000225063.2	2718	3	62	0	-22	0	multi-exon	FALSE	canonical	1	1	junction_2	2.5	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCGTGCCATCAGCTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	56326636	56322295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_56324447_56324717_56324946_56326359
ES_00015770	chr13	-	1714	5	NNC	ENSMUSG00000021508.12	novel	1827	4	NA	NA	-103	42946	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.7367857786074	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGACGAGAGGGAAGGA	NA	False	NA	NA	False	NA	NA	NA	56444221	56393509	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_56393546_56436461_56437621_56440273_56440388_56443638_56443745_56443922
ES_00015771	chr13	-	3623	11	NNC	ENSMUSG00000005312.16	novel	3561	10	NA	NA	0	45520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	478.506227754666	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAACAAACTGACTGC	1761	False	NA	NA	False	NA	NA	NA	58363433	58278449	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_58278511_58323975_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ES_00015773	chr13	-	3679	12	NNC	ENSMUSG00000005312.16	novel	3686	11	NA	NA	0	12941	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	429.090446841045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGTTTCAATCGTAGGT	1761	False	NA	NA	False	NA	NA	NA	58363433	58311028	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_58311054_58323967_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ES_00015775	chr13	-	1578	11	NIC	ENSMUSG00000021552.8	novel	1523	12	NA	NA	-160	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	57.4174189597547	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTGATCTTCACT	NA	False	NA	-1	True	AATAAA	-19	NA	58422162	58381162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
ES_00015776	chr13	-	200	1	Intergenic	novelGene_1073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGAAAAATATATTAAGCA	NA	False	NA	NA	False	NA	NA	NA	58493930	58493730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_58493700_58493900
ES_00015780	chr13	-	241	1	ISM	ENSMUSG00000021553.15	ENSMUST00000022036.14	4567	18	56984	348	4374	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	638	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCCTGATTAAGACTGTAA	NA	False	NA	NA	False	NA	NA	NA	58701707	58701466	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_58701500_58701700
ES_00015781	chr13	-	2245	9	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	3307	146	intron_retention	FALSE	canonical	2	7	junction_8	8.08451451851006	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCTCAGCTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	59625845	59597204	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59625604
ES_00015784	chr13	-	3280	1	FSM	ENSMUSG00000044792.8	ENSMUST00000225795.2	3280	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTAGTGGTTCCTTTTCTT	NA	False	NA	-2	True	ATTAAA	-18	NA	59906507	59903227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59903200_59906500
ES_00015786	chr13	-	4677	29	NIC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	18	-133	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	38.2965070075535	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTCAGGTGTCCGTGGC	NA	False	NA	NA	False	NA	NA	NA	59970910	59920580	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_59920674_59926565_59926630_59926950_59927016_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970894
ES_00015787	chr13	-	517	1	FSM	ENSMUSG00000114835.2	ENSMUST00000226102.2	517	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTCAACTTCTAAGACT	NA	False	NA	NA	False	ATTAAA	-19	NA	59929392	59928875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59928900_59929400
ES_00015789	chr13	-	544	2	Antisense	novelGene_ENSMUSG00000074868.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	283	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCAGTATGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62199800	61893925	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_61894291_62199621
ES_00015790	chr13	-	205	2	Intergenic	novelGene_1086	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	471	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCATTTGGAGTTAATTT	NA	False	NA	NA	False	NA	NA	NA	62547783	62524408	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_62524556_62547725
ES_00015791	chr13	-	773	1	FSM	ENSMUSG00000113865.2	ENSMUST00000221812.2	283	1	0	-490	0	490	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATACAGATTGCATTTCA	NA	False	NA	NA	False	AATAAA	-37	NA	62535747	62534974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62535000_62535700
ES_00015793	chr13	-	2492	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	11.5566238822398	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAAGAGGTG	9512	False	NA	NA	False	NA	NA	NA	62614646	62600829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
ES_00015794	chr13	-	1631	3	FSM	ENSMUSG00000055228.9	ENSMUST00000076195.7	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	28.5	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTTTACAACACCATCA	NA	False	NA	NA	False	NA	NA	NA	62706325	62601528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62603008_62604746_62604874_62706300
ES_00015795	chr13	-	2166	4	NNC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	7171	0	intron_retention	FALSE	canonical	3	7	junction_3	29.0095769627128	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62699154	62664608	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62699112
ES_00015797	chr13	-	602	4	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9942	-1224	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	33.8755893757667	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAACGTAGTCTCCAAAC	NA	False	NA	-3	True	NA	NA	NA	62801008	62788923	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62789246_62790689_62790751_62790936_62791064_62800916
ES_00015799	chr13	-	2557	5	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-4	427	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	123.408620039283	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATCTTAATGTCAGAAAA	6804	False	NA	40	True	NA	NA	NA	62860571	62846792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62848493_62848576_62849125_62853513_62853576_62853943_62854071_62860451
ES_00015800	chr13	-	2613	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-4	427	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATCTTAATGTCAGAAAA	6804	False	NA	40	True	NA	NA	NA	62860571	62846792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62848493_62848576_62849125_62853513_62853576_62853943_62854071_62855967_62856024_62860451
ES_00015802	chr13	-	1386	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	91	2	-64	-2	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTTCTTTAGTGCGTT	NA	False	NA	NA	False	AATAAA	-21	NA	63036005	63012568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
ES_00015804	chr13	-	2959	15	NIC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-5	-1	intron_retention	FALSE	canonical	2	5	junction_14	30.5478046240141	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATTCAGACCTTCCTAC	NA	False	NA	-8	True	AATAAA	-16	NA	63579564	63459569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550892_63579263
ES_00015808	chr13	-	327	1	FSM	ENSMUSG00000113340.2	ENSMUST00000220900.2	641	1	30	284	30	-284	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCGGGCCCAGGCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64094305	64093978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64094000_64094300
ES_00015809	chr13	-	676	4	FSM	ENSMUSG00000033122.15	ENSMUST00000221513.2	655	4	0	-21	0	3	multi-exon	FALSE	canonical	1	1	junction_1	1.63299316185545	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGCCTCAGAACATTA	NA	False	NA	NA	False	AATAAA	-17	NA	64210947	64206076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64206494_64207232_64207380_64210693_64210760_64210901
ES_00015810	chr13	-	2210	11	NIC	ENSMUSG00000033114.12	novel	2303	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	31.255239560752	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	-1	True	NA	NA	NA	64277144	64244121	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64268408_64268496_64270132_64270167_64276999
ES_00015811	chr13	-	1149	8	NIC	ENSMUSG00000033114.12	novel	917	11	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	48.3727027087276	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCGCACAGTGTGATATT	NA	False	NA	NA	False	AATAAA	-14	NA	64277125	64244959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_64245499_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64276999
ES_00015813	chr13	-	562	5	FSM	ENSMUSG00000044934.14	ENSMUST00000134136.2	562	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	22.9932055181525	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATGAGAGAGCAACGCAC	9038	False	NA	NA	False	TATAAA	-31	NA	64298028	64283343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64297883
ES_00015815	chr13	-	6577	16	Fusion	ENSMUSG00000033102.16_ENSMUSG00000021482.11	novel	3075	15	NA	NA	-318	0	multi-exon	FALSE	canonical	1	3	junction_15	25.5041608805744	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGTTGTATTCAC	9056	False	NA	NA	False	ATTAAA	-15	NA	64423422	64340358	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_64344490_64344793_64344860_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218_64396281_64422404
ES_00015816	chr13	-	2615	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	15	-384	combination_of_known_junctions	FALSE	canonical	3	31	junction_13	15.7570309280854	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGCCTTGAATCCCAGCAT	9691	False	NA	NA	False	NA	NA	NA	64422787	64343557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64422404
ES_00015818	chr13	-	667	1	FSM	ENSMUSG00000033102.16	ENSMUST00000221788.2	2565	1	-54	1952	-54	-759	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTTTGTCTTTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	64345792	64345125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64345100_64345800
ES_00015822	chr13	-	364	1	Intergenic	novelGene_1094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	64541844	64541480	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_64541500_64541800
ES_00015825	chr13	-	234	3	Intergenic	novelGene_1099	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_2	6	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCTATGAATGTAATCA	9277	False	NA	NA	False	NA	NA	NA	65548422	65546812	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65546838_65548013_65548075_65548274
ES_00015826	chr13	-	7115	3	Genic_Genomic	ENSMUSG00000114031.2	novel	908	1	NA	NA	-5564	2616	multi-exon	FALSE	canonical	3	21	junction_2	101.5	341	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGGTTTCTCTGGAGTTA	NA	False	NA	-1	True	NA	NA	NA	65632670	65623582	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_65628768_65628968_65630754_65632525
ES_00015827	chr13	-	5423	3	Genic_Genomic	ENSMUSG00000114031.2	novel	908	1	NA	NA	-5567	2620	multi-exon	FALSE	canonical	3	95	junction_2	64.5	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTCTGGAGTTATTGG	NA	False	NA	3	True	NA	NA	NA	65632673	65623578	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_65628768_65628968_65629055_65632525
ES_00015828	chr13	-	486	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6972	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGACTAGCATGCCTTC	NA	False	NA	NA	False	NA	NA	NA	65651579	65639612	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65639775_65644415_65644605_65651444
ES_00015830	chr13	-	2131	4	Antisense	novelGene_ENSMUSG00000063905.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	5	junction_1	30.6847772609735	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACATTCATGAGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	65662960	65659840	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_65659866_65660369_65660415_65660834_65661132_65661196
ES_00015831	chr13	-	662	4	Intergenic	novelGene_1103	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	27.7408643620842	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTCCATTATATCAAA	NA	False	NA	NA	False	NA	NA	NA	65705500	65675064	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65675444_65697380_65697442_65697641_65697769_65705405
ES_00015833	chr13	-	371	4	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-6182	29394	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	19.1369334592098	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGGACCATAAAGAGCAT	1648	False	NA	NA	False	NA	NA	NA	65846992	65808032	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65808114_65840427_65840489_65840688_65840816_65846890
ES_00015834	chr13	-	428	4	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-6240	997	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_3	36.9143151997523	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTCATAAAAGAACCCAT	1590	False	NA	NA	False	NA	NA	NA	65847050	65839163	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65839244_65840427_65840489_65840688_65840816_65846890
ES_00015835	chr13	-	1193	6	Intergenic	novelGene_1110	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	32.2527518205811	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAAGGAGAAATGAAAGC	NA	False	NA	NA	False	NA	NA	NA	65960872	65894503	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65894575_65895411_65896095_65896542_65896686_65954300_65954362_65954561_65954689_65960764
ES_00015838	chr13	-	2639	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-44643	-122	intron_retention	FALSE	canonical	3	12	junction_2	78	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACCTTATGAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	66175248	66124278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66126651_66126851_66126979_66175108
ES_00015839	chr13	-	1665	6	Genic_Genomic	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7351	13934	multi-exon	FALSE	canonical	3	6	junction_3	23.1309316716815	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATAAAGTTTCTTCCT	1843	False	NA	NA	False	AATAAA	-26	NA	66439316	66415015	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_66415525_66416652_66417335_66417784_66417928_66431569_66431631_66431830_66431958_66439173
ES_00015841	chr13	-	598	5	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-43	22871	multi-exon	FALSE	canonical	1	1	junction_1	77.2075125878305	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTTTATTATATGGGT	NA	False	NA	NA	False	NA	NA	NA	66589222	66476106	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_66476232_66519399_66519543_66581478_66581540_66581739_66581867_66589080
ES_00015842	chr13	-	2350	1	FSM	ENSMUSG00000114729.2	ENSMUST00000224620.2	2350	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGAAACCTTATGAATGTA	NA	False	NA	NA	False	NA	NA	NA	66490994	66488644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66488600_66491000
ES_00015848	chr13	-	3734	3	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3608	869	intron_retention	FALSE	canonical	3	46	junction_2	78	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAAAACTAC	NA	False	NA	NA	False	NA	NA	NA	66892985	66885565	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66889043_66889243_66889330_66892814
ES_00015859	chr13	-	13233	4	FSM	ENSMUSG00000048280.19	ENSMUST00000137496.10	13215	4	0	-18	0	18	multi-exon	TRUE	canonical	3	10	junction_1	3.68178700572909	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCCATTTTCCTCCTAAG	NA	False	NA	NA	False	ATTAAA	-11	NA	67831586	67806785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67819731_67821116_67821213_67821680_67821808_67831521
ES_00015860	chr13	-	2040	14	NIC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	0	-915	combination_of_known_junctions	FALSE	canonical	3	56	junction_12	89.8987596257508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGCTTGGAATTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	68730240	68710396	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68728669_68728835_68730183
ES_00015861	chr13	-	664	3	FSM	ENSMUSG00000034617.8	ENSMUST00000223055.2	664	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	201	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGTTGCATAGGCCT	NA	False	NA	NA	False	AATATA	-16	NA	68730013	68727590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_68727816_68728669_68728835_68729739
ES_00015862	chr13	-	1439	3	NNC	ENSMUSG00000113346.3	novel	1306	3	NA	NA	5	133	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	18.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTTGGATCTAATGCTA	NA	False	NA	NA	False	NA	NA	NA	73495498	73492650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_73493358_73494614_73495181_73495332
ES_00015863	chr13	-	1469	7	FSM	ENSMUSG00000021569.11	ENSMUST00000222156.2	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	185.430729803761	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	-20	True	ATTAAA	-14	NA	74069333	74060576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068568_74069291
ES_00015864	chr13	-	3774	11	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	16	-128	intron_retention	FALSE	canonical	3	39	junction_4	26.9386339668514	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTAAGTGGCTCTTCAT	NA	False	NA	NA	False	AATATA	-22	NA	74210402	74185951	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ES_00015865	chr13	-	435	2	FSM	ENSMUSG00000034152.7	ENSMUST00000220548.2	461	2	0	26	0	-26	multi-exon	FALSE	canonical	3	174	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTGTGTACATATACA	7150	False	NA	NA	False	NA	NA	NA	74356851	74354856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74355217_74356776
ES_00015866	chr13	-	2854	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	489.096313706853	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTCAAGGTGTTCTAT	NA	False	NA	-6	True	NA	NA	NA	74498354	74470370	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476532_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
ES_00015869	chr13	-	351	2	Intergenic	novelGene_1140	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCACATTGATTACATT	5847	False	NA	NA	False	NA	NA	NA	74558005	74557486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_74557545_74557712
ES_00015871	chr13	-	2467	1	Genic_Genomic	ENSMUSG00000112964.2	novel	NA	NA	NA	NA	-362	5382	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAACATAGTAGTGCACGT	NA	False	NA	NA	False	NA	NA	NA	74592475	74590008	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_74590000_74592500
ES_00015872	chr13	-	563	3	FSM	ENSMUSG00000112964.2	ENSMUST00000221334.2	1440	3	2	875	0	109	multi-exon	FALSE	canonical	2	12	junction_2	14	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTTTGCACATCACAATA	6495	False	NA	NA	False	NA	NA	NA	74610812	74596288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74596679_74598074_74598136_74610700
ES_00015874	chr13	-	1428	3	FSM	ENSMUSG00000113047.2	ENSMUST00000221408.2	1428	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	12.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTCATAAAAGAACACATA	NA	False	NA	NA	False	NA	NA	NA	74705067	74702028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74702530_74703925_74703987_74704201
ES_00015877	chr13	-	523	5	ISM	ENSMUSG00000113204.2	ENSMUST00000221389.2	1049	11	26502	-67	18655	67	3prime_fragment	FALSE	canonical	1	1	junction_4	32.4143101114307	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAAAGAACACATGCTGG	NA	False	NA	NA	False	NA	NA	NA	74739498	74727409	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730368_74739390
ES_00015878	chr13	-	838	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18633	67	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	27.2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAAAGAACACATGCTGG	NA	False	NA	NA	False	NA	NA	NA	74739520	74727409	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74731765_74731993_74739390
ES_00015879	chr13	-	455	4	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18268	67	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	36.2338086445365	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAAAGAACACATGCTGG	NA	False	NA	NA	False	NA	NA	NA	74739885	74727409	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74739787
ES_00015880	chr13	-	1288	4	FSM	ENSMUSG00000113204.2	ENSMUST00000221506.2	1288	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	33.95094500403	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATACTGGAGAGAAACCT	4826	False	NA	NA	False	NA	NA	NA	74765821	74755255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74765320
ES_00015881	chr13	-	5143	32	FSM	ENSMUSG00000021585.11	ENSMUST00000223206.2	5141	32	0	-2	0	2	multi-exon	TRUE	canonical	3	49	junction_27	33.4677691410694	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGCTATGTGTTTTA	NA	False	NA	NA	False	ATTAAA	-20	NA	74956929	74840484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
ES_00015882	chr13	-	3798	32	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	76	3	combination_of_known_junctions	FALSE	canonical	3	15	junction_31	37.1226557681413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCCTGAACTCTACTTT	NA	False	NA	NA	False	NA	NA	NA	74956853	74842370	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74955937
ES_00015883	chr13	-	1197	5	FSM	ENSMUSG00000021592.19	ENSMUST00000224884.2	2731	5	0	1534	0	226	multi-exon	FALSE	canonical	3	21	junction_2	2.77263412660235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATTTTAATCATTCGT	9776	False	NA	NA	False	AATAAA	-7	NA	76246779	76220047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_76220391_76222893_76223171_76239776_76239937_76242006_76242137_76246492
ES_00015884	chr13	-	539	3	FSM	ENSMUSG00000021592.19	ENSMUST00000223579.3	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	8.5	2963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTAACTACACCAAGCCA	9833	False	NA	NA	False	AATACA	-26	NA	76246722	76223021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_76223171_76239776_76239937_76246492
ES_00015886	chr13	-	1949	3	FSM	ENSMUSG00000021597.17	ENSMUST00000162005.2	531	3	-286	-1132	-286	249	multi-exon	FALSE	canonical	3	146	junction_1	6.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTCCCCCACCCACCCAC	NA	False	NA	NA	False	NA	NA	NA	77195802	77190957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_77192150_77194640_77194824_77195228
ES_00015887	chr13	-	3541	13	ISM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	33740	-249	29543	249	3prime_fragment	FALSE	canonical	3	84	junction_3	21.2439533880951	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTCCCCCACCCACCCAC	NA	False	NA	NA	False	NA	NA	NA	77249852	77190957	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040
ES_00015888	chr13	-	3424	19	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_13	34.6410161513775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283557	77191206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00015891	chr13	-	587	2	FSM	ENSMUSG00000035834.12	ENSMUST00000160331.2	658	2	0	71	0	-71	multi-exon	FALSE	canonical	3	281	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTGTCTTCTACTGAT	NA	False	NA	NA	False	NA	NA	NA	81859121	81847570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_81848013_81858976
ES_00015892	chr13	-	638	1	FSM	ENSMUSG00000114827.2	ENSMUST00000225916.2	638	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTGGTTCTAGCACAGT	NA	False	NA	NA	False	NA	NA	NA	84429935	84429297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_84429300_84429900
ES_00015893	chr13	-	718	1	FSM	ENSMUSG00000094463.3	ENSMUST00000178288.3	1264	1	-44	590	-44	-590	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTGGTCCACTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	89726582	89725864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_89725900_89726600
ES_00015894	chr13	-	12429	15	FSM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	0	-2	0	2	multi-exon	TRUE	canonical	2	4	junction_8	18.7382616317414	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTTGTCTGTTTATT	2606	False	NA	1	True	AAGAAA	-25	NA	89890628	89803428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89851036_89853917_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ES_00015895	chr13	-	2321	13	FSM	ENSMUSG00000021614.17	ENSMUST00000109543.9	2321	13	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	15.55813470682	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCGAATAAAATGAAAG	2871	False	NA	-42	True	AATGAA	-15	NA	89890363	89805174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ES_00015899	chr13	-	3942	24	FSM	ENSMUSG00000014850.16	ENSMUST00000185852.7	3946	24	0	4	0	4	multi-exon	FALSE	canonical	0	0	junction_18	25.3850498550558	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATGGCGTATTGTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	92491503	92348383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
ES_00015900	chr13	-	3877	24	NNC	ENSMUSG00000014850.16	novel	3937	24	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	non_canonical	3	18	junction_5	22.6177239498798	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGCATGGCGTATTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	92491444	92348386	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372237_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481608_92483238_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
ES_00015902	chr13	-	1407	9	NNC	ENSMUSG00000014850.16	novel	1753	9	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	1	1	junction_1	34.2269539252327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCCTAAGTGTAAGAACA	NA	False	NA	NA	False	AATAAA	-20	NA	92491449	92477181	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_92477334_92478753_92478921_92481463_92481608_92483238_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
ES_00015903	chr13	-	247	2	Intergenic	novelGene_1163	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCTTGTCTTTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	92645046	92546268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_92546491_92645021
ES_00015908	chr13	-	354	4	Antisense	novelGene_ENSMUSG00000078952.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	10.2089285540757	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGGAGAAAGACACAAGCAT	NA	False	NA	NA	False	GGGGCT	-15	NA	97619126	97597813	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_97597839_97618046_97618132_97618599_97618764_97619046
ES_00015912	chr13	-	350	1	FSM	ENSMUSG00000045022.7	ENSMUST00000054425.7	481	1	-27	158	-27	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCAGCAGGCAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	99121100	99120750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_99120800_99121100
ES_00015914	chr13	-	2965	1	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	92130	0	19534	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTCCTTGTCATTTG	NA	False	NA	0	True	AATAAA	-40	NA	99560918	99557953	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_99558000_99560900
ES_00015917	chr13	-	2732	18	NNC	ENSMUSG00000021635.15	novel	2392	17	NA	NA	0	104112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.1161971621259	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCTGAGCTAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	100787555	100649559	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100649585_100753671_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ES_00015918	chr13	-	3060	7	FSM	ENSMUSG00000021636.16	ENSMUST00000022137.14	3061	7	0	1	0	-1	multi-exon	FALSE	canonical	1	3	junction_4	4.71404520791032	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGTGTGCTCCTTAT	NA	False	NA	-2	True	ATTAAA	-17	NA	100753479	100732465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753433
ES_00015920	chr13	-	1849	12	NNC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	8	-119	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_8	212.492916751174	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATACTATTGCTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	100867429	100839257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857095_100857162_100859187_100859222_100866965_100867026_100867281
ES_00015922	chr13	-	805	5	NNC	ENSMUSG00000061474.12	novel	571	4	NA	NA	-417	-1	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_2	507.956875630205	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGTGAGCAGAATGAAG	NA	False	NA	NA	False	AATAAA	-2	NA	100881584	100872660	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037_100881130_100881238
ES_00015923	chr13	-	2140	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100922994	100915239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
ES_00015924	chr13	-	1182	8	FSM	ENSMUSG00000041431.17	ENSMUST00000174038.2	1182	8	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_1	1234.39734944892	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAATAGACTGCTACATC	NA	False	NA	-119	True	NA	NA	NA	100922910	100916185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100916294_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ES_00015925	chr13	-	4000	1	FSM	ENSMUSG00000021629.11	ENSMUST00000224177.2	4000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1957	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTAAAAAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	100961057	100957057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100957100_100961100
ES_00015928	chr13	-	2169	1	FSM	ENSMUSG00000104214.2	ENSMUST00000192073.2	2169	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAACAGTTCAATATT	NA	False	NA	NA	False	AATAAA	-11	NA	101888396	101886227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_101886200_101888400
ES_00015930	chr13	-	1655	9	FSM	ENSMUSG00000032621.9	ENSMUST00000211322.2	1655	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	75.5619571940802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAGAAAAGGAGAAGGA	9982	False	NA	-78	True	GATAAA	-37	NA	103910601	103889050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910075
ES_00015931	chr13	-	6286	25	NIC	ENSMUSG00000021709.15	novel	6224	26	NA	NA	40	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	17.3060181407766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTCTTGGTGTTGCCT	NA	False	NA	-5	True	NA	NA	NA	104056982	103955298	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
ES_00015933	chr13	-	388	1	FSM	ENSMUSG00000021710.12	ENSMUST00000225478.2	2720	1	1546	786	1546	-786	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTAGACTAAAAGAAGAAG	138	False	NA	NA	False	NA	NA	NA	104205205	104204817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104204800_104205200
ES_00015934	chr13	-	3509	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	0	-7	0	0	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTGAGTCAACTATTAT	NA	False	NA	NA	False	AATAAA	-25	NA	104314933	104278656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ES_00015938	chr13	-	540	6	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	-22702	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	250.662003502725	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTATGTCTGCATAACTTA	NA	False	NA	NA	False	NA	NA	NA	108295018	108161950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_108161986_108189124_108189189_108189220_108189489_108217886_108217928_108228067_108228158_108294976
ES_00015939	chr13	-	1125	1	FSM	ENSMUSG00000114607.2	ENSMUST00000225465.2	1549	1	776	-352	776	352	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCCATGACTTTCCAGG	NA	False	NA	NA	False	AAGAAA	-31	NA	108446508	108445383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_108445400_108446500
ES_00015945	chr13	-	1113	6	FSM	ENSMUSG00000021765.10	ENSMUST00000231252.2	1113	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	7.29383301152419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAAAGAAAAAAGATAGAA	NA	False	NA	NA	False	NA	NA	NA	114595122	114589877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_114590042_114590815_114591044_114591656_114591882_114592219_114592439_114592898_114593091_114595037
ES_00015948	chr13	-	3489	16	NIC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	-250	-79	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	56.4381273805415	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCTTCGTCTCTGATGA	NA	False	NA	NA	False	AATAAA	-18	NA	119545783	119472062	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ES_00015950	chr13	-	1889	4	NNC	ENSMUSG00000025453.19	novel	1885	4	NA	NA	-437	4	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	91.4561218411442	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCGTTGAGACTTTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	119545970	119530003	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_119531365_119533282_119533513_119541087_119541291_119545875
ES_00015956	chr13	+	399	1	Intergenic	novelGene_996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	378	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTAGATGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	3283424	3283823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_3283400_3283800
ES_00015957	chr13	+	376	1	Intergenic	novelGene_997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAATAGAAGGGTCCAGATC	NA	False	NA	NA	False	NA	NA	NA	3284485	3284861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_3284500_3284900
ES_00015958	chr13	+	937	1	Intergenic	novelGene_999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGCTCTACCTCGCCT	1326	False	NA	NA	False	NA	NA	NA	3558320	3559257	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_3558300_3559300
ES_00015959	chr13	+	222	1	Intergenic	novelGene_1003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGATAAGACCCACACCTG	8023	False	NA	NA	False	NA	NA	NA	8946010	8946232	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_8946000_8946200
ES_00015960	chr13	+	218	1	Intergenic	novelGene_1005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTTTTTCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	9403405	9403623	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_9403400_9403600
ES_00015961	chr13	+	299	1	Intergenic	novelGene_1007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCTTGATACATCTTC	NA	False	NA	NA	False	NA	NA	NA	11552787	11553086	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_11552800_11553100
ES_00015962	chr13	+	806	1	Intergenic	novelGene_1018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACATATTTTTAATATTT	NA	False	NA	NA	False	NA	NA	NA	23004026	23004832	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_23004000_23004800
ES_00015966	chr13	+	5970	1	Intergenic	novelGene_1025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACAGATAGTCAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	31852482	31858452	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_31852500_31858500
ES_00015967	chr13	+	1603	1	Intergenic	novelGene_1029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCAGAGATTATTTGGC	NA	False	NA	NA	False	NA	NA	NA	33244935	33246538	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_33244900_33246500
ES_00015968	chr13	+	265	1	Intergenic	novelGene_1031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACAGAAAAAGGTAGTAAG	6071	False	NA	NA	False	AAGAAA	-8	NA	34096781	34097046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_34096800_34097000
ES_00015971	chr13	+	200	1	Intergenic	novelGene_1040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCAGGTTCTTAGGTCA	1588	False	NA	NA	False	NA	NA	NA	44768209	44768409	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_44768200_44768400
ES_00015972	chr13	+	206	1	Intergenic	novelGene_1041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATCAGATCACTGTGCC	7764	False	NA	NA	False	NA	NA	NA	44774385	44774591	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_44774400_44774600
ES_00015973	chr13	+	235	1	Intergenic	novelGene_1046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATTCTTGACTCTTAGC	NA	False	NA	NA	False	NA	NA	NA	45173864	45174099	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_45173900_45174100
ES_00015974	chr13	+	205	1	Intergenic	novelGene_1047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACACACTGGGATGGGGA	NA	False	NA	NA	False	AAAAAG	-3	NA	49158776	49158981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_49158800_49159000
ES_00015975	chr13	+	217	1	Intergenic	novelGene_1048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGATCAGCAGTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	49599131	49599348	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_49599100_49599300
ES_00015977	chr13	+	571	1	Intergenic	novelGene_1051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCCTCAGTGTCAATG	NA	False	NA	NA	False	AGTAAA	-41	NA	51358243	51358814	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_51358200_51358800
ES_00015979	chr13	+	202	1	Intergenic	novelGene_1059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCTCGGAAAACCAAAATA	2859	False	NA	NA	False	NA	NA	NA	55293129	55293331	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55293100_55293300
ES_00015980	chr13	+	369	1	Intergenic	novelGene_1063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTAAACCAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	55538027	55538396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55538000_55538400
ES_00015981	chr13	+	201	1	Intergenic	novelGene_1067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCCTCTTAAGGCTTT	7587	False	NA	NA	False	NA	NA	NA	55734950	55735151	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55735000_55735200
ES_00015982	chr13	+	207	1	Intergenic	novelGene_1070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCACTTTTCCTGATGT	2540	False	NA	NA	False	NA	NA	NA	56508443	56508650	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_56508400_56508600
ES_00015983	chr13	+	244	1	Intergenic	novelGene_1075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATTTATTTCCGAATTA	4880	False	NA	NA	False	NA	NA	NA	59717163	59717407	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_59717200_59717400
ES_00015984	chr13	+	520	1	Intergenic	novelGene_1076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTAGGGACGAGGAGCATG	NA	False	NA	NA	False	NA	NA	NA	61679818	61680338	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_61679800_61680300
ES_00015986	chr13	+	213	1	Intergenic	novelGene_1083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCGTATCACAGTTATCT	NA	False	NA	NA	False	NA	NA	NA	62199092	62199305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62199100_62199300
ES_00015987	chr13	+	276	1	Intergenic	novelGene_1084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTATTTGCCAGCCAG	NA	False	NA	NA	False	NA	NA	NA	62199866	62200142	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62199900_62200100
ES_00015988	chr13	+	239	1	Intergenic	novelGene_1087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTTAACTTTAAATCT	NA	False	NA	NA	False	NA	NA	NA	62647223	62647462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62647200_62647500
ES_00015990	chr13	+	210	1	Intergenic	novelGene_1089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGCCTCTAACAGAATTC	NA	False	NA	NA	False	NA	NA	NA	62702731	62702941	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62702700_62702900
ES_00015992	chr13	+	480	1	Intergenic	novelGene_1102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	493	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGAGCCATCTCACCAGC	NA	False	NA	NA	False	NA	NA	NA	65669185	65669665	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65669200_65669700
ES_00015993	chr13	+	623	1	Intergenic	novelGene_1107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAAGTTTGCTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	65802241	65802864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65802200_65802900
ES_00015995	chr13	+	1257	1	Intergenic	novelGene_1127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCTATCTACAGTTCT	2535	False	NA	NA	False	NA	NA	NA	66522186	66523443	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66522200_66523400
ES_00015999	chr13	+	204	1	Intergenic	novelGene_1138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGTGGTGGCACACTTCG	NA	False	NA	NA	False	NA	NA	NA	68304550	68304754	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_68304600_68304800
ES_00016000	chr13	+	411	1	Intergenic	novelGene_1141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACCATAGAACTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	74564762	74565173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_74564800_74565200
ES_00016001	chr13	+	210	1	Intergenic	novelGene_1143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCTTCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74942938	74943148	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_74942900_74943100
ES_00016003	chr13	+	826	1	Intergenic	novelGene_1156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGATTAAAAGGTATTT	NA	False	NA	NA	False	NA	NA	NA	90435000	90435826	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_90435000_90435800
ES_00016004	chr13	+	308	1	Intergenic	novelGene_1157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAGAAAAACGTTATTG	NA	False	NA	NA	False	NA	NA	NA	90436052	90436360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_90436100_90436400
ES_00016005	chr13	+	262	1	Intergenic	novelGene_1158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGAAGTCTTACCTTT	NA	False	NA	NA	False	NA	NA	NA	90436638	90436900	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_90436600_90436900
ES_00016006	chr13	+	306	1	Intergenic	novelGene_1159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGTTAATTCAGAACAC	NA	False	NA	NA	False	NA	NA	NA	90437081	90437387	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_90437100_90437400
ES_00016007	chr13	+	228	1	Intergenic	novelGene_1161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTTCCCATCTTACACC	NA	False	NA	NA	False	NA	NA	NA	92005409	92005637	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_92005400_92005600
ES_00016008	chr13	+	202	1	Intergenic	novelGene_1166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	93766575	93766777	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_93766600_93766800
ES_00016009	chr13	+	202	1	Intergenic	novelGene_1167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	94788277	94788479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_94788300_94788500
ES_00016010	chr13	+	213	1	Intergenic	novelGene_1170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTCTGAATAAACACC	NA	False	NA	NA	False	NA	NA	NA	97326990	97327203	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_97327000_97327200
ES_00016011	chr13	+	210	1	Intergenic	novelGene_1182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCAGTTTCGCTTTA	NA	False	NA	NA	False	NA	NA	NA	104567539	104567749	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_104567500_104567700
ES_00016012	chr13	+	200	1	Intergenic	novelGene_1183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACATTGCCCATTGATT	NA	False	NA	NA	False	NA	NA	NA	107173480	107173680	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_107173500_107173700
ES_00016020	chr13	+	622	4	FSM	ENSMUSG00000097709.9	ENSMUST00000221008.2	2568	4	-46	1992	-9	0	multi-exon	FALSE	canonical	2	6	junction_1	6.18241233033047	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528220	3542406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3542181
ES_00016023	chr13	+	1205	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	62	-5	28	5	multi-exon	FALSE	canonical	1	2	junction_3	2.98956518577535	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTTCTTTGTTTTTTGT	7419	False	NA	NA	False	AATAAA	-22	NA	4241210	4255600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
ES_00016025	chr13	+	1039	1	FSM	ENSMUSG00000113412.2	ENSMUST00000222882.2	1236	1	296	-99	296	99	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGCATGATATAAGGACT	NA	False	NA	NA	False	NA	NA	NA	8178464	8179503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_8178500_8179500
ES_00016027	chr13	+	13134	53	FSM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	47	0	35	0	multi-exon	TRUE	canonical	1	1	junction_5	4.58398776034385	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTATAAATGACTTGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	13765028	13953388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_13765082_13788426_13788513_13791131_13791331_13805593_13805685_13808614_13810695_13811952_13812962_13814618_13814781_13815651_13815809_13818022_13818250_13818649_13818717_13821612_13821723_13823124_13823552_13824908_13825054_13826161_13826336_13831418_13831580_13833181_13833373_13835512_13835759_13838524_13838699_13844424_13844575_13845387_13845526_13847840_13848040_13848914_13849047_13852233_13852850_13853547_13853726_13854657_13854828_13855876_13856108_13857639_13857807_13858542_13858687_13862203_13862396_13871194_13871374_13872911_13873119_13881086_13881264_13882203_13882281_13882606_13882796_13883872_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ES_00016030	chr13	+	3017	20	NIC	ENSMUSG00000021314.14	novel	3760	21	NA	NA	25	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_16	14.1794982896135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTACATGGGTTCTTTT	NA	False	NA	10	True	AATAAA	-15	NA	19132592	19335082	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ES_00016031	chr13	+	704	7	FSM	ENSMUSG00000041112.18	ENSMUST00000181429.8	3113	7	-6	2415	-6	-2415	multi-exon	FALSE	canonical	3	23	junction_6	5.28362249471579	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGATATATCTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	20274759	20445762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726
ES_00016032	chr13	+	3813	22	NNC	ENSMUSG00000041112.18	novel	1087	9	NA	NA	-524	-1827	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	10.744402117882	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGAGCTGGTGTTTTGA	NA	False	NA	6	True	AATAAA	-16	NA	20368852	20790696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_20369182_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ES_00016033	chr13	+	281	1	Genic_Genomic	ENSMUSG00000060404.4	novel	NA	NA	NA	NA	3253	132	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCCCCAATCTTTTCC	7596	False	NA	NA	False	NA	NA	NA	21303116	21303397	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_21303100_21303400
ES_00016034	chr13	+	596	4	Antisense	novelGene_ENSMUSG00000081191.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	121.150961843295	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGGTATAGCACTCTTC	NA	False	NA	NA	False	AATACA	-25	NA	21466572	21566150	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_21466588_21545338_21545361_21565558_21565636_21565668
ES_00016036	chr13	+	469	1	FSM	ENSMUSG00000069308.8	ENSMUST00000102982.2	469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTACCTTACTCGGAC	NA	False	NA	NA	False	AAAACA	-21	NA	21971677	21972146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_21971700_21972100
ES_00016039	chr13	+	1382	2	Genic_Genomic	ENSMUSG00000061991.3_ENSMUSG00000099517.3	novel	530	1	NA	NA	7	314	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTATAGCGTGCTTA	7424	False	NA	NA	False	NA	NA	NA	23718082	23720435	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_23718470_23719440
ES_00016040	chr13	+	558	1	FSM	ENSMUSG00000071478.7	ENSMUST00000090776.7	572	1	70	-56	70	56	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCACTAGTATACCAAAT	1635	False	NA	NA	False	NA	NA	NA	23758624	23759182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23758600_23759200
ES_00016041	chr13	+	3081	1	FSM	ENSMUSG00000036181.3	ENSMUST00000040914.3	1560	1	5	-1526	5	1526	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGAACAGTGGTCACCTG	NA	False	NA	NA	False	ATTAAA	-9	NA	23922795	23925876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23922800_23925900
ES_00016042	chr13	+	357	1	FSM	ENSMUSG00000069266.6	ENSMUST00000102965.4	397	1	-12	52	-12	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAAAAGGTCCTTTTCAG	6275	False	NA	NA	False	ACTAAA	-17	NA	23940983	23941340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_23941000_23941300
ES_00016043	chr13	+	799	2	FSM	ENSMUSG00000038732.16	ENSMUST00000153269.3	854	2	49	6	49	-6	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAACCTCTGTCTGGTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	30320520	30347602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_30320746_30347028
ES_00016044	chr13	+	2327	2	FSM	ENSMUSG00000038402.3	ENSMUST00000042054.3	2363	2	36	0	36	0	multi-exon	TRUE	canonical	2	3	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGTTGTTCTAGGGACCC	994	False	NA	NA	False	AATAAA	-13	NA	31809834	31815386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_31811240_31814464
ES_00016045	chr13	+	1951	7	FSM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	242	0	7	0	multi-exon	TRUE	canonical	0	0	junction_3	2.08166599946613	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTCTTCTTCTTTTGAG	NA	False	NA	NA	False	AATAAA	-26	NA	33149433	33163050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507_33161664_33161937
ES_00016047	chr13	+	5032	17	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_15	43.5781894271664	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACTACTTAATAGGAAG	NA	False	NA	-33	True	NA	NA	NA	35059486	35090000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35087257_35088026_35088073_35089865
ES_00016048	chr13	+	5843	16	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	4	-2	intron_retention	FALSE	canonical	3	90	junction_15	30.2599111403557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCGTCTACTGGCATTT	NA	False	NA	12	True	AATAAA	-17	NA	35059490	35090045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35088073_35089865
ES_00016049	chr13	+	4066	19	NIC	ENSMUSG00000021413.10	novel	2572	17	NA	NA	4	0	intron_retention	FALSE	canonical	3	35	junction_16	53.2687108493866	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059490	35090047	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35086659_35087169_35087257_35088026_35088073_35089865
ES_00016054	chr13	+	1757	9	FSM	ENSMUSG00000038683.17	ENSMUST00000174472.3	1757	9	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	42.5147033389626	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	AGTAAA	-26	NA	41154741	41166489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
ES_00016055	chr13	+	1959	15	Fusion	ENSMUSG00000038651.16_ENSMUSG00000114388.2	novel	662	6	NA	NA	1438	0	multi-exon	FALSE	canonical	2	2	junction_6	12.1077222785919	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTAGTGTGGTTAATTG	NA	False	NA	4	True	AATAAA	-16	NA	41303709	41332506	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_+_41303750_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310330_41310402_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327673_41327774_41327873_41327933_41330358_41330421_41331657
ES_00016056	chr13	+	8770	9	NIC	ENSMUSG00000021366.9	novel	501	4	NA	NA	-35	0	intron_retention	FALSE	canonical	1	1	junction_1	8.76070773396762	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGGTGCTTACGTCTC	NA	False	NA	2	True	AGTAAA	-15	NA	42205844	42338502	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_42205932_42208875_42209019_42276635_42276690_42307855_42313795_42316826_42316961_42317692_42317869_42321037_42321140_42334907_42335408_42336867
ES_00016057	chr13	+	501	4	FSM	ENSMUSG00000021366.9	ENSMUST00000220525.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGATGACTGCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	42205879	42308107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_42205932_42208875_42209019_42276635_42276690_42307855
ES_00016058	chr13	+	1667	9	NIC	ENSMUSG00000054021.7	novel	1793	9	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	67.4906243488679	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTTATTTTTTTGTACT	NA	False	NA	8	True	ATTAAA	-20	NA	43519146	43548677	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_43519457_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ES_00016059	chr13	+	838	2	FSM	ENSMUSG00000112983.2	ENSMUST00000222336.2	843	2	0	5	0	-5	multi-exon	FALSE	canonical	1	2	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTGATCTTCTCTTGC	NA	False	NA	NA	False	AATAAA	-9	NA	43683695	43685252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_43683855_43684573
ES_00016060	chr13	+	476	3	FSM	ENSMUSG00000038518.16	ENSMUST00000172830.8	476	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	365	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGTGAGTTGAAAGTGG	8905	False	NA	NA	False	NA	NA	NA	44883270	44976986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_44883412_44885188_44885393_44976855
ES_00016063	chr13	+	4585	8	FSM	ENSMUSG00000038068.16	ENSMUST00000068891.12	4640	8	55	0	55	0	multi-exon	FALSE	canonical	1	1	junction_6	2.49079939630896	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGTTAGCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	47276186	47401467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_47276350_47360835_47361027_47373969_47374075_47382415_47382477_47390878_47391078_47393192_47393338_47396339_47396430_47397836
ES_00016064	chr13	+	1312	4	FSM	ENSMUSG00000037966.16	ENSMUST00000131280.2	706	4	-103	-503	-52	18	multi-exon	FALSE	canonical	2	4	junction_2	185.030327844443	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTATACTCTTGGGACA	NA	False	NA	31	True	AATAAA	-33	NA	49340908	49349738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49341114_49347211_49347441_49348314_49348534_49349079
ES_00016065	chr13	+	1321	5	FSM	ENSMUSG00000037966.16	ENSMUST00000120733.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	186.87077754427	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49341000	49349720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49341114_49344560_49344735_49347211_49347441_49348369_49348534_49349079
ES_00016067	chr13	+	504	5	FSM	ENSMUSG00000037851.14	ENSMUST00000171510.2	504	5	0	0	0	0	multi-exon	FALSE	canonical	2	41	junction_2	649.017478578197	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGACAGCCACCTTTC	NA	False	NA	NA	False	NA	NA	NA	49859281	49865257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49859362_49860154_49860282_49861885_49861956_49863054_49863250_49865225
ES_00016068	chr13	+	456	1	FSM	ENSMUSG00000113254.2	ENSMUST00000222073.2	919	1	150	313	150	-313	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCAAGACCCACATTACT	4338	False	NA	NA	False	NA	NA	NA	49974353	49974809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_49974400_49974800
ES_00016069	chr13	+	1187	3	Antisense	novelGene_ENSMUSG00000094886.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	10.5	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTAGTGTAATTGGATTC	NA	False	NA	NA	False	AGTAAA	-18	NA	50097292	50105092	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_50097471_50100049_50100190_50104223
ES_00016070	chr13	+	1160	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	0	7	0	-7	multi-exon	FALSE	canonical	1	2	junction_1	0	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGAGCAGCTCTGATGT	NA	False	NA	NA	False	AATAAA	-12	NA	51325057	51329217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_51325661_51328660
ES_00016071	chr13	+	2281	13	NNC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	112	-89	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	23.2516427137716	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGAGTTTGTGATCC	NA	False	NA	NA	False	NA	NA	NA	52737320	52797561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52797392
ES_00016073	chr13	+	654	3	FSM	ENSMUSG00000025870.11	ENSMUST00000156024.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	15	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGGATTGCATGGCATA	2706	False	NA	NA	False	NA	NA	NA	54722859	54726829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_54723091_54723562_54723762_54726605
ES_00016074	chr13	+	1088	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	22	-2	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAACAGTGGTGGTTTA	NA	False	NA	8	True	AATAAA	-9	NA	54937297	54944579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
ES_00016076	chr13	+	12028	24	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	35.0361951650663	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTTGCCCTGTGTTTT	NA	False	NA	15	True	AGTAAA	-18	NA	55357607	55466138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
ES_00016077	chr13	+	5981	23	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	26	-5041	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	31.62764378261	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAACAGAAACTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	55357620	55458527	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149
ES_00016078	chr13	+	12163	25	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_23	56.5490046822714	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGGCCCTTGCCCTGTG	NA	False	NA	11	True	AGTAAA	-14	NA	55359631	55466134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459758_55459797_55459931
ES_00016079	chr13	+	976	6	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_5	104.903002816888	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359652	55388660	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388358
ES_00016080	chr13	+	851	6	NNC	ENSMUSG00000021488.9	novel	852	6	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_5	123.695755788143	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTCTTTTTTTTCCC	NA	False	NA	NA	False	AATACA	-17	NA	55359886	55388662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55359921_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388358
ES_00016081	chr13	+	6012	21	NNC	ENSMUSG00000021488.9	novel	426	5	NA	NA	2823	-5041	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	54.4168172534925	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAACAGAAACTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	55363021	55458527	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55363325_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149
ES_00016083	chr13	+	1846	10	FSM	ENSMUSG00000052087.15	ENSMUST00000135851.2	1846	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.39664500999739	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATGAGGTGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55526981	55532499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_55527260_55527392_55527505_55527817_55527931_55528712_55528917_55530657_55530735_55530930_55531058_55531147_55531230_55531337_55531385_55531466_55531582_55531808
ES_00016085	chr13	+	4517	3	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	-40	0	at_least_one_novel_splicesite	TRUE	canonical	3	158	junction_2	37.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTACTACTTTATTTT	NA	False	NA	19	True	AATAAA	-19	NA	55840896	55851313	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55841161_55846885_55848033_55848207
ES_00016086	chr13	+	599	5	NNC	ENSMUSG00000021496.13	novel	546	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	177.800977218912	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875180	55924643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_55875288_55880748_55880881_55881569_55881623_55923179_55923261_55924417
ES_00016087	chr13	+	2274	9	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	-558	-2335	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	5.67340285895511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAATGTGTTTTTGCGT	NA	False	NA	NA	False	AATAAA	-20	NA	56585609	56619717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_56585844_56585944_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
ES_00016088	chr13	+	423	2	FSM	ENSMUSG00000114929.2	ENSMUST00000224942.2	474	2	51	0	51	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACACGCTCGCTTGCTCGC	NA	False	NA	NA	False	NA	NA	NA	58380007	58384564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_58380238_58384371
ES_00016089	chr13	+	3451	4	NNC	ENSMUSG00000035367.10	novel	2447	4	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	169.267703817224	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCGTGGTCATGG	NA	False	NA	5	True	NA	NA	NA	58550564	58558958	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_58550604_58552381_58552470_58554815_58554905_58555723
ES_00016090	chr13	+	779	10	FSM	ENSMUSG00000021555.16	ENSMUST00000166923.9	779	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	258.292589379554	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTCATAGCCTTTACTAA	1309	False	NA	NA	False	NA	NA	NA	59733207	59756631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748859_59755059_59755127_59755201_59755246_59755958_59756010_59756574
ES_00016091	chr13	+	4492	1	FSM	ENSMUSG00000114535.2	ENSMUST00000225230.2	2354	1	-2237	99	-2237	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCATTTATCAACACACA	NA	False	NA	NA	False	NA	NA	NA	59748885	59753377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59748900_59753400
ES_00016092	chr13	+	3082	7	FSM	ENSMUSG00000021555.16	ENSMUST00000163395.8	3082	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	271.519796699983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	59757070	59775447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773214
ES_00016094	chr13	+	3912	1	ISM	ENSMUSG00000091311.4	ENSMUST00000165133.3	4287	4	3100	0	3100	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTCTTGTGCACTTTGT	NA	False	NA	NA	False	AGTAAA	-14	NA	59863197	59867109	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_59863200_59867100
ES_00016095	chr13	+	4939	2	FSM	ENSMUSG00000089875.3	ENSMUST00000162450.3	4862	2	-18	-59	-17	59	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCCTTCTGGTCTAAGT	NA	False	NA	NA	False	NA	NA	NA	59917761	59923280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_59918161_59918740
ES_00016096	chr13	+	1493	4	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	3	43503	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	79.4648769373405	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATGTGTCAAACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	61803119	61935087	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_61803248_61839114_61839135_61928757_61928798_61933782
ES_00016097	chr13	+	870	1	FSM	ENSMUSG00000113728.2	ENSMUST00000222707.2	1200	1	-52	382	-52	-382	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCCTCCTGATTCTAACT	9412	False	NA	NA	False	NA	NA	NA	61813702	61814572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_61813700_61814600
ES_00016098	chr13	+	344	2	FSM	ENSMUSG00000113626.2	ENSMUST00000221961.2	353	2	9	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCCTCCTGAGAGAATA	NA	False	NA	NA	False	NA	NA	NA	61952079	61974326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_61952220_61974122
ES_00016099	chr13	+	2578	5	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	32	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	29.7772983999556	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTTTAAAACCAGTCGT	NA	False	NA	NA	False	NA	NA	NA	61952111	62009967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62009042_62009209
ES_00016102	chr13	+	278	1	FSM	ENSMUSG00000113504.2	ENSMUST00000221048.2	278	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTCTGCTCTGAGAAG	9924	False	NA	NA	False	NA	NA	NA	62273542	62273820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62273500_62273800
ES_00016103	chr13	+	1580	5	FSM	ENSMUSG00000074867.5	ENSMUST00000221542.2	1560	5	-20	0	-4	0	multi-exon	FALSE	canonical	1	1	junction_3	23.2634369773686	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCACACTGGAGAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	62277695	62383958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_62277843_62351245_62351373_62351567_62351629_62381382_62381444_62382774
ES_00016105	chr13	+	1799	1	Intergenic	novelGene_1085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	18	True	AATAAA	-19	NA	62322220	62324019	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62322200_62324000
ES_00016106	chr13	+	1571	5	NNC	ENSMUSG00000021458.18	novel	587	3	NA	NA	-1831	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	54.8241507002161	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCACTCTGGCCTT	NA	False	NA	25	True	AATAAA	-25	NA	63418483	63450684	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_63418614_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ES_00016107	chr13	+	903	5	NNC	ENSMUSG00000021458.18	novel	587	3	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	51.3681564785033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63420573	63450096	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_63420624_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ES_00016108	chr13	+	1960	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	330	-827	13	-1	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCACTCTGGCCTT	NA	False	NA	25	True	AATAAA	-25	NA	63420644	63450684	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ES_00016109	chr13	+	300	1	FSM	ENSMUSG00000113469.2	ENSMUST00000222150.2	474	1	-8	182	-8	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCATTGTGGATGTTAAG	NA	False	NA	NA	False	AATAGA	-18	NA	64850963	64851263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_64851000_64851300
ES_00016110	chr13	+	649	1	FSM	ENSMUSG00000113468.2	ENSMUST00000221770.2	649	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGAAAAGATTTTTACC	NA	False	NA	NA	False	NA	NA	NA	65635621	65636270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_65635600_65636300
ES_00016111	chr13	+	375	1	Intergenic	novelGene_1104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCTATGGCTTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	65775273	65775648	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65775300_65775600
ES_00016112	chr13	+	1160	3	Intergenic	novelGene_1117	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	71	junction_1	64	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAAAAGCTCTGCATTGC	NA	False	NA	NA	False	NA	NA	NA	66044982	66053497	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66045092_66052247_66052375_66052573
ES_00016113	chr13	+	476	1	Intergenic	novelGene_1118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	895	False	NA	NA	False	AATAAA	-24	NA	66078760	66079236	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66078800_66079200
ES_00016114	chr13	+	404	4	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-162898	1116	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	77.9501265054921	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCTTATAAATGTAATC	NA	False	NA	NA	False	NA	NA	NA	66098395	66269134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66098504_66267450_66267578_66267777_66267839_66269026
ES_00016115	chr13	+	637	1	Intergenic	novelGene_1121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCATGAAATGAATTTCTA	7070	False	NA	58	True	AAAACA	-21	NA	66120520	66121157	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66120500_66121200
ES_00016116	chr13	+	681	1	FSM	ENSMUSG00000055763.10	ENSMUST00000069489.10	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGATTGCACATGGAATT	NA	False	NA	NA	False	NA	NA	NA	66155550	66156231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_66155600_66156200
ES_00016117	chr13	+	1647	1	FSM	ENSMUSG00000113477.2	ENSMUST00000221192.2	1284	1	4	-367	4	367	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGTGTACCCCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	66311596	66313243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_66311600_66313200
ES_00016118	chr13	+	1829	5	FSM	ENSMUSG00000113350.3	ENSMUST00000222605.2	767	5	-323	-739	-323	739	multi-exon	FALSE	canonical	0	0	junction_2	5.52268050859363	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTTCAATCGACAGCAAT	NA	False	NA	NA	False	TATAAA	-3	NA	66341173	66345312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_66341594_66341741_66341914_66342262_66342345_66343066_66343121_66344211
ES_00016120	chr13	+	2633	4	Antisense	novelGene_ENSMUSG00000114343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	27.178422814186	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCACCAGACTCTTTCC	129	False	NA	NA	False	NA	NA	NA	66589305	66616220	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_+_66589495_66608256_66610037_66610237_66610441_66615759
ES_00016121	chr13	+	2817	3	Intergenic	novelGene_1129	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	38	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTTTCTTCCTCGGTTT	NA	False	NA	NA	False	AATAAA	-32	NA	66638669	66648552	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66638924_66645539_66645683_66646132
ES_00016122	chr13	+	548	3	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6322	-2718	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	19.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGGAACTATACTCTGTA	NA	False	NA	NA	False	NA	NA	NA	66667720	66674690	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66667826_66674049_66674177_66674374
ES_00016125	chr13	+	451	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-8999	721	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	45.0579873299088	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	5546	False	NA	11	True	NA	NA	NA	66711985	66724696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66724531
ES_00016126	chr13	+	740	5	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-8999	20990	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	41.8090899207337	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGTGTATAGTCTCATA	5546	False	NA	NA	False	NA	NA	NA	66711985	66744965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66744311_66744439_66744638
ES_00016127	chr13	+	799	4	NNC	ENSMUSG00000114327.2	novel	818	2	NA	NA	3	-124	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_3	19.5959179422654	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTCGTCTGTTCATGATT	NA	False	NA	NA	False	NA	NA	NA	66829020	66856897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_66829202_66843359_66843401_66843752_66843820_66856387
ES_00016128	chr13	+	885	2	Intergenic	novelGene_1132	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTTTTTCTAGAGGTA	NA	False	NA	NA	False	NA	NA	NA	66970660	66972318	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66970729_66971501
ES_00016129	chr13	+	552	1	FSM	ENSMUSG00000114603.2	ENSMUST00000225725.2	646	1	-10	104	-10	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTGAGTTCTCTGAGGCC	3437	False	NA	NA	False	NA	NA	NA	67237538	67238090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67237500_67238100
ES_00016130	chr13	+	2587	4	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	-71	3	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_1	9.80929264637478	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTATCTCATCTTATTC	NA	False	NA	NA	False	AATAAA	-28	NA	67321174	67332111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_67321240_67324511_67324639_67325128_67325225_67329812
ES_00016131	chr13	+	596	1	FSM	ENSMUSG00000114805.2	ENSMUST00000223769.2	791	1	-7	202	-7	-202	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCAGCTGCTATATGCTT	NA	False	NA	NA	False	GGGGCT	-40	NA	67335443	67336039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67335400_67336000
ES_00016132	chr13	+	955	1	FSM	ENSMUSG00000097906.2	ENSMUST00000180422.2	955	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3168	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCGCCAAAGCAACCAAGT	NA	False	NA	NA	False	NA	NA	NA	67958364	67959319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67958400_67959300
ES_00016133	chr13	+	2284	4	FSM	ENSMUSG00000030446.18	ENSMUST00000012725.8	2277	4	-7	0	-3	0	multi-exon	FALSE	canonical	2	2	junction_1	10.2089285540757	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGTGATTAGTATTGC	NA	False	NA	NA	False	AATAAA	-14	NA	67961927	67975118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_67962016_67970402_67970487_67971218_67971315_67973102
ES_00016136	chr13	+	4179	18	FSM	ENSMUSG00000021595.19	ENSMUST00000022087.7	4164	18	-15	0	-15	0	multi-exon	FALSE	canonical	3	1529	junction_6	134.755603461822	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTGTGTGTGCTTGTATT	NA	False	NA	NA	False	AGTAAA	-37	NA	69760347	69783899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
ES_00016137	chr13	+	1683	2	FSM	ENSMUSG00000021611.10	ENSMUST00000223196.2	2663	2	-21	1001	-21	-1001	multi-exon	FALSE	canonical	3	27	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCATGGCTGGTCTCCA	2102	False	NA	NA	False	NA	NA	NA	73775008	73776793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_73775368_73775469
ES_00016138	chr13	+	2351	16	NIC	ENSMUSG00000057649.7	novel	1111	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_1	41.4208750377016	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74086224	74108936	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_74086355_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ES_00016139	chr13	+	776	3	FSM	ENSMUSG00000021578.18	ENSMUST00000162376.2	762	3	-14	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	206.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGGGAACTACTTGT	4392	False	NA	NA	False	NA	NA	NA	74498469	74505167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74498528_74500980_74501106_74504574
ES_00016141	chr13	+	837	1	FSM	ENSMUSG00000113660.2	ENSMUST00000222151.2	1058	1	297	-76	297	76	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTTATTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	74681941	74682778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_74681900_74682800
ES_00016142	chr13	+	421	1	ISM	ENSMUSG00000086743.3	ENSMUST00000129154.3	964	2	477	154	477	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAATTTTGGACCAAAGA	NA	False	NA	NA	False	NA	NA	NA	75012900	75013321	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_75012900_75013300
ES_00016143	chr13	+	375	2	Genic_Genomic	ENSMUSG00000074800.5	novel	276	1	NA	NA	0	18024	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGCAAATGGTTCCAAG	3163	False	NA	NA	False	NA	NA	NA	75793014	75811314	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_75793366_75811290
ES_00016144	chr13	+	363	2	Genic_Genomic	ENSMUSG00000074800.5	novel	276	1	NA	NA	0	67535	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTTGAGCATGGTTATG	3163	False	NA	NA	False	NA	NA	NA	75793014	75860825	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_75793344_75860791
ES_00016145	chr13	+	3545	14	NNC	ENSMUSG00000001542.8	novel	4382	12	NA	NA	0	41665	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	157.449606853192	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACACACATGATCATCTCA	6280	False	NA	NA	False	NA	NA	NA	75855703	75962148	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798_75919524_75919547_75920474_75962123
ES_00016146	chr13	+	6572	45	NNC	ENSMUSG00000033991.10	novel	6976	45	NA	NA	64	-69	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	42.0175275803675	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTGTTTACAATATATG	NA	False	NA	NA	False	ATTAAA	-8	NA	76246916	76338156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259852_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ES_00016148	chr13	+	1512	2	Intergenic	novelGene_1148	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCGTTTTCTCGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	80849220	80854191	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_80849928_80853386
ES_00016150	chr13	+	991	1	FSM	ENSMUSG00000114687.2	ENSMUST00000225105.2	997	1	-94	100	-94	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCGGATGTTGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	83980364	83981355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_83980400_83981400
ES_00016151	chr13	+	2935	7	ISM	ENSMUSG00000035762.12	ENSMUST00000225069.2	2414	11	59454	0	30509	0	3prime_fragment	FALSE	canonical	0	0	junction_5	74.2173983795055	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGAGTGTAATTTATT	NA	False	NA	17	True	ATTAAA	-18	NA	84429898	84443985	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_+_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ES_00016152	chr13	+	1226	6	FSM	ENSMUSG00000012422.15	ENSMUST00000161457.8	1226	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	582.012577183689	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAAAAATGTATGAGA	NA	False	NA	NA	False	GATAAA	-2	NA	90237852	90292026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90267458_90267526_90276859_90276973_90291175
ES_00016153	chr13	+	2996	16	FSM	ENSMUSG00000042102.8	ENSMUST00000048001.8	2992	16	-11	7	-11	-7	multi-exon	FALSE	canonical	2	5	junction_1	2.8720878971384	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATGACAGGGACAGACT	2463	False	NA	NA	False	AATAAA	-21	NA	93810929	93889334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_93811041_93813542_93813712_93823435_93823535_93825032_93825198_93828379_93828585_93840294_93840544_93843138_93843338_93845180_93845351_93845689_93845844_93847800_93847967_93848553_93848685_93851965_93852184_93854062_93854221_93857066_93857127_93880800_93880936_93888727
ES_00016154	chr13	+	633	5	FSM	ENSMUSG00000042043.7	ENSMUST00000220819.2	633	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	650.566820165308	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_94925511_94951618_94951693_94968867_94968974_94973615_94973703_94979157
ES_00016155	chr13	+	3059	14	NNC	ENSMUSG00000042015.18	novel	3063	13	NA	NA	26	3181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	18.5819789265945	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAACCAGAGGACACAC	NA	False	NA	NA	False	NA	NA	NA	95112881	95163003	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_95113098_95114977_95115094_95131757_95131807_95133563_95133696_95136373_95136437_95142238_95142351_95145315_95145379_95146792_95146904_95151538_95151724_95153834_95153957_95154624_95154714_95155339_95155474_95158177_95159820_95162978
ES_00016156	chr13	+	1733	1	FSM	ENSMUSG00000088108.3	ENSMUST00000157483.3	138	1	-1602	7	-1602	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTAGTGTTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	95465505	95467238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_95465500_95467200
ES_00016157	chr13	+	767	1	FSM	ENSMUSG00000113743.2	ENSMUST00000221090.2	701	1	23	-89	23	89	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTATGTGTGTTTAAATA	NA	False	NA	NA	False	AATAAA	-34	NA	96513460	96514227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_96513500_96514200
ES_00016158	chr13	+	5292	25	NIC	ENSMUSG00000109561.2	novel	5859	25	NA	NA	33	-246	combination_of_known_splicesites	FALSE	canonical	2	5	junction_13	3.76017139089283	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTTGCTTTTATTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	96884812	97046301	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_+_96884876_96884972_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816_96916894_96928208_96928253_96935118_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103_96970275_96988163_96988302_96989108_96989252_97002838_97003002_97005879_97005996_97009144_97009233_97010446_97010544_97014652_97015632_97029466_97029608_97040538_97040639_97045991
ES_00016159	chr13	+	6016	13	FSM	ENSMUSG00000041817.15	ENSMUST00000169863.9	6013	13	-3	0	-3	0	multi-exon	FALSE	canonical	2	3	junction_1	80.3818577513332	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCCTTTACAACTTAGT	4357	False	NA	NA	False	ACTAAA	-27	NA	97203790	97267521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_97203831_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
ES_00016161	chr13	+	3708	1	Genic_Genomic	ENSMUSG00000114926.2	novel	NA	NA	NA	NA	-1669	-2488	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGGCAGCCATGGTTTG	NA	False	NA	8	True	NA	NA	NA	97646042	97649750	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_97646000_97649800
ES_00016162	chr13	+	2186	9	FSM	ENSMUSG00000021661.17	ENSMUST00000150352.3	2217	9	27	4	27	-4	multi-exon	TRUE	canonical	1	1	junction_8	65.6047587831858	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGACTCTTTGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	98399608	98411258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98410427
ES_00016163	chr13	+	1957	1	FSM	ENSMUSG00000048603.9	ENSMUST00000062252.2	883	1	-46	-1028	-46	1028	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAACTAGTTCTTTTTGT	NA	False	NA	NA	False	TATAAA	-32	NA	98452883	98454840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_98452900_98454800
ES_00016164	chr13	+	632	1	Genic_Genomic	ENSMUSG00000114458.2	novel	NA	NA	NA	NA	2386	453	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCCCTCTAACACAGAG	NA	False	NA	NA	False	NA	NA	NA	98940065	98940697	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_+_98940100_98940700
ES_00016165	chr13	+	216	1	Intergenic	novelGene_1177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAGTACTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99967178	99967394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_99967200_99967400
ES_00016166	chr13	+	1981	2	FSM	ENSMUSG00000052293.15	ENSMUST00000190594.2	1962	2	-19	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	100788114	100792568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_100788226_100790698
ES_00016167	chr13	+	327	1	Intergenic	novelGene_1179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCTCCAGCCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	100881946	100882273	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_100881900_100882300
ES_00016168	chr13	+	1326	10	FSM	ENSMUSG00000021714.16	ENSMUST00000070761.10	1306	10	-20	0	-20	0	multi-exon	FALSE	canonical	1	3	junction_9	143.8340092684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTTATGTAAAATATTG	NA	False	NA	NA	False	AATAAA	-13	NA	104365442	104383641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104383074
ES_00016169	chr13	+	1210	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-20	99	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	172.702984883453	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGACTATGCATGCCCT	NA	False	NA	NA	False	NA	NA	NA	104365442	104386224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_+_104365593_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ES_00016177	chr13	+	2068	3	FSM	ENSMUSG00000047789.6	ENSMUST00000223674.2	2063	3	-5	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	23	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCAAGCTTCAGTTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	112797309	112810219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_+_112797407_112806120_112806266_112808393
ES_00016186	chr13	-	3934	13	NNC	ENSMUSG00000021215.16	novel	2680	12	NA	NA	0	-308	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	66.3355841326676	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATAGCAAACATCTTCAT	NA	False	NA	NA	False	NA	NA	NA	3968220	3932325	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292_3943540_3957796_3957857_3962867_3962935_3967937
ES_00016188	chr13	-	1726	13	FSM	ENSMUSG00000021196.15	ENSMUST00000148999.8	1726	13	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_6	84.7667961068615	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAACCTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	6698761	6652436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ES_00016190	chr13	-	4007	14	FSM	ENSMUSG00000021156.18	ENSMUST00000110638.8	4003	14	0	-4	0	1	multi-exon	FALSE	canonical	3	27	junction_3	41.8502543239853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCAGTAAGCTGCTTC	NA	False	NA	3	True	AATAAA	-23	NA	9814524	9734867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814381
ES_00016191	chr13	-	877	7	ISM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	171	10834	17	-529	5prime_fragment	FALSE	canonical	3	34	junction_6	49.4873721266345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAATTCATACATGAGTAA	NA	False	NA	8	True	ATTAAA	-30	NA	9815179	9745702	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
ES_00016193	chr13	-	3799	1	FSM	ENSMUSG00000113789.2	ENSMUST00000221565.2	1824	1	-1983	8	-1983	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGTCTGAAGTTGCCAC	4340	False	NA	NA	False	NA	NA	NA	12196150	12192351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_12192400_12196200
ES_00016194	chr13	-	1503	1	FSM	ENSMUSG00000061724.6	ENSMUST00000074863.6	733	1	-76	-694	-76	694	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGAGCCT	NA	False	NA	NA	False	AATAAA	-29	NA	13407554	13406051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_13406100_13407600
ES_00016195	chr13	-	1581	8	NNC	ENSMUSG00000021306.12	novel	2351	8	NA	NA	1	-511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.3853332093257	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAATCTGGCTATTTCAGT	NA	False	NA	NA	False	AATAAA	-17	NA	13568179	13533711	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_13534009_13535520_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ES_00016196	chr13	-	4280	5	NIC	ENSMUSG00000021302.11	novel	1340	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	8	junction_4	116.164484675825	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATGTTAATTTGCTCA	NA	False	NA	-10	True	TATAAA	-1	NA	14237977	14225243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234036_14237790
ES_00016201	chr13	-	2821	6	NIC	ENSMUSG00000021327.20	novel	2600	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	39.8015075091384	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGGTTCTTACTTGGGT	NA	False	NA	3	True	AATAAA	-24	NA	21586865	21571171	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586561
ES_00016202	chr13	-	3218	5	FSM	ENSMUSG00000055313.16	ENSMUST00000151743.9	3225	5	0	7	0	-7	multi-exon	FALSE	canonical	1	2	junction_2	3.20156211871642	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTCTAAATTTCCTAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	21625223	21605454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_21607795_21612437_21612549_21617560_21617713_21618520_21618842_21624929
ES_00016203	chr13	-	219	1	FSM	ENSMUSG00000088148.3	ENSMUST00000157523.3	132	1	16	-103	16	103	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATATAAAATGTAGAAATAA	NA	False	NA	NA	False	CATAAA	-26	NA	22081203	22080984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_22081000_22081200
ES_00016205	chr13	-	398	2	Genic_Genomic	ENSMUSG00000069270.7_ENSMUSG00000069272.7	novel	704	1	NA	NA	54	-171	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGCTCTTTTCAGAGCC	NA	False	NA	NA	False	NA	NA	NA	23867877	23754861	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_23755171_23867788
ES_00016206	chr13	-	2933	6	FSM	ENSMUSG00000006611.16	ENSMUST00000091706.14	3572	6	0	639	0	-639	multi-exon	FALSE	canonical	0	0	junction_2	1.85472369909914	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGAATCTGTCAATCTGT	NA	False	NA	NA	False	NA	NA	NA	23894837	23886655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23888410_23889606_23889718_23889843_23890120_23890749_23891050_23892010_23892275_23894609
ES_00016207	chr13	-	209	1	FSM	ENSMUSG00000060093.7	ENSMUST00000102964.4	539	1	176	154	176	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTTTTAATTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	23945037	23944828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_23944800_23945000
ES_00016208	chr13	-	1993	1	FSM	ENSMUSG00000045835.6	ENSMUST00000055915.6	1993	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCTTTTCAGGCCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	26954148	26952155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_26952200_26954100
ES_00016209	chr13	-	2534	15	NIC	ENSMUSG00000006191.18	novel	2629	16	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	48.9583850774079	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTGTTTATTGGACTT	NA	False	NA	NA	False	AATAAA	-22	NA	30039626	29509284	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_29510212_29538612_29538778_29541482_29541567_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ES_00016210	chr13	-	4369	29	NNC	ENSMUSG00000021357.15	novel	4375	29	NA	NA	2565	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_28	37.5328427608979	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTTTGTGTCTTCA	NA	False	NA	-2	True	AATAAA	-20	NA	31131716	30997901	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31130347_31130407_31131603
ES_00016211	chr13	-	340	1	Intergenic	novelGene_1026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTGTTGCGGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	31865485	31865145	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_31865100_31865500
ES_00016212	chr13	-	1834	7	FSM	ENSMUSG00000038372.15	ENSMUST00000178294.8	2003	7	0	169	0	-169	multi-exon	FALSE	canonical	3	65	junction_1	9.08142181721685	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACACAAAGGTTACCTTCA	NA	False	NA	NA	False	NA	NA	NA	32522568	32283378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
ES_00016213	chr13	-	946	4	ISM	ENSMUSG00000038267.16	ENSMUST00000143353.2	503	5	-392	452	0	-452	5prime_fragment	FALSE	canonical	3	14	junction_3	4.78423336480244	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTCCTGACAAGGTCT	NA	False	NA	NA	False	NA	NA	NA	34528578	34405804	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_34406055_34482979_34483135_34489140_34489245_34528141
ES_00016214	chr13	-	1813	5	FSM	ENSMUSG00000021411.17	ENSMUST00000053459.15	2684	5	862	9	57	-2	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTAGAGAGGATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	34836607	34811825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_34812872_34814333_34814446_34822147_34822266_34822989_34823082_34836162
ES_00016215	chr13	-	858	1	FSM	ENSMUSG00000114127.2	ENSMUST00000221617.2	783	1	8	-83	8	83	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	35050552	35049694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_35049700_35050600
ES_00016216	chr13	-	1056	7	FSM	ENSMUSG00000021418.16	ENSMUST00000174230.2	1053	7	0	-3	0	0	multi-exon	FALSE	canonical	2	9	junction_5	206.52017657685	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36090327	36080694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36088401_36088547_36090186
ES_00016218	chr13	-	4647	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	0	-29	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	334.416072243844	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGCTCACTGAGAACT	5846	False	NA	NA	False	NA	NA	NA	38178193	38150671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_38150698_38160088_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ES_00016219	chr13	-	1052	5	NNC	ENSMUSG00000001707.9	novel	2553	4	NA	NA	0	56593	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	633.421413831266	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	38842986	38771589	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_38771621_38829666_38830287_38838971_38839068_38840015_38840217_38842882
ES_00016221	chr13	-	224	1	Intergenic	novelGene_1036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGTACAAAAAGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	41152166	41151942	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_41151900_41152200
ES_00016222	chr13	-	2728	4	ISM	ENSMUSG00000021362.8	ENSMUST00000021791.8	3073	5	4309	-1	-191	0	3prime_fragment	FALSE	canonical	3	9	junction_3	1.69967317119759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAATCTCTTCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	41259350	41254902	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_41257166_41258044_41258171_41258886_41259000_41259124
ES_00016227	chr13	-	421	4	FSM	ENSMUSG00000046876.17	ENSMUST00000221082.2	3753	4	129	3203	78	11	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGATGAAGGCAAATGGTA	NA	False	NA	NA	False	NA	NA	NA	46118355	45949007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_45949114_46005803_46005933_46109930_46110052_46118290
ES_00016228	chr13	-	1025	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	26	2	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTAGCCATGGTTTCTG	NA	False	NA	0	True	ATTAAA	-19	NA	47196660	47178652	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
ES_00016229	chr13	-	1946	5	FSM	ENSMUSG00000021377.16	ENSMUST00000138401.2	1946	5	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	73.852894323784	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTAATCTTTGTCTGCT	NA	False	NA	-8	True	AATAAA	-27	NA	47251914	47238250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630
ES_00016233	chr13	-	5145	19	NNC	ENSMUSG00000038014.8	novel	5105	18	NA	NA	0	86621	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.6872179357449	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTCCCAGATTTTACCT	6383	False	NA	NA	False	NA	NA	NA	49121493	48946073	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_48946111_49032691_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
ES_00016234	chr13	-	774	1	FSM	ENSMUSG00000113521.2	ENSMUST00000222129.2	849	1	104	-29	104	29	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTTCACACTGCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	51360043	51359269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_51359300_51360000
ES_00016235	chr13	-	429	2	FSM	ENSMUSG00000021451.17	ENSMUST00000146238.2	498	2	69	0	-65	0	multi-exon	FALSE	canonical	2	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGGTAGTGTTGAGAAC	NA	False	NA	NA	False	GGGGCT	-11	NA	51910769	51879326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_51879579_51910592
ES_00016236	chr13	-	2052	3	NNC	ENSMUSG00000056749.8	novel	2026	2	NA	NA	0	52872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTACTTTGTCTCCTCAGA	NA	False	NA	NA	False	NA	NA	NA	53135109	53068372	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_53068401_53121246_53123058_53134896
ES_00016237	chr13	-	3748	9	NNC	ENSMUSG00000021464.16	novel	3985	9	NA	NA	115229	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	35.4788669492136	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTATTATCTCTGGG	NA	False	NA	-28	True	NA	NA	NA	53314465	53263352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
ES_00016238	chr13	-	571	3	Genic_Genomic	ENSMUSG00000086567.2	novel	385	1	NA	NA	-35	59380	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTCACTGGAGAGCCAAG	NA	False	NA	NA	False	NA	NA	NA	54647937	54588137	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_54588150_54627453_54627479_54647403
ES_00016239	chr13	-	2353	7	NNC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	6340	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.142719684049	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGAGGTAGAGACAGGAGA	NA	False	NA	NA	False	NA	NA	NA	54616639	54600309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_54600353_54606651_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ES_00016243	chr13	-	208	1	Intergenic	novelGene_1061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTAATCCCAGCATTCA	120	False	NA	NA	False	NA	NA	NA	55329629	55329421	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_55329400_55329600
ES_00016244	chr13	-	365	2	Intergenic	novelGene_1064	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	323	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7235	False	NA	NA	False	NA	NA	NA	55563885	55538029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_55538344_55563834
ES_00016245	chr13	-	367	2	Intergenic	novelGene_1065	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	212	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4157	False	NA	NA	False	NA	NA	NA	55566963	55538029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_55538344_55566910
ES_00016246	chr13	-	4343	12	NNC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	51.3880070904416	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTATGATGGTGATTTG	NA	False	NA	-4	True	GATAAA	-19	NA	55718889	55687128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55697774_55697821_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
ES_00016249	chr13	-	214	1	Intergenic	novelGene_1069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTCATTATTACCCA	NA	False	NA	NA	False	NA	NA	NA	55937131	55936917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_55936900_55937100
ES_00016250	chr13	-	1982	10	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	0	45025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	421.511038474149	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTGTTCAATACCTC	6006	False	NA	NA	False	NA	NA	NA	56283343	56176406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_56176447_56221434_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00016251	chr13	-	1891	10	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	0	31851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	395.444366395047	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAATAAAAGGCACATC	6096	False	NA	NA	False	NA	NA	NA	56283253	56189580	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_56189623_56221434_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00016253	chr13	-	898	6	NIC	ENSMUSG00000015937.16	novel	889	6	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	478.656703703186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTGGAAATGAGAATTGA	6006	False	NA	-7	True	AATAAA	-21	NA	56283343	56243362	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_56243455_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ES_00016255	chr13	-	2714	16	NIC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	1429	junction_15	1716.40976718524	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTGTGTGTGTGTGTG	5157	False	NA	-4	True	AATACA	-19	NA	58549924	58538951	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ES_00016256	chr13	-	676	8	FSM	ENSMUSG00000021546.19	ENSMUST00000177060.8	676	8	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	3273.89853731802	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGATCATCCTTGACCT	4760	False	NA	NA	False	NA	NA	NA	58550321	58543008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548155_58548232_58550206
ES_00016257	chr13	-	8005	26	FSM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	0	169	0	-169	multi-exon	FALSE	canonical	2	7	junction_25	6.92242731995071	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGAGTTGTAATGCTTG	1055	False	NA	NA	False	NA	NA	NA	59705125	59593724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59630330_59630419_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
ES_00016258	chr13	-	2879	18	FSM	ENSMUSG00000021557.16	ENSMUST00000109830.9	2879	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	6.94416685335233	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATTTGACTTTATGCA	1080	False	NA	NA	False	ATTAAA	-19	NA	59705100	59641213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59641685_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
ES_00016259	chr13	-	3689	11	FSM	ENSMUSG00000021556.13	ENSMUST00000095739.10	3689	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	200.252240936275	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-22	NA	59823594	59782809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59822774_59822911_59823540
ES_00016261	chr13	-	5559	27	NNC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	26.9885193649965	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCCACATTATTTTCT	NA	False	NA	-4	True	AATAAA	-21	NA	59970912	59919689	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969938_59970789
ES_00016262	chr13	-	5457	27	NIC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_26	23.0564011314883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCCACATTATTTTCT	NA	False	NA	-4	True	AATAAA	-21	NA	59970928	59919689	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970894
ES_00016265	chr13	-	3490	2	NNC	ENSMUSG00000035248.10	novel	2499	2	NA	NA	3	981	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGTTTTGTTTTTCTTTTT	NA	False	NA	3	True	ATTAAA	-25	NA	59970944	59966945	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_59969938_59970446
ES_00016266	chr13	-	1428	2	ISM	ENSMUSG00000035248.10	ENSMUST00000071703.6	5869	28	49	49140	16	-588	5prime_fragment	FALSE	canonical	3	25	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTGTTTATAGTATG	NA	False	NA	NA	False	AATAAA	-23	NA	59970912	59968514	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_59969925_59970894
ES_00016267	chr13	-	275	3	FSM	ENSMUSG00000114490.2	ENSMUST00000223864.2	511	3	178	58	178	-8	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGACAGTTCACATTGCT	NA	False	NA	NA	False	NA	NA	NA	60054755	60049104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_60049162_60050262_60050433_60054707
ES_00016268	chr13	-	718	1	FSM	ENSMUSG00000114023.2	ENSMUST00000223250.2	699	1	-3	-16	-3	16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTAAAATCATGATCTCA	NA	False	NA	NA	False	NA	NA	NA	61835797	61835079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_61835100_61835800
ES_00016269	chr13	-	2068	2	Antisense	novelGene_ENSMUSG00000113295.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAGAAGAGAATTGGCACA	NA	False	NA	NA	False	NA	NA	NA	61893549	61891398	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_61893365_61893447
ES_00016270	chr13	-	2903	5	NNC	ENSMUSG00000094942.8	novel	2310	4	NA	NA	-65	4878	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	28.6836190185269	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATGCTGGGTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	62531056	62511263	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62511338_62515687_62518166_62519376_62519438_62519623_62519751_62530893
ES_00016271	chr13	-	2212	3	FSM	ENSMUSG00000094942.8	ENSMUST00000107989.7	1677	3	0	-535	0	0	multi-exon	FALSE	canonical	3	23	junction_1	28	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62519750	62516141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62518166_62519376_62519438_62519623
ES_00016272	chr13	-	1612	4	FSM	ENSMUSG00000113623.2	ENSMUST00000221436.2	633	4	2	-981	2	433	multi-exon	FALSE	canonical	3	100	junction_1	23.5372045918796	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62564855	62549873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62551194_62555228_62555290_62555482_62555610_62564751
ES_00016273	chr13	-	1598	4	Fusion	ENSMUSG00000113623.2_ENSMUSG00000074865.12	novel	633	4	NA	NA	49	433	multi-exon	FALSE	canonical	3	64	junction_2	66.2335933563089	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62718964	62549873	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_62551194_62555228_62555290_62640621_62640749_62718874
ES_00016274	chr13	-	1587	5	NNC	ENSMUSG00000074865.12	novel	1714	5	NA	NA	35	77742	at_least_one_novel_splicesite	TRUE	non_canonical	3	40	junction_3	129.570444160696	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAACTCATTCACGTA	NA	False	NA	NA	False	ATTAAA	-13	NA	62718978	62549898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_62550196_62634805_62635805_62640180_62640241_62640621_62640749_62718874
ES_00016275	chr13	-	1284	1	Genic_Genomic	ENSMUSG00000074865.12	novel	NA	NA	NA	NA	5096	111	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCCGTTTCTTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	62701229	62699945	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_62699900_62701200
ES_00016276	chr13	-	1209	1	NIC	ENSMUSG00000074865.12	novel	943	3	NA	NA	2375	-2685	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGAACCTCCCTCGGTGT	NA	False	NA	NA	False	NA	NA	NA	62703950	62702741	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_62702700_62704000
ES_00016281	chr13	-	829	1	FSM	ENSMUSG00000113078.2	ENSMUST00000222940.2	2289	1	1526	-66	1526	66	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTAGCATACAGAAAAACT	4903	False	NA	NA	False	AATGAA	-24	NA	62883483	62882654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_62882700_62883500
ES_00016282	chr13	-	2612	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	36.5910735927038	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579476	63459948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63553910_63554070_63579263
ES_00016283	chr13	-	5734	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	-42	23	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	17.1357268913424	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGCATGCCTAATAGATA	NA	False	NA	NA	False	ATTAAA	-38	NA	64396498	64340335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
ES_00016284	chr13	-	749	7	NNC	ENSMUSG00000021482.11	novel	615	5	NA	NA	18	-4944	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	75.2964511484808	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGCAACAAGGGTCAAAG	NA	False	NA	NA	False	NA	NA	NA	64460506	64444584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_64444721_64444941_64444994_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
ES_00016285	chr13	-	743	7	NNC	ENSMUSG00000021482.11	novel	615	5	NA	NA	18	-4945	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	76.6755429644218	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTGCAACAAGGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	64460506	64444585	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_64444721_64444941_64444989_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
ES_00016287	chr13	-	529	1	FSM	ENSMUSG00000113753.2	ENSMUST00000220840.2	489	1	-64	24	-64	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTATTTCCAACTGTGG	NA	False	NA	NA	False	NA	NA	NA	64772638	64772109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_64772100_64772600
ES_00016288	chr13	-	3875	5	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	0	888	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	39.8834238750888	110	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAGAAGGAAAGAAGGAA	7281	False	NA	NA	False	NA	NA	NA	65496411	65483147	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65486136_65486639_65487225_65488362_65488424_65488791_65488919_65496297
ES_00016289	chr13	-	893	1	FSM	ENSMUSG00000113301.2	ENSMUST00000221922.2	132	1	23	-784	23	784	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACGTGCCTTTAATCCCA	NA	False	NA	NA	False	NA	NA	NA	65543929	65543036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_65543000_65543900
ES_00016290	chr13	-	1200	2	Intergenic	novelGene_1101	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTGTAGTTTAAACTGGT	NA	False	NA	NA	False	AGTAAA	-10	NA	65632673	65629701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65630754_65632525
ES_00016291	chr13	-	489	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6967	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	204	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTAGCATGCCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	65651574	65639608	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_65639775_65644415_65644605_65651440
ES_00016292	chr13	-	385	2	Intergenic	novelGene_1105	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTAGTTACATTCCA	NA	False	NA	NA	False	NA	NA	NA	65787425	65779975	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65780226_65787290
ES_00016293	chr13	-	3789	1	Intergenic	novelGene_1106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTGAGGTTGAAACTAA	7260	False	NA	NA	False	NA	NA	NA	65805829	65802040	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65802000_65805800
ES_00016294	chr13	-	658	4	Intergenic	novelGene_1108	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	6	junction_1	39.7324384686702	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAAGATGTCTACATT	NA	False	NA	NA	False	NA	NA	NA	65960863	65807742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65808114_65954300_65954362_65954561_65954689_65960764
ES_00016295	chr13	-	321	1	Intergenic	novelGene_1112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCACTGGTGCCAGATG	NA	False	NA	NA	False	NA	NA	NA	65896942	65896621	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65896600_65896900
ES_00016296	chr13	-	247	1	Intergenic	novelGene_1113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCACATTTGCTATTAAAC	NA	False	NA	NA	False	NA	NA	NA	65909020	65908773	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_65908800_65909000
ES_00016297	chr13	-	1401	1	FSM	ENSMUSG00000113712.2	ENSMUST00000222893.2	1289	1	-211	99	-211	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTAGAGAAACCTTACAA	NA	False	NA	NA	False	NA	NA	NA	65910538	65909137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_65909100_65910500
ES_00016298	chr13	-	309	2	Intergenic	novelGene_1116	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	168	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCACCATGCCTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	66044784	66004299	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_66004492_66044667
ES_00016299	chr13	-	545	1	FSM	ENSMUSG00000074841.3	ENSMUST00000091539.4	545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAATTGTTTGCATTTAT	NA	False	NA	NA	False	NA	NA	NA	66042573	66042028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66042000_66042600
ES_00016300	chr13	-	2621	4	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8363	48056	intron_retention	FALSE	non_canonical	0	0	junction_1	77.3792966855835	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGCAAAAGCAAGGCAATT	NA	False	NA	NA	False	NA	NA	NA	66138968	66076100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66076117_66124239_66126651_66126851_66126979_66138901
ES_00016301	chr13	-	214	2	Intergenic	novelGene_1122	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66248939	66243236	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_66243406_66248894
ES_00016302	chr13	-	600	5	Genic_Genomic	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7324	11768	multi-exon	FALSE	canonical	3	6	junction_2	23.6788407655442	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCCCCTGAAGGAGTTT	1870	False	NA	NA	False	NA	NA	NA	66439289	66417181	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr13_-_66417335_66417784_66417928_66431569_66431631_66431830_66431958_66439173
ES_00016304	chr13	-	570	1	Intergenic	novelGene_1125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAAGTTTCTTCCTCGGTT	NA	False	NA	NA	False	AATAAA	-31	NA	66517077	66516507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_66516500_66517100
ES_00016306	chr13	-	455	2	ISM	ENSMUSG00000094499.4	ENSMUST00000234850.2	3029	10	-6	29705	-6	-29470	5prime_fragment	FALSE	canonical	3	14	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATTAAATGGTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	66549938	66528682	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_66529024_66549824
ES_00016307	chr13	-	624	5	Intergenic	novelGene_1130	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	7.3824115301167	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACCTAGGCATCTGACC	NA	False	NA	NA	False	NA	NA	NA	66711806	66695302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_66695422_66696155_66696380_66700460_66700522_66700722_66700807_66711670
ES_00016308	chr13	-	1811	1	FSM	ENSMUSG00000114814.2	ENSMUST00000223830.2	1220	1	198	-789	198	789	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATGGGTTGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	66770771	66768960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66769000_66770800
ES_00016310	chr13	-	2385	7	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9891	354	intron_retention	FALSE	canonical	1	1	junction_4	18.5352516992771	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTGAGATTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	66846307	66830548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66834948_66835046_66836256_66836399_66841838_66841917_66846221
ES_00016311	chr13	-	217	1	FSM	ENSMUSG00000114423.2	ENSMUST00000224301.2	153	1	40	-104	40	104	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGCAATCTAGTGGGTG	836	False	NA	NA	False	NA	NA	NA	66904510	66904293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_66904300_66904500
ES_00016312	chr13	-	1468	4	NNC	ENSMUSG00000117784.2	novel	2241	5	NA	NA	-5539	-1090	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	7.84573486395988	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTTTTTTCTTCCA	NA	False	NA	NA	False	AATAAA	-19	NA	66968822	66958174	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66959251_66961546_66961719_66963182_66963325_66968744
ES_00016313	chr13	-	1521	5	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	0	22735	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	26.1856353751441	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAATAAAGTTTCTTCC	8594	False	NA	NA	False	AATAAA	-25	NA	67002935	66974979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_66975488_66976590_66977274_66977723_66977867_67002549_67002611_67002809
ES_00016314	chr13	-	397	3	FSM	ENSMUSG00000021519.12	ENSMUST00000173891.8	397	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	174.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTATGTATCAGCAACTA	NA	False	NA	NA	False	AATAAA	-18	NA	67064695	67055031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67055248_67062690_67062853_67064676
ES_00016315	chr13	-	1007	5	FSM	ENSMUSG00000021519.12	ENSMUST00000173407.8	1092	5	85	0	85	0	multi-exon	FALSE	canonical	3	11	junction_4	163.503822585284	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGAATGTGAAGAAGGT	842	False	NA	NA	False	NA	NA	NA	67080687	67065107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080457
ES_00016317	chr13	-	3886	7	FSM	ENSMUSG00000100235.9	ENSMUST00000186303.7	3886	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.63964143856288	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	1	True	AATAAA	-20	NA	67256613	67217462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67245856_67247112_67250106_67250200_67250761_67250846_67256512
ES_00016318	chr13	-	204	1	FSM	ENSMUSG00000074824.4	ENSMUST00000189620.2	5249	1	5057	-12	2822	12	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTCCAGCCCCCTGTAT	9842	False	NA	NA	False	NA	NA	NA	67259270	67259066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67259100_67259300
ES_00016319	chr13	-	2911	1	FSM	ENSMUSG00000055480.8	ENSMUST00000224648.2	4615	1	65	1639	-6	-1639	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGTGTTGAGTCTTTG	4290	False	NA	NA	False	NA	NA	NA	67417138	67414227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67414200_67417100
ES_00016320	chr13	-	3901	5	FSM	ENSMUSG00000057842.15	ENSMUST00000109735.9	3896	5	0	-5	0	5	multi-exon	FALSE	canonical	1	3	junction_2	1.87082869338697	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACAAAACTCAGTTAAAAT	3636	False	NA	NA	False	NA	NA	NA	67480611	67461056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67462974_67464361_67466042_67468335_67468432_67468891_67469019_67480530
ES_00016321	chr13	-	210	1	Intergenic	novelGene_1136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGTTTGGTTTGTAAT	504	False	NA	NA	False	NA	NA	NA	67499977	67499767	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_67499800_67500000
ES_00016322	chr13	-	3311	4	FSM	ENSMUSG00000055560.9	ENSMUST00000224113.2	646	4	115	-2780	115	25	multi-exon	FALSE	canonical	1	1	junction_3	17.3781471969828	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAAGACCAAGTGTAATT	NA	False	NA	21	True	NA	NA	NA	67569368	67553802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569339
ES_00016323	chr13	-	435	5	NIC	ENSMUSG00000069206.15	novel	733	3	NA	NA	7	-115	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	51.0704170729004	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATACTGGTTCACTA	9989	False	NA	NA	False	NA	NA	NA	67599692	67577548	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_67577603_67579568_67579665_67596939_67597036_67597468_67597596_67599630
ES_00016325	chr13	-	425	3	NNC	ENSMUSG00000048280.19	novel	609	3	NA	NA	-8	-171	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTCTGTCTTTTTCTT	NA	False	NA	NA	False	TATAAA	-17	NA	67831594	67821013	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_67821213_67821680_67821808_67831495
ES_00016326	chr13	-	347	1	FSM	ENSMUSG00000048280.19	ENSMUST00000223721.2	1253	1	769	137	741	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCAGTGGTTAAGATAT	159	False	NA	NA	False	NA	NA	NA	67830845	67830498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_67830500_67830800
ES_00016327	chr13	-	370	2	NNC	ENSMUSG00000071281.13	novel	3957	4	NA	NA	-849	47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCTTCCGTTATCCATC	NA	False	NA	NA	False	NA	NA	NA	67873294	67856260	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_67856580_67873243
ES_00016329	chr13	-	2668	2	FSM	ENSMUSG00000052981.7	ENSMUST00000065118.7	2674	2	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGTCTCGAGAATCAATC	NA	False	NA	3	True	AATAAA	-18	NA	69888002	69850950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_69852293_69886676
ES_00016330	chr13	-	358	1	FSM	ENSMUSG00000113980.2	ENSMUST00000221449.2	384	1	12	14	12	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCCAACTAGCAGGCTAC	NA	False	NA	NA	False	NA	NA	NA	70155721	70155363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_70155400_70155700
ES_00016331	chr13	-	735	1	FSM	ENSMUSG00000094989.2	ENSMUST00000075549.8	579	1	-26	-130	-26	130	mono-exon	FALSE	NA	NA	NA	NA	NA	873	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATTAAAGGTCAAAATCTA	NA	False	NA	NA	False	NA	NA	NA	72603485	72602750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_72602800_72603500
ES_00016332	chr13	-	3276	14	NNC	ENSMUSG00000034152.7	novel	4922	13	NA	NA	4	46997	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.516981298681	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCCTAACCAGGCACT	7177	False	NA	NA	False	AATAAA	-34	NA	74356824	74270609	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74270639_74320112_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74355941
ES_00016334	chr13	-	7046	4	Fusion	ENSMUSG00000112964.2_ENSMUSG00000069208.10	novel	1614	4	NA	NA	0	5427	multi-exon	FALSE	canonical	3	13	junction_3	14.0554457615387	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCCCTAAGGGTAACATT	NA	False	NA	NA	False	NA	NA	NA	74642111	74589963	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr13_-_74596679_74598074_74598136_74598354_74598482_74641968
ES_00016335	chr13	-	5153	5	NNC	ENSMUSG00000113019.2	novel	395	4	NA	NA	-389	4471	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	28.8574080610162	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGCTGTGATCACTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	74670969	74653245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472_74670559_74670660
ES_00016336	chr13	-	3710	3	NNC	ENSMUSG00000113204.2	novel	1512	2	NA	NA	20	3080	intron_retention	TRUE	canonical	0	0	junction_1	46.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGATGTCT	9977	False	NA	NA	False	NA	NA	NA	74758133	74724396	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_74724792_74753432_74755855_74757240
ES_00016337	chr13	-	206	1	Intergenic	novelGene_1142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGCAGGAAAGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	74789085	74788879	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_-_74788900_74789100
ES_00016339	chr13	-	2308	1	FSM	ENSMUSG00000113015.2	ENSMUST00000222599.2	943	1	-266	-1099	-266	1099	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGGCAGTGCATGCCTT	NA	False	NA	NA	False	AATAAA	-21	NA	74917246	74914938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_74914900_74917200
ES_00016340	chr13	-	3590	20	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_14	34.3358836872922	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283579	77191206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00016341	chr13	-	3701	21	NNC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	35	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_13	36.3862611434591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTCATAGTCTTTAG	NA	False	NA	-5	True	AATAAA	-19	NA	77283522	77191209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249203_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ES_00016342	chr13	-	743	2	FSM	ENSMUSG00000097793.2	ENSMUST00000181520.2	4608	2	0	3865	0	-3865	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCACTGCCCACCAAGCC	NA	False	NA	NA	False	TATAAA	-19	NA	81931868	81930756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_81931445_81931813
ES_00016343	chr13	-	606	1	FSM	ENSMUSG00000114338.2	ENSMUST00000225386.2	606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCCAATAAAGACTGTT	4967	False	NA	NA	False	NA	NA	NA	85122436	85121830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_85121800_85122400
ES_00016344	chr13	-	10740	9	ISM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	36917	-3	16379	3	3prime_fragment	FALSE	canonical	2	4	junction_8	17.1021745693347	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACTTGTCTGTTTATTT	NA	False	NA	2	True	AAGAAA	-26	NA	89853711	89803427	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89851036
ES_00016345	chr13	-	332	3	FSM	ENSMUSG00000021615.14	ENSMUST00000161396.2	332	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	78.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTTCCTCTTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	90237201	90210193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_90210304_90219659_90219809_90237128
ES_00016347	chr13	-	412	1	FSM	ENSMUSG00000113514.2	ENSMUST00000222962.2	713	1	569	-268	569	268	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAATTGAAGTACA	NA	False	NA	NA	False	NA	NA	NA	93557255	93556843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_93556800_93557300
ES_00016348	chr13	-	216	2	Antisense	novelGene_ENSMUSG00000114599.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1637	junction_1	0	61	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGAGGGATCGACAACT	7280	False	NA	NA	False	NA	NA	NA	97753352	97661174	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_97661320_97753281
ES_00016349	chr13	-	481	4	FSM	ENSMUSG00000021662.12	ENSMUST00000225269.2	783	4	51	251	51	-251	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGACGACAGCACAGG	NA	False	NA	NA	False	NA	NA	NA	98083384	98078960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98079093_98081023_98081207_98082156_98082249_98083310
ES_00016350	chr13	-	840	2	FSM	ENSMUSG00000021660.15	ENSMUST00000133461.2	839	2	0	-1	0	0	multi-exon	FALSE	canonical	3	7051	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98448023	98446404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98446710_98447488
ES_00016352	chr13	-	1161	4	FSM	ENSMUSG00000052485.8	ENSMUST00000064347.8	1161	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCCCATTTTTCTG	9052	False	NA	NA	False	AATAAA	-16	NA	98831342	98822742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_98823025_98824855_98824992_98828511_98829226_98831313
ES_00016354	chr13	-	1996	17	NNC	ENSMUSG00000021646.10	novel	2123	17	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	2	51	junction_3	69.7078725826574	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACATTCTAGGGTTGTTGA	696	False	NA	-8	True	AATAAA	-13	NA	100152120	100085042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100085465_100088663_100088750_100090643_100090759_100091220_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
ES_00016355	chr13	-	7599	39	NNC	ENSMUSG00000049658.14	novel	9921	39	NA	NA	17	-2300	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_24	12.4963152463773	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGATGAGACACTATAAAGC	6776	False	NA	NA	False	NA	NA	NA	100240561	100156803	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100156919_100160107_100160364_100161904_100162161_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233_100195454_100195996_100196179_100196801_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
ES_00016356	chr13	-	698	4	FSM	ENSMUSG00000021639.18	ENSMUST00000124644.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_1	15.542057635833	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAAAGAGCAATTGTC	NA	False	NA	NA	False	NA	NA	NA	100618157	100615698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100615763_100617047_100617156_100617511_100617600_100617719
ES_00016357	chr13	-	2724	9	NIC	ENSMUSG00000021638.13	novel	4052	9	NA	NA	-3	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_8	21.5638586528478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATAATGTGCTCATTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	100688971	100634278	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688923
ES_00016358	chr13	-	444	1	FSM	ENSMUSG00000114332.2	ENSMUST00000223825.2	631	1	533	-346	533	346	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTTTCTTTCTCTCTT	NA	False	NA	NA	False	AATAAA	-5	NA	100696007	100695563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100695600_100696000
ES_00016359	chr13	-	2715	18	NNC	ENSMUSG00000021635.15	novel	2745	18	NA	NA	14	47516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.1161971621259	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAATAGAG	NA	False	NA	NA	False	NA	NA	NA	100787541	100706155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100706178_100753671_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ES_00016360	chr13	-	2729	18	NNC	ENSMUSG00000021635.15	novel	2392	17	NA	NA	0	47516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.1161971621259	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAATAGAG	NA	False	NA	NA	False	NA	NA	NA	100787555	100706155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100706181_100753674_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ES_00016361	chr13	-	201	2	Antisense	novelGene_ENSMUSG00000065678.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTAGCATGGCTCTGGTTC	NA	False	NA	NA	False	NA	NA	NA	100802004	100717582	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr13_-_100717729_100801949
ES_00016362	chr13	-	1302	13	NNC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	0	16470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.242868188677	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACTCAAAAGTCCTTCAC	NA	False	NA	NA	False	NA	NA	NA	100867408	100822668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_100822703_100839819_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ES_00016363	chr13	-	1159	11	FSM	ENSMUSG00000069089.9	ENSMUST00000225990.2	1159	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	227.413741889095	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867408	100839817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ES_00016368	chr13	-	4088	29	NNC	ENSMUSG00000042590.18	novel	4147	30	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	148.801174527677	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	-6	True	ATTAAA	-19	NA	107061629	106930946	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025912_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520
ES_00016370	chr13	-	3266	28	NIC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	0	-91	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	167.672356709118	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTCAGCGTTATCCAC	7262	False	NA	NA	False	NA	NA	NA	113063906	113004479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr13_-_113004530_113005544_113005650_113005870_113006002_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
ES_00016377	chr13	-	3301	16	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-544	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.4326212157433	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCTTCGTCTCTGATGA	NA	False	NA	NA	False	AATAAA	-18	NA	119546032	119472062	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545875
ES_00016379	chr13	-	3498	8	NNC	ENSMUSG00000094870.9	novel	2966	8	NA	NA	-13	1	intron_retention	FALSE	canonical	2	8	junction_5	77.1267178884522	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	77	True	AGTAAA	-19	NA	120252287	120226721	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr13_-_120228563_120230241_120230373_120237302_120237526_120237620_120237986_120239968_120240057_120244307_120244453_120250395_120250498_120251684
ES_00016383	chr13	+	216	1	Intergenic	novelGene_1001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCGCTGTTTAGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	5742898	5743114	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_5742900_5743100
ES_00016385	chr13	+	203	1	Intergenic	novelGene_1015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCGGCCCACAGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	20149264	20149467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_20149300_20149500
ES_00016386	chr13	+	265	1	Intergenic	novelGene_1016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGGTTTTCCCTTATGCT	NA	False	NA	NA	False	NA	NA	NA	20178066	20178331	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_20178100_20178300
ES_00016387	chr13	+	223	1	Intergenic	novelGene_1017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGCATTCGATGAGCAT	NA	False	NA	NA	False	AAAACA	-30	NA	22105068	22105291	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_22105100_22105300
ES_00016388	chr13	+	257	1	Intergenic	novelGene_1023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAATGCGGGAGATGCCAC	NA	False	NA	NA	False	AAAAAG	-33	NA	28789529	28789786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_28789500_28789800
ES_00016389	chr13	+	204	1	Intergenic	novelGene_1027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTTTGTTTTTAATAG	NA	False	NA	NA	False	NA	NA	NA	32559181	32559385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_32559200_32559400
ES_00016390	chr13	+	281	1	Intergenic	novelGene_1030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAGATATTTCCATATTAA	NA	False	NA	NA	False	NA	NA	NA	33245083	33245364	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_33245100_33245400
ES_00016391	chr13	+	249	1	Intergenic	novelGene_1037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	43479512	43479761	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_43479500_43479800
ES_00016392	chr13	+	203	1	Intergenic	novelGene_1038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTGTCAGGGCACTTA	NA	False	NA	NA	False	NA	NA	NA	43636073	43636276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_43636100_43636300
ES_00016393	chr13	+	205	1	Intergenic	novelGene_1050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTCCACTTGTATAAT	NA	False	NA	NA	False	NA	NA	NA	51341986	51342191	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_51342000_51342200
ES_00016394	chr13	+	247	1	Intergenic	novelGene_1054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGACCATTTCCTCCCAC	NA	False	NA	NA	False	NA	NA	NA	53485314	53485561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_53485300_53485600
ES_00016395	chr13	+	254	1	Intergenic	novelGene_1060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTTTGTTTAGTAT	2862	False	NA	NA	False	NA	NA	NA	55293132	55293386	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_55293100_55293400
ES_00016396	chr13	+	203	1	Intergenic	novelGene_1071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAACCTCCCAAACTG	NA	False	NA	NA	False	NA	NA	NA	58319777	58319980	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_58319800_58320000
ES_00016397	chr13	+	208	1	Intergenic	novelGene_1072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTTTATCGACCAGTTT	NA	False	NA	NA	False	NA	NA	NA	58415476	58415684	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_58415500_58415700
ES_00016398	chr13	+	374	1	Intergenic	novelGene_1090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTAGCACGTCTGCCGAC	NA	False	NA	NA	False	NA	NA	NA	62704139	62704513	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_62704100_62704500
ES_00016399	chr13	+	217	1	Intergenic	novelGene_1092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAAAACTCTTATGCAC	NA	False	NA	NA	False	NA	NA	NA	63516703	63516920	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_63516700_63516900
ES_00016400	chr13	+	269	1	Intergenic	novelGene_1100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCCACTGGGGGATCCAT	1133	False	NA	NA	False	NA	NA	NA	65606324	65606593	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65606300_65606600
ES_00016401	chr13	+	698	1	Intergenic	novelGene_1109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACTTTTCCACATTCAT	NA	False	NA	NA	False	NA	NA	NA	65836634	65837332	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65836600_65837300
ES_00016402	chr13	+	419	1	Intergenic	novelGene_1111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGTGAAGTGGATCCAC	NA	False	NA	NA	False	NA	NA	NA	65895345	65895764	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_65895300_65895800
ES_00016403	chr13	+	5930	1	Intergenic	novelGene_1126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACATCTACCTCAT	2364	False	NA	NA	False	NA	NA	NA	66522015	66527945	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_66522000_66527900
ES_00016404	chr13	+	201	1	Intergenic	novelGene_1139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATCTCAGAATCTATCTC	2625	False	NA	NA	False	AAAAAG	-1	NA	70652825	70653026	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_70652800_70653000
ES_00016405	chr13	+	290	1	Intergenic	novelGene_1153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	85172130	85172420	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_85172100_85172400
ES_00016406	chr13	+	240	1	Intergenic	novelGene_1162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAAATATATACCACTA	NA	False	NA	NA	False	NA	NA	NA	92546266	92546506	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_92546300_92546500
ES_00016407	chr13	+	291	1	Intergenic	novelGene_1171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCTCTCTTATAATAGA	NA	False	NA	NA	False	NA	NA	NA	97510933	97511224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_97510900_97511200
ES_00016408	chr13	+	204	1	Intergenic	novelGene_1176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGTATTTATGGGATCG	NA	False	NA	NA	False	NA	NA	NA	99696758	99696962	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_99696800_99697000
ES_00016409	chr13	+	366	1	Intergenic	novelGene_1178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAGATAGAATACTGATA	NA	False	NA	NA	False	NA	NA	NA	100870500	100870866	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr13_+_100870500_100870900
ES_00016413	chr14	+	1540	6	FSM	ENSMUSG00000058317.13	ENSMUST00000150727.8	1523	6	-17	0	-17	0	multi-exon	FALSE	canonical	3	139	junction_1	30.1569229199532	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTGTACCAGCCTTT	NA	False	NA	7	True	AATAAA	-19	NA	3575902	3896119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_3576112_3581246_3581431_3598151_3598203_3839264_3839398_3882697_3882846_3895304
ES_00016415	chr14	+	1626	7	NNC	ENSMUSG00000058317.13	novel	1523	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	81.7407826947819	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTGTACCAGCCTTT	NA	False	NA	7	True	AATAAA	-19	NA	3575971	3896119	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_3576112_3576313_3576469_3581246_3581431_3598151_3598203_3839264_3839398_3882697_3882846_3895304
ES_00016418	chr14	+	1200	4	FSM	ENSMUSG00000058317.13	ENSMUST00000176555.8	1200	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	86.3185315496556	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTACCAGCCTTTGC	NA	False	NA	9	True	AATAAA	-21	NA	3581246	3896121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_3581431_3598151_3598203_3882697_3882846_3895304
ES_00016420	chr14	+	746	1	FSM	ENSMUSG00000114529.2	ENSMUST00000224515.2	1325	1	-10	589	-10	-589	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGAGTGAAGCTGCACAG	NA	False	NA	NA	False	NA	NA	NA	3924553	3925299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_3924600_3925300
ES_00016421	chr14	+	1410	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	-2	0	-2	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137834	4186974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ES_00016422	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	2540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	4198628	4201873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
ES_00016423	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
ES_00016424	chr14	+	802	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198725	4200736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
ES_00016425	chr14	+	4669	8	FSM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	-12	6	-12	-6	multi-exon	FALSE	canonical	3	94	junction_5	14.9229312653721	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGAGTTTATTGTTTTGT	NA	False	NA	22	True	TATAAA	-12	NA	4230556	4265636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4230886_4247442_4247710_4249639_4249729_4252901_4253047_4254202_4254823_4257731_4257918_4261566_4261778_4262814
ES_00016426	chr14	+	3759	5	FSM	ENSMUSG00000021775.12	ENSMUST00000143308.2	1680	5	0	-2079	0	2079	multi-exon	FALSE	canonical	3	105	junction_4	13.5462171841441	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTCAGAGATCCTCAT	NA	False	NA	NA	False	NA	NA	NA	4230664	4257239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4230886_4247442_4247710_4249639_4249729_4252901_4253047_4254202
ES_00016428	chr14	+	3460	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	9	-35	9	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATCAGCTGATTCTG	NA	False	NA	NA	False	AATAAA	-28	NA	6226440	6231111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_6226474_6226964_6227973_6228692
ES_00016429	chr14	+	621	3	Intergenic	novelGene_1198	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	7.5	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGTCTTGGTTCCTTC	6911	False	NA	NA	False	NA	NA	NA	8013507	8018482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_8013751_8017395_8017543_8018251
ES_00016430	chr14	+	593	1	FSM	ENSMUSG00000114737.2	ENSMUST00000224271.2	1284	1	204	487	204	-487	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGACCAGCTGGCTGACC	4365	False	NA	NA	False	NA	NA	NA	8021022	8021615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8021000_8021600
ES_00016431	chr14	+	1052	3	FSM	ENSMUSG00000114883.2	ENSMUST00000224991.2	1104	3	52	0	52	0	multi-exon	FALSE	canonical	1	2	junction_1	0.5	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTTTCTTGGTATTTTT	4334	False	NA	NA	False	AATAAA	-16	NA	8122550	8141759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8122621_8140289_8140478_8140965
ES_00016432	chr14	+	4479	3	FSM	ENSMUSG00000021737.5	ENSMUST00000127228.2	810	3	-3669	0	-37	0	multi-exon	FALSE	canonical	3	1215	junction_1	31.5	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCTCTATGAATGCC	NA	False	NA	NA	False	NA	NA	NA	8348741	8353568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8352939_8353159_8353380_8353506
ES_00016433	chr14	+	1392	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	25	True	AATAAA	-27	NA	8348773	8357589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ES_00016435	chr14	+	1394	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	-459	2	116	0	multi-exon	TRUE	canonical	3	370	junction_1	118.776758531907	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508026	8520749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00016436	chr14	+	884	8	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	208	junction_2	184.198207352397	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508509	8520749	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00016437	chr14	+	1063	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	272.312292001298	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508529	8520749	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00016438	chr14	+	970	9	FSM	ENSMUSG00000053453.10	ENSMUST00000225401.2	951	9	-19	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508528	8520749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00016439	chr14	+	1140	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508597	8520749	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00016440	chr14	+	1011	8	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	221.462578033824	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8512134	8520749	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00016442	chr14	+	2630	1	FSM	ENSMUSG00000053453.10	ENSMUST00000224764.2	5264	1	2703	-69	1628	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTAGAGGCTCTGGGCA	NA	False	NA	NA	False	NA	NA	NA	8516767	8519397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8516800_8519400
ES_00016443	chr14	+	1285	1	Genic_Genomic	ENSMUSG00000097148.3	novel	NA	NA	NA	NA	74718	11	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAATTGACTTTTGTATA	NA	False	NA	NA	False	AATAAA	-42	NA	11187764	11189049	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_+_11187800_11189000
ES_00016444	chr14	+	1228	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-183	-709	-183	709	mono-exon	FALSE	NA	NA	NA	NA	NA	679	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACAGTGTTTGTGACTA	NA	False	NA	NA	False	NA	NA	NA	13669254	13670482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_13669300_13670500
ES_00016445	chr14	+	2681	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTGCTTCCTTTTGTTC	NA	False	NA	14	True	AATAAA	-14	NA	13803532	14038581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
ES_00016446	chr14	+	1273	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	-10	250	-10	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAATGCTGAAGTGACAGC	NA	False	NA	-13	True	CATAAA	-1	NA	14296737	14303527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ES_00016447	chr14	+	620	2	FSM	ENSMUSG00000021748.10	ENSMUST00000225747.2	620	2	0	0	0	0	multi-exon	FALSE	canonical	3	2485	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAATGCTGAAGTGACAGC	NA	False	NA	-13	True	CATAAA	-1	NA	14302676	14303527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_14303061_14303291
ES_00016448	chr14	+	984	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	8	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	AATAAA	-3	NA	15424802	15433238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
ES_00016449	chr14	+	242	2	Intergenic	novelGene_1209	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	32	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTTTCATTCTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	15866026	15869449	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_15866118_15869298
ES_00016450	chr14	+	366	3	NNC	ENSMUSG00000094634.9	novel	1955	7	NA	NA	-16	-16405	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_2	3	51	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTTTCATTCTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	16361091	16366073	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_16361193_16362573_16362688_16365922
ES_00016451	chr14	+	1888	6	FSM	ENSMUSG00000096629.8	ENSMUST00000112758.10	1813	6	-75	0	-75	0	multi-exon	FALSE	canonical	0	0	junction_1	9.97997995989972	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	16661739	16679217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_16661872_16671607_16671743_16672474_16672638_16673586_16673719_16674393_16674577_16678074
ES_00016452	chr14	+	1448	3	ISM	ENSMUSG00000094370.8	ENSMUST00000177556.8	1955	7	17619	0	17619	0	3prime_fragment	FALSE	canonical	0	0	junction_2	9	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	16745814	16751437	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_16745937_16746611_16746795_16750294
ES_00016456	chr14	+	4105	19	FSM	ENSMUSG00000021806.5	ENSMUST00000224263.2	4105	19	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_15	511.410048448719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	7020	False	NA	24	True	AATAAA	-16	NA	19818304	19861855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19856579_19856679_19857994_19858153_19860047_19860172_19861021_19861135_19861253
ES_00016461	chr14	+	1946	8	ISM	ENSMUSG00000039599.17	ENSMUST00000051915.7	1981	12	-35	7056	3	146	5prime_fragment	FALSE	canonical	3	59	junction_5	87.5522001728229	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTAATTGGGCATCATA	NA	False	NA	NA	False	NA	NA	NA	20398254	20426501	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577
ES_00016464	chr14	+	2370	14	FSM	ENSMUSG00000039599.17	ENSMUST00000090499.13	2370	14	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	83.3254828649349	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTTATTACATTTTAGA	NA	False	NA	11	True	AATAAA	-20	NA	20398289	20433559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
ES_00016468	chr14	+	2520	15	NNC	ENSMUSG00000039599.17	novel	2370	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	91.8264778852828	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTTATTACATTTTAGA	NA	False	NA	11	True	AATAAA	-20	NA	20398336	20433559	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_20398463_20401379_20401485_20402771_20402908_20404839_20405037_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
ES_00016477	chr14	+	608	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	8	0	8	0	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753081	20754493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20753266_20753357_20753477_20754188
ES_00016478	chr14	+	591	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	-13	0	-13	0	multi-exon	FALSE	canonical	3	132	junction_1	962	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753112	20754493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20753266_20753343_20753477_20754188
ES_00016485	chr14	+	1788	11	FSM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	-6	0	-6	0	multi-exon	FALSE	canonical	3	304	junction_9	34.7499640287584	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTCTGTCTTGCTTG	NA	False	NA	16	True	AATAAA	-19	NA	21102635	21498637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ES_00016486	chr14	+	1829	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	-11	0	-11	0	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGATTTTTTTTCTGTC	NA	False	NA	9	True	AATAAA	-12	NA	21126208	21498630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ES_00016488	chr14	+	7253	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	37.2808177887771	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTTTGATCTTCATTTT	NA	False	NA	11	True	AATAAA	-21	NA	21531512	21722544	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ES_00016490	chr14	+	7654	17	FSM	ENSMUSG00000021767.20	ENSMUST00000069648.14	7649	17	-7	2	-7	-2	multi-exon	FALSE	canonical	3	3	junction_1	58.5543284053365	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTTTGATCTTCATTTT	NA	False	NA	11	True	AATAAA	-21	NA	21549845	21722544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21550029_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675284_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ES_00016493	chr14	+	6981	6	FSM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	17	-5424	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.55248303539968	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTTGTTATAACCCTT	2631	False	NA	14	True	AATAAA	-18	NA	21800615	21848794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
ES_00016500	chr14	+	587	7	FSM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	-49	-13	0	0	multi-exon	FALSE	canonical	3	18	junction_5	5419.3877396088	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCTCTGCTGCTTAT	NA	False	NA	17	True	AATAAA	-16	NA	24540748	24545926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24544138_24545497_24545518_24545842
ES_00016502	chr14	+	519	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540785	24545913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ES_00016503	chr14	+	4059	3	FSM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1373	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCTCTGCTGCTTAT	NA	False	NA	17	True	AATAAA	-16	NA	24540785	24545926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_24540827_24541817_24541884_24541974
ES_00016504	chr14	+	1613	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTGGGACTGGAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	24540785	24547027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
ES_00016505	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	False	NA	-18	True	NA	NA	NA	24540834	24545891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ES_00016519	chr14	+	4481	20	FSM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	-66	2223	-49	1516	multi-exon	TRUE	canonical	3	24	junction_11	139.009495679959	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTGTGTGTATTTTA	NA	False	NA	NA	False	NA	NA	NA	26300666	26353254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_26301018_26313387_26313427_26313549_26313593_26320770_26320884_26321598_26321680_26324202_26324309_26325828_26325909_26327030_26327094_26328059_26328116_26329244_26329368_26329690_26329787_26333121_26333217_26337745_26337812_26338048_26338114_26340469_26340560_26347860_26347915_26348019_26348130_26348473_26348577_26349826_26349902_26350582
ES_00016526	chr14	+	3829	14	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	17.0588955433745	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	26836807	27125868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_26836881_26837154_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ES_00016527	chr14	+	4093	13	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	13.9363633069112	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	26836817	27125868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ES_00016529	chr14	+	3647	10	FSM	ENSMUSG00000021895.11	ENSMUST00000224981.2	3618	10	-29	0	-29	0	multi-exon	FALSE	canonical	3	20	junction_1	14.3716112484489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	27057993	27125868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_27058227_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ES_00016532	chr14	+	4605	17	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	4	14389	4	2950	5prime_fragment	FALSE	canonical	3	136	junction_16	41.1035278291292	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTATTTTGCTTTATT	8932	False	NA	NA	False	AATAAA	-29	NA	27150794	27191123	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462
ES_00016534	chr14	+	3038	4	FSM	ENSMUSG00000040651.10	ENSMUST00000225139.2	3038	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	126.720164141308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTCGGGACTTTGATTC	NA	False	NA	16	True	AATAAA	-20	NA	27199126	27205512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_27199178_27201585_27201765_27201880_27202049_27202872
ES_00016535	chr14	+	2420	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	0	1407	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGTTTGTTTGTTTGTT	2394	False	NA	NA	False	AATAAA	-26	NA	27344452	27377166	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_27344572_27374643_27375441_27375662
ES_00016540	chr14	+	4084	1	FSM	ENSMUSG00000015971.6	ENSMUST00000225368.2	3998	1	-114	28	-114	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGACCTTGAACTCAGA	NA	False	NA	NA	False	NA	NA	NA	29713712	29717796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_29713700_29717800
ES_00016547	chr14	+	2065	15	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	0	5223	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	557.507266356965	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGACAAAAATCAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	30271167	30301900	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293_30295569_30301869
ES_00016548	chr14	+	2438	11	FSM	ENSMUSG00000021957.8	ENSMUST00000223633.2	2438	11	0	0	0	0	multi-exon	FALSE	canonical	3	1855	junction_1	165.575994636904	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30281646	30295581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ES_00016551	chr14	+	4672	22	NIC	ENSMUSG00000006527.17	novel	7837	21	NA	NA	22	1140	combination_of_known_splicesites	TRUE	canonical	3	21	junction_1	23.7565124142027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAATTGTGAATTTTTT	NA	False	NA	NA	False	AATATA	-18	NA	30437593	30541443	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30437833_30460495_30460588_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
ES_00016552	chr14	+	3299	21	FSM	ENSMUSG00000006527.17	ENSMUST00000228006.2	3299	21	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	22.2285852001426	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAGTGGCTCTAGGGTTT	NA	False	NA	27	True	ATTAAA	-19	NA	30438447	30540303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30438546_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
ES_00016555	chr14	+	4116	14	FSM	ENSMUSG00000021918.11	ENSMUST00000226551.2	4098	14	-18	0	-18	0	multi-exon	FALSE	canonical	3	11	junction_7	14.1684707054141	2933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTGTGTGTATGGTGT	NA	False	NA	24	True	AGTAAA	-15	NA	30673315	30710775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
ES_00016556	chr14	+	1252	5	FSM	ENSMUSG00000021918.11	ENSMUST00000226833.2	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	6.25999201277446	3146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGCTCAGTGATTAAG	NA	False	NA	NA	False	NA	NA	NA	30673434	30681535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097
ES_00016558	chr14	+	2018	10	FSM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_1	32.2321823686655	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	3576	False	NA	9	True	AATAAA	-20	NA	30723406	30733948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ES_00016559	chr14	+	1669	10	NNC	ENSMUSG00000021916.17	novel	2018	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	35.7536150291732	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	3805	False	NA	9	True	AATAAA	-20	NA	30723635	30733948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_30723835_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ES_00016568	chr14	+	7615	29	NIC	ENSMUSG00000042323.18	novel	7907	31	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	51.619042127921	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8252	False	NA	14	True	AATAAA	-21	NA	30741131	30843549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30744676_30744817_30747457_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30838969_30839041_30839156_30839374_30840685
ES_00016569	chr14	+	8042	33	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	61.429003418072	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8254	False	NA	14	True	AATAAA	-21	NA	30741133	30843549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30745023_30745128_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30778192_30778238_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30832371_30832537_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ES_00016582	chr14	+	3655	22	NNC	ENSMUSG00000021893.15	novel	3648	21	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_2	88.9704529414043	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	NA	False	NA	15	True	AATAAA	-20	NA	31058646	31093941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_31058941_31061995_31062101_31062457_31062521_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
ES_00016583	chr14	+	4662	20	FSM	ENSMUSG00000021893.15	ENSMUST00000152182.2	4662	20	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_12	56.8136868531731	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	NA	False	NA	15	True	AATAAA	-20	NA	31058663	31093941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31083203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658
ES_00016584	chr14	+	3686	21	NNC	ENSMUSG00000021893.15	novel	3648	21	NA	NA	0	109	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	55.8950802844043	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCCACATGAGCTTACTA	NA	False	NA	NA	False	AATAAA	-27	NA	31058663	31094052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_31058941_31061995_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
ES_00016591	chr14	+	2376	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTTAATGTTTCAG	NA	False	NA	20	True	AATACA	-19	NA	31807369	31825159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
ES_00016598	chr14	+	3805	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-9	-7	combination_of_known_junctions	FALSE	canonical	1	134	junction_15	101.735663996062	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAACTCCCATGCCACT	NA	False	NA	8	True	AATAAA	-21	NA	31923896	32019170	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ES_00016600	chr14	+	3768	25	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-67	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	114.261570955515	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043908	32070108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462_32069787_32069808
ES_00016601	chr14	+	3769	25	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	114.261570955515	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043908	32070108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462_32069787_32069807
ES_00016602	chr14	+	3668	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-37	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	115.755707172092	1351	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGGCCTCCTTTCCT	NA	False	NA	11	True	AATAAA	-17	NA	32043938	32070107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_32043983_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
ES_00016603	chr14	+	3723	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043975	32070108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
ES_00016604	chr14	+	8062	21	FSM	ENSMUSG00000054051.8	ENSMUST00000066807.8	8423	21	-22	383	-22	-383	multi-exon	FALSE	canonical	2	7	junction_11	30.0559478306707	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTCTGAAAACCCACGTG	NA	False	NA	NA	False	AGTAAA	-5	NA	32235455	32302564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_32235557_32238903_32239336_32240899_32241021_32242904_32243017_32248105_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ES_00016608	chr14	+	291	3	FSM	ENSMUSG00000063506.15	ENSMUST00000140166.2	437	3	146	0	67	0	multi-exon	FALSE	canonical	3	15	junction_1	0.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGGCCACAGATAGAGGATC	NA	False	NA	NA	False	NA	NA	NA	33084399	33086433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_33084533_33085232_33085307_33086349
ES_00016622	chr14	+	1760	5	FSM	ENSMUSG00000091110.2	ENSMUST00000172412.2	1760	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	8.31790237980706	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAATATAAAAGCTGGT	NA	False	NA	NA	False	AATAAA	-11	NA	41000761	41010772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_41000918_41001646_41001810_41002809_41002942_41003619_41003802_41009645
ES_00016628	chr14	+	2230	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4470	360	intron_retention	FALSE	canonical	3	21	junction_4	63.0672040146241	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATGTATGCTTCTGCTT	NA	False	NA	NA	False	AATAAA	-39	NA	41761481	41826138	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ES_00016629	chr14	+	1576	5	FSM	ENSMUSG00000052334.12	ENSMUST00000064162.11	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	25.043711785596	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41765951	41825778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ES_00016632	chr14	+	469	1	FSM	ENSMUSG00000114938.2	ENSMUST00000224774.2	233	1	-237	1	-237	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTGGGAGCCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	42365191	42365660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_42365200_42365700
ES_00016636	chr14	+	1684	5	FSM	ENSMUSG00000096446.2	ENSMUST00000168165.2	1761	5	46	31	46	-31	multi-exon	TRUE	canonical	1	2	junction_2	8.52936105461599	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTCTTTCAGGAAATAA	NA	False	NA	NA	False	AATATA	-13	NA	42958103	42972616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_42958214_42958941_42959105_42966542_42966675_42967358_42967541_42971519
ES_00016637	chr14	+	1406	5	FSM	ENSMUSG00000094151.2	ENSMUST00000168619.2	1761	5	45	310	45	-310	multi-exon	FALSE	canonical	2	9	junction_1	7.10633520177595	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCTGTGGTATCACCCT	NA	False	NA	NA	False	AATAAA	-41	NA	43037368	43045135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_43037480_43038207_43038371_43039360_43039493_43040175_43040358_43044317
ES_00016640	chr14	+	2008	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3311	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	21.2779228309532	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGCTCTAGAAAACA	NA	False	NA	NA	False	AATAAA	-18	NA	43129181	43163468	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_43129300_43132375_43132821_43157302_43157435_43158114_43158297_43162337
ES_00016642	chr14	+	976	2	FSM	ENSMUSG00000115483.2	ENSMUST00000228840.2	1188	2	0	212	0	-212	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACTTTGAAGTGAAGG	NA	False	NA	NA	False	ATTAAA	-22	NA	43132492	43146863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_43132821_43146215
ES_00016643	chr14	+	1240	3	NIC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	4	-340	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	29.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTCTTCACTCTTAAGA	NA	False	NA	NA	False	AATAAA	-11	NA	43132496	43163121	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_43132821_43157302_43157435_43162337
ES_00016647	chr14	+	2070	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73715	22	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_5	48.8128454154336	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCAGCTATGGTATCAC	NA	False	NA	NA	False	AATAAA	-37	NA	43169955	43251503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_43170061_43170454_43170526_43173084_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
ES_00016656	chr14	+	1209	6	FSM	ENSMUSG00000021832.9	ENSMUST00000226739.2	680	6	-529	0	-529	0	multi-exon	FALSE	canonical	3	1685	junction_2	50.2808114492994	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTGTACTGAAGCAGGT	3844	False	NA	NA	False	NA	NA	NA	45577381	45584254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200
ES_00016659	chr14	+	4126	8	ISM	ENSMUSG00000053205.10	ENSMUST00000226303.2	1730	12	7734	-2579	7714	-3	3prime_fragment	FALSE	canonical	3	78	junction_3	71.6200291219472	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTACTTGCAATGATTGAG	NA	False	NA	-8	True	ATTAAA	-45	NA	45596412	45614337	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
ES_00016665	chr14	+	368	1	FSM	ENSMUSG00000086746.3	ENSMUST00000228667.2	1726	1	261	1097	261	-1097	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGACGTCTGAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	46625270	46625638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_46625300_46625600
ES_00016667	chr14	+	671	7	NIC	ENSMUSG00000037628.11	novel	634	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	99.3955342166952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	False	NA	2	True	AATAAA	-17	NA	46998011	47008977	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
ES_00016668	chr14	+	715	8	NIC	ENSMUSG00000037628.11	novel	917	8	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	194	junction_1	23.9395497204172	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAAGTTCTCCAGCATA	NA	False	NA	1	True	AATAAA	-16	NA	46998052	47008976	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ES_00016674	chr14	+	4514	3	FSM	ENSMUSG00000021840.18	ENSMUST00000164235.3	4531	3	17	0	17	0	multi-exon	FALSE	canonical	3	218	junction_1	13.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCTGTTTGCATGTGAC	NA	False	NA	11	True	AATAAA	-16	NA	47546023	47560661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47546046_47547871_47548571_47556868
ES_00016677	chr14	+	1005	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	2	291	2	3	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	4	True	AATAAA	-17	NA	47611347	47623254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ES_00016678	chr14	+	1118	6	FSM	ENSMUSG00000050335.18	ENSMUST00000142734.8	1419	6	-65	366	-65	0	multi-exon	FALSE	canonical	3	33	junction_1	23.7941169199447	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCCATCGCTTTGGGG	NA	False	NA	1	True	AATAAA	-14	NA	47611204	47623251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47611410_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ES_00016679	chr14	+	2974	2	FSM	ENSMUSG00000037536.15	ENSMUST00000043112.9	2937	2	-37	0	-37	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGAGGTCTGGTCTTAA	NA	False	NA	6	True	AATAAA	-14	NA	47709980	47769411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47710175_47766631
ES_00016682	chr14	+	2993	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710075	47769415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47710175_47763661_47763772_47766631
ES_00016685	chr14	+	4571	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-230	0	combination_of_known_junctions	FALSE	canonical	3	405	junction_36	132.185085310088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886537	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016686	chr14	+	7034	39	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	16	-486	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	159.488430792916	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCTCTGCCTGGGAGGA	NA	False	NA	NA	False	NA	NA	NA	47886788	47976865	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016687	chr14	+	4480	41	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_28	223.472923415791	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCACTCTGATTGTCGTT	NA	False	NA	22	True	AATAAA	-22	NA	47886789	47974019	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47886897_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944735_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016688	chr14	+	4330	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	329	junction_35	142.357057734826	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCACTCTGATTGTCGT	NA	False	NA	21	True	AATAAA	-21	NA	47886767	47974018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016689	chr14	+	4424	41	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	24	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_40	219.460725415734	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886796	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971724_47973556
ES_00016690	chr14	+	4260	39	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	354	junction_31	131.105569523613	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACTCTGATTGTCGTTG	NA	False	NA	23	True	AATAAA	-23	NA	47886767	47974020	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016691	chr14	+	7247	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	24	-486	combination_of_known_junctions	FALSE	canonical	3	145	junction_37	170.363095695635	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCTCTGCCTGGGAGGA	NA	False	NA	NA	False	NA	NA	NA	47886796	47976865	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
ES_00016692	chr14	+	4165	39	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	168.59969349972	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886824	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016697	chr14	+	3984	40	FSM	ENSMUSG00000021843.18	ENSMUST00000190182.7	3984	40	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_36	179.666053725448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTTTAGTTTTATAATA	2384	False	NA	108	True	AAAAAG	-20	NA	47901243	47973748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
ES_00016701	chr14	+	3761	37	FSM	ENSMUSG00000021843.18	ENSMUST00000189101.7	3761	37	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_22	143.1073692575	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTTAGTTTTATAATAAA	2384	False	NA	NA	False	AAAAAG	-22	NA	47901243	47973750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016702	chr14	+	4108	38	NNC	ENSMUSG00000021843.18	novel	3846	38	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_25	180.315821466523	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	2386	False	NA	17	True	AATAAA	-17	NA	47901245	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944735_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00016710	chr14	+	5497	16	FSM	ENSMUSG00000036339.19	ENSMUST00000111735.10	5485	16	-12	0	-12	0	multi-exon	FALSE	canonical	3	23	junction_12	6.92306932573182	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACGAATCCTAT	NA	False	NA	NA	False	AAGAAA	-27	NA	48683826	48752913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_48684061_48688599_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748_48733921_48737463_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
ES_00016712	chr14	+	6320	8	FSM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	0	1	0	-1	multi-exon	FALSE	canonical	3	109	junction_2	12.7487494384703	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATAAATTTGTGACATA	NA	False	NA	NA	False	NA	NA	NA	49303951	49328335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ES_00016713	chr14	+	5811	9	FSM	ENSMUSG00000036291.7	ENSMUST00000227410.2	2544	9	246	-3513	235	-1	multi-exon	FALSE	canonical	3	29	junction_2	33.1200467994838	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATAAATTTGTGACATA	NA	False	NA	NA	False	NA	NA	NA	49304233	49328335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_49304322_49311005_49311200_49311426_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ES_00016716	chr14	+	517	1	FSM	ENSMUSG00000078125.3	ENSMUST00000080330.6	483	1	-16	-18	-16	18	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACCCGGACTGCAAAAAA	NA	False	NA	NA	False	AAAAAG	-7	NA	51006688	51007205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51006700_51007200
ES_00016717	chr14	+	267	2	Antisense	novelGene_ENSMUSG00000092837.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	140	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCGCCCACTTTCAGGAT	NA	False	NA	NA	False	NA	NA	NA	51044928	51045216	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_51045015_51045035
ES_00016720	chr14	+	2194	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	-21	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ES_00016725	chr14	+	1694	2	FSM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	3	816	3	-816	multi-exon	FALSE	canonical	2	3	junction_1	0	702	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGGAGTTATCACAGAAA	2387	False	NA	NA	False	NA	NA	NA	51107835	51115644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51108014_51114128
ES_00016726	chr14	+	1247	4	FSM	ENSMUSG00000035960.15	ENSMUST00000154288.3	935	4	165	-477	-142	0	multi-exon	FALSE	canonical	3	1054	junction_2	68.6310587286997	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	354	False	NA	14	True	AATAAA	-15	NA	51162599	51164596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51162782_51162973_51163162_51163617_51163811_51163912
ES_00016727	chr14	+	1253	5	FSM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	716	junction_1	194.901898400195	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	165	False	NA	14	True	AATAAA	-15	NA	51162410	51164596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ES_00016735	chr14	+	1526	12	FSM	ENSMUSG00000004561.15	ENSMUST00000163603.8	1513	12	-13	0	0	0	multi-exon	FALSE	canonical	3	48	junction_6	39.3664706097011	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGGAAGAGAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	52122332	52129250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ES_00016752	chr14	+	2414	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	-8	0	-8	0	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACTGTTTAATATTGAT	NA	False	NA	16	True	AATAAA	-23	NA	54496680	54506626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
ES_00016754	chr14	+	1438	3	FSM	ENSMUSG00000000959.8	ENSMUST00000198107.2	1438	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	34.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAATGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	54598297	54601952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54598375_54598778_54598926_54600738
ES_00016755	chr14	+	2545	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	-7	0	0	0	multi-exon	TRUE	canonical	3	499	junction_4	29.1475598792348	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	False	NA	NA	False	AATAAA	-21	NA	54598290	54607130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ES_00016757	chr14	+	577	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	-114	0	-93	0	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664272	54667206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
ES_00016758	chr14	+	377	3	FSM	ENSMUSG00000010406.13	ENSMUST00000200217.2	363	3	-14	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	137.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGAGGTTAGTGCTAT	NA	False	NA	NA	False	NA	NA	NA	54664365	54664894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54664418_54664490_54664549_54664627
ES_00016764	chr14	+	1863	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	-20	0	-20	0	multi-exon	FALSE	canonical	3	385	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923652	54928198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54924578_54927260
ES_00016772	chr14	+	2614	6	FSM	ENSMUSG00000022194.16	ENSMUST00000116476.9	1761	6	-82	-771	-82	758	multi-exon	FALSE	canonical	3	2245	junction_1	149.688209288507	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTTGGATGTTTTTTAG	NA	False	NA	22	True	AATAAA	-21	NA	55131522	55136384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
ES_00016773	chr14	+	1902	5	FSM	ENSMUSG00000022194.16	ENSMUST00000150975.8	1775	5	-89	-38	-82	0	multi-exon	FALSE	canonical	3	2245	junction_1	156.472641378613	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAGATGACCTTGAT	NA	False	NA	-1	True	NA	NA	NA	55131522	55135591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408
ES_00016774	chr14	+	1931	7	FSM	ENSMUSG00000022194.16	ENSMUST00000022808.14	1030	7	-143	-758	-143	758	multi-exon	FALSE	canonical	3	2071	junction_6	205.041797906887	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTTGGATGTTTTTTAG	NA	False	NA	22	True	AATAAA	-21	NA	55131461	55136384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ES_00016789	chr14	+	2701	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	27.5910366989435	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797936	55807518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00016790	chr14	+	3148	14	FSM	ENSMUSG00000022214.16	ENSMUST00000128490.9	2660	14	-491	3	-2	0	multi-exon	FALSE	canonical	3	97	junction_1	16.6800735031656	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797936	55807518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00016791	chr14	+	2640	15	FSM	ENSMUSG00000022214.16	ENSMUST00000152681.8	2624	15	-16	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	36.5692661191033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797974	55807518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55798085_55798531_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00016792	chr14	+	3046	15	NIC	ENSMUSG00000022214.16	novel	2538	15	NA	NA	-6	0	intron_retention	TRUE	canonical	3	28	junction_1	31.9189023390625	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797456	55807518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_55798085_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00016793	chr14	+	2484	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	35.7694573852142	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797995	55807521	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_55798085_55798692_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00016795	chr14	+	4413	12	FSM	ENSMUSG00000022214.16	ENSMUST00000153638.8	4413	12	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_11	13.2121907143015	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55798440	55807521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00016797	chr14	+	1120	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	-8	0	-8	0	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815808	55818985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ES_00016803	chr14	+	2459	9	FSM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	14.5086181285469	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55841441	55847487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ES_00016813	chr14	+	474	1	FSM	ENSMUSG00000040432.6	ENSMUST00000228302.2	3703	1	560	2669	560	-760	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGAGACCCTGACTGC	NA	False	NA	NA	False	NA	NA	NA	55999452	55999926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55999500_55999900
ES_00016827	chr14	+	3505	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640154	56726892	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ES_00016828	chr14	+	619	6	FSM	ENSMUSG00000000365.10	ENSMUST00000223646.2	621	6	0	2	0	-2	multi-exon	FALSE	canonical	3	417	junction_5	60.8815242910359	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTATTGGTTTCCTTTT	NA	False	NA	6	True	ATTAAA	-14	NA	56719632	56726890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ES_00016831	chr14	+	2972	14	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_3	214.971059012644	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTCTACTAGTCGTTG	1778	False	NA	29	True	ATTAAA	-15	NA	56905704	56934884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ES_00016836	chr14	+	6895	25	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	99	-308	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	35.7067531739057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACTCAAATTGTAACTC	NA	False	NA	24	True	CATAAA	-7	NA	57124208	57199850	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_57124414_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
ES_00016841	chr14	+	2409	2	NIC	ENSMUSG00000050222.12	novel	1274	3	NA	NA	-744	9	intron_retention	FALSE	canonical	3	29	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGGTCTTAATTTGTG	NA	False	NA	19	True	ATTAAA	-31	NA	57761489	57780632	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_57763057_57779790
ES_00016842	chr14	+	1274	3	FSM	ENSMUSG00000050222.12	ENSMUST00000089494.6	1274	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAAAGCCACTGGTCT	NA	False	NA	10	True	ATTAAA	-22	NA	57762233	57780623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_57762379_57762760_57763057_57779790
ES_00016850	chr14	+	3922	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	-19	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	28.7856139459962	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438657	59474714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ES_00016857	chr14	+	2721	4	FSM	ENSMUSG00000021987.10	ENSMUST00000224164.2	2877	4	157	-1	157	1	multi-exon	FALSE	canonical	3	86	junction_3	4.02768199119819	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTGTTTTTCTTTTG	NA	False	NA	10	True	ATTAAA	-14	NA	60533860	60539820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_60534224_60535511_60535644_60536363_60536491_60537721
ES_00016863	chr14	+	2057	3	NNC	ENSMUSG00000035235.14	novel	1550	3	NA	NA	-373	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	103	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836615	61843395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_61837154_61837242_61837345_61841978
ES_00016864	chr14	+	1550	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	49	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836988	61843395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_61837020_61837242_61837345_61841978
ES_00016867	chr14	+	1364	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	26	4	combination_of_known_splicesites	TRUE	canonical	3	239	junction_2	190.414168473765	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATAGTTTTGTTGCTTTTT	NA	False	NA	9	True	AATAAA	-21	NA	62569542	62610445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ES_00016873	chr14	+	557	4	NIC	ENSMUSG00000054763.10	novel	618	3	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	14.3527000944073	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	28	True	AATAAA	-37	NA	63284410	63286059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_63284500_63284892_63285068_63285676_63285752_63285841
ES_00016875	chr14	+	5726	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	0	-983	0	983	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGATGACCTGCTTGGT	NA	False	NA	NA	False	NA	NA	NA	63359910	63384355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ES_00016880	chr14	+	1360	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	-65	0	-65	0	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4022	False	NA	NA	False	AATAAA	-39	NA	64097747	64157304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
ES_00016886	chr14	+	2675	17	FSM	ENSMUSG00000021975.10	ENSMUST00000239450.2	2677	17	2	0	2	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTCTATTGCACTACA	NA	False	NA	20	True	AATAAA	-20	NA	65187495	65277284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ES_00016889	chr14	+	4229	10	FSM	ENSMUSG00000034522.11	ENSMUST00000066994.7	4229	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	17.4171761399877	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGTGTGTGCCTCTCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	65596124	65636379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_65596205_65622844_65623110_65623775_65624009_65626238_65626349_65628735_65628966_65629503_65629605_65630368_65630670_65632204_65632298_65633303_65633408_65633667
ES_00016892	chr14	+	3538	8	NIC	ENSMUSG00000022032.15	novel	3179	8	NA	NA	76	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	14.8172541453592	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	NA	False	NA	NA	False	AATAAA	-19	NA	65914001	66002275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_65914208_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
ES_00016894	chr14	+	2268	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	-38	0	-38	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074712	66104056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ES_00016899	chr14	+	1154	11	FSM	ENSMUSG00000034327.18	ENSMUST00000152243.8	2528	11	223	1151	9	-1151	multi-exon	FALSE	canonical	3	8	junction_4	40.2841159763994	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCTCCCATCTCTGAA	NA	False	NA	NA	False	NA	NA	NA	67953608	67975959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_67953631_67962006_67962129_67963775_67963820_67966098_67966196_67966672_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825
ES_00016901	chr14	+	3121	12	FSM	ENSMUSG00000034327.18	ENSMUST00000156700.2	3098	12	-23	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	31.9689932422906	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTTCTGCTCTTGCT	NA	False	NA	10	True	AATAAA	-22	NA	67953710	67979610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966672_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
ES_00016902	chr14	+	3140	12	FSM	ENSMUSG00000034327.18	ENSMUST00000150768.8	1302	12	0	-1838	0	-3	multi-exon	FALSE	canonical	3	52	junction_9	22.4881970879051	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGTGTGGTTTCCTGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	67953710	67979756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
ES_00016912	chr14	+	3422	13	FSM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	0	167	0	-167	multi-exon	FALSE	canonical	3	83	junction_8	35.9663229826026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAGTGGAAGTTAGGGG	NA	False	NA	NA	False	AAGAAA	-44	NA	69792872	69822802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812849_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
ES_00016913	chr14	+	5197	14	FSM	ENSMUSG00000034205.17	ENSMUST00000022660.14	5316	14	115	4	115	-4	multi-exon	FALSE	canonical	0	0	junction_1	1.66410058867569	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTCTGGCTCGTCTCGG	6152	False	NA	NA	False	AATAAA	-16	NA	69846631	69933279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_69846744_69871332_69871740_69882144_69882321_69898087_69898300_69901348_69901572_69904715_69904900_69910830_69910983_69913124_69913293_69915261_69915425_69919543_69919788_69926476_69926593_69927582_69927720_69929762_69929875_69930488
ES_00016914	chr14	+	2700	6	FSM	ENSMUSG00000022074.7	ENSMUST00000224533.2	2787	6	-17	104	-4	-104	multi-exon	FALSE	canonical	0	0	junction_5	22.5831795812724	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGTTCTATAAATCTTTG	NA	False	NA	NA	False	NA	NA	NA	70004916	70017031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169
ES_00016917	chr14	+	1231	1	FSM	ENSMUSG00000058745.5	ENSMUST00000078149.5	255	1	69	-1045	69	1045	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATTTCATTTCTCA	NA	False	NA	NA	False	AATAAA	-27	NA	70597704	70598935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_70597700_70598900
ES_00016919	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	6567	False	NA	30	True	AATAAA	-26	NA	70782793	70786373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ES_00016925	chr14	+	276	2	Antisense	novelGene_ENSMUSG00000022105.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACAGGTCTTTGGCTCA	NA	False	NA	NA	False	NA	NA	NA	73424746	73432182	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_73424934_73432093
ES_00016929	chr14	+	2103	6	FSM	ENSMUSG00000022109.7	ENSMUST00000228141.2	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	13.5735036007657	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCACAATTAAGTCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	73747477	73756289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754779_73755333
ES_00016932	chr14	+	1545	12	FSM	ENSMUSG00000022110.14	ENSMUST00000022706.7	1545	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	475.849184386179	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTTATTCTTTAGT	NA	False	NA	NA	False	AATAAA	-13	NA	73790205	73833223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813_73832914_73833137
ES_00016934	chr14	+	1117	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969823	74987288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ES_00016937	chr14	+	6207	19	NIC	ENSMUSG00000022000.12	novel	6151	19	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	26.5676402070797	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521759	75581866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
ES_00016938	chr14	+	6157	19	FSM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-13	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	25.8044043517888	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521812	75581866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ES_00016939	chr14	+	6151	19	FSM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	33.0591034510565	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521812	75581866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_75522106_75529011_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
ES_00016941	chr14	+	1069	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	0	100	0	18	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	1896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTGTGCTGACCCTGTA	838	False	NA	22	True	AATAAA	-33	NA	76082532	76085755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ES_00016945	chr14	+	1491	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	-16	1	-16	0	multi-exon	FALSE	canonical	3	21	junction_1	1157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACGTGTTTCTATATGA	6259	False	NA	28	True	AATAAA	-18	NA	76741637	76745202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76741734_76742688_76742738_76743856
ES_00016946	chr14	+	1762	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6539	False	NA	31	True	AATAAA	-21	NA	76741917	76745205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76742282_76742688_76742738_76743856
ES_00016947	chr14	+	1736	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	0	24468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGGAATTAAATAACTACC	6591	False	NA	NA	False	NA	NA	NA	76741969	76769673	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_76742282_76742688_76742738_76743856_76745203_76769644
ES_00016953	chr14	+	3406	26	FSM	ENSMUSG00000058997.9	ENSMUST00000227255.2	3406	26	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_16	9.45524193238862	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCAGTCTCCGTCCTTTTG	9408	False	NA	3	True	AATAAA	-19	NA	79086693	79302708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293
ES_00016960	chr14	+	2732	2	FSM	ENSMUSG00000022024.11	ENSMUST00000226320.2	510	2	-220	-2002	-220	2002	multi-exon	FALSE	canonical	3	1882	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAGCTTGGAGAAATGG	NA	False	NA	NA	False	TATAAA	-31	NA	79861858	79868419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_79862463_79866291
ES_00016962	chr14	+	5715	12	FSM	ENSMUSG00000022019.17	ENSMUST00000169504.8	5280	12	0	-435	0	435	multi-exon	FALSE	canonical	3	80	junction_9	9.05812269605902	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTTATTTTGTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	87654074	87752637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080
ES_00016964	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ES_00016967	chr14	+	3363	11	FSM	ENSMUSG00000022064.11	ENSMUST00000227969.2	3363	11	0	0	0	0	multi-exon	FALSE	canonical	2	66	junction_3	21.0855400689667	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTCTGTCAACTCT	NA	False	NA	NA	False	AATAAA	-16	NA	99370720	99461114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994
ES_00016968	chr14	+	361	2	Intergenic	novelGene_1314	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	585	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGACTGGATCT	NA	False	NA	NA	False	NA	NA	NA	99481607	99487330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_99481826_99487187
ES_00016974	chr14	+	1011	8	FSM	ENSMUSG00000022111.10	ENSMUST00000226340.2	935	8	-76	0	-76	0	multi-exon	FALSE	canonical	3	64	junction_4	1942.45800521937	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGTTGTTTTTGCTA	2983	False	NA	21	True	AATAAA	-17	NA	101903155	101933560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101923006_101923199_101928007_101928084_101932594_101932654_101933337
ES_00016975	chr14	+	5083	28	NIC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	-107	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	5.95755448303927	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTATTGTTTCTAATTA	NA	False	NA	34	True	AATAAA	-34	NA	101967285	102172141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ES_00016976	chr14	+	589	5	FSM	ENSMUSG00000033060.17	ENSMUST00000160876.2	664	5	75	0	43	0	multi-exon	FALSE	canonical	3	16	junction_4	1.08972473588517	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGATGACATCCTCGATG	NA	False	NA	NA	False	NA	NA	NA	102121597	102137551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506
ES_00016980	chr14	+	1998	8	FSM	ENSMUSG00000055717.14	ENSMUST00000160805.8	1998	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	16.4812818998167	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTTCTATAACATGGTTT	NA	False	NA	NA	False	AATACA	-16	NA	103888081	103941746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_103888345_103894368_103894509_103921669_103921820_103923104_103923255_103925497_103925840_103932603_103932760_103939952_103940275_103941271
ES_00016982	chr14	+	1695	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	0	0	0	0	multi-exon	TRUE	canonical	3	137	junction_7	99.9552961302691	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496187	105546305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
ES_00016991	chr14	+	1875	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374569	118400673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
ES_00016996	chr14	+	4191	2	FSM	ENSMUSG00000051615.15	ENSMUST00000062117.14	4191	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGTTTGTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	120715855	120744606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_120716453_120741012
ES_00016997	chr14	+	4446	3	NNC	ENSMUSG00000051615.15	novel	4191	2	NA	NA	-279	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	46	junction_1	28	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGTTTGTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	120715576	120744606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_120715999_120716022_120716453_120741012
ES_00017000	chr14	+	4140	26	FSM	ENSMUSG00000030662.11	ENSMUST00000228277.2	4140	26	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	254.949231024532	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTGTAGAACTTCAGT	6454	False	NA	18	True	AATAAA	-20	NA	121153258	121184830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_121153582_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ES_00017001	chr14	+	4958	27	FSM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	-77	4	-77	-4	multi-exon	FALSE	canonical	3	58	junction_13	25.8768133172464	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCACCTGTGTCTTCTC	NA	False	NA	31	True	AATAAA	-44	NA	121272898	121521152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492819_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ES_00017002	chr14	+	5011	27	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	-156	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_13	30.1476887355345	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121272819	121521156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492849_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ES_00017005	chr14	+	2087	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTTTTCAGTAGTTTTT	8887	False	NA	13	True	AATAAA	-13	NA	122116032	122258443	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
ES_00017006	chr14	+	1706	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	72	-1	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTCAGTAGTTTTTAT	2082	False	NA	15	True	AATAAA	-15	NA	122183797	122258445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ES_00017012	chr14	+	1092	1	FSM	ENSMUSG00000090674.2	ENSMUST00000166043.2	1091	1	91	-92	91	92	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAGTTCACAGTAAAAAC	NA	False	NA	NA	False	TTTAAA	-27	NA	122359055	122360147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_122359100_122360100
ES_00017016	chr14	+	2592	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTGCTTGCAATTTT	NA	False	NA	NA	False	TATAAA	-5	NA	122771750	123127356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ES_00017017	chr14	-	206	1	Intergenic	novelGene_1188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTAATTTCAATCTACAGA	NA	False	NA	NA	False	AAAAAG	-5	NA	3881722	3881516	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_3881500_3881700
ES_00017018	chr14	-	336	1	FSM	ENSMUSG00000035129.7	ENSMUST00000038304.7	1242	1	1125	-219	1125	219	mono-exon	FALSE	NA	NA	NA	NA	NA	831	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCGACTGCTGCACTTTA	NA	False	NA	NA	False	NA	NA	NA	3937208	3936872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_3936900_3937200
ES_00017019	chr14	-	4590	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	10	-2	10	2	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGTCCCAATAAGATTAC	NA	False	NA	NA	False	AATAAA	-24	NA	4198550	4185690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
ES_00017023	chr14	-	10132	36	FSM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	0	203	0	-203	multi-exon	FALSE	canonical	3	144	junction_31	34.1687767724051	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAGAAAAAAAAGTATGC	3843	False	NA	NA	False	NA	NA	NA	6104584	6034503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6039465_6040330_6040426_6041163_6041290_6044297_6044409_6045984_6046065_6046939_6047142_6048898_6049061_6049277_6049423_6051231_6051427_6052727_6052812_6053050_6053207_6055769_6055862_6056006_6056203_6056643_6056845_6057572_6057708_6059737_6059970_6060445_6060595_6060814_6060937_6062357_6062473_6062558_6062652_6062923_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
ES_00017024	chr14	-	230	1	FSM	ENSMUSG00000017485.12	ENSMUST00000224695.2	837	1	-63	670	-63	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCCAGTAATGGTATGG	NA	False	NA	NA	False	AATATA	-44	NA	6046640	6046410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6046400_6046600
ES_00017025	chr14	-	2933	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	0	2	0	-2	multi-exon	FALSE	canonical	3	40	junction_2	12.9506373690434	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTATAGAGTGAAAGAGTAG	NA	False	NA	NA	False	AATAAA	-12	NA	6220483	6157838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
ES_00017026	chr14	-	600	1	FSM	ENSMUSG00000114842.2	ENSMUST00000224181.2	327	1	-321	48	-321	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACAGAAGACCTGTCTC	NA	False	NA	NA	False	TTTAAA	-13	NA	6196089	6195489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6195500_6196100
ES_00017027	chr14	-	750	1	FSM	ENSMUSG00000114419.2	ENSMUST00000224044.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGTTTTTTTATTGTG	NA	False	NA	NA	False	AATATA	-20	NA	6198674	6197924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6197900_6198700
ES_00017028	chr14	-	7572	25	FSM	ENSMUSG00000021733.12	ENSMUST00000057015.8	8132	25	565	-5	-181	5	multi-exon	TRUE	canonical	3	66	junction_19	12.4782449576141	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTGTTGTTTTTTACCT	NA	False	NA	0	True	AATAAA	-19	NA	7766919	7669817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
ES_00017030	chr14	-	3594	24	FSM	ENSMUSG00000021733.12	ENSMUST00000226079.3	3594	24	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	21.3588477702294	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATTAATTAAGTGCTC	NA	False	NA	NA	False	GGGGCT	-42	NA	7766684	7673452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_7673687_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
ES_00017031	chr14	-	7347	25	FSM	ENSMUSG00000021733.12	ENSMUST00000225630.3	3663	25	-54	-3630	0	0	multi-exon	FALSE	canonical	0	0	junction_19	22.1114208172057	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCTTGGCTGTTGTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	7766738	7669822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729888_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
ES_00017034	chr14	-	2300	11	FSM	ENSMUSG00000068758.9	ENSMUST00000224163.2	2315	11	0	15	0	-15	multi-exon	FALSE	canonical	3	7	junction_10	8.68849814409832	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTTTGTTTGTAGCAG	NA	False	NA	NA	False	AATAAA	-9	NA	8123171	8113766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574
ES_00017035	chr14	-	6853	12	FSM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_11	5.78399044384977	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTGGCTGCATGCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	8457272	8362460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_8366457_8368861_8369829_8373447_8373570_8373864_8374064_8374161_8374407_8379653_8379737_8380307_8380568_8382230_8382481_8416739_8416845_8456107_8456177_8456393_8456691_8457012
ES_00017036	chr14	-	333	1	FSM	ENSMUSG00000021741.5	ENSMUST00000022260.5	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCATTTATTTAAGATCT	NA	False	NA	NA	False	AAGAAA	-26	NA	9602210	9601877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_9601900_9602200
ES_00017037	chr14	-	2335	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	0	-1144	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTCAGAAAAAGCTTTGT	NA	False	NA	-8	True	ATTAAA	-45	NA	10185505	10166639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ES_00017038	chr14	-	2444	5	FSM	ENSMUSG00000033111.17	ENSMUST00000224389.2	2444	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	59.4011784394889	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185509	10166531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185429
ES_00017039	chr14	-	2292	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTCAGAAAAAGCTTTGT	NA	False	NA	-8	True	ATTAAA	-45	NA	10185541	10166639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
ES_00017040	chr14	-	2314	5	FSM	ENSMUSG00000033111.17	ENSMUST00000163392.3	2452	5	40	98	4	10	multi-exon	FALSE	canonical	3	65	junction_4	38.2295697072306	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTTTGTGTTTTCTTTC	NA	False	NA	2	True	AATACA	-29	NA	10185550	10166629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
ES_00017041	chr14	-	1356	5	NIC	ENSMUSG00000033111.17	novel	1191	5	NA	NA	14	2	intron_retention	FALSE	canonical	1	6	junction_4	62.3232500757141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGAGTCTCCAGTTCCT	NA	False	NA	0	True	AATAAA	-26	NA	10185448	10167775	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185215
ES_00017043	chr14	-	8998	30	Intergenic	novelGene_1201	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	18	junction_1	15.8647673866671	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATAGTATTGGGCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	10916335	10227722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_10229143_10229363_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877_10517058_10748553_10748659_10915440
ES_00017044	chr14	-	9306	30	Intergenic	novelGene_1202	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_16	18.48700414441	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATAGTATTGGGCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	10916335	10227722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10290412_10290500_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877_10517058_10748553_10748659_10915440
ES_00017045	chr14	-	392	1	FSM	ENSMUSG00000072714.3	ENSMUST00000080237.5	438	1	80	-34	80	34	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAAAAAAGATTTGAAG	NA	False	NA	NA	False	AATAAA	-14	NA	11242141	11241749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_11241700_11242100
ES_00017046	chr14	-	532	1	FSM	ENSMUSG00000089785.3	ENSMUST00000162199.2	826	1	337	-43	337	43	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGATATACCATATCTT	NA	False	NA	NA	False	NA	NA	NA	11289643	11289111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_11289100_11289600
ES_00017048	chr14	-	1322	1	FSM	ENSMUSG00000114533.2	ENSMUST00000224382.2	1279	1	40	-83	40	83	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATAAAGGTTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	14060816	14059494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14059500_14060800
ES_00017049	chr14	-	1650	3	FSM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	7.5	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	14255633	14246209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14247587_14249552_14249623_14255430
ES_00017050	chr14	-	3558	19	NNC	ENSMUSG00000033885.16	novel	2812	18	NA	NA	-81	927	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	31.7087439745639	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATAATATACTTCTTAGA	NA	False	NA	NA	False	ATTAAA	-10	NA	14371643	14303728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_14303850_14304111_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
ES_00017051	chr14	-	2771	18	FSM	ENSMUSG00000033885.16	ENSMUST00000225653.2	2765	18	0	-6	0	0	multi-exon	FALSE	canonical	3	52	junction_2	21.2781870861862	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	False	NA	0	True	AATAAA	-17	NA	14371518	14304655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14305839_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
ES_00017053	chr14	-	2418	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	-17	0	17	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTATGTGTGTGTGTGTGT	NA	False	NA	2	True	NA	NA	NA	14389406	14377921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ES_00017054	chr14	-	2321	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	3	-98	3	98	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGAGGAGGCCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	14466868	14412911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ES_00017055	chr14	-	1958	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTGAATTCAGTGAA	NA	False	NA	NA	False	AGTAAA	-18	NA	14466854	14413107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
ES_00017057	chr14	-	9064	46	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	11	8	at_least_one_novel_splicesite	FALSE	canonical	3	255	junction_40	115.220754303303	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTCTTGGAGTGGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	14651805	14518176	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547059_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ES_00017058	chr14	-	9014	46	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	-6	8	at_least_one_novel_splicesite	FALSE	non_canonical	1	53	junction_1	136.006699181409	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTCTTGGAGTGGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	14651822	14518176	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_14518407_14518434_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ES_00017059	chr14	-	9108	46	FSM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	0	-8	0	8	multi-exon	FALSE	canonical	3	76	junction_16	125.273027256567	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTCTTGGAGTGGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	14651816	14518176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547026_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ES_00017060	chr14	-	676	1	FSM	ENSMUSG00000049460.8	ENSMUST00000057361.8	823	1	194	-47	194	47	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGGAAGGCCTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	14668371	14667695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14667700_14668400
ES_00017061	chr14	-	844	1	FSM	ENSMUSG00000094242.3	ENSMUST00000170706.2	844	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGAACCCTCAGCCAAG	NA	False	NA	NA	False	NA	NA	NA	15228331	15227487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_15227500_15228300
ES_00017062	chr14	-	988	1	FSM	ENSMUSG00000094737.2	ENSMUST00000178600.2	844	1	-7	-137	-7	137	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATATAGACTAGCAATTA	NA	False	NA	NA	False	AATAAA	-23	NA	16434813	16433825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_16433800_16434800
ES_00017063	chr14	-	860	1	FSM	ENSMUSG00000095991.2	ENSMUST00000179266.2	847	1	-13	0	-13	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGAACCCTCAGCCAAGA	NA	False	NA	NA	False	NA	NA	NA	16511341	16510481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_16510500_16511300
ES_00017064	chr14	-	859	1	FSM	ENSMUSG00000091613.2	ENSMUST00000168078.2	850	1	-9	0	-9	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACCCTCAGCCAAGAGA	NA	False	NA	NA	False	NA	NA	NA	16592706	16591847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_16591800_16592700
ES_00017065	chr14	-	864	1	FSM	ENSMUSG00000107157.2	ENSMUST00000168753.3	850	1	-14	0	-14	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCTCAGCCAAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	16731453	16730589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_16730600_16731500
ES_00017066	chr14	-	857	1	FSM	ENSMUSG00000106752.2	ENSMUST00000177813.3	850	1	-7	0	-7	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCTCAGCCAAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	17083974	17083117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_17083100_17084000
ES_00017067	chr14	-	1884	6	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	14383	1059	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	12.0565334984812	118	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTATGCTTCAGCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	17599814	17592862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386_17599522_17599678
ES_00017068	chr14	-	519	4	FSM	ENSMUSG00000079386.9	ENSMUST00000112776.4	519	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.0277537068951	580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGCACAGGAAATACACC	NA	False	NA	NA	False	NA	NA	NA	17955015	17950320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_17950397_17952946_17953130_17953805_17953938_17954887
ES_00017069	chr14	-	360	4	NNC	ENSMUSG00000079388.10	novel	1886	6	NA	NA	-12	-10051	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5.65685424949238	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGTTCAAAAAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	18135022	18125135	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_18125198_18130129_18130268_18133484_18133599_18134976
ES_00017071	chr14	-	590	5	NNC	ENSMUSG00000091563.9	novel	1961	7	NA	NA	9	-5555	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.92028643696715	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATACAGTACTCCAAGGAA	NA	False	NA	NA	False	AATAAA	-23	NA	18359238	18342543	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_18342630_18343579_18343743_18354336_18354488_18357666_18357781_18359162
ES_00017073	chr14	-	1756	5	ISM	ENSMUSG00000096574.8	ENSMUST00000177786.8	1955	7	14560	0	14560	0	3prime_fragment	FALSE	canonical	0	0	junction_3	1.6393596310755	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19122586	19114973	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451
ES_00017074	chr14	-	308	2	ISM	ENSMUSG00000079409.9	ENSMUST00000171150.8	1758	5	1984	5400	1984	-5386	internal_fragment	FALSE	canonical	3	27	junction_1	0	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCAGGTAGGATGATGT	NA	False	NA	NA	False	NA	NA	NA	19279476	19278491	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_19278668_19279344
ES_00017076	chr14	-	1021	9	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	37573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.88052853317	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAAAAGAAAAGAAAATTC	1688	False	NA	NA	False	NA	NA	NA	19873892	19823845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_19823871_19861984_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ES_00017077	chr14	-	1024	9	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	37573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.88052853317	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAAAAGAAAAGAAAATTC	1688	False	NA	NA	False	NA	NA	NA	19873892	19823845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_19823871_19861981_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ES_00017078	chr14	-	1562	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATATACTTGAGTCTC	1688	False	NA	NA	False	AGTAAA	-19	NA	19873892	19861418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ES_00017079	chr14	-	3647	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	179	0	-11	0	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTACGGGGTCACTTTC	NA	False	NA	-4	True	AATAAA	-18	NA	20027138	19922626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
ES_00017080	chr14	-	2120	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	40	155	40	-155	multi-exon	FALSE	canonical	3	53	junction_1	0	2161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCTGTTGGGCCTGGCT	5345	False	NA	NA	False	NA	NA	NA	20133211	20125858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20127713_20132945
ES_00017082	chr14	-	3132	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGCTTCCTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	20398189	20369919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
ES_00017087	chr14	-	2572	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	0	0	0	0	multi-exon	TRUE	canonical	3	1591	junction_2	40	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCCCAGTTTTCCT	8527	False	NA	NA	False	AAAACA	-24	NA	20443702	20439371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20441529_20441960_20442222_20443548
ES_00017088	chr14	-	801	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	790	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8678	False	NA	-36	True	AATAAA	-14	NA	20443551	20441294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20441529_20441960_20442222_20443245
ES_00017089	chr14	-	2730	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	0	-3	0	3	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTGACCTAGAGTAATT	8200	False	NA	2	True	AATAAA	-27	NA	20529979	20505341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
ES_00017090	chr14	-	2825	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	12	14	0	3	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTGACCTAGAGTAATT	7990	False	NA	2	True	AATAAA	-27	NA	20530189	20505341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ES_00017091	chr14	-	2891	14	FSM	ENSMUSG00000021814.18	ENSMUST00000100844.6	2904	14	0	13	0	3	multi-exon	FALSE	canonical	2	9	junction_9	337.357184335068	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTGACCTAGAGTAATT	7990	False	NA	2	True	AATAAA	-27	NA	20530189	20505341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517525_20517592_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ES_00017093	chr14	-	761	3	FSM	ENSMUSG00000021814.18	ENSMUST00000225118.2	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_1	21	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACCTCTTGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	20521504	20517413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20518004_20519455_20519558_20521435
ES_00017094	chr14	-	3831	14	FSM	ENSMUSG00000021816.12	ENSMUST00000159027.8	3831	14	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	50.211858850582	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCTGTCTCTAAAATTAC	NA	False	NA	-2	True	ATTAAA	-16	NA	20596641	20549431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ES_00017095	chr14	-	3695	14	FSM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	107	-504	0	0	multi-exon	FALSE	canonical	3	82	junction_1	49.8631262652749	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCTGTCTCTAAAATTAC	NA	False	NA	-2	True	ATTAAA	-16	NA	20596508	20549431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ES_00017096	chr14	-	3074	13	FSM	ENSMUSG00000021816.12	ENSMUST00000022355.11	3074	13	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	56.1047507396259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596580	20550097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20551731_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ES_00017097	chr14	-	3754	13	NIC	ENSMUSG00000021816.12	novel	3831	14	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	55.7529271777625	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCTGTCTCTAAAATTAC	NA	False	NA	-2	True	ATTAAA	-16	NA	20596597	20549431	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_20551731_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ES_00017098	chr14	-	2328	12	FSM	ENSMUSG00000021816.12	ENSMUST00000161989.2	2322	12	0	-6	0	6	multi-exon	FALSE	canonical	3	102	junction_2	32.8535442821749	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGGCTCGTTGAATAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596508	20557732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ES_00017099	chr14	-	2426	12	ISM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	0	7803	0	0	5prime_fragment	FALSE	canonical	3	105	junction_2	32.0745515869534	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTAATCTGGCTCGTT	NA	False	NA	-7	True	AATAAA	-19	NA	20596615	20557738	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ES_00017104	chr14	-	678	1	FSM	ENSMUSG00000097577.3	ENSMUST00000224976.2	1019	1	-11	352	-11	-352	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTTGTGATTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	20753107	20752429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20752400_20753100
ES_00017105	chr14	-	3907	15	FSM	ENSMUSG00000039308.7	ENSMUST00000223679.2	3907	15	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	9.23281636117516	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9423	False	NA	-1	True	AATAAA	-15	NA	20784630	20773797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
ES_00017106	chr14	-	3564	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	0	True	AATAAA	-18	NA	20844119	20784942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ES_00017107	chr14	-	6721	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	0	11	0	-11	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCTTGTATATCAATGA	NA	False	NA	NA	False	CATAAA	-18	NA	21102518	21081520	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ES_00017111	chr14	-	981	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898962	21897246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ES_00017113	chr14	-	7927	32	FSM	ENSMUSG00000021782.15	ENSMUST00000090398.11	7851	32	-76	0	-76	0	multi-exon	FALSE	canonical	3	63	junction_27	24.1232527147577	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24296064	24184022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087_24222273_24226463_24226777_24227795_24228056_24240385_24240570_24241215_24241360_24242859_24243023_24252365_24252435_24295214
ES_00017114	chr14	-	7800	31	FSM	ENSMUSG00000021782.15	ENSMUST00000073687.13	7784	31	0	-16	0	16	multi-exon	TRUE	canonical	2	6	junction_30	29.8062074071828	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGGAGGCAGCTCCTCC	NA	False	NA	12	True	AATAAA	-32	NA	24295988	24184004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087_24222273_24226463_24226777_24227795_24228056_24240385_24240570_24241215_24241360_24242859_24243023_24295214
ES_00017116	chr14	-	4694	31	FSM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	0	-7	0	7	multi-exon	FALSE	canonical	3	105	junction_23	15.9947560851118	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTTTGTTAACTTTG	NA	False	NA	4	True	AATACA	-33	NA	24537120	24498756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
ES_00017117	chr14	-	779	3	FSM	ENSMUSG00000025280.9	ENSMUST00000225014.2	775	3	0	-4	0	4	multi-exon	FALSE	canonical	3	137	junction_2	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAATCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	24537126	24533866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_24534324_24534454_24534591_24536940
ES_00017119	chr14	-	1837	4	FSM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	-224	-58	-224	58	multi-exon	TRUE	canonical	3	143	junction_3	28.7170100579198	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGAGACGTGAGGATTGG	NA	False	NA	NA	False	NA	NA	NA	25903748	25887871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25903209
ES_00017120	chr14	-	536	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	71.4624998785299	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902898	25888827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
ES_00017122	chr14	-	1909	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	0	238	0	-238	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTGTGGATTGCGTG	NA	False	NA	NA	False	NA	NA	NA	25928096	25923961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
ES_00017123	chr14	-	1108	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25927674	25924593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
ES_00017124	chr14	-	212	1	Intergenic	novelGene_1223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAAGCACTCACCCTGCA	NA	False	NA	NA	False	NA	NA	NA	26013611	26013399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_26013400_26013600
ES_00017126	chr14	-	5476	24	FSM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_11	42.4199902941944	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGAGTTGTACATCATT	NA	False	NA	1	True	AATAAA	-23	NA	26256086	26134322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ES_00017127	chr14	-	5530	21	NIC	ENSMUSG00000021870.18	novel	4501	23	NA	NA	29	-2	intron_retention	FALSE	canonical	3	90	junction_11	33.3543100663168	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTGAGTTGTACATCA	NA	False	NA	-1	True	AATAAA	-21	NA	26256021	26134324	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482
ES_00017128	chr14	-	5324	22	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	12	-2	combination_of_known_junctions	FALSE	canonical	3	90	junction_11	32.5658586159231	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTGAGTTGTACATCA	NA	False	NA	-1	True	AATAAA	-21	NA	26256038	26134324	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ES_00017132	chr14	-	7725	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_2	18	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTGGGTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	26391038	26381112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_26387123_26387532_26387612_26389402
ES_00017134	chr14	-	427	6	FSM	ENSMUSG00000040760.12	ENSMUST00000224406.2	427	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	123.866702547537	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTCAAAAAAGAGAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	26692462	26680435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_26680469_26681381_26681424_26682907_26682996_26685603_26685664_26686815_26686915_26692357
ES_00017135	chr14	-	427	2	Antisense	novelGene_ENSMUSG00000040726.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	203	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTGGTCTCTGGCGGGT	NA	False	NA	NA	False	NA	NA	NA	26717399	26707354	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_26707522_26717139
ES_00017137	chr14	-	4262	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGACTGCAATTCAATT	7526	False	NA	NA	False	AATAAA	-17	NA	27230417	27203046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ES_00017139	chr14	-	1988	11	ISM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	0	10295	0	-8973	5prime_fragment	FALSE	canonical	3	74	junction_8	15.0283066245003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTGTGATGAAATTCC	7526	False	NA	NA	False	ATTAAA	-17	NA	27230417	27213341	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ES_00017141	chr14	-	2320	15	NNC	ENSMUSG00000021948.18	novel	2777	18	NA	NA	20	0	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_14	30.3758765725538	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	443	False	NA	-3	True	AATAAA	-17	NA	30329759	30317310	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329601
ES_00017142	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_17	15.936508975905	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	-3	True	AATAAA	-17	NA	30348167	30317310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ES_00017144	chr14	-	1289	4	FSM	ENSMUSG00000021948.18	ENSMUST00000140701.2	1289	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	11.0855260988773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCCTGTGTTTCATTAC	8038	False	NA	-68	True	NA	NA	NA	30322164	30317609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566
ES_00017146	chr14	-	1008	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228767.2	1008	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	828.969775618441	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	30723629	30721782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30722180_30722634_30722718_30722800_30722861_30723161
ES_00017147	chr14	-	1241	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACATTTGTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	30723326	30721784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30722861_30723161
ES_00017148	chr14	-	1804	3	FSM	ENSMUSG00000021917.17	ENSMUST00000227838.2	378	3	-1037	-389	-715	0	multi-exon	FALSE	canonical	3	1787	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACATTTGTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	30724344	30721784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30722180_30722634_30722861_30723161
ES_00017150	chr14	-	1765	15	FSM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_10	235.33125806065	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ES_00017151	chr14	-	1947	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741109	30734389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ES_00017152	chr14	-	1033	2	FSM	ENSMUSG00000042354.8	ENSMUST00000227869.2	1033	2	0	0	0	0	multi-exon	FALSE	canonical	3	1081	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	-2	True	AATAAA	-19	NA	30735511	30734390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30734592_30734679
ES_00017153	chr14	-	597	5	FSM	ENSMUSG00000042354.8	ENSMUST00000226379.2	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	417.132098381316	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	-2	True	AATAAA	-19	NA	30735712	30734390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30734592_30734679_30734747_30735123_30735213_30735385_30735523_30735609
ES_00017160	chr14	-	516	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	-64	-26	-11	26	multi-exon	FALSE	canonical	3	53	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGTTTCTTAAAAATCTA	NA	False	NA	NA	False	TTTAAA	-6	NA	30850924	30846609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30846791_30850589
ES_00017162	chr14	-	5559	21	FSM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_8	71.9902076674321	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTCTTCAAGGTTATA	9321	False	NA	-4	True	AATAAA	-17	NA	30928758	30892886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
ES_00017163	chr14	-	2764	14	FSM	ENSMUSG00000021910.16	ENSMUST00000172142.8	2780	14	16	0	-9	0	multi-exon	TRUE	canonical	3	57	junction_1	267.283529621824	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACATCTTTTTCCTTT	9312	False	NA	3	True	AATAAA	-20	NA	30928767	30905269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30906355_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
ES_00017167	chr14	-	596	4	NNC	ENSMUSG00000021910.16	novel	1763	3	NA	NA	12	5525	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	532.482863574031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAACTCTCTGTGTTTTC	9434	False	NA	NA	False	ATTAAA	-16	NA	30928645	30917375	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_30917583_30925183_30925367_30926398_30926483_30928523
ES_00017168	chr14	-	1763	3	FSM	ENSMUSG00000021910.16	ENSMUST00000171735.2	1763	3	0	0	0	0	multi-exon	FALSE	canonical	3	1094	junction_1	67.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATCAAGC	9421	False	NA	NA	False	NA	NA	NA	30928658	30923822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30925367_30926398_30926483_30928523
ES_00017169	chr14	-	1965	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	0	6	0	0	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGTCTCCTTGTGAATT	NA	False	NA	-3	True	AATAAA	-14	NA	30973272	30959651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
ES_00017171	chr14	-	3946	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGTTTCTTGATGTCTT	NA	False	NA	NA	False	NA	NA	NA	31216997	31198776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ES_00017173	chr14	-	2411	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228727.2	2388	5	0	-23	0	23	multi-exon	FALSE	canonical	3	247	junction_4	24.3823706804732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTATTGCACACAGGTGC	NA	False	NA	NA	False	NA	NA	NA	31216987	31203281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ES_00017174	chr14	-	1045	6	NIC	ENSMUSG00000021891.9	novel	2388	5	NA	NA	2	5	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	111.748646524242	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTTTATATGTATGCAT	NA	False	NA	NA	False	NA	NA	NA	31216976	31203299	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_31203411_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ES_00017177	chr14	-	2469	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	0	175	0	-175	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCCTGTAATTGCAACT	6945	False	NA	NA	False	NA	NA	NA	31362921	31329330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ES_00017179	chr14	-	3062	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	0	-2311	0	1	multi-exon	FALSE	canonical	3	570	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTTTCTTGAAGCTTT	NA	False	NA	-2	True	AATAAA	-17	NA	31807243	31802521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31805204_31806863
ES_00017181	chr14	-	3323	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	-319	-2195	-319	3	multi-exon	FALSE	canonical	3	69	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTCTTGAAGCTTTTA	NA	False	NA	0	True	AATAAA	-19	NA	31808005	31802519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31805204_31807366
ES_00017182	chr14	-	3166	3	FSM	ENSMUSG00000021905.15	ENSMUST00000112001.9	3079	3	-83	-4	0	1	multi-exon	FALSE	canonical	3	4	junction_2	283	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTTTCTTGAAGCTTT	NA	False	NA	-2	True	AATAAA	-17	NA	31807649	31802521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31805204_31806863_31807065_31807366
ES_00017183	chr14	-	591	3	FSM	ENSMUSG00000021905.15	ENSMUST00000167796.2	591	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	281	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGTGTCTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31807649	31804828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31805204_31806863_31806939_31807508
ES_00017186	chr14	-	410	2	FSM	ENSMUSG00000090459.2	ENSMUST00000169975.2	391	2	0	-19	0	19	multi-exon	FALSE	canonical	3	7	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCTTCTTCATTTTT	NA	False	NA	6	True	ATTAAA	-36	NA	32016931	32014861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_32015223_32016882
ES_00017190	chr14	-	2587	12	FSM	ENSMUSG00000021936.15	ENSMUST00000022504.12	2587	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.14655787270487	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAGTAGCACACAGCC	NA	False	NA	NA	False	TTTAAA	-22	NA	33169102	33103005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_33104277_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
ES_00017191	chr14	-	412	1	FSM	ENSMUSG00000115248.2	ENSMUST00000227392.2	384	1	1	-29	1	29	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCATGAACACAAGTTAGAG	NA	False	NA	NA	False	ACTAAA	-26	NA	33150981	33150569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_33150600_33151000
ES_00017192	chr14	-	3602	12	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	25.9930060523281	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032518	33958989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_33995443_33995534_34030996_34031052_34032123
ES_00017193	chr14	-	3704	11	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-236	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	20.0858158908221	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032686	33958989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33995443_33995534_34030996_34031052_34032123
ES_00017195	chr14	-	316	1	Intergenic	novelGene_1238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACGAGATCTGACTCCCT	NA	False	NA	NA	False	NA	NA	NA	34053756	34053440	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_34053400_34053800
ES_00017199	chr14	-	5650	13	NNC	ENSMUSG00000021796.16	novel	5956	13	NA	NA	44	-265	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_12	27.8581476212775	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTACGTAATGTAAGTGTG	NA	False	NA	62	True	NA	NA	NA	34224600	34132955	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902_34147096_34151612_34151758_34156335_34156436_34156594_34156692_34163055_34163159_34165775_34165939_34169728_34169936_34182455_34182573_34224351
ES_00017201	chr14	-	1305	1	FSM	ENSMUSG00000115007.2	ENSMUST00000228874.2	1299	1	-4	-2	-4	2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATTTAAGGTGGATTTT	8019	False	NA	NA	False	AATAAA	-21	NA	34395724	34394419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_34394400_34395700
ES_00017202	chr14	-	7334	10	FSM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.4432623444526	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTCCACAGCTTGT	NA	False	NA	NA	False	AATAAA	-27	NA	36690644	36596892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_36601720_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
ES_00017203	chr14	-	7509	11	FSM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.4444023169711	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTCCACAGCTTGT	NA	False	NA	NA	False	AATAAA	-27	NA	36690734	36596892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_36601720_36612298_36612384_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
ES_00017204	chr14	-	4178	16	NIC	ENSMUSG00000021803.11	novel	4332	17	NA	NA	62	4	combination_of_known_splicesites	FALSE	canonical	2	3	junction_15	5.55937646383717	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACCTCCCGGTCCTCTTG	NA	False	NA	NA	False	AATAAA	-22	NA	36820242	36799809	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36820045
ES_00017207	chr14	-	2573	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857096	36842780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
ES_00017209	chr14	-	601	4	FSM	ENSMUSG00000041028.17	ENSMUST00000223921.2	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	5046	junction_1	285.925786797126	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCATTAGTCATAGATTTA	NA	False	NA	NA	False	NA	NA	NA	36857229	36853354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_36853607_36855127_36855228_36855589_36855761_36857151
ES_00017211	chr14	-	1597	8	FSM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.69998209807429	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCCCCTCCTCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	40615223	40537824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738
ES_00017212	chr14	-	1243	4	FSM	ENSMUSG00000037833.15	ENSMUST00000225854.2	1150	4	-94	1	-94	-1	multi-exon	FALSE	canonical	3	20	junction_3	4.71404520791032	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAGTTGCCAATAATTT	NA	False	NA	NA	False	ATTAAA	-13	NA	40615317	40582340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_40582697_40594486_40594635_40596036_40596197_40614738
ES_00017213	chr14	-	3107	8	FSM	ENSMUSG00000037824.7	ENSMUST00000224209.2	2477	8	21	-651	16	649	multi-exon	TRUE	canonical	3	610	junction_1	25.0591137846786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTGAGGAGCCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	40656257	40627752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144
ES_00017214	chr14	-	3272	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	-148	-649	-148	649	multi-exon	FALSE	canonical	3	610	junction_1	26.6868413267663	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTGAGGAGCCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	40688912	40627752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
ES_00017216	chr14	-	1559	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	0	-22	0	22	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTCCTTGTTCCT	NA	False	NA	0	True	AATAAA	-33	NA	40735732	40715674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
ES_00017217	chr14	-	1589	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	0	-22	0	22	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTCCTTGTTCCT	NA	False	NA	0	True	AATAAA	-33	NA	40735745	40715674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
ES_00017218	chr14	-	2826	2	NNC	ENSMUSG00000090389.3	novel	827	2	NA	NA	812	2160	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATCAGATGGCAAATCT	NA	False	NA	NA	False	AATAAA	-23	NA	42979116	42976233	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_42977323_42977379
ES_00017219	chr14	-	3428	1	Genic_Genomic	ENSMUSG00000090389.3	novel	NA	NA	NA	NA	272	2165	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGATGGCAAATCTAACCA	NA	False	NA	NA	False	AATAAA	-28	NA	42979656	42976228	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_42976200_42979700
ES_00017221	chr14	-	1129	4	FSM	ENSMUSG00000072595.4	ENSMUST00000100688.3	1287	4	0	158	0	-158	multi-exon	TRUE	canonical	1	2	junction_1	2.49443825784929	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTGTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	44408828	44400783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_44401420_44406622_44406755_44407738_44407902_44408630
ES_00017222	chr14	-	1072	2	FSM	ENSMUSG00000115536.2	ENSMUST00000226371.2	1072	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	44549657	44463673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_44464468_44549379
ES_00017223	chr14	-	1550	5	FSM	ENSMUSG00000072574.5	ENSMUST00000227180.2	1586	5	36	0	36	0	multi-exon	FALSE	canonical	0	0	junction_2	0.866025403784439	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	44772780	44709972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_44710757_44714789_44714972_44716348_44716512_44717238_44717371_44772491
ES_00017224	chr14	-	67905	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	6624	18618	6624	-18618	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCCTTGGCAGAGTTG	NA	False	NA	NA	False	AAAAAG	-31	NA	44868034	44800129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_44800100_44868000
ES_00017225	chr14	-	5045	21	FSM	ENSMUSG00000021830.15	ENSMUST00000139526.9	5045	21	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_19	5.21152568831815	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	45456882	45370921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45373431_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
ES_00017227	chr14	-	4420	16	FSM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	0	-2	0	2	multi-exon	FALSE	canonical	2	315	junction_8	121.531596257471	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTGGTCAGTTAC	NA	False	NA	91	True	AATAAA	-22	NA	45556029	45520541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45533428_45533441_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
ES_00017228	chr14	-	982	6	NNC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	2	190	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	467.312058479128	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTGCACCATTTCTCA	NA	False	NA	NA	False	CATAAA	-31	NA	45626238	45615420	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_45615944_45618389_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ES_00017233	chr14	-	3293	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767575	45696251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ES_00017235	chr14	-	9595	14	FSM	ENSMUSG00000037697.20	ENSMUST00000087320.13	9820	14	0	225	0	-225	multi-exon	TRUE	canonical	3	27	junction_12	30.2633412313513	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGCAACAAACCAGTGAC	NA	False	NA	NA	False	NA	NA	NA	45895518	45826151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45860297_45860400_45867036_45867211_45894678
ES_00017237	chr14	-	7812	12	FSM	ENSMUSG00000037697.20	ENSMUST00000129599.8	2802	12	-3462	-1548	-3462	0	multi-exon	FALSE	canonical	3	38	junction_11	23.0350074939848	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGCTGAGTCTCTTGAG	NA	False	NA	-3	True	ATTAAA	-20	NA	45864109	45830630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45860297
ES_00017239	chr14	-	309	1	FSM	ENSMUSG00000084276.2	ENSMUST00000121261.2	471	1	196	-34	196	34	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAAAGAAAGAAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	46095807	46095498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_46095500_46095800
ES_00017240	chr14	-	328	2	Antisense	novelGene_ENSMUSG00000044285.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	25523	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCTTGCCGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	46322178	46321622	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_46321787_46322014
ES_00017241	chr14	-	2058	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	6	0	6	0	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	6371	False	NA	NA	False	AATAAA	-25	NA	46628120	46620976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
ES_00017242	chr14	-	1538	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	0	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025868	47013023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ES_00017243	chr14	-	4171	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTTTTATTTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	47059699	47045605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
ES_00017244	chr14	-	280	3	FSM	ENSMUSG00000062014.14	ENSMUST00000228065.2	280	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059613	47049130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47049281_47051700_47051775_47059557
ES_00017245	chr14	-	2596	1	FSM	ENSMUSG00000062014.14	ENSMUST00000226842.2	2596	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAGAAAAAAGTCCATAT	NA	False	NA	NA	False	AGTAAA	-6	NA	47055250	47052654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47052700_47055200
ES_00017247	chr14	-	4260	25	FSM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_11	68.6814304516795	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514289	47478400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
ES_00017248	chr14	-	4174	25	FSM	ENSMUSG00000037572.18	ENSMUST00000111792.9	4174	25	0	0	0	0	multi-exon	FALSE	canonical	1	22	junction_16	87.7556582537876	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514314	47478400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504520_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
ES_00017249	chr14	-	2962	14	FSM	ENSMUSG00000037572.18	ENSMUST00000111790.2	2962	14	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	24.3235099460311	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAGAATATAAAAA	NA	False	NA	NA	False	NA	NA	NA	47514289	47495135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
ES_00017250	chr14	-	2841	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	127	-4	-73	4	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCGCATTGTTAATTC	NA	False	NA	NA	False	NA	NA	NA	47655737	47625231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ES_00017251	chr14	-	2708	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_10	111.61232785134	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAACATTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	47655653	47625244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ES_00017252	chr14	-	4067	17	FSM	ENSMUSG00000037544.15	ENSMUST00000180299.8	4067	17	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_10	53.3282508971558	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATACAAGCCGG	NA	False	NA	NA	False	AATAAA	-9	NA	47655634	47626174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ES_00017253	chr14	-	217	2	Antisense	novelGene_ENSMUSG00000115570.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGCGTGGTTAGAAGTA	NA	False	NA	NA	False	NA	NA	NA	47733483	47727222	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_47727249_47733292
ES_00017254	chr14	-	3112	3	ISM	ENSMUSG00000037526.8	ENSMUST00000042988.7	3450	10	21870	-2	14075	1	3prime_fragment	FALSE	canonical	3	128	junction_2	22.5	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTGTGTCTGTCC	NA	False	NA	-3	True	AATAAA	-15	NA	47784021	47778348	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_47780601_47783084_47783171_47783247
ES_00017256	chr14	-	3805	12	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6172	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	46.0637359383175	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCTGTGTGTGTCTGTC	NA	False	NA	-4	True	AATAAA	-14	NA	47814278	47778349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47813988_47814069_47814201
ES_00017257	chr14	-	4011	13	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6157	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	53.9554214143491	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCTGTGTGTGTCTGTC	NA	False	NA	-4	True	AATAAA	-14	NA	47814263	47778349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47812373_47812595_47813988_47814069_47814201
ES_00017258	chr14	-	378	1	FSM	ENSMUSG00000062081.7	ENSMUST00000180532.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCCAACAACGCCAATGG	NA	False	NA	NA	False	NA	NA	NA	48317209	48316831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_48316800_48317200
ES_00017260	chr14	-	2178	4	FSM	ENSMUSG00000021848.17	ENSMUST00000118578.9	2144	4	-31	-3	-31	1	multi-exon	FALSE	canonical	2	4	junction_3	16.8720676464584	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTCTAGTTTAATTTT	NA	False	NA	0	True	ATTAAA	-17	NA	48902594	48895132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_48896784_48898755_48898908_48899900_48900117_48902435
ES_00017264	chr14	-	271	1	FSM	ENSMUSG00000115624.2	ENSMUST00000226647.2	4640	1	4628	-259	4628	259	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	49261398	49261127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_49261100_49261400
ES_00017265	chr14	-	442	1	FSM	ENSMUSG00000021852.15	ENSMUST00000227634.2	755	1	313	0	313	0	mono-exon	FALSE	NA	NA	NA	NA	NA	632	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTGTTTTGTTGGTT	NA	False	NA	NA	False	AATAAA	-19	NA	49536417	49535975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_49536000_49536400
ES_00017267	chr14	-	5232	2	Intergenic	novelGene_1262	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATCAAAGCTCAAATTTTA	NA	False	NA	NA	False	NA	NA	NA	49846589	49839827	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_49843245_49844774
ES_00017272	chr14	-	2809	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	-53	-390	-29	390	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTTTTTAGTAGGGCAA	NA	False	NA	NA	False	NA	NA	NA	51023005	51012516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
ES_00017275	chr14	-	1509	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
ES_00017276	chr14	-	1552	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	24	-3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTCTTTTCTTTTT	8900	False	NA	-2	True	AATAAA	-17	NA	51033161	51026707	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
ES_00017277	chr14	-	325	1	FSM	ENSMUSG00000092837.3	ENSMUST00000175096.3	319	1	0	-6	0	6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATCGAGATCCTTTTGG	5444	False	NA	NA	False	NA	NA	NA	51045224	51044899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51044900_51045200
ES_00017281	chr14	-	3127	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	0	261	0	-261	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCACTTAAATATATAAGC	NA	False	NA	NA	False	NA	NA	NA	51162350	51151311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ES_00017283	chr14	-	1465	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	295.870647412007	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168269	51164671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
ES_00017286	chr14	-	1594	7	FSM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	212.437441772082	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168313	51164671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168090
ES_00017291	chr14	-	211	1	Intergenic	novelGene_1265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGCTTTCTTACAAAAC	NA	False	NA	NA	False	NA	NA	NA	51226409	51226198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_51226200_51226400
ES_00017292	chr14	-	765	2	FSM	ENSMUSG00000035896.6	ENSMUST00000080126.4	992	2	1	226	1	-226	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTGACTTTAGAAAACA	NA	False	NA	NA	False	AATGAA	-43	NA	51384241	51382680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51383377_51384172
ES_00017293	chr14	-	2089	16	NIC	ENSMUSG00000004558.16	novel	2099	16	NA	NA	144	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	53.8547016414434	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTGTTAATCCGGGTC	NA	False	NA	-9	True	AATAAA	-18	NA	52150158	52142737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150050
ES_00017294	chr14	-	2061	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	56	-14	-2	2	multi-exon	FALSE	canonical	3	127	junction_6	11.1385064766607	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGGTCTGAATGCGCCTG	NA	False	NA	3	True	AATAAA	-30	NA	52150889	52142725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
ES_00017295	chr14	-	2101	16	FSM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	0	-2	0	2	multi-exon	TRUE	canonical	3	23	junction_14	42.8779145429854	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGGTCTGAATGCGCCTG	NA	False	NA	3	True	AATAAA	-30	NA	52150887	52142725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150779
ES_00017296	chr14	-	2140	16	NIC	ENSMUSG00000004558.16	novel	2099	16	NA	NA	15	2	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	50.5896783499911	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTGTTAATCCGGGTC	9388	False	NA	-9	True	AATAAA	-18	NA	52151539	52142737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52151380
ES_00017297	chr14	-	2110	15	NIC	ENSMUSG00000004558.16	novel	2103	15	NA	NA	3	2	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	33.5830526988156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTGTTAATCCGGGTC	9376	False	NA	-9	True	AATAAA	-18	NA	52151551	52142737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52151380
ES_00017299	chr14	-	2806	5	FSM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	0	-2	0	2	multi-exon	FALSE	canonical	3	80	junction_4	128.961961446002	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGCCTGTGTTTC	5765	False	NA	0	True	AATAAA	-27	NA	52252039	52243531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52251962
ES_00017300	chr14	-	3028	6	FSM	ENSMUSG00000049295.18	ENSMUST00000166169.4	3017	6	0	-11	0	2	multi-exon	FALSE	canonical	3	13	junction_5	162.277540035582	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGCCTGTGTTTC	5739	False	NA	0	True	AATAAA	-27	NA	52257145	52243531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252510_52256951
ES_00017302	chr14	-	2819	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	-7	0	2	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGCCTGTGTTTC	4726	False	NA	0	True	AATAAA	-27	NA	52258158	52243531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
ES_00017303	chr14	-	2940	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	0	-7	0	2	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGCCTGTGTTTC	4694	False	NA	0	True	AATAAA	-27	NA	52258190	52243531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
ES_00017306	chr14	-	2749	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	36	-168	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8784	False	NA	-31	True	AATAAA	-22	NA	52341426	52310833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ES_00017307	chr14	-	2847	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ES_00017308	chr14	-	2820	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1223.61628639314	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTTGGTATATACATC	8725	False	NA	-32	True	AATAAA	-21	NA	52341485	52310834	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ES_00017309	chr14	-	2498	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAAATGGCTTTTA	8754	False	NA	NA	False	GGGGCT	-20	NA	52341456	52311132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ES_00017310	chr14	-	1684	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	0	-1	0	0	multi-exon	FALSE	canonical	3	633	junction_2	1099.6436638748	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8750	False	NA	-17	True	AATAAA	-21	NA	52341460	52311908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ES_00017311	chr14	-	2467	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	0	-776	0	0	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAAATGGCTTTTA	8746	False	NA	NA	False	GGGGCT	-20	NA	52341464	52311132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ES_00017312	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8784	False	NA	42	True	AATAAA	-18	NA	52341426	52312255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ES_00017313	chr14	-	2535	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	39	True	AATAAA	-15	NA	52341461	52312258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
ES_00017316	chr14	-	755	3	FSM	ENSMUSG00000060373.16	ENSMUST00000228815.2	755	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	926	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTCTGATGTGGAGGC	8760	False	NA	NA	False	NA	NA	NA	52341450	52321728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52321849_52335471_52336002_52341345
ES_00017318	chr14	-	4685	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	0	-12	0	12	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCATTTCTTTGCAGTTTC	NA	False	NA	11	True	NA	NA	NA	52434873	52397858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ES_00017321	chr14	-	8551	38	FSM	ENSMUSG00000053754.15	ENSMUST00000200169.6	8509	38	-42	0	-42	0	multi-exon	FALSE	canonical	3	26	junction_15	11.5591027376411	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTCTTCCTATGTTCTG	389	False	NA	-9	True	AATAAA	-17	NA	52495279	52435607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450177_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
ES_00017322	chr14	-	3573	5	FSM	ENSMUSG00000053754.15	ENSMUST00000226681.2	3695	5	122	0	122	0	multi-exon	FALSE	canonical	3	51	junction_4	2.54950975679639	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAAAAACTTG	NA	False	NA	NA	False	NA	NA	NA	52444515	52435906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52436610_52439087_52440075_52441333_52441637_52441889_52443262_52444307
ES_00017324	chr14	-	2906	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTCATTTCTGAC	NA	False	NA	1	True	ATTAAA	-27	NA	52517002	52499215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
ES_00017325	chr14	-	2791	8	NNC	ENSMUSG00000022159.17	novel	2906	8	NA	NA	-1	1	intron_retention	FALSE	canonical	1	1	junction_5	51.2269858730011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTATTTCATGTGTCATT	NA	False	NA	-5	True	ATTAAA	-21	NA	52516797	52499221	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506554_52512899_52512968_52516370_52516443_52516652
ES_00017326	chr14	-	2025	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCTTTCCACTTAGTG	NA	False	NA	-16	True	AATAAA	-39	NA	52542585	52532297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ES_00017327	chr14	-	1470	1	FSM	ENSMUSG00000022160.19	ENSMUST00000197394.2	1504	1	0	34	0	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGACCCTGCCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	52542581	52541111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52541100_52542600
ES_00017331	chr14	-	1769	1	FSM	ENSMUSG00000115785.2	ENSMUST00000228343.2	1768	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTGGAGGTCTAGGAG	NA	False	NA	NA	False	AATAAA	-35	NA	53100209	53098440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_53098400_53100200
ES_00017335	chr14	-	872	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	0	6	0	-6	multi-exon	FALSE	canonical	3	1530	junction_1	8	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATTCGTTCCTTCATG	NA	False	NA	-17	True	ATTAAA	-18	NA	54491561	54472941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54473171_54480155_54480326_54491088
ES_00017336	chr14	-	2378	14	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	0	-397	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.1907576685323	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAATGGACTTGGAAGAT	NA	False	NA	NA	False	NA	NA	NA	54655237	54607298	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650184_54650242_54651024_54651105_54651336_54651471_54654045_54654228_54654833
ES_00017337	chr14	-	2126	11	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-143	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_9	44.7447203589429	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655380	54606898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655357
ES_00017338	chr14	-	2320	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-141	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_10	53.460785212673	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655378	54606898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54651336_54651471_54654045_54654228_54655357
ES_00017340	chr14	-	2647	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	44	0	-11	0	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCTGCTTCTTTCTGCCT	4739	False	NA	-11	True	AATAAA	-25	NA	54754938	54744643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ES_00017341	chr14	-	1032	5	FSM	ENSMUSG00000023110.13	ENSMUST00000133552.8	1692	5	0	660	0	-2	multi-exon	FALSE	canonical	3	685	junction_3	82.0895090739371	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCCACAAGGGTTCTG	4750	False	NA	NA	False	NA	NA	NA	54754927	54752053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54752104_54752231_54752345_54752759_54752895_54753562_54754073_54754703
ES_00017343	chr14	-	1590	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	0	-3	0	3	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTCATTTTTCCTTGG	NA	False	NA	2	True	AATAAA	-23	NA	54791818	54779238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
ES_00017346	chr14	-	3410	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	0	-13	0	13	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGTTCTTCTTTGCTGT	NA	False	NA	7	True	AGTAAA	-31	NA	54815015	54804915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
ES_00017347	chr14	-	2599	7	FSM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	75	-4	75	4	multi-exon	FALSE	canonical	3	19	junction_6	4.10960933531265	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTGGGCTTAGTGGCA	NA	False	NA	3	True	NA	NA	NA	54843375	54821115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570_54833409_54843259
ES_00017348	chr14	-	899	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8624	False	NA	-17	True	AATAAA	-18	NA	54855479	54851575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54851939_54853971_54854279_54855250
ES_00017349	chr14	-	2500	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	0	-6	0	0	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3757	False	NA	0	True	AATAAA	-25	NA	54891139	54879617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
ES_00017352	chr14	-	2399	12	FSM	ENSMUSG00000022185.20	ENSMUST00000141453.8	2381	12	-18	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	154.04743285835	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3754	False	NA	0	True	AATAAA	-25	NA	54891142	54879617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884291_54885544_54885588_54889173_54889316_54890991
ES_00017355	chr14	-	2926	14	NIC	ENSMUSG00000022185.20	novel	4048	18	NA	NA	0	1	intron_retention	FALSE	canonical	3	99	junction_9	142.430632966018	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCCTTTCCTTGGGA	6784	False	NA	1	True	AATAAA	-26	NA	54902134	54879616	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828
ES_00017356	chr14	-	4735	19	FSM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	154.301732625911	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	2630	False	NA	0	True	AATAAA	-25	NA	54924388	54879617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
ES_00017357	chr14	-	4300	18	FSM	ENSMUSG00000022185.20	ENSMUST00000111484.9	4048	18	316	-568	0	1	multi-exon	FALSE	canonical	3	59	junction_15	148.725217469731	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCCTTTCCTTGGGA	2946	False	NA	1	True	AATAAA	-26	NA	54924072	54879616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
ES_00017358	chr14	-	4786	19	FSM	ENSMUSG00000022185.20	ENSMUST00000147714.8	4383	19	-402	-1	-87	0	multi-exon	FALSE	canonical	3	51	junction_16	159.32330861072	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	2543	False	NA	0	True	AATAAA	-25	NA	54924475	54879617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
ES_00017367	chr14	-	394	2	Intergenic	novelGene_1275	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGGATTAAAGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	55117017	55082752	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_55082959_55116829
ES_00017370	chr14	-	3447	6	FSM	ENSMUSG00000022203.8	ENSMUST00000022813.8	2705	6	-836	94	-624	4	multi-exon	TRUE	canonical	3	20	junction_2	3.32264954516723	454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTTCTTGAAAGCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	55164207	55154085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55154990_55156785_55156876_55157151_55157872_55157961_55158103_55158359_55158639_55162894
ES_00017373	chr14	-	2673	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_4	12.8308372870802	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344050	55336306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
ES_00017382	chr14	-	812	11	FSM	ENSMUSG00000079197.11	ENSMUST00000111378.10	795	11	0	-17	0	16	multi-exon	FALSE	canonical	2	23	junction_10	298.855818079555	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGAGCCTCTGGTGTCTA	NA	False	NA	NA	False	AATAAA	-37	NA	55828558	55824881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
ES_00017387	chr14	-	2517	6	FSM	ENSMUSG00000002320.16	ENSMUST00000122358.8	2517	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	133.851260733696	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	4740	False	NA	51	True	AATAAA	-19	NA	55881263	55873421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880838
ES_00017388	chr14	-	2382	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTTGAACTTTTTA	5206	False	NA	-44	True	ATTAAA	-22	NA	55880797	55873516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
ES_00017389	chr14	-	2271	2	FSM	ENSMUSG00000002320.16	ENSMUST00000127473.2	2271	2	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAGTAAAAATAGCG	5175	False	NA	NA	False	NA	NA	NA	55880828	55877552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55879046_55880050
ES_00017390	chr14	-	1735	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	0	-2	0	2	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTAAGCTGTATCTGCT	2285	False	NA	-6	True	AATAAA	-31	NA	55897965	55895333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ES_00017393	chr14	-	516	4	FSM	ENSMUSG00000010376.16	ENSMUST00000228414.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	873.770501269578	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGGTGCAGTGTTCCTG	NA	False	NA	-134	True	NA	NA	NA	55909334	55899842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55900083_55900871_55900955_55901268_55901379_55909251
ES_00017394	chr14	-	435	4	FSM	ENSMUSG00000007589.10	ENSMUST00000226819.2	435	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	180.474067081365	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55917532	55912145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55912363_55916970_55917063_55917322_55917388_55917471
ES_00017395	chr14	-	2956	9	FSM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_6	40.8281459290034	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAAGTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	55919277	55915322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ES_00017398	chr14	-	2864	15	FSM	ENSMUSG00000022218.17	ENSMUST00000168729.8	2852	15	0	-12	0	12	multi-exon	FALSE	canonical	3	23	junction_14	53.0521499304684	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGGAGTCACATTGTGC	398	False	NA	14	True	AATAAA	-37	NA	55950949	55937453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950744
ES_00017399	chr14	-	2753	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	0	-23	0	-2	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTAGGCCAAGAAGTATG	396	False	NA	0	True	AATAAA	-45	NA	55950951	55937467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
ES_00017400	chr14	-	2870	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	12	0	-12	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTGACAAACTGTTCTG	NA	False	NA	NA	False	ATTAAA	-6	NA	55959659	55952884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ES_00017401	chr14	-	1900	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	6	-20	0	0	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGCCCTGACAACACTT	NA	False	NA	1	True	AATAAA	-39	NA	55959714	55953761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
ES_00017403	chr14	-	1479	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	0	-2	0	2	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTCTCATTCTGTAT	NA	False	NA	2	True	AATAAA	-22	NA	55983147	55976474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
ES_00017406	chr14	-	2136	9	ISM	ENSMUSG00000022221.15	ENSMUST00000022830.14	1892	10	-8	-1	-8	1	intron_retention	FALSE	canonical	3	118	junction_2	9.25928587959136	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCTGAGGTGTCAATCC	NA	False	NA	0	True	AATAAA	-21	NA	56026330	56022450	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694
ES_00017417	chr14	-	4353	17	NIC	ENSMUSG00000064128.9	novel	4756	18	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	11.6039796513955	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTTTTACATTCTTTG	2379	False	NA	NA	False	AATAAA	-43	NA	56809316	56764219	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809194
ES_00017418	chr14	-	4082	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	32	0	-32	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAATCATATAATAAAGA	NA	False	NA	NA	False	TTTAAA	-38	NA	57015773	56958198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
ES_00017419	chr14	-	5360	8	FSM	ENSMUSG00000040123.18	ENSMUST00000173954.3	5357	8	0	-3	0	0	multi-exon	FALSE	canonical	2	5	junction_7	29.0123126571166	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTGGTGAAAATGAGAT	9073	False	NA	-10	True	AATAAA	-31	NA	57048921	57028041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57048790
ES_00017420	chr14	-	5354	8	FSM	ENSMUSG00000040123.18	ENSMUST00000111285.9	5351	8	0	-3	0	0	multi-exon	FALSE	canonical	3	22	junction_6	24.4798959581623	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTGGTGAAAATGAGAT	8821	False	NA	-10	True	AATAAA	-31	NA	57049173	57028041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
ES_00017421	chr14	-	5210	7	NIC	ENSMUSG00000040123.18	novel	2455	7	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATTCTTTGGTGAAAAT	8840	False	NA	-15	True	AATAAA	-26	NA	57049154	57028046	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
ES_00017425	chr14	-	1496	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	1	0	-1	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACAATCTATTTCTACA	NA	False	NA	36	True	AATAAA	-15	NA	57635986	57512450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
ES_00017426	chr14	-	787	4	FSM	ENSMUSG00000021947.12	ENSMUST00000225765.2	899	4	0	112	0	-112	multi-exon	FALSE	canonical	0	0	junction_1	10.3387082795139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCCAGGGATTTTAAGGT	NA	False	NA	NA	False	GATAAA	-32	NA	57635953	57579192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57579656_57600378_57600506_57620214_57620323_57635864
ES_00017427	chr14	-	859	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	-13	-10	-13	9	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTTGAGATTCTTACAC	NA	False	NA	1	True	AATAAA	-29	NA	57809039	57787044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ES_00017428	chr14	-	404	4	FSM	ENSMUSG00000021951.8	ENSMUST00000225504.2	457	4	53	0	53	0	multi-exon	TRUE	canonical	1	1	junction_3	112.661735592288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTGCCTGAGAGAATCG	NA	False	NA	NA	False	NA	NA	NA	57807333	57787955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57788100_57795490_57795574_57803378_57803542_57807319
ES_00017429	chr14	-	206	2	Intergenic	novelGene_1289	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	3346	junction_1	0	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGAAGATAGCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	57802777	57801076	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_57801230_57802724
ES_00017431	chr14	-	219	1	Intergenic	novelGene_1290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	271	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCACCAAGGCAGAAATAA	NA	False	NA	NA	False	AAGAAA	-1	NA	57804695	57804476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_57804500_57804700
ES_00017433	chr14	-	2323	16	FSM	ENSMUSG00000021952.17	ENSMUST00000174152.8	2323	16	0	0	0	0	multi-exon	FALSE	canonical	2	67	junction_14	84.0890004697404	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAGAAGAGAAAGGTAAG	NA	False	NA	NA	False	NA	NA	NA	57902449	57834446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57880791_57880947_57885875_57885982_57902344
ES_00017438	chr14	-	5194	8	FSM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	0	-3	0	3	multi-exon	FALSE	canonical	2	5	junction_5	7.14856914468389	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGGTGTTTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	57983580	57927115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372_57934956_57936714_57938016_57940378_57940512_57971334_57971876_57983346
ES_00017440	chr14	-	2260	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063620	58044017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
ES_00017443	chr14	-	5186	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAAATCTGTTACAGGTG	NA	False	NA	58	True	NA	NA	NA	58127733	58070159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ES_00017444	chr14	-	370	4	FSM	ENSMUSG00000021969.9	ENSMUST00000224133.2	299	4	0	-71	0	71	multi-exon	FALSE	canonical	3	16	junction_2	111.212509288399	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTAATTCTCATCTGGTT	NA	False	NA	NA	False	NA	NA	NA	58080763	58076546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_58076663_58077007_58077053_58078285_58078376_58080644
ES_00017446	chr14	-	2307	12	NNC	ENSMUSG00000021973.10	novel	2329	12	NA	NA	18	-1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	96.776559555188	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTCTCTCATCCATT	NA	False	NA	-2	True	NA	NA	NA	58236701	58153718	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_58154833_58156279_58156435_58156800_58156910_58161396_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
ES_00017447	chr14	-	1045	8	NIC	ENSMUSG00000021973.10	novel	2329	12	NA	NA	18	170	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	112.11946980879	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTTTTGTACGTGTCT	NA	False	NA	NA	False	AAAACA	-41	NA	58236701	58161232	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58191592_58191669_58192455_58192488_58209107_58209247_58236486
ES_00017448	chr14	-	985	8	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	3	10723	3	-3038	5prime_fragment	FALSE	canonical	3	276	junction_1	23.3168065864036	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATATTTATT	NA	False	NA	NA	False	NA	NA	NA	58236716	58164440	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
ES_00017449	chr14	-	1306	11	Fusion	ENSMUSG00000068245.15_ENSMUSG00000044703.6	novel	1130	10	NA	NA	-5102	-50	multi-exon	FALSE	canonical	0	0	junction_1	110.872900205596	63	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAGATTGCCAATATTT	NA	False	NA	NA	False	NA	NA	NA	59608021	59514411	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_59514682_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ES_00017451	chr14	-	2885	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5096	210	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	233	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAACTTGTTGATTTTTGT	NA	False	NA	NA	False	AATAAA	-33	NA	59608015	59584645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ES_00017452	chr14	-	3039	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5075	215	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	84	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTGATTTTTGTTATTG	NA	False	NA	NA	False	AATAAA	-38	NA	59607994	59584640	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ES_00017454	chr14	-	3459	10	FSM	ENSMUSG00000091144.3	ENSMUST00000166912.3	3459	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	39.3938642837927	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGAGTTCACAGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59632830	59618281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_59618597_59618766_59618934_59620759_59620832_59622232_59622365_59622915_59622980_59623729_59623798_59624795_59624846_59626717_59626849_59628314_59628423_59630478
ES_00017455	chr14	-	3888	24	Fusion	ENSMUSG00000091144.3_ENSMUSG00000071350.13	novel	2995	14	NA	NA	0	0	multi-exon	FALSE	canonical	2	9	junction_10	49.6814807288411	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGAGTTCACAGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59678322	59618281	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_59618597_59618766_59618934_59620759_59620832_59622232_59622365_59622915_59622980_59623729_59623798_59624795_59624846_59626717_59626849_59628314_59628423_59630478_59630601_59639782_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
ES_00017456	chr14	-	3019	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	0	-24	0	24	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATGCTCCAAAGGACC	NA	False	NA	NA	False	TATAAA	-37	NA	59678333	59639433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
ES_00017459	chr14	-	2225	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	9	-32	0	32	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTTGTTGTTGTTGT	NA	False	NA	0	True	NA	NA	NA	59835384	59801392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ES_00017460	chr14	-	2876	9	ISM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	9	3669	0	84	5prime_fragment	FALSE	canonical	3	45	junction_4	30.7954440623934	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGGTCAGCATGTCTCA	NA	False	NA	NA	False	NA	NA	NA	59835384	59805093	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ES_00017461	chr14	-	1917	10	FSM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	-30	5	-15	-5	multi-exon	FALSE	canonical	3	10	junction_1	37.821543276319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGAACAGCTTCATAGT	NA	False	NA	NA	False	AATAAA	-24	NA	59835423	59805182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ES_00017462	chr14	-	2646	5	FSM	ENSMUSG00000021982.15	ENSMUST00000225103.2	2579	5	11	-78	0	78	multi-exon	FALSE	canonical	3	110	junction_3	7.29297607290741	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGACTGTCACTTGG	NA	False	NA	NA	False	NA	NA	NA	59835384	59821943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ES_00017465	chr14	-	5505	14	FSM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	-90	-2479	-28	140	multi-exon	FALSE	canonical	3	173	junction_1	24.6028814399438	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAATTCTGACTGGACAG	NA	False	NA	NA	False	NA	NA	NA	60488984	60455386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ES_00017466	chr14	-	3913	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488956	60455526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ES_00017467	chr14	-	3993	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	-35	0	-35	0	multi-exon	FALSE	canonical	3	37	junction_9	15.475986974649	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTGATACTTGTTA	NA	False	NA	-26	True	AATACA	-32	NA	61275434	61201323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
ES_00017468	chr14	-	4212	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111234.10	4051	10	0	-161	0	0	multi-exon	FALSE	canonical	3	46	junction_9	13.3813948598441	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTGATACTTGTTA	NA	False	NA	-26	True	AATACA	-32	NA	61283918	61201323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
ES_00017469	chr14	-	911	5	ISM	ENSMUSG00000060548.14	ENSMUST00000224371.2	1239	6	4	22174	4	-22013	5prime_fragment	FALSE	canonical	3	46	junction_4	15.833114033569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTCTAGAAAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	61283935	61233983	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
ES_00017470	chr14	-	639	5	ISM	ENSMUSG00000060548.14	ENSMUST00000225730.2	744	6	-59	22014	0	-22014	5prime_fragment	FALSE	canonical	3	37	junction_4	19.6532440070335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61275399	61233984	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
ES_00017471	chr14	-	858	1	FSM	ENSMUSG00000114642.2	ENSMUST00000223938.2	959	1	278	-177	278	177	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTATTTGTGACTAATTG	NA	False	NA	NA	False	NA	NA	NA	61562981	61562123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61562100_61563000
ES_00017472	chr14	-	9650	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	0	442	0	-442	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACACTTGAGTAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	61597888	61569632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
ES_00017473	chr14	-	4334	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	-265	0	-265	0	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTGAAAGACTTATT	6281	False	NA	-12	True	AATAAA	-22	NA	61677588	61602659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
ES_00017475	chr14	-	3971	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	128	-97	0	97	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTCATTATAAAAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	61794207	61769344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ES_00017476	chr14	-	1459	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTCAGTATTATATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	61794207	61771753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
ES_00017480	chr14	-	511	1	FSM	ENSMUSG00000114488.2	ENSMUST00000224324.2	701	1	149	41	149	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	323	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAATGAGACCCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	62778493	62777982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_62778000_62778500
ES_00017481	chr14	-	220	1	FSM	ENSMUSG00000114571.2	ENSMUST00000223790.2	196	1	60	-84	60	84	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTAATAGCTTGTATC	NA	False	NA	NA	False	AAAACA	-43	NA	62778964	62778744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_62778700_62779000
ES_00017482	chr14	-	10883	18	FSM	ENSMUSG00000035161.8	ENSMUST00000223585.2	10883	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	114.295797874483	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGTCATTGAGTGG	NA	False	NA	NA	False	TTTAAA	-5	NA	62998561	62923252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ES_00017483	chr14	-	6285	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	90	-4511	at_least_one_novel_splicesite	FALSE	canonical	3	358	junction_3	52.091548371734	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCACCTTGGCTTGATTT	NA	False	NA	-1	True	AATAAA	-28	NA	62998471	62927763	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ES_00017484	chr14	-	6375	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	0	-4502	intron_retention	FALSE	canonical	3	165	junction_3	83.8071604244429	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTGATTTTTTTAATCT	NA	False	NA	8	True	AATAAA	-37	NA	62998582	62927754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ES_00017485	chr14	-	6361	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	0	-4513	intron_retention	FALSE	canonical	3	25	junction_12	129.812961002708	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCCACCTTGGCTTGAT	NA	False	NA	-3	True	AATAAA	-26	NA	62998582	62927765	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ES_00017489	chr14	-	1873	5	FSM	ENSMUSG00000035121.7	ENSMUST00000038229.5	1932	5	56	3	40	-3	multi-exon	FALSE	canonical	0	0	junction_2	2.04633819296811	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCAAAGGTGGTGTTTTGT	7141	False	NA	-8	True	AATAAA	-30	NA	63430934	63419894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_63421014_63423486_63423684_63425889_63426231_63429153_63429308_63430872
ES_00017490	chr14	-	1766	2	ISM	ENSMUSG00000021944.16	ENSMUST00000121312.2	2407	6	11994	-2	11994	0	3prime_fragment	FALSE	canonical	3	20	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCGAAGTCTTTTCTAA	NA	False	NA	NA	False	AATAAA	-19	NA	63439062	63436370	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_63438001_63438926
ES_00017491	chr14	-	1602	5	ISM	ENSMUSG00000021944.16	ENSMUST00000118022.8	3374	7	-38	4414	-15	-4412	5prime_fragment	FALSE	canonical	3	8	junction_3	2.17944947177034	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATAAATCTAAGACGCC	NA	False	NA	NA	False	NA	NA	NA	63482735	63440784	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_63440848_63441107_63441234_63442037_63442205_63477984_63479095_63482599
ES_00017492	chr14	-	2108	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	-227	0	-227	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746768	63729795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ES_00017494	chr14	-	619	3	FSM	ENSMUSG00000021953.15	ENSMUST00000170772.2	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	3066	junction_1	56	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGATGTTTACCTCACTG	NA	False	NA	NA	False	NA	NA	NA	63734588	63733067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_63733342_63733438_63733589_63734393
ES_00017497	chr14	-	2570	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTGTGTGCCCTAGA	NA	False	NA	90	True	GATAAA	-16	NA	63781431	63760925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
ES_00017498	chr14	-	1333	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14995	-4	9	4	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTGCTGTGAGTCTGTC	NA	False	NA	0	True	AATAAA	-24	NA	64678357	64360069	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
ES_00017500	chr14	-	3398	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	0	-2	0	2	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTCCGGGATTTCTTT	7685	False	NA	NA	False	AATAAA	-16	NA	65187299	65049046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
ES_00017502	chr14	-	5948	6	NIC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	-67	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_5	51.808879547815	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGAGGTGTTTTGTTA	NA	False	NA	0	True	NA	NA	NA	65335622	65289508	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65335445
ES_00017505	chr14	-	2856	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	0	-5	0	5	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGGTGCTTTTTCCC	3444	False	NA	NA	False	AATAAA	-21	NA	65830524	65767892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
ES_00017506	chr14	-	3388	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	86	-561	0	561	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGTACTGGTTTATTGT	6430	False	NA	0	True	NA	NA	NA	66071357	66055925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
ES_00017510	chr14	-	2263	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCTTGAGGAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	66246656	66224234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
ES_00017512	chr14	-	3910	31	FSM	ENSMUSG00000059456.14	ENSMUST00000022622.14	4034	31	121	3	51	-2	multi-exon	FALSE	canonical	2	2	junction_25	4.30103346753881	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTTGACTGTGTCGGTT	NA	False	NA	-2	True	ATTAAA	-23	NA	66518380	66390708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040_66416096_66416279_66416343_66424891_66424972_66427022_66427111_66427504_66427684_66450760_66451002_66518331
ES_00017513	chr14	-	765	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	0	-1	0	1	multi-exon	FALSE	canonical	3	12	junction_1	2	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGGCAAGGCCTTACT	NA	False	NA	NA	False	TTTAAA	-41	NA	66534578	66532781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_66533036_66533403_66533594_66534257
ES_00017514	chr14	-	507	1	FSM	ENSMUSG00000114829.2	ENSMUST00000223821.2	523	1	-17	33	-17	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGACATAAAGTACCAGTA	NA	False	NA	NA	False	NA	NA	NA	67035844	67035337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_67035300_67035800
ES_00017515	chr14	-	2015	2	NNC	ENSMUSG00000022048.9	novel	4520	14	NA	NA	63790	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTGTCTGTATTGAGA	NA	False	NA	-1	True	AATAAA	-20	NA	67042347	67040312	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_67041964_67041983
ES_00017517	chr14	-	4010	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGACTTCATAATAACT	NA	False	NA	NA	False	AATAAA	-22	NA	67309893	67251504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
ES_00017518	chr14	-	3375	11	NNC	ENSMUSG00000022052.10	novel	4010	10	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	non_canonical	3	285	junction_10	142.73475400196	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAATTTGTATTTAAACA	NA	False	NA	-4	True	AATAAA	-25	NA	67309893	67252118	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538_67309797_67309817
ES_00017519	chr14	-	7064	4	Fusion	ENSMUSG00000048922.19_ENSMUSG00000093726.2	novel	676	5	NA	NA	1082	74712	intron_retention	FALSE	non_canonical	0	0	junction_1	247.958777936083	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACTACCAGGCAAATGAAA	648	False	NA	NA	False	NA	NA	NA	67933101	67835913	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_67835944_67910633_67915472_67917610_67917780_67931074
ES_00017520	chr14	-	5055	1	FSM	ENSMUSG00000093726.2	ENSMUST00000175674.2	1930	1	-3128	3	-3128	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTCCTGTGTCTGGGC	NA	False	NA	-5	True	NA	NA	NA	67915683	67910628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_67910600_67915700
ES_00017521	chr14	-	3865	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	0	-24	0	0	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGGTAATCTGAGTTTC	NA	False	NA	-10	True	ATTAAA	-40	NA	67953059	67913779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
ES_00017522	chr14	-	3604	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	125.363145969407	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCCAGATTGTTCAAAT	NA	False	NA	-33	True	ATTAAA	-17	NA	67952824	67913802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_67915472_67917610_67917780_67931074_67931201_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
ES_00017523	chr14	-	3613	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	35	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	124.651514230674	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCCAGATTGTTCAAAT	NA	False	NA	-33	True	ATTAAA	-17	NA	67953095	67913802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
ES_00017524	chr14	-	3610	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	35	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	137.085274369567	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCCAGATTGTTCAAAT	NA	False	NA	-33	True	ATTAAA	-17	NA	67953095	67913802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_67915472_67917610_67917780_67931074_67931201_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
ES_00017525	chr14	-	1124	8	FSM	ENSMUSG00000048922.19	ENSMUST00000124045.3	1124	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_7	96.2078956410204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGAAGCAGCACCCCC	NA	False	NA	NA	False	NA	NA	NA	67953130	67937720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
ES_00017526	chr14	-	10371	52	FSM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	-267	-116	-257	116	multi-exon	FALSE	canonical	3	67	junction_21	9.78869405661972	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCATTAAAGGAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	68171148	67989467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
ES_00017527	chr14	-	6559	52	NNC	ENSMUSG00000044447.6	novel	9988	52	NA	NA	39463	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_51	14.5111817045914	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGAGTGAATTTTATTG	NA	False	NA	1	True	NA	NA	NA	68131418	67993067	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68131222
ES_00017529	chr14	-	3169	3	FSM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	-95	260	-95	-260	multi-exon	FALSE	canonical	3	13	junction_2	6.5	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGTGTGGTGATGTGTC	NA	False	NA	-1	True	AATAAA	-22	NA	68362390	68356991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_68358834_68360269_68360395_68361188
ES_00017530	chr14	-	4175	4	FSM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	0	-1	0	1	multi-exon	FALSE	canonical	3	26	junction_2	79.79974937304	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTGGGGTCTTTGTGGG	542	False	NA	-3	True	AATAAA	-17	NA	69522561	69479295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69482804_69485029_69485087_69486842_69487072_69522180
ES_00017531	chr14	-	5931	3	FSM	ENSMUSG00000034248.8	ENSMUST00000184497.2	5927	3	0	-4	0	1	multi-exon	FALSE	canonical	3	50	junction_2	78	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTGGGGTCTTTGTGGG	542	False	NA	-3	True	AATAAA	-17	NA	69522561	69479295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69482804_69485029_69487072_69522180
ES_00017533	chr14	-	2071	7	FSM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	-107	-6	-16	5	multi-exon	FALSE	canonical	3	174	junction_3	17.7333646616265	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCGTCCAAGTGCGGTC	NA	False	NA	-1	True	AATAAA	-20	NA	69945049	69934750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502
ES_00017534	chr14	-	1731	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	0	-5	0	5	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCGTCCAAGTGCGGTC	NA	False	NA	-1	True	AATAAA	-20	NA	69945033	69934750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
ES_00017536	chr14	-	2659	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	0	-10	0	10	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTATTCTTAGCTGGTG	NA	False	NA	8	True	ATTAAA	-25	NA	69969983	69954438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ES_00017537	chr14	-	5322	10	FSM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_6	15.5737988261228	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTCTTGTACTGTTT	NA	False	NA	-4	True	AATACA	-19	NA	70043085	70022438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348_70033468_70033722_70034742_70035587_70035774_70037126_70037231_70038066_70038269_70042485
ES_00017539	chr14	-	3896	22	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	-10	20067	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	49.9875267888612	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCTCCCTATTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	70391270	70355545	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_70355746_70375655_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
ES_00017540	chr14	-	3733	21	FSM	ENSMUSG00000033712.7	ENSMUST00000035612.7	3725	21	-10	2	-10	-2	multi-exon	FALSE	canonical	0	0	junction_8	38.4373191052654	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAAGTGTGAGTCTTTGT	NA	False	NA	42	True	AATAAA	-16	NA	70391270	70375618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
ES_00017542	chr14	-	2030	14	FSM	ENSMUSG00000022092.12	ENSMUST00000078434.8	1970	14	-20	-40	-20	7	multi-exon	TRUE	canonical	2	11	junction_1	4.03827838412513	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCTAATTTTAGGAACGA	9166	False	NA	NA	False	NA	NA	NA	70526940	70455306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70455727_70457465_70457496_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
ES_00017543	chr14	-	2767	13	FSM	ENSMUSG00000022092.12	ENSMUST00000228265.2	2494	13	0	-273	0	273	multi-exon	FALSE	canonical	2	5	junction_1	4.93006648591635	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGCCAAAGTTGATGAC	9207	False	NA	NA	False	NA	NA	NA	70526899	70460152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70461381_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
ES_00017544	chr14	-	5109	23	NIC	ENSMUSG00000033644.6	novel	4916	23	NA	NA	0	283	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	9.98511288563344	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTATTTTATTGATTGA	NA	False	NA	NA	False	AATAAA	-10	NA	70666832	70609642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666770
ES_00017545	chr14	-	4916	23	FSM	ENSMUSG00000033644.6	ENSMUST00000048129.6	4916	23	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_22	14.3650747266008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGTCTGAGAGAATATT	NA	False	NA	-14	True	AATAAA	-18	NA	70666543	70609925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666391
ES_00017550	chr14	-	4034	17	FSM	ENSMUSG00000022095.10	ENSMUST00000022690.10	4033	17	0	-1	0	1	multi-exon	FALSE	canonical	3	46	junction_1	11.5851130227547	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGACTCTCCCCAGTC	NA	False	NA	-6	True	AATAAA	-18	NA	70837275	70820734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70822624_70822778_70822880_70823058_70823200_70823514_70823659_70823796_70823888_70824009_70824139_70824245_70824392_70824990_70825181_70825401_70825479_70825701_70825811_70826042_70826240_70826315_70826562_70827568_70827692_70827779_70827885_70829014_70829188_70831408_70831488_70837181
ES_00017551	chr14	-	4989	16	FSM	ENSMUSG00000022099.18	ENSMUST00000022694.17	5418	16	148	281	-106	-281	multi-exon	FALSE	canonical	0	0	junction_3	61.6256079528272	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGAGCTGAGGGCTTAGA	NA	False	NA	NA	False	ACTAAA	-18	NA	70864600	70838983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70842295_70842407_70842489_70842736_70842803_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ES_00017553	chr14	-	2572	15	FSM	ENSMUSG00000022099.18	ENSMUST00000228295.2	2572	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.6262794551225	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCAGTTGTCTTACCTC	NA	False	NA	47	True	NA	NA	NA	70873418	70841062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70842295_70842407_70842489_70842736_70842803_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70873259
ES_00017554	chr14	-	2797	14	NNC	ENSMUSG00000022099.18	novel	2643	16	NA	NA	-106	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	54.765773443168	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864600	70841109	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_70842295_70842407_70842496_70843131_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ES_00017556	chr14	-	1738	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-49	0	-49	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879757	70873642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
ES_00017557	chr14	-	1051	4	ISM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	-14	1742	0	-1742	5prime_fragment	FALSE	canonical	3	35	junction_2	11.4309521329882	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTATATGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	70879708	70875690	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_70876014_70876241_70876387_70878971_70879009_70879162
ES_00017558	chr14	-	4472	28	FSM	ENSMUSG00000022100.15	ENSMUST00000022696.8	4472	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	88.8509332544799	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACATTGGATGGAGAAA	NA	False	NA	NA	False	AATAAA	-37	NA	71003994	70902257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920297_70921095_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
ES_00017561	chr14	-	5739	24	FSM	ENSMUSG00000033487.15	ENSMUST00000162825.8	4100	24	-56	-1583	-56	-1	multi-exon	FALSE	canonical	3	32	junction_23	34.1903931941048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTTTTTGTATTTATA	7089	False	NA	-2	True	AATAAA	-23	NA	72840458	72775386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72840361
ES_00017562	chr14	-	6139	26	FSM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	0	4	0	-4	multi-exon	FALSE	canonical	3	104	junction_25	24.1979833870511	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATATGTTTTTTGTATTT	NA	False	NA	-5	True	AATAAA	-20	NA	72947443	72775389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
ES_00017563	chr14	-	6153	27	NNC	ENSMUSG00000033487.15	novel	6143	26	NA	NA	-14	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_25	50.6331655698249	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATATGTTTTTTGTATTT	NA	False	NA	-5	True	AATAAA	-20	NA	72947457	72775389	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921204_72944116_72944125_72947157
ES_00017567	chr14	-	558	1	FSM	ENSMUSG00000033470.13	ENSMUST00000228154.2	557	1	-5	4	-5	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCAACTTTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	73263604	73263046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_73263000_73263600
ES_00017570	chr14	-	1796	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	73622729	73599665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ES_00017571	chr14	-	3164	3	ISM	ENSMUSG00000033405.5	ENSMUST00000043813.3	3579	5	23014	0	-17	0	3prime_fragment	FALSE	canonical	2	19	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAGAGACTTAATTG	NA	False	NA	NA	False	AATAAA	-21	NA	73762668	73756316	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_73759115_73760737_73760935_73762499
ES_00017572	chr14	-	872	2	Genic_Genomic	ENSMUSG00000075581.6	novel	747	1	NA	NA	-42	74340	multi-exon	FALSE	non_canonical	0	0	junction_1	0	211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTCAGAGTGATGTTA	NA	False	NA	NA	False	NA	NA	NA	74034772	73959643	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_73959689_74033945
ES_00017574	chr14	-	552	1	FSM	ENSMUSG00000057886.6	ENSMUST00000181108.2	552	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTGCATTTATATATAT	NA	False	NA	NA	False	NA	NA	NA	74192991	74192439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_74192400_74193000
ES_00017575	chr14	-	4759	20	FSM	ENSMUSG00000068015.9	ENSMUST00000088970.7	4694	20	-65	0	-55	0	multi-exon	FALSE	canonical	3	34	junction_4	23.7891243570067	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTGGATTGATTGACT	514	False	NA	-1	True	ATTAAA	-20	NA	75185371	74992114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032350_75032432_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
ES_00017576	chr14	-	3125	19	FSM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_17	17.7194355175815	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAAGAGAGCACCCCA	569	False	NA	NA	False	AATAAA	-7	NA	75185316	74993612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
ES_00017579	chr14	-	3561	10	FSM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	32	-5	0	5	multi-exon	FALSE	canonical	3	23	junction_9	8.56348838577675	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTACAGTCATTTTGGG	NA	False	NA	NA	False	AATAAA	-22	NA	76024445	75997551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
ES_00017582	chr14	-	5466	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-66	-11	-66	11	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTTTTTTGTTTTTCT	NA	False	NA	2	True	AATAAA	-28	NA	76348266	76323664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
ES_00017583	chr14	-	938	1	FSM	ENSMUSG00000095427.3	ENSMUST00000095471.6	855	1	-28	-55	-28	55	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAACAAACAAACAAAAAAA	NA	False	NA	NA	False	AATAAA	-29	NA	76475013	76474075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_76474100_76475000
ES_00017585	chr14	-	655	2	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	16733	-4	16367	2	3prime_fragment	FALSE	canonical	3	106	junction_1	0	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTGCGAGTTACCGA	NA	False	NA	0	True	AATAAA	-20	NA	76777565	76770251	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_76770687_76777345
ES_00017588	chr14	-	547	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	-18	-61	-18	61	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATTCCCAGGAAGCCCC	NA	False	NA	NA	False	CATAAA	-11	NA	77489772	77489225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_77489200_77489800
ES_00017591	chr14	-	674	5	FSM	ENSMUSG00000022013.5	ENSMUST00000022590.5	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	265.32856989024	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCCTTCAGAAGAATG	NA	False	NA	-139	True	NA	NA	NA	78112565	78063786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78112237
ES_00017592	chr14	-	9370	12	FSM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	0	-6	0	6	multi-exon	FALSE	canonical	3	18	junction_4	17.0725239604508	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCTTCTTTAGCATCC	NA	False	NA	NA	False	AATAAA	-23	NA	78774248	78729679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740463_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
ES_00017593	chr14	-	4728	32	NNC	ENSMUSG00000034731.12	novel	15257	30	NA	NA	33	283	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_31	8.609580124905	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGGGAATGTTTGTCT	NA	False	NA	NA	False	AGTAAA	-15	NA	78970183	78806765	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_78807598_78813326_78813458_78814888_78814998_78816128_78816249_78818918_78819012_78821814_78821921_78823032_78823197_78824559_78824695_78824962_78825077_78827313_78827422_78832586_78832684_78832816_78832928_78834084_78834203_78836447_78836580_78840465_78840574_78841716_78841991_78844340_78844441_78846948_78847035_78850294_78850380_78853666_78853807_78853918_78854028_78855962_78856123_78857211_78857315_78861816_78861943_78862245_78862353_78865126_78865260_78865500_78865606_78889120_78889202_78891125_78891237_78962346_78962542_78969797_78969925_78969975
ES_00017596	chr14	-	916	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	2	0	2	0	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	False	NA	-11	True	AATAAA	-14	NA	79539083	79526195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
ES_00017597	chr14	-	12730	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	0	493	0	-493	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCGTCTGACCCTGTC	NA	False	NA	NA	False	NA	NA	NA	79628218	79563201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
ES_00017598	chr14	-	2686	20	NNC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_15	48.9853276693114	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGGGGTTTTTTGTTTGT	NA	False	NA	-10	True	AATAAA	-11	NA	79628132	79573075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614878_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
ES_00017599	chr14	-	3704	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGTGTTTGTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	79718960	79697376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ES_00017600	chr14	-	333	1	FSM	ENSMUSG00000036422.11	ENSMUST00000195034.2	4529	1	3655	541	3547	-541	mono-exon	FALSE	NA	NA	NA	NA	NA	680	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTAAGTTATTGACCGG	NA	False	NA	NA	False	NA	NA	NA	80005097	80004764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_80004800_80005100
ES_00017602	chr14	-	724	1	FSM	ENSMUSG00000115743.2	ENSMUST00000227353.2	1458	1	211	523	211	-523	mono-exon	FALSE	NA	NA	NA	NA	NA	1143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACGTGTACAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	84996312	84995588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_84995600_84996300
ES_00017603	chr14	-	4592	28	FSM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	0	-10	0	10	multi-exon	FALSE	non_canonical	0	0	junction_5	42.6759570646689	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTCTCTTGCTCATA	NA	False	NA	NA	False	AATAAA	-34	NA	87378660	86892792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
ES_00017605	chr14	-	890	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-31	-67	-31	67	mono-exon	FALSE	NA	NA	NA	NA	NA	504	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTTATATGAGATTGCAA	NA	False	NA	NA	False	AATAAA	-36	NA	88361275	88360385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_88360400_88361300
ES_00017606	chr14	-	3089	1	FSM	ENSMUSG00000062093.6	ENSMUST00000228705.2	3220	1	147	-16	147	16	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCCTGAATATATATTTA	NA	False	NA	NA	False	AATAAA	-32	NA	90136736	90133647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_90133600_90136700
ES_00017607	chr14	-	451	1	NIC	ENSMUSG00000115313.2	novel	429	3	NA	NA	683	-19996	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAACAAGGAGAAGATG	NA	False	NA	NA	False	NA	NA	NA	90322645	90322194	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_90322200_90322600
ES_00017609	chr14	-	212	1	FSM	ENSMUSG00000115505.2	ENSMUST00000228021.2	999	1	669	118	669	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGGACGAAATGGAATCT	NA	False	NA	NA	False	NA	NA	NA	93432463	93432251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_93432300_93432500
ES_00017610	chr14	-	415	1	FSM	ENSMUSG00000115505.2	ENSMUST00000228021.2	999	1	104	480	104	-480	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGAGAAAGCCTGGGGGT	NA	False	NA	NA	False	NA	NA	NA	93433028	93432613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_93432600_93433000
ES_00017611	chr14	-	734	1	FSM	ENSMUSG00000115379.2	ENSMUST00000227743.2	423	1	365	-676	365	676	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	AATAAA	-20	NA	95522727	95521993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_95522000_95522700
ES_00017613	chr14	-	453	1	FSM	ENSMUSG00000060377.5	ENSMUST00000081987.5	449	1	0	-4	0	4	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTACATGTATGCCT	NA	False	NA	3	True	ATTAAA	-31	NA	99231754	99231301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_99231300_99231800
ES_00017614	chr14	-	2240	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_1	24.5	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGTCCTTTTGATATAC	NA	False	NA	NA	False	AATAAA	-18	NA	99283556	99271979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_99273947_99277950_99278097_99283429
ES_00017617	chr14	-	409	1	FSM	ENSMUSG00000100172.2	ENSMUST00000186660.2	433	1	108	-84	108	84	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	AATAAA	-24	NA	99528964	99528555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_99528600_99529000
ES_00017618	chr14	-	203	1	FSM	ENSMUSG00000115746.2	ENSMUST00000227310.2	336	1	165	-32	165	32	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGCTCTTGTAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-13	NA	99603288	99603085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_99603100_99603300
ES_00017622	chr14	-	238	2	Intergenic	novelGene_1319	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGATTTTCTTGATTAG	NA	False	NA	NA	False	NA	NA	NA	100870834	100863032	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_100863206_100870769
ES_00017623	chr14	-	6480	19	FSM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	0	3	0	-3	multi-exon	FALSE	canonical	3	15	junction_15	4.49553962758753	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTTTTTGCTGTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	101846469	101679798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170_101696330_101700310_101700521_101703036_101703201_101714415_101714643_101716566_101716642_101724863_101724984_101726947_101727059_101727288_101727381_101731781_101731915_101738447_101738553_101742543_101742634_101744523_101745127_101845398
ES_00017625	chr14	-	4907	2	FSM	ENSMUSG00000075486.11	ENSMUST00000227868.2	4907	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTGTGGTGAGCTGACA	NA	False	NA	0	True	NA	NA	NA	101877884	101870416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_101871829_101874389
ES_00017626	chr14	-	1637	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	238	-785	0	0	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTGTGGTGAGCTGACA	NA	False	NA	0	True	NA	NA	NA	101877884	101870416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
ES_00017630	chr14	-	4309	5	FSM	ENSMUSG00000022124.16	ENSMUST00000022720.15	4309	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	52.2894587847302	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTTTGCAAAACTTGT	9813	False	NA	NA	False	AATAAA	-12	NA	103336990	103317674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336597
ES_00017631	chr14	-	3330	5	FSM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	24	-2	0	2	multi-exon	FALSE	canonical	3	110	junction_4	32.5451609306207	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGTATTTTTATAACTT	9946	False	NA	-2	True	AATAAA	-15	NA	103336411	103318467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336204
ES_00017632	chr14	-	4067	5	NIC	ENSMUSG00000022124.16	novel	4309	5	NA	NA	-14	-64	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	68.9759922001851	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGTTTCAGGAAACATCC	9847	False	NA	NA	False	AATAGA	-17	NA	103336956	103317738	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_103320947_103326737_103326910_103329739_103329863_103332772_103332978_103336597
ES_00017633	chr14	-	3320	5	NIC	ENSMUSG00000022124.16	novel	4309	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	68.4945253286713	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	9813	False	NA	-4	True	AATAAA	-13	NA	103336990	103318469	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336791
ES_00017635	chr14	-	1386	2	FSM	ENSMUSG00000022124.16	ENSMUST00000127113.2	922	2	-464	0	-464	0	multi-exon	FALSE	canonical	3	200	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAATTCGCATTGCGGAAC	NA	False	NA	NA	False	NA	NA	NA	103327717	103320540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103320947_103326737
ES_00017637	chr14	-	2613	10	FSM	ENSMUSG00000033004.17	ENSMUST00000161278.2	2613	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	6.77322251294585	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAGAATAAAAAAACA	NA	False	NA	NA	False	AAAAAG	-11	NA	103429051	103392748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103394204_103407292_103407449_103410002_103410126_103411222_103411356_103412201_103412427_103419789_103419931_103422267_103422385_103423019_103423118_103425934_103426051_103429002
ES_00017641	chr14	-	7590	23	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	3633	22	NA	NA	21	0	multi-exon	FALSE	canonical	3	71	junction_2	45.2615904520371	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGTTAATGTTTTAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	105414738	105344186	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_105347239_105350904_105350964_105351555_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00017642	chr14	-	1113	4	FSM	ENSMUSG00000091509.8	ENSMUST00000165350.8	1113	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	13.0213499897497	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTTGGCTTTAATTTT	NA	False	NA	NA	False	ATTAAA	-10	NA	105352112	105346825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_105347239_105349754_105349839_105350904_105350964_105351555
ES_00017646	chr14	-	4212	21	FSM	ENSMUSG00000022119.16	ENSMUST00000163499.2	4212	21	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_13	60.3468309027077	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGAAGTTAATAAAGGT	NA	False	NA	NA	False	AAAACA	-18	NA	105414700	105353570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387845_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00017647	chr14	-	2393	2	FSM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	-306	0	-306	0	multi-exon	FALSE	canonical	3	119	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTTTGTCTTA	NA	False	NA	-4	True	TATAAA	-30	NA	106134559	106129380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_106131236_106134021
ES_00017652	chr14	-	3814	1	FSM	ENSMUSG00000061517.9	ENSMUST00000170662.2	3799	1	-15	0	-15	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTATTTCTTGTTGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	118474457	118470643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_118470600_118474500
ES_00017657	chr14	-	4165	22	FSM	ENSMUSG00000042156.17	ENSMUST00000004055.10	4079	22	-86	0	-13	0	multi-exon	FALSE	canonical	3	20	junction_20	6.55588223176215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCGACTGTGGCTGCTT	NA	False	NA	-6	True	AGTAAA	-14	NA	119162885	119113669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161836_119161931_119162552
ES_00017664	chr14	-	4200	34	NNC	ENSMUSG00000025558.20	novel	8107	55	NA	NA	-55	-3942	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	13.211009127509	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACCCATCCCTGTGACAG	NA	False	NA	NA	False	NA	NA	NA	122035304	121838995	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_121839228_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ES_00017666	chr14	-	4790	2	FSM	ENSMUSG00000041703.8	ENSMUST00000039118.7	4767	2	0	-23	0	23	multi-exon	FALSE	canonical	3	83	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACATCTCTGTCATTCTT	NA	False	NA	-3	True	AATAAA	-36	NA	122703089	122694183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_122697188_122701303
ES_00017667	chr14	-	1076	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	-2	True	ATTAAA	-29	NA	123150574	123128271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_123129229_123137887_123137945_123150512
ES_00017668	chr14	-	1379	3	FSM	ENSMUSG00000041625.16	ENSMUST00000162164.2	609	3	-144	-626	-67	0	multi-exon	TRUE	canonical	3	7	junction_2	16.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	-2	True	ATTAAA	-29	NA	123150641	123128271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_123129229_123137887_123137945_123150276
ES_00017670	chr14	-	2687	14	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	265	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_13	47.4695791717765	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123192062	123156382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188002_123192042
ES_00017671	chr14	-	5407	17	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-2073	0	intron_retention	TRUE	canonical	3	7	junction_11	42.9445500034638	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123217779	123156382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182273_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485
ES_00017677	chr14	+	203	1	Intergenic	novelGene_1192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTTTATTAATATAGAAA	NA	False	NA	NA	False	NA	NA	NA	4286009	4286212	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_4286000_4286200
ES_00017678	chr14	+	250	1	Intergenic	novelGene_1195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCTGTAATAAGGACCGAT	NA	False	NA	NA	False	NA	NA	NA	4288210	4288460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_4288200_4288500
ES_00017680	chr14	+	548	1	Intergenic	novelGene_1197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGAATCCCCATCAAAAT	NA	False	NA	NA	False	NA	NA	NA	6519972	6520520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_6520000_6520500
ES_00017681	chr14	+	246	1	Intergenic	novelGene_1204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATCTTAGTATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12640799	12641045	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_12640800_12641000
ES_00017683	chr14	+	2967	1	Intergenic	novelGene_1205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGAGCGGCCTTCTCAGTC	NA	False	NA	NA	False	NA	NA	NA	13723445	13726412	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_13723400_13726400
ES_00017684	chr14	+	200	1	Intergenic	novelGene_1207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACTCATATTTGATATAT	NA	False	NA	NA	False	AAAAAG	-2	NA	14295697	14295897	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_14295700_14295900
ES_00017685	chr14	+	222	1	Intergenic	novelGene_1208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCCATTTTTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	14785240	14785462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_14785200_14785500
ES_00017686	chr14	+	217	1	Intergenic	novelGene_1215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTTGGCTCACTGTCTC	NA	False	NA	NA	False	NA	NA	NA	21693292	21693509	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_21693300_21693500
ES_00017687	chr14	+	224	1	Intergenic	novelGene_1216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	576	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAACAAAAAAAGAAGTG	558	False	NA	NA	False	NA	NA	NA	22185054	22185278	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_22185100_22185300
ES_00017688	chr14	+	214	1	Intergenic	novelGene_1217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24390101	24390315	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_24390100_24390300
ES_00017689	chr14	+	310	1	Intergenic	novelGene_1218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATAAATGTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	24458070	24458380	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_24458100_24458400
ES_00017690	chr14	+	313	1	Intergenic	novelGene_1220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	418	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACAAACATGGTGGCA	3417	False	NA	NA	False	NA	NA	NA	25591929	25592242	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_25591900_25592200
ES_00017691	chr14	+	404	1	Intergenic	novelGene_1231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGAAGTAGCTTCACGA	5349	False	NA	NA	False	NA	NA	NA	27408690	27409094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_27408700_27409100
ES_00017692	chr14	+	207	1	Intergenic	novelGene_1234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTGGTTTAAAACAGAACA	NA	False	NA	NA	False	NA	NA	NA	30259574	30259781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_30259600_30259800
ES_00017693	chr14	+	300	1	Intergenic	novelGene_1235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTGCTGGGATTAAA	NA	False	NA	NA	False	NA	NA	NA	30309918	30310218	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_30309900_30310200
ES_00017694	chr14	+	258	1	Intergenic	novelGene_1236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAAACCTTATTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	30349247	30349505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_30349200_30349500
ES_00017697	chr14	+	208	1	Intergenic	novelGene_1237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	34027339	34027547	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_34027300_34027500
ES_00017698	chr14	+	202	1	Intergenic	novelGene_1239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATCAATCAATCAATCTT	NA	False	NA	NA	False	NA	NA	NA	34194349	34194551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_34194300_34194600
ES_00017700	chr14	+	412	1	Intergenic	novelGene_1243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGATTCCTCATGCACAAA	NA	False	NA	NA	False	AATAAA	-19	NA	38102406	38102818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_38102400_38102800
ES_00017701	chr14	+	246	1	Intergenic	novelGene_1245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTCTTAAACTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	40851366	40851612	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_40851400_40851600
ES_00017702	chr14	+	230	1	Intergenic	novelGene_1250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCCAAACAGAAAACTTCAT	NA	False	NA	NA	False	NA	NA	NA	45606594	45606824	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_45606600_45606800
ES_00017703	chr14	+	254	1	Intergenic	novelGene_1252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	332	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCAGTTGTCATTCCGCA	NA	False	NA	NA	False	NA	NA	NA	45774627	45774881	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_45774600_45774900
ES_00017705	chr14	+	229	1	Intergenic	novelGene_1256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGTGGAATAAGAACTATC	4255	False	NA	NA	False	AAAAAG	-28	NA	47477758	47477987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_47477800_47478000
ES_00017706	chr14	+	222	1	Intergenic	novelGene_1258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGTTTTCTTAATGTCA	8237	False	NA	NA	False	NA	NA	NA	48141104	48141326	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_48141100_48141300
ES_00017707	chr14	+	233	1	Intergenic	novelGene_1260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGGCTGGAAGGATATG	NA	False	NA	NA	False	NA	NA	NA	49226722	49226955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_49226700_49227000
ES_00017709	chr14	+	213	1	Intergenic	novelGene_1263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTTCAAATAACTTTCA	NA	False	NA	NA	False	NA	NA	NA	50221864	50222077	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_50221900_50222100
ES_00017712	chr14	+	313	1	Intergenic	novelGene_1278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAATGGTCATTTGCT	6037	False	NA	NA	False	NA	NA	NA	55891149	55891462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_55891100_55891500
ES_00017715	chr14	+	241	1	Intergenic	novelGene_1280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACCTGCCTTCGTCTC	NA	False	NA	NA	False	NA	NA	NA	56221339	56221580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_56221300_56221600
ES_00017716	chr14	+	208	1	Intergenic	novelGene_1281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTTGTTCTGGTATTC	6836	False	NA	NA	False	NA	NA	NA	56371846	56372054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_56371800_56372100
ES_00017717	chr14	+	230	1	Intergenic	novelGene_1282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCTTTATTCTTAACTG	NA	False	NA	NA	False	NA	NA	NA	56638735	56638965	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_56638700_56639000
ES_00017718	chr14	+	238	1	Intergenic	novelGene_1283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTTTTCTAAGATAT	NA	False	NA	NA	False	NA	NA	NA	56826973	56827211	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_56827000_56827200
ES_00017724	chr14	+	545	1	Intergenic	novelGene_1295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCCTAGAGATAAGGATG	NA	False	NA	NA	False	NA	NA	NA	68354098	68354643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_68354100_68354600
ES_00017725	chr14	+	226	1	Intergenic	novelGene_1296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTCTGTCAGCTTGA	NA	False	NA	NA	False	NA	NA	NA	72764175	72764401	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_72764200_72764400
ES_00017726	chr14	+	268	1	Intergenic	novelGene_1297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAGAGGTAGACATTGAG	NA	False	NA	NA	False	NA	NA	NA	73215795	73216063	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_73215800_73216100
ES_00017729	chr14	+	318	1	Intergenic	novelGene_1300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTCAACTTCAGCCCCAA	NA	False	NA	NA	False	NA	NA	NA	80549917	80550235	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_80549900_80550200
ES_00017730	chr14	+	251	1	Intergenic	novelGene_1302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACCTATTTTACATTTT	NA	False	NA	NA	False	GATAAA	-18	NA	84993554	84993805	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_84993600_84993800
ES_00017732	chr14	+	2223	1	Intergenic	novelGene_1304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAACTTTGCAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	87624566	87626789	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_87624600_87626800
ES_00017733	chr14	+	705	1	Intergenic	novelGene_1305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCCTTCTCCCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	87628156	87628861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_87628200_87628900
ES_00017734	chr14	+	207	1	Intergenic	novelGene_1306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAATAACAAAGTTGGCA	NA	False	NA	NA	False	NA	NA	NA	87652435	87652642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_87652400_87652600
ES_00017735	chr14	+	5544	1	Intergenic	novelGene_1308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAAAATGTCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	90315934	90321478	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_90315900_90321500
ES_00017737	chr14	+	209	1	Intergenic	novelGene_1316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACACCTGCTTGTAACCC	NA	False	NA	NA	False	NA	NA	NA	99553460	99553669	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_99553500_99553700
ES_00017738	chr14	+	218	1	Intergenic	novelGene_1320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCGAGAACGCCAGCTATC	NA	False	NA	NA	False	NA	NA	NA	104953208	104953426	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_104953200_104953400
ES_00017739	chr14	+	262	1	Intergenic	novelGene_1321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGTTCAATATATGACAA	NA	False	NA	NA	False	AATAAA	-37	NA	109007505	109007767	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_109007500_109007800
ES_00017744	chr14	+	271	1	Intergenic	novelGene_1322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGCAAGCTTAAGTGAG	NA	False	NA	NA	False	NA	NA	NA	121010306	121010577	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_121010300_121010600
ES_00017745	chr14	+	318	1	Intergenic	novelGene_1323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAAAATTTAAGATTTC	NA	False	NA	NA	False	NA	NA	NA	121740705	121741023	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_121740700_121741000
ES_00017748	chr14	+	492	3	FSM	ENSMUSG00000021774.14	ENSMUST00000160266.8	492	3	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	13.5	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGGTTGGCTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	4138661	4184783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4138747_4143265_4143317_4184427
ES_00017749	chr14	+	802	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTAAAATTCATATCCAA	NA	False	NA	-38	True	AATACA	-8	NA	4199069	4200696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4199418_4199652_4199790_4200379
ES_00017750	chr14	+	3466	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112624.3	1586	3	14	-1894	14	0	multi-exon	FALSE	canonical	1	1	junction_1	10	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATCAGCTGATTCTG	NA	False	NA	NA	False	AATAAA	-28	NA	6220602	6231111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_6220642_6226964_6227973_6228692
ES_00017751	chr14	+	1935	7	FSM	ENSMUSG00000053453.10	ENSMUST00000223832.2	1918	7	-17	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	120.431169830184	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508485	8520749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8508579_8515106_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00017752	chr14	+	707	6	FSM	ENSMUSG00000053453.10	ENSMUST00000225590.2	707	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	264.30966686824	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGAGCATCTCTCACAT	NA	False	NA	NA	False	NA	NA	NA	8508602	8519420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397
ES_00017753	chr14	+	1575	5	FSM	ENSMUSG00000021743.7	ENSMUST00000022262.6	2188	5	318	295	203	-295	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGCTAAAATCTATTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	10124121	10127366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_10124177_10124524_10125415_10125710_10125846_10125991_10126125_10127004
ES_00017756	chr14	+	1745	5	FSM	ENSMUSG00000096904.8	ENSMUST00000164408.8	1745	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.4318633651737	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16057290	16063946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_16057426_16058159_16058323_16059272_16059405_16060080_16060263_16062813
ES_00017757	chr14	+	1828	5	ISM	ENSMUSG00000096629.8	ENSMUST00000112758.10	1813	6	9725	-4	9725	4	3prime_fragment	FALSE	canonical	0	0	junction_1	10.2225241501304	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTATGCTTCTGCGTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	16671539	16679221	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_16671743_16672474_16672638_16673586_16673719_16674393_16674577_16678074
ES_00017758	chr14	+	1755	5	ISM	ENSMUSG00000094370.8	ENSMUST00000177556.8	1955	7	15630	0	15630	0	3prime_fragment	FALSE	canonical	0	0	junction_1	7.79422863405995	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	16743825	16751437	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_16743960_16744691_16744855_16745804_16745937_16746611_16746795_16750294
ES_00017760	chr14	+	447	2	FSM	ENSMUSG00000021809.11	ENSMUST00000225728.2	375	2	-52	-20	-52	0	multi-exon	FALSE	canonical	3	17	junction_1	0	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTCAAATGGAGCCGTCT	NA	False	NA	NA	False	NA	NA	NA	20361444	20366289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20361694_20366091
ES_00017761	chr14	+	2197	9	ISM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	-21	6740	11	249	5prime_fragment	FALSE	canonical	3	87	junction_7	68.9373583407429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGACATATAGTCATATT	NA	False	NA	NA	False	NA	NA	NA	20398268	20426604	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577
ES_00017762	chr14	+	2141	13	NIC	ENSMUSG00000039599.17	novel	2370	14	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	86.6052667118012	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTTATTACATTTTAGA	NA	False	NA	11	True	AATAAA	-20	NA	20398293	20433559	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20428467_20428592_20428831_20428952_20431816_20431890_20432984
ES_00017764	chr14	+	1703	8	NNC	ENSMUSG00000039599.17	novel	4483	8	NA	NA	0	500	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	86.4754300365138	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATATGTTCTTTAATATT	NA	False	NA	17	True	NA	NA	NA	20398327	20418635	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417918
ES_00017765	chr14	+	2147	13	NIC	ENSMUSG00000039599.17	novel	2370	14	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_8	86.9643924578074	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCTTTATTACATTTTA	NA	False	NA	9	True	AATAAA	-18	NA	20398348	20433557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
ES_00017767	chr14	+	733	1	FSM	ENSMUSG00000099966.2	ENSMUST00000190699.2	3040	1	109	2198	109	-2198	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTACAGTGTACAACTTA	2700	False	NA	NA	False	AGTAAA	-13	NA	20691185	20691918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20691200_20691900
ES_00017768	chr14	+	763	5	FSM	ENSMUSG00000039367.12	ENSMUST00000224793.2	763	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	17.0642169465815	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTCGGCTCCGCATCCACA	NA	False	NA	NA	False	NA	NA	NA	20739712	20741800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505
ES_00017770	chr14	+	4415	2	FSM	ENSMUSG00000039357.3	ENSMUST00000225804.2	3422	2	-2	-991	-2	170	multi-exon	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGTATTTGCTTATTTT	NA	False	NA	NA	False	NA	NA	NA	20745042	20751254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20746482_20748278
ES_00017772	chr14	+	371	2	FSM	ENSMUSG00000021819.12	ENSMUST00000225715.2	598	2	0	227	0	-227	multi-exon	FALSE	canonical	3	32	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGTGATGGGCACGGTA	NA	False	NA	NA	False	NA	NA	NA	20762166	20762660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20762187_20762309
ES_00017773	chr14	+	1098	6	FSM	ENSMUSG00000021819.12	ENSMUST00000225911.2	1098	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	22.2081066279861	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGGGTCTTTGCCTTC	NA	False	NA	17	True	TATAAA	-25	NA	20771678	20773687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772963_20773075_20773206
ES_00017775	chr14	+	7783	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_7	47.4657771452233	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	NA	False	NA	10	True	AATAAA	-20	NA	21531512	21722201	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675830_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ES_00017776	chr14	+	7402	16	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_15	57.2368956375363	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	6005	False	NA	10	True	AATAAA	-20	NA	21566962	21722201	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675830_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718401
ES_00017777	chr14	+	8106	11	ISM	ENSMUSG00000021767.20	ENSMUST00000182964.3	7699	17	121689	345	0	0	3prime_fragment	FALSE	canonical	3	25	junction_1	50.0443803038863	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	NA	False	NA	10	True	AATAAA	-20	NA	21672609	21722201	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_21675284_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ES_00017779	chr14	+	2039	2	FSM	ENSMUSG00000021771.15	ENSMUST00000142084.3	2039	2	0	0	0	0	multi-exon	FALSE	canonical	3	2427	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTGCATGTTTGTT	NA	False	NA	22	True	AATAGA	-18	NA	21892342	21895587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21894008_21895213
ES_00017781	chr14	+	2733	14	FSM	ENSMUSG00000021866.16	ENSMUST00000133547.2	2733	14	0	0	0	0	multi-exon	TRUE	canonical	3	393	junction_4	23.1322413898	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	2	True	NA	26	True	AATAAA	-34	NA	25842606	25887228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
ES_00017782	chr14	+	1600	3	FSM	ENSMUSG00000095975.4	ENSMUST00000061593.7	570	3	108	-1138	108	13	multi-exon	FALSE	canonical	2	4	junction_1	2.5	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATACCTGTATGTAGAC	NA	False	NA	NA	False	AATAAA	-19	NA	25952339	25956793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_25952543_25955303_25955421_25955513
ES_00017783	chr14	+	7970	12	ISM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	37433	-2	8977	2	3prime_fragment	FALSE	canonical	3	13	junction_2	3.7482778414706	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGGCTCCTTATTTC	NA	False	NA	7	True	AATAAA	-17	NA	26798330	26829245	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_26798366_26804611_26804738_26809355_26809475_26809962_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817859_26818045_26821439_26822383_26823233
ES_00017784	chr14	+	1893	9	FSM	ENSMUSG00000040717.7	ENSMUST00000225829.2	2134	9	241	0	241	0	multi-exon	FALSE	canonical	3	13	junction_3	3.11999599358717	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATATCTGGAATGAAATTC	NA	False	NA	NA	False	NA	NA	NA	26809962	26823448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817859_26818045_26821439_26822383_26823233
ES_00017785	chr14	+	3710	13	NIC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-47	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	15.3622914957372	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	26836808	27125868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_26836881_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ES_00017787	chr14	+	2626	4	NIC	ENSMUSG00000040640.12	novel	3339	8	NA	NA	-73	1405	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	17.7451088722749	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTGTTTGTTTGTTTG	2253	False	NA	NA	False	AATAAA	-24	NA	27344311	27377164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_27344572_27345639_27345707_27374643_27375441_27375662
ES_00017788	chr14	+	1135	4	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	19.3448241713959	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTATTGTCTGTTTA	2326	False	NA	15	True	ATTAAA	-12	NA	27344384	27375759	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_27344572_27350368_27350423_27374643_27375441_27375662
ES_00017789	chr14	+	734	6	FSM	ENSMUSG00000015971.6	ENSMUST00000225161.2	874	6	0	140	0	-140	multi-exon	FALSE	canonical	3	289	junction_1	20.6164982477626	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGTGAAACAAGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	29707952	29711053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909
ES_00017792	chr14	+	2254	12	FSM	ENSMUSG00000052395.18	ENSMUST00000226817.2	2234	12	-20	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	15.4181389364755	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTCTTTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376343	30413274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398858_30399643_30399775_30401187_30401333_30411661_30411912_30412398
ES_00017794	chr14	+	2132	13	FSM	ENSMUSG00000021918.11	ENSMUST00000226146.2	2132	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	15.7239643714795	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATATCTTTGTTACTGT	1596	False	NA	NA	False	AAGAAA	-37	NA	30678871	30709401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30696264_30696316_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
ES_00017797	chr14	+	7823	31	NIC	ENSMUSG00000042323.18	novel	7907	31	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	53.2292734832588	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8263	False	NA	14	True	AATAAA	-21	NA	30741142	30843549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30745023_30745128_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ES_00017800	chr14	+	3855	16	FSM	ENSMUSG00000021901.11	ENSMUST00000190788.7	3855	16	0	0	0	0	multi-exon	TRUE	canonical	3	339	junction_7	25.7505986985416	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGGTTGCTATCTCGA	NA	False	NA	11	True	AATAAA	-18	NA	30973494	30981887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
ES_00017802	chr14	+	1144	3	FSM	ENSMUSG00000021890.7	ENSMUST00000228952.2	627	3	-37	-480	-37	480	multi-exon	FALSE	canonical	3	261	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCACGTGGTAGAAGACCT	6362	False	NA	NA	False	AATAAA	-44	NA	31217115	31222912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_31217329_31219665_31219761_31222076
ES_00017811	chr14	+	3729	25	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	114.261570955515	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043946	32070108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462_32069787_32069809
ES_00017812	chr14	+	8035	21	NNC	ENSMUSG00000054051.8	novel	8423	21	NA	NA	0	-383	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	29.9439476355406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTCTGAAAACCCACGTG	NA	False	NA	NA	False	AGTAAA	-5	NA	32235486	32302564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_32235557_32238899_32239336_32240899_32241021_32242904_32243017_32248105_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ES_00017815	chr14	+	206	1	Intergenic	novelGene_1240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAACCAGGAGCTTGTGTG	4591	False	NA	NA	False	NA	NA	NA	34263391	34263597	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_34263400_34263600
ES_00017816	chr14	+	329	1	FSM	ENSMUSG00000074553.5	ENSMUST00000086606.7	330	1	126	-125	126	125	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTAACTTGAACTAGT	NA	False	NA	NA	False	TTTAAA	-37	NA	39728302	39728631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_39728300_39728600
ES_00017817	chr14	+	2029	5	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14083	30	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_3	4.54835134966506	186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGTATGCTTCTGCTTT	NA	False	NA	NA	False	AATAAA	-41	NA	40986678	41010802	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_40986778_40986925_40987404_41001646_41001810_41002809_41002942_41009645
ES_00017819	chr14	+	411	2	Antisense	novelGene_ENSMUSG00000095551.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACCAGCTTTACTCAG	NA	False	NA	NA	False	AAAAAG	-33	NA	41709052	41724592	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_41709388_41724516
ES_00017820	chr14	+	1632	5	FSM	ENSMUSG00000079271.5	ENSMUST00000095985.5	1761	5	46	83	46	-83	multi-exon	TRUE	canonical	1	1	junction_1	8.31790237980706	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGACAGTGTTGAACAA	NA	False	NA	NA	False	NA	NA	NA	41746951	41754915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_41747062_41747789_41747953_41748897_41749030_41749709_41749892_41753870
ES_00017821	chr14	+	1565	5	NNC	ENSMUSG00000094157.8	novel	1239	4	NA	NA	-69369	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	25.7293606605372	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAACTCTTCACTCTTAA	NA	False	NA	NA	False	AATAAA	-9	NA	42062797	42147347	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_42063128_42132167_42132331_42133285_42133418_42134097_42134279_42146588
ES_00017822	chr14	+	377	1	FSM	ENSMUSG00000114402.2	ENSMUST00000224985.2	178	1	-220	21	-220	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGCGACTCTCCACCAC	NA	False	NA	NA	False	NA	NA	NA	42274641	42275018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_42274600_42275000
ES_00017824	chr14	+	1239	4	FSM	ENSMUSG00000093948.8	ENSMUST00000166527.2	1239	4	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	22.1710521977545	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	42477895	42485562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_42478059_42479014_42479147_42479826_42480008_42484799
ES_00017825	chr14	+	920	2	Fusion	ENSMUSG00000090396.2_ENSMUSG00000096446.2	novel	615	4	NA	NA	2852	-332	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTCTTAAGAAACTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	42903278	42972315	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_+_42903403_42971519
ES_00017826	chr14	+	655	3	NNC	ENSMUSG00000114317.2	novel	390	3	NA	NA	-31645	866	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGATGATGTGTATCAGA	NA	False	NA	NA	False	NA	NA	NA	42915256	42967540	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_42915598_42966542_42966675_42967358
ES_00017827	chr14	+	1211	4	Fusion	ENSMUSG00000114619.2_ENSMUSG00000094151.2	novel	1241	3	NA	NA	-2551	-310	multi-exon	FALSE	canonical	1	4	junction_1	8.28653526310404	88	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCTGTGGTATCACCCT	NA	False	NA	NA	False	AATAAA	-41	NA	43034772	43045135	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_+_43034871_43038207_43038371_43039360_43039493_43044317
ES_00017828	chr14	+	1718	5	FSM	ENSMUSG00000090634.2	ENSMUST00000169587.2	1764	5	46	0	46	0	multi-exon	FALSE	canonical	2	10	junction_4	21.6376408140999	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAATATAAAAGCTGGT	NA	False	NA	NA	False	AATAAA	-11	NA	43116151	43124256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_43116262_43116990_43117154_43118142_43118275_43118957_43119140_43123125
ES_00017829	chr14	+	2008	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3313	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	21.2779228309532	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATTTAAAAGCTCTAG	NA	False	NA	NA	False	AATAAA	-12	NA	43129179	43163462	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_43129304_43132375_43132821_43157302_43157435_43158114_43158297_43162337
ES_00017832	chr14	+	841	2	Antisense	novelGene_ENSMUSG00000114986.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGCACTGGCTATGGGG	NA	False	NA	NA	False	NA	NA	NA	43735064	43770410	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_43735407_43769911
ES_00017833	chr14	+	1585	7	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-2497	0	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_1	9.58586922969894	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTGTGGTATCACCCTA	NA	False	NA	NA	False	AATAAA	-42	NA	43778535	43788670	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_43778627_43779598_43779685_43781120_43781231_43781959_43782123_43783111_43783244_43783926_43784109_43787849
ES_00017836	chr14	+	1730	12	FSM	ENSMUSG00000053205.10	ENSMUST00000226303.2	1730	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	88.5079255917908	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAGGATAGTGTTA	NA	False	NA	NA	False	ATTAAA	-35	NA	45588678	45611758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45595673_45595765_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
ES_00017837	chr14	+	328	1	Intergenic	novelGene_1251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACGCCCGGCCAACAGCC	NA	False	NA	NA	False	NA	NA	NA	45653282	45653610	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_45653300_45653600
ES_00017838	chr14	+	743	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-10	-12	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGAAGGTGGACTCCAG	NA	False	NA	NA	False	NA	NA	NA	46321474	46322445	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_46321859_46322086
ES_00017839	chr14	+	702	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-44	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAGCATAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	46321483	46322413	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_46321631_46321858
ES_00017840	chr14	+	6848	3	NNC	ENSMUSG00000048379.10	novel	6877	2	NA	NA	5	0	intron_retention	FALSE	non_canonical	1	6	junction_2	14.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCGTTTTTAAAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	47514392	47533559	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47514679_47526973_47529935_47529958
ES_00017843	chr14	+	4436	41	FSM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_40	180.470106596633	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886767	47974014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
ES_00017844	chr14	+	5292	42	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	9	770	combination_of_known_junctions	FALSE	canonical	3	70	junction_41	183.663945762989	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGAGGCAAGAGGAC	NA	False	NA	NA	False	NA	NA	NA	47886781	47974791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971728_47973556
ES_00017845	chr14	+	5176	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	9	770	combination_of_known_junctions	FALSE	canonical	3	329	junction_36	142.740216389776	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGAGGCAAGAGGAC	NA	False	NA	NA	False	NA	NA	NA	47886781	47974791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00017846	chr14	+	4250	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	24	-1	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	167.513152162066	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTCACTCTGATTGTCG	NA	False	NA	20	True	AATAAA	-20	NA	47886796	47974017	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00017847	chr14	+	5151	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	31	770	combination_of_known_junctions	FALSE	canonical	3	70	junction_40	208.818222384925	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGAGGCAAGAGGAC	NA	False	NA	NA	False	NA	NA	NA	47886803	47974791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971728_47973556
ES_00017848	chr14	+	4271	40	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	107	junction_3	177.302124613624	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886834	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907587_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00017850	chr14	+	3846	38	FSM	ENSMUSG00000021843.18	ENSMUST00000185343.7	3846	38	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_22	143.931000634869	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTTTAGTTTTATAATA	2384	False	NA	108	True	AAAAAG	-20	NA	47901243	47973748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00017852	chr14	+	4568	38	NIC	ENSMUSG00000021843.18	novel	3902	39	NA	NA	303	770	combination_of_known_junctions	FALSE	canonical	3	354	junction_30	132.284832253785	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGAGGCAAGAGGAC	2687	False	NA	NA	False	NA	NA	NA	47901546	47974791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00017853	chr14	+	4728	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	314	770	combination_of_known_junctions	FALSE	canonical	3	145	junction_36	172.394887888682	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGAGGCAAGAGGAC	2698	False	NA	NA	False	NA	NA	NA	47901557	47974791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
ES_00017854	chr14	+	1006	1	FSM	ENSMUSG00000063885.6	ENSMUST00000181413.3	1006	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	474	False	NA	NA	False	NA	NA	NA	48464657	48465663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_48464700_48465700
ES_00017858	chr14	+	1868	5	FSM	ENSMUSG00000036291.7	ENSMUST00000227431.2	3757	5	0	1889	0	-138	multi-exon	TRUE	canonical	3	109	junction_2	16.0682139642214	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTATGGTTTTGTTTAT	NA	False	NA	NA	False	AAAAAG	-21	NA	49303553	49318378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292
ES_00017859	chr14	+	2373	8	FSM	ENSMUSG00000036291.7	ENSMUST00000227608.2	2362	8	-11	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	43.4276315687774	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGTCCCTGTCGTTTT	NA	False	NA	NA	False	AATATA	-18	NA	49303987	49324876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_49304322_49311005_49311200_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ES_00017860	chr14	+	2856	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	-1	659	0	-659	multi-exon	FALSE	canonical	3	152	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCATCCTGTATTTGT	NA	False	NA	NA	False	CATAAA	-17	NA	49303951	49313491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_49304322_49311005
ES_00017864	chr14	+	218	1	FSM	ENSMUSG00000078125.3	ENSMUST00000080330.6	483	1	-13	278	-13	-278	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGCTGTGGGCATCATT	NA	False	NA	NA	False	NA	NA	NA	51006691	51006909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51006700_51006900
ES_00017866	chr14	+	1244	2	FSM	ENSMUSG00000021876.16	ENSMUST00000169895.3	1460	2	0	216	0	-212	multi-exon	FALSE	canonical	1	1	junction_1	0	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGACAGATCACCAATGCA	NA	False	NA	NA	False	NA	NA	NA	51333815	51343392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51333931_51342263
ES_00017872	chr14	+	1130	3	NIC	ENSMUSG00000072572.10	novel	2334	4	NA	NA	211	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	6	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACCTCATTGCAATTCT	NA	False	NA	11	True	AATAAA	-22	NA	52131277	52133260	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_52131372_52131545_52131677_52132355
ES_00017873	chr14	+	859	1	FSM	ENSMUSG00000115141.2	ENSMUST00000227187.2	825	1	63	-97	63	97	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTTCAGATCCCTTGGA	NA	False	NA	NA	False	NA	NA	NA	52260803	52261662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52260800_52261700
ES_00017875	chr14	+	204	2	Intergenic	novelGene_1270	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	20	junction_1	0	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAAAGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	52372515	52376722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_52372591_52376593
ES_00017879	chr14	+	5399	10	FSM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	3	-52	3	52	multi-exon	FALSE	canonical	3	15	junction_1	167.945390889383	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGACTGACAGGAGTATT	NA	False	NA	73	True	NA	NA	NA	52516605	52533910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ES_00017880	chr14	+	1262	1	FSM	ENSMUSG00000105666.2	ENSMUST00000199341.2	750	1	3	-515	3	515	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTCAAAATTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	53703538	53704800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_53703500_53704800
ES_00017881	chr14	+	557	5	FSM	ENSMUSG00000040997.15	ENSMUST00000196699.3	551	5	-6	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	153.789629039152	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGAGTCACCTCCCGAT	NA	False	NA	NA	False	NA	NA	NA	54496729	54500777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54496777_54499082_54499172_54500107_54500215_54500318_54500481_54500625
ES_00017882	chr14	+	672	4	FSM	ENSMUSG00000040997.15	ENSMUST00000197605.3	737	4	65	0	65	0	multi-exon	FALSE	canonical	1	3	junction_1	175.98169096686	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTCACCTCCCGATGAA	NA	False	NA	NA	False	NA	NA	NA	54496828	54500780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54496884_54499082_54499172_54500107_54500481_54500625
ES_00017885	chr14	+	243	2	Intergenic	novelGene_1273	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	99	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTAACTCCAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	54658063	54658512	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_54658119_54658324
ES_00017890	chr14	+	202	2	Antisense	novelGene_ENSMUSG00000086420.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTACTTGGTGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	54837528	55069258	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_54837580_55069107
ES_00017891	chr14	+	211	1	Genic_Genomic	ENSMUSG00000040840.8	novel	NA	NA	NA	NA	-143	-4029	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACAACTCTTCTTGGGG	4242	False	NA	NA	False	NA	NA	NA	54887824	54888035	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_+_54887800_54888000
ES_00017893	chr14	+	1184	12	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	44	23602	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	444.465729976977	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACCTCACCAACCCC	NA	False	NA	NA	False	NA	NA	NA	55252954	55285196	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445_55261589_55285162
ES_00017898	chr14	+	3605	14	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	-6	0	intron_retention	FALSE	canonical	3	32	junction_1	30.9676295967295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797456	55807518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00017902	chr14	+	2858	1	FSM	ENSMUSG00000115222.2	ENSMUST00000228007.2	2749	1	-134	25	-134	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAATAAACTATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	55880926	55883784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55880900_55883800
ES_00017905	chr14	+	3409	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	3	14	junction_10	112.817699556999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTCTATTGGTTTC	NA	False	NA	1	True	ATTAAA	-9	NA	56640153	56726885	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ES_00017907	chr14	+	927	4	FSM	ENSMUSG00000079184.11	ENSMUST00000138174.8	950	4	23	0	23	0	multi-exon	FALSE	canonical	3	883	junction_2	25.381533094402	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTCTACTAGTCGTTG	1452	False	NA	29	True	ATTAAA	-15	NA	56930617	56934884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_56931036_56933077_56933206_56934115_56934200_56934587
ES_00017908	chr14	+	718	1	FSM	ENSMUSG00000100017.3	ENSMUST00000186474.3	1911	1	30	1163	30	-1163	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGCAGTGACCCTCTAA	NA	False	NA	NA	False	NA	NA	NA	57049475	57050193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_57049500_57050200
ES_00017910	chr14	+	6934	24	FSM	ENSMUSG00000021945.10	ENSMUST00000022511.10	6974	24	0	40	0	-40	multi-exon	FALSE	canonical	2	100	junction_11	25.3409267961625	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATGTCTTAAATATCCT	NA	False	NA	NA	False	NA	NA	NA	57125275	57200118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
ES_00017911	chr14	+	297	1	FSM	ENSMUSG00000092358.2	ENSMUST00000172474.2	207	1	0	-90	0	90	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTAGTATTTCAGTAGTT	NA	False	NA	NA	False	AAAAAG	-33	NA	57935469	57935766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_57935500_57935800
ES_00017912	chr14	+	517	2	NNC	ENSMUSG00000021967.5	novel	2877	2	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	155	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGTTGTCTCATACGGA	NA	False	NA	24	True	ATTAAA	-16	NA	58063692	58064404	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_58063771_58063965
ES_00017913	chr14	+	2112	13	NIC	ENSMUSG00000035469.18	novel	2163	13	NA	NA	-90	-255	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	112.641762533559	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGACGGCTGCGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	59438567	59472719	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_59439034_59443073_59443172_59447376_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ES_00017914	chr14	+	1617	12	NIC	ENSMUSG00000035469.18	novel	3903	12	NA	NA	-3	-255	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	90.3297906251319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGACGGCTGCGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	59438687	59472719	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_59438754_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ES_00017915	chr14	+	3957	13	FSM	ENSMUSG00000035469.18	ENSMUST00000022551.14	3957	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	116.922338897806	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438690	59474714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_59439034_59447191_59447260_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ES_00017916	chr14	+	623	6	FSM	ENSMUSG00000021981.11	ENSMUST00000223678.2	623	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	157.34497132098	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACACTCATAGCTGACCT	NA	False	NA	NA	False	NA	NA	NA	59696586	59737118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_59696691_59699083_59699152_59715480_59715523_59716492_59716634_59734251_59734394_59736992
ES_00017917	chr14	+	7512	13	FSM	ENSMUSG00000021990.17	ENSMUST00000022566.14	7517	13	0	5	0	2	multi-exon	FALSE	canonical	2	7	junction_3	4.19242040936842	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTCTAGTGATGCATC	NA	False	NA	6	True	ATTAAA	-14	NA	60872177	61002000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_60872314_60928302_60929998_60944162_60944529_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ES_00017918	chr14	+	429	3	FSM	ENSMUSG00000021990.17	ENSMUST00000159135.2	429	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAAGCCAGGCTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	60872203	60928342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_60872314_60873816_60874096_60928302
ES_00017919	chr14	+	1225	7	FSM	ENSMUSG00000021990.17	ENSMUST00000162131.9	1208	7	-17	0	-17	0	multi-exon	FALSE	canonical	3	10	junction_1	3.77123616632825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTATTTTTGGAAACAT	NA	False	NA	NA	False	NA	NA	NA	60940384	60987465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_60940572_60944162_60944499_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411
ES_00017920	chr14	+	10045	1	Genic_Genomic	ENSMUSG00000048279.20	novel	NA	NA	NA	NA	11982	2	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGACTGGTTATTTTTA	NA	False	NA	17	True	AATAAA	-20	NA	61442903	61452948	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_+_61442900_61452900
ES_00017921	chr14	+	362	5	FSM	ENSMUSG00000021932.14	ENSMUST00000166879.8	362	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	299.297824081633	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGTTTCCAGATTGCAC	NA	False	NA	NA	False	NA	NA	NA	62530037	62591007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_62530104_62584016_62584092_62585969_62586078_62587848_62587926_62590971
ES_00017923	chr14	+	556	1	FSM	ENSMUSG00000021939.9	ENSMUST00000225639.2	1269	1	725	-12	725	12	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTCATGCTTAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	63360687	63361243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_63360700_63361200
ES_00017924	chr14	+	4466	3	FSM	ENSMUSG00000035067.10	ENSMUST00000176510.2	4315	3	-158	7	14	-7	multi-exon	FALSE	canonical	2	12	junction_1	1.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCAACACTTGAAATTTT	8868	False	NA	11	True	AATAAA	-24	NA	63843965	63903624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_63844734_63898268_63898376_63900033
ES_00017925	chr14	+	811	2	NNC	ENSMUSG00000021958.6	novel	1295	7	NA	NA	-6989	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTGAGCCTTTCACAT	NA	False	NA	NA	False	AATAAA	-37	NA	64130228	64157302	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_64130283_64156545
ES_00017928	chr14	+	1143	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	25595	18	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	15.5904209208666	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTGGTATCATTTTCT	NA	False	NA	NA	False	TATAAA	-19	NA	65868310	65885911	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_65868363_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
ES_00017929	chr14	+	1490	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043683	66055271	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ES_00017930	chr14	+	1969	5	FSM	ENSMUSG00000003469.10	ENSMUST00000003561.10	2838	5	260	609	260	-609	multi-exon	FALSE	canonical	1	1	junction_1	2.17944947177034	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGCTCTGCCTGAGAGTC	NA	False	NA	NA	False	NA	NA	NA	70695175	70705663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_70695244_70699178_70699364_70700679_70700855_70702889_70703008_70704240
ES_00017932	chr14	+	319	2	FSM	ENSMUSG00000022102.14	ENSMUST00000164691.2	425	2	106	0	106	0	multi-exon	FALSE	canonical	2	6	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCATCCCTGCCAGCCA	NA	False	NA	NA	False	NA	NA	NA	71014255	71015035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_71014438_71014898
ES_00017933	chr14	+	3444	16	FSM	ENSMUSG00000022106.15	ENSMUST00000169513.8	3622	16	0	178	0	-7	multi-exon	FALSE	canonical	1	2	junction_5	12.7774106227444	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTGATAGAACAAACTGCC	NA	False	NA	NA	False	AATAAA	-3	NA	73380538	73421480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73395827_73395886_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ES_00017934	chr14	+	1841	1	FSM	ENSMUSG00000033446.8	ENSMUST00000044405.8	5400	1	102	3457	102	-3457	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACTCCATAAAGTTA	NA	False	NA	NA	False	ATTAAA	-3	NA	73475436	73477277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_73475400_73477300
ES_00017937	chr14	+	3573	17	NIC	ENSMUSG00000021998.17	novel	692	3	NA	NA	440	2	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	6.34921254960015	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTCCCCCAATTCTG	NA	False	NA	NA	False	AATAAA	-25	NA	75414087	75468258	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_75414155_75414254_75414374_75435516_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
ES_00017939	chr14	+	1104	5	FSM	ENSMUSG00000060126.15	ENSMUST00000142061.3	996	5	-318	210	-109	18	multi-exon	FALSE	canonical	1	33	junction_1	2393.82772719759	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTGTGCTGACCCTGTA	729	False	NA	22	True	AATAAA	-33	NA	76082423	76085755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76082897_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ES_00017941	chr14	+	3983	3	FSM	ENSMUSG00000022010.20	ENSMUST00000175811.8	650	3	-2095	-1238	-2095	-8	multi-exon	FALSE	canonical	3	17	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACTGATAAATGGCTTAT	1448	False	NA	NA	False	AATAAA	-25	NA	76673110	76679060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76675256_76676375_76676549_76677395
ES_00017943	chr14	+	1737	2	FSM	ENSMUSG00000101009.7	ENSMUST00000191384.2	210	2	-1254	-273	-1254	-9	multi-exon	FALSE	canonical	3	17	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATCAAAGAAACCTGGAG	NA	False	NA	NA	False	NA	NA	NA	76917939	76924600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76919350_76924273
ES_00017944	chr14	+	3903	9	FSM	ENSMUSG00000036461.17	ENSMUST00000110835.3	3888	9	-15	0	-15	0	multi-exon	FALSE	canonical	3	8	junction_1	8.6854763830201	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTGTTTGTAATTCT	NA	False	NA	NA	False	ATTAAA	-39	NA	79753098	79819934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_79753211_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
ES_00017947	chr14	+	369	1	Intergenic	novelGene_1312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATGTCAGAAAGTC	NA	False	NA	NA	False	NA	NA	NA	94554504	94554873	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_94554500_94554900
ES_00017950	chr14	+	3450	9	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	9426	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	141.047864216372	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99293341	99311976	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_99293561_99293665_99294257_99297675_99297818_99297865_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ES_00017951	chr14	+	398	1	Intergenic	novelGene_1315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTCTCTTTGTAGATTT	NA	False	NA	NA	False	NA	NA	NA	99486946	99487344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_99486900_99487300
ES_00017954	chr14	+	421	2	Genic_Genomic	ENSMUSG00000060143.8	novel	384	1	NA	NA	-4	32957	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTGAGAGAACCTAGAT	NA	False	NA	NA	False	NA	NA	NA	105919257	105952602	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_+_105919651_105952574
ES_00017956	chr14	+	3494	2	NNC	ENSMUSG00000089726.3	novel	3536	2	NA	NA	-145	1	intron_retention	FALSE	canonical	3	22	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTGTATCTTGTTTTTT	NA	False	NA	8	True	AATAAA	-20	NA	115280165	115284160	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_115283043_115283543
ES_00017965	chr14	-	503	1	FSM	ENSMUSG00000035129.7	ENSMUST00000038304.7	1242	1	1120	-381	1120	381	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCCAGAGCTCCTTCAGA	NA	False	NA	NA	False	AATAGA	-37	NA	3937213	3936710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_3936700_3937200
ES_00017966	chr14	-	832	1	FSM	ENSMUSG00000114894.2	ENSMUST00000224608.2	832	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTTTACCTGCAGAGTG	NA	False	NA	NA	False	NA	NA	NA	4227274	4226442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_4226400_4227300
ES_00017967	chr14	-	587	1	FSM	ENSMUSG00000114202.3	ENSMUST00000224816.3	592	1	133	-128	133	128	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTTTCAAATGCCCACAA	NA	False	NA	NA	False	NA	NA	NA	5516086	5515499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_5515500_5516100
ES_00017968	chr14	-	5674	37	NNC	ENSMUSG00000017485.12	novel	10335	36	NA	NA	0	57777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	47.5583705682933	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGGAGAGTGAATTGAG	3843	False	NA	NA	False	TATAAA	-14	NA	6104584	5976523	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_5976538_6038975_6039465_6040330_6040426_6041163_6041290_6044297_6044409_6045984_6046065_6046939_6047142_6048898_6049061_6049277_6049423_6051231_6051427_6052727_6052812_6053050_6053207_6055769_6055862_6056006_6056203_6056643_6056845_6057572_6057708_6059737_6059970_6060445_6060595_6060814_6060937_6062357_6062473_6062558_6062652_6062923_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
ES_00017969	chr14	-	5685	37	NNC	ENSMUSG00000017485.12	novel	10335	36	NA	NA	0	31275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.5583705682933	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTTCTATTGTGGGTT	3843	False	NA	NA	False	NA	NA	NA	6104584	6003025	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_6003053_6038977_6039465_6040330_6040426_6041163_6041290_6044297_6044409_6045984_6046065_6046939_6047142_6048898_6049061_6049277_6049423_6051231_6051427_6052727_6052812_6053050_6053207_6055769_6055862_6056006_6056203_6056643_6056845_6057572_6057708_6059737_6059970_6060445_6060595_6060814_6060937_6062357_6062473_6062558_6062652_6062923_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
ES_00017971	chr14	-	2435	4	ISM	ENSMUSG00000021785.9	ENSMUST00000153109.2	3296	5	-47	10960	0	1354	5prime_fragment	FALSE	canonical	3	70	junction_2	8.52447456836295	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTAATTGATTTTTATC	NA	False	NA	NA	False	NA	NA	NA	6220483	6197423	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_6199289_6208962_6209200_6215006_6215122_6220265
ES_00017972	chr14	-	3244	1	FSM	ENSMUSG00000021733.12	ENSMUST00000224750.2	3401	1	-25	182	-25	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGCTTCTATTTCATC	NA	False	NA	NA	False	NA	NA	NA	7706021	7702777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_7702800_7706000
ES_00017973	chr14	-	485	3	FSM	ENSMUSG00000021733.12	ENSMUST00000225508.2	761	3	0	276	0	252	multi-exon	FALSE	canonical	3	91	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTAACCTGTCCCCAAG	NA	False	NA	NA	False	NA	NA	NA	7712429	7707135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_7707416_7709421_7709529_7712331
ES_00017974	chr14	-	1492	12	FSM	ENSMUSG00000068758.9	ENSMUST00000090591.4	1614	12	122	0	-21	0	multi-exon	FALSE	canonical	2	4	junction_11	9.46153587727832	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8123366	8114272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574_8122754_8123250
ES_00017975	chr14	-	2473	6	FSM	ENSMUSG00000033111.17	ENSMUST00000112669.10	2477	6	4	0	4	0	multi-exon	FALSE	canonical	3	8	junction_2	65.4785461048121	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185550	10166531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185505
ES_00017977	chr14	-	9195	29	Intergenic	novelGene_1200	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	50	junction_26	12.7375389286621	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATAGTATTGGGCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	10916311	10227722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877_10517058_10748553_10748659_10915440
ES_00017978	chr14	-	2713	16	NIC	ENSMUSG00000033885.16	novel	2812	18	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_15	35.466040094716	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	False	NA	0	True	AATAAA	-17	NA	14371562	14304655	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14371356
ES_00017979	chr14	-	3044	22	Fusion	ENSMUSG00000033885.16_ENSMUSG00000023156.5	novel	2812	18	NA	NA	36	0	multi-exon	FALSE	canonical	2	9	junction_17	53.2403100314498	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	False	NA	0	True	AATAAA	-17	NA	14389370	14304655	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ES_00017980	chr14	-	5086	16	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	104144	-8	37360	8	intron_retention	TRUE	canonical	3	451	junction_15	54.7530212256213	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTCTTGGAGTGGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	14547672	14518176	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215
ES_00017981	chr14	-	9080	47	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	0	8	at_least_one_novel_splicesite	TRUE	non_canonical	1	53	junction_1	134.338138105738	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTCTTGGAGTGGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	14651816	14518176	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_14518407_14518434_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547026_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ES_00017982	chr14	-	420	1	FSM	ENSMUSG00000049460.8	ENSMUST00000057361.8	823	1	338	65	338	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGTGAGTTTGATTTGA	NA	False	NA	NA	False	NA	NA	NA	14668227	14667807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14667800_14668200
ES_00017983	chr14	-	354	3	Intergenic	novelGene_1210	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	12	junction_1	3.5	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTTTCATTCTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	17320744	17315830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_17315982_17319160_17319275_17320655
ES_00017984	chr14	-	1750	5	ISM	ENSMUSG00000094132.8	ENSMUST00000166776.8	882	7	14676	-1061	14676	1061	3prime_fragment	FALSE	canonical	0	0	junction_3	12.8646803302686	272	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTATGCTTCAGCTTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	17599521	17592860	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386
ES_00017985	chr14	-	301	3	ISM	ENSMUSG00000091700.8	ENSMUST00000171305.2	1758	5	0	6395	0	-6381	5prime_fragment	FALSE	canonical	2	15	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACACTGAATTCAACATCA	NA	False	NA	NA	False	NA	NA	NA	17760477	17758489	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_17758493_17759447_17759611_17760342
ES_00017986	chr14	-	311	2	ISM	ENSMUSG00000079388.10	ENSMUST00000165466.8	1886	6	15158	3783	15158	-3783	internal_fragment	FALSE	canonical	2	4	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGGTAGGATGATGTGTA	NA	False	NA	NA	False	NA	NA	NA	18119852	18118867	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_18119046_18119719
ES_00017987	chr14	-	262	3	NNC	ENSMUSG00000079388.10	novel	1886	6	NA	NA	-28	-10051	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	2	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGTTCAAAAAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	18135038	18125135	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_18125198_18130129_18130268_18134976
ES_00017990	chr14	-	499	4	NNC	ENSMUSG00000091756.2	novel	1568	4	NA	NA	-13153	-4581	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	30	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGAACTGATAGAAGATA	NA	False	NA	NA	False	AATAAA	-36	NA	18519379	18504146	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_18504246_18505196_18505360_18515968_18516120_18519293
ES_00017991	chr14	-	222	2	ISM	ENSMUSG00000079402.10	ENSMUST00000167430.8	1933	7	-12	19602	-12	-19602	5prime_fragment	FALSE	canonical	3	20	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCGTATGTAAGTGGCTA	NA	False	NA	NA	False	NA	NA	NA	18817755	18816159	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_18816265_18817638
ES_00017993	chr14	-	376	3	ISM	ENSMUSG00000071613.12	ENSMUST00000170790.8	1755	5	925	4686	925	-4686	internal_fragment	FALSE	canonical	1	4	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAGCAAGAACATCTGT	NA	False	NA	NA	False	AAGAAA	-16	NA	19334851	19332849	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_19332989_19333664_19333797_19334746
ES_00017994	chr14	-	471	4	FSM	ENSMUSG00000093979.9	ENSMUST00000112595.3	471	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGACATGATCTCCCTCA	7823	False	NA	NA	False	NA	NA	NA	19619621	19614973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_19615002_19617552_19617736_19618411_19618544_19619493
ES_00017995	chr14	-	1025	9	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	37573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.88052853317	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAAAAGAAAAGAAAATTC	1688	False	NA	NA	False	NA	NA	NA	19873892	19823845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_19823871_19861980_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ES_00017996	chr14	-	1022	9	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	37573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.88052853317	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAAAAGAAAAGAAAATTC	1688	False	NA	NA	False	NA	NA	NA	19873892	19823845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_19823871_19861983_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ES_00017998	chr14	-	1527	7	ISM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	22569	7805	65	-2	internal_fragment	FALSE	canonical	3	105	junction_2	42.6435484243774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCTGTAATCTGGCTCG	NA	False	NA	-9	True	AATAAA	-17	NA	20574046	20557740	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027
ES_00017999	chr14	-	2818	13	NIC	ENSMUSG00000039308.7	novel	3305	13	NA	NA	448	-2	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	17.0414119785369	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTTGTCTGCTTCATT	NA	False	NA	-3	True	AATAAA	-13	NA	20779938	20773799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_20774429_20774528_20774632_20774815_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233
ES_00018000	chr14	-	3696	21	NIC	ENSMUSG00000021820.19	novel	3703	21	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	11.7867510366513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	0	True	AATAAA	-18	NA	20844068	20784942	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ES_00018001	chr14	-	3612	20	FSM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	0	-8	0	0	multi-exon	FALSE	canonical	2	6	junction_6	9.18507762457831	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	0	True	AATAAA	-18	NA	20844098	20784942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ES_00018004	chr14	-	548	3	FSM	ENSMUSG00000021768.16	ENSMUST00000120984.9	976	3	243	185	243	9	multi-exon	FALSE	canonical	1	1	junction_2	0.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTAGCCTCTGCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	21790226	21783647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_21783920_21784963_21785185_21790171
ES_00018005	chr14	-	892	7	FSM	ENSMUSG00000021782.15	ENSMUST00000170112.8	892	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	36.3990231859165	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAACGCAGTGGGTCCAA	NA	False	NA	NA	False	CATAAA	-1	NA	24200614	24194451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199538_24200206_24200341_24200579
ES_00018007	chr14	-	832	6	FSM	ENSMUSG00000025280.9	ENSMUST00000225526.2	893	6	0	61	0	-61	multi-exon	FALSE	canonical	3	105	junction_4	15.6511980372111	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGGTGTCAGGGTTATA	NA	False	NA	NA	False	NA	NA	NA	24529493	24521634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426
ES_00018008	chr14	-	386	4	NNC	ENSMUSG00000095304.10	novel	536	4	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_3	82.174610839764	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902887	25888827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_25888951_25889319_25889444_25891184_25891280_25902843
ES_00018009	chr14	-	220	2	Intergenic	novelGene_1222	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	634	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGGTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25914765	25912811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_25912978_25914711
ES_00018012	chr14	-	2532	17	NIC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	-22	7	combination_of_known_splicesites	FALSE	canonical	3	4	junction_14	24.638559084289	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCATGTTAGGGTAT	7504	False	NA	NA	False	AATAAA	-27	NA	27230439	27204356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27227594_27227621_27228607_27228673_27230378
ES_00018014	chr14	-	2849	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112211.9	2851	18	0	2	0	0	multi-exon	FALSE	canonical	3	7	junction_8	28.1631431086409	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCTGGCTGTGGGGACA	5423	False	NA	-7	True	AATAAA	-13	NA	30348165	30317314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324615_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ES_00018015	chr14	-	2135	15	FSM	ENSMUSG00000021948.18	ENSMUST00000112207.8	2139	15	4	0	4	0	multi-exon	FALSE	canonical	3	87	junction_13	15.3483363453968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATAATAGGCTGTATAT	427	False	NA	-7	True	NA	NA	NA	30329775	30317548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564
ES_00018018	chr14	-	718	3	FSM	ENSMUSG00000042354.8	ENSMUST00000228713.2	718	3	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_2	53.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	-2	True	AATAAA	-19	NA	30735573	30734390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30734592_30734679_30734747_30735123
ES_00018023	chr14	-	687	3	NNC	ENSMUSG00000058351.12	novel	426	2	NA	NA	-6	1577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATGATATGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	30850919	30844884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_30844916_30846464_30846791_30850589
ES_00018024	chr14	-	376	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	-65	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	-11	True	AATAAA	-18	NA	30850860	30846461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30846567_30850589
ES_00018026	chr14	-	1206	3	FSM	ENSMUSG00000021910.16	ENSMUST00000169906.2	1206	3	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_2	12.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATCCCACACCAAGAGT	9290	False	NA	NA	False	NA	NA	NA	30903427	30899162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30899670_30901792_30901843_30902778
ES_00018031	chr14	-	561	7	FSM	ENSMUSG00000014496.9	ENSMUST00000227878.2	561	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	58.2599538467224	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACGGCAAGTAAGTACCAC	7382	False	NA	NA	False	NA	NA	NA	31465191	31449600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31449733_31451841_31451911_31453985_31454050_31455640_31455724_31456928_31457044_31458709_31458796_31465179
ES_00018036	chr14	-	5740	12	NIC	ENSMUSG00000021936.15	novel	5756	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.14655787270487	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGTTCTTCATTGAAA	NA	False	NA	0	True	AATAAA	-21	NA	33169099	33099854	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_33104282_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
ES_00018038	chr14	-	3317	11	FSM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	23.9376272842569	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032323	33958989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
ES_00018039	chr14	-	687	3	FSM	ENSMUSG00000096001.3	ENSMUST00000179488.3	754	3	23	44	23	-44	multi-exon	TRUE	canonical	1	2	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGGAGGATACCAAAAGAAA	NA	False	NA	NA	False	AATGAA	-6	NA	36832035	36824142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_36824649_36829330_36829412_36831935
ES_00018040	chr14	-	1445	1	Intergenic	novelGene_1247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGGCAAATCTAACCAC	NA	False	NA	NA	False	AATAAA	-29	NA	42977672	42976227	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_42976200_42977700
ES_00018041	chr14	-	994	1	Genic_Genomic	ENSMUSG00000090389.3	novel	NA	NA	NA	NA	818	277	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCAAACATCTTTATGTT	NA	False	NA	NA	False	TATAAA	-22	NA	42979110	42978116	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_42978100_42979100
ES_00018042	chr14	-	976	2	NNC	ENSMUSG00000115536.2	novel	1072	2	NA	NA	1660	7	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTAAGAAACTTCTTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	44468609	44463666	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_44464468_44468434
ES_00018043	chr14	-	35456	1	FSM	ENSMUSG00000115801.2	ENSMUST00000226445.2	93147	1	14330	43361	14330	-43361	mono-exon	FALSE	NA	NA	NA	NA	NA	1214	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTATAGTAAAACACCACA	NA	False	NA	NA	False	NA	NA	NA	44860328	44824872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_44824900_44860300
ES_00018044	chr14	-	4028	21	FSM	ENSMUSG00000021830.15	ENSMUST00000022377.11	4028	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	7.23100961138899	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGGCTGCCTTATCT	NA	False	NA	NA	False	ATTAAA	-34	NA	45456851	45371904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45373428_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
ES_00018049	chr14	-	238	3	FSM	ENSMUSG00000021831.10	ENSMUST00000228836.2	598	3	0	360	0	-360	multi-exon	FALSE	canonical	3	583	junction_1	41.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGGATTTGGGTTAGAC	NA	False	NA	NA	False	NA	NA	NA	45539196	45536470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45536541_45537298_45537420_45539149
ES_00018050	chr14	-	313	5	FSM	ENSMUSG00000021831.10	ENSMUST00000227315.2	326	5	13	0	13	0	multi-exon	FALSE	canonical	2	35	junction_4	281.317436359711	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCGCATTGAAGAATGTG	NA	False	NA	NA	False	AGTAAA	-35	NA	45556215	45539365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45556159
ES_00018051	chr14	-	591	4	FSM	ENSMUSG00000037722.9	ENSMUST00000228451.2	581	4	0	-10	0	0	multi-exon	FALSE	canonical	2	2	junction_2	560.335812011174	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAACTTGAATCTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	45620900	45615610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45615944_45618393_45618474_45619012_45619141_45620850
ES_00018053	chr14	-	1453	1	FSM	ENSMUSG00000037712.18	ENSMUST00000228769.2	1453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAGAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	45721426	45719973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45720000_45721400
ES_00018055	chr14	-	5012	12	FSM	ENSMUSG00000037697.20	ENSMUST00000051310.13	5012	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	31.1368613098913	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGCTGAGTCTCTTGAG	NA	False	NA	-3	True	ATTAAA	-20	NA	45895600	45830630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_45833122_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45867036_45867211_45894678
ES_00018062	chr14	-	648	7	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	212.21091447478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059699	47049130	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_47049281_47051700_47051775_47052361_47052446_47053054_47053106_47053634_47053685_47054842_47054940_47059557
ES_00018065	chr14	-	1684	3	FSM	ENSMUSG00000037572.18	ENSMUST00000228810.2	706	3	-282	-696	-282	108	multi-exon	FALSE	canonical	3	309	junction_2	21.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGATAGGTGCTGCCC	NA	False	NA	NA	False	NA	NA	NA	47483009	47478292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47479270_47481259_47481399_47482441
ES_00018066	chr14	-	544	2	FSM	ENSMUSG00000037572.18	ENSMUST00000227041.2	203	2	-341	0	-341	0	multi-exon	FALSE	canonical	2	16	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGCTAAAAATGGTTATGA	NA	False	NA	NA	False	NA	NA	NA	47494059	47488303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47488349_47493560
ES_00018067	chr14	-	447	1	Genic_Genomic	ENSMUSG00000037572.18	novel	NA	NA	NA	NA	-1775	89	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATCACAGCACTCGGTA	NA	False	NA	NA	False	NA	NA	NA	47495493	47495046	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_47495000_47495500
ES_00018068	chr14	-	909	9	FSM	ENSMUSG00000037544.15	ENSMUST00000111778.4	909	9	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	142.128408050608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAATTCAACAACCTGA	116	False	NA	NA	False	NA	NA	NA	47649123	47635953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115
ES_00018070	chr14	-	2049	4	NNC	ENSMUSG00000021848.17	novel	2592	6	NA	NA	-81	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	13.7194104181711	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTCTAGTTTAATTT	NA	False	NA	-1	True	ATTAAA	-16	NA	48900410	48895133	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_48896784_48898755_48898908_48899900_48900117_48900379
ES_00018074	chr14	-	1785	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	5090	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	95.8524256344095	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTTTCTTTTCTTT	1962	False	NA	-4	True	AATAAA	-15	NA	51040099	51026709	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_51027470_51029429_51029764_51031014_51031332_51036514_51036656_51039866
ES_00018075	chr14	-	1590	6	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	45	-13	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	76.0168402395153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTACTTTTTCTTTTTTC	8921	False	NA	-12	True	AATAAA	-7	NA	51033140	51026717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51032164_51032234_51033092
ES_00018076	chr14	-	1411	4	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	30	-29	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	82.8908251188809	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAATAAAACTGCTTCTT	8906	False	NA	7	True	GATAAA	-30	NA	51033155	51026733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_51027470_51029468_51029764_51031014_51031332_51033092
ES_00018077	chr14	-	2615	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	3793	-4309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTATGAGTTGTTCTT	9272	False	NA	0	True	AATAAA	-16	NA	51041396	51035570	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_51036656_51039866
ES_00018078	chr14	-	8172	55	FSM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	4	-5	4	5	multi-exon	FALSE	canonical	2	4	junction_54	10.7386492216491	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGATTGTGTTCGCTGG	NA	False	NA	1	True	TATAAA	-29	NA	51108013	51061510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666_51078801_51079013_51079165_51079321_51079455_51080633_51080727_51081162_51081343_51081479_51081637_51081711_51081888_51081990_51082186_51082308_51082427_51082516_51082631_51082872_51082998_51083931_51084053_51084289_51084467_51085070_51085230_51087490_51087551_51088043_51088175_51089378_51089457_51090433_51090593_51091006_51091176_51091584_51091772_51091965_51092057_51093046_51093157_51098034_51098193_51098380_51098506_51099939_51100018_51100310_51100473_51100958_51101121_51103406_51103542_51104145_51104326_51105451_51106043_51107869
ES_00018082	chr14	-	923	12	ISM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	68	1666	10	0	5prime_fragment	FALSE	canonical	3	127	junction_3	11.2961633214611	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGCGGGCCTCCTAAGCC	NA	False	NA	NA	False	NA	NA	NA	52150877	52144405	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
ES_00018084	chr14	-	360	4	FSM	ENSMUSG00000004558.16	ENSMUST00000226364.2	435	4	0	75	0	-75	multi-exon	FALSE	canonical	3	23	junction_2	49.2769948578667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGACCGGGAGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	52150811	52148037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52148243_52148542_52148585_52148922_52149004_52150779
ES_00018085	chr14	-	481	2	FSM	ENSMUSG00000004558.16	ENSMUST00000228173.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGACCAGGGACAGGTAA	NA	False	NA	NA	False	NA	NA	NA	52150815	52148558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52149004_52150779
ES_00018086	chr14	-	2558	6	NIC	ENSMUSG00000049295.18	novel	3017	6	NA	NA	-77	-149	combination_of_known_splicesites	FALSE	canonical	3	14	junction_5	162.023948847076	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAAACGGGCGAGGTGGT	5637	False	NA	NA	False	NA	NA	NA	52257247	52244319	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252726_52256951
ES_00018088	chr14	-	2846	8	FSM	ENSMUSG00000060373.16	ENSMUST00000164655.2	2843	8	0	-3	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	1536.09765314579	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321874_52341345
ES_00018089	chr14	-	2711	8	NIC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	633	junction_2	1178.64943464794	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCCCTTTTCATAGTTG	8760	False	NA	-43	True	AATAAA	-10	NA	52341450	52310845	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ES_00018090	chr14	-	8507	38	NIC	ENSMUSG00000053754.15	novel	8509	38	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_15	12.8934499596762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTCTTCCTATGTTCTG	9242	False	NA	-9	True	AATAAA	-17	NA	52481966	52435607	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450201_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52481889
ES_00018093	chr14	-	1440	4	ISM	ENSMUSG00000022159.17	ENSMUST00000173046.8	576	7	9781	-899	213	899	3prime_fragment	FALSE	canonical	3	133	junction_2	4.18993502999218	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTCTTTTACCGAAT	NA	False	NA	NA	False	AAGAAA	-42	NA	52506350	52500267	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098
ES_00018097	chr14	-	864	1	FSM	ENSMUSG00000105194.2	ENSMUST00000100598.2	864	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAAGGCCATTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	53411047	53410183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_53410200_53411000
ES_00018100	chr14	-	2103	11	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	1	-400	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_10	54.1332614942052	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAGAAATGGACTTGGAA	NA	False	NA	NA	False	NA	NA	NA	54655236	54607301	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654833
ES_00018104	chr14	-	607	6	FSM	ENSMUSG00000023110.13	ENSMUST00000139964.2	609	6	2	0	2	0	multi-exon	FALSE	canonical	3	31	junction_5	283.695188538685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATGCGGGAATGGGTGG	8766	False	NA	NA	False	NA	NA	NA	54750911	54748457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750780
ES_00018106	chr14	-	811	7	FSM	ENSMUSG00000023110.13	ENSMUST00000147214.8	811	7	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_6	288.977171339806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGCATTTTCCTAACCA	4827	False	NA	NA	False	NA	NA	NA	54754850	54750829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754624
ES_00018107	chr14	-	519	3	FSM	ENSMUSG00000023110.13	ENSMUST00000138367.2	521	3	0	2	0	-2	multi-exon	FALSE	canonical	3	716	junction_1	84.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCCACAAGGGTTCTG	6562	False	NA	NA	False	NA	NA	NA	54753115	54752053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54752104_54752231_54752345_54752759
ES_00018108	chr14	-	1611	11	Fusion	ENSMUSG00000022177.10_ENSMUSG00000023110.13	novel	1587	10	NA	NA	0	566	multi-exon	FALSE	non_canonical	0	0	junction_1	138.748837832971	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGTGAGCGAGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	54791818	54753041	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_54753068_54779243_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
ES_00018109	chr14	-	622	3	FSM	ENSMUSG00000022193.8	ENSMUST00000227257.2	622	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	868	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGGAGTCCACAGTTA	8638	False	NA	-19	True	AATAAA	-16	NA	54855465	54851577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54851939_54854232_54854279_54855250
ES_00018110	chr14	-	2421	13	NIC	ENSMUSG00000022185.20	novel	2365	13	NA	NA	10	0	intron_retention	FALSE	canonical	3	46	junction_12	150.124947960024	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3833	False	NA	0	True	AATAAA	-25	NA	54891063	54879617	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54890670_54890736_54890991
ES_00018111	chr14	-	3168	9	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	27056	-6	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	6.32331993497087	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAGTGATGGAGTTAAT	2218	False	NA	NA	False	AATAAA	-13	NA	54992331	54959671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54992133
ES_00018113	chr14	-	2758	10	FSM	ENSMUSG00000022199.13	ENSMUST00000228119.3	2348	10	9	-419	0	-22	multi-exon	FALSE	canonical	2	4	junction_6	2.21665970480667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	55150551	55143782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55144817_55144975_55145088_55145342_55145561_55145717_55145824_55145958_55146105_55146279_55146446_55147127_55147283_55149505_55149610_55149698_55150188_55150323
ES_00018118	chr14	-	3031	20	FSM	ENSMUSG00000040701.17	ENSMUST00000151314.9	3031	20	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_15	29.9717318342013	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGAGTTTTGATGGCTGC	NA	False	NA	NA	False	AATAAA	-13	NA	55343991	55336031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
ES_00018120	chr14	-	606	1	FSM	ENSMUSG00000060680.3	ENSMUST00000074642.3	666	1	46	14	46	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCCTCCTCCCCGCCC	5256	False	NA	NA	False	AATAAA	-7	NA	55658200	55657594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55657600_55658200
ES_00018123	chr14	-	457	3	FSM	ENSMUSG00000002319.17	ENSMUST00000146528.8	451	3	0	-6	0	0	multi-exon	FALSE	canonical	2	37	junction_2	214.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGCAGCTGTGACGTCA	NA	False	NA	-3	True	AATAAA	-25	NA	55863874	55863172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55863499_55863610_55863681_55863813
ES_00018124	chr14	-	1063	2	FSM	ENSMUSG00000002319.17	ENSMUST00000141848.2	605	2	-147	-311	-147	-5	multi-exon	FALSE	canonical	3	466	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCAAAGTCCAGTGAGGC	NA	False	NA	NA	False	NA	NA	NA	55864036	55862861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55863499_55863610
ES_00018125	chr14	-	3848	30	FSM	ENSMUSG00000002319.17	ENSMUST00000135221.8	3824	30	0	-24	0	0	multi-exon	FALSE	canonical	0	0	junction_28	98.6432334976062	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGCAGCTGTGACGTCA	9472	False	NA	-3	True	AATAAA	-25	NA	55873414	55863172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866142_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
ES_00018128	chr14	-	2367	5	NNC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	165.610235190945	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5213	False	NA	51	True	AATAAA	-19	NA	55880790	55873421	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_55874070_55875479_55875651_55877841_55878028_55878423_55879046_55880050
ES_00018129	chr14	-	2172	5	NIC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	139.902644721249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5208	False	NA	51	True	AATAAA	-19	NA	55880795	55873421	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878726_55879046_55880050
ES_00018130	chr14	-	327	1	Genic_Genomic	ENSMUSG00000007589.10	novel	NA	NA	NA	NA	5111	51	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAACCATTCTCTTTTTCT	NA	False	NA	NA	False	AAAAAG	-31	NA	55912421	55912094	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_55912100_55912400
ES_00018131	chr14	-	3130	8	FSM	ENSMUSG00000007589.10	ENSMUST00000228264.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_5	42.7532073030068	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAAACAGCTTGTGTG	NA	False	NA	NA	False	TATAAA	-8	NA	55919243	55915268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ES_00018132	chr14	-	674	3	FSM	ENSMUSG00000007589.10	ENSMUST00000228683.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	16.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTCAGAGCACAAGAGG	NA	False	NA	NA	False	NA	NA	NA	55919176	55918270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55918360_55918456_55918547_55918681
ES_00018133	chr14	-	2492	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ES_00018134	chr14	-	2547	16	FSM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_12	87.1219834484959	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
ES_00018135	chr14	-	2153	15	FSM	ENSMUSG00000040472.16	ENSMUST00000228899.2	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_14	124.625418346175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGCCCTGACAACACTT	NA	False	NA	1	True	AATAAA	-39	NA	55959638	55953761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ES_00018139	chr14	-	1463	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227139.2	867	5	31	-627	0	0	multi-exon	FALSE	canonical	3	161	junction_3	15.0499169432924	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137654	56134739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270
ES_00018146	chr14	-	200	2	Intergenic	novelGene_1285	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	231	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTTATTTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	57010102	57007136	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_57007170_57009935
ES_00018147	chr14	-	207	2	Antisense	novelGene_ENSMUSG00000114500.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	148	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGTGTGATATATTAAAT	9578	False	NA	NA	False	NA	NA	NA	57122502	57077768	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_57077925_57122451
ES_00018148	chr14	-	8632	24	NIC	ENSMUSG00000021952.17	novel	8680	23	NA	NA	9	1	combination_of_known_junctions	FALSE	canonical	2	67	junction_22	80.9376057852328	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGTTTGACCATGTGT	NA	False	NA	-17	True	ACTAAA	-14	NA	57902683	57814976	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57880791_57880947_57885875_57885982_57902344
ES_00018149	chr14	-	4286	5	ISM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	45559	3	-674	-3	3prime_fragment	FALSE	canonical	2	7	junction_4	6.41774882649672	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCTCTTCATTTGTGGT	NA	False	NA	NA	False	ATTAAA	-11	NA	57938021	57927121	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372_57934956_57936714
ES_00018150	chr14	-	5116	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-76	-69	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTTTTAATGGTTTT	NA	False	NA	-11	True	AATAAA	-16	NA	58127809	58070228	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ES_00018152	chr14	-	980	8	NNC	ENSMUSG00000021973.10	novel	2329	12	NA	NA	15	-3032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	112.683772802748	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATATTTATTTGGGAA	NA	False	NA	NA	False	NA	NA	NA	58236704	58164434	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191671_58192456_58192488_58209107_58209247_58236486
ES_00018154	chr14	-	1547	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5097	28860	intron_retention	TRUE	non_canonical	0	0	junction_1	110.872900205596	78	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTGATGAATGACTTCAT	NA	False	NA	NA	False	NA	NA	NA	59608016	59555995	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_59556022_59586180_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ES_00018155	chr14	-	2588	11	NNC	ENSMUSG00000021982.15	novel	2202	10	NA	NA	0	32	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	42.8579047551324	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTTGTTGTTGTTGT	NA	False	NA	0	True	NA	NA	NA	59835395	59801392	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59822250_59822603_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ES_00018158	chr14	-	3758	15	NNC	ENSMUSG00000114797.2	novel	3913	15	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	59.493954417612	205	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTGTAGGTCTCA	NA	False	NA	-19	True	AATAAA	-15	NA	60488855	60455529	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_60457608_60459031_60459128_60460816_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ES_00018159	chr14	-	5000	2	FSM	ENSMUSG00000114797.2	ENSMUST00000223596.2	4987	2	0	-13	0	13	multi-exon	FALSE	canonical	3	241	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTCTTGTTTTTTATCT	NA	False	NA	NA	False	NA	NA	NA	60469586	60461423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_60466360_60469522
ES_00018160	chr14	-	3532	6	NNC	ENSMUSG00000060548.14	novel	1087	6	NA	NA	-6316	26	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	25.9615099714943	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATGTGTCAAGTCAAAAT	NA	False	NA	0	True	AATAAA	-21	NA	61219650	61201297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61219532
ES_00018161	chr14	-	2063	1	FSM	ENSMUSG00000097589.10	ENSMUST00000191650.2	1557	1	-762	256	-762	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTCGGCGCTGACTG	NA	False	NA	NA	False	NA	NA	NA	61857962	61855899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61855900_61858000
ES_00018162	chr14	-	863	2	FSM	ENSMUSG00000098183.2	ENSMUST00000182727.2	863	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCTGAAAACTGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	61864786	61863374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61863604_61864152
ES_00018163	chr14	-	2517	2	NNC	ENSMUSG00000097589.10	novel	637	5	NA	NA	1461	457	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTAGGGTAACTTGGAC	NA	False	NA	NA	False	TATAAA	-13	NA	61867880	61864786	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_61867108_61867684
ES_00018164	chr14	-	4551	1	FSM	ENSMUSG00000097589.10	ENSMUST00000193208.2	4098	1	4	-457	4	457	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTAGGGTAACTTGGAC	NA	False	NA	NA	False	TATAAA	-13	NA	61869337	61864786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61864800_61869300
ES_00018165	chr14	-	3321	3	FSM	ENSMUSG00000097589.10	ENSMUST00000180917.9	3544	3	35	188	0	-188	multi-exon	FALSE	canonical	2	7	junction_2	6	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAACTGAGCTCTTACA	NA	False	NA	NA	False	TATAAA	-4	NA	61886236	61869985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61873041_61880808_61880905_61886066
ES_00018166	chr14	-	1023	1	FSM	ENSMUSG00000114488.2	ENSMUST00000224324.2	701	1	-322	0	-322	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGTGCCCACCAAGACC	NA	False	NA	NA	False	NA	NA	NA	62778964	62777941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_62777900_62779000
ES_00018168	chr14	-	4912	19	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	0	-6197	intron_retention	FALSE	canonical	3	18	junction_14	145.868239208803	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACGTCTTCACAATTTCT	NA	False	NA	NA	False	ATTAAA	-6	NA	62998561	62929449	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62971076_62971300_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ES_00018169	chr14	-	3377	7	FSM	ENSMUSG00000021944.16	ENSMUST00000118022.8	3374	7	0	-3	0	3	multi-exon	FALSE	canonical	2	8	junction_5	3.67045259092421	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGAAGTCTTTTCTAACGG	NA	False	NA	NA	False	AATAAA	-22	NA	63482697	63436367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442205_63477984_63479095_63482599
ES_00018170	chr14	-	3402	7	FSM	ENSMUSG00000021944.16	ENSMUST00000067417.10	3400	7	1	-3	1	3	multi-exon	FALSE	canonical	2	7	junction_5	3.90156663690654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGAAGTCTTTTCTAACGG	NA	False	NA	NA	False	AATAAA	-22	NA	63482719	63436367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442208_63477984_63479095_63482599
ES_00018172	chr14	-	5913	7	NIC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	49.9355139710763	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGAGGTGTTTTGTTA	NA	False	NA	0	True	NA	NA	NA	65387304	65289508	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65317828_65317925_65387258
ES_00018173	chr14	-	5873	7	NNC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	64.9709336720831	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGAGGTGTTTTGTTA	NA	False	NA	0	True	NA	NA	NA	65387339	65289508	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313107_65315639_65317828_65317925_65387258
ES_00018174	chr14	-	5834	7	NNC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	64	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	52.5346446536844	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGGAGGTGTTTTG	NA	False	NA	-3	True	NA	NA	NA	65335490	65289511	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313107_65315639_65317828_65317925_65335445
ES_00018175	chr14	-	2863	12	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	0	39882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.161169069661	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTGACTTCAAAATTTGA	6430	False	NA	NA	False	NA	NA	NA	66071357	66016604	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_66016644_66056489_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
ES_00018176	chr14	-	3988	31	NIC	ENSMUSG00000059456.14	novel	4034	31	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	4.70413529661817	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGACTGTGTCGGTTATT	NA	False	NA	1	True	ATTAAA	-26	NA	66518422	66390705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395463_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040_66416096_66416279_66416343_66424891_66424972_66427022_66427111_66427504_66427684_66450760_66451002_66518331
ES_00018178	chr14	-	2025	1	Genic_Genomic	ENSMUSG00000022048.9	novel	NA	NA	NA	NA	63804	4	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCTGTATTGAGACTCC	NA	False	NA	3	True	AATAAA	-24	NA	67042333	67040308	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_67040300_67042300
ES_00018179	chr14	-	5826	4	ISM	ENSMUSG00000048922.19_ENSMUSG00000093726.2	ENSMUST00000131179.8	676	5	1085	-4619	1085	0	3prime_fragment	FALSE	canonical	0	0	junction_2	226.981643898062	624	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCCTGTGTCTGGGCCTT	651	False	NA	-2	True	NA	NA	NA	67933098	67910625	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_67915472_67917610_67917780_67931074_67931201_67932413
ES_00018180	chr14	-	3851	3	ISM	ENSMUSG00000048922.19	ENSMUST00000131179.8	676	5	1085	-1431	1085	-10	intron_retention	FALSE	canonical	0	0	junction_2	263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCAGTCATCCTTCCAG	651	False	NA	-44	True	ATTAAA	-6	NA	67933098	67913813	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_67915472_67917610_67917780_67931074
ES_00018182	chr14	-	2011	18	FSM	ENSMUSG00000044447.6	ENSMUST00000224823.2	3954	18	0	1943	0	-1943	multi-exon	FALSE	canonical	3	71	junction_7	8.7566089722016	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTGTGGGGACCACATG	NA	False	NA	NA	False	NA	NA	NA	68170891	68054961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
ES_00018183	chr14	-	5159	2	ISM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	35880	0	35735	0	3prime_fragment	FALSE	canonical	3	206	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	921	False	NA	-4	True	AATAAA	-16	NA	69486681	69479296	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_69482804_69485029
ES_00018185	chr14	-	410	2	FSM	ENSMUSG00000034194.19	ENSMUST00000138326.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGTGCTTGGGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	69937470	69935780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69936129_69937408
ES_00018186	chr14	-	3116	8	FSM	ENSMUSG00000034190.10	ENSMUST00000225036.2	3115	8	0	-1	0	1	multi-exon	FALSE	canonical	3	245	junction_5	16.4788051875178	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTGTTGTCTATTCT	NA	False	NA	-1	True	ATTAAA	-16	NA	69969990	69954447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_69955750_69955963_69956147_69956577_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ES_00018187	chr14	-	1915	7	FSM	ENSMUSG00000044551.14	ENSMUST00000058240.14	1986	7	58	13	58	-10	multi-exon	FALSE	canonical	2	3	junction_1	2.76887462097269	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCAATGTGTGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	70396893	70391866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70392726_70393298_70393406_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
ES_00018188	chr14	-	1939	10	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	12364	-464	12364	0	3prime_fragment	FALSE	canonical	3	14	junction_5	4.24554959434284	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCTGCTTCATTA	NA	False	NA	NA	False	AATAAA	-16	NA	70429708	70417916	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534
ES_00018189	chr14	-	3906	4	ISM	ENSMUSG00000022094.16	ENSMUST00000152067.8	2075	10	38182	-2816	991	2	3prime_fragment	FALSE	canonical	3	10	junction_2	1.63299316185545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGAGTCCCAAGTGTCG	NA	False	NA	2	True	AATAAA	-15	NA	70547698	70540915	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531
ES_00018190	chr14	-	209	2	FSM	ENSMUSG00000022094.16	ENSMUST00000145040.2	364	2	155	0	155	0	multi-exon	FALSE	canonical	3	9	junction_1	0	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCAGTGGTGTTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	70551219	70548385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70548425_70551049
ES_00018191	chr14	-	2209	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	-130	-47	0	8	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTCTGCTCACATCCC	1758	False	NA	1	True	AATAAA	-25	NA	70680860	70676188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
ES_00018193	chr14	-	3175	14	NIC	ENSMUSG00000022099.18	novel	2643	16	NA	NA	8	0	intron_retention	FALSE	canonical	2	74	junction_2	38.011209807186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864486	70841109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_70842295_70842407_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ES_00018194	chr14	-	3043	15	NIC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	-108	0	intron_retention	FALSE	canonical	2	64	junction_2	46.6837493029383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864602	70841109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_70842295_70842407_70842489_70842736_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ES_00018196	chr14	-	1420	6	NNC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	18.6826122370508	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879757	70873642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162_70879267_70879584
ES_00018197	chr14	-	967	4	ISM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	110	2055	96	-1749	5prime_fragment	FALSE	canonical	3	21	junction_2	17.4610678049451	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTCATGTGTATATG	NA	False	NA	NA	False	NA	NA	NA	70879598	70875697	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_70876014_70876241_70876420_70878971_70879009_70879162
ES_00018201	chr14	-	1343	1	Genic_Genomic	ENSMUSG00000090706.2	novel	NA	NA	NA	NA	-1282	-13441	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGTAGATCACCAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	73426043	73424700	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_73424700_73426000
ES_00018202	chr14	-	1410	2	NNC	ENSMUSG00000090706.2	novel	698	2	NA	NA	-2024	-13441	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	0	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGTAGATCACCAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	73426785	73424700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_73425028_73425702
ES_00018203	chr14	-	566	2	NNC	ENSMUSG00000090706.2	novel	698	2	NA	NA	-7227	-13441	at_least_one_novel_splicesite	FALSE	canonical	3	260	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGTAGATCACCAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	73431988	73424700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_73425028_73431749
ES_00018205	chr14	-	4310	18	FSM	ENSMUSG00000034893.10	ENSMUST00000226686.2	4311	18	0	1	0	-1	multi-exon	FALSE	canonical	3	97	junction_7	9.22273405934551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGCCACGTGTTTGT	NA	False	NA	NA	False	AATAAA	-37	NA	75979154	75939790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_75941501_75944529_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943_75977070_75977975_75978069_75979120
ES_00018206	chr14	-	4392	23	NNC	ENSMUSG00000034893.10	novel	4268	23	NA	NA	-136	-1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_20	22.2812599611096	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGCCACGTGTTTGT	NA	False	NA	NA	False	AATAAA	-37	NA	75992134	75939790	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943_75977070_75977975_75978069_75979120_75979196_75979780_75979916_75981005_75981068_75984492_75984640_75991704
ES_00018207	chr14	-	3717	8	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	11525	-3	-3184	3	3prime_fragment	FALSE	canonical	3	30	junction_4	5.473498303048	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCTTACAGTCATTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	76012952	75997553	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434
ES_00018209	chr14	-	1085	4	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	0	-4	0	2	intron_retention	FALSE	canonical	3	14	junction_2	40.4749579644281	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTGCGAGTTACCGA	NA	False	NA	0	True	AATAAA	-20	NA	76794298	76770251	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870
ES_00018210	chr14	-	330	1	FSM	ENSMUSG00000115143.2	ENSMUST00000227724.2	328	1	79	-81	79	81	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGGCGCTTTTCCTGACG	NA	False	NA	NA	False	NA	NA	NA	76874225	76873895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_76873900_76874200
ES_00018211	chr14	-	556	2	Genic_Genomic	ENSMUSG00000063556.6	novel	468	1	NA	NA	0	4585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGAGGATGTTTTTGTT	NA	False	NA	NA	False	AATGAA	-39	NA	77489754	77484701	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_77484727_77489223
ES_00018212	chr14	-	9414	12	NNC	ENSMUSG00000022016.18	novel	9364	12	NA	NA	-41	6	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_4	12.2271882389781	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCTTCTTTAGCATCC	NA	False	NA	NA	False	AATAAA	-23	NA	78774289	78729679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740466_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
ES_00018214	chr14	-	395	1	FSM	ENSMUSG00000115637.2	ENSMUST00000227710.2	363	1	2	-34	2	34	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTGTGCTTTGTCCTGGG	6867	False	NA	NA	False	NA	NA	NA	79343839	79343444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_79343400_79343800
ES_00018215	chr14	-	2154	16	FSM	ENSMUSG00000022020.16	ENSMUST00000163486.2	2154	16	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	60.0964410112797	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGAATTGAGGTTTGTT	NA	False	NA	NA	False	AATATA	-22	NA	79624546	79578416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_79578536_79580565_79580760_79582334_79582549_79588128_79588271_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461
ES_00018216	chr14	-	4512	27	NIC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	-7	10	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_5	54.2548773473531	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTCTCTTGCTCATA	NA	False	NA	NA	False	AATAAA	-34	NA	87378613	86892792	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87378433
ES_00018218	chr14	-	3424	1	Intergenic	novelGene_1309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTCTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	90319359	90315935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_90315900_90319400
ES_00018220	chr14	-	1120	1	FSM	ENSMUSG00000115505.2	ENSMUST00000228021.2	999	1	-56	-65	-56	65	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCATCTGAGCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	93433188	93432068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_93432100_93433200
ES_00018222	chr14	-	1295	3	Intergenic	novelGene_1311	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	38.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCTAAAGAGTTACAAGT	NA	False	NA	NA	False	NA	NA	NA	93453877	93451940	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_93452647_93452860_93453075_93453502
ES_00018223	chr14	-	1097	1	FSM	ENSMUSG00000115379.2	ENSMUST00000227743.2	423	1	1	-675	1	675	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-19	NA	95523091	95521994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_95522000_95523100
ES_00018224	chr14	-	2895	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	0	695	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCATATATTATCTGTC	NA	False	NA	NA	False	NA	NA	NA	99283570	99271284	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
ES_00018226	chr14	-	5099	28	FSM	ENSMUSG00000033004.17	ENSMUST00000161008.8	5099	28	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_23	9.27154740163962	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTAAAGTATTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	103392699	103350846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376155_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384466_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559
ES_00018227	chr14	-	14620	83	FSM	ENSMUSG00000033004.17	ENSMUST00000160758.8	14620	83	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_51	8.23914749579505	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTAAAGTATTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	103583854	103350846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384466_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559_103394204_103410002_103410126_103411222_103411356_103412201_103412427_103419789_103419931_103422267_103422385_103423019_103423118_103425934_103426051_103429002_103429059_103432019_103432230_103433673_103433819_103434680_103434854_103436075_103436126_103436868_103436957_103437509_103437629_103438647_103438874_103441757_103441977_103442612_103442714_103444071_103444215_103446184_103446364_103448693_103448826_103449958_103450166_103452755_103452948_103457362_103457576_103460345_103460621_103461702_103461896_103462854_103462952_103464906_103464991_103466790_103466926_103469961_103470054_103479547_103479676_103479757_103479884_103480479_103480653_103485182_103485337_103485797_103486003_103489844_103489963_103497631_103497714_103500137_103500258_103506793_103506902_103513224_103513327_103513808_103513955_103520033_103520239_103522685_103522845_103524641_103524807_103525978_103526184_103526979_103527057_103528453_103528593_103528724_103528799_103532595_103532693_103534328_103534401_103534615_103534859_103536102_103536300_103543625_103543780_103551734_103551951_103561105_103561182_103583651
ES_00018228	chr14	-	15233	85	FSM	ENSMUSG00000033004.17	ENSMUST00000159855.8	15233	85	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_32	8.86791299869259	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTAAAGTATTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	103584236	103350846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384466_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559_103394204_103407292_103407449_103410002_103410126_103411222_103411356_103412201_103412427_103414691_103414767_103419789_103419931_103422267_103422385_103423019_103423118_103425934_103426051_103429002_103429059_103432019_103432230_103433673_103433819_103434680_103434854_103436075_103436126_103436868_103436957_103437509_103437629_103438647_103438874_103441757_103441977_103442612_103442714_103444071_103444215_103446184_103446364_103448693_103448826_103449958_103450166_103452755_103452948_103457362_103457576_103460345_103460621_103461702_103461896_103462854_103462952_103464906_103464991_103466790_103466926_103469961_103470054_103479547_103479676_103479757_103479884_103480479_103480653_103485182_103485337_103485797_103486003_103489844_103489963_103497631_103497714_103500137_103500258_103506793_103506902_103513224_103513327_103513808_103513955_103520033_103520239_103522685_103522845_103524641_103524807_103525978_103526184_103526979_103527057_103528453_103528593_103528724_103528799_103532595_103532693_103534328_103534401_103534615_103534859_103536102_103536300_103543625_103543780_103551734_103551951_103561105_103561182_103583651
ES_00018233	chr14	-	7503	23	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	3633	22	NA	NA	40	0	multi-exon	FALSE	canonical	3	56	junction_11	53.0006237293721	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGTTAATGTTTTAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	105414660	105344186	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_105347239_105350904_105350964_105351555_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377875_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00018234	chr14	-	5921	22	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	4212	21	NA	NA	9	-468	multi-exon	FALSE	canonical	3	18	junction_1	58.9837211871154	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGAGTGTGATGATACT	NA	False	NA	NA	False	NA	NA	NA	105414691	105344654	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_105347239_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00018240	chr14	-	4348	23	NIC	ENSMUSG00000042156.17	novel	4079	22	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	3	9	junction_20	9.99721035469561	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCGACTGTGGCTGCTT	NA	False	NA	-6	True	AGTAAA	-14	NA	119162869	119113669	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161308_119161508_119161836_119161931_119162552
ES_00018244	chr14	-	7848	54	NIC	ENSMUSG00000025558.20	novel	7803	54	NA	NA	4	-78	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	12.5346085513012	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGCCCTGCTGTAATTA	NA	False	NA	2	True	AATAAA	-21	NA	122035245	121779635	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121814758_121814837_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835169_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ES_00018245	chr14	-	3285	17	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	1	1	junction_13	43.636236017214	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220652	123156382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123209151_123209369_123210581_123210698_123215485_123215699_123220583
ES_00018248	chr14	+	389	1	Intergenic	novelGene_1190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGGCATGAATCACACT	NA	False	NA	NA	False	NA	NA	NA	3922729	3923118	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_3922700_3923100
ES_00018249	chr14	+	266	1	Intergenic	novelGene_1191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCGTTCCTGTTAGC	NA	False	NA	NA	False	NA	NA	NA	4215001	4215267	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_4215000_4215300
ES_00018250	chr14	+	1299	1	Intergenic	novelGene_1194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCGGAAGGACTCTAAACT	NA	False	NA	NA	False	NA	NA	NA	4287831	4289130	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_4287800_4289100
ES_00018251	chr14	+	205	1	Intergenic	novelGene_1196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGCTCCTCACTGCT	NA	False	NA	NA	False	NA	NA	NA	4289616	4289821	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_4289600_4289800
ES_00018252	chr14	+	315	1	Intergenic	novelGene_1199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCTATTTTATAAAAGG	NA	False	NA	NA	False	NA	NA	NA	8470188	8470503	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_8470200_8470500
ES_00018253	chr14	+	952	1	Intergenic	novelGene_1206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCTTACAGCTCGAGCG	NA	False	NA	NA	False	NA	NA	NA	13725448	13726400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_13725400_13726400
ES_00018255	chr14	+	439	1	Intergenic	novelGene_1211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCTTGCAATTTGCAGC	NA	False	NA	NA	False	NA	NA	NA	19910668	19911107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_19910700_19911100
ES_00018256	chr14	+	227	1	Intergenic	novelGene_1214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGCTCTTTCAATGAAC	NA	False	NA	NA	False	NA	NA	NA	20941314	20941541	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_20941300_20941500
ES_00018257	chr14	+	203	1	Intergenic	novelGene_1226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTCAATTTCAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	26323841	26324044	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_26323800_26324000
ES_00018258	chr14	+	203	1	Intergenic	novelGene_1227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATATTCTTAAACAAAG	NA	False	NA	NA	False	NA	NA	NA	26439682	26439885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_26439700_26439900
ES_00018259	chr14	+	249	1	Intergenic	novelGene_1233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	29765205	29765454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_29765200_29765500
ES_00018260	chr14	+	203	1	Intergenic	novelGene_1244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACACTCATTTTTTCATAA	NA	False	NA	NA	False	AAAAAG	-6	NA	39902765	39902968	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_39902800_39903000
ES_00018262	chr14	+	212	1	Intergenic	novelGene_1253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTCTTGCTTCTTGCTCC	NA	False	NA	NA	False	NA	NA	NA	45806903	45807115	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_45806900_45807100
ES_00018263	chr14	+	250	1	Intergenic	novelGene_1254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTGCAGTCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	47414149	47414399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_47414100_47414400
ES_00018265	chr14	+	319	1	Intergenic	novelGene_1259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTTTTTTTTAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	48955746	48956065	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_48955700_48956100
ES_00018266	chr14	+	207	1	Intergenic	novelGene_1264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	377	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTGAGTAAGCCAGAG	5909	False	NA	NA	False	NA	NA	NA	51226198	51226405	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_51226200_51226400
ES_00018267	chr14	+	212	1	Intergenic	novelGene_1269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTCAATTCTTCTGACA	NA	False	NA	NA	False	NA	NA	NA	52367400	52367612	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_52367400_52367600
ES_00018268	chr14	+	212	1	Intergenic	novelGene_1277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCGCAATAACAGAATACAA	NA	False	NA	NA	False	NA	NA	NA	55842834	55843046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_55842800_55843000
ES_00018269	chr14	+	233	1	Intergenic	novelGene_1279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAGCATATACTAAATAG	NA	False	NA	NA	False	CATAAA	-15	NA	56058830	56059063	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_56058800_56059100
ES_00018270	chr14	+	218	1	Intergenic	novelGene_1284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGTACTAAATAAAACAG	NA	False	NA	NA	False	NA	NA	NA	56973428	56973646	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_56973400_56973600
ES_00018272	chr14	+	272	1	Intergenic	novelGene_1294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGACCCAGGGACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65340621	65340893	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_65340600_65340900
ES_00018274	chr14	+	205	1	Intergenic	novelGene_1299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTAAACACACCATTAAA	NA	False	NA	NA	False	NA	NA	NA	76588463	76588668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_76588500_76588700
ES_00018275	chr14	+	202	1	Intergenic	novelGene_1301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTCAAAGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	81711410	81711612	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_81711400_81711600
ES_00018276	chr14	+	208	1	Intergenic	novelGene_1303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAGAGTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	86241242	86241450	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_86241200_86241400
ES_00018277	chr14	+	212	1	Intergenic	novelGene_1307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATGTTTTCTAACAAGT	NA	False	NA	NA	False	NA	NA	NA	89755491	89755703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_89755500_89755700
ES_00018278	chr14	+	203	1	Intergenic	novelGene_1310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAACCACAATTGAATGT	NA	False	NA	NA	False	NA	NA	NA	91908286	91908489	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_91908300_91908500
ES_00018279	chr14	+	212	1	Intergenic	novelGene_1313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATGCTCCAGGTTACCA	NA	False	NA	NA	False	NA	NA	NA	99408850	99409062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_99408800_99409100
ES_00018280	chr14	+	202	1	Intergenic	novelGene_1317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTCTTCTTCTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	99598806	99599008	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_99598800_99599000
ES_00018281	chr14	+	201	1	Intergenic	novelGene_1318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGAGGGGCCTTGATCTTTT	NA	False	NA	NA	False	NA	NA	NA	99634651	99634852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_99634700_99634900
ES_00018283	chr14	+	1880	5	NIC	ENSMUSG00000058317.13	novel	1523	6	NA	NA	13	62	combination_of_known_junctions	FALSE	canonical	3	29	junction_2	91.2890327476417	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTCTTCCCAGTTCATT	NA	False	NA	71	True	NA	NA	NA	3575932	3896183	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_3576469_3581246_3581431_3839264_3839398_3882697_3882846_3895304
ES_00018284	chr14	+	431	4	FSM	ENSMUSG00000012405.17	ENSMUST00000147121.2	505	4	74	0	74	0	multi-exon	FALSE	canonical	1	2	junction_1	6685.29522326593	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATTGTGGGGCTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	4198378	4200392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4198478_4199235_4199418_4199652_4199790_4200379
ES_00018285	chr14	+	565	2	FSM	ENSMUSG00000012405.17	ENSMUST00000224196.2	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	16172	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTTCTGCTTAAAGGT	NA	False	NA	-3	True	AATAAA	-12	NA	4199576	4200731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_4199790_4200379
ES_00018287	chr14	+	1249	7	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	-467	0	combination_of_known_junctions	FALSE	canonical	3	208	junction_1	178.95995827745	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8514672	8520749	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ES_00018288	chr14	+	201	2	ISM	ENSMUSG00000060579.14	ENSMUST00000161302.8	860	7	15	871396	15	-551381	5prime_fragment	FALSE	canonical	3	14	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGTAAAAGAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	12016329	12048285	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_12016405_12048159
ES_00018290	chr14	+	336	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACAGCAAAAGGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13669437	13669773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_13669400_13669800
ES_00018291	chr14	+	2391	13	FSM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-1	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	45.7574371611387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGACTTGTCAAAACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	13803532	13967352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13966754
ES_00018292	chr14	+	1623	4	FSM	ENSMUSG00000021750.17	ENSMUST00000120411.9	2093	4	417	53	417	-53	multi-exon	FALSE	canonical	0	0	junction_3	1.4142135623731	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCTATTTTGAAGACCC	NA	False	NA	NA	False	NA	NA	NA	14152166	14172164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_14152269_14168539_14168715_14170106_14170264_14170975
ES_00018293	chr14	+	1813	6	FSM	ENSMUSG00000093985.8	ENSMUST00000100895.10	1813	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.8	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCT	9511	False	NA	NA	False	AATAAA	-17	NA	15447173	15463658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_15447231_15457001_15457137_15457868_15458032_15458981_15459114_15459789_15459973_15462515
ES_00018294	chr14	+	345	3	NNC	ENSMUSG00000090691.4	novel	2053	7	NA	NA	1527	-6869	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	12	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGGAGAGGCACCCCAG	NA	False	NA	NA	False	NA	NA	NA	15581337	15594402	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_15581449_15584666_15584818_15594319
ES_00018295	chr14	+	2007	7	NNC	ENSMUSG00000094370.8	novel	1955	7	NA	NA	7	22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.70820393249937	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTCAAATATACAATCACT	NA	False	NA	NA	False	AATAAA	-39	NA	16728202	16751459	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_16728281_16733915_16734067_16743824_16743960_16744691_16744855_16745804_16745937_16746611_16746795_16750294
ES_00018296	chr14	+	1813	6	FSM	ENSMUSG00000094825.9	ENSMUST00000180867.8	1813	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.49947366963033	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	17014305	17031708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_17014363_17024098_17024234_17024965_17025129_17026077_17026210_17026884_17027068_17030565
ES_00018297	chr14	+	3995	17	FSM	ENSMUSG00000021806.5	ENSMUST00000225791.2	3976	17	-19	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	123.598391979831	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATGTAGACCCGCTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	19801332	19856198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910
ES_00018299	chr14	+	2259	7	NIC	ENSMUSG00000039599.17	novel	4483	8	NA	NA	1	1116	combination_of_known_junctions	FALSE	canonical	3	59	junction_5	78.3207436691512	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCTTGCTTGAAATTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	20398230	20419251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20417913
ES_00018302	chr14	+	229	2	Antisense	novelGene_ENSMUSG00000021816.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAACATACCATG	NA	False	NA	NA	False	NA	NA	NA	20532358	20577329	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_20532516_20577257
ES_00018303	chr14	+	2713	1	FSM	ENSMUSG00000099966.2	ENSMUST00000190699.2	3040	1	-8	335	-8	-335	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGTTTCTTTTTCCACTG	2583	False	NA	NA	False	NA	NA	NA	20691068	20693781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20691100_20693800
ES_00018307	chr14	+	5951	26	FSM	ENSMUSG00000021819.12	ENSMUST00000224751.2	5951	26	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_11	15.0973375136148	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGGGTCTTTGCCTTC	NA	False	NA	17	True	TATAAA	-25	NA	20757720	20773687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_20758125_20760704_20760859_20761095_20761191_20761525_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764936_20766019_20766131_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ES_00018309	chr14	+	289	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGATGATCCATTTTA	NA	False	NA	4	True	AATAAA	-15	NA	21102678	21103988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21102769_21103789
ES_00018310	chr14	+	7491	17	FSM	ENSMUSG00000021767.20	ENSMUST00000182964.3	7699	17	208	0	172	0	multi-exon	FALSE	canonical	1	1	junction_1	58.8578796763866	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGATCTTCATTTTGC	NA	False	NA	13	True	AATAAA	-23	NA	21551128	21722546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_21551147_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675284_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ES_00018312	chr14	+	9986	10	NIC	ENSMUSG00000021767.20	novel	7649	17	NA	NA	-32	0	intron_retention	FALSE	canonical	3	166	junction_5	13.1412083928645	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGATCTTCATTTTGC	NA	False	NA	13	True	AATAAA	-23	NA	21672577	21722546	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ES_00018313	chr14	+	6956	7	NNC	ENSMUSG00000021770.12	novel	1574	6	NA	NA	5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	12.9453981527543	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTTGTTATAACCCTT	2636	False	NA	14	True	AATAAA	-18	NA	21800620	21848794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004_21846599_21846618
ES_00018319	chr14	+	481	3	FSM	ENSMUSG00000007817.16	ENSMUST00000161766.8	2225	3	76	1668	-6	-1668	multi-exon	FALSE	canonical	3	8	junction_2	0.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTGCACATTACTGCTT	358	False	NA	NA	False	NA	NA	NA	25459684	25537248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_25459981_25503078_25503184_25537168
ES_00018320	chr14	+	6839	20	ISM	ENSMUSG00000007817.16	ENSMUST00000007961.15	5397	24	116866	-2028	-31224	4	3prime_fragment	FALSE	canonical	3	14	junction_1	19.8628259811055	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGAGTTAGCTGTTTTA	411	False	NA	NA	False	AATAAA	-20	NA	25576556	25667171	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_25576669_25581991_25582098_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647158_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ES_00018321	chr14	+	1672	4	FSM	ENSMUSG00000095975.4	ENSMUST00000184016.3	1649	4	-23	0	-23	0	multi-exon	FALSE	canonical	1	2	junction_1	2.94392028877595	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACTTCCAAACCAAAATA	NA	False	NA	NA	False	AATAAA	-6	NA	25942939	25956780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_25943025_25952339_25952543_25955303_25955421_25955513
ES_00018322	chr14	+	425	3	Intergenic	novelGene_1229	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATATACTTTTAATTCCA	NA	False	NA	NA	False	NA	NA	NA	26668076	26717399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_26668099_26674356_26674377_26717016
ES_00018324	chr14	+	4767	23	NIC	ENSMUSG00000040651.10	novel	7590	24	NA	NA	-83	-2572	combination_of_known_splicesites	FALSE	canonical	3	82	junction_22	59.3898035047312	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAAGTATTCAGCAATGT	8845	False	NA	NA	False	NA	NA	NA	27150707	27202940	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202872
ES_00018326	chr14	+	5390	9	NIC	ENSMUSG00000021962.10	novel	3194	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	24	junction_5	46.725093632865	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAAATTCTAATTGTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	30201633	30249013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30240875_30241635_30243546_30243613_30244684_30244904_30245182
ES_00018327	chr14	+	465	5	FSM	ENSMUSG00000021957.8	ENSMUST00000162356.2	465	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	998.822150084789	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCACTGGCTCCCTGGGCC	NA	False	NA	NA	False	NA	NA	NA	30271167	30282563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30271338_30279602_30279646_30280677_30280796_30281708_30281823_30282543
ES_00018329	chr14	+	629	4	FSM	ENSMUSG00000021922.18	ENSMUST00000227899.2	795	4	159	7	159	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCCAGGCAGTTGATGT	NA	False	NA	NA	False	AATAAA	-12	NA	30621276	30623799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_30621446_30622841_30622997_30623091_30623189_30623591
ES_00018330	chr14	+	5290	29	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	0	235	combination_of_known_splicesites	FALSE	canonical	3	38	junction_13	56.8211816462265	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATATGTATGTTTTAC	8247	False	NA	NA	False	AATGAA	-34	NA	30741126	30841311	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30778192_30778238_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30838969_30839041_30839156_30839374_30840685
ES_00018331	chr14	+	7788	30	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_27	51.3041802006836	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8247	False	NA	14	True	AATAAA	-21	NA	30741126	30843549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30832371_30832537_30838969_30839041_30839156_30839374_30840685
ES_00018332	chr14	+	7920	32	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_15	48.5930884119871	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8247	False	NA	14	True	AATAAA	-21	NA	30741126	30843549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30778192_30778238_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ES_00018335	chr14	+	7682	30	NIC	ENSMUSG00000042323.18	novel	7907	31	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	3	48	junction_1	41.828936499227	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8300	False	NA	14	True	AATAAA	-21	NA	30741179	30843549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ES_00018336	chr14	+	7600	29	NIC	ENSMUSG00000042323.18	novel	5154	30	NA	NA	15	14	combination_of_known_splicesites	FALSE	canonical	3	48	junction_1	44.6827821471332	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTGGTTCTGTTTAAA	8300	False	NA	28	True	AATAAA	-35	NA	30741179	30843563	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_30741251_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ES_00018341	chr14	+	508	4	FSM	ENSMUSG00000054051.8	ENSMUST00000228035.2	473	4	-35	0	-35	0	multi-exon	FALSE	canonical	0	0	junction_1	40.8275506109403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATGGAGCAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	32270072	32280495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_32270163_32274531_32274668_32279795_32279967_32280384
ES_00018342	chr14	+	4932	8	NNC	ENSMUSG00000041445.10	novel	3974	7	NA	NA	-9008	-10	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	18.2208671582886	51	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCCAAAGCTCTGCCTG	2396	False	NA	-4	True	AATAAA	-6	NA	34088413	34126234	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_34088446_34096485_34097736_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
ES_00018344	chr14	+	1270	3	Intergenic	novelGene_1241	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCAGTTTTTTTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	34496523	34500226	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_34496610_34498960_34499067_34499148
ES_00018345	chr14	+	2064	5	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14055	-237	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	8.44097150806707	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATAATGACTTCCAAGCC	NA	False	NA	NA	False	NA	NA	NA	40986706	41010535	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_40987404_41001646_41001810_41002809_41002942_41003619_41003802_41009645
ES_00018346	chr14	+	824	5	Antisense	novelGene_ENSMUSG00000091657.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_3	1.92028643696715	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTGAAGGCTCTTAT	NA	False	NA	NA	False	ATTAAA	-29	NA	41308699	41342336	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_41308811_41314264_41314409_41325617_41325689_41328619_41328763_41341981
ES_00018348	chr14	+	909	4	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	-40093	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	91.9710099252295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAATACTTGATATTGAAA	NA	False	NA	NA	False	AGTAAA	-22	NA	41761472	41785683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41785412
ES_00018349	chr14	+	1574	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	-2	intron_retention	TRUE	canonical	3	16	junction_2	69.184937345896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTCTTCACTCTTAAGA	NA	False	NA	NA	False	AATAAA	-11	NA	41761472	41825774	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_41761595_41761988_41762060_41766142_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ES_00018350	chr14	+	920	2	Intergenic	novelGene_1246	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGCAAGAATGTGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	41955846	41957362	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_41955902_41956497
ES_00018351	chr14	+	1753	5	FSM	ENSMUSG00000094954.2	ENSMUST00000172163.2	1751	5	46	-48	46	48	multi-exon	TRUE	canonical	2	2	junction_3	3.56195171219375	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTCCAATGTTCTATCA	NA	False	NA	NA	False	TATAAA	-36	NA	42285883	42294127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_42285994_42286712_42286876_42287840_42287973_42288667_42288850_42292961
ES_00018352	chr14	+	1010	3	Antisense	novelGene_ENSMUSG00000090481.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_2	11.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATATCTATGATCCATTT	NA	False	NA	NA	False	NA	NA	NA	42300602	42317525	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_42300714_42304885_42305330_42317070
ES_00018353	chr14	+	355	1	FSM	ENSMUSG00000114783.2	ENSMUST00000224668.2	208	1	-230	83	-230	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCACTTGGGAGTGCAG	NA	False	NA	NA	False	NA	NA	NA	42688376	42688731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_42688400_42688700
ES_00018355	chr14	+	1454	2	Intergenic	novelGene_1248	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACTAAAAAATTATAAATC	NA	False	NA	NA	False	ACTAAA	-18	NA	42976233	42977748	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_42977305_42977365
ES_00018356	chr14	+	872	5	Fusion	ENSMUSG00000115262.2_ENSMUSG00000094151.2	novel	690	2	NA	NA	-304	-1074	multi-exon	FALSE	canonical	1	3	junction_1	9.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAGATAACATCTATA	NA	False	NA	NA	False	NA	NA	NA	42988556	43044371	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_+_42988898_43038207_43038371_43039360_43039493_43040175_43040358_43044317
ES_00018357	chr14	+	373	1	FSM	ENSMUSG00000114619.2	ENSMUST00000224591.2	233	1	-174	34	0	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGGAGAATTCCAGCACC	NA	False	NA	NA	False	NA	NA	NA	43026084	43026457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_43026100_43026500
ES_00018358	chr14	+	2096	7	Fusion	ENSMUSG00000115483.2_ENSMUSG00000090634.2	novel	1764	5	NA	NA	-52655	11	multi-exon	TRUE	non_canonical	0	0	junction_6	22.1766894633883	95	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAACACAGACATGTAT	NA	False	NA	NA	False	AATAAA	-29	NA	43063450	43163479	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_+_43063483_43066563_43067007_43116990_43117154_43118142_43118275_43118957_43119140_43123125_43123774_43162983
ES_00018359	chr14	+	1711	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3311	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	16.5283846760656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGCTCTAGAAAACA	NA	False	NA	NA	False	AATAAA	-18	NA	43129181	43163468	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_43129304_43132676_43132821_43157302_43157435_43158114_43158297_43162337
ES_00018360	chr14	+	742	4	Antisense	novelGene_ENSMUSG00000091481.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_3	71.9506003372376	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAGCCGAATAAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	43169938	43199665	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_43170061_43170454_43170526_43173084_43173568_43199599
ES_00018361	chr14	+	1395	2	FSM	ENSMUSG00000049092.12	ENSMUST00000147957.2	1395	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGATACTGAACTTT	NA	False	NA	NA	False	AATAAA	-14	NA	45457175	45461379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_45457876_45460684
ES_00018362	chr14	+	4147	1	FSM	ENSMUSG00000049092.12	ENSMUST00000227086.2	4997	1	849	1	395	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGTTACTATTCAATAGAA	NA	False	NA	NA	False	AATAAA	-13	NA	45458022	45462169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_45458000_45462200
ES_00018364	chr14	+	201	2	Antisense	novelGene_ENSMUSG00000037712.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTATTTCTGATAGCAG	NA	False	NA	NA	False	NA	NA	NA	45653457	45698007	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_45653482_45697830
ES_00018365	chr14	+	484	2	NNC	ENSMUSG00000082475.3	novel	508	3	NA	NA	8825	54022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAGAAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	45950817	46005202	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_45951267_46005167
ES_00018366	chr14	+	1500	1	FSM	ENSMUSG00000083169.2	ENSMUST00000117504.2	1357	1	215	-358	215	358	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATATACACACA	NA	False	NA	NA	False	NA	NA	NA	46265099	46266599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_46265100_46266600
ES_00018367	chr14	+	748	2	FSM	ENSMUSG00000044285.9	ENSMUST00000227415.2	750	2	-10	12	-10	-12	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGAAGGTGGACTCCAG	NA	False	NA	NA	False	NA	NA	NA	46321474	46322445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_46321774_46321996
ES_00018368	chr14	+	959	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-173	-1	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAAGAAGGTGGACTC	NA	False	NA	NA	False	AATAAA	-45	NA	46321483	46322442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_46321500_46322400
ES_00018369	chr14	+	1726	1	FSM	ENSMUSG00000086746.3	ENSMUST00000228667.2	1726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTCATCTCCTGGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	46625009	46626735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_46625000_46626700
ES_00018370	chr14	+	634	7	FSM	ENSMUSG00000037628.11	ENSMUST00000226621.2	634	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	78.2254576351089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	False	NA	2	True	AATAAA	-17	NA	46998051	47008977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ES_00018371	chr14	+	1709	1	FSM	ENSMUSG00000115003.2	ENSMUST00000226700.2	898	1	-916	105	-916	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCGGAGTTTGCGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	47024173	47025882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47024200_47025900
ES_00018372	chr14	+	1010	6	NIC	ENSMUSG00000050335.18	novel	646	5	NA	NA	493	-28	combination_of_known_junctions	TRUE	canonical	3	5	junction_1	34.931933814205	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCATTTAATAAAGTCTC	NA	False	NA	-27	True	NA	NA	NA	47605700	47623223	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47605826_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ES_00018374	chr14	+	272	1	FSM	ENSMUSG00000115571.2	ENSMUST00000228790.2	249	1	18	-41	18	41	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGGTGGTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-2	NA	47807000	47807272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47807000_47807300
ES_00018375	chr14	+	4653	41	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-243	0	at_least_one_novel_splicesite	TRUE	canonical	3	64	junction_2	170.394424791423	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886524	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47886897_47901212_47901773_47904755_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00018376	chr14	+	4558	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-176	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_39	182.114355271056	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886591	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
ES_00018377	chr14	+	4261	39	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	152.220744725066	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCACTCTGATTGTCGT	NA	False	NA	21	True	AATAAA	-21	NA	47886767	47974018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00018378	chr14	+	4448	41	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	198.118373706226	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCACTCTGATTGTCGT	NA	False	NA	21	True	AATAAA	-21	NA	47886767	47974018	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47886897_47887417_47887520_47901211_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00018379	chr14	+	4478	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_40	210.909453320613	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACTCTGATTGTCGTTG	NA	False	NA	23	True	AATAAA	-23	NA	47886767	47974020	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971728_47973556
ES_00018380	chr14	+	4348	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	166.916953527795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886782	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00018381	chr14	+	4484	42	FSM	ENSMUSG00000021843.18	ENSMUST00000022391.14	4484	42	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_41	205.185118315409	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACTCTGATTGTCGTTG	2353	False	NA	23	True	AATAAA	-23	NA	47901212	47974020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971722_47973556
ES_00018382	chr14	+	3878	39	NNC	ENSMUSG00000021843.18	novel	3918	39	NA	NA	300	0	at_least_one_novel_splicesite	FALSE	canonical	3	107	junction_2	179.449913536184	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	2684	False	NA	17	True	AATAAA	-17	NA	47901543	47974014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_47901773_47904752_47904891_47907587_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ES_00018383	chr14	+	2994	12	FSM	ENSMUSG00000036339.19	ENSMUST00000133744.8	2996	12	2	0	2	0	multi-exon	TRUE	canonical	3	30	junction_9	4.93595344018117	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAAGGAAAGGAAAGG	NA	False	NA	NA	False	NA	NA	NA	48683810	48738969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_48684061_48688599_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748_48733921_48737463
ES_00018384	chr14	+	930	4	FSM	ENSMUSG00000036291.7	ENSMUST00000227066.2	936	4	6	0	6	0	multi-exon	FALSE	canonical	3	13	junction_3	49.5042085752986	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGATTTCTTATGCT	NA	False	NA	NA	False	AATAAA	-9	NA	49318467	49328255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_49318587_49321315_49321413_49323701_49323817_49327656
ES_00018386	chr14	+	220	2	FSM	ENSMUSG00000036023.7	ENSMUST00000228833.2	220	2	0	0	0	0	multi-exon	FALSE	canonical	3	870	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAGAGAAGGAAGGGGAG	3250	False	NA	NA	False	NA	NA	NA	51056801	51057193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51056946_51057117
ES_00018388	chr14	+	1020	2	FSM	ENSMUSG00000072115.12	ENSMUST00000069011.9	1094	2	0	74	0	-74	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAGAAAAACGAACTATCTA	NA	False	NA	NA	False	NA	NA	NA	51333456	51339388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_51333931_51338842
ES_00018389	chr14	+	635	2	Genic_Genomic	ENSMUSG00000115280.2	novel	1362	1	NA	NA	375	-238	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCATCCAGGGAACCAGG	NA	False	NA	NA	False	AAAAAG	-42	NA	51596434	51597183	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_+_51596705_51596818
ES_00018391	chr14	+	1844	13	FSM	ENSMUSG00000004561.15	ENSMUST00000168413.8	1844	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	44.5586380202787	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122332	52129317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ES_00018393	chr14	+	472	3	FSM	ENSMUSG00000004561.15	ENSMUST00000077846.7	472	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTTAGTACTCCCTTAC	NA	False	NA	NA	False	NA	NA	NA	52124635	52126470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52124762_52125429_52125504_52126198
ES_00018394	chr14	+	4843	24	FSM	ENSMUSG00000004562.17	ENSMUST00000100639.11	4843	24	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_22	8.08906003498104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGACTCTGAGGAGCTC	NA	False	NA	2	True	ATTAAA	-14	NA	52222320	52243079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52242068_52242200_52242335_52242357_52242445_52242493_52242797
ES_00018395	chr14	+	5108	24	FSM	ENSMUSG00000004562.17	ENSMUST00000182909.8	5108	24	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_21	8.94173536736366	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTGAGGAGCTCGCGCA	NA	False	NA	7	True	ATTAAA	-19	NA	52222365	52243084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52241429_52241574_52242068_52242200_52242445_52242493_52242615
ES_00018397	chr14	+	322	1	FSM	ENSMUSG00000105666.2	ENSMUST00000199341.2	750	1	80	348	80	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACATCAAGGAGTATGT	NA	False	NA	NA	False	NA	NA	NA	53703615	53703937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_53703600_53703900
ES_00018398	chr14	+	331	2	FSM	ENSMUSG00000093966.3	ENSMUST00000103655.3	411	2	80	0	80	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGCTCCCAGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	53836364	53836867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_53836417_53836588
ES_00018399	chr14	+	422	2	FSM	ENSMUSG00000087666.4	ENSMUST00000103671.4	426	2	4	0	4	0	multi-exon	FALSE	canonical	3	9	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCTCCCCAGGCACC	NA	False	NA	NA	False	NA	NA	NA	54032817	54033420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_54032964_54033144
ES_00018401	chr14	+	211	1	Intergenic	novelGene_1274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTCCGTCAATAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	54837527	54837738	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_54837500_54837700
ES_00018403	chr14	+	215	2	Antisense	novelGene_ENSMUSG00000057156.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1339	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGATCCTTCTCAAGGACTT	3599	False	NA	NA	False	NA	NA	NA	55098673	55109287	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_55098731_55109129
ES_00018406	chr14	+	2561	15	NNC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	36.4613298088341	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797938	55807518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_55798085_55798669_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ES_00018408	chr14	+	587	3	FSM	ENSMUSG00000002326.7	ENSMUST00000227178.2	625	3	38	0	35	0	multi-exon	FALSE	canonical	3	130	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCCTGGGCCTACCCT	NA	False	NA	NA	False	NA	NA	NA	55909874	55912866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55910259_55910406_55910527_55912783
ES_00018409	chr14	+	697	1	FSM	ENSMUSG00000002326.7	ENSMUST00000226787.2	1807	1	954	156	829	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGATTTGGGGAATTGGC	NA	False	NA	NA	False	NA	NA	NA	55910668	55911365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_55910700_55911400
ES_00018410	chr14	+	3941	10	NNC	ENSMUSG00000023411.13	novel	3775	9	NA	NA	-490	0	intron_retention	FALSE	canonical	1	2	junction_1	13.1974557967122	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCAGGCTCCAGAGCTC	NA	False	NA	16	True	AATAAA	-16	NA	56061761	56071398	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_56061900_56062465_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
ES_00018413	chr14	+	3454	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	56	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	115.170043365837	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640093	56726892	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ES_00018414	chr14	+	3434	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	112.921056187744	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640153	56726892	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ES_00018417	chr14	+	210	2	Antisense	novelGene_ENSMUSG00000021938.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	779	junction_1	0	85	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	57007136	57010112	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_57007188_57009953
ES_00018418	chr14	+	209	1	Intergenic	novelGene_1286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57009902	57010111	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_57009900_57010100
ES_00018419	chr14	+	1386	1	FSM	ENSMUSG00000100017.3	ENSMUST00000186474.3	1911	1	3	522	3	-522	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGCTGACCCAGGATACA	NA	False	NA	NA	False	ATTAAA	-25	NA	57049448	57050834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_57049400_57050800
ES_00018420	chr14	+	1803	1	FSM	ENSMUSG00000114500.2	ENSMUST00000224747.2	943	1	-370	-490	-370	490	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTAGGAACCTTGTTCCA	NA	False	NA	NA	False	NA	NA	NA	57102499	57104302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_57102500_57104300
ES_00018421	chr14	+	6740	25	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	0	-308	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_11	40.6758015696474	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACTCAAATTGTAACTC	NA	False	NA	24	True	CATAAA	-7	NA	57124109	57199850	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165799_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
ES_00018422	chr14	+	511	3	FSM	ENSMUSG00000021963.18	ENSMUST00000143600.2	521	3	10	0	10	0	multi-exon	FALSE	canonical	3	2870	junction_1	123.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGACTTTGCCATTAAGC	NA	False	NA	NA	False	AATAAA	-21	NA	58035892	58039604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_58036055_58038950_58039074_58039378
ES_00018423	chr14	+	200	1	Intergenic	novelGene_1291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGAACCAGTGCCAC	NA	False	NA	NA	False	NA	NA	NA	58132280	58132480	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_58132300_58132500
ES_00018424	chr14	+	213	1	Intergenic	novelGene_1292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAACAAAACCCAGGT	NA	False	NA	NA	False	NA	NA	NA	58157627	58157840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_58157600_58157800
ES_00018425	chr14	+	3311	13	NNC	ENSMUSG00000035469.18	novel	3957	13	NA	NA	-151	35265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	110.578654761617	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATGGATGGTCACTGAGG	NA	False	NA	NA	False	AAAACA	-8	NA	59438506	59509979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_59439034_59447376_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667_59473850_59509873
ES_00018426	chr14	+	3346	14	NNC	ENSMUSG00000035469.18	novel	3957	13	NA	NA	-151	79359	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	115.482625041131	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCATGTGTGTTGACAA	NA	False	NA	NA	False	AAAACA	-40	NA	59438506	59554073	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667_59473850_59509873_59509958_59554019
ES_00018428	chr14	+	5841	12	NIC	ENSMUSG00000021990.17	novel	1208	7	NA	NA	-17	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	3.46648653907957	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTAGTGATGCATCTCC	NA	False	NA	9	True	ATTAAA	-17	NA	60940384	61002003	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_60940572_60944162_60944499_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ES_00018429	chr14	+	730	1	FSM	ENSMUSG00000043157.9	ENSMUST00000224727.2	2095	1	805	560	805	-560	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGGGGCCAGTTGAACCT	NA	False	NA	NA	False	NA	NA	NA	61548087	61548817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_61548100_61548800
ES_00018430	chr14	+	864	1	FSM	ENSMUSG00000114902.2	ENSMUST00000225750.2	864	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGATGTGCCGGAACAAT	NA	False	NA	NA	False	NA	NA	NA	61796246	61797110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_61796200_61797100
ES_00018431	chr14	+	447	1	FSM	ENSMUSG00000114440.2	ENSMUST00000223767.2	800	1	363	-10	363	10	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTTTTCTGTACATAAA	1431	False	NA	NA	False	AAAAAG	-43	NA	63056654	63057101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_63056700_63057100
ES_00018432	chr14	+	1986	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-26	25475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCACTACCATACCTGGCC	NA	False	NA	NA	False	NA	NA	NA	63359936	63408847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63380604_63408809
ES_00018435	chr14	+	1133	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	21233	5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.2917211161425	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTACATCATTATTTCT	7449	False	NA	NA	False	AATAAA	-40	NA	65863948	65885898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_65864004_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
ES_00018436	chr14	+	1100	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	25141	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.89121179284	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATATAAAATGAAACTGCT	NA	False	NA	NA	False	AATAAA	-26	NA	65867856	65885884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_65867893_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
ES_00018438	chr14	+	3086	14	NNC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	-43	5346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	59.7479914742504	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTGATTGCTTTTCCCA	NA	False	NA	NA	False	NA	NA	NA	69792829	69828315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812849_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218_69822382_69828273
ES_00018440	chr14	+	503	2	FSM	ENSMUSG00000090216.2	ENSMUST00000160445.2	503	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGAGTGTATAGTTT	NA	False	NA	NA	False	AATGAA	-17	NA	72827191	72840807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_72827269_72840381
ES_00018441	chr14	+	3303	14	FSM	ENSMUSG00000022106.15	ENSMUST00000169479.8	3351	14	48	0	48	0	multi-exon	FALSE	canonical	3	22	junction_8	7.10529430077261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAAACTGCCTTCTTAA	3924	False	NA	NA	False	AATAAA	-10	NA	73388972	73421487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ES_00018442	chr14	+	4970	1	FSM	ENSMUSG00000033446.8	ENSMUST00000044405.8	5400	1	91	339	91	-339	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCAGCAGTATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	73475425	73480395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_73475400_73480400
ES_00018443	chr14	+	1734	1	NIC	ENSMUSG00000115289.2	novel	1244	2	NA	NA	44608	236	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGTTGGTTTTAATTGT	NA	False	NA	NA	False	NA	NA	NA	74191332	74193066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_74191300_74193100
ES_00018444	chr14	+	1033	1	FSM	ENSMUSG00000115411.2	ENSMUST00000228329.2	1231	1	311	-113	311	113	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTTTAACTCCAATAACAA	NA	False	NA	NA	False	AATATA	-24	NA	74535295	74536328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_74535300_74536300
ES_00018445	chr14	+	783	4	FSM	ENSMUSG00000021996.17	ENSMUST00000176484.2	759	4	-24	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	597.402339764045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAAAATGAGCATTTC	NA	False	NA	NA	False	AATAAA	-10	NA	74969736	74976895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74976368
ES_00018446	chr14	+	701	4	FSM	ENSMUSG00000021999.10	ENSMUST00000227817.2	853	4	152	0	152	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGAAAATGGCCCCCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	75509940	75520986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_75510035_75512381_75512585_75515569_75515658_75520670
ES_00018447	chr14	+	569	2	Antisense	novelGene_ENSMUSG00000115615.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACCCAGTGAGCATGCG	NA	False	NA	NA	False	AATAAA	-20	NA	75609303	75616289	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_+_75609485_75615901
ES_00018448	chr14	+	2229	4	FSM	ENSMUSG00000065147.3_ENSMUSG00000060126.15	ENSMUST00000154533.8	762	4	-245	-1222	17	13	multi-exon	FALSE	canonical	3	5160	junction_2	155.938021876214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTGATTGTGCTGACC	855	False	NA	17	True	AATAAA	-28	NA	76082549	76085750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133
ES_00018449	chr14	+	2529	3	FSM	ENSMUSG00000065147.3_ENSMUSG00000060126.15	ENSMUST00000150047.8	890	3	-221	-1418	17	13	multi-exon	FALSE	canonical	3	5160	junction_2	140	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTGATTGTGCTGACC	855	False	NA	17	True	AATAAA	-28	NA	76082549	76085750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76082897_76083056_76083131_76083642
ES_00018451	chr14	+	3733	2	FSM	ENSMUSG00000115092.2	ENSMUST00000227784.2	3733	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAACACGCCACCCTCC	NA	False	NA	6	True	AATAAA	-22	NA	76764055	76768186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_+_76764413_76764810
ES_00018458	chr14	+	858	3	ISM	ENSMUSG00000022022.4	ENSMUST00000227610.2	2008	10	-215	17995	-1	-17995	5prime_fragment	FALSE	canonical	3	90	junction_2	9.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTTGTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	79635210	79639345	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_+_79635477_79637131_79637240_79638861
ES_00018468	chr14	+	2760	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	11508	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.2427536216917	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121503827	121521156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_+_121503920_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ES_00018471	chr14	+	2361	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	27.256245019481	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771754	123127240	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ES_00018472	chr14	-	564	1	FSM	ENSMUSG00000035129.7	ENSMUST00000038304.7	1242	1	101	577	101	-577	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAACAGGAAGGAAGTAAGT	NA	False	NA	NA	False	AAAACA	-27	NA	3938232	3937668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_3937700_3938200
ES_00018473	chr14	-	304	1	FSM	ENSMUSG00000017485.12	ENSMUST00000224695.2	837	1	158	375	56	-375	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTGGATATTTTAATTAT	NA	False	NA	NA	False	ACTAAA	-33	NA	6046419	6046115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6046100_6046400
ES_00018474	chr14	-	1695	1	FSM	ENSMUSG00000114907.2	ENSMUST00000225889.2	1741	1	41	5	41	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACTTCTGTTTGTAATA	NA	False	NA	NA	False	AATAAA	-17	NA	6226371	6224676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_6224700_6226400
ES_00018475	chr14	-	671	5	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	379	-3	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	12.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACTTCCTGTGCTGCT	NA	False	NA	-5	True	AATAAA	-13	NA	8119763	8114275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8119495
ES_00018476	chr14	-	8220	27	Antisense	novelGene_ENSMUSG00000114246.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	50	junction_26	12.5460099977605	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATAGTATTGGGCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	10517058	10227722	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877
ES_00018477	chr14	-	8307	28	Antisense	novelGene_ENSMUSG00000114246.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_16	18.893318289663	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATAGTATTGGGCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	10517058	10227722	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10290412_10290500_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877
ES_00018478	chr14	-	903	2	Intergenic	novelGene_1203	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	56	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGCTGTGTTGGTTAG	NA	False	NA	NA	False	NA	NA	NA	10916235	10748550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_10748659_10915440
ES_00018479	chr14	-	882	1	FSM	ENSMUSG00000114533.2	ENSMUST00000224382.2	1279	1	874	-477	874	477	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	14059982	14059100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14059100_14060000
ES_00018480	chr14	-	442	1	FSM	ENSMUSG00000114533.2	ENSMUST00000224382.2	1279	1	282	555	282	-555	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAACTGCCATGTTTATC	NA	False	NA	NA	False	NA	NA	NA	14060574	14060132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14060100_14060600
ES_00018481	chr14	-	2121	6	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	52554	4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	247.863349448845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCATTCTTGGAGTGG	NA	False	NA	NA	False	AATAAA	-21	NA	14532478	14518180	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14532378
ES_00018482	chr14	-	720	1	FSM	ENSMUSG00000096579.2	ENSMUST00000170414.2	847	1	58	69	58	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGCTACTGCTTCATTG	NA	False	NA	NA	False	AAGAAA	-36	NA	14904456	14903736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_14903700_14904500
ES_00018483	chr14	-	945	5	FSM	ENSMUSG00000091700.8	ENSMUST00000169465.8	984	5	53	-14	-5	0	multi-exon	FALSE	canonical	0	0	junction_1	8.92678553567856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	17760482	17752094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_17752421_17757500_17757685_17758360_17758493_17759447_17759611_17760342
ES_00018484	chr14	-	1063	1	Genic_Genomic	ENSMUSG00000091563.9	novel	NA	NA	NA	NA	21200	4	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTATGCTTCTGCGTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	18338047	18336984	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_18337000_18338000
ES_00018485	chr14	-	911	6	NNC	ENSMUSG00000096775.2	novel	1817	6	NA	NA	-5237	-1041	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10.2293694820355	261	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGCCTCTCATCCCTA	NA	False	NA	NA	False	AATACA	-3	NA	18451069	18429443	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_18429550_18433049_18433233_18433907_18434040_18434989_18435153_18435884_18435995_18450852
ES_00018487	chr14	-	1645	5	ISM	ENSMUSG00000096793.8	ENSMUST00000170480.8	1955	7	14731	0	14731	0	3prime_fragment	FALSE	canonical	0	0	junction_1	2.1650635094611	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	18644968	18639087	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_18640231_18642105_18642289_18642964_18643097_18644049_18644213_18644944
ES_00018488	chr14	-	1756	6	NIC	ENSMUSG00000095195.8	novel	1955	7	NA	NA	68	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.83303027798234	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTATGCTTCTGCGTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	18897682	18875548	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_18896174_18896289_18897665
ES_00018489	chr14	-	902	5	FSM	ENSMUSG00000095533.8	ENSMUST00000112728.9	984	5	0	82	0	-82	multi-exon	FALSE	canonical	0	0	junction_1	10.3923048454133	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGAACACATTAATGGCA	NA	False	NA	NA	False	NA	NA	NA	19074680	19066329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_19066560_19071646_19071831_19072506_19072639_19073593_19073757_19074487
ES_00018490	chr14	-	2415	8	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-305	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.38505138783324	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTATGCTTCTGCGTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	19137451	19114969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19132241_19132393_19135569_19135684_19137061
ES_00018491	chr14	-	890	5	FSM	ENSMUSG00000079409.9	ENSMUST00000100920.10	984	5	0	94	0	-94	multi-exon	FALSE	canonical	0	0	junction_1	11.6913429510899	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGATGATGATGTTGCAC	NA	False	NA	NA	False	NA	NA	NA	19281518	19273199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_19273418_19278483_19278668_19279344_19279477_19280431_19280595_19281325
ES_00018492	chr14	-	1755	5	FSM	ENSMUSG00000071613.12	ENSMUST00000170790.8	1755	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.27760839478607	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19335776	19328163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_19329306_19332805_19332989_19333664_19333797_19334746_19334910_19335641
ES_00018494	chr14	-	749	4	NNC	ENSMUSG00000021811.8	novel	1164	3	NA	NA	0	198	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	444.381467760402	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCCGGTTTCCATGTAA	NA	False	NA	NA	False	NA	NA	NA	20438944	20437331	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_20437412_20438024_20438280_20438367_20438509_20438671
ES_00018497	chr14	-	4066	13	NIC	ENSMUSG00000021816.12	novel	3298	14	NA	NA	0	389	combination_of_known_splicesites	FALSE	canonical	2	6	junction_11	69.1172011875481	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATAGGTAGCTGGGCG	NA	False	NA	NA	False	NA	NA	NA	20596615	20549042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581727_20581929_20596423
ES_00018499	chr14	-	1569	3	FSM	ENSMUSG00000097577.3	ENSMUST00000180987.2	1554	3	0	-15	0	15	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCATTTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	20753080	20737288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20738682_20738832_20738908_20752979
ES_00018501	chr14	-	1157	6	FSM	ENSMUSG00000039308.7	ENSMUST00000224829.2	1147	6	0	-10	0	0	multi-exon	FALSE	canonical	2	13	junction_2	22.0671701855947	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTTTCTGTTTTGTCTG	NA	False	NA	-10	True	AATAAA	-6	NA	20775654	20773806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20774429_20774528_20774632_20774815_20774889_20774975_20775147_20775346_20775522_20775641
ES_00018503	chr14	-	254	1	FSM	ENSMUSG00000114728.2	ENSMUST00000225216.2	408	1	26	128	26	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGCAAGTGAGGCCTAC	NA	False	NA	NA	False	AAAACA	-38	NA	20906463	20906209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_20906200_20906500
ES_00018504	chr14	-	229	1	Intergenic	novelGene_1213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCGTTTCTTTGCATAT	NA	False	NA	NA	False	NA	NA	NA	20941541	20941312	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_20941300_20941500
ES_00018507	chr14	-	418	2	FSM	ENSMUSG00000072676.13	ENSMUST00000184129.2	418	2	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCCTCCTTTCAGTGG	NA	False	NA	NA	False	ATTAAA	-30	NA	25926212	25925180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_25925332_25925945
ES_00018508	chr14	-	390	1	Intergenic	novelGene_1224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAAGCACTCACCCTGCA	NA	False	NA	NA	False	NA	NA	NA	26013789	26013399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_26013400_26013800
ES_00018509	chr14	-	5503	25	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	61.4828340993556	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGAGTTGTACATCATT	NA	False	NA	1	True	AATAAA	-23	NA	26256050	26134322	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26174692_26174756_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ES_00018510	chr14	-	5389	23	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_12	61.0146304091645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTGAGTTGTACATCA	NA	False	NA	-1	True	AATAAA	-21	NA	26256040	26134324	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26174692_26174756_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ES_00018511	chr14	-	6843	21	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_18	68.3302824522188	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGTATGAAATATTT	NA	False	NA	-12	True	AATAAA	-20	NA	26692462	26640944	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26685603_26685664_26686815_26686915_26692357
ES_00018512	chr14	-	968	1	FSM	ENSMUSG00000114482.2	ENSMUST00000225617.2	968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAGTACAGCAGATGAG	NA	False	NA	NA	False	NA	NA	NA	27274115	27273147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_27273100_27274100
ES_00018513	chr14	-	1360	5	FSM	ENSMUSG00000042354.8	ENSMUST00000228427.2	1360	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	348.72222111589	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCGCTGGAGGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	30739113	30736061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30736984_30737231_30737342_30738278_30738412_30738769_30738865_30739013
ES_00018514	chr14	-	1373	9	FSM	ENSMUSG00000021902.8	ENSMUST00000228437.2	1373	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	12.4599357943771	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCGTGCCAACAGTGGAA	NA	False	NA	NA	False	GGGGCT	-29	NA	30972965	30959768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_30960111_30960293_30960440_30961076_30961194_30961587_30961695_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
ES_00018515	chr14	-	2705	9	FSM	ENSMUSG00000021892.15	ENSMUST00000091903.5	2684	9	-20	-1	-7	1	multi-exon	FALSE	canonical	1	5	junction_3	1.69096865730859	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAAGTCCACTGTTGTC	5888	False	NA	NA	False	AATAAA	-27	NA	31158042	31095740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_31097159_31097560_31097822_31099347_31099568_31100234_31100278_31101345_31101477_31109675_31109841_31133497_31133627_31156039_31156103_31157767
ES_00018517	chr14	-	212	2	Antisense	novelGene_ENSMUSG00000021906.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	243	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGTAGGACAGTATTAA	NA	False	NA	NA	False	NA	NA	NA	31832406	31810292	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_31810459_31832360
ES_00018519	chr14	-	4248	1	Genic_Genomic	ENSMUSG00000115691.2	novel	NA	NA	NA	NA	12237	2161	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGTCTTATTTCTTATT	NA	False	NA	0	True	ATTAAA	-23	NA	32027705	32023457	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_32023500_32027700
ES_00018520	chr14	-	414	2	FSM	ENSMUSG00000071531.4	ENSMUST00000226511.2	438	2	24	0	4	0	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCGGCGTTCAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	33923586	33917372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_33917775_33923574
ES_00018521	chr14	-	3607	1	FSM	ENSMUSG00000115124.2	ENSMUST00000227403.2	1110	1	-2501	4	-2501	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACATGGTGGTGCATGCC	NA	False	NA	NA	False	AATAAA	-10	NA	33956186	33952579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_33952600_33956200
ES_00018522	chr14	-	480	4	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	27	-4	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	1190.11941511019	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTCCTGAGTTTACCTC	NA	False	NA	-10	True	AATAAA	-17	NA	34077363	34073841	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_34074035_34075654_34075718_34076131_34076235_34077242
ES_00018523	chr14	-	386	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	-6867	-4	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	1267.5	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTCCTGAGTTTACCTC	NA	False	NA	-10	True	AATAAA	-17	NA	34084257	34073841	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_34074035_34075654_34075718_34084127
ES_00018524	chr14	-	1926	1	FSM	ENSMUSG00000115109.2	ENSMUST00000228194.2	1100	1	-843	17	-843	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTCTTACCTTGAATAT	9834	False	NA	NA	False	AATAAA	-19	NA	34492855	34490929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_34490900_34492900
ES_00018526	chr14	-	229	1	NIC	ENSMUSG00000115294.2	novel	568	3	NA	NA	21170	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCCTATTCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	44429524	44429295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_44429300_44429500
ES_00018532	chr14	-	471	1	FSM	ENSMUSG00000084276.2	ENSMUST00000121261.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	46096003	46095532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_46095500_46096000
ES_00018534	chr14	-	879	1	FSM	ENSMUSG00000114977.2	ENSMUST00000227190.2	1035	1	137	19	137	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAATTTGAGGTAACCTA	NA	False	NA	NA	False	NA	NA	NA	47535862	47534983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47535000_47535900
ES_00018535	chr14	-	727	4	FSM	ENSMUSG00000037544.15	ENSMUST00000177822.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	192.977258303206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAACATTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	47631710	47625244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593
ES_00018537	chr14	-	509	5	FSM	ENSMUSG00000006288.9	ENSMUST00000227327.2	509	5	0	0	0	0	multi-exon	FALSE	canonical	3	788	junction_4	12.8452325786651	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCCAGCTCATCTGGGCC	NA	False	NA	NA	False	NA	NA	NA	51014887	51009743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718
ES_00018538	chr14	-	877	2	FSM	ENSMUSG00000047894.3	ENSMUST00000228835.2	896	2	19	0	19	0	multi-exon	FALSE	canonical	1	1	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAGTCAGTCTGGAAGA	NA	False	NA	NA	False	AATAAA	-17	NA	51436586	51432780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_51433399_51436327
ES_00018539	chr14	-	232	2	Intergenic	novelGene_1267	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAGACAAACTT	NA	False	NA	NA	False	NA	NA	NA	52122271	52103205	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_52103413_52122246
ES_00018540	chr14	-	1004	12	FSM	ENSMUSG00000004558.16	ENSMUST00000227237.2	1060	12	56	0	-5	0	multi-exon	FALSE	canonical	3	23	junction_11	37.4112724427428	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGCGGGCCTCCTAAGCC	9368	False	NA	NA	False	NA	NA	NA	52151559	52144405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52151380
ES_00018542	chr14	-	2596	8	NIC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1238.64623270566	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8761	False	NA	-38	True	AATAAA	-19	NA	52341449	52311001	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ES_00018543	chr14	-	1301	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8763	False	NA	42	True	AATAAA	-18	NA	52341447	52312255	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ES_00018545	chr14	-	8533	38	NIC	ENSMUSG00000053754.15	novel	8509	38	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_15	12.4723214376991	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTCTTCCTATGTTCTG	431	False	NA	-9	True	AATAAA	-17	NA	52495237	52435607	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450201_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
ES_00018547	chr14	-	1936	4	FSM	ENSMUSG00000053754.15	ENSMUST00000134329.2	2444	4	498	10	122	-10	multi-exon	FALSE	canonical	3	42	junction_2	6.54896090146283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGACTCTCAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52444515	52441191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52441637_52441889_52442964_52443052_52443262_52444307
ES_00018550	chr14	-	282	1	Intergenic	novelGene_1271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTGGATTTTCAAGAC	NA	False	NA	NA	False	NA	NA	NA	52507602	52507320	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_52507300_52507600
ES_00018551	chr14	-	963	3	FSM	ENSMUSG00000022160.19	ENSMUST00000127797.9	963	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	87	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTCACCAGCCCCCTTC	NA	False	NA	NA	False	NA	NA	NA	52537233	52534445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_52535116_52535325_52535543_52537157
ES_00018553	chr14	-	278	2	Antisense	novelGene_ENSMUSG00000105667.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	405	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTACCCGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	54580686	54551658	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr14_-_54551720_54580469
ES_00018555	chr14	-	2569	12	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_11	59.9011582553341	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655237	54606898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54654045_54654228_54654833
ES_00018556	chr14	-	3365	11	ISM	ENSMUSG00000000958.11	ENSMUST00000197440.5	2278	12	-199	-2	-118	0	intron_retention	FALSE	canonical	3	20	junction_9	46.7208732795097	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655355	54606898	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045
ES_00018557	chr14	-	2589	18	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	0	23012	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	188.341330428042	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAGAAAAAGA	4827	False	NA	NA	False	NA	NA	NA	54754850	54721631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54721660_54744641_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ES_00018558	chr14	-	2578	18	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	0	23012	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	188.341330428042	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAGAAAAAGA	4827	False	NA	NA	False	NA	NA	NA	54754850	54721631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_54721660_54744652_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ES_00018561	chr14	-	3382	12	FSM	ENSMUSG00000059674.8	ENSMUST00000067784.8	3489	12	3	104	3	-104	multi-exon	FALSE	canonical	0	0	junction_4	0.953462589245592	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTGGGGGGGTGGGGGGG	NA	False	NA	-109	True	NA	NA	NA	54878818	54868791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_54870070_54870503_54870753_54870915_54871028_54871106_54871229_54873789_54873927_54874777_54875032_54875460_54875649_54875783_54875952_54876024_54876145_54876327_54876623_54876800_54877119_54878677
ES_00018562	chr14	-	2523	13	NIC	ENSMUSG00000022185.20	novel	2494	13	NA	NA	1	0	intron_retention	FALSE	canonical	3	25	junction_12	135.990706381805	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3773	False	NA	0	True	AATAAA	-25	NA	54891123	54879617	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890775_54890991
ES_00018565	chr14	-	767	3	FSM	ENSMUSG00000022199.13	ENSMUST00000226456.2	767	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTCTCACGGGGATTG	NA	False	NA	NA	False	NA	NA	NA	55146451	55145392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55145561_55145717_55145824_55145958
ES_00018567	chr14	-	296	2	FSM	ENSMUSG00000022208.13	ENSMUST00000132992.2	659	2	363	0	363	0	multi-exon	FALSE	canonical	1	1	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGAACTGGGGCCCCTTC	NA	False	NA	NA	False	NA	NA	NA	55347652	55347098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_55347276_55347533
ES_00018568	chr14	-	2306	5	NNC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	136.560426185627	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5213	False	NA	51	True	AATAAA	-19	NA	55880790	55873421	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_55874070_55875479_55875590_55877841_55878028_55878423_55879046_55880050
ES_00018573	chr14	-	1207	11	ISM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	2332	-17	202	-3	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGCTGCCCTGACAACA	NA	False	NA	-2	True	AATAAA	-36	NA	55957388	55953764	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
ES_00018576	chr14	-	879	5	FSM	ENSMUSG00000040314.3	ENSMUST00000015583.2	1002	5	123	0	123	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGAACTCCTATGTC	NA	False	NA	NA	False	ATTAAA	-22	NA	56339908	56337337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_56337608_56337999_56338255_56338430_56338567_56339053_56339202_56339838
ES_00018577	chr14	-	1972	2	FSM	ENSMUSG00000097743.2	ENSMUST00000180752.2	1972	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATTTGGATCATTTTCT	NA	False	NA	-3	True	AATAAA	-15	NA	56936818	56933736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_56935496_56936605
ES_00018578	chr14	-	209	1	Intergenic	novelGene_1287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGATATATTAAATGATTT	NA	False	NA	NA	False	NA	NA	NA	57077972	57077763	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_57077800_57078000
ES_00018579	chr14	-	246	2	Intergenic	novelGene_1288	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGAAGGAAGTCCGGGAT	NA	False	NA	NA	False	NA	NA	NA	57804695	57774058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_57774093_57804483
ES_00018581	chr14	-	873	6	NNC	ENSMUSG00000021951.8	novel	836	5	NA	NA	0	12995	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.6075047853864	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGAAGGAAGTCCGGGAT	NA	False	NA	NA	False	NA	NA	NA	57809026	57774058	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_57774096_57787054_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ES_00018585	chr14	-	3619	4	ISM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	47988	0	1755	0	3prime_fragment	FALSE	canonical	3	17	junction_1	2.86744175568088	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTTCATTTGTGGTGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	57935592	57927118	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372
ES_00018587	chr14	-	1392	12	Fusion	ENSMUSG00000068245.15_ENSMUSG00000044703.6	novel	1130	10	NA	NA	-5065	-50	multi-exon	FALSE	canonical	0	0	junction_1	160.944012646049	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAGATTGCCAATATTT	NA	False	NA	NA	False	NA	NA	NA	59607984	59514411	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_59514682_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593476_59593600_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ES_00018588	chr14	-	3424	23	Fusion	ENSMUSG00000091144.3_ENSMUSG00000071350.13	novel	2995	14	NA	NA	7	-627	multi-exon	FALSE	canonical	2	9	junction_9	48.8120023175441	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAAGGCAAAGGCTGA	NA	False	NA	NA	False	AGTAAA	-12	NA	59678315	59618908	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_59618934_59620759_59620832_59622232_59622365_59622915_59622980_59623729_59623798_59624795_59624846_59626717_59626849_59628314_59628423_59630478_59630601_59639782_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
ES_00018589	chr14	-	2600	12	NIC	ENSMUSG00000071350.13	novel	2995	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	43.7604296895217	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59678333	59639457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59668591_59668718_59678035
ES_00018590	chr14	-	3144	10	NNC	ENSMUSG00000021982.15	novel	1892	10	NA	NA	0	0	intron_retention	FALSE	canonical	2	6	junction_5	42.9343455137185	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCTTCATAGTGTATA	NA	False	NA	NA	False	AATAAA	-29	NA	59835384	59805177	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59822250_59822603_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ES_00018592	chr14	-	1127	1	FSM	ENSMUSG00000097589.10	ENSMUST00000191650.2	1557	1	-440	870	-440	408	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTTGAGGGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	61857640	61856513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61856500_61857600
ES_00018593	chr14	-	6849	1	FSM	ENSMUSG00000097589.10	ENSMUST00000193208.2	4098	1	0	-2751	0	139	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTGTGATTGGAAGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	61869341	61862492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61862500_61869300
ES_00018594	chr14	-	229	1	FSM	ENSMUSG00000103869.2	ENSMUST00000195332.2	2912	1	2712	-29	2712	29	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACATGTAAAATGAAGT	NA	False	NA	NA	False	AATATA	-11	NA	61904868	61904639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_61904600_61904900
ES_00018595	chr14	-	5057	12	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	307	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.4110371814905	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTATGGAATCTGGTTTT	NA	False	NA	-9	True	AATAAA	-18	NA	63781124	63757099	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_63759063_63760046_63761029_63761076_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
ES_00018596	chr14	-	6989	10	NNC	ENSMUSG00000021972.15	novel	3396	11	NA	NA	0	2	intron_retention	FALSE	canonical	3	10	junction_2	12.9966757383153	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTCCGGGATTTCTTT	7685	False	NA	NA	False	AATAAA	-16	NA	65187299	65049046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_65054586_65063049_65063139_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
ES_00018597	chr14	-	3398	11	NNC	ENSMUSG00000021972.15	novel	3396	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	12.983065893694	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTCCGGGATTTCTTT	7679	False	NA	NA	False	AATAAA	-16	NA	65187305	65049046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_65050869_65054465_65054586_65063049_65063139_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
ES_00018598	chr14	-	3048	10	FSM	ENSMUSG00000021972.15	ENSMUST00000067843.10	2931	10	-31	-86	-7	86	multi-exon	FALSE	canonical	3	4	junction_1	17.1276975887408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGAAAATTACATCTGCT	7657	False	NA	NA	False	NA	NA	NA	65187327	65059580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_65061148_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
ES_00018599	chr14	-	3455	6	FSM	ENSMUSG00000034463.5	ENSMUST00000042046.5	3597	6	142	0	142	0	multi-exon	TRUE	canonical	0	0	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATGTGTCTTCTAGTGTT	8677	False	NA	NA	False	AGTAAA	-16	NA	66191242	66156842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_66158638_66168246_66169291_66170552_66170652_66173811_66173932_66175659_66175759_66190944
ES_00018600	chr14	-	1487	7	FSM	ENSMUSG00000059456.14	ENSMUST00000136216.8	3478	7	2001	-10	2001	0	multi-exon	FALSE	canonical	2	11	junction_2	1.34370962471642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGACTGTGTCGGTTATT	NA	False	NA	1	True	ATTAAA	-26	NA	66396126	66390705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979
ES_00018601	chr14	-	3302	25	ISM	ENSMUSG00000059456.14	ENSMUST00000178730.8	3863	30	34817	-1	-8453	0	3prime_fragment	FALSE	canonical	2	4	junction_23	3.66832348930983	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGACTGTGTCGGTTATT	NA	False	NA	1	True	ATTAAA	-26	NA	66416184	66390705	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040
ES_00018602	chr14	-	7064	4	Fusion	ENSMUSG00000048922.19_ENSMUSG00000093726.2	novel	676	5	NA	NA	1096	74706	intron_retention	FALSE	non_canonical	0	0	junction_1	247.958777936083	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGGGACTACCAGGCAA	662	False	NA	NA	False	NA	NA	NA	67933087	67835919	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_67835959_67910628_67915472_67917610_67917780_67931074
ES_00018604	chr14	-	2244	2	NNC	ENSMUSG00000048922.19	novel	647	4	NA	NA	1625	1769	intron_retention	FALSE	canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAGTGCAAACTTTATAG	1191	False	NA	NA	False	AATAAA	-21	NA	67932558	67929812	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_67930573_67931074
ES_00018605	chr14	-	10148	53	NNC	ENSMUSG00000044447.6	novel	9988	52	NA	NA	0	206	at_least_one_novel_splicesite	TRUE	non_canonical	1	4	junction_1	14.8755687077402	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGCTCTGCCCATCTA	NA	False	NA	NA	False	AATAAA	-20	NA	68170891	67989377	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_67992672_67992727_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
ES_00018606	chr14	-	1873	10	NNC	ENSMUSG00000022091.7	novel	3061	21	NA	NA	12677	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	7.37027731190089	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCTGCTTCATTA	-3	True	NA	NA	False	AATAAA	-16	NA	70429395	70417916	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429287
ES_00018607	chr14	-	4891	10	FSM	ENSMUSG00000022094.16	ENSMUST00000068044.14	4926	10	37	-2	6	2	multi-exon	TRUE	canonical	2	7	junction_9	2.18298696715428	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGAGTCCCAAGTGTCG	NA	False	NA	2	True	AATAAA	-15	NA	70588837	70540915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70551049_70551220_70553886_70554074_70556110_70556390_70568717_70568816_70588728
ES_00018608	chr14	-	3684	20	FSM	ENSMUSG00000022098.11	ENSMUST00000022693.9	3684	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.84885979686845	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTGTGCCAGATGCTGT	8993	False	NA	NA	False	AATAAA	-20	NA	70757628	70711997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_70712690_70715292_70715544_70716984_70717199_70717593_70717722_70723586_70723713_70727459_70727641_70727986_70728148_70728790_70728917_70729515_70729712_70729844_70729991_70730218_70730336_70732152_70732256_70742121_70742238_70742771_70742897_70744892_70744999_70745438_70745618_70745895_70746014_70746189_70746355_70749020_70749135_70757308
ES_00018609	chr14	-	4785	29	NNC	ENSMUSG00000022100.15	novel	4472	28	NA	NA	0	80440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.3119772857712	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACCAAAAAACAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	71003990	70811245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_70811281_70901975_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920294_70921092_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
ES_00018610	chr14	-	4019	14	NIC	ENSMUSG00000022099.18	novel	4080	15	NA	NA	-7	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	81.6308620139227	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCCTTGAAACAGACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	70873425	70839624	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_70842295_70842407_70842489_70842736_70842813_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70873259
ES_00018611	chr14	-	2828	15	NIC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	-69	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	59.4984565054474	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864563	70841109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_70842295_70842407_70842489_70842736_70842813_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ES_00018612	chr14	-	2609	15	NIC	ENSMUSG00000022099.18	novel	4080	15	NA	NA	-7	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	70.0381820064992	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70873425	70841109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr14_-_70842295_70842407_70842489_70842736_70842813_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70873259
ES_00018613	chr14	-	595	3	Intergenic	novelGene_1298	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	46	junction_2	43	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTAGCTCCGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	73431976	73424808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_-_73425028_73425702_73425852_73431749
ES_00018614	chr14	-	747	1	FSM	ENSMUSG00000075581.6	ENSMUST00000100510.6	747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTCTTTAAGAGCAACAA	NA	False	NA	NA	False	NA	NA	NA	74034730	74033983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_74034000_74034700
ES_00018615	chr14	-	442	5	FSM	ENSMUSG00000022003.8	ENSMUST00000227894.2	444	5	2	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	18.5522909636519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGCATGATAGACAGCT	NA	False	NA	NA	False	NA	NA	NA	76024445	76007069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76024364
ES_00018616	chr14	-	470	2	FSM	ENSMUSG00000022003.8	ENSMUST00000228379.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTTTCTCCCCTTTGCCG	NA	False	NA	NA	False	NA	NA	NA	76024445	76014177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_76014567_76024364
ES_00018622	chr14	-	2329	3	FSM	ENSMUSG00000022016.18	ENSMUST00000227808.2	3065	3	736	0	736	0	multi-exon	FALSE	canonical	3	52	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	78740675	78732264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr14_-_78733387_78736274_78736436_78739629
ES_00018626	chr14	-	1049	2	Genic_Genomic	ENSMUSG00000062093.6	novel	3220	1	NA	NA	1157	10	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGAGTTCCTGAATATA	NA	False	NA	NA	False	AATAAA	-26	NA	90134745	90133653	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr14_-_90133967_90134009
ES_00018629	chr14	-	1538	7	NNC	ENSMUSG00000072294.6	novel	719	4	NA	NA	83	-40920	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	9.3571125650788	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATCAGTTTGCCTCCAC	NA	False	NA	NA	False	AATAAA	-20	NA	100521837	100178556	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_100179050_100179469_100179533_100224866_100225003_100260057_100260605_100347206_100347297_100387167_100387232_100521692
ES_00018631	chr14	-	1026	4	NNC	ENSMUSG00000075486.11	novel	1090	4	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	201.894912158666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101877882	101871201	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr14_-_101871829_101874389_101874543_101877547_101877736_101877824
ES_00018638	chr14	-	7250	24	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	3633	22	NA	NA	0	0	multi-exon	FALSE	canonical	3	7	junction_17	65.2926522265914	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGTTAATGTTTTAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	105414296	105344186	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_105347239_105350904_105350964_105351555_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388356_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00018639	chr14	-	6322	21	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	4212	21	NA	NA	4	0	multi-exon	FALSE	canonical	3	18	junction_1	48.0837550530322	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGTTAATGTTTTAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	105414696	105344186	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_105347239_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00018640	chr14	-	4921	23	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	3633	22	NA	NA	4	-3	multi-exon	FALSE	canonical	3	18	junction_15	57.6097587004204	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATAAGTTTGGCTTTAAT	NA	False	NA	NA	False	ATTAAA	-7	NA	105414696	105346828	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr14_-_105347239_105350904_105350964_105351555_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387845_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ES_00018647	chr14	+	514	1	Intergenic	novelGene_1189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGGCATGAATCACACT	NA	False	NA	NA	False	NA	NA	NA	3922604	3923118	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_3922600_3923100
ES_00018648	chr14	+	2992	1	Intergenic	novelGene_1193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTCCTCACTGCTGAAC	NA	False	NA	NA	False	NA	NA	NA	4286833	4289825	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_4286800_4289800
ES_00018649	chr14	+	344	1	Intergenic	novelGene_1212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGGGTTTTAAAAAGC	3736	False	NA	NA	False	NA	NA	NA	20352050	20352394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_20352000_20352400
ES_00018650	chr14	+	239	1	Intergenic	novelGene_1219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAACCTGAGTTCTAAT	3210	False	NA	NA	False	NA	NA	NA	25591722	25591961	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_25591700_25592000
ES_00018651	chr14	+	224	1	Intergenic	novelGene_1221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGCTTCTGATAGTAAT	NA	False	NA	NA	False	NA	NA	NA	25792747	25792971	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_25792700_25793000
ES_00018652	chr14	+	214	1	Intergenic	novelGene_1225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTCTCTTTAGCTCTTG	NA	False	NA	NA	False	NA	NA	NA	26049426	26049640	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_26049400_26049600
ES_00018653	chr14	+	4220	1	Intergenic	novelGene_1228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGATATTTTTAAAAAAAG	1343	False	NA	NA	False	NA	NA	NA	26657836	26662056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_26657800_26662100
ES_00018654	chr14	+	209	1	Intergenic	novelGene_1230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAGCTACTGTTTTCCA	NA	False	NA	NA	False	NA	NA	NA	26733151	26733360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_26733200_26733400
ES_00018655	chr14	+	346	1	Intergenic	novelGene_1232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGCCAACACAAAACTTC	6389	False	NA	NA	False	NA	NA	NA	27409730	27410076	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_27409700_27410100
ES_00018657	chr14	+	213	1	Intergenic	novelGene_1242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAAAAACACTAGGTTGT	NA	False	NA	NA	False	NA	NA	NA	36865339	36865552	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_36865300_36865600
ES_00018658	chr14	+	203	1	Intergenic	novelGene_1249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	45074226	45074429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_45074200_45074400
ES_00018659	chr14	+	586	1	Intergenic	novelGene_1255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTCACTTCATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	47414170	47414756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_47414200_47414800
ES_00018660	chr14	+	365	1	Intergenic	novelGene_1257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAATAAATAAATAAACC	NA	False	NA	NA	False	NA	NA	NA	47811515	47811880	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_47811500_47811900
ES_00018661	chr14	+	210	1	Intergenic	novelGene_1261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTTTTTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	49473865	49474075	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_49473900_49474100
ES_00018663	chr14	+	205	1	Intergenic	novelGene_1266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATTTGCCTTTTATCTTC	NA	False	NA	NA	False	NA	NA	NA	51393490	51393695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_51393500_51393700
ES_00018664	chr14	+	287	1	Intergenic	novelGene_1268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTGACCCTACTCACT	NA	False	NA	NA	False	NA	NA	NA	52367395	52367682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_52367400_52367700
ES_00018665	chr14	+	205	1	Intergenic	novelGene_1272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTCTTTATATTTAGA	NA	False	NA	NA	False	NA	NA	NA	52592260	52592465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_52592300_52592500
ES_00018666	chr14	+	201	1	Intergenic	novelGene_1276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCACCCTTTTTTGATT	NA	False	NA	NA	False	NA	NA	NA	55359157	55359358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_55359200_55359400
ES_00018667	chr14	+	236	1	Intergenic	novelGene_1293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1898	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTTTCTATAATTGTG	NA	False	NA	NA	False	NA	NA	NA	59553703	59553939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr14_+_59553700_59553900
ES_00018676	chr15	+	2009	5	FSM	ENSMUSG00000064373.14	ENSMUST00000159216.10	2085	5	76	0	-1	0	multi-exon	FALSE	canonical	2	6	junction_1	1.78535710713571	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTGTGTCTTTATTGT	9353	False	NA	14	True	AATAAA	-19	NA	3300478	3309989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_3300535_3304142_3304359_3305048_3305262_3306638_3306757_3308583
ES_00018677	chr15	+	456	1	FSM	ENSMUSG00000115843.2	ENSMUST00000227989.2	576	1	148	-28	148	28	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAACAAAACAAA	NA	False	NA	NA	False	AATAAA	-25	NA	3959614	3960070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_3959600_3960100
ES_00018678	chr15	+	3475	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	52	0	52	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4055916	4184826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ES_00018679	chr15	+	1271	1	FSM	ENSMUSG00000115205.2	ENSMUST00000228510.2	999	1	-75	-197	-75	197	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAATAGGAATGGATCAA	NA	False	NA	NA	False	AATAAA	-28	NA	4914526	4915797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_4914500_4915800
ES_00018680	chr15	+	488	1	FSM	ENSMUSG00000080720.3	ENSMUST00000121915.3	655	1	49	118	49	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTCGACAGAAACCACACA	5421	False	NA	NA	False	NA	NA	NA	5122077	5122565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5122100_5122600
ES_00018681	chr15	+	1118	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	-192	-1	-143	1	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2105	False	NA	37	True	AATAAA	-18	NA	5145983	5148160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5146905_5147100_5147186_5148048
ES_00018682	chr15	+	548	5	NNC	ENSMUSG00000041841.9	novel	835	4	NA	NA	-143	23831	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8737.23633007028	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACTCCATCCTTTTT	2105	False	NA	NA	False	NA	NA	NA	5145983	5172453	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048_5148158_5172418
ES_00018683	chr15	+	764	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	0	71	0	-71	multi-exon	FALSE	canonical	3	15185	junction_3	3886.71174930972	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTGGTGACAGGTGGAT	2248	False	NA	NA	False	AATAAA	-28	NA	5146126	5148551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
ES_00018684	chr15	+	563	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	-7	0	0	0	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2297	False	NA	34	True	AATAAA	-15	NA	5146175	5148157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
ES_00018686	chr15	+	4655	9	FSM	ENSMUSG00000050697.10	ENSMUST00000051186.9	4655	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTATTTCTTATTTCAT	NA	False	NA	18	True	AATAAA	-27	NA	5173342	5211380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ES_00018687	chr15	+	4518	8	NIC	ENSMUSG00000050697.10	novel	4655	9	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	45.007482371132	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTGTTACACAGTATTT	NA	False	NA	8	True	AATAAA	-17	NA	5173375	5211370	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_5173478_5190083_5190226_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ES_00018688	chr15	+	1668	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	3	0	3	0	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215008	5247817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ES_00018689	chr15	+	3830	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	-23	-1975	12	1975	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTGTTCTGGTTTCA	NA	False	NA	NA	False	ATTAAA	-18	NA	5215017	5249792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ES_00018690	chr15	+	2964	14	FSM	ENSMUSG00000022150.17	ENSMUST00000110663.9	2754	14	-210	0	-32	0	multi-exon	FALSE	canonical	3	5	junction_9	3.86610211480894	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGGTGATCTCTCCC	8082	False	NA	NA	False	AATAAA	-13	NA	6416046	6469109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ES_00018691	chr15	+	4552	15	FSM	ENSMUSG00000022150.17	ENSMUST00000080880.12	4663	15	-134	245	-134	-245	multi-exon	FALSE	canonical	2	3	junction_9	4.17230910471721	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGATATGTGTTTCTTT	7980	False	NA	NA	False	NA	NA	NA	6415944	6469941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6458776_6459431_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ES_00018692	chr15	+	1041	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	-75	-147	-75	147	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTATTCCAGAAAGATTG	NA	False	NA	NA	False	AATAAA	-41	NA	6683328	6684369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_6683300_6684400
ES_00018693	chr15	+	2518	7	FSM	ENSMUSG00000050310.10	ENSMUST00000226201.2	2633	7	-2	117	0	-117	multi-exon	FALSE	canonical	3	76	junction_1	4.31083905212585	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAACATTTTTGGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	6737859	6787979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941
ES_00018695	chr15	+	9334	38	FSM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	-22	0	-18	0	multi-exon	FALSE	canonical	3	15	junction_28	25.9902212323754	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGTGTTGACATT	NA	False	NA	6	True	AATAAA	-21	NA	6737841	6829882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532_6794601_6797534_6797618_6798726_6798815_6799225_6799317_6799408_6799476_6799603_6799685_6801612_6801714_6803289_6803456_6804087_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ES_00018696	chr15	+	4163	20	FSM	ENSMUSG00000054263.13	ENSMUST00000067190.12	4143	20	-20	0	-20	0	multi-exon	FALSE	canonical	3	17	junction_15	6.67529450936089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGGTTATCAAACAGT	NA	False	NA	NA	False	GATAAA	-25	NA	7159019	7221224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7215046_7215215_7216346_7216509_7217555_7217650_7219595_7219675_7220026
ES_00018697	chr15	+	299	2	FSM	ENSMUSG00000054263.13	ENSMUST00000226826.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGACTGGCTGTCATGAG	NA	False	NA	NA	False	NA	NA	NA	7159047	7162134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_7159308_7162095
ES_00018698	chr15	+	2718	16	NIC	ENSMUSG00000054263.13	novel	2844	17	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_15	8.17964954424495	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCGGCACAGGTTATCCC	NA	False	NA	NA	False	NA	NA	NA	7159043	7214827	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7214547
ES_00018699	chr15	+	3916	1	ISM	ENSMUSG00000054263.13	ENSMUST00000171588.2	9655	19	39200	21	39200	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTTACATCTTACCCT	6695	False	NA	NA	False	AATAAA	-4	NA	7223033	7226949	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_7223000_7226900
ES_00018700	chr15	+	277	1	FSM	ENSMUSG00000115497.2	ENSMUST00000228223.2	279	1	2	0	2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGAACGCTTCACGAATT	NA	False	NA	6	True	AGTAAA	-28	NA	7790196	7790473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_7790200_7790500
ES_00018701	chr15	+	586	1	FSM	ENSMUSG00000116090.2	ENSMUST00000229131.2	586	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAAGCTTCCCTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	8004555	8005141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_8004600_8005100
ES_00018702	chr15	+	7853	35	FSM	ENSMUSG00000022142.9	ENSMUST00000163765.3	7832	35	-21	0	-21	0	multi-exon	TRUE	canonical	3	205	junction_4	36.1069753346922	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGGTGTTTGTATACTA	NA	False	NA	NA	False	ATTAAA	-13	NA	8138735	8190731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172451_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
ES_00018703	chr15	+	220	1	Intergenic	novelGene_1331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATTCTTATTTTTAACT	NA	False	NA	NA	False	NA	NA	NA	8155561	8155781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8155600_8155800
ES_00018704	chr15	+	10583	54	NNC	ENSMUSG00000039801.8	novel	10469	53	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_28	13.3099801418978	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198550	8300642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251269_8251434_8251820_8251892_8252554_8252635_8254822_8254901_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ES_00018705	chr15	+	10683	55	NNC	ENSMUSG00000039801.8	novel	10469	53	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	14.2709547995792	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198550	8300642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_8198974_8199078_8199179_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251269_8251434_8251820_8251892_8252554_8252635_8254822_8254901_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ES_00018707	chr15	+	207	2	Intergenic	novelGene_1332	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTCTTCTTCTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	8213385	8264551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8213419_8264377
ES_00018709	chr15	+	3741	13	FSM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	0	394	0	-394	multi-exon	FALSE	canonical	3	112	junction_7	89.5046553724069	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAGTGTCGTTCAGAAA	6	True	NA	NA	False	AGTAAA	-26	NA	9071339	9110585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9098897_9098964_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
ES_00018710	chr15	+	3328	12	NIC	ENSMUSG00000022253.18	novel	4135	13	NA	NA	14	304	combination_of_known_junctions	FALSE	canonical	3	231	junction_7	43.3900243705397	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTTTTCTTATTTC	20	False	NA	0	True	AATAAA	-20	NA	9071353	9110252	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
ES_00018714	chr15	+	8109	18	FSM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	-11	0	-11	0	multi-exon	FALSE	canonical	2	16	junction_6	5.43473386468287	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTGATTATTTATGT	21	False	NA	11	True	AATAAA	-21	NA	9140625	9202569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175210_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
ES_00018715	chr15	+	936	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	13	0	13	0	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	10	False	NA	9	True	AATAAA	-22	NA	9436126	9466124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
ES_00018717	chr15	+	1534	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	-20	0	-20	0	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACTGTCCTGTGTCTTT	41	False	NA	27	True	AATAAA	-32	NA	10486083	10493775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ES_00018718	chr15	+	1574	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTATCCGACTTACTGT	35	False	NA	11	True	AATAAA	-16	NA	10486134	10493759	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ES_00018719	chr15	+	1404	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATCCGACTTACTGTA	35	False	NA	12	True	AATAAA	-17	NA	10486134	10493760	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ES_00018724	chr15	+	2586	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	-13	4	-13	-4	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCCTGGAATCACCAATG	36	False	NA	NA	False	AATAAA	-13	NA	10981828	10996708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
ES_00018726	chr15	+	4871	20	FSM	ENSMUSG00000022201.17	ENSMUST00000122941.8	4850	20	-21	0	-21	0	multi-exon	TRUE	canonical	1	184	junction_8	102.146464828737	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTGTCTATATTATCTG	19	True	NA	NA	False	AATACA	-17	NA	12117895	12185769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
ES_00018727	chr15	+	4612	20	NNC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	0	-242	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	139.4086243492	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTAATGACTTACTTGT	40	False	NA	10	True	AATAAA	-10	NA	12117916	12185527	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150555_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
ES_00018728	chr15	+	318	1	FSM	ENSMUSG00000115017.2	ENSMUST00000228426.2	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCCACCTAGGAGGGTT	1505	False	NA	NA	False	NA	NA	NA	12181232	12181550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12181200_12181600
ES_00018729	chr15	+	6834	16	FSM	ENSMUSG00000039458.16	ENSMUST00000038172.16	6840	16	0	6	0	-6	multi-exon	TRUE	canonical	3	174	junction_5	33.0552399611452	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTACAAAACAAAAAGCTG	20	True	NA	NA	False	AATAAA	-9	NA	12205113	12274576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
ES_00018730	chr15	+	4378	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174418.8	4359	16	-19	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	54.8326747680817	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTATTAGACTGAGTCAG	29	False	NA	NA	False	ATTAAA	-21	NA	12205170	12272205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236207_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
ES_00018731	chr15	+	4503	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174160.3	4489	16	-14	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	70.217629948294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTTGGTGTGCACGGT	48	False	NA	9	True	ATTAAA	-20	NA	12205189	12272326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266697_12266855_12269587
ES_00018735	chr15	+	4519	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTTTGCTACAGAGTAT	53	False	NA	30	True	ATTAAA	-20	NA	12824948	12935377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ES_00018738	chr15	+	571	1	FSM	ENSMUSG00000115633.2	ENSMUST00000226265.2	485	1	-2	-84	-2	84	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAATCGAGCGCACATAA	NA	False	NA	NA	False	ATTAAA	-19	NA	15943514	15944085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_15943500_15944100
ES_00018740	chr15	+	1351	3	FSM	ENSMUSG00000022321.16	ENSMUST00000176409.2	1978	3	627	0	627	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCTAGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	19007692	19014322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_19007747_19010942_19011195_19013277
ES_00018741	chr15	+	209	1	Intergenic	novelGene_1346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAGTTTTTATCTAGAGC	NA	False	NA	NA	False	NA	NA	NA	20042071	20042280	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_20042100_20042300
ES_00018744	chr15	+	8143	41	FSM	ENSMUSG00000022272.18	ENSMUST00000110457.8	8125	41	-18	0	-18	0	multi-exon	FALSE	canonical	3	32	junction_1	332.593497192895	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	19	False	NA	16	True	AATAAA	-17	NA	25622592	25813759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_25623117_25666511_25666611_25701647_25701807_25714114_25714303_25722255_25722391_25723969_25724095_25725157_25725172_25725281_25725367_25726505_25726610_25732055_25732186_25734073_25734193_25736031_25736179_25736486_25736588_25736680_25736748_25737535_25737629_25738042_25738112_25739372_25739456_25742426_25742536_25744261_25744343_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ES_00018748	chr15	+	5883	23	NIC	ENSMUSG00000022272.18	novel	5880	21	NA	NA	170	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	149.870088371328	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	-1	True	NA	16	True	AATAAA	-17	NA	25753234	25813759	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ES_00018749	chr15	+	6217	24	NNC	ENSMUSG00000022272.18	novel	748	4	NA	NA	-2497	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	246.476140250259	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	1108	False	NA	16	True	AATAAA	-17	NA	25756353	25813759	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_25756451_25758827_25759238_25776106_25776229_25776401_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ES_00018752	chr15	+	5998	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	25	False	NA	16	True	AATAAA	-17	NA	25774107	25813759	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ES_00018756	chr15	+	1361	2	FSM	ENSMUSG00000052253.7	ENSMUST00000227093.2	1475	2	114	0	114	0	multi-exon	TRUE	canonical	3	513	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCGTATTTGAGCAGTG	NA	False	NA	15	True	AATAAA	-22	NA	25995235	25997513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_25996336_25997252
ES_00018758	chr15	+	3593	12	FSM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	-95	0	-95	0	multi-exon	FALSE	canonical	3	63	junction_1	12.2109556553338	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTCATGCT	-4	True	NA	23	True	ATTAAA	-19	NA	27466667	27594995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_27467186_27544336_27544554_27553774_27553894_27557249_27557334_27562809_27562981_27564987_27565123_27567600_27567694_27571644_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
ES_00018759	chr15	+	1897	5	FSM	ENSMUSG00000022265.8	ENSMUST00000134004.3	1911	5	14	0	14	0	multi-exon	FALSE	canonical	3	82	junction_1	8.44097150806707	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCAGTGATTGCCTTCAT	-13	True	NA	NA	False	AATAAA	-14	NA	27571546	27594538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
ES_00018760	chr15	+	535	3	FSM	ENSMUSG00000022240.11	ENSMUST00000226797.2	731	3	-293	489	-122	-44	multi-exon	FALSE	canonical	1	3	junction_2	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTCGGAGACAGGAAGC	2	True	NA	NA	False	NA	NA	NA	30172990	30481006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_30173310_30332155_30332293_30480927
ES_00018767	chr15	+	1318	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	-154	0	112	0	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	-10	True	NA	27	True	ATTAAA	-27	NA	31602109	31617681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ES_00018771	chr15	+	7029	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	11	-4134	11	4134	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGCTTGCTGCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	33831604	33838633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_33831600_33838600
ES_00018772	chr15	+	6710	10	FSM	ENSMUSG00000022255.17	ENSMUST00000163333.9	1593	10	-634	-4483	-20	2	multi-exon	FALSE	canonical	3	69	junction_9	216.816757131084	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTTGTGTTTTAT	7	True	NA	3	True	NA	NA	NA	34082819	34145772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436_34134545_34136832_34136974_34140837
ES_00018773	chr15	+	6919	12	FSM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	0	0	0	0	multi-exon	TRUE	canonical	3	477	junction_6	48.3699585751527	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCCTGGCTTGTGTTTT	52	False	NA	1	True	NA	NA	NA	34082864	34145770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
ES_00018775	chr15	+	1881	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	21	0	21	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	11	False	NA	NA	False	ATTAAA	-22	NA	34238194	34284448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ES_00018778	chr15	+	1467	3	FSM	ENSMUSG00000022330.6	ENSMUST00000228152.2	1324	3	-140	-3	-140	2	multi-exon	FALSE	canonical	3	17	junction_2	15.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTTGAGATTCATCTTG	4179	False	NA	15	True	AATAAA	-18	NA	35300305	35303453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_35301102_35302057_35302158_35302882
ES_00018779	chr15	+	7756	39	NNC	ENSMUSG00000037646.11	novel	13757	62	NA	NA	-21	-48997	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_20	11.9311564014052	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTTGGAACATACTTT	28	False	NA	12	True	AATAAA	-13	NA	35371284	35794683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576527_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450
ES_00018781	chr15	+	3726	20	NNC	ENSMUSG00000037646.11	novel	4568	29	NA	NA	-6	-72464	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_19	14.5875900659951	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGTCTTCTGATGTAA	160	False	NA	NA	False	AATAAA	-17	NA	35371705	35570634	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35569975
ES_00018782	chr15	+	502	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	-13	0	-13	0	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	96	False	NA	NA	False	ATTAAA	-12	NA	36174142	36177153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
ES_00018783	chr15	+	609	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	-8	0	-8	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	124	False	NA	NA	False	ATTAAA	-15	NA	36174170	36177156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
ES_00018785	chr15	+	3646	19	FSM	ENSMUSG00000037617.13	ENSMUST00000047348.11	3646	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	18.7185950987016	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCCTGCGTGTCTGTAT	182	False	NA	NA	False	AATAAA	-25	NA	36179513	36235767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_36179729_36181841_36181990_36183802_36183963_36186752_36186879_36190617_36190683_36191271_36191382_36192149_36192256_36195521_36195653_36197883_36197991_36200347_36200508_36210688_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
ES_00018786	chr15	+	2388	9	FSM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACTGTGAGTATGCCTG	72	False	NA	NA	False	AATAAA	-14	NA	36210607	36235756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
ES_00018792	chr15	+	4938	10	FSM	ENSMUSG00000022295.9	ENSMUST00000228475.2	4927	10	-11	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	450.486897084082	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGTGCTAGTCATTTAT	184	False	NA	28	True	AATAAA	-14	NA	38662176	38692687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38679563_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38690904_38691855
ES_00018793	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	184	False	NA	31	True	AATAAA	-17	NA	38662176	38692690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ES_00018799	chr15	+	6477	4	FSM	ENSMUSG00000022300.11	ENSMUST00000226224.2	6477	4	0	0	0	0	multi-exon	FALSE	canonical	3	771	junction_3	35.6401770789964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTGCAGTTGTGTGTT	NA	False	NA	NA	False	AATAAA	-24	NA	38995647	39010248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_39001644_39007017_39007154_39008485_39008650_39010067
ES_00018801	chr15	+	4581	24	FSM	ENSMUSG00000037386.17	ENSMUST00000227381.2	4581	24	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_17	12.1392363269332	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	57	True	TTTAAA	-26	NA	39300392	39545849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39473459_39473538_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ES_00018802	chr15	+	1390	6	NNC	ENSMUSG00000037386.17	novel	4800	27	NA	NA	-12040	-58	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	16.4608626748418	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCATGGACACAGATTAG	NA	False	NA	-1	True	ATTAAA	-10	NA	39510921	39545791	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_39510965_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ES_00018803	chr15	+	3685	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTGTTGAGGGTGCTG	NA	False	NA	4	True	AATAAA	-14	NA	39522961	39547768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ES_00018810	chr15	+	4379	14	FSM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	-35	2	-35	0	multi-exon	FALSE	canonical	3	180	junction_7	35.9990137931977	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGTTTGGATTTTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	41652301	41724441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
ES_00018812	chr15	+	1441	1	FSM	ENSMUSG00000116083.2	ENSMUST00000229137.2	1076	1	18	-383	18	383	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGTTGAG	NA	False	NA	NA	False	NA	NA	NA	41785489	41786930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_41785500_41786900
ES_00018817	chr15	+	558	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ES_00018819	chr15	+	654	6	FSM	ENSMUSG00000022338.9	ENSMUST00000228130.2	654	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	414.684747730128	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9651	False	NA	40	True	AATAAA	-42	NA	44291522	44299290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
ES_00018821	chr15	+	2338	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	-209	-516	-47	27	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGAAGATTTTTTATTT	NA	False	NA	NA	False	AATATA	-24	NA	44482777	44504938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ES_00018829	chr15	+	8488	9	FSM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	59	0	-48	0	multi-exon	FALSE	canonical	3	28	junction_7	6.05702071979286	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGCTGACTTTTTCTC	NA	False	NA	10	True	AATAAA	-21	NA	54975771	55122667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
ES_00018832	chr15	+	590	7	FSM	ENSMUSG00000022369.14	ENSMUST00000169517.2	590	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	69.9088692513332	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAGGAGTTACGCCTA	NA	False	NA	NA	False	NA	NA	NA	55421130	55432473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_55421134_55421896_55421978_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441
ES_00018835	chr15	+	3460	22	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	3	77	junction_18	60.8888806130719	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCAAAGCTGAACTGTCT	NA	False	NA	6	True	AATAAA	-13	NA	57775638	57833455	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
ES_00018836	chr15	+	732	3	ISM	ENSMUSG00000022364.15	ENSMUST00000161329.2	914	6	5209	11	5209	-5	3prime_fragment	FALSE	canonical	3	284	junction_1	37.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	3	True	AATAAA	-10	NA	57827017	57833452	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_57827321_57831304_57831401_57833119
ES_00018837	chr15	+	483	2	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	11022	-2	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCAAAGCTGAACTGTCT	NA	False	NA	6	True	AATAAA	-13	NA	57832830	57833455	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_57832978_57833119
ES_00018840	chr15	+	1394	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2649	False	NA	27	True	AATAAA	-17	NA	58004761	58022050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
ES_00018851	chr15	+	1177	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	-55	0	-17	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCCTCAGCTCAGCA	NA	False	NA	4	True	AATAAA	-5	NA	59246078	59473521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
ES_00018859	chr15	+	872	4	ISM	ENSMUSG00000097039.9	ENSMUST00000182956.8	1342	7	137777	-81	-2412	81	3prime_fragment	FALSE	canonical	2	7	junction_1	9.39266853573691	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTGGGGAAAGGGTTTGC	8323	False	NA	108	True	AAAAAG	-29	NA	62047611	62121458	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_62047776_62114022_62114151_62114282_62114411_62121006
ES_00018860	chr15	+	327	1	FSM	ENSMUSG00000095812.2	ENSMUST00000179326.2	642	1	-89	404	-89	-404	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCCCCCCCCTAAAGGG	NA	False	NA	NA	False	AATGAA	-12	NA	63503456	63503783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_63503500_63503800
ES_00018861	chr15	+	1432	2	FSM	ENSMUSG00000015002.19	ENSMUST00000174135.2	1425	2	-7	0	-7	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCTGTCTTAAAGATTAT	NA	False	NA	NA	False	AATAAA	-21	NA	65658875	65663200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_65659096_65661988
ES_00018862	chr15	+	2862	23	FSM	ENSMUSG00000015002.19	ENSMUST00000173858.8	2848	23	-14	0	-7	0	multi-exon	FALSE	canonical	3	59	junction_22	108.882983667015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGCAAAAATGATGTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	65658875	65741100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65740802
ES_00018868	chr15	+	3264	9	FSM	ENSMUSG00000072501.6	ENSMUST00000230882.2	3263	9	-7	6	-7	-6	multi-exon	FALSE	canonical	3	27	junction_5	13.8834433769148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAGTAATGGCTCTAAT	3823	False	NA	NA	False	AATAAA	-10	NA	66449401	66483459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374
ES_00018871	chr15	+	9092	21	FSM	ENSMUSG00000072501.6	ENSMUST00000229160.2	9383	21	0	291	0	-291	multi-exon	FALSE	canonical	3	6	junction_13	19.1575050567656	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTACTGTGGTAGCT	3850	False	NA	NA	False	AATACA	-22	NA	66449428	66519534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374_66481458_66484869_66485120_66487068_66487258_66487486_66487697_66494609_66494667_66495840_66495949_66500773_66500939_66501648_66501831_66502715_66502816_66504554_66504751_66508532_66508882_66511761_66511925_66513646
ES_00018872	chr15	+	1437	8	NIC	ENSMUSG00000072501.6	novel	6665	21	NA	NA	181	-1521	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	24.2823527085253	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTTAAGGGTCTGTC	4056	False	NA	NA	False	NA	NA	NA	66449634	66481944	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_66449697_66451921_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66475875_66476090_66476625_66476755_66481374
ES_00018884	chr15	+	1704	6	FSM	ENSMUSG00000059895.14	ENSMUST00000230177.2	1680	6	-24	0	-24	0	multi-exon	FALSE	canonical	3	26	junction_1	34.6028900527109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGAAGAGTGTTAT	NA	False	NA	20	True	AATAAA	-14	NA	73596622	73629076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ES_00018885	chr15	+	2648	6	FSM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	-10	622	-10	-622	multi-exon	FALSE	canonical	3	41	junction_1	28.8124972885031	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTGCATCATTCCC	NA	False	NA	NA	False	NA	NA	NA	73620212	73629993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_73620315_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ES_00018886	chr15	+	2340	12	ISM	ENSMUSG00000034730.18	ENSMUST00000187485.7	5621	31	54666	-1	542	0	3prime_fragment	FALSE	canonical	1	1	junction_5	5.66269509178089	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTAGTCTTTTTTTTT	NA	False	NA	5	True	AATAAA	-17	NA	74443345	74461314	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_74443365_74443923_74444075_74444655_74444726_74445950_74446018_74447687_74447774_74452413_74452586_74454740_74454837_74456226_74456282_74458605_74459307_74459955_74459992_74460152_74460261_74460535
ES_00018888	chr15	+	1787	2	FSM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	-8	5	-8	-5	multi-exon	FALSE	canonical	3	79	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCACGTGCACCTGGCCT	4632	False	NA	NA	False	NA	NA	NA	74593044	74596483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74593657_74595308
ES_00018889	chr15	+	1253	5	NIC	ENSMUSG00000022587.15	novel	2068	5	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	241.619923640415	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8025	False	NA	27	True	AATAAA	-15	NA	74827139	74831180	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_74827185_74827415_74827567_74829628_74829727_74830117_74830238_74830341
ES_00018891	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
ES_00018892	chr15	+	1226	3	FSM	ENSMUSG00000022587.15	ENSMUST00000188503.2	1211	3	-15	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	177	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74827567_74829628_74829727_74830117
ES_00018898	chr15	+	8294	3	FSM	ENSMUSG00000047003.16	ENSMUST00000054555.10	8270	3	-24	0	-19	0	multi-exon	FALSE	canonical	2	8	junction_1	23	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCTCCCAGTCTCTCT	NA	False	NA	NA	False	AATAAA	-27	NA	75488508	75501676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75488878_75489892_75491541_75495399
ES_00018901	chr15	+	1865	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	-82	9	-82	0	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCATAATGCTGTGTTGA	NA	False	NA	6	True	AATAAA	-11	NA	75734093	75739248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ES_00018911	chr15	+	1728	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	318	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGGACTAATGTCTT	947	False	NA	4	True	NA	NA	NA	76211664	76214873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76211868_76213229_76213437_76213555
ES_00018917	chr15	+	2154	6	FSM	ENSMUSG00000022551.9	ENSMUST00000229710.2	1791	6	-35	-328	-25	0	multi-exon	FALSE	canonical	3	4240	junction_4	274.648866737149	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	76227697	76230460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ES_00018918	chr15	+	1538	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	-18	0	-18	0	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	76227704	76230460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ES_00018920	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235493	76238572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ES_00018921	chr15	+	1703	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	-17	0	-5	0	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235488	76238573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ES_00018922	chr15	+	1839	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	-170	-18	-170	11	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGCGGGGCCTGCGTC	NA	False	NA	42	True	AATAAA	-34	NA	76235323	76238591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ES_00018924	chr15	+	2329	6	NNC	ENSMUSG00000022554.8	novel	1993	6	NA	NA	0	417	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	42.1454623892063	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCACCGTGTAGACTAGT	3544	False	NA	NA	False	NA	NA	NA	76253097	76256054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_76253741_76253851_76253901_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ES_00018930	chr15	+	2889	3	FSM	ENSMUSG00000022560.10	ENSMUST00000230994.2	2889	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCACAATGTGTCCCTT	NA	False	NA	NA	False	AATAAA	-20	NA	76423163	76426330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76423396_76423582_76423803_76423893
ES_00018936	chr15	+	1480	6	ISM	ENSMUSG00000004187.12	ENSMUST00000230124.2	3193	17	4987	593	1618	-251	3prime_fragment	FALSE	canonical	2	12	junction_4	4.75815090134813	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCCCTTCCTCTTCTAG	NA	False	NA	NA	False	AAAACA	-42	NA	76549885	76551802	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ES_00018937	chr15	+	2817	12	FSM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	6	4	6	0	multi-exon	TRUE	canonical	3	37	junction_1	32.5360575565374	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGCCTTCCCATGTGTCT	NA	False	NA	18	True	GATAAA	-13	NA	76555852	76579115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76555963_76573527_76573695_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ES_00018938	chr15	+	2654	11	FSM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	38	0	6	0	multi-exon	FALSE	canonical	3	82	junction_1	16.1864140562386	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555852	76579119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76555963_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ES_00018944	chr15	+	2853	4	FSM	ENSMUSG00000033728.15	ENSMUST00000137649.8	2832	4	-21	0	-1	0	multi-exon	FALSE	canonical	3	40	junction_1	33.8066397160216	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCATTTCTAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	76594821	76599284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76595731_76597066_76597421_76597600_76598186_76598279
ES_00018946	chr15	+	4803	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	-9	55	6	-55	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATGTTTCAAAGCTATCT	NA	False	NA	NA	False	NA	NA	NA	76594828	76601844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
ES_00018947	chr15	+	3943	3	FSM	ENSMUSG00000033728.15	ENSMUST00000142506.2	3943	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	41.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAACCAAAACAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	76594872	76600848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76595128_76597066_76598186_76598279
ES_00018949	chr15	+	3031	5	FSM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	-71	0	-21	0	multi-exon	FALSE	canonical	3	16	junction_1	32.962099447699	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGGTGTAGCCTGTAC	NA	False	NA	NA	False	AATAAA	-13	NA	76763437	76776589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76774206
ES_00018950	chr15	+	2648	5	NNC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	3	-36	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_3	34.1055347414463	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCATTTACCCATTAAA	NA	False	NA	NA	False	NA	NA	NA	76763537	76776553	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_76763554_76764938_76764983_76765311_76765439_76772433_76772548_76774206
ES_00018951	chr15	+	1384	5	FSM	ENSMUSG00000116024.2	ENSMUST00000230214.2	1384	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	41.8270247567288	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGTAAAGCAACTATTAAA	NA	False	NA	NA	False	ATTAAA	-1	NA	76763633	76785483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76784551
ES_00018952	chr15	+	1032	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	2	-114	2	0	multi-exon	FALSE	canonical	3	59	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784137	76785505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76784216_76784551
ES_00018953	chr15	+	1815	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	-19	-759	-19	759	multi-exon	TRUE	canonical	3	114	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTGGAACCACTGGGCA	NA	False	NA	NA	False	NA	NA	NA	76784090	76786264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76784193_76784551
ES_00018954	chr15	+	1282	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	51	-2	51	2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAACATGTTATTCTA	NA	False	NA	NA	False	ATTAAA	-15	NA	76784215	76785497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76784200_76785500
ES_00018958	chr15	+	853	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	0	7636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4480.06724949526	372	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTGTGTTTTATCTATAA	NA	False	NA	NA	False	NA	NA	NA	76788502	76798150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790507_76798108
ES_00018960	chr15	+	1109	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	-63	-3	-63	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	24	True	AATAAA	-16	NA	76832642	76834932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
ES_00018962	chr15	+	1669	2	FSM	ENSMUSG00000063236.7	ENSMUST00000231058.2	1646	2	-23	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	24	True	AATAAA	-16	NA	76832705	76834932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76833891_76834448
ES_00018965	chr15	+	1331	3	FSM	ENSMUSG00000071711.13	ENSMUST00000169133.8	1309	3	-22	0	4	0	multi-exon	FALSE	canonical	0	0	junction_1	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78290978	78298202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78291064_78294242_78294865_78297578
ES_00018966	chr15	+	1300	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	11	0	11	0	multi-exon	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATTTGTGGTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	78294192	78298206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78294865_78297578
ES_00018968	chr15	+	3050	6	ISM	ENSMUSG00000033287.18	ENSMUST00000089414.12	1180	7	16	-394	16	0	intron_retention	FALSE	canonical	3	64	junction_5	26.081411004775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312843	78323503	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100
ES_00018969	chr15	+	1552	7	FSM	ENSMUSG00000033287.18	ENSMUST00000166142.11	1632	7	80	0	16	0	multi-exon	FALSE	canonical	2	4	junction_5	55.6339724349151	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312843	78323503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321783_78321872_78322686
ES_00018971	chr15	+	300	1	FSM	ENSMUSG00000116499.2	ENSMUST00000230007.2	593	1	338	-45	338	45	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTACCAAACACCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	78705347	78705647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78705300_78705600
ES_00018972	chr15	+	2617	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	-57	0	-57	0	multi-exon	FALSE	canonical	3	20	junction_1	1.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGACCTTGGGGAAAAGC	NA	False	NA	NA	False	AATAAA	-20	NA	78726766	78735097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78726926_78731294_78732020_78733364
ES_00018975	chr15	+	2375	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	4533	False	NA	83	True	AATAAA	-16	NA	78784102	78796247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ES_00018981	chr15	+	629	5	FSM	ENSMUSG00000068220.7	ENSMUST00000229159.2	628	5	-1	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1006.87148509629	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATCCAGCCCTTTCATG	NA	False	NA	9	True	AATAAA	-20	NA	78810924	78814391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78811005_78812169_78812250_78812764_78812868_78813832_78814005_78814197
ES_00018984	chr15	+	1660	8	FSM	ENSMUSG00000033088.20	ENSMUST00000130663.10	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	63.6226118191786	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATACAGAAATGGATTC	NA	False	NA	NA	False	AATAAA	-25	NA	78867276	78879059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78878497
ES_00018988	chr15	+	2345	6	FSM	ENSMUSG00000033047.6	ENSMUST00000230032.2	2345	6	0	0	0	0	multi-exon	FALSE	canonical	3	1681	junction_2	125.477328629518	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	7296	False	NA	30	True	AGTAAA	-20	NA	78967248	78978605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
ES_00018992	chr15	+	452	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTTATATGTGTAAATA	NA	False	NA	-18	True	NA	NA	NA	79025550	79035928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
ES_00018997	chr15	+	2127	3	FSM	ENSMUSG00000042622.15	ENSMUST00000096350.11	1958	3	-173	4	-173	0	multi-exon	FALSE	canonical	3	18	junction_1	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGAAGTGTATGTCTT	2092	False	NA	18	True	AATAAA	-19	NA	79231546	79243272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79231955_79241166_79241234_79241620
ES_00019010	chr15	+	4414	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009727.12	4180	4	-234	0	-224	0	multi-exon	FALSE	canonical	3	37	junction_3	626.014554321401	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTGTGTCACTGTGTT	NA	False	NA	20	True	AATAAA	-20	NA	79975310	80003702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_80000055
ES_00019017	chr15	+	519	2	FSM	ENSMUSG00000022412.15	ENSMUST00000229612.2	506	2	-13	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGAGCCCTGGGCCCTG	2815	False	NA	NA	False	NA	NA	NA	80118280	80118922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80118760_80118882
ES_00019018	chr15	+	4415	6	FSM	ENSMUSG00000022412.15	ENSMUST00000228788.3	4394	6	-21	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	71.0785480999718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGCAGGGCTGGCTCTG	2815	False	NA	NA	False	NA	NA	NA	80118280	80136987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
ES_00019021	chr15	+	5018	7	NNC	ENSMUSG00000022412.15	novel	5148	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	86.1677949635993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2860	False	NA	16	True	AATAAA	-18	NA	80118325	80137572	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529_80134550_80134572
ES_00019023	chr15	+	1730	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	-5	0	-5	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4140	False	NA	32	True	AATAAA	-20	NA	80139379	80141742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80139887_80140407_80140723_80140834
ES_00019039	chr15	+	1675	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350496	81360570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ES_00019040	chr15	+	555	3	FSM	ENSMUSG00000022400.10	ENSMUST00000230219.2	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	326.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACCATTTAAGGCCTTG	NA	False	NA	NA	False	AAAACA	-27	NA	81350544	81355521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81350652_81352355_81352435_81355152
ES_00019041	chr15	+	663	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	-12	0	-12	0	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACGAGGAACCTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	81350829	81359587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ES_00019044	chr15	+	4027	1	FSM	ENSMUSG00000055024.13	ENSMUST00000185375.3	2997	1	-1167	137	-1167	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGATTTTTGTTTCCTCC	1696	False	NA	NA	False	NA	NA	NA	81468384	81472411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81468400_81472400
ES_00019045	chr15	+	10779	31	FSM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	-1213	0	-1167	0	multi-exon	FALSE	canonical	3	47	junction_8	16.0257085126784	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTGTCACTTCTTTGG	1696	False	NA	22	True	AATAAA	-22	NA	81468384	81536278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81470924_81485108_81485747_81492397_81492575_81494555_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81500926_81501065_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ES_00019048	chr15	+	3370	17	FSM	ENSMUSG00000022394.15	ENSMUST00000172748.8	3368	17	-2	0	0	0	multi-exon	FALSE	canonical	3	9	junction_16	166.366864470513	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548154	81572516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571192
ES_00019050	chr15	+	4439	4	FSM	ENSMUSG00000022389.16	ENSMUST00000023024.8	4079	4	-195	-165	173	0	multi-exon	FALSE	canonical	3	69	junction_3	7.84573486395988	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCAGTGGTCTTTTCTG	NA	False	NA	17	True	ATTAAA	-17	NA	81695419	81711064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81695922_81699144_81699463_81705399_81705621_81707666
ES_00019051	chr15	+	791	2	FSM	ENSMUSG00000022389.16	ENSMUST00000168632.2	791	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGTGGCGTACCTGCTC	NA	False	NA	NA	False	GGGGCT	-44	NA	81705143	81707980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81705621_81707666
ES_00019063	chr15	+	2043	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	-62	0	8	0	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2181	False	NA	NA	False	NA	NA	NA	82031389	82058095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
ES_00019067	chr15	+	2529	11	NNC	ENSMUSG00000022456.19	novel	1888	12	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	14.0858084610007	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGCCTGGTCTTTGTCTT	NA	False	NA	NA	False	ACTAAA	-19	NA	82159480	82178773	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_82159688_82163615_82163808_82167259_82167389_82167883_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82177446
ES_00019068	chr15	+	2997	6	FSM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	-1	-1583	-1	1583	multi-exon	FALSE	canonical	3	14	junction_3	3.32264954516723	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTGTGGAATAAAAAGGGAA	1999	False	NA	NA	False	NA	NA	NA	82183153	82200407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82183270_82189871_82189981_82190244_82190387_82190546_82190640_82192723_82192829_82197975
ES_00019070	chr15	+	636	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	801.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230214	82233291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_82230471_82232100_82232243_82233053
ES_00019071	chr15	+	597	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	632.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	False	NA	62	True	AATAAA	-44	NA	82230214	82233292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82230422_82232100_82232242_82233043
ES_00019073	chr15	+	218	1	FSM	ENSMUSG00000116104.2	ENSMUST00000229498.2	314	1	121	-25	121	25	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGTTCCTACCAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-1	NA	82422610	82422828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82422600_82422800
ES_00019079	chr15	+	904	4	NNC	ENSMUSG00000041736.8	novel	837	4	NA	NA	6051	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	92.1013934024164	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83454126	83458404	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_83454247_83455585_83455797_83456400_83456540_83457970
ES_00019083	chr15	+	3791	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	-7	0	-7	0	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGCTTTGATCAGACC	NA	False	NA	79	True	AATAAA	-16	NA	84116236	84199889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
ES_00019085	chr15	+	1676	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-6404	-2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	42.0979141407267	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTCCTGTCTGCCCCCTG	8466	False	NA	2	True	AATAAA	-12	NA	84547416	84587871	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_84547463_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ES_00019086	chr15	+	1830	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84565202	84587873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ES_00019090	chr15	+	4766	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTGGGTACTGTTCTGTT	NA	False	NA	19	True	AATAAA	-19	NA	84807611	84827164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
ES_00019092	chr15	+	2762	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	65.1689163199833	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921238	84947031	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_84921446_84922972_84923166_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ES_00019095	chr15	+	2273	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	0	0	0	0	multi-exon	TRUE	canonical	3	356	junction_14	63.5701845785187	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTACCTTGGTTT	NA	False	NA	35	True	AATAAA	-25	NA	85090205	85136086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
ES_00019099	chr15	+	2692	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7338	False	NA	30	True	ATTAAA	-41	NA	85744146	85760774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ES_00019106	chr15	+	776	5	FSM	ENSMUSG00000022386.13	ENSMUST00000162010.8	774	5	0	-2	0	0	multi-exon	FALSE	canonical	3	9	junction_1	19.3180614969515	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTCTGGGGCTTGCC	1308	False	NA	NA	False	AATAAA	-16	NA	85778407	85781595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_85778485_85779126_85779228_85780560_85780706_85781035_85781119_85781225
ES_00019108	chr15	+	1909	3	FSM	ENSMUSG00000022386.13	ENSMUST00000159730.2	2077	3	168	0	168	0	multi-exon	FALSE	canonical	3	50	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTCTGGGGCTTGCC	2150	False	NA	NA	False	AATAAA	-16	NA	85779249	85781595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_85780706_85781035_85781119_85781225
ES_00019114	chr15	+	5425	3	FSM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	12	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGACTGATGATGGCTT	NA	False	NA	35	True	ATTAAA	-22	NA	88635862	88668719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_88636006_88638962_88639137_88663611
ES_00019122	chr15	+	2043	10	FSM	ENSMUSG00000015363.14	ENSMUST00000165690.2	1941	10	-102	0	9	0	multi-exon	FALSE	canonical	2	4	junction_1	29.3749704491577	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGCTTCCCAGCAGCC	NA	False	NA	NA	False	AATAAA	-19	NA	88960224	88970336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_88960902_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ES_00019124	chr15	+	2059	8	FSM	ENSMUSG00000036561.10	ENSMUST00000226779.2	2072	8	13	0	4	0	multi-exon	FALSE	canonical	2	19	junction_2	4.65109159888563	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTGCTGCTGTTATGAG	6682	False	NA	NA	False	NA	NA	NA	89095774	89147471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137465_89140865_89141053_89143268_89143407_89146555
ES_00019129	chr15	+	3320	20	FSM	ENSMUSG00000008690.16	ENSMUST00000088717.7	3302	20	-18	0	-1	0	multi-exon	TRUE	canonical	1	166	junction_15	242.636453884124	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239920	89257029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254803_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ES_00019130	chr15	+	3224	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	-1	0	-1	0	multi-exon	FALSE	canonical	1	145	junction_1	244.22211859964	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239920	89257029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ES_00019131	chr15	+	3255	20	FSM	ENSMUSG00000008690.16	ENSMUST00000145259.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	269.960005245468	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239965	89257029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ES_00019139	chr15	+	876	2	Intergenic	novelGene_1460	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1405	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCTTAAAACCACTT	NA	False	NA	NA	False	NA	NA	NA	89651812	89653086	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_89652526_89652923
ES_00019141	chr15	+	6457	3	FSM	ENSMUSG00000075470.3	ENSMUST00000231200.2	6457	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	36.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGAATATATTTTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	90108551	90117674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_90108812_90109859_90110058_90111675
ES_00019147	chr15	+	3354	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	-3	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296277	93389379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ES_00019149	chr15	+	3229	7	NIC	ENSMUSG00000036167.17	novel	3351	9	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296225	93389379	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
ES_00019150	chr15	+	3879	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	5	403	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTCTCCTCTCGTTTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	93296317	93389794	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ES_00019154	chr15	+	612	1	FSM	ENSMUSG00000043329.5	ENSMUST00000058951.5	480	1	61	-193	61	193	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTTTAGTTAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	95673695	95674307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_95673700_95674300
ES_00019158	chr15	+	8507	21	FSM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	16.8330032970947	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGGATAAGTGACTTC	NA	False	NA	18	True	AATAAA	-19	NA	96185453	96302873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_96185668_96185774_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ES_00019159	chr15	+	1790	2	FSM	ENSMUSG00000044250.9	ENSMUST00000228521.2	1790	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTCCAAAAGTGGTTC	NA	False	NA	14	True	AATAAA	-15	NA	97259082	97283561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_97259217_97281905
ES_00019160	chr15	+	2251	2	NNC	ENSMUSG00000044250.9	novel	2185	6	NA	NA	15488	14	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTCTGCCTGTTGTGTGT	NA	False	NA	28	True	AATAAA	-29	NA	97274585	97283575	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_97275170_97281908
ES_00019161	chr15	+	2254	2	NNC	ENSMUSG00000044250.9	novel	1790	2	NA	NA	15487	13	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCTGCCTGTTGTGTG	NA	False	NA	27	True	AATAAA	-28	NA	97274584	97283574	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_97275170_97281905
ES_00019165	chr15	+	1624	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	-1	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7680	False	NA	11	True	AATAAA	-17	NA	97862109	97868156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ES_00019167	chr15	+	1418	8	NIC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	50.2548606644985	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7707	False	NA	11	True	AATAAA	-17	NA	97862136	97868156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_97862206_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ES_00019172	chr15	+	2784	12	NIC	ENSMUSG00000003352.15	novel	2477	13	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	13.8026228193853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	55	False	NA	5	True	AATAAA	-16	NA	98532658	98542410	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_98533095_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ES_00019179	chr15	+	723	3	FSM	ENSMUSG00000032783.10	ENSMUST00000230868.2	714	3	-9	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATCTT	NA	False	NA	NA	False	NA	NA	NA	98972858	98973947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98972974_98973230_98973380_98973488
ES_00019182	chr15	+	1564	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98997482_98998703_98999657_99002196
ES_00019185	chr15	+	3096	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99024436	99111096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
ES_00019187	chr15	+	3984	15	FSM	ENSMUSG00000037579.8	ENSMUST00000041415.5	3698	15	-286	0	-286	0	multi-exon	FALSE	canonical	3	10	junction_1	5.04520382468866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGGAACTCAGTACTTT	NA	False	NA	7	True	AATAAA	-8	NA	99122455	99140698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99122933_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99137808_99138767_99138875_99139630_99139708_99139800
ES_00019190	chr15	+	1428	1	FSM	ENSMUSG00000100599.3	ENSMUST00000190683.2	1428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	99149718	99151146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99149700_99151100
ES_00019191	chr15	+	682	8	FSM	ENSMUSG00000023007.16	ENSMUST00000128352.8	658	8	-24	0	-24	0	multi-exon	FALSE	canonical	3	107	junction_1	25.7982755316739	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCCTGGAAAGAGTATAA	NA	False	NA	NA	False	NA	NA	NA	99192943	99203846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831
ES_00019196	chr15	+	3340	26	FSM	ENSMUSG00000023007.16	ENSMUST00000145482.8	3308	26	-32	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	50.458442306516	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGTCCTCTTCATGT	NA	False	NA	44	True	TTTAAA	-25	NA	99193119	99214899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99193310_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213463_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ES_00019197	chr15	+	3127	25	FSM	ENSMUSG00000023007.16	ENSMUST00000023745.13	2619	25	0	-508	0	0	multi-exon	FALSE	canonical	3	102	junction_20	25.2495530763528	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	33	True	TTTAAA	-14	NA	99201163	99214888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ES_00019199	chr15	+	3130	25	FSM	ENSMUSG00000023007.16	ENSMUST00000118287.9	3129	25	-1	0	0	0	multi-exon	FALSE	canonical	3	106	junction_20	24.7694578395787	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	33	True	TTTAAA	-14	NA	99201163	99214888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ES_00019203	chr15	+	919	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161778.8	901	11	-18	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	735.13686480818	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGACCAACTGGCCGTC	NA	False	NA	NA	False	AAGAAA	-6	NA	99290884	99306372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99290922_99297941_99298089_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ES_00019204	chr15	+	929	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	15	0	15	0	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	False	NA	-68	True	NA	NA	NA	99291114	99306416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ES_00019206	chr15	+	852	4	FSM	ENSMUSG00000023010.16	ENSMUST00000160454.2	852	4	0	0	0	0	multi-exon	FALSE	canonical	3	1506	junction_3	164.973398529042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCGAGCCGCCGCAGAC	8509	False	NA	130	True	NA	NA	NA	99303754	99306672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99304113_99304457_99304559_99305148_99305225_99306355
ES_00019217	chr15	+	6477	16	NIC	ENSMUSG00000023025.17	novel	6530	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	302	junction_1	90.2603641325102	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTTTCTTTTTTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	99870716	99914239	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_99870865_99882797_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
ES_00019219	chr15	+	8929	38	FSM	ENSMUSG00000023026.17	ENSMUST00000100203.10	8914	38	-15	0	-15	0	multi-exon	FALSE	canonical	2	4	junction_7	10.5011043281662	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTTAATTCTTAAAC	4842	False	NA	9	True	AATAAA	-13	NA	99936529	100117354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99936791_100013725_100013798_100029782_100029909_100039902_100040029_100049031_100049245_100052037_100052188_100052914_100053038_100055050_100055249_100055757_100055850_100058322_100058434_100059858_100059983_100060559_100060670_100065736_100065840_100067147_100067213_100069000_100069095_100069483_100069604_100071097_100071213_100072307_100072448_100073081_100073219_100076322_100076404_100079189_100079318_100080887_100081003_100084021_100084224_100087912_100088023_100088136_100088218_100088867_100088992_100091720_100091843_100093671_100093784_100096821_100096932_100097340_100097472_100100068_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ES_00019226	chr15	+	1962	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	-21	5	-21	-5	multi-exon	FALSE	canonical	3	19	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGCTTGGCTGCATTT	517	False	NA	7	True	AATAAA	-42	NA	100202620	100212231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_100203226_100210874
ES_00019238	chr15	+	1153	7	NIC	ENSMUSG00000023033.15	novel	2565	15	NA	NA	10	226	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	23.092206477511	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCATGGCCTCAT	6695	False	NA	NA	False	NA	NA	NA	100768551	100857895	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_100768625_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857220_100857313_100857575
ES_00019239	chr15	+	2698	7	NIC	ENSMUSG00000023033.15	novel	7120	27	NA	NA	-16	27	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	22.1560124771785	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACTATTCCCATAAGTGA	6953	False	NA	NA	False	AATAAA	-42	NA	100768809	100859373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_100768950_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857220_100857313_100857575
ES_00019242	chr15	+	2056	8	FSM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	-23	0	-23	0	multi-exon	FALSE	canonical	3	148	junction_1	31.968096341094	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	6218	False	NA	12	True	TATAAA	-21	NA	101122045	101130637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
ES_00019243	chr15	+	1729	7	NNC	ENSMUSG00000000531.6	novel	2033	8	NA	NA	4109	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	64.6838465151849	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	NA	False	NA	12	True	TATAAA	-21	NA	101126177	101130637	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_101126281_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
ES_00019245	chr15	+	2477	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101164726	101172676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ES_00019246	chr15	+	1278	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8022	False	NA	31	True	AATAAA	-23	NA	101182144	101188826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_101182427_101184813_101185132_101188148
ES_00019247	chr15	+	605	2	FSM	ENSMUSG00000037204.8	ENSMUST00000230525.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTGCATCCCCTGGGA	NA	False	NA	NA	False	AAAAAG	-19	NA	101184613	101188235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_101185132_101188148
ES_00019251	chr15	+	3854	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982207	102005608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ES_00019260	chr15	+	4385	8	NNC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	41	-3	intron_retention	FALSE	canonical	1	1	junction_1	60.1063682999071	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACATTCCATGTCCTCTT	1008	False	NA	14	True	AATAAA	-15	NA	102112184	102124030	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_102112238_102112789_102113522_102113663_102113741_102116205_102116356_102116670_102116801_102117187_102117312_102117589_102117709_102121030
ES_00019261	chr15	+	4170	8	NNC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	41	-2	at_least_one_novel_splicesite	FALSE	canonical	1	22	junction_5	49.2457394821406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATTCCATGTCCTCTTT	1008	False	NA	15	True	AATAAA	-16	NA	102112184	102124031	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116670_102116801_102117187_102117312_102117589_102117709_102121030
ES_00019262	chr15	+	4171	8	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	55.5683069266455	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATGTCCTCTTTGAGAA	1008	False	NA	20	True	AATAAA	-21	NA	102112184	102124036	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ES_00019263	chr15	+	3855	7	NIC	ENSMUSG00000046897.18	novel	989	7	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	67.6824694190945	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATGTCCTCTTTGAGAA	1008	False	NA	20	True	AATAAA	-21	NA	102112184	102124036	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102112238_102113005_102113319_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
ES_00019264	chr15	+	3882	7	FSM	ENSMUSG00000046897.18	ENSMUST00000119800.8	3882	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	68.0579818161609	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTCTTTGAGAAGACTT	0	True	NA	25	True	AATAAA	-26	NA	102113043	102124041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102113319_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ES_00019269	chr15	+	6664	31	FSM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	-6	0	-6	0	multi-exon	TRUE	canonical	3	138	junction_1	58.1614706370692	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	353	False	NA	17	True	AATAAA	-17	NA	102204694	102232792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102204851_102205194_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ES_00019274	chr15	+	827	5	FSM	ENSMUSG00000001289.13	ENSMUST00000168805.8	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	835	junction_1	33.0709464636257	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCAATGGCCTCCTGG	386	False	NA	-52	True	AATGAA	-40	NA	102234602	102239843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102234696_102234867_102235285_102236956_102237032_102237146_102237253_102239707
ES_00019275	chr15	+	591	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	-21	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGGGTGGTCTATTCT	386	False	NA	26	True	AATAAA	-14	NA	102234602	102239921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
ES_00019283	chr15	+	1511	9	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	900	85	819	0	3prime_fragment	FALSE	canonical	1	3	junction_1	61.9273768215641	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACATGCCTACTGCTGTCA	NA	False	NA	-72	True	NA	NA	NA	102354701	102362980	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_102354891_102355142_102355215_102355434_102355548_102355665_102355897_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
ES_00019284	chr15	+	1330	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6453	-10	-339	7	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTGTTTTTACTTCTT	NA	False	NA	23	True	AATAAA	-23	NA	102360254	102363075	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
ES_00019285	chr15	+	1047	6	NNC	ENSMUSG00000023047.12	novel	611	3	NA	NA	-259	7	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	60.4417074543729	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTGTTTTTACTTCTT	NA	False	NA	23	True	AATAAA	-23	NA	102360334	102363075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_102360381_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
ES_00019286	chr15	+	623	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	201	-90	37	2	3prime_fragment	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCAATGTGTTTTTAC	NA	False	NA	18	True	AATAAA	-18	NA	102360794	102363070	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_102360995_102362647
ES_00019288	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2405	False	NA	16	True	AATAAA	-19	NA	102367636	102371217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
ES_00019289	chr15	+	1353	4	FSM	ENSMUSG00000023048.14	ENSMUST00000171245.8	1353	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	222.770933671538	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCTGTGCCATTACCTT	2435	False	NA	18	True	AATAAA	-21	NA	102367666	102371219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102368017_102368542_102368582_102368804_102369155_102370605
ES_00019291	chr15	+	1665	14	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	147.555385248985	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2010	False	NA	5	True	ATTAAA	-5	NA	102378974	102407316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ES_00019292	chr15	+	1753	15	NIC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	145.271894974175	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2015	False	NA	5	True	ATTAAA	-5	NA	102378979	102407316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ES_00019293	chr15	+	1677	14	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	151.135778916308	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGGAGCTTTTTCTTT	2018	False	NA	4	True	ATTAAA	-4	NA	102378982	102407315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ES_00019294	chr15	+	1746	15	NIC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	149.78596975249	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2019	False	NA	5	True	ATTAAA	-5	NA	102378983	102407316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ES_00019295	chr15	+	1597	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	-21	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2102	False	NA	5	True	ATTAAA	-5	NA	102379066	102407316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ES_00019296	chr15	+	516	5	FSM	ENSMUSG00000056851.15	ENSMUST00000229275.2	516	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	63.021325755652	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGCTATATACCCTCAGT	2147	False	NA	12	True	AATAAA	-25	NA	102379111	102383199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009
ES_00019298	chr15	+	1499	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229854.2	1499	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	165.819713890698	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2254	False	NA	5	True	ATTAAA	-5	NA	102379218	102407316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ES_00019299	chr15	+	3222	14	FSM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	129.880737282939	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAATAAGAGTGTCTTT	4207	False	NA	NA	False	NA	NA	NA	102381171	102408496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ES_00019300	chr15	+	1086	14	FSM	ENSMUSG00000056851.15	ENSMUST00000230114.2	1086	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_11	136.533456029592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAGCAGACCCATCCAT	4804	False	NA	NA	False	NA	NA	NA	102381768	102406960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ES_00019301	chr15	+	1254	11	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	171	junction_8	134.656637415316	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	5719	False	NA	5	True	ATTAAA	-5	NA	102382683	102407316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ES_00019312	chr15	+	4040	2	FSM	ENSMUSG00000050328.3	ENSMUST00000055562.3	1031	2	-763	-2246	-763	2246	multi-exon	FALSE	canonical	3	24	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATGTTTTGAGAACCAT	NA	False	NA	21	True	ATTAAA	-18	NA	102844428	102849290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102845892_102846713
ES_00019314	chr15	+	1983	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	5972	False	NA	30	True	AATAAA	-24	NA	102942820	102945278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102943588_102944062
ES_00019317	chr15	+	3408	13	FSM	ENSMUSG00000046434.17	ENSMUST00000230489.2	3118	13	-290	0	-255	0	multi-exon	FALSE	canonical	2	11	junction_11	5605.39520548928	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103148603	103155119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682_103154394_103154772_103154849_103154971
ES_00019318	chr15	+	1283	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103148858	103155119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
ES_00019319	chr15	+	1541	9	FSM	ENSMUSG00000046434.17	ENSMUST00000231141.2	1541	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	4388.75483480224	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148920	103153382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152385_103152456_103152682
ES_00019323	chr15	+	223	2	Intergenic	novelGene_1494	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCAGGTGCTCTTAATT	8106	False	NA	NA	False	NA	NA	NA	103261126	103314182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_103261158_103313990
ES_00019327	chr15	+	3259	15	FSM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	-1	0	-1	0	multi-exon	FALSE	canonical	2	3	junction_1	6.01740672328781	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103423345	103438479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_103423849_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ES_00019329	chr15	-	1641	1	FSM	ENSMUSG00000114999.2	ENSMUST00000227053.2	2308	1	746	-79	746	79	mono-exon	FALSE	NA	NA	NA	NA	NA	4477	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTGGCGACAACATTATG	NA	False	NA	NA	False	AATATA	-17	NA	3248434	3246793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_3246800_3248400
ES_00019330	chr15	-	1316	8	FSM	ENSMUSG00000091119.3	ENSMUST00000226261.2	1327	8	3	8	3	-8	multi-exon	FALSE	canonical	2	12	junction_4	8.63547500554709	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTTGTTGTTCTTTCTC	NA	False	NA	NA	False	AGTAAA	-22	NA	3330675	3309559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586
ES_00019331	chr15	-	798	9	FSM	ENSMUSG00000091119.3	ENSMUST00000165386.2	798	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	8.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAGCACTTAATGCATTA	8096	False	NA	NA	False	NA	NA	NA	3333008	3310108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586_3330676_3332977
ES_00019332	chr15	-	1525	7	FSM	ENSMUSG00000022184.9	ENSMUST00000022791.9	1565	7	0	40	0	-40	multi-exon	FALSE	canonical	3	8	junction_6	2.40947204913349	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTAAATTCCGCAAAAC	NA	False	NA	NA	False	AATGAA	-45	NA	4009055	3994966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_3995275_3998388_3998565_4000818_4000995_4001110_4001187_4005238_4005460_4007243_4007480_4008723
ES_00019334	chr15	-	5087	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	0	-11	0	11	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTTATATTTTATTC	2180	False	NA	1	True	AATAAA	-31	NA	4025226	4011505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
ES_00019335	chr15	-	235	1	FSM	ENSMUSG00000087221.4	ENSMUST00000194637.2	4379	1	1624	2520	1624	-263	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGATGCATGAAGGAGACC	NA	False	NA	NA	False	NA	NA	NA	4052350	4052115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_4052100_4052400
ES_00019336	chr15	-	482	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	716	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCCTGGGACGGAGCC	NA	False	NA	NA	False	NA	NA	NA	5150617	5150135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_5150100_5150600
ES_00019337	chr15	-	1351	3	Antisense	novelGene_ENSMUSG00000115093.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	1.5	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGATTAGAGTCCCAAC	NA	False	NA	NA	False	NA	NA	NA	6074120	6054074	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_6055131_6073729_6073988_6074083
ES_00019338	chr15	-	2133	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	0	-7	0	0	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCCTTTCTGTTATGG	NA	False	NA	1	True	AATAAA	-21	NA	8128675	7902535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
ES_00019339	chr15	-	1130	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGCATTATTCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8128693	8121710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
ES_00019340	chr15	-	10600	46	NIC	ENSMUSG00000022141.8	novel	9423	47	NA	NA	-155	476	intron_retention	TRUE	canonical	2	7	junction_42	24.0098333764612	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAAACACACTACATTTT	NA	False	NA	NA	False	TTTAAA	-31	NA	8474102	8319624	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
ES_00019341	chr15	-	9423	47	FSM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_43	23.7522658356028	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTGTTTCCATTTGAA	NA	False	NA	0	True	AATAAA	-22	NA	8473947	8320100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
ES_00019342	chr15	-	4141	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	19	3	19	-3	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACATTTGTATGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	8740229	8663610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
ES_00019343	chr15	-	1252	5	FSM	ENSMUSG00000005360.15	ENSMUST00000153455.8	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.8156986040721	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAATGCATAACAT	NA	False	NA	NA	False	NA	NA	NA	8739900	8710004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_8710661_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ES_00019345	chr15	-	3119	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	0	-1	0	1	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAGCTGCTTTTTATA	NA	False	NA	NA	False	AATAAA	-21	NA	9140452	9112071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
ES_00019346	chr15	-	512	2	Antisense	novelGene_ENSMUSG00000049152.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	853	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGTCTTGGCTACATTT	NA	False	NA	2	True	NA	NA	NA	9357183	9354832	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_9355086_9356924
ES_00019348	chr15	-	1532	9	FSM	ENSMUSG00000072663.13	ENSMUST00000159368.2	1422	9	-59	-51	2	48	multi-exon	FALSE	canonical	2	4	junction_2	3.23795846174715	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCTCTCCTGGGTTA	NA	False	NA	NA	False	AATAGA	-10	NA	9748922	9704346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9729702_9729956_9740597_9740701_9748797
ES_00019349	chr15	-	1232	11	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	53343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	734.144427207617	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCCAAACAAATGACCAAGC	NA	False	NA	NA	False	NA	NA	NA	10485973	10421521	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10421552_10476266_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ES_00019350	chr15	-	2060	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	660	junction_1	60.8163473021321	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGCTTCAGTGATTTA	-35	True	NA	-15	True	ATTAAA	-23	NA	10470602	10446841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
ES_00019351	chr15	-	2581	11	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	734.144427207617	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGCTTTTTTTTTTTTCG	NA	False	NA	NA	False	AATAAA	-28	NA	10485973	10474861	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10475140_10475165_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ES_00019352	chr15	-	2667	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	0	-3	0	3	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGCTTTTTTTTTTTTCG	NA	False	NA	NA	False	AATAAA	-28	NA	10486033	10474861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ES_00019354	chr15	-	4728	9	NNC	ENSMUSG00000022246.15	novel	4909	18	NA	NA	9934	47262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.3056979737809	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTACTTTTACAACTTGT	NA	False	NA	NA	False	NA	NA	NA	10590239	10521792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10521820_10569064_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344
ES_00019355	chr15	-	4819	18	FSM	ENSMUSG00000022246.15	ENSMUST00000169385.3	4759	18	-57	-3	0	3	multi-exon	FALSE	canonical	3	80	junction_8	29.2639816641101	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGGTGTTTGTGAGCA	32	True	NA	0	True	AATAAA	-29	NA	10714710	10569051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
ES_00019356	chr15	-	4903	17	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-174	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	36.5957114119947	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8666	False	NA	-3	True	AATAAA	-26	NA	10714884	10569054	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
ES_00019357	chr15	-	2680	20	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	0	18305	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	740.076727324181	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGGGAATGAAAATCAGA	NA	False	NA	NA	False	NA	NA	NA	11399751	11364081	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_11364112_11383741_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
ES_00019358	chr15	-	3982	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	0	23	0	-23	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCGTGTTTATTATTAGAT	NA	False	NA	NA	False	AATAAA	-4	NA	11399751	11382409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
ES_00019362	chr15	-	6892	8	FSM	ENSMUSG00000022206.8	ENSMUST00000066529.5	6892	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	7.24498419034627	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCCTGTCTATAATTC	1480	False	NA	-1	True	ATTAAA	-18	NA	11905725	11839981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_11845375_11846383_11846472_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
ES_00019363	chr15	-	2437	8	FSM	ENSMUSG00000022206.8	ENSMUST00000228603.2	2437	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	6.17433793856409	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGGAGGTGTGTGACAA	1445	False	NA	NA	False	ATTAAA	-22	NA	11905760	11844468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
ES_00019364	chr15	-	1185	8	NIC	ENSMUSG00000022206.8	novel	1969	9	NA	NA	18	-579	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	11.4481974340852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAATGCTGTTAAGTGTTC	NA	False	NA	NA	False	AATATA	-10	NA	11907269	11845047	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_11845375_11846383_11846472_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11907156
ES_00019365	chr15	-	3384	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	-12	0	12	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCCCATGTTCACACACC	809	False	NA	NA	False	AATAAA	-23	NA	11996144	11981412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ES_00019366	chr15	-	664	5	FSM	ENSMUSG00000022205.16	ENSMUST00000110504.2	675	5	11	0	11	0	multi-exon	FALSE	canonical	3	7	junction_4	3499.76144722751	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGGATTGCTTTGTG	NA	False	NA	13	True	ATTAAA	-32	NA	11997058	11984126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996956
ES_00019367	chr15	-	363	1	FSM	ENSMUSG00000107344.2	ENSMUST00000201323.2	363	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCTTCCCCATGGGCCA	598	False	NA	NA	False	NA	NA	NA	12032013	12031650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_12031600_12032000
ES_00019368	chr15	-	470	1	FSM	ENSMUSG00000097221.2	ENSMUST00000180521.2	462	1	0	-8	0	8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGATGTGGCAGCGCCGGC	NA	False	NA	NA	False	NA	NA	NA	12321985	12321515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_12321500_12322000
ES_00019369	chr15	-	3904	9	FSM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	0	62	0	-62	multi-exon	FALSE	canonical	3	264	junction_8	28.8809517675578	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACAATGTATTTTGTAT	NA	False	NA	NA	False	TTTAAA	-8	NA	12824735	12808324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
ES_00019370	chr15	-	3551	8	FSM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	19	-364	0	-231	multi-exon	FALSE	canonical	3	60	junction_7	97.0238767163074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTTTTATTATTTTAG	NA	False	NA	-2	True	AATAAA	-21	NA	12824697	12808493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
ES_00019371	chr15	-	1971	3	FSM	ENSMUSG00000022195.8	ENSMUST00000228888.2	1971	3	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	25	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAGAAAAGGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	12824727	12819989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_12821640_12823646_12823793_12824552
ES_00019372	chr15	-	377	2	Intergenic	novelGene_1345	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	166	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAATAAAATTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	18527037	18519967	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_18520152_18526844
ES_00019373	chr15	-	1031	1	FSM	ENSMUSG00000115516.2	ENSMUST00000226898.2	1598	1	93	474	93	-474	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGGCCTTCCGAGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	19456345	19455314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_19455300_19456300
ES_00019374	chr15	-	1525	1	FSM	ENSMUSG00000047565.6	ENSMUST00000052910.6	1537	1	-41	53	-41	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAATAATAATAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	20666877	20665352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_20665400_20666900
ES_00019375	chr15	-	469	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCGTTGGTGATTTTGG	9420	False	NA	NA	False	NA	NA	NA	22705470	22699812	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_22700210_22705398
ES_00019376	chr15	-	5269	1	Intergenic	novelGene_1348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	401	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCGTTGGTGATTTTG	9808	False	NA	NA	False	NA	NA	NA	22705082	22699813	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_22699800_22705100
ES_00019377	chr15	-	4320	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	17	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	9809	False	NA	NA	False	NA	NA	NA	22705081	22699816	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_22700670_22701521_22704588_22704680
ES_00019378	chr15	-	5175	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	693	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCTCGTTGGTGATTTT	9808	False	NA	NA	False	NA	NA	NA	22705082	22699814	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_22704588_22704680
ES_00019380	chr15	-	1859	2	FSM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	0	-4	0	4	multi-exon	FALSE	canonical	3	95	junction_1	0	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTTTGGCTTGATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	25413850	25363358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_25365005_25413637
ES_00019381	chr15	-	490	1	FSM	ENSMUSG00000115593.2	ENSMUST00000228649.2	492	1	48	-46	48	46	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTAGCTCAGGAGAGC	-6	True	NA	NA	False	NA	NA	NA	25840649	25840159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_25840200_25840600
ES_00019383	chr15	-	1491	7	FSM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23.0771652408946	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGTTTTGTATTTGATT	NA	False	NA	-5	True	AATGAA	-40	NA	27630779	27606004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27623367_27623445_27630543
ES_00019385	chr15	-	428	3	FSM	ENSMUSG00000056069.11	ENSMUST00000232492.2	562	3	134	0	134	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGTAAAGATAAAAGTGT	4269	False	NA	NA	False	NA	NA	NA	27660104	27657128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_27657158_27658130_27658401_27659975
ES_00019387	chr15	-	7306	4	FSM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	160	0	2	0	multi-exon	FALSE	canonical	2	3	junction_2	1.88561808316413	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTATTTTCCTGTCAT	49	False	NA	NA	False	AATAAA	-37	NA	31367712	31291623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367184
ES_00019389	chr15	-	435	1	FSM	ENSMUSG00000068964.6	ENSMUST00000091031.6	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTAGTGGATCTCAAA	6666	False	NA	NA	False	AAGAAA	-45	NA	31446963	31446528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31446500_31447000
ES_00019390	chr15	-	6262	26	FSM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	0	-2	0	2	multi-exon	FALSE	canonical	3	82	junction_10	16.0775122453693	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGGCTGTGTGTTTTC	NA	False	NA	NA	False	AATAAA	-27	NA	31531199	31456034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500_31486582_31488937_31488997_31490721_31490774_31492884_31492918_31494216_31494279_31496149_31496340_31498719_31498889_31501061_31501135_31502865_31503010_31505830_31505905_31509871_31509969_31530948
ES_00019391	chr15	-	1029	1	FSM	ENSMUSG00000115224.2	ENSMUST00000226633.2	350	1	-80	-599	-80	599	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGAAAATGTAGTTTTC	9587	False	NA	NA	False	NA	NA	NA	31521499	31520470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31520500_31521500
ES_00019393	chr15	-	845	5	FSM	ENSMUSG00000022234.16	ENSMUST00000161266.2	845	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	2532.72531080652	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCCGAAAGTGAGTGCC	114	False	NA	NA	False	CATAAA	-36	NA	31601685	31594490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601447
ES_00019394	chr15	-	769	4	FSM	ENSMUSG00000022234.16	ENSMUST00000159121.2	769	4	0	0	0	0	multi-exon	FALSE	canonical	3	5907	junction_1	275.901351130355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAATCATTTTGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	31601886	31595586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31595990_31597556_31597722_31598145_31598207_31601746
ES_00019395	chr15	-	212	1	FSM	ENSMUSG00000115188.2	ENSMUST00000227734.2	797	1	592	-7	592	7	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGAATTTTCTGTACCT	NA	False	NA	NA	False	AAAAAG	-40	NA	31655120	31654908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31654900_31655100
ES_00019397	chr15	-	459	1	FSM	ENSMUSG00000038984.5	ENSMUST00000042021.5	4010	1	3516	35	3516	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATGGAAAAAAAATAAAAAA	3338	False	NA	NA	False	CATAAA	-22	NA	33684514	33684055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_33684100_33684500
ES_00019398	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	675	False	NA	-20	True	AATAAA	-27	NA	34443054	34440650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_34440751_34441377_34441509_34442780
ES_00019399	chr15	-	575	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	-5	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	361	False	NA	-20	True	AATAAA	-27	NA	34443368	34440650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
ES_00019401	chr15	-	1011	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	2	-9	2	9	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTGTTCTCTTATTTT	NA	False	NA	-1	True	AATAAA	-30	NA	34495399	34484157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
ES_00019403	chr15	-	3430	11	FSM	ENSMUSG00000038879.9	ENSMUST00000040791.9	4331	11	463	438	-6	-438	multi-exon	FALSE	canonical	2	3	junction_3	2.40831891575846	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTTGCCAAGCTCTGG	296	False	NA	NA	False	ATTAAA	-39	NA	34678895	34573382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_34575718_34577715_34577811_34578853_34578918_34582866_34582956_34584775_34584912_34600160_34600258_34609318_34609441_34625117_34625178_34648811_34648984_34650527_34650597_34678704
ES_00019405	chr15	-	492	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	11	0	11	0	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	False	NA	-1	True	AATAAA	-22	NA	35938381	35932121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
ES_00019406	chr15	-	3038	2	FSM	ENSMUSG00000014313.16	ENSMUST00000127999.2	3038	2	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAAGTCTTTGCTTGGT	NA	False	NA	-8	True	AATAAA	-15	NA	35938353	35932128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_35932244_35935430
ES_00019408	chr15	-	4278	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	0	-1	0	1	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGTGCCCAGGAATT	NA	False	NA	2	True	AATAAA	-18	NA	36283293	36240077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
ES_00019409	chr15	-	1144	2	FSM	ENSMUSG00000022280.10	ENSMUST00000227735.2	1136	2	-25	17	-12	-17	multi-exon	FALSE	canonical	3	197	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAGTCAGAAATTCTAA	NA	False	NA	NA	False	NA	NA	NA	36283305	36265281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36266178_36283057
ES_00019411	chr15	-	2491	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	19	-1	-12	1	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCGGCCATTTTCTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	36496947	36477812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
ES_00019412	chr15	-	2665	14	FSM	ENSMUSG00000013611.15	ENSMUST00000013755.12	2696	14	31	0	26	0	multi-exon	FALSE	canonical	2	5	junction_13	8.19438399112971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTGTTTCAATTTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	36555687	36504207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36555592
ES_00019413	chr15	-	2318	14	FSM	ENSMUSG00000013611.15	ENSMUST00000161202.8	2344	14	26	0	26	0	multi-exon	FALSE	canonical	2	5	junction_13	9.09385643454255	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGATGAATACAGAGTTTG	NA	False	NA	NA	False	AATAAA	-8	NA	36555687	36504557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36505620_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36555592
ES_00019414	chr15	-	1052	7	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2364.88741216622	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	10029	False	NA	NA	False	NA	NA	NA	36598556	36568007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568045_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445
ES_00019415	chr15	-	2856	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1528.4851702112	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568046_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00019416	chr15	-	2855	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1528.4851702112	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568047_36595905_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00019417	chr15	-	2818	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	-1	0	1	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	-6	True	AATAAA	-17	NA	36609217	36595903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00019422	chr15	-	2916	3	FSM	ENSMUSG00000022283.16	ENSMUST00000146327.2	2916	3	0	0	0	0	multi-exon	FALSE	canonical	3	5117	junction_1	52.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACTA	377	False	NA	NA	False	NA	NA	NA	36609217	36603739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36605802_36605987_36606182_36608557
ES_00019426	chr15	-	3287	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	1	0	1	0	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	NA	False	NA	-39	True	NA	NA	NA	36794781	36771013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
ES_00019427	chr15	-	2285	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	NA	False	NA	NA	False	NA	NA	NA	36794775	36771812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
ES_00019428	chr15	-	2122	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	0	0	0	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	440	False	NA	-12	True	NA	NA	NA	36794081	36771947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ES_00019433	chr15	-	1403	1	FSM	ENSMUSG00000115848.2	ENSMUST00000227699.2	1347	1	120	-176	120	176	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACCCCTTTCCTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	37172528	37171125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37171100_37172500
ES_00019434	chr15	-	4577	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	0	-16	0	16	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTACATTTTTAAATGG	7108	False	NA	NA	False	AATAAA	-32	NA	37961347	37924179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ES_00019435	chr15	-	535	1	FSM	ENSMUSG00000085442.2	ENSMUST00000148102.2	466	1	0	-69	0	69	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAATTGGGAACAA	NA	False	NA	NA	False	AATATA	-35	NA	37944036	37943501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37943500_37944000
ES_00019437	chr15	-	2953	8	FSM	ENSMUSG00000037487.8	ENSMUST00000228368.2	2953	8	0	0	0	0	multi-exon	FALSE	canonical	3	850	junction_6	55.1535888890917	1991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTGAAGAAACAGTTTT	5733	False	NA	NA	False	AATAAA	-21	NA	37979278	37967571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265
ES_00019438	chr15	-	9242	59	FSM	ENSMUSG00000037487.8	ENSMUST00000110336.4	9242	59	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	176.45579964147	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTTATGGTGTTATTT	NA	False	NA	-5	True	AATAAA	-31	NA	38079098	37968102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136_38000249_38000813_38000938_38002460_38002701_38002800_38002962_38004067_38004198_38004289_38004417_38004492_38004612_38004785_38004933_38006111_38006204_38006698_38006848_38008193_38008292_38008903_38009028_38009362_38009459_38009869_38010022_38013685_38013813_38015181_38015393_38018522_38018721_38019131_38019287_38019477_38019590_38019673_38019818_38021806_38021920_38022608_38022719_38024990_38025176_38028876_38028995_38029742_38029898_38030865_38030977_38031065_38031183_38038059_38038254_38040996_38041147_38041691_38041852_38042018_38042209_38045936_38046057_38047278_38047356_38047786_38047869_38048348_38048394_38078607
ES_00019439	chr15	-	3562	7	FSM	ENSMUSG00000037487.8	ENSMUST00000226369.2	3562	7	0	0	0	0	multi-exon	FALSE	canonical	3	850	junction_5	54.850554539889	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAATTAAGTATGTTC	6686	False	NA	-40	True	NA	NA	NA	37978325	37968137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37975916_37976303_37976480_37978265
ES_00019440	chr15	-	9225	59	FSM	ENSMUSG00000037487.8	ENSMUST00000226414.2	8397	59	-429	-399	0	0	multi-exon	FALSE	canonical	0	0	junction_21	178.88035064093	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAATTAAGTATGTTC	NA	False	NA	-40	True	NA	NA	NA	38079098	37968137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136_38000249_38000813_38000938_38002460_38002701_38002800_38002962_38004067_38004198_38004289_38004417_38004492_38004612_38004785_38004933_38006111_38006204_38006698_38006848_38008193_38008292_38008903_38009028_38009362_38009459_38009869_38010022_38013685_38013813_38015181_38015393_38018522_38018721_38019131_38019287_38019477_38019590_38019673_38019818_38021806_38021920_38022608_38022719_38024990_38025176_38028876_38028995_38029742_38029898_38030865_38030977_38031065_38031183_38038059_38038272_38040996_38041147_38041691_38041852_38042018_38042209_38045936_38046057_38047278_38047356_38047786_38047869_38048348_38048394_38078607
ES_00019441	chr15	-	3046	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	-2	0	2	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGAGTCTGTTGTATGTG	NA	False	NA	-5	True	AATAAA	-20	NA	38300950	38294654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
ES_00019443	chr15	-	4871	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	0	0	0	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGGTGGTTGGTGTTTG	NA	False	NA	-1	True	ATTAAA	-15	NA	38519510	38487670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ES_00019444	chr15	-	4112	12	FSM	ENSMUSG00000037458.16	ENSMUST00000129589.8	4109	12	0	-3	0	0	multi-exon	FALSE	canonical	2	46	junction_7	170.115711713824	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTACTTTGATGGCTT	NA	False	NA	-8	True	GATAAA	-16	NA	38519413	38488481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ES_00019450	chr15	-	623	1	FSM	ENSMUSG00000115491.2	ENSMUST00000227335.2	845	1	60	162	60	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCATGGGCAGCAATTGAC	NA	False	NA	NA	False	NA	NA	NA	38576833	38576210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_38576200_38576800
ES_00019451	chr15	-	5913	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	0	-8	0	8	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCTTTCATTTACTTA	NA	False	NA	NA	False	AATAAA	-24	NA	38976111	38954617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ES_00019454	chr15	-	2104	10	FSM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	6	0	3	0	multi-exon	FALSE	canonical	0	0	junction_5	67.0043300609265	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39720860	39646092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_39646506_39647964_39648111_39656622_39656831_39687561_39687705_39690259_39690402_39691370_39691528_39705318_39705509_39707253_39707434_39710004_39710164_39720494
ES_00019455	chr15	-	4114	7	FSM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	0	-5	0	5	multi-exon	FALSE	canonical	3	34	junction_6	6.95221787153807	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCTTTATTTTTGTTG	NA	False	NA	3	True	ATTAAA	-41	NA	39807184	39733979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39767934_39767992_39806999
ES_00019456	chr15	-	4263	6	FSM	ENSMUSG00000022305.14	ENSMUST00000110305.3	4244	6	0	-19	0	5	multi-exon	FALSE	canonical	3	14	junction_5	13.6733317081098	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCTTTATTTTTGTTG	NA	False	NA	3	True	ATTAAA	-41	NA	39807390	39733979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39806999
ES_00019457	chr15	-	227	2	Antisense	novelGene_ENSMUSG00000048559.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTCACATTATATGTCAT	NA	False	NA	NA	False	NA	NA	NA	41054265	40984786	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_40984816_41054067
ES_00019459	chr15	-	2065	2	FSM	ENSMUSG00000042895.7	ENSMUST00000054742.7	2979	2	10	904	10	-904	multi-exon	FALSE	canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACTCTGTGAAACGAATA	NA	False	NA	NA	False	AATAAA	-16	NA	41733106	41728375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_41729749_41732414
ES_00019461	chr15	-	1506	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	0	0	0	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2663	False	NA	-22	True	AATAAA	-16	NA	43146115	43113453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
ES_00019462	chr15	-	717	7	FSM	ENSMUSG00000022336.4	ENSMUST00000226415.2	717	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1349.53367460352	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAGAAACCATAGACAA	2756	False	NA	NA	False	NA	NA	NA	43146022	43129553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43144414_43144625_43145998
ES_00019463	chr15	-	5075	10	FSM	ENSMUSG00000038736.11	ENSMUST00000227843.2	5077	10	0	2	0	-2	multi-exon	FALSE	canonical	3	89	junction_5	79.6338844685826	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTGTGTCTTGTCTG	NA	False	NA	NA	False	AATAAA	-21	NA	44291269	44236560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263624_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
ES_00019464	chr15	-	2600	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGTTTAGATTGGT	NA	False	NA	71	True	AATAAA	-19	NA	44291703	44239466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
ES_00019465	chr15	-	2162	2	FSM	ENSMUSG00000038736.11	ENSMUST00000228319.2	2163	2	0	1	0	-1	multi-exon	FALSE	canonical	3	335	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	44291204	44282254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_44284270_44291057
ES_00019469	chr15	-	1255	9	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	0	14369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	639.504104756177	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTCCTTGGACAGTG	NA	False	NA	NA	False	NA	NA	NA	51728850	51635584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_51635617_51649956_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ES_00019470	chr15	-	1306	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	-11	0	11	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTGTTTCAATTCTT	NA	False	NA	-1	True	AATAAA	-35	NA	51728919	51649942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ES_00019471	chr15	-	3615	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	341	0	-341	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATATGTCACAAGAGAAAT	NA	False	NA	2	True	AATAAA	-43	NA	51855143	51825976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
ES_00019473	chr15	-	7414	11	FSM	ENSMUSG00000061731.10	ENSMUST00000077273.9	7663	11	0	249	0	-249	multi-exon	TRUE	canonical	3	89	junction_10	11.8574870862253	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGTTTTCCACATTTG	NA	False	NA	NA	False	AATACA	-38	NA	53209555	52927682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_52932246_52936688_52936861_52939164_52939326_52946480_52946571_52951450_52951547_52953326_52953446_52955678_52955812_52965080_52965201_52969422_52969531_52970873_52970968_53207797
ES_00019475	chr15	-	4815	27	NIC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_26	46.5584985473356	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTTGTTTTTCTTTA	NA	False	NA	-3	True	AATAAA	-21	NA	54935548	54878523	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_54879550_54879768_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934844_54935242
ES_00019476	chr15	-	5036	26	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	0	5	intron_retention	FALSE	non_canonical	1	74	junction_25	28.543300439858	2468	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGTTTTTCTTTATC	NA	False	NA	-1	True	AATAAA	-23	NA	54935548	54878521	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934843_54935241
ES_00019479	chr15	-	1552	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	0	-53	0	50	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTAATGATGTGTGTGT	NA	False	NA	45	True	ATTAAA	-21	NA	54953876	54939444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ES_00019480	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953887	54939494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ES_00019481	chr15	-	732	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	-2	0	2	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTCTCTTACTGAAAAC	NA	False	NA	2	True	AATAAA	-22	NA	55420745	55397487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
ES_00019482	chr15	-	1225	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	0	-2	0	2	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTCTCTTACTGAAAAC	NA	False	NA	2	True	AATAAA	-22	NA	55421144	55397487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ES_00019483	chr15	-	308	3	FSM	ENSMUSG00000022370.14	ENSMUST00000107207.3	664	3	0	356	0	-356	multi-exon	FALSE	canonical	3	91	junction_1	441	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTATTATACCAAGTT	NA	False	NA	NA	False	NA	NA	NA	55420679	55406622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_55406781_55418715_55418840_55420653
ES_00019485	chr15	-	3905	7	NNC	ENSMUSG00000060429.13	novel	4919	7	NA	NA	114176	42242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.2916164657906	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAATAAGCAACCTG	NA	False	NA	NA	False	NA	NA	NA	55655530	55457541	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_55457577_55499790_55502824_55506050_55506242_55511252_55511450_55539699_55539840_55612583_55612792_55655429
ES_00019486	chr15	-	3056	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	0	119	0	-119	multi-exon	FALSE	canonical	3	365	junction_5	42.5977866628236	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGAGAATGTCTGAATT	NA	False	NA	NA	False	NA	NA	NA	57755844	57733016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ES_00019489	chr15	-	5202	5	FSM	ENSMUSG00000022361.15	ENSMUST00000110168.8	5212	5	6	4	6	-4	multi-exon	FALSE	canonical	1	2	junction_2	17.7816619020833	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCTTTTGAGTGATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	57939879	57910402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57912182_57915619_57918479_57927450_57927577_57932714_57932826_57939552
ES_00019490	chr15	-	5013	4	FSM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	44	-293	44	-9	multi-exon	FALSE	canonical	3	28	junction_2	5.18544972870135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGGGCTCTTTTGAGTG	NA	False	NA	NA	False	AATAAA	-9	NA	57939821	57910407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57912182_57915619_57918479_57932714_57932826_57939552
ES_00019493	chr15	-	5686	28	FSM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	0	-2	0	0	multi-exon	TRUE	canonical	3	283	junction_25	31.7407623492731	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTCTAGTTCTTGTGT	NA	False	NA	-9	True	AATAAA	-22	NA	57998478	57957439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
ES_00019499	chr15	-	1819	10	FSM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	38.5140666943045	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGAGTTATCCTTGA	NA	False	NA	-3	True	AATAAA	-16	NA	58805587	58771779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ES_00019500	chr15	-	837	11	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	26.3417918904542	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805562	58772822	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ES_00019501	chr15	-	915	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805576	58772822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ES_00019503	chr15	-	4988	14	NNC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	15.5323674264364	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGGTCTCCTTCAGAT	2729	False	NA	NA	False	AATAAA	-20	NA	58953854	58813081	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_58815980_58817165_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
ES_00019504	chr15	-	4943	14	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	8.88386610227084	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGGTCTCCTTCAGAT	2729	False	NA	NA	False	AATAAA	-20	NA	58953854	58813081	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
ES_00019506	chr15	-	5567	2	FSM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	0	-2	0	2	multi-exon	FALSE	canonical	3	40	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTCCTTTTTTTTTCTT	NA	False	NA	NA	False	AATACA	-16	NA	60696929	60690840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_60695841_60696362
ES_00019507	chr15	-	3802	12	FSM	ENSMUSG00000022378.15	ENSMUST00000063838.11	3797	12	0	-5	0	5	multi-exon	FALSE	canonical	3	62	junction_11	317.474070002523	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTTGTATATATATATT	NA	False	NA	1	True	NA	NA	NA	63932297	63800940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63932043
ES_00019508	chr15	-	1770	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	8739	False	NA	-4	True	AATAAA	-22	NA	63869818	63802790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
ES_00019509	chr15	-	2165	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	-269	0	-134	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932461	63802792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
ES_00019512	chr15	-	4540	30	FSM	ENSMUSG00000022377.17	ENSMUST00000110115.9	4535	30	0	-5	0	0	multi-exon	FALSE	canonical	3	31	junction_28	25.7623364351316	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTTCTGGTCACTCA	NA	False	NA	2	True	ATTAAA	-25	NA	64254768	63960384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
ES_00019513	chr15	-	4411	27	ISM	ENSMUSG00000022377.17	ENSMUST00000177035.8	3228	28	37074	-905	-139	-1	3prime_fragment	FALSE	canonical	3	36	junction_5	23.2403508003955	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAATGCTTGTTTCTGGT	NA	False	NA	-4	True	ATTAAA	-19	NA	64184661	63960390	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
ES_00019514	chr15	-	480	1	FSM	ENSMUSG00000092454.2	ENSMUST00000173338.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGAAGCGCTCTTGATG	NA	False	NA	NA	False	NA	NA	NA	65800782	65800302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_65800300_65800800
ES_00019515	chr15	-	2888	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	0	1	0	-1	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTGTCTTTTCCTCTC	NA	False	NA	-1	True	AATAAA	-17	NA	66841489	66801167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
ES_00019516	chr15	-	5710	9	FSM	ENSMUSG00000013846.11	ENSMUST00000229028.2	5732	9	22	0	22	0	multi-exon	FALSE	canonical	1	1	junction_4	1.93649167310371	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCGTGTTCGGAGTTCTG	NA	False	NA	NA	False	AATAAA	-21	NA	67048657	66974723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_66978680_66980057_66980178_66981454_66981501_66983080_66983261_66984279_66984477_66985355_66986207_67000401_67000457_67024891_67025020_67048480
ES_00019517	chr15	-	216	3	Intergenic	novelGene_1387	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCATTCTAAGCGACAACAA	NA	False	NA	NA	False	NA	NA	NA	67468031	67452258	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_67452276_67453885_67453904_67467850
ES_00019518	chr15	-	4459	16	NIC	ENSMUSG00000022335.18	novel	4388	16	NA	NA	0	50	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	5.94194132137525	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGCCTGTTCCTTGTCC	NA	False	NA	NA	False	AATAAA	-5	NA	68130705	67955562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084441_68084694_68096615_68096793_68130516
ES_00019519	chr15	-	4480	16	FSM	ENSMUSG00000022335.18	ENSMUST00000162054.9	4388	16	-42	-50	-42	50	multi-exon	FALSE	canonical	3	9	junction_13	6.94742158406028	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGCCTGTTCCTTGTCC	NA	False	NA	NA	False	AATAAA	-5	NA	68130747	67955562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084462_68084694_68096615_68096793_68130516
ES_00019521	chr15	-	858	3	ISM	ENSMUSG00000047921.18	ENSMUST00000023276.16	3301	22	370437	0	370437	0	3prime_fragment	FALSE	canonical	3	129	junction_2	23.5	950	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	False	NA	-1	True	AATAAA	-21	NA	72557222	72461468	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_72462012_72462464_72462689_72557131
ES_00019526	chr15	-	4486	32	FSM	ENSMUSG00000022607.19	ENSMUST00000110036.11	4417	32	-65	-4	24	4	multi-exon	FALSE	canonical	3	91	junction_30	29.7827373894676	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1612	False	NA	0	True	ATTAAA	-22	NA	73295105	73076946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
ES_00019527	chr15	-	4687	30	FSM	ENSMUSG00000022607.19	ENSMUST00000227569.2	4678	30	0	-9	0	9	multi-exon	FALSE	canonical	3	34	junction_28	48.8378130727746	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAACAAACAAACAAACAT	1752	False	NA	NA	False	NA	NA	NA	73294965	73086241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73266496_73266594_73294857
ES_00019530	chr15	-	761	1	FSM	ENSMUSG00000115602.2	ENSMUST00000228413.2	751	1	180	-190	180	190	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAACAAAGACCCCA	4858	False	NA	NA	False	NA	NA	NA	73279908	73279147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73279100_73279900
ES_00019534	chr15	-	4486	8	NIC	ENSMUSG00000079020.10	novel	4240	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_7	37.6183845631741	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACGCTGTGTTTATGTCC	NA	False	NA	-3	True	AATAAA	-27	NA	73517604	73452138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73453980_73456186_73456399_73457136_73457237_73457867_73458935_73459393_73459574_73461234_73461424_73477290_73477926_73517342
ES_00019535	chr15	-	2087	2	FSM	ENSMUSG00000045281.6	ENSMUST00000064166.5	2144	2	57	0	57	0	multi-exon	FALSE	canonical	2	16	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGGCCAACAGCCCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	73579297	73566452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73568412_73579169
ES_00019536	chr15	-	390	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAATGACTATT	NA	False	NA	NA	False	NA	NA	NA	73681745	73681355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73681400_73681700
ES_00019537	chr15	-	1566	1	FSM	ENSMUSG00000075609.4	ENSMUST00000100555.4	1278	1	-43	-245	-43	245	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAAAACAG	NA	False	NA	NA	False	AATAAA	-37	NA	73953403	73951837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73951800_73953400
ES_00019538	chr15	-	1317	1	FSM	ENSMUSG00000082585.4	ENSMUST00000120421.2	648	1	-137	-532	-137	532	mono-exon	FALSE	NA	NA	NA	NA	NA	1267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGGCTGAGAAAAAAAAAGA	NA	False	NA	NA	False	AATACA	-42	NA	73966319	73965002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73965000_73966300
ES_00019540	chr15	-	3230	3	FSM	ENSMUSG00000022602.15	ENSMUST00000110009.4	3054	3	-176	0	-176	0	multi-exon	FALSE	canonical	3	15	junction_2	19	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544595	74540931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74541843_74542028_74542166_74542413
ES_00019542	chr15	-	505	3	FSM	ENSMUSG00000022595.8	ENSMUST00000023260.5	513	3	0	8	0	-8	multi-exon	FALSE	canonical	2	7	junction_2	1.5	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGGTCTCCTGAGTCTC	NA	False	NA	NA	False	AATACA	-11	NA	74606178	74604103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74604389_74604815_74604936_74606078
ES_00019543	chr15	-	3719	4	FSM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	55	249	23	-249	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTTGGAGGCCTGTGCA	9995	False	NA	NA	False	NA	NA	NA	74624840	74619949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74623277_74623391_74623494_74623703_74623887_74624733
ES_00019547	chr15	-	910	4	FSM	ENSMUSG00000075602.11	ENSMUST00000186526.7	862	4	-26	-22	-26	0	multi-exon	FALSE	canonical	0	0	junction_3	38.2738669184195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGTTCTCCATTTTTCT	9585	False	NA	-3	True	AATAAA	-16	NA	74869803	74866725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869696
ES_00019550	chr15	-	889	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-341	392	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	32.5678778348646	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGTTTTTCTTTTGCT	1011	False	NA	1	True	AATAAA	-22	NA	75110958	75107053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110882
ES_00019551	chr15	-	1903	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550649	75528883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
ES_00019553	chr15	-	3363	12	FSM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	0	-1	0	1	multi-exon	FALSE	canonical	3	58	junction_8	44.618492997359	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCTGTCTTGACTACCA	NA	False	NA	0	True	AATAAA	-20	NA	75713764	75626277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713698
ES_00019554	chr15	-	1425	5	Intergenic	novelGene_1397	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_3	26.2916336502698	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGTCCCATCAGATCCT	NA	False	NA	NA	False	NA	NA	NA	75754355	75741182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_75741955_75743124_75743208_75744217_75744419_75748129_75748389_75754245
ES_00019555	chr15	-	1186	4	Intergenic	novelGene_1398	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	55	junction_3	10.1434160364686	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAGGGTCCCATCAG	NA	False	NA	NA	False	NA	NA	NA	75754380	75741187	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_75741955_75743124_75743208_75744217_75744419_75754245
ES_00019558	chr15	-	713	3	FSM	ENSMUSG00000022574.8	ENSMUST00000230259.2	741	3	28	0	28	0	multi-exon	FALSE	canonical	3	35	junction_1	2	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACACTGCCAGGGAGCAA	NA	False	NA	NA	False	NA	NA	NA	75764389	75763477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75763532_75763632_75763714_75763811
ES_00019559	chr15	-	2312	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	1468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGCTGCTCACCGACC	NA	False	NA	NA	False	NA	NA	NA	75781204	75766053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
ES_00019560	chr15	-	1624	7	FSM	ENSMUSG00000055762.17	ENSMUST00000109972.9	1624	7	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	1042.33482571048	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAACCACCTGCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	75781183	75766648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773105_75781093
ES_00019562	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
ES_00019563	chr15	-	975	8	FSM	ENSMUSG00000055762.17	ENSMUST00000089680.10	973	8	0	-2	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1574.61569007443	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781168	75767336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772980_75773102_75781093
ES_00019568	chr15	-	1348	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	-9	0	9	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGAGTTGTACTTT	NA	False	NA	-4	True	NA	NA	NA	75793409	75788316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
ES_00019569	chr15	-	1412	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	-7	0	7	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCCAGCCTTCTCCTC	8946	False	NA	-15	True	AATAAA	-29	NA	75801575	75796517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ES_00019570	chr15	-	1349	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	-14	0	7	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCCAGCCTTCTCCTC	8919	False	NA	-15	True	AATAAA	-29	NA	75801602	75796517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ES_00019571	chr15	-	1350	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	12	-7	12	7	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCCAGCCTTCTCCTC	8852	False	NA	-15	True	AATAAA	-29	NA	75801669	75796517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
ES_00019575	chr15	-	2137	1	FSM	ENSMUSG00000098176.3	ENSMUST00000182172.2	2584	1	460	-13	447	13	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTTTTTTTTAAACTT	NA	False	NA	NA	False	NA	NA	NA	75853844	75851707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75851700_75853800
ES_00019577	chr15	-	5472	37	NNC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	0	30510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.3077057501856	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAATGGTATGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	75941603	75888496	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75888536_75919013_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00019578	chr15	-	5553	38	NNC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	0	30510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107.011526314044	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAATGGTATGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	75941603	75888496	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75888536_75919013_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936674_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00019579	chr15	-	1795	11	NNC	ENSMUSG00000002524.18	novel	1825	11	NA	NA	0	53534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	435.809545558607	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAATGGTATGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	75949551	75888496	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75888536_75942040_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449
ES_00019580	chr15	-	5440	36	FSM	ENSMUSG00000022568.18	ENSMUST00000063747.12	5440	36	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_30	52.1302607094253	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941603	75919006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00019581	chr15	-	5599	38	FSM	ENSMUSG00000022568.18	ENSMUST00000002603.12	5599	38	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	107.737208348925	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941603	75919006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75919387_75919469_75919522_75919770_75919846_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00019582	chr15	-	5542	37	FSM	ENSMUSG00000022568.18	ENSMUST00000109946.9	5545	37	3	0	3	0	multi-exon	FALSE	canonical	2	7	junction_2	94.8852580296751	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941630	75919006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75919387_75919469_75919522_75919770_75919846_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00019583	chr15	-	1904	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	0	-23	0	23	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACCCAAGCTGGTTGTG	NA	False	NA	23	True	NA	NA	NA	75952762	75942007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ES_00019584	chr15	-	1821	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952761	75942038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ES_00019590	chr15	-	14993	32	NIC	ENSMUSG00000022565.16	novel	15001	32	NA	NA	7	-1	combination_of_known_junctions	TRUE	canonical	1	7	junction_8	13.5317870655085	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCTGGGTCTTGCCTTGT	1035	False	NA	-10	True	AATAAA	-15	NA	76079903	76055176	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_76062586_76062718_76066100_76067109_76067209_76067290_76067396_76067561_76067646_76067722_76068080_76068166_76068306_76069510_76069686_76069804_76069967_76070053_76070238_76070340_76070468_76070559_76070715_76070810_76070964_76071836_76071963_76072178_76072275_76072372_76072478_76072663_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078950_76079013_76079623
ES_00019591	chr15	-	14993	32	FSM	ENSMUSG00000022565.16	ENSMUST00000023226.13	15001	32	7	1	7	-1	multi-exon	FALSE	canonical	2	16	junction_31	11.8476278266861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCTGGGTCTTGCCTTGT	1035	False	NA	-10	True	AATAAA	-15	NA	76079903	76055176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76062586_76062718_76066100_76067109_76067209_76067290_76067396_76067561_76067646_76067722_76068080_76068166_76068306_76069510_76069690_76069808_76069967_76070053_76070238_76070340_76070468_76070559_76070715_76070810_76070964_76071836_76071963_76072178_76072275_76072372_76072478_76072663_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078950_76079013_76079623
ES_00019597	chr15	-	1734	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8113	False	NA	-3	True	ATTAAA	-16	NA	76235311	76231239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ES_00019598	chr15	-	1672	6	FSM	ENSMUSG00000022552.17	ENSMUST00000144816.9	1669	6	0	-3	0	2	multi-exon	FALSE	canonical	3	18	junction_5	53.2450936706848	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTTCTGTTCTTGGATG	8149	False	NA	-1	True	ATTAAA	-18	NA	76235275	76231237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234680
ES_00019599	chr15	-	819	5	FSM	ENSMUSG00000022552.17	ENSMUST00000152151.9	819	5	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	16.6188898546203	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTGCCTAGCCCTCATGT	8533	False	NA	NA	False	NA	NA	NA	76234891	76232048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ES_00019600	chr15	-	2491	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	-34	True	AATAAA	-20	NA	76361477	76337188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
ES_00019601	chr15	-	888	4	FSM	ENSMUSG00000022555.13	ENSMUST00000160294.8	885	4	0	-3	0	1	multi-exon	FALSE	canonical	3	223	junction_3	11.0855260988773	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAGGGGTTGTGGAGGCT	NA	False	NA	-4	True	AATAAA	-19	NA	76387380	76386213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018
ES_00019607	chr15	-	1883	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	0	-173	0	173	multi-exon	FALSE	canonical	3	128	junction_8	22.8988946239769	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTAAGTAATTTTTAGG	NA	False	NA	NA	False	NA	NA	NA	76422935	76419747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
ES_00019608	chr15	-	2192	8	FSM	ENSMUSG00000022559.9	ENSMUST00000230513.2	1953	8	-60	-179	-49	173	multi-exon	FALSE	canonical	3	133	junction_7	19.025224930956	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTAAGTAATTTTTAGG	NA	False	NA	NA	False	NA	NA	NA	76422995	76419747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
ES_00019610	chr15	-	447	4	FSM	ENSMUSG00000034022.9	ENSMUST00000229287.2	439	4	0	-8	0	0	multi-exon	FALSE	canonical	2	6	junction_3	285.294389865782	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTCATTGTGTTTA	NA	False	NA	1	True	TATAAA	-30	NA	76480898	76480002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76480133_76480208_76480348_76480419_76480550_76480850
ES_00019611	chr15	-	4416	37	FSM	ENSMUSG00000034022.9	ENSMUST00000230157.2	4410	37	0	-6	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.8724822532214	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTCATTGTGTTTA	NA	False	NA	1	True	TATAAA	-30	NA	76491711	76480002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76480108_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
ES_00019612	chr15	-	4521	37	FSM	ENSMUSG00000034022.9	ENSMUST00000071898.7	4518	37	0	-3	0	0	multi-exon	FALSE	canonical	3	484	junction_25	49.8187687746518	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTCATTGTGTTTA	NA	False	NA	1	True	TATAAA	-30	NA	76491791	76480002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
ES_00019614	chr15	-	710	7	FSM	ENSMUSG00000034022.9	ENSMUST00000229797.2	710	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	210.37222302914	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTCAAGGGTGGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	76487777	76486347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76486422_76486520_76486632_76486708_76486788_76486990_76487138_76487233_76487386_76487501_76487583_76487711
ES_00019615	chr15	-	609	3	FSM	ENSMUSG00000034022.9	ENSMUST00000229447.2	609	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGGTGGGGTGTTGGGGGG	NA	False	NA	NA	False	NA	NA	NA	76487800	76486946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76487386_76487501_76487583_76487711
ES_00019616	chr15	-	2762	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	0	-12	0	4	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTTCTTGTAGAGTTT	8130	False	NA	2	True	AATAAA	-25	NA	76501584	76496578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ES_00019618	chr15	-	926	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	0	-15	0	0	multi-exon	FALSE	canonical	3	892	junction_9	85.8889607589177	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGAGCCCCCGCCCTGT	9603	False	NA	-10	True	AATAAA	-32	NA	76510274	76506293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ES_00019619	chr15	-	956	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	-15	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGAGCCCCCGCCCTGT	9671	False	NA	-10	True	AATAAA	-32	NA	76510206	76506293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
ES_00019621	chr15	-	4215	26	NNC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_21	45.9053983753545	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCAGCTCTCTGCG	NA	False	NA	-1	True	AATAAA	-16	NA	76524105	76510437	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522638_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
ES_00019622	chr15	-	4235	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCAGCTCTCTGCG	NA	False	NA	-1	True	AATAAA	-16	NA	76524158	76510437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
ES_00019625	chr15	-	1854	4	FSM	ENSMUSG00000053929.18	ENSMUST00000176274.2	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	196.445638508186	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGTGTGTCTGCTT	NA	False	NA	-1	True	AATAAA	-24	NA	76541120	76531126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76531969_76532298_76532511_76533140_76533380_76540559
ES_00019626	chr15	-	1742	4	FSM	ENSMUSG00000053929.18	ENSMUST00000229524.2	1513	4	-229	0	-25	0	multi-exon	FALSE	canonical	3	120	junction_1	282.269768523344	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCTTTTCTGGCAG	NA	False	NA	-65	True	NA	NA	NA	76541145	76531190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76531896_76532298_76532511_76533140_76533380_76540559
ES_00019628	chr15	-	1117	3	FSM	ENSMUSG00000053929.18	ENSMUST00000177359.2	1110	3	0	-7	0	0	multi-exon	FALSE	canonical	3	19	junction_2	30	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76544317	76542332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76543066_76543418_76543640_76544154
ES_00019629	chr15	-	1326	3	FSM	ENSMUSG00000033837.6	ENSMUST00000037824.6	1365	3	39	0	39	0	multi-exon	FALSE	canonical	3	304	junction_2	19.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGACAGCTTTAAAACACCAG	NA	False	NA	NA	False	NA	NA	NA	76554109	76552424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76553341_76553428_76553534_76553804
ES_00019632	chr15	-	2187	2	FSM	ENSMUSG00000033707.10_ENSMUSG00000116138.2	ENSMUST00000230559.2	740	2	-443	-1004	-4	10	multi-exon	FALSE	canonical	3	37	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAATGATCATGTGACT	9321	False	NA	6	True	ATTAAA	-33	NA	76608028	76605654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76607184_76607370
ES_00019633	chr15	-	4587	12	FSM	ENSMUSG00000033697.17	ENSMUST00000239003.2	4587	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	14.9749101461177	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTGTGTTTCTTTCAG	8169	False	NA	-4	True	AATAAA	-17	NA	76702370	76608184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76614563_76614657_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ES_00019634	chr15	-	4520	11	FSM	ENSMUSG00000033697.17	ENSMUST00000239134.2	4494	11	-26	0	-26	0	multi-exon	FALSE	canonical	3	26	junction_5	15.2761251631426	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTGTGTTTCTTTCAG	8143	False	NA	-4	True	AATAAA	-17	NA	76702396	76608184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ES_00019635	chr15	-	5105	6	FSM	ENSMUSG00000033697.17	ENSMUST00000177011.2	4145	6	-45	-915	-4	915	multi-exon	FALSE	canonical	3	56	junction_1	12.3353151560874	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGTAGGAGCTCTCAAGAG	8165	False	NA	NA	False	NA	NA	NA	76702374	76616741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ES_00019638	chr15	-	542	3	FSM	ENSMUSG00000033697.17	ENSMUST00000176219.9	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	34	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGCCCATGTTTTAAAT	8233	False	NA	NA	False	AAGAAA	-1	NA	76702306	76642240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76642501_76649684_76649852_76702191
ES_00019639	chr15	-	4036	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTCTGTAGTGATGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	76755635	76735808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
ES_00019640	chr15	-	2204	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	23	-15	-13	15	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTTTCTAGAACCCATA	8508	False	NA	NA	False	ATTAAA	-39	NA	76809625	76794555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
ES_00019641	chr15	-	6508	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	0	-4814	0	4	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCGTTTTGGCTCCTTCTT	NA	False	NA	-3	True	AATAAA	-19	NA	77037954	76963185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
ES_00019642	chr15	-	7231	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-124	136	combination_of_known_junctions	FALSE	canonical	3	116	junction_12	32.8971860813506	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGGCAGCAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	77191328	76963053	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
ES_00019643	chr15	-	7192	13	NNC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-124	136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	63.47369315096	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGGCAGCAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	77191328	76963053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982283_76983437_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77190563
ES_00019644	chr15	-	6569	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_11	49.3316274559802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGGCGTTTTGGCTCCT	NA	False	NA	-7	True	AATAAA	-15	NA	77190805	76963189	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001265_77016916_77017142_77115586_77115638_77190563
ES_00019646	chr15	-	659	1	Genic_Genomic	ENSMUSG00000116284.2	novel	NA	NA	NA	NA	132	2	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCATGGTGTTTTATCC	3320	False	NA	NA	False	NA	NA	NA	77254350	77253691	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_-_77253700_77254400
ES_00019647	chr15	-	7393	42	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	0	83801	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	102.246817357443	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAAACATTTATCCCTT	NA	False	NA	NA	False	NA	NA	NA	77726305	77560985	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_77561017_77644787_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
ES_00019648	chr15	-	7406	42	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	0	83801	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.246817357443	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAAACATTTATCCCTT	NA	False	NA	NA	False	NA	NA	NA	77726305	77560985	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_77561032_77644789_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
ES_00019649	chr15	-	7548	41	FSM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	0	-115	0	115	multi-exon	FALSE	canonical	3	307	junction_27	78.3427565254121	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATCCTGGGCAGCAGC	NA	False	NA	NA	False	NA	NA	NA	77726375	77644671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
ES_00019653	chr15	-	1298	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	14	True	NA	-5	True	AATAAA	-19	NA	77813206	77799246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
ES_00019654	chr15	-	2049	3	FSM	ENSMUSG00000005354.17	ENSMUST00000109748.9	2049	3	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	38	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTACCTCTTGCTGTGAA	2753	False	NA	-7	True	AATAAA	-16	NA	77813168	77799409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77800058_77808742_77808867_77811891
ES_00019655	chr15	-	676	3	FSM	ENSMUSG00000005354.17	ENSMUST00000100486.6	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGGCTCACAACCAT	2724	False	NA	NA	False	NA	NA	NA	77813197	77810597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77810920_77811891_77812155_77813106
ES_00019656	chr15	-	4793	9	FSM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_8	9.62337648645214	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCTGGCATTTTGG	8659	False	NA	2	True	AATAAA	-23	NA	77840922	77824721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840766
ES_00019657	chr15	-	4852	9	FSM	ENSMUSG00000016552.14	ENSMUST00000117725.2	4347	9	-8	-497	0	0	multi-exon	FALSE	canonical	3	12	junction_8	16.6203000875435	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCTGGCATTTTGG	8698	False	NA	2	True	AATAAA	-23	NA	77840883	77824721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840668
ES_00019659	chr15	-	248	2	FSM	ENSMUSG00000016554.10	ENSMUST00000229737.2	248	2	0	0	0	0	multi-exon	FALSE	canonical	3	1670	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTCCAGAGAGTCGGCT	9380	False	NA	NA	False	NA	NA	NA	77848378	77847436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77847526_77848219
ES_00019660	chr15	-	706	7	FSM	ENSMUSG00000016554.10	ENSMUST00000230419.2	706	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	599.575521144381	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGGAGATGGACTTCC	2913	False	NA	NA	False	NA	NA	NA	77854845	77849171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
ES_00019663	chr15	-	1569	3	FSM	ENSMUSG00000016637.8	ENSMUST00000231069.2	1569	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	151.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAATGAGTAGCC	NA	False	NA	NA	False	ATTAAA	-3	NA	78051136	78048011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78048500_78049346_78049465_78050173
ES_00019665	chr15	-	1784	1	FSM	ENSMUSG00000068226.4	ENSMUST00000180449.2	441	1	-258	-1085	-258	1085	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTTTTAATGGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	78439306	78437522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78437500_78439300
ES_00019666	chr15	-	3013	7	FSM	ENSMUSG00000033220.8	ENSMUST00000043214.8	3038	7	0	25	0	-25	multi-exon	FALSE	canonical	3	13	junction_3	5.64702478203247	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTCCCCGATACTTT	NA	False	NA	NA	False	NA	NA	NA	78456983	78443391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
ES_00019667	chr15	-	369	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	25	0	25	0	multi-exon	FALSE	canonical	3	23	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTGTGGTCGGAGTAT	2878	False	NA	-3	True	NA	NA	NA	78465791	78458610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78458873_78465684
ES_00019668	chr15	-	1865	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657675	78640081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
ES_00019670	chr15	-	4773	21	FSM	ENSMUSG00000033170.15	ENSMUST00000164826.8	4726	21	-44	-3	-44	3	multi-exon	FALSE	canonical	3	39	junction_20	6.10634915477325	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGACCTTATGCTTGCT	NA	False	NA	-12	True	ATTAAA	-15	NA	78687286	78659334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78661031_78661664_78661778_78662158_78662275_78662397_78662557_78663594_78663689_78664441_78664512_78664676_78664921_78665272_78665385_78665674_78665835_78671555_78671680_78672045_78672075_78672921_78673038_78673930_78674057_78675240_78675433_78677085_78677212_78678052_78678209_78679408_78679601_78683295_78683622_78685832_78685971_78686580_78686833_78687054
ES_00019671	chr15	-	4053	22	NNC	ENSMUSG00000033170.15	novel	4726	21	NA	NA	103	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.3416960065244	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTGACCTTATGCTTGC	NA	False	NA	-13	True	ATTAAA	-14	NA	78687139	78659335	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_78660145_78660716_78661031_78661664_78661778_78662158_78662275_78662397_78662557_78663594_78663689_78664441_78664512_78664676_78664921_78665272_78665385_78665674_78665835_78671555_78671680_78672045_78672075_78672921_78673038_78673930_78674057_78675240_78675433_78677085_78677212_78678052_78678209_78679408_78679601_78683295_78683622_78685832_78685971_78686580_78686833_78687054
ES_00019672	chr15	-	1903	8	FSM	ENSMUSG00000033055.13	ENSMUST00000040676.11	1904	8	0	1	0	-1	multi-exon	FALSE	canonical	3	102	junction_6	6.03391773769796	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGTTTTTTGTGTTTTT	NA	False	NA	-1	True	NA	NA	NA	78947085	78937294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
ES_00019675	chr15	-	3375	16	FSM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	0	-10	0	10	multi-exon	FALSE	canonical	3	30	junction_8	51.9652020319581	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGTGCCATTGTGTGA	NA	False	NA	0	True	AATAAA	-26	NA	79212376	79170417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
ES_00019676	chr15	-	2973	16	FSM	ENSMUSG00000042632.18	ENSMUST00000047816.15	2963	16	0	-10	0	10	multi-exon	FALSE	canonical	0	0	junction_15	63.160817671155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGTGCCATTGTGTGA	NA	False	NA	0	True	AATAAA	-26	NA	79212428	79170417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
ES_00019678	chr15	-	2857	16	NIC	ENSMUSG00000042632.18	novel	2963	16	NA	NA	0	15	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	51.8533830461748	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCATTGTGTGAATGTG	NA	False	NA	5	True	AATAAA	-31	NA	79212428	79170412	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
ES_00019679	chr15	-	3022	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	0	15	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCATTGTGTGAATGTG	NA	False	NA	5	True	AATAAA	-31	NA	79212428	79170412	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
ES_00019681	chr15	-	3335	10	FSM	ENSMUSG00000009035.16	ENSMUST00000228002.2	3315	10	0	-20	0	0	multi-exon	FALSE	canonical	3	23	junction_1	128.214615603374	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGCCAGCGAGGTT	NA	False	NA	-3	True	AATATA	-34	NA	79287456	79244883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79247086_79247857_79247879_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
ES_00019682	chr15	-	2708	11	FSM	ENSMUSG00000022433.22	ENSMUST00000117786.9	2695	11	0	-13	0	13	multi-exon	FALSE	canonical	3	59	junction_10	149.550794046705	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTTGCTCTTGGGGT	8156	False	NA	9	True	AATAAA	-37	NA	79326200	79302042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323056_79326127
ES_00019683	chr15	-	1409	11	FSM	ENSMUSG00000022433.22	ENSMUST00000120859.9	1392	11	0	-17	0	0	multi-exon	FALSE	canonical	3	332	junction_10	81.5738315883225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	8153	False	NA	NA	False	NA	NA	NA	79326203	79303348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
ES_00019684	chr15	-	1457	9	NIC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	31	-2	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	246.747213763398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCACGTGTACCTCTCT	8460	False	NA	-3	True	ATTAAA	-16	NA	79339736	79307845	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
ES_00019690	chr15	-	4726	13	FSM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_12	13.0064086767511	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ES_00019691	chr15	-	3127	11	FSM	ENSMUSG00000055065.8	ENSMUST00000229431.2	2821	11	-243	-63	-61	63	multi-exon	FALSE	canonical	3	55	junction_10	13.6707717412003	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCATTCAAGTGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	79431003	79418798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ES_00019692	chr15	-	2219	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	AGTAAA	-16	NA	79489309	79445697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ES_00019693	chr15	-	3436	5	NNC	ENSMUSG00000022426.7	novel	3440	4	NA	NA	31	34981	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	55.8093854114162	1966	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGGCTCTTTTGGGAT	NA	False	NA	NA	False	NA	NA	NA	79572089	79523470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79523498_79558451_79560381_79561297_79561493_79561599_79561729_79570933
ES_00019694	chr15	-	3440	4	FSM	ENSMUSG00000022426.7	ENSMUST00000023061.7	3440	4	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	10.9848380355227	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAGTCTACTTGTCTGAT	NA	False	NA	-3	True	ATTAAA	-15	NA	79572120	79558451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79560381_79561297_79561493_79561599_79561729_79570933
ES_00019696	chr15	-	1531	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2513	-684	8	0	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	251	False	NA	NA	False	ATTAAA	-17	NA	79658660	79645653	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
ES_00019697	chr15	-	1477	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	0	-5	0	5	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTATTGAACTTT	243	False	NA	NA	False	ATTAAA	-22	NA	79658668	79645648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
ES_00019698	chr15	-	1154	6	NIC	ENSMUSG00000022420.17	novel	1011	5	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	53.7311827526623	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	251	False	NA	NA	False	ATTAAA	-17	NA	79658660	79645653	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79646251_79646627_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
ES_00019704	chr15	-	2905	7	FSM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	0	-6	0	6	multi-exon	FALSE	canonical	3	156	junction_1	127.989582909444	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816853	79800001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ES_00019705	chr15	-	3397	6	FSM	ENSMUSG00000053411.17	ENSMUST00000089293.11	3388	6	0	-9	0	6	multi-exon	FALSE	canonical	3	31	junction_2	177.465038810465	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816840	79800001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79802678_79802953_79803306_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ES_00019706	chr15	-	6069	4	FSM	ENSMUSG00000053411.17	ENSMUST00000176639.8	6057	4	0	-12	0	6	multi-exon	FALSE	canonical	3	216	junction_3	126.212343118871	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79816969	79800001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79805640_79807672_79807739_79814786_79814831_79816648
ES_00019707	chr15	-	2944	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	6	6	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79855313	79800001	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ES_00019709	chr15	-	2190	7	NNC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	221	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_6	4.63381292481928	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79897183	79880074	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897064
ES_00019711	chr15	-	2047	8	FSM	ENSMUSG00000060036.15	ENSMUST00000188025.7	1781	8	-263	-3	-263	0	multi-exon	FALSE	canonical	3	23824	junction_4	2825.56158044697	805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	4078	False	NA	-1	True	AATAAA	-17	NA	79967047	79961991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965233_79965815_79965985_79966590
ES_00019712	chr15	-	1881	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	0	-4	0	0	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
ES_00019713	chr15	-	1351	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	7919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3518	False	NA	-1	True	AATAAA	-17	NA	79967607	79961991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ES_00019714	chr15	-	824	5	FSM	ENSMUSG00000060036.15	ENSMUST00000187832.7	824	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_2	12495.7520081826	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAGATGATTGATGTC	3591	False	NA	NA	False	NA	NA	NA	79967534	79964617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
ES_00019717	chr15	-	833	5	NNC	ENSMUSG00000051518.9	novel	525	5	NA	NA	0	17976	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.469605449021	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAGTTCTGGAAGCC	NA	False	NA	NA	False	NA	NA	NA	80148485	80126839	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_80126870_80144819_80145332_80145497_80145596_80148183_80148319_80148427
ES_00019718	chr15	-	870	5	NNC	ENSMUSG00000051518.9	novel	838	4	NA	NA	0	17976	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.469605449021	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAGTTCTGGAAGCC	NA	False	NA	NA	False	NA	NA	NA	80148516	80126839	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_80126874_80144817_80145332_80145497_80145596_80148183_80148319_80148427
ES_00019719	chr15	-	837	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	0	1	0	-1	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCAAGTGTGTGTGTGT	NA	False	NA	-6	True	AATAAA	-24	NA	80148516	80144816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
ES_00019720	chr15	-	525	5	FSM	ENSMUSG00000051518.9	ENSMUST00000230189.2	525	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	375.465377897883	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAGCTAGACTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	80148447	80145195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_80145332_80145497_80145596_80147892_80148029_80148183_80148319_80148427
ES_00019721	chr15	-	465	3	FSM	ENSMUSG00000051518.9	ENSMUST00000229962.2	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	818	junction_1	17	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAGAAGAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	80148485	80145266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_80145332_80145497_80145596_80148183
ES_00019723	chr15	-	4366	14	FSM	ENSMUSG00000042292.19	ENSMUST00000239114.2	4366	14	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	7.74138192332869	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTGTATTTGATCCAT	NA	False	NA	-3	True	AATAAA	-21	NA	81074958	80896481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_80898004_80899549_80899611_80899959_80900113_80900431_80901428_80902151_80902321_80902414_80902681_80904365_80904516_80904953_80905130_80906597_80906760_80907742_80907819_80910862_80910919_80929489_80929556_81001591_81001854_81074707
ES_00019724	chr15	-	1716	10	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	0	19613	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.949673587668	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCAATGTCTCACAGACC	6887	False	NA	NA	False	NA	NA	NA	81244974	81183498	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81183531_81203112_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ES_00019725	chr15	-	1709	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	3	30	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	106.957862614209	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGTGTGTGGTGGTTT	6890	False	NA	20	True	AAAACA	-33	NA	81244971	81203081	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213365_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ES_00019726	chr15	-	1754	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	0	-30	0	30	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGTGTGTGGTGGTTT	6848	False	NA	20	True	AAAACA	-33	NA	81245013	81203081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ES_00019728	chr15	-	3111	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-218	0	intron_retention	FALSE	canonical	2	36	junction_3	732.640723514648	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81284013	81247869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81249780_81250547_81250691_81253594_81253640_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ES_00019734	chr15	-	355	1	FSM	ENSMUSG00000091198.3	ENSMUST00000172270.3	465	1	80	30	80	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGGCCCCTGTGAAGGC	8647	False	NA	NA	False	NA	NA	NA	81383666	81383311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81383300_81383700
ES_00019736	chr15	-	619	1	FSM	ENSMUSG00000092325.3	ENSMUST00000172604.3	619	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAGTGTTTAATAAGATA	NA	False	NA	NA	False	AATGAA	-26	NA	81559079	81558460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81558500_81559100
ES_00019737	chr15	-	1104	3	FSM	ENSMUSG00000063765.13	ENSMUST00000173898.2	1095	3	0	-9	0	-7	multi-exon	FALSE	canonical	3	12	junction_2	12.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAATACCTAGCATTAG	8075	False	NA	NA	False	NA	NA	NA	81578408	81570372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81570604_81576308_81576508_81577734
ES_00019738	chr15	-	2986	17	FSM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	0	-2	0	2	multi-exon	FALSE	canonical	3	7	junction_16	270.05335121046	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGCTTCTTTCATCAAAA	NA	False	NA	-2	True	AATAAA	-27	NA	81614102	81588446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
ES_00019739	chr15	-	3040	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	0	-7	0	2	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGCTTCTTTCATCAAAA	NA	False	NA	-2	True	AATAAA	-27	NA	81614204	81588446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ES_00019741	chr15	-	4010	2	FSM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	143	-2	-19	2	multi-exon	FALSE	canonical	3	45	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGCCTACTTGTTTGTG	NA	False	NA	-6	True	ATTAAA	-19	NA	81742543	81732470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81736074_81742136
ES_00019743	chr15	-	2530	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	12	0	12	0	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTGTCATCAAAAATAAA	440	False	NA	NA	False	AATAAA	-17	NA	81810429	81799229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
ES_00019744	chr15	-	1290	6	FSM	ENSMUSG00000022476.9	ENSMUST00000230765.2	1290	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	105.973581613532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTGGGAAAGTAGAGAG	697	False	NA	NA	False	NA	NA	NA	81810172	81800770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809428
ES_00019746	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845131	81835308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ES_00019748	chr15	-	612	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	False	NA	-4	True	NA	NA	NA	81845034	81839743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ES_00019750	chr15	-	2945	6	FSM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	0	-11	0	11	multi-exon	FALSE	canonical	3	162	junction_5	9.30806102257608	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTGAATCTTGGTAGG	NA	False	NA	2	True	AATAAA	-27	NA	81900364	81876712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
ES_00019751	chr15	-	2115	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	19	-57	0	57	multi-exon	FALSE	canonical	3	3045	junction_2	110	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGGTCAGAAAACATTGG	4925	False	NA	NA	False	NA	NA	NA	81931780	81924668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81926570_81928097_81928219_81931687
ES_00019752	chr15	-	206	1	Intergenic	novelGene_1440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAACACTTTTTTAAATTA	1810	False	NA	NA	False	NA	NA	NA	82027785	82027579	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_82027600_82027800
ES_00019754	chr15	-	2588	4	FSM	ENSMUSG00000096883.3	ENSMUST00000179269.3	2588	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	2.62466929133727	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCTGAGATCCGC	NA	False	NA	NA	False	GATAAA	-24	NA	82097016	82090368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82091749_82091951_82092099_82092663_82092798_82096089
ES_00019756	chr15	-	950	7	NNC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-14	13650	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.743089124399	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAACAAAACTGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	82128963	82104329	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82104365_82118280_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ES_00019757	chr15	-	1921	3	FSM	ENSMUSG00000068105.12	ENSMUST00000089161.10	1924	3	0	3	0	-1	multi-exon	FALSE	canonical	3	7	junction_1	3	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTCTGTGCCTGGGTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	82108554	82105946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82107478_82107919_82108124_82108368
ES_00019758	chr15	-	1105	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	0	-316	0	16	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAATCCAGGCAGTGGTG	NA	False	NA	NA	False	NA	NA	NA	82128928	82117963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ES_00019759	chr15	-	1221	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	0	-19	0	19	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCCAGGCAGTGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	82128949	82117960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ES_00019762	chr15	-	223	2	Antisense	novelGene_ENSMUSG00000022456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAAAGTTGACTCAG	1233	False	NA	NA	False	NA	NA	NA	82165695	82137900	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_82137931_82165502
ES_00019763	chr15	-	1741	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-2	17	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGTGGGGGTGGGGGCT	1361	False	NA	17	True	NA	NA	NA	82223010	82213715	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
ES_00019764	chr15	-	1930	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	0	-17	0	17	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGTGGGGGTGGGGGCT	1344	False	NA	17	True	NA	NA	NA	82223027	82213715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ES_00019765	chr15	-	1021	7	FSM	ENSMUSG00000022453.9	ENSMUST00000230380.2	1020	7	0	-1	0	1	multi-exon	FALSE	canonical	3	267	junction_3	11.7106314470608	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATTCTTTTCCTACTTC	1388	False	NA	NA	False	NA	NA	NA	82222983	82218816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ES_00019770	chr15	-	383	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	0	-1	0	1	multi-exon	FALSE	canonical	3	112	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGCACTGGTGAACCC	6280	False	NA	-36	True	AATAAA	-27	NA	82238455	82234363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_82234573_82238281
ES_00019771	chr15	-	1547	2	NNC	ENSMUSG00000041852.16	novel	7417	5	NA	NA	88645	-11	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	0	854	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTTTTCATTTACTCT	NA	False	NA	-16	True	AATAAA	-17	NA	82695367	82692647	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82693989_82695161
ES_00019774	chr15	-	4351	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	29	-17	-21	17	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAATAAATGTATTTGAGG	NA	False	NA	NA	False	NA	NA	NA	83006973	82997616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ES_00019775	chr15	-	2297	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	425	at_least_one_novel_splicesite	FALSE	non_canonical	3	832	junction_4	68.5907710814729	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTCAGTCATCTGGTAC	NA	False	NA	NA	False	NA	NA	NA	83006952	82999623	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83000330_83000355_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ES_00019776	chr15	-	3180	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	3	10	at_least_one_novel_splicesite	FALSE	non_canonical	3	86	junction_7	194.039783291984	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTTTTTTCATGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	83033582	83010166	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83011512_83011550_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
ES_00019778	chr15	-	3215	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	0	10	at_least_one_novel_splicesite	TRUE	non_canonical	3	351	junction_1	103.822260273966	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTTTTTTCATGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	83033530	83010166	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83011512_83011550_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
ES_00019781	chr15	-	2429	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	0	-7	0	7	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTTCTCTGGGGATCACG	NA	False	NA	7	True	AGTAAA	-25	NA	83056793	83037687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
ES_00019782	chr15	-	1488	2	FSM	ENSMUSG00000116338.2	ENSMUST00000229317.2	1684	2	196	0	196	0	multi-exon	FALSE	canonical	1	1	junction_1	0	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTTGCCTTCGGTCATG	NA	False	NA	NA	False	NA	NA	NA	83060450	83057396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83058764_83060329
ES_00019783	chr15	-	2124	3	NNC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	13706	3	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	45.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTCATGGTCACATCG	5777	False	NA	-5	True	AATAAA	-19	NA	83122224	83110919	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83112796_83114714_83114859_83122120
ES_00019784	chr15	-	2167	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	-73	-2	-73	2	multi-exon	FALSE	canonical	3	57	junction_2	20.5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCCTCATGGTCACATC	2150	False	NA	-6	True	AATAAA	-18	NA	83136048	83110920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83112796_83114714_83114859_83135900
ES_00019785	chr15	-	1974	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	34	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTTTTTTTTTT	2266	False	NA	NA	False	NA	NA	NA	83135932	83111080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83112796_83114714_83114859_83135817
ES_00019787	chr15	-	1189	3	FSM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	0	-3	0	2	multi-exon	FALSE	canonical	2	5	junction_2	31.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTGTGTTGTCATT	NA	False	NA	-24	True	AATATA	-18	NA	83189542	83183937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83184904_83187303_83187426_83189441
ES_00019788	chr15	-	2621	16	FSM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	0	-2	0	2	multi-exon	FALSE	canonical	3	20	junction_9	11.3927852413515	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTGTGTTGTCATT	3525	False	NA	-24	True	AATATA	-18	NA	83234448	83183937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ES_00019789	chr15	-	2635	16	NNC	ENSMUSG00000054277.9	novel	2619	16	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_9	10.2515039547051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTGTGTTGTCATT	3514	False	NA	-24	True	AATATA	-18	NA	83234459	83183937	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208355_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ES_00019790	chr15	-	6103	3	NIC	ENSMUSG00000075511.10	novel	4969	3	NA	NA	10	236	intron_retention	FALSE	canonical	3	28	junction_1	13	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACACTTTGTTGTTTTAC	260	False	NA	NA	False	AAGAAA	-35	NA	83251468	83237811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_83243152_83249229_83249715_83251190
ES_00019793	chr15	-	2286	4	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	12	-1	intron_retention	FALSE	canonical	3	20	junction_1	14.2672897060218	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCCAGCTTAAGTCTC	262	False	NA	NA	False	AATAAA	-19	NA	83251466	83241735	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_83243152_83248020_83248130_83249229_83249715_83251190
ES_00019796	chr15	-	3745	11	FSM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	0	-559	0	48	multi-exon	FALSE	canonical	3	62	junction_10	172.10531659423	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTCTTTGTGTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	83317016	83259759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
ES_00019797	chr15	-	3703	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	0	-10	0	10	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTCAGCAGAAGCAGA	7107	False	NA	NA	False	AGTAAA	-29	NA	83348807	83259797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
ES_00019798	chr15	-	640	5	FSM	ENSMUSG00000016664.17	ENSMUST00000229337.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	313.978502448814	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGGCTTCAAGGAGACCA	7161	False	NA	NA	False	NA	NA	NA	83348753	83274702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83274860_83276701_83276859_83286067_83286201_83337067_83337167_83348659
ES_00019799	chr15	-	438	1	FSM	ENSMUSG00000049414.8	ENSMUST00000079706.7	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTTGAATGAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	83290264	83289826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83289800_83290300
ES_00019802	chr15	-	2186	13	NNC	ENSMUSG00000022442.17	novel	2060	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_12	26.269305070536	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGACTTTATCTTATTA	NA	False	NA	NA	False	NA	NA	NA	83395082	83367971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83393853_83393994_83394934
ES_00019803	chr15	-	1925	4	FSM	ENSMUSG00000048755.10	ENSMUST00000061882.10	1917	4	0	-8	0	8	multi-exon	FALSE	canonical	3	138	junction_2	37.1423687391577	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTCTGTGTGAGGAGT	8051	False	NA	8	True	AATAAA	-31	NA	83439936	83430989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83432144_83433318_83433537_83436734_83436823_83439471
ES_00019804	chr15	-	740	3	FSM	ENSMUSG00000048755.10	ENSMUST00000230851.2	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	98.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACTGACAGGACATCGGG	8421	False	NA	NA	False	NA	NA	NA	83439566	83431586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83432144_83436734_83436823_83439471
ES_00019807	chr15	-	4462	1	FSM	ENSMUSG00000055745.5	ENSMUST00000069476.5	4426	1	-18	-18	-18	18	mono-exon	FALSE	NA	NA	NA	NA	NA	334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTCTCTGGGTTTTTG	5009	False	NA	1	True	ATTAAA	-32	NA	84442042	84437580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_84437600_84442000
ES_00019808	chr15	-	8012	2	FSM	ENSMUSG00000100967.2	ENSMUST00000189185.2	8038	2	29	-3	29	3	multi-exon	FALSE	canonical	3	6	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGTTAATCTTGAATAA	NA	False	NA	NA	False	NA	NA	NA	84804210	84794635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_84798533_84800095
ES_00019810	chr15	-	6826	10	FSM	ENSMUSG00000036046.15	ENSMUST00000047144.13	6845	10	0	19	0	-19	multi-exon	FALSE	canonical	3	237	junction_4	21.5893206338712	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAGCCAATTCTAGAAAC	NA	False	NA	55	True	AATAAA	-18	NA	84872201	84828155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_84833480_84833751_84833911_84834812_84834976_84837330_84837523_84838102_84838244_84839590_84839693_84839846_84839925_84840006_84840130_84844670_84844823_84871809
ES_00019814	chr15	-	997	5	FSM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	2	-2	2	2	multi-exon	FALSE	canonical	3	77	junction_4	106.509389257473	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTGAGTCACTGTT	8088	False	NA	2	True	ATTAAA	-17	NA	85695895	85691170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695839
ES_00019816	chr15	-	1579	4	FSM	ENSMUSG00000064284.13	ENSMUST00000125947.8	706	4	-601	-272	5	-3	multi-exon	FALSE	canonical	3	301	junction_1	22.0151463012778	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGGTGGTTTGAGTCA	8091	False	NA	-3	True	ATTAAA	-12	NA	85695892	85691175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102
ES_00019818	chr15	-	11305	35	FSM	ENSMUSG00000016028.12	ENSMUST00000016172.10	11305	35	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	10.8831478247056	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGCTGGGTGGT	NA	False	NA	-5	True	AATAAA	-21	NA	85918404	85783129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_85784907_85785137_85785400_85785639_85785874_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ES_00019819	chr15	-	11335	35	NIC	ENSMUSG00000016028.12	novel	11305	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	11.3216575993027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGCTGGGTGGT	NA	False	NA	-5	True	AATAAA	-21	NA	85918404	85783129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_85784940_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ES_00019821	chr15	-	4457	13	FSM	ENSMUSG00000035891.17	ENSMUST00000044332.16	4518	13	73	-12	73	11	multi-exon	FALSE	canonical	3	13	junction_10	4.62105687767059	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCCTCATTTACAAGTTC	NA	False	NA	-2	True	AATAAA	-29	NA	86070269	86023317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86039174_86039321_86040788_86040853_86043294_86043421_86049168_86049292_86050022_86050137_86069707
ES_00019822	chr15	-	2865	8	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7503	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	244.623158748141	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7639	False	NA	-5	True	NA	NA	NA	88592570	88571236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88592440
ES_00019823	chr15	-	4746	13	NIC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	187.247756254173	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	NA	False	NA	-5	True	NA	NA	NA	88618423	88571236	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ES_00019824	chr15	-	5231	13	FSM	ENSMUSG00000022387.18	ENSMUST00000109381.9	5152	13	-79	0	-79	0	multi-exon	FALSE	canonical	0	0	junction_12	202.393524819568	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	NA	False	NA	-5	True	NA	NA	NA	88618515	88571236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ES_00019825	chr15	-	2134	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	-4	0	4	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGTTGTTGGTCACTT	9244	False	NA	4	True	AATAAA	-21	NA	88703521	88689442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ES_00019834	chr15	-	2902	18	FSM	ENSMUSG00000062906.13	ENSMUST00000134111.8	2895	18	1	-8	1	4	multi-exon	FALSE	canonical	3	26	junction_3	4.63326321588593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTCTCCGTTACTGAG	NA	False	NA	1	True	AATAAA	-21	NA	89012881	89007505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89012222_89012387_89012523_89012592
ES_00019835	chr15	-	1895	12	FSM	ENSMUSG00000022610.11	ENSMUST00000088827.8	1808	12	-87	0	-5	0	multi-exon	FALSE	canonical	2	7	junction_5	1.87634249459548	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTTGTGTGGCCCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	89024911	89014786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330_89024461_89024550
ES_00019838	chr15	-	2466	12	FSM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	0	-5	0	4	multi-exon	FALSE	canonical	2	7	junction_8	5.74096487412616	596	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTGGATCCCATTGCTT	NA	False	NA	-8	True	AATAAA	-33	NA	89033831	89026684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
ES_00019839	chr15	-	834	3	FSM	ENSMUSG00000036606.18	ENSMUST00000143014.3	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	186.5	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGACTGGGTTTCTCCT	NA	False	NA	-5	True	AATACA	-19	NA	89040775	89039751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89040381_89040458_89040589_89040700
ES_00019841	chr15	-	6497	38	FSM	ENSMUSG00000036606.18	ENSMUST00000109331.9	6497	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_37	73.775209877053	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGACTGGGTTTCTCCT	9143	False	NA	-5	True	AATACA	-19	NA	89064991	89039751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89064867
ES_00019842	chr15	-	912	2	FSM	ENSMUSG00000036606.18	ENSMUST00000229966.2	860	2	347	-399	0	0	multi-exon	FALSE	canonical	3	409	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGACTGGGTTTCTCCT	NA	False	NA	-5	True	AATACA	-19	NA	89040775	89039751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89040589_89040700
ES_00019845	chr15	-	2293	19	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	2	216	intron_retention	FALSE	canonical	3	70	junction_7	13.724358808023	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGGCAGCTGCCAGGGC	NA	False	NA	NA	False	NA	NA	NA	89080645	89068798	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
ES_00019847	chr15	-	2682	18	FSM	ENSMUSG00000015377.11	ENSMUST00000229755.2	2677	18	0	-5	0	0	multi-exon	FALSE	canonical	3	17	junction_17	28.0313714517704	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTCCCTGACTATTGG	NA	False	NA	1	True	AGTAAA	-19	NA	89080647	89069014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89069313_89069394_89069470_89069564_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89077137_89077322_89080421
ES_00019850	chr15	-	317	2	FSM	ENSMUSG00000036529.18	ENSMUST00000176277.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCCATGTTTACAGCCCC	7970	False	NA	NA	False	NA	NA	NA	89173162	89172759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89172929_89173014
ES_00019851	chr15	-	924	5	FSM	ENSMUSG00000036529.18	ENSMUST00000155146.2	924	5	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_3	12.6293309403151	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGACCAGGAGGACGAG	9634	False	NA	NA	False	NA	NA	NA	89186833	89184757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89184868_89184975_89185155_89186045_89186581_89186654_89186729_89186807
ES_00019855	chr15	-	3145	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	-14	-225	-14	225	multi-exon	TRUE	canonical	0	0	junction_12	66.7675469479281	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGGATGGAAGAAAGAAGG	NA	False	NA	NA	False	TATAAA	-40	NA	89239876	89234981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
ES_00019857	chr15	-	3262	13	FSM	ENSMUSG00000022614.9	ENSMUST00000231067.2	3262	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	69.3126471544375	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGGTTTTTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	89239815	89235341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766
ES_00019861	chr15	-	204	1	FSM	ENSMUSG00000047394.10	ENSMUST00000227854.2	1076	1	154	718	13	-218	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGCACCCTGGGGCCCGG	NA	False	NA	NA	False	NA	NA	NA	89263052	89262848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89262800_89263100
ES_00019863	chr15	-	2069	9	FSM	ENSMUSG00000022617.16	ENSMUST00000170334.8	2063	9	0	-6	0	6	multi-exon	FALSE	canonical	3	290	junction_3	35.8355619462009	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGACATTCTGTTGA	1219	False	NA	NA	False	AATAAA	-36	NA	89314063	89310556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251
ES_00019864	chr15	-	1898	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	-469	-13	0	6	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGACATTCTGTTGA	1171	False	NA	NA	False	AATAAA	-36	NA	89314111	89310556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
ES_00019865	chr15	-	1720	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	0	-13	0	6	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGACATTCTGTTGA	1180	False	NA	NA	False	AATAAA	-36	NA	89314102	89310556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ES_00019866	chr15	-	2652	8	ISM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	1316	18	4	-18	3prime_fragment	FALSE	canonical	3	62	junction_5	9.89743318610787	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTTGTCTACAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	89360312	89356696	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710
ES_00019867	chr15	-	3484	9	FSM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	3	5	3	-5	multi-exon	FALSE	canonical	3	8	junction_8	23.5358768691545	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAATCTTTTAGAAGCA	NA	False	NA	NA	False	NA	NA	NA	89361625	89356683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710_89360859_89361352
ES_00019870	chr15	-	528	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	-91	-59	-91	59	mono-exon	FALSE	NA	NA	NA	NA	NA	2823	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAACTATGGCAAGGGAA	NA	False	NA	NA	False	AATAAA	-41	NA	90648950	90648422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_90648400_90649000
ES_00019873	chr15	-	6523	7	FSM	ENSMUSG00000036197.17	ENSMUST00000230063.2	4427	7	29	-2125	1	13	multi-exon	FALSE	canonical	3	41	junction_3	8.55699843532896	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTACCAGGC	NA	False	NA	3	True	AATAAA	-26	NA	93173031	93137609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_93143011_93145739_93145913_93146239_93146364_93152181_93152434_93156945_93157072_93159627_93159800_93172756
ES_00019874	chr15	-	2293	4	FSM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	-231	-386	-104	386	multi-exon	FALSE	canonical	3	129	junction_3	11.0453610171873	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCAGATACCTCATTCTT	NA	False	NA	-9	True	AGTAAA	-16	NA	93234920	93181772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_93183504_93184290_93184444_93234220_93234347_93234637
ES_00019875	chr15	-	1873	5	FSM	ENSMUSG00000022634.10	ENSMUST00000133736.2	1870	5	0	-3	0	0	multi-exon	TRUE	canonical	3	44	junction_2	48.2875501552937	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGCATTTTGTTTACAA	NA	False	NA	-1	True	AATAAA	-20	NA	93234816	93182158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_93183504_93184290_93184444_93215419_93215490_93234220_93234347_93234637
ES_00019884	chr15	-	202	1	Intergenic	novelGene_1463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGATATAGAGAGAAGT	NA	False	NA	NA	False	AAGAAA	-2	NA	93433515	93433313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_93433300_93433500
ES_00019885	chr15	-	972	1	FSM	ENSMUSG00000115993.2	ENSMUST00000231103.2	490	1	-360	-122	-360	122	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGGCATGCTTGTATT	NA	False	NA	NA	False	NA	NA	NA	93577890	93576918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_93576900_93577900
ES_00019886	chr15	-	2860	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	-18	-2	-18	2	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGTCTCTATGTTTTAT	NA	False	NA	-1	True	AATAAA	-29	NA	94441446	94420566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
ES_00019887	chr15	-	3036	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	-11	0	11	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCTTTCTGGTACATT	NA	False	NA	-1	True	AATAAA	-23	NA	94487760	94475820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ES_00019888	chr15	-	966	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-49	425	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	12.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACCAACGAGCAA	NA	False	NA	46	True	AGTAAA	-3	NA	95530758	95522193	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_95522899_95530158_95530347_95530685
ES_00019889	chr15	-	919	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-44	368	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCTCTCCAAGTTTTAT	NA	False	NA	-11	True	ATTAAA	-16	NA	95530753	95522250	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_95522899_95530158_95530347_95530670
ES_00019892	chr15	-	254	2	NNC	ENSMUSG00000033228.9	novel	2599	2	NA	NA	-3654	3563	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	522	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATCCATGTTACCCTT	NA	False	NA	NA	False	NA	NA	NA	96348107	96306016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_96306048_96347884
ES_00019893	chr15	-	4522	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGACTGTATAGTATTC	NA	False	NA	1	True	NA	NA	NA	96316573	96309576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
ES_00019894	chr15	-	7763	15	NIC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	76.3346552480375	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGACTACTGGTGACTGT	NA	False	NA	-8	True	NA	NA	NA	96358722	96309585	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ES_00019895	chr15	-	5766	15	FSM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	59.5770809240313	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTGTTAATTTGTTG	NA	False	NA	-20	True	NA	NA	NA	96358724	96311536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ES_00019896	chr15	-	1679	10	NNC	ENSMUSG00000033228.9	novel	796	8	NA	NA	0	-1814	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	90.598013223249	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAGACTGAATTATTT	NA	False	NA	NA	False	AATAAA	-14	NA	96358681	96320494	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_96321226_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ES_00019897	chr15	-	2545	2	FSM	ENSMUSG00000033228.9	ENSMUST00000227133.2	2599	2	0	54	0	-54	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTCCTAATACAAGATTA	NA	False	NA	NA	False	NA	NA	NA	96358681	96347674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96350021_96358482
ES_00019898	chr15	-	6966	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540131	96469298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
ES_00019899	chr15	-	7637	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	-371	0	-371	0	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96541165	96469298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
ES_00019900	chr15	-	4688	17	NNC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	0	52871	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.5465540997927	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGCCATAACACTGGCCT	NA	False	NA	NA	False	NA	NA	NA	96597611	96532401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_96532430_96585272_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
ES_00019902	chr15	-	3723	1	FSM	ENSMUSG00000023169.16	ENSMUST00000229253.2	3722	1	2	-3	2	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	96540278	96536555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96536600_96540300
ES_00019904	chr15	-	3945	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	-13	0	10	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCGTGAGTTATTTG	NA	False	NA	1	True	AATAAA	-29	NA	96953837	96892690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ES_00019905	chr15	-	407	2	Intergenic	novelGene_1468	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTCTAGAATTTGTC	4112	False	NA	1	True	AATACA	-25	NA	97027101	97026296	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_97026566_97026963
ES_00019907	chr15	-	233	2	Intergenic	novelGene_1472	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACATAAGTATTTTTTT	1455	False	NA	NA	False	NA	NA	NA	97029758	97029114	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_97029265_97029675
ES_00019909	chr15	-	1830	5	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-28	945	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	335.890607192282	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTGCTTGCTTGCT	NA	False	NA	-1	True	NA	NA	NA	97065153	97057868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_97059277_97059835_97059964_97063982_97064057_97064383_97064508_97065057
ES_00019910	chr15	-	781	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065123	97058813	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ES_00019911	chr15	-	655	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	244.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065125	97058813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97059277_97064383_97064508_97065057
ES_00019912	chr15	-	510	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCCGCTTTCCTCCCG	NA	False	NA	NA	False	NA	NA	NA	97065124	97059069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
ES_00019914	chr15	-	210	1	FSM	ENSMUSG00000116291.2	ENSMUST00000229443.2	623	1	-45	458	-45	-458	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGGGGAAATTTGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97200900	97200690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97200700_97200900
ES_00019919	chr15	-	4213	24	FSM	ENSMUSG00000022475.20	ENSMUST00000088402.12	4223	24	10	0	10	0	multi-exon	TRUE	canonical	2	7	junction_19	5.55841976156414	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTATTTGCTTTAAA	2000	False	NA	-17	True	NA	NA	NA	97729638	97690561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97729239
ES_00019922	chr15	-	6817	19	FSM	ENSMUSG00000033075.18	ENSMUST00000180657.2	3806	19	-22	-2989	-22	0	multi-exon	FALSE	canonical	3	73	junction_18	49.2407790452959	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTGGACTCAATACTAT	6439	False	NA	2	True	AATAAA	-36	NA	97991154	97936624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
ES_00019924	chr15	-	6332	19	NNC	ENSMUSG00000033075.18	novel	6575	18	NA	NA	-4927	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_18	61.1035601395565	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTGGACTCAATACTAT	8151	False	NA	2	True	AATAAA	-36	NA	97996552	97936624	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97995703_97995839_97996468
ES_00019925	chr15	-	6710	18	NIC	ENSMUSG00000033075.18	novel	6575	18	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_17	37.6096321314865	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTGGACTCAATACTAT	6468	False	NA	2	True	AATAAA	-36	NA	97991125	97936624	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
ES_00019928	chr15	-	2168	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	-47	-1072	0	-5	multi-exon	FALSE	canonical	3	32	junction_3	39.6848697728604	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATTTGGCCACTTCCAG	NA	False	NA	-5	True	AATAAA	-16	NA	98043587	98032522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
ES_00019929	chr15	-	3600	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	0	-4	0	4	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGGAATCATGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	98432145	98415534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ES_00019930	chr15	-	2324	10	FSM	ENSMUSG00000022992.18	ENSMUST00000116400.4	2324	10	0	0	0	0	multi-exon	FALSE	canonical	1	217	junction_2	304.537941847467	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	-9	True	ATTAAA	-26	NA	98432125	98416688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ES_00019931	chr15	-	2573	11	NNC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	41	junction_3	398.463749919613	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	-9	True	ATTAAA	-26	NA	98432145	98416688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_98417429_98418198_98418307_98419516_98419644_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ES_00019932	chr15	-	2362	9	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	1	91	junction_6	351.279247003008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	-9	True	ATTAAA	-26	NA	98432176	98416688	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98431782
ES_00019934	chr15	-	6606	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	91	-4522	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTTTGTATGTTCCGT	NA	False	NA	NA	False	AATAAA	-22	NA	98465426	98436569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ES_00019936	chr15	-	3207	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-10	-10	-5	10	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGAGCTCCATTCTCCTCT	6989	False	NA	-4	True	AATAAA	-25	NA	98560780	98543004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
ES_00019937	chr15	-	321	3	FSM	ENSMUSG00000003360.16	ENSMUST00000162384.2	321	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGGGACCGGAGTAAGAA	7030	False	NA	NA	False	NA	NA	NA	98560739	98554559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98554594_98556110_98556317_98560658
ES_00019938	chr15	-	1659	5	FSM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	0	544	0	-544	multi-exon	FALSE	canonical	3	35	junction_3	4.54835134966506	1198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTTTTATGGCGATCA	NA	False	NA	NA	False	AATATA	-40	NA	98575342	98567629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98568724_98570391_98570527_98571726_98571837_98574367_98574456_98575110
ES_00019940	chr15	-	692	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	46	-4	0	0	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98626033	98622246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
ES_00019941	chr15	-	1314	4	FSM	ENSMUSG00000003355.8	ENSMUST00000230743.2	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_2	35.1220095603249	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98626033	98622246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98622484_98624364_98625180_98625563_98625630_98625837
ES_00019942	chr15	-	4585	5	FSM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	-19	0	-16	0	multi-exon	FALSE	canonical	3	612	junction_3	18.4712614620659	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTTTCCTTTTCCTCCA	1780	False	NA	NA	False	NA	NA	NA	98661111	98634514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ES_00019943	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9349	False	NA	-4	True	ATTAAA	-22	NA	98729402	98710677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
ES_00019946	chr15	-	11340	21	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	19996	4	-1950	-1	3prime_fragment	FALSE	canonical	3	7	junction_3	23.171696096747	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTGCCTCTGTCCCATG	6018	False	NA	NA	False	NA	NA	NA	98749068	98729553	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_98732474_98732596_98732706_98732788_98732863_98733062_98733349_98734955_98735087_98735175_98735313_98737157_98738299_98738441_98738570_98738642_98738776_98739290_98739422_98739619_98739796_98739908_98739985_98740623_98740784_98740939_98741108_98741232_98741374_98741475_98744428_98744523_98744757_98744854_98744922_98745018_98745104_98745238_98745363_98747100
ES_00019948	chr15	-	8437	34	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	-22	19758	-1	3287	5prime_fragment	FALSE	canonical	2	10	junction_2	66.8600363656042	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACACCTTCTTCCATGGA	9470	False	NA	NA	False	NA	NA	NA	98769086	98749307	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_98749413_98749487_98749671_98749771_98751587_98751670_98751722_98751913_98751988_98752063_98752306_98752411_98752497_98752594_98752733_98752905_98753017_98753190_98753257_98753415_98753563_98753644_98753780_98753958_98754064_98754150_98754271_98754487_98754710_98755268_98755317_98755405_98755516_98755602_98755768_98755922_98756105_98757390_98757496_98758514_98758626_98758931_98759046_98759482_98760565_98760656_98762091_98762226_98762373_98762529_98762688_98762814_98762930_98763008_98763175_98763381_98763545_98763669_98763780_98763876_98764101_98764256_98764384_98764552_98764639_98768894
ES_00019952	chr15	-	383	1	FSM	ENSMUSG00000023000.6	ENSMUST00000229775.2	694	1	20	291	20	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCGCGAGTGGGCCAGCG	7735	False	NA	NA	False	NA	NA	NA	98796367	98795984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98796000_98796400
ES_00019953	chr15	-	2307	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	0	-3	0	3	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCCCTGTGTCTATCTG	NA	False	NA	0	True	AATAAA	-38	NA	98816112	98801794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ES_00019954	chr15	-	547	6	FSM	ENSMUSG00000022999.16	ENSMUST00000135051.3	547	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	9.52050418832952	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCTTCTCCAAACTGGG	2148	False	NA	NA	False	NA	NA	NA	98807341	98805473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98805492_98805774_98805853_98806400_98806641_98806729_98806803_98807083_98807149_98807268
ES_00019955	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	31	False	NA	NA	False	AGTAAA	-18	NA	98832446	98829305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
ES_00019956	chr15	-	1675	5	Fusion	ENSMUSG00000023004.9_ENSMUSG00000072235.7	novel	1803	4	NA	NA	88	0	multi-exon	TRUE	canonical	0	0	junction_1	1841.43551339709	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	NA	False	NA	NA	False	AGTAAA	-18	NA	98851496	98829305	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr15_-_98829517_98847968_98848896_98849068_98849218_98849349_98849573_98851331
ES_00019957	chr15	-	1775	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	28	0	28	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851556	98847717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ES_00019961	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	-8	True	AATAAA	-12	NA	99149826	99140706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ES_00019964	chr15	-	4441	27	FSM	ENSMUSG00000023008.19	ENSMUST00000088233.13	4423	27	-15	-3	-15	3	multi-exon	FALSE	canonical	3	33	junction_13	7.49447528272084	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCACCAAGCTGTCTT	NA	False	NA	-14	True	CATAAA	-20	NA	99268378	99215102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99216254_99216798_99216899_99217011_99217136_99217442_99217536_99217865_99217968_99218233_99218395_99218916_99219047_99219135_99219217_99219314_99219384_99219511_99219747_99220075_99220279_99220483_99220609_99220692_99220762_99221200_99221481_99222621_99222724_99223121_99223272_99223523_99223635_99223734_99223810_99225395_99225490_99225701_99225779_99225938_99226048_99227160_99227314_99229867_99229952_99232734_99232812_99233568_99233650_99235510_99235595_99268057
ES_00019969	chr15	-	1276	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	0	True	ATTAAA	-19	NA	99372611	99367959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99368961_99372336
ES_00019971	chr15	-	2933	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	99549537	99518377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
ES_00019976	chr15	-	252	1	FSM	ENSMUSG00000115938.2	ENSMUST00000230504.2	252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGCCCCTGATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	99604694	99604442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99604400_99604700
ES_00019977	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670482	99633472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ES_00019980	chr15	-	214	2	Antisense	novelGene_ENSMUSG00000090500.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3463	False	NA	NA	False	NA	NA	NA	99720332	99719875	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_99720036_99720278
ES_00019982	chr15	-	2689	2	FSM	ENSMUSG00000023022.15	ENSMUST00000171450.2	2680	2	0	-9	0	9	multi-exon	FALSE	canonical	3	1109	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAACAAAAA	7278	False	NA	NA	False	NA	NA	NA	99773297	99739099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99741705_99773213
ES_00019983	chr15	-	2890	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	12	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.8380244062904	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCTAGGGGTGCGACT	NA	False	NA	NA	False	AATAAA	-24	NA	100320924	100285776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_100286319_100286443_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ES_00019984	chr15	-	3018	17	FSM	ENSMUSG00000023030.17	ENSMUST00000023774.12	3025	17	9	-2	9	2	multi-exon	FALSE	canonical	1	67	junction_1	39.2515923243886	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCTAGGGGTGCGACT	NA	False	NA	NA	False	AATAAA	-24	NA	100320927	100285776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ES_00019985	chr15	-	4415	16	FSM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	0	0	0	0	multi-exon	FALSE	canonical	1	68	junction_8	31.7016648704063	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGACACACTTTAAGT	NA	False	NA	80	True	AATAAA	-19	NA	100320883	100290443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ES_00019986	chr15	-	4164	5	FSM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	211	0	211	0	multi-exon	FALSE	canonical	3	12	junction_4	9.28372231381357	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGGGTTCTTTATCTT	NA	False	NA	2	True	ATTAAA	-17	NA	100393158	100377450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100380582_100382330_100382628_100385825_100386086_100387315_100387548_100392914
ES_00019987	chr15	-	3260	16	FSM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	39	3	12	-3	multi-exon	TRUE	canonical	3	68	junction_1	18.9415475139235	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTCTAATTTCTTTTGG	NA	False	NA	47	True	ATTAAA	-15	NA	100449850	100400630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
ES_00019988	chr15	-	3191	16	NNC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	24	-8	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	27.8291613639761	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGAGAGTTTTTGGTTCT	NA	False	NA	-7	True	AATAAA	-14	NA	100449838	100400684	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_100402322_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
ES_00019989	chr15	-	1903	14	FSM	ENSMUSG00000009733.10	ENSMUST00000229581.2	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	28.5781395330696	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAATCTCATTGTCTTGT	NA	False	NA	NA	False	ATTAAA	-40	NA	100449668	100407412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100407556_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
ES_00019990	chr15	-	1621	15	NNC	ENSMUSG00000009733.10	novel	1903	14	NA	NA	24	-12	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	37.4882974937459	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTTATGCTTGAAAATC	NA	False	NA	NA	False	ATTAAA	-28	NA	100449838	100407424	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_100407556_100409575_100409719_100410101_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
ES_00019991	chr15	-	3690	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	-47	11	-47	-11	multi-exon	FALSE	canonical	3	66	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTTCGTACTTCTC	8459	False	NA	-14	True	AATAAA	-7	NA	100478159	100473212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100476500_100477756
ES_00019993	chr15	-	1155	4	FSM	ENSMUSG00000053559.14	ENSMUST00000066068.7	1135	4	0	-20	0	20	multi-exon	FALSE	canonical	3	310	junction_3	209.183067086119	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTACATCATTTTCTC	NA	False	NA	3	True	ACTAAA	-21	NA	100534736	100519199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534439
ES_00019994	chr15	-	880	4	FSM	ENSMUSG00000053559.14	ENSMUST00000230280.2	880	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	291.611994875992	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCATTTTCAAGAACT	NA	False	NA	-7	True	ATTAAA	-14	NA	100534572	100519242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100519840_100520509_100520591_100534067_100534137_100534439
ES_00019996	chr15	-	1947	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	non_canonical	1	10	junction_1	41.9606269599971	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTTGCCCTGAACAGC	NA	False	NA	-1	True	AATAAA	-21	NA	100567386	100538959	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_100539166_100539204_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ES_00019998	chr15	-	1797	10	FSM	ENSMUSG00000098112.9	ENSMUST00000238935.2	1671	10	-67	-59	-19	59	multi-exon	FALSE	canonical	3	18	junction_1	41.3682648093117	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAC	NA	False	NA	NA	False	NA	NA	NA	100567453	100542460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100543418_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ES_00020000	chr15	-	1082	6	ISM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	2560	2	3	-1	3prime_fragment	FALSE	canonical	2	9	junction_4	10.6695829346793	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTGCTTGCATTTATA	8445	False	NA	0	True	AATAAA	-18	NA	100583242	100572303	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014
ES_00020008	chr15	-	2493	18	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-24	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	39.6618928436936	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTATGTTTTAAAGCT	6777	False	NA	NA	False	AATAAA	-19	NA	102112183	102085431	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102110878_102111010_102111571_102111696_102112130
ES_00020009	chr15	-	2276	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	28.5420547418873	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	6294	False	NA	NA	False	AATAAA	-17	NA	102112666	102085433	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112573
ES_00020014	chr15	-	2655	15	FSM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	28	0	-8	0	multi-exon	FALSE	canonical	3	29	junction_13	6.6719791758105	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	NA	False	NA	-1	True	AATAAA	-14	NA	102140351	102124429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832_102136037_102140285
ES_00020021	chr15	-	3542	12	ISM	ENSMUSG00000023050.10	ENSMUST00000171565.8	4318	16	4656	1376	4656	-1127	intron_retention	FALSE	canonical	3	54	junction_7	10.3994596172387	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACAGCACTGAATTGGAC	NA	False	NA	NA	False	NA	NA	NA	102414479	102408586	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904
ES_00020026	chr15	-	7087	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184485.8	2523	12	372	-4936	0	0	multi-exon	TRUE	canonical	3	29	junction_11	8.85605736578731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATGTTTGGTGCTTCC	NA	False	NA	-1	True	ATTAAA	-16	NA	102533502	102437070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533473
ES_00020027	chr15	-	7147	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184616.8	7147	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	10.1696355688543	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATGTTTGGTGCTTCC	NA	False	NA	-1	True	ATTAAA	-16	NA	102533885	102437070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533796
ES_00020032	chr15	-	2360	3	FSM	ENSMUSG00000062683.12	ENSMUST00000187160.2	635	3	0	-1725	0	0	multi-exon	FALSE	canonical	3	4743	junction_1	34	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	7285	False	NA	NA	False	GGGGCT	-44	NA	102576178	102571448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102573683_102574197_102574291_102576145
ES_00020033	chr15	-	334	3	FSM	ENSMUSG00000062683.12	ENSMUST00000186952.2	753	3	419	0	419	0	multi-exon	FALSE	canonical	2	115	junction_2	2348	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGAGTTGAAGCGACCA	3095	False	NA	NA	False	NA	NA	NA	102580368	102574235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102574291_102576145_102576215_102580158
ES_00020035	chr15	-	2946	14	FSM	ENSMUSG00000023055.11	ENSMUST00000171838.2	2968	14	25	-3	25	3	multi-exon	FALSE	canonical	3	88	junction_13	14.4115338424578	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACCCTGTCTGTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	102630541	102616016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
ES_00020036	chr15	-	3214	2	FSM	ENSMUSG00000036061.11	ENSMUST00000064067.9	3281	2	84	-17	84	0	multi-exon	FALSE	canonical	3	107	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTTTGCAAATTACT	NA	False	NA	-1	True	NA	NA	NA	103066345	103061716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_103064629_103066043
ES_00020039	chr15	-	8918	6	FSM	ENSMUSG00000009575.15	ENSMUST00000122182.2	1146	6	0	-7772	0	61	multi-exon	FALSE	canonical	3	10	junction_5	207.473757376686	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCAGTAGTCATACATTT	NA	False	NA	61	True	TATAAA	-27	NA	103123732	103099909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103123694
ES_00020041	chr15	-	237	2	Intergenic	novelGene_1493	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	547	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTACTGTTTTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	103139916	103136585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_103136620_103139713
ES_00020043	chr15	-	741	3	FSM	ENSMUSG00000058794.13	ENSMUST00000134193.8	774	3	33	0	33	0	multi-exon	TRUE	canonical	2	8	junction_2	4	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTAGAGTCATCCTCCG	6491	False	NA	NA	False	NA	NA	NA	103161546	103157381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_103157876_103159355_103159526_103161469
ES_00020047	chr15	-	210	2	Intergenic	novelGene_1495	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	740	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCCAAGGGACCCTCCCT	NA	False	NA	NA	False	AAAAAG	-5	NA	103281472	103270660	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_103270817_103281418
ES_00020049	chr15	-	799	9	FSM	ENSMUSG00000022487.15	ENSMUST00000153930.8	799	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	29.634228520412	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAACTGTCTGTGACTT	8483	False	NA	-24	True	NA	NA	NA	103338776	103310909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603
ES_00020053	chr15	-	1448	1	FSM	ENSMUSG00000115819.2	ENSMUST00000228186.2	1425	1	-26	3	-26	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATTGCTCTAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	103496821	103495373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_103495400_103496800
ES_00020054	chr15	+	348	1	Intergenic	novelGene_1324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGCAGCTTTTGACTATTT	NA	False	NA	NA	False	NA	NA	NA	4589029	4589377	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_4589000_4589400
ES_00020055	chr15	+	202	1	Intergenic	novelGene_1325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGGAAAATATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	5132675	5132877	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_5132700_5132900
ES_00020056	chr15	+	216	1	Intergenic	novelGene_1327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGCAAGGAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6348337	6348553	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_6348300_6348600
ES_00020057	chr15	+	391	1	Intergenic	novelGene_1336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGGATCTTTTTAAAGAT	2439	False	NA	NA	False	NA	NA	NA	8834766	8835157	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8834800_8835200
ES_00020058	chr15	+	972	1	Intergenic	novelGene_1338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGGGGCAATCCGCCTA	NA	False	NA	NA	False	NA	NA	NA	8850737	8851709	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8850700_8851700
ES_00020059	chr15	+	538	1	Intergenic	novelGene_1339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTTATTGTTGCGAC	NA	False	NA	NA	False	NA	NA	NA	8851710	8852248	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8851700_8852200
ES_00020060	chr15	+	7232	1	Intergenic	novelGene_1340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	436	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGACCCAGGGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	9219242	9226474	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_9219200_9226500
ES_00020061	chr15	+	254	1	Intergenic	novelGene_1341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTAATCCAAGCAAAAAT	NA	False	NA	NA	False	NA	NA	NA	9229752	9230006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_9229800_9230000
ES_00020062	chr15	+	208	1	Intergenic	novelGene_1343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTGAAAGGACCCTGATA	9934	False	NA	NA	False	NA	NA	NA	12189661	12189869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_12189700_12189900
ES_00020064	chr15	+	207	1	Intergenic	novelGene_1344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1765	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	16198719	16198926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_16198700_16198900
ES_00020065	chr15	+	255	1	Intergenic	novelGene_1349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATGATCAGACTATTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	22713370	22713625	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_22713400_22713600
ES_00020068	chr15	+	235	1	Intergenic	novelGene_1351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTCTTTTAAAGGTGCA	NA	False	NA	NA	False	NA	NA	NA	25771187	25771422	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_25771200_25771400
ES_00020069	chr15	+	271	1	Intergenic	novelGene_1352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAACTAGATCATCTGTG	NA	False	NA	NA	False	NA	NA	NA	27276598	27276869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_27276600_27276900
ES_00020071	chr15	+	209	1	Intergenic	novelGene_1354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCATGGGAGGGGGGTG	NA	False	NA	NA	False	AAAAAG	-2	NA	28035183	28035392	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_28035200_28035400
ES_00020072	chr15	+	2297	1	Intergenic	novelGene_1355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAGAAAGAAAGAAAAGAA	143	False	NA	NA	False	NA	NA	NA	33221528	33223825	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_33221500_33223800
ES_00020074	chr15	+	225	1	Intergenic	novelGene_1358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGTGTTTTATCACAG	NA	False	NA	NA	False	NA	NA	NA	35281515	35281740	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_35281500_35281700
ES_00020075	chr15	+	1103	1	Intergenic	novelGene_1362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACTTGAAAGAGATGAAT	1602	False	NA	NA	False	NA	NA	NA	37073231	37074334	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_37073200_37074300
ES_00020076	chr15	+	209	1	Intergenic	novelGene_1363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTTTCTGCTGTCATC	NA	False	NA	NA	False	NA	NA	NA	37105959	37106168	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_37106000_37106200
ES_00020081	chr15	+	394	1	Intergenic	novelGene_1366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGACAGATATCCCAAAC	NA	False	NA	NA	False	NA	NA	NA	39481457	39481851	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_39481500_39481900
ES_00020083	chr15	+	229	1	Intergenic	novelGene_1367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	611	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACATACATGTCTTGCCT	NA	False	NA	NA	False	TTTAAA	-12	NA	41810471	41810700	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_41810500_41810700
ES_00020084	chr15	+	564	1	Intergenic	novelGene_1370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAACCATACAAAGACC	NA	False	NA	NA	False	AATAAA	-31	NA	43835274	43835838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_43835300_43835800
ES_00020086	chr15	+	215	1	Intergenic	novelGene_1372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	848	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCACCCTGCATTTAAAA	9124	False	NA	35	True	NA	NA	NA	46333720	46333935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_46333700_46333900
ES_00020088	chr15	+	304	1	Intergenic	novelGene_1374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAATAAGCCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	51757745	51758049	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_51757700_51758000
ES_00020089	chr15	+	229	1	Intergenic	novelGene_1375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGCAGAGAGGTTACAC	NA	False	NA	NA	False	NA	NA	NA	51861541	51861770	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_51861500_51861800
ES_00020090	chr15	+	209	1	Intergenic	novelGene_1376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGGCATTTGTGCATCC	NA	False	NA	NA	False	NA	NA	NA	52985798	52986007	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_52985800_52986000
ES_00020091	chr15	+	214	1	Intergenic	novelGene_1377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAGAAAGTCATAAAACAG	NA	False	NA	NA	False	NA	NA	NA	53106366	53106580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_53106400_53106600
ES_00020092	chr15	+	206	1	Intergenic	novelGene_1378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTAGTGAGTTTTAAGGA	NA	False	NA	NA	False	NA	NA	NA	54788059	54788265	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_54788100_54788300
ES_00020094	chr15	+	227	1	Intergenic	novelGene_1381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATAAGGAAAATGATATGA	NA	False	NA	NA	False	NA	NA	NA	56577534	56577761	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_56577500_56577800
ES_00020095	chr15	+	210	1	Intergenic	novelGene_1382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTATATAACAGCCAA	6499	False	NA	NA	False	NA	NA	NA	57899253	57899463	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_57899300_57899500
ES_00020097	chr15	+	222	1	Intergenic	novelGene_1383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATTATATACTTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	58637286	58637508	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_58637300_58637500
ES_00020099	chr15	+	731	1	Intergenic	novelGene_1384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTCTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	61925350	61926081	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_61925400_61926100
ES_00020100	chr15	+	223	1	Intergenic	novelGene_1385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAAAAAGGCTCCTTAC	NA	False	NA	NA	False	NA	NA	NA	63077387	63077610	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_63077400_63077600
ES_00020101	chr15	+	209	1	Intergenic	novelGene_1386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGTAGTTTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	63374811	63375020	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_63374800_63375000
ES_00020103	chr15	+	569	1	Intergenic	novelGene_1390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	570	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTATATGTGATAATTAT	NA	False	NA	NA	False	AATATA	-6	NA	72089909	72090478	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_72089900_72090500
ES_00020104	chr15	+	212	1	Intergenic	novelGene_1392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATAAAAGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	72725071	72725283	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_72725100_72725300
ES_00020105	chr15	+	205	1	Intergenic	novelGene_1393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTGTTTTTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	73322661	73322866	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_73322700_73322900
ES_00020106	chr15	+	229	1	Intergenic	novelGene_1399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCTCCTTTCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	75745673	75745902	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_75745700_75745900
ES_00020107	chr15	+	228	1	Intergenic	novelGene_1403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCATTAAGTTTCACT	NA	False	NA	NA	False	NA	NA	NA	76592073	76592301	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_76592100_76592300
ES_00020109	chr15	+	232	1	Intergenic	novelGene_1411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCATCAAAACGCTTACC	NA	False	NA	NA	False	TTTAAA	-1	NA	78706087	78706319	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_78706100_78706300
ES_00020110	chr15	+	201	1	Intergenic	novelGene_1412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCAGTGGTGGTA	NA	False	NA	NA	False	NA	NA	NA	78722543	78722744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_78722500_78722700
ES_00020113	chr15	+	449	1	Intergenic	novelGene_1418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCAGAGGTCTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	79405980	79406429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79406000_79406400
ES_00020114	chr15	+	218	1	Intergenic	novelGene_1420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTATTGTGTTTTACT	NA	False	NA	NA	False	ATTAAA	-17	NA	79491105	79491323	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79491100_79491300
ES_00020115	chr15	+	231	1	Intergenic	novelGene_1421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAAAGGCAGTGCCCA	5194	False	NA	NA	False	NA	NA	NA	79552077	79552308	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79552100_79552300
ES_00020117	chr15	+	223	1	Intergenic	novelGene_1428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGTGGAACACACCTATA	NA	False	NA	NA	False	AAAAAG	-21	NA	80319092	80319315	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_80319100_80319300
ES_00020120	chr15	+	231	1	Intergenic	novelGene_1434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTTTGTTTTTCGAGA	NA	False	NA	NA	False	NA	NA	NA	81078493	81078724	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_81078500_81078700
ES_00020126	chr15	+	201	1	Intergenic	novelGene_1447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCCCAGTTCTCACAGCT	340	False	NA	NA	False	NA	NA	NA	84413010	84413211	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_84413000_84413200
ES_00020127	chr15	+	232	1	Intergenic	novelGene_1448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTTTAGCTGCTAATAA	NA	False	NA	NA	False	NA	NA	NA	84938643	84938875	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_84938600_84938900
ES_00020128	chr15	+	226	1	Intergenic	novelGene_1450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	435	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTGTTTTTTAGATTCA	8214	False	NA	NA	False	NA	NA	NA	85662912	85663138	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_85662900_85663100
ES_00020129	chr15	+	277	1	Intergenic	novelGene_1452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTCTTTATAGCCCTGG	3576	False	NA	NA	False	NA	NA	NA	86078376	86078653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_86078400_86078700
ES_00020130	chr15	+	497	1	Intergenic	novelGene_1453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCGAACGCTGGGTTA	4176	False	NA	NA	False	NA	NA	NA	86078976	86079473	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_86079000_86079500
ES_00020132	chr15	+	211	1	Intergenic	novelGene_1456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	441	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTTTTGAAGCACTTCT	NA	False	NA	NA	False	NA	NA	NA	88678885	88679096	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_88678900_88679100
ES_00020134	chr15	+	646	1	Intergenic	novelGene_1459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAGAAGATACCTCAGAT	NA	False	NA	NA	False	AAGAAA	-25	NA	89650950	89651596	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_89651000_89651600
ES_00020135	chr15	+	226	1	Intergenic	novelGene_1461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAGACTCTTAATGGAG	NA	False	NA	NA	False	NA	NA	NA	92297789	92298015	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_92297800_92298000
ES_00020137	chr15	+	408	1	Intergenic	novelGene_1465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	352	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAATACAAGCATG	NA	False	NA	NA	False	AAAAAG	-26	NA	93576482	93576890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_93576500_93576900
ES_00020139	chr15	+	207	1	Intergenic	novelGene_1474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAAGTAGGGCACGGTAG	NA	False	NA	NA	False	NA	NA	NA	97325578	97325785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_97325600_97325800
ES_00020141	chr15	+	232	1	Intergenic	novelGene_1477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCACCAGCCCCGGGTA	NA	False	NA	NA	False	NA	NA	NA	98566641	98566873	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_98566600_98566900
ES_00020142	chr15	+	210	1	Intergenic	novelGene_1481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGATCTGCCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	98901267	98901477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_98901300_98901500
ES_00020143	chr15	+	228	1	Intergenic	novelGene_1482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATTTTGGTGTTTACCAT	NA	False	NA	NA	False	NA	NA	NA	99181213	99181441	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_99181200_99181400
ES_00020145	chr15	+	218	1	Intergenic	novelGene_1483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGATCCCTGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	99344335	99344553	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_99344300_99344600
ES_00020146	chr15	+	203	1	Intergenic	novelGene_1484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTATTATGTTTCATAA	NA	False	NA	NA	False	AAAAAG	-2	NA	99804606	99804809	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_99804600_99804800
ES_00020148	chr15	+	227	1	Intergenic	novelGene_1485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATGTTGCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	99896444	99896671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_99896400_99896700
ES_00020150	chr15	+	213	1	Intergenic	novelGene_1490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTCTTTTAATAAATCA	NA	False	NA	NA	False	NA	NA	NA	102513074	102513287	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_102513100_102513300
ES_00020151	chr15	+	201	1	Intergenic	novelGene_1491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAGAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	102809567	102809768	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_102809600_102809800
ES_00020152	chr15	+	744	1	Intergenic	novelGene_1492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCAAGGGGCCCTGGGGA	NA	False	NA	NA	False	NA	NA	NA	102839314	102840058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_102839300_102840100
ES_00020153	chr15	+	891	1	Intergenic	novelGene_1496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGGGTTGGCAGCGGCC	NA	False	NA	NA	False	GGGGCT	-7	NA	103353811	103354702	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_103353800_103354700
ES_00020155	chr15	+	447	1	Intergenic	novelGene_1497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACACAGGGGGATGGGT	NA	False	NA	NA	False	AATATA	-32	NA	103526271	103526718	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_103526300_103526700
ES_00020156	chr15	+	536	1	Intergenic	novelGene_1498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTTCTACTAACTCTG	NA	False	NA	NA	False	NA	NA	NA	103527145	103527681	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_103527100_103527700
ES_00020157	chr15	+	612	4	NNC	ENSMUSG00000041841.9	novel	556	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	6996.0273171438	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2248	False	NA	36	True	AATAAA	-17	NA	5146126	5148159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_5146409_5146768_5146903_5147100_5147186_5148048
ES_00020158	chr15	+	410	4	FSM	ENSMUSG00000041841.9	ENSMUST00000226758.2	410	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	9929.13252337115	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTCAATCAGTCATAAAA	2552	False	NA	-4	True	NA	NA	NA	5146430	5148119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5146549_5146768_5146905_5147100_5147186_5148048
ES_00020159	chr15	+	9621	19	FSM	ENSMUSG00000054263.13	ENSMUST00000171588.2	9655	19	34	0	34	0	multi-exon	FALSE	canonical	3	17	junction_14	6.77413381096719	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTTGGACATTTATTG	NA	False	NA	NA	False	AATAAA	-25	NA	7183867	7226970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7215046_7215215_7216346_7216509_7217555_7217650_7219595_7219675_7220026
ES_00020161	chr15	+	291	1	FSM	ENSMUSG00002076238.1	ENSMUST00020183062.1	80	1	3	-214	3	214	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATCTAGACTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	8004811	8005102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_8004800_8005100
ES_00020162	chr15	+	204	2	Intergenic	novelGene_1330	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTCTTATTTTTAACTC	NA	False	NA	NA	False	NA	NA	NA	8099238	8155782	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8099262_8155601
ES_00020163	chr15	+	10628	54	NIC	ENSMUSG00000039801.8	novel	10469	53	NA	NA	-81	0	combination_of_known_junctions	TRUE	canonical	2	15	junction_2	12.9124444267968	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198508	8300642	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8254822_8254901_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ES_00020164	chr15	+	10469	53	FSM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_2	13.020182330866	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198589	8300642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ES_00020166	chr15	+	220	1	Intergenic	novelGene_1333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1016	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCCATCTCACCAGCCC	2036	False	NA	NA	False	NA	NA	NA	8227300	8227520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8227300_8227500
ES_00020168	chr15	+	218	1	Intergenic	novelGene_1335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTTAATTTTTTAACATA	NA	False	NA	NA	False	NA	NA	NA	8761106	8761324	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8761100_8761300
ES_00020171	chr15	+	617	2	FSM	ENSMUSG00000115240.2	ENSMUST00000227557.2	751	2	131	3	-12	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	654	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTAAATGTTCTTTCAT	NA	False	NA	NA	False	ATTAAA	-14	NA	11906735	11907473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_11907075_11907195
ES_00020173	chr15	+	844	4	FSM	ENSMUSG00000022200.9	ENSMUST00000228301.2	912	4	-3	71	-3	48	multi-exon	FALSE	canonical	2	24	junction_3	175.150094363536	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGAACTCCAACTCAGA	18	False	NA	NA	False	NA	NA	NA	12321532	12343445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12343358
ES_00020174	chr15	+	4635	36	NNC	ENSMUSG00000022191.17	novel	4519	35	NA	NA	12	-5	intron_retention	FALSE	canonical	3	44	junction_3	169.480343812418	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGATGGTCTTTGCTACA	65	False	NA	24	True	ATTAAA	-14	NA	12824960	12935371	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_12825025_12826150_12826254_12827312_12827379_12830388_12830523_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ES_00020175	chr15	+	946	1	FSM	ENSMUSG00000089639.2	ENSMUST00000161524.2	328	1	-41	-577	-41	577	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAAAATTGACTTA	113	False	NA	NA	False	NA	NA	NA	25681842	25682788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_25681800_25682800
ES_00020177	chr15	+	6085	23	NIC	ENSMUSG00000022272.18	novel	748	4	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	157.493040643832	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	77	False	NA	16	True	AATAAA	-17	NA	25758863	25813759	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_25759238_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ES_00020181	chr15	+	4329	19	ISM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	446177	-587	-27304	219	3prime_fragment	FALSE	canonical	3	6	junction_1	14.2604737337548	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATCCTTGCTAAGAATGT	NA	False	NA	NA	False	AATAAA	-18	NA	30619373	31028774	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_30619400_30619968_30620086_30634789_30634963_30646914_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
ES_00020184	chr15	+	1432	6	FSM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	-142	1074	124	0	multi-exon	FALSE	canonical	0	0	junction_1	11.3490087672889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	2	True	NA	27	True	ATTAAA	-27	NA	31602121	31617681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_31602296_31603594_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ES_00020185	chr15	+	7006	2	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	0	4136	multi-exon	TRUE	canonical	3	117	junction_1	0	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTGCTGCTAGTGAAG	NA	False	NA	NA	False	NA	NA	NA	33831593	33838635	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_+_33837513_33837548
ES_00020187	chr15	+	2596	14	FSM	ENSMUSG00000022324.16	ENSMUST00000228570.2	2798	14	7	195	7	-195	multi-exon	TRUE	canonical	0	0	junction_1	1.10940039245046	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAATGGGATGGAGGTGT	62	False	NA	NA	False	AGTAAA	-14	NA	34306837	34428993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259_34410383_34422487_34422611_34423839_34423963_34426308_34426432_34428579
ES_00020189	chr15	+	1464	2	FSM	ENSMUSG00000022325.15	ENSMUST00000153061.2	522	2	-757	-185	-757	185	multi-exon	FALSE	canonical	3	55	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAGTGGTTGAAAATAC	NA	False	NA	NA	False	AATACA	-24	NA	34525533	34529562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_34526464_34529028
ES_00020190	chr15	+	1791	4	NIC	ENSMUSG00000022330.6	novel	1724	4	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	14.8548533034381	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGCTTCTTGAGATTCA	129	False	NA	10	True	AATAAA	-13	NA	35296255	35303448	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_35296614_35300334_35301102_35302057_35302158_35302882
ES_00020192	chr15	+	662	1	FSM	ENSMUSG00000115314.2	ENSMUST00000227179.2	1643	1	1587	-606	1587	606	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTCTGATGTAATGA	NA	False	NA	NA	False	AATAAA	-20	NA	35569975	35570637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_35570000_35570600
ES_00020193	chr15	+	4254	1	FSM	ENSMUSG00000037646.11	ENSMUST00000228738.2	4254	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35871867	35876121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_35871900_35876100
ES_00020195	chr15	+	702	2	Intergenic	novelGene_1359	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTAGTCGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	36560431	36566206	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_36560637_36565709
ES_00020197	chr15	+	256	1	FSM	ENSMUSG00000097679.2	ENSMUST00000180745.2	403	1	154	-7	154	7	mono-exon	FALSE	NA	NA	NA	NA	NA	264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTGGGTTAATAAATTG	NA	False	NA	NA	False	NA	NA	NA	37868483	37868739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_37868500_37868700
ES_00020198	chr15	+	615	1	FSM	ENSMUSG00000115771.2	ENSMUST00000228698.2	462	1	8	-161	8	161	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAAGGAATAATTTTTAG	244	False	NA	NA	False	AATACA	-43	NA	38079353	38079968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38079400_38080000
ES_00020199	chr15	+	527	3	FSM	ENSMUSG00000115456.2	ENSMUST00000227097.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGCATGGTGCGACTT	NA	False	NA	NA	False	AATAAA	-15	NA	38312536	38343383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38312602_38336050_38336148_38343018
ES_00020200	chr15	+	567	3	NNC	ENSMUSG00000115456.2	novel	527	3	NA	NA	1069	-5	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	2.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTGCTGCATGGTGC	NA	False	NA	NA	False	AATAAA	-10	NA	38313605	38343378	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_38313716_38336050_38336148_38343018
ES_00020202	chr15	+	4052	7	FSM	ENSMUSG00000022297.16	ENSMUST00000179165.9	4325	7	279	-6	-20	6	multi-exon	FALSE	canonical	2	8	junction_1	5.64702478203247	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTGTGTGCTAGGTAT	NA	False	NA	NA	False	AATAAA	-20	NA	38869707	38901589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38869828_38870619_38870959_38889060_38889258_38894209_38895228_38897244_38897394_38898202_38898623_38899780
ES_00020203	chr15	+	3389	1	FSM	ENSMUSG00000022300.11	ENSMUST00000228436.2	3389	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTAAAAATCTGGGTTA	NA	False	NA	NA	False	AGTAAA	-38	NA	38988832	38992221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38988800_38992200
ES_00020204	chr15	+	5058	26	NIC	ENSMUSG00000037386.17	novel	4760	26	NA	NA	95	-48	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	11.0478233150245	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGATTAGCTGAATATTT	NA	False	NA	9	True	ATTAAA	-20	NA	39061852	39545801	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ES_00020205	chr15	+	519	2	Intergenic	novelGene_1365	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	120	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTGTTTTTACATTGTT	NA	False	NA	NA	False	NA	NA	NA	39105237	39110890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_39105612_39110745
ES_00020207	chr15	+	1072	3	FSM	ENSMUSG00000115367.2	ENSMUST00000228503.2	1064	3	-8	0	-8	0	multi-exon	FALSE	canonical	1	1	junction_2	6	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40025994	40031472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_40026222_40028595_40028677_40030708
ES_00020209	chr15	+	4599	17	FSM	ENSMUSG00000022307.17	ENSMUST00000110297.10	4599	17	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	113.448208860916	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGGATTTTTTCAAT	NA	False	NA	NA	False	AATAAA	-21	NA	41310877	41724444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_41310986_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41712065_41712147_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
ES_00020210	chr15	+	2570	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226336.2	2547	5	-23	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	350.174510066053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGATTTAAAAAATGGCA	9616	False	NA	NA	False	TATAAA	-20	NA	44291487	44301205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297296_44297370_44299007
ES_00020211	chr15	+	2728	5	FSM	ENSMUSG00000022338.9	ENSMUST00000228474.2	2708	5	-20	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	455.94462383057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGTGAGTCTGCCATGT	9651	False	NA	NA	False	NA	NA	NA	44291522	44299975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
ES_00020213	chr15	+	2097	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	121	-287	-30	0	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAACTGATTTTCTGTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	44482956	44504911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ES_00020214	chr15	+	1374	1	FSM	ENSMUSG00000115700.2	ENSMUST00000228537.2	1672	1	275	23	275	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	1411	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGGTGGTGATTGTGG	NA	False	NA	NA	False	NA	NA	NA	48752023	48753397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_48752000_48753400
ES_00020215	chr15	+	206	1	Intergenic	novelGene_1373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTATATCTAAGTAATTC	NA	False	NA	NA	False	AAAACA	-1	NA	50413662	50413868	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_50413700_50413900
ES_00020217	chr15	+	563	2	NIC	ENSMUSG00000022364.15	novel	914	6	NA	NA	5286	-1	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAGCTGAACTGTCTT	NA	False	NA	7	True	AATAAA	-14	NA	57827094	57833456	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_57827321_57833119
ES_00020219	chr15	+	786	6	FSM	ENSMUSG00000022359.11	ENSMUST00000227142.2	786	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	23.3203773554375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATTGTTTGTTTGTT	2691	False	NA	NA	False	CATAAA	-13	NA	58004803	58018721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58018534
ES_00020222	chr15	+	4486	1	FSM	ENSMUSG00000037085.9	ENSMUST00000036937.9	4454	1	-15	-17	-15	17	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATAAATAACACTAAGAG	NA	False	NA	NA	False	AATAAA	-32	NA	58744507	58748993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_58744500_58749000
ES_00020224	chr15	+	1361	1	FSM	ENSMUSG00000115503.2	ENSMUST00000227906.2	1354	1	147	-154	147	154	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGACCTTTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	60340119	60341480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_60340100_60341500
ES_00020227	chr15	+	1161	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	21	-96	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	6.0736223860962	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATACTCTATGGGACCTT	NA	False	NA	-73	True	NA	NA	NA	61909930	62121277	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
ES_00020233	chr15	+	2326	8	ISM	ENSMUSG00000072501.6	ENSMUST00000230948.2	6584	20	7	34471	7	-832	5prime_fragment	FALSE	canonical	3	18	junction_5	17.128565471225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAATGTCAATCTTTCAT	3857	False	NA	NA	False	AATAAA	-19	NA	66449435	66482633	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66475875_66476090_66476628_66476755_66481374
ES_00020235	chr15	+	1344	7	FSM	ENSMUSG00000022332.9	ENSMUST00000230847.2	1344	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	124.213078574234	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGAAATTTTGTGTGTG	NA	False	NA	5	True	AATAAA	-5	NA	68800545	68965359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_68800683_68866900_68867020_68896548_68896689_68901563_68901760_68921227_68921311_68962982_68963042_68964749
ES_00020236	chr15	+	1424	1	FSM	ENSMUSG00000116355.2	ENSMUST00000229873.2	1478	1	198	-144	198	144	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGCTTTAGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	71181880	71183304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_71181900_71183300
ES_00020237	chr15	+	242	1	FSM	ENSMUSG00000088895.3	ENSMUST00000158270.3	178	1	29	-93	29	93	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGCAACAAATTTATGG	NA	False	NA	NA	False	NA	NA	NA	71666065	71666307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_71666100_71666300
ES_00020239	chr15	+	245	2	Antisense	novelGene_ENSMUSG00000047921.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	136	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAGAGGAGAGAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	72557131	72565506	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_72557223_72565352
ES_00020241	chr15	+	224	1	Intergenic	novelGene_1394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTTTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	73372811	73373035	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_73372800_73373000
ES_00020243	chr15	+	1026	7	NNC	ENSMUSG00000059895.14	novel	6459	4	NA	NA	-47378	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	50.769632218045	134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGTGTGAAGAGTGTTA	NA	False	NA	19	True	AATAAA	-13	NA	73547615	73629075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_73547681_73549310_73549460_73569915_73569999_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ES_00020244	chr15	+	718	6	FSM	ENSMUSG00000034730.18	ENSMUST00000189200.2	718	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.54919333848297	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAGGCTCAGCGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	74412245	74415371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74412410_74412675_74412841_74413378_74413544_74413637_74413740_74415104_74415212_74415356
ES_00020246	chr15	+	433	2	FSM	ENSMUSG00000034730.18	ENSMUST00000230935.2	752	2	319	0	319	0	multi-exon	FALSE	canonical	3	19	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGCACAGACGCGCTCGC	NA	False	NA	NA	False	NA	NA	NA	74460091	74460799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74460261_74460535
ES_00020247	chr15	+	1092	1	FSM	ENSMUSG00000022587.15	ENSMUST00000191439.2	815	1	70	-347	70	347	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCAAAGACTTCTGCCC	8487	False	NA	NA	False	NA	NA	NA	74827601	74828693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74827600_74828700
ES_00020248	chr15	+	1950	2	FSM	ENSMUSG00000047003.16	ENSMUST00000161752.2	807	2	0	-1143	0	1143	multi-exon	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGACTCAGCCAGAAGTA	NA	False	NA	NA	False	AAGAAA	-12	NA	75488574	75491636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75488781_75489892
ES_00020249	chr15	+	204	1	Intergenic	novelGene_1395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	583	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAATTATTTGGGGCT	NA	False	NA	NA	False	NA	NA	NA	75723646	75723850	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_75723600_75723800
ES_00020250	chr15	+	1108	2	FSM	ENSMUSG00000022575.6	ENSMUST00000230514.2	415	2	-103	-590	-91	478	multi-exon	FALSE	canonical	1	2	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCCCATCACTACAGAGG	NA	False	NA	NA	False	NA	NA	NA	75734084	75736019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75734331_75735157
ES_00020251	chr15	+	386	1	FSM	ENSMUSG00000103906.2	ENSMUST00000192937.2	4801	1	0	4415	0	-4415	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACCAGCTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	75781583	75781969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75781600_75782000
ES_00020253	chr15	+	1788	4	FSM	ENSMUSG00000034429.16	ENSMUST00000147641.8	1644	4	-144	0	5	0	multi-exon	FALSE	canonical	1	2	junction_1	16.3571255285137	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGAGAAGCCTGTTCTT	NA	False	NA	6	True	AATAAA	-11	NA	75841011	75847593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75841254_75844900_75845058_75845390_75845505_75846318
ES_00020258	chr15	+	207	1	FSM	ENSMUSG00000034161.9	ENSMUST00000229271.2	2007	1	90	1710	22	-1701	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGGGCGCCCGGCGGCG	4070	False	NA	NA	False	NA	NA	NA	76341741	76341948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76341700_76341900
ES_00020259	chr15	+	2125	13	FSM	ENSMUSG00000022556.12	ENSMUST00000228371.2	2102	13	-23	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	120.605071756263	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7121	False	NA	12	True	NA	NA	NA	76361621	76385172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76383331_76383416_76384147_76384254_76384466_76384537_76384616
ES_00020260	chr15	+	1965	11	FSM	ENSMUSG00000022556.12	ENSMUST00000229363.2	1965	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	80.1283969638729	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATACA	7273	False	NA	8	True	NA	NA	NA	76361773	76385168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384466
ES_00020262	chr15	+	1247	2	FSM	ENSMUSG00000022556.12	ENSMUST00000230505.2	1247	2	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATACATACATA	3329	False	NA	10	True	NA	NA	NA	76383846	76385170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76384254_76384330
ES_00020263	chr15	+	2149	4	ISM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	26	3232	26	-754	intron_retention	FALSE	canonical	3	120	junction_1	1.69967317119759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTCATCCAATGGGTT	NA	False	NA	-9	True	AATAAA	-1	NA	76423057	76425576	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871
ES_00020264	chr15	+	2031	15	FSM	ENSMUSG00000022550.19	ENSMUST00000161732.8	2026	15	-5	0	-4	0	multi-exon	FALSE	canonical	2	13	junction_4	36.3298381892508	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAATCGTTTTCTTTG	3098	False	NA	NA	False	NA	NA	NA	76460553	76480008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ES_00020265	chr15	+	740	4	FSM	ENSMUSG00000022550.19	ENSMUST00000159949.8	747	4	0	7	0	-7	multi-exon	FALSE	canonical	1	2	junction_3	73.1619208787376	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGGACTGTTGTTGTT	3149	False	NA	NA	False	NA	NA	NA	76460604	76476016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76475620
ES_00020266	chr15	+	346	1	FSM	ENSMUSG00000116238.2	ENSMUST00000230810.2	3039	1	53	2640	53	-2640	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGTTTCTTTCTACAGA	4622	False	NA	NA	False	NA	NA	NA	76462077	76462423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76462100_76462400
ES_00020267	chr15	+	1080	1	FSM	ENSMUSG00000116145.2	ENSMUST00000230081.2	1608	1	115	413	115	-413	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATACTTTAGATTTTTCCA	NA	False	NA	NA	False	AAAACA	-9	NA	76474434	76475514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76474400_76475500
ES_00020269	chr15	+	1739	10	ISM	ENSMUSG00000004187.12	ENSMUST00000230124.2	3193	17	-379	3955	-17	-2147	5prime_fragment	FALSE	canonical	2	11	junction_4	2.05480466765633	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCTATGGAGGCAATATG	5472	False	NA	NA	False	NA	NA	NA	76544519	76548440	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_76544966_76545205_76545288_76545435_76545585_76545679_76545819_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76547097_76547173_76547284_76548270
ES_00020270	chr15	+	1072	7	ISM	ENSMUSG00000004187.12	ENSMUST00000230124.2	3193	17	3580	825	211	-483	3prime_fragment	FALSE	canonical	2	12	junction_5	4.78713553878169	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCATCTCCCGGAAGCC	9431	False	NA	NA	False	NA	NA	NA	76548478	76551570	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ES_00020272	chr15	+	623	2	FSM	ENSMUSG00000022546.6	ENSMUST00000228987.2	623	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGCCAAAGATACCTGGT	5840	False	NA	NA	False	NA	NA	NA	76582261	76583103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76582284_76582502
ES_00020273	chr15	+	1445	2	FSM	ENSMUSG00000019080.9	ENSMUST00000229018.2	477	2	-968	0	1	0	multi-exon	FALSE	canonical	3	60	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGGTAAGAGGTGGACA	9244	False	NA	NA	False	NA	NA	NA	76585665	76587197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76586992_76587078
ES_00020274	chr15	+	4378	4	FSM	ENSMUSG00000033669.9	ENSMUST00000230954.2	4356	4	-22	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	33.9542175419916	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763508	76776595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76763554_76764938_76764983_76765314_76765439_76772430
ES_00020275	chr15	+	855	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	0	7636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4480.06724949526	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTGTGTTTTATCTATAA	NA	False	NA	NA	False	NA	NA	NA	76788502	76798150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790511_76798110
ES_00020276	chr15	+	859	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	0	7636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4480.06724949526	254	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTGTGTTTTATCTATAA	NA	False	NA	NA	False	NA	NA	NA	76788502	76798150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790513_76798108
ES_00020277	chr15	+	2876	7	NIC	ENSMUSG00000033287.18	novel	1180	7	NA	NA	-9	-2	intron_retention	FALSE	canonical	2	11	junction_6	43.4105082004602	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTTTTTCTCTGGGCCA	NA	False	NA	22	True	AATAAA	-29	NA	78312852	78323501	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321357
ES_00020279	chr15	+	671	4	FSM	ENSMUSG00000033287.18	ENSMUST00000162605.2	671	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	53.372901988431	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTCCCTGTCCGCACCC	1128	False	NA	NA	False	NA	NA	NA	78318181	78321779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78318211_78319784_78319911_78321100_78321195_78321357
ES_00020280	chr15	+	581	1	FSM	ENSMUSG00000116499.2	ENSMUST00000230007.2	593	1	325	-313	325	313	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTATGTTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	78705334	78705915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78705300_78705900
ES_00020282	chr15	+	1923	18	FSM	ENSMUSG00000022436.17	ENSMUST00000109698.9	1923	18	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_17	114.336569876277	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4398	False	NA	87	True	AATAAA	-20	NA	78783967	78796251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78796129
ES_00020283	chr15	+	1862	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	486.897569367065	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCTGGGTTTGTGGTCTC	NA	False	NA	22	True	AGTAAA	-12	NA	78959447	78978597	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_78959493_78959970_78960020_78961033_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
ES_00020284	chr15	+	2046	13	FSM	ENSMUSG00000068206.14	ENSMUST00000163571.8	2054	13	-14	22	-14	-4	multi-exon	FALSE	canonical	3	17	junction_1	62.6245425798331	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCATGGGCTCCTTGC	4160	False	NA	14	True	AATAAA	-14	NA	79113358	79133662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79113621_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ES_00020286	chr15	+	960	1	NIC	ENSMUSG00000042622.15	novel	1873	3	NA	NA	8486	160	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTAGTACCCGCCCCCA	NA	False	NA	NA	False	NA	NA	NA	79241087	79242047	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_79241100_79242000
ES_00020287	chr15	+	209	2	Intergenic	novelGene_1417	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	195	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTTTCTTTCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	79300162	79350542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79300193_79350363
ES_00020288	chr15	+	385	2	FSM	ENSMUSG00000022428.9	ENSMUST00000230376.2	387	2	2	0	2	0	multi-exon	FALSE	canonical	3	217	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGCAAACGAAACCAACAGT	NA	False	NA	NA	False	NA	NA	NA	79545571	79550077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79545726_79549846
ES_00020290	chr15	+	2300	2	FSM	ENSMUSG00000042535.10	ENSMUST00000230496.2	490	2	-512	-1298	-512	0	multi-exon	FALSE	canonical	3	250	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCATGTTCCCTGCCC	NA	False	NA	17	True	AATAAA	-18	NA	79602599	79605680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79603430_79604210
ES_00020291	chr15	+	419	3	FSM	ENSMUSG00000022412.15	ENSMUST00000230654.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	36.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTAGGATCCTCTTTTCC	2815	False	NA	NA	False	NA	NA	NA	80118280	80120241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80118365_80118882_80118982_80120005
ES_00020292	chr15	+	1500	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	-59	-782	-58	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4087	False	NA	32	True	AATAAA	-20	NA	80139326	80141742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
ES_00020293	chr15	+	2019	1	FSM	ENSMUSG00000042406.9	ENSMUST00000230434.2	2019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4484	False	NA	32	True	AATAAA	-20	NA	80139723	80141742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80139700_80141700
ES_00020296	chr15	+	282	1	FSM	ENSMUSG00000047888.11	ENSMUST00000227546.2	620	1	475	-137	475	137	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAATACGTTTATGGA	4908	False	NA	NA	False	NA	NA	NA	80767348	80767630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_80767300_80767600
ES_00020298	chr15	+	3254	9	FSM	ENSMUSG00000022401.13	ENSMUST00000041609.11	3236	9	-18	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	17.1823856027037	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	81284370	81339089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81335101_81335223_81337065
ES_00020300	chr15	+	6934	26	NNC	ENSMUSG00000055024.13	novel	9566	31	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_14	20.43236648066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTGTCACTTCTTTGG	NA	False	NA	22	True	AATAAA	-22	NA	81497515	81536278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_81497617_81500232_81500327_81500926_81501065_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518174_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ES_00020302	chr15	+	4645	16	FSM	ENSMUSG00000022394.15	ENSMUST00000172620.8	4645	16	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_14	41.7399355799961	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAACAATGTGATGATA	NA	False	NA	7	True	AATAAA	-14	NA	81548154	81572506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81548226_81551359_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
ES_00020305	chr15	+	351	3	FSM	ENSMUSG00000022477.14	ENSMUST00000157003.8	351	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	883.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTAGCCTATGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81773890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81756750_81773498_81773581_81773686
ES_00020307	chr15	+	762	3	FSM	ENSMUSG00000022471.15	ENSMUST00000170907.2	802	3	0	40	0	-40	multi-exon	FALSE	canonical	3	583	junction_2	4	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGGAGACAAAAGCAGGCA	NA	False	NA	NA	False	TTTAAA	-45	NA	81907176	81911917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81907263_81909705_81909890_81911425
ES_00020308	chr15	+	4940	5	FSM	ENSMUSG00000068114.8	ENSMUST00000229456.2	4919	5	-18	-3	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.75925291729789	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTCTTTGGCTTCTTTT	NA	False	NA	25	True	AATAAA	-36	NA	82012178	82026404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82012251_82014252_82014372_82015624_82018964_82019270_82019343_82025066
ES_00020310	chr15	+	218	1	Intergenic	novelGene_1441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAATTTGGGACTAGCC	4638	False	NA	NA	False	NA	NA	NA	82027597	82027815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_82027600_82027800
ES_00020311	chr15	+	3004	3	FSM	ENSMUSG00000022463.9	ENSMUST00000231065.2	2664	3	-57	-283	8	14	multi-exon	FALSE	canonical	3	740	junction_2	5.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGAAGTGTGACTGTGC	2181	False	NA	NA	False	NA	NA	NA	82031389	82058109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82031692_82053938_82055485_82056953
ES_00020313	chr15	+	865	7	FSM	ENSMUSG00000022456.19	ENSMUST00000230507.2	865	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	10.9048918686371	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAGGAGGAACTCATGGG	1594	False	NA	NA	False	NA	NA	NA	82168630	82177771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82177446
ES_00020314	chr15	+	587	3	NNC	ENSMUSG00000022452.17	novel	597	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	44	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230214	82233291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_82230422_82232100_82232243_82233053
ES_00020315	chr15	+	210	2	Antisense	novelGene_ENSMUSG00000041852.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	265	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGCATGAGCCCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	82719232	82738149	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_82719393_82738099
ES_00020316	chr15	+	811	5	FSM	ENSMUSG00000058586.13	ENSMUST00000172101.8	811	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	10.2225241501304	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCCAGACTTTAGGGGAT	NA	False	NA	NA	False	NA	NA	NA	82984463	82987245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825
ES_00020318	chr15	+	2503	11	FSM	ENSMUSG00000058586.13	ENSMUST00000166427.8	2577	11	74	0	74	0	multi-exon	FALSE	canonical	3	56	junction_1	10.3169763012231	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	False	NA	17	True	AATAAA	-18	NA	82984568	83000875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ES_00020319	chr15	+	2459	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCACCTGAGACTCTGC	NA	False	NA	NA	False	AATAAA	-18	NA	83056550	83059009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_83056600_83059000
ES_00020321	chr15	+	1646	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	16	-2965	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	484.902914751699	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGGTGTCCTGGATGTGG	NA	False	NA	26	True	AATAAA	-12	NA	84076457	84098503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084917_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
ES_00020323	chr15	+	2592	10	NNC	ENSMUSG00000051864.11	novel	3229	13	NA	NA	48038	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	26.9173403195142	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86167743	86382704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_86167857_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
ES_00020324	chr15	+	2603	4	FSM	ENSMUSG00000054863.10	ENSMUST00000068088.8	2603	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGGCTTTTGTTCCCTGG	NA	False	NA	NA	False	AATAAA	-21	NA	87509430	87643565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_87509688_87565680_87565831_87604702_87604831_87641497
ES_00020325	chr15	+	5374	4	NNC	ENSMUSG00000034333.16	novel	5425	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	72.3509963073534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGACTGATGATGGCTT	NA	False	NA	35	True	ATTAAA	-22	NA	88635962	88668719	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_88636006_88638962_88639137_88654740_88654790_88663611
ES_00020329	chr15	+	1940	7	FSM	ENSMUSG00000036561.10	ENSMUST00000226221.2	2559	7	-15	634	0	-634	multi-exon	FALSE	canonical	1	2	junction_5	10.6874796945876	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAAAGATAAAATAAA	6663	False	NA	NA	False	NA	NA	NA	89095755	89144241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137454_89140911_89141053_89143268
ES_00020330	chr15	+	4406	26	NIC	ENSMUSG00000036561.10	novel	3378	25	NA	NA	0	79	combination_of_known_junctions	FALSE	canonical	2	7	junction_17	6.88697321034429	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTAGTTGGGACTCATGT	6663	False	NA	NA	False	NA	NA	NA	89095755	89171292	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137465_89140865_89141053_89143268_89143407_89146555_89146622_89149331_89149445_89149807_89149922_89152705_89152833_89154012_89154166_89158172_89158389_89159655_89159721_89161457_89161574_89162901_89162988_89163475_89163557_89163922_89164021_89164209_89164268_89164561_89164687_89164957_89165122_89166050_89166208_89166293_89166383_89167085_89167282_89169981_89170210_89170300
ES_00020332	chr15	+	403	2	FSM	ENSMUSG00000022619.6	ENSMUST00000137755.2	382	2	-21	0	-21	0	multi-exon	FALSE	canonical	3	98	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGATGGAGATAGGCAGG	2366	False	NA	NA	False	NA	NA	NA	89339223	89340861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89339493_89340727
ES_00020333	chr15	+	383	4	FSM	ENSMUSG00000022623.18	ENSMUST00000135214.2	596	4	203	10	203	-10	multi-exon	FALSE	canonical	1	2	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCACTGTGCTACCCGCC	6806	False	NA	NA	False	NA	NA	NA	89384528	89387614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89384622_89385606_89385679_89387322_89387432_89387505
ES_00020334	chr15	+	2788	13	FSM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	-26	-721	-26	721	multi-exon	FALSE	canonical	2	14	junction_9	6.39172642301489	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCTTGATAATTATT	NA	False	NA	NA	False	ATTAAA	-17	NA	91083670	91145818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
ES_00020335	chr15	+	946	6	FSM	ENSMUSG00000059883.17	ENSMUST00000138306.2	1159	6	-10	223	0	-223	multi-exon	FALSE	canonical	2	7	junction_3	9.3037626796904	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGGCCTGGTTTCCCCAT	NA	False	NA	NA	False	NA	NA	NA	94441523	94454611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507
ES_00020336	chr15	+	1099	7	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	10085	5181	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	9.45897574910847	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGTCTTGGTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	94451637	94460015	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459812
ES_00020337	chr15	+	526	2	Antisense	novelGene_ENSMUSG00000097536.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCCAGAATGGACCGG	NA	False	NA	NA	False	NA	NA	NA	96080434	96081320	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_96080932_96081291
ES_00020338	chr15	+	1619	1	Genic_Genomic	ENSMUSG00000091050.2	novel	NA	NA	NA	NA	658	17	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATAAAAAAAGAAGTTCC	9475	False	NA	NA	False	NA	NA	NA	98465862	98467481	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_+_98465900_98467500
ES_00020340	chr15	+	2477	13	FSM	ENSMUSG00000003352.15	ENSMUST00000230490.2	2477	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	9.50548087508816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	382	False	NA	5	True	AATAAA	-16	NA	98532985	98542410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98533095_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ES_00020342	chr15	+	1116	1	FSM	ENSMUSG00000116494.2	ENSMUST00000229079.2	1116	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGATTGGCTCTTGTCTG	4479	False	NA	NA	False	NA	NA	NA	98840430	98841546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98840400_98841500
ES_00020343	chr15	+	1273	8	NNC	ENSMUSG00000023484.15	novel	1757	9	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	10.6961751699056	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTGTGTTGGTCTGAGG	70	False	NA	9	True	AATAAA	-21	NA	98953826	98956857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956544
ES_00020344	chr15	+	1202	2	FSM	ENSMUSG00000032783.10	ENSMUST00000229740.2	865	2	-122	-215	-122	215	multi-exon	FALSE	canonical	3	91	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGAGGAGGGGTAGGG	NA	False	NA	NA	False	NA	NA	NA	98979342	98980700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98979851_98980006
ES_00020346	chr15	+	386	3	FSM	ENSMUSG00000038009.8	ENSMUST00000146173.2	381	3	-5	0	-5	0	multi-exon	TRUE	canonical	0	0	junction_1	3	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTTGCCCTAGAGGAT	1037	False	NA	NA	False	NA	NA	NA	98991045	98998798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98991152_98997009_98997195_98998703
ES_00020347	chr15	+	1497	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	3974	False	NA	3	True	AATAAA	-21	NA	98997243	99002618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_98997366_98998703_98999657_99002196
ES_00020348	chr15	+	3633	15	NNC	ENSMUSG00000037579.8	novel	3225	2	NA	NA	-286	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.13787173112595	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTTGGAACTCAGTAC	NA	False	NA	4	True	AATAAA	-5	NA	99122455	99140695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_99122585_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99137808_99138767_99138875_99139630_99139708_99139800
ES_00020349	chr15	+	3341	26	NIC	ENSMUSG00000023007.16	novel	3129	25	NA	NA	-24	0	combination_of_known_junctions	TRUE	canonical	3	106	junction_21	27.793351723029	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	33	True	TTTAAA	-14	NA	99192943	99214888	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ES_00020350	chr15	+	4065	24	FSM	ENSMUSG00000023007.16	ENSMUST00000150641.8	4065	24	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_19	28.9761651611806	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGTCCTCTTCATGT	NA	False	NA	44	True	TTTAAA	-25	NA	99193119	99214899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ES_00020355	chr15	+	378	4	FSM	ENSMUSG00000023018.6	ENSMUST00000229845.2	378	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	138.147264419773	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGGAAGCGGCTAGATA	8026	False	NA	NA	False	NA	NA	NA	99600494	99601692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99600568_99600986_99601175_99601471_99601515_99601618
ES_00020357	chr15	+	1494	2	FSM	ENSMUSG00000058057.6	ENSMUST00000075420.6	1652	2	112	46	112	-46	multi-exon	FALSE	canonical	1	1	junction_1	0	929	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTACTTACATATAATAAT	4594	False	NA	NA	False	NA	NA	NA	100232921	100238210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_100233309_100237103
ES_00020358	chr15	+	2278	8	FSM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	-12	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	31.1808418417333	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGGAATTACTTAT	2335	False	NA	26	True	AGTAAA	-15	NA	100366903	100377044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_100367020_100367565_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ES_00020361	chr15	+	2702	7	ISM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	110	0	0	0	3prime_fragment	FALSE	canonical	3	29	junction_1	32.1942886584286	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGGAATTACTTAT	2457	False	NA	26	True	AGTAAA	-15	NA	100367025	100377044	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ES_00020362	chr15	+	3767	3	FSM	ENSMUSG00000000346.10	ENSMUST00000230661.2	751	3	-422	-2594	163	0	multi-exon	FALSE	canonical	3	516	junction_1	416.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513392	100518642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_100514204_100514793_100514913_100515805
ES_00020363	chr15	+	387	2	FSM	ENSMUSG00000023032.13	ENSMUST00000160256.2	421	2	0	34	0	-34	multi-exon	FALSE	canonical	3	25	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTCGACATAAATACTAAC	NA	False	NA	NA	False	NA	NA	NA	100659768	100672810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_100659856_100672510
ES_00020365	chr15	+	1846	11	ISM	ENSMUSG00000023033.15	ENSMUST00000108908.6	7030	27	3	66851	3	-8	5prime_fragment	FALSE	canonical	0	0	junction_3	23.195689254687	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCATCCTGCTTGGCC	6979	False	NA	NA	False	AATAAA	-16	NA	100768835	100872640	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_100768950_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857483_100857576_100866901_100867124_100868084_100868149_100869400_100869543_100870634_100870842_100872303
ES_00020366	chr15	+	2406	7	NNC	ENSMUSG00000023034.8	novel	893	2	NA	NA	1189	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	68.8486665730636	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101165915	101172676	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_101165971_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ES_00020368	chr15	+	314	1	FSM	ENSMUSG00000116395.2	ENSMUST00000229927.2	2437	1	1938	185	1938	-185	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTTTCCTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	101215920	101216234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_101215900_101216200
ES_00020369	chr15	+	1026	8	NNC	ENSMUSG00000023039.18	novel	3563	8	NA	NA	2695	15	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	10.6885404971485	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTAGGAGTGGTACTCAC	NA	False	NA	21	True	AATAAA	-28	NA	101313024	101325685	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_101313056_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
ES_00020374	chr15	+	3970	6	NIC	ENSMUSG00000046897.18	novel	3932	7	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	66.3716807079646	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATGTCCTCTTTGAGAA	1008	False	NA	20	True	AATAAA	-21	NA	102112184	102124036	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102112238_102113005_102113522_102116205_102116356_102116670_102116797_102117589_102117709_102121030
ES_00020380	chr15	+	3134	6	FSM	ENSMUSG00000001280.14	ENSMUST00000163709.8	3134	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	51.6658494559027	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTTGTGCTATCTTGTCA	NA	False	NA	NA	False	ATTAAA	-15	NA	102314767	102341114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_102314858_102316206_102316368_102317592_102318155_102334065_102334232_102338391_102338592_102339159
ES_00020385	chr15	+	763	3	NIC	ENSMUSG00000023047.12	novel	1938	11	NA	NA	29	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	69.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360786	102363065	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102360995_102361466_102361604_102362647
ES_00020387	chr15	+	1641	13	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	169.73181460436	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2019	False	NA	5	True	ATTAAA	-5	NA	102378983	102407316	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ES_00020395	chr15	+	1496	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102427160	102432109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ES_00020403	chr15	-	2417	1	FSM	ENSMUSG00000114999.2	ENSMUST00000227053.2	2308	1	8	-117	8	117	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTATTTCACCATGTGT	NA	False	NA	NA	False	NA	NA	NA	3249172	3246755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_3246800_3249200
ES_00020405	chr15	-	5199	7	NNC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	0	11	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	107.135039397326	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTTATATTTTATTC	2180	False	NA	1	True	AATAAA	-31	NA	4025226	4011505	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021437_4021550_4021839_4021947_4025096
ES_00020406	chr15	-	5136	7	NNC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	110.859896566191	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTTTCTTACTTTCTT	2211	False	NA	-12	True	AATAAA	-18	NA	4025195	4011518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4024776_4024870_4025096
ES_00020408	chr15	-	797	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	-50	-265	-50	265	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTAAAATAGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	5150667	5149870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_5149900_5150700
ES_00020409	chr15	-	8721	39	NNC	ENSMUSG00000022141.8	novel	9423	47	NA	NA	85093	0	intron_retention	FALSE	canonical	1	1	junction_37	21.1750552298907	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTGTTTCCATTTGAA	9165	False	NA	0	True	AATAAA	-22	NA	8388854	8320100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8380540_8380605_8381296_8388123
ES_00020410	chr15	-	3906	11	NNC	ENSMUSG00000005360.15	novel	4163	10	NA	NA	0	45664	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.6604076963132	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAACTACCATTATTC	NA	False	NA	NA	False	NA	NA	NA	8739965	8617943	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_8617973_8663610_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
ES_00020412	chr15	-	856	1	FSM	ENSMUSG00000103047.2	ENSMUST00000195237.2	2968	1	354	1758	354	-1758	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGACATTCCTGCCAA	NA	False	NA	NA	False	TTTAAA	-41	NA	8684203	8683347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_8683300_8684200
ES_00020413	chr15	-	954	3	FSM	ENSMUSG00000044224.17	ENSMUST00000146323.8	954	3	0	0	0	0	multi-exon	FALSE	canonical	3	660	junction_1	135.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATGTGCCTTTCTGCTT	4746	False	NA	-25	True	ATTAAA	-13	NA	10450078	10446851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_10447313_10447781_10447858_10449661
ES_00020416	chr15	-	4583	16	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-4	-6	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	41.6628798279182	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTATGGATTTGTGGTGT	8893	False	NA	-9	True	AATAAA	-20	NA	10714657	10569060	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
ES_00020417	chr15	-	4829	18	NNC	ENSMUSG00000022246.15	novel	4909	18	NA	NA	-696	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_17	45.9273534977573	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8144	False	NA	-3	True	AATAAA	-26	NA	10715406	10569054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10715291
ES_00020418	chr15	-	4070	17	FSM	ENSMUSG00000022241.7	ENSMUST00000228814.2	4093	17	0	23	0	-23	multi-exon	FALSE	canonical	1	53	junction_14	753.823480560104	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCGTGTTTATTATTAGAT	NA	False	NA	NA	False	AATAAA	-4	NA	11399687	11382409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11392121_11392317_11392436_11392872_11392995_11393242_11393363_11394309_11394501_11397266_11397348_11399571
ES_00020421	chr15	-	1637	2	Genic_Genomic	ENSMUSG00000107344.2	novel	363	1	NA	NA	-5305	629	multi-exon	FALSE	canonical	2	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAGGAGAACCAGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	12037318	12031021	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_-_12032054_12036713
ES_00020422	chr15	-	3718	10	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	0	41238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.452836542281	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCCCTCTTACATACAT	NA	False	NA	NA	False	NA	NA	NA	12824697	12767024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_12767049_12808496_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
ES_00020423	chr15	-	3507	9	NIC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	30	-234	combination_of_known_junctions	FALSE	canonical	3	21	junction_6	102.879708276219	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAATTTTTTATTATTT	2	True	NA	-5	True	AATAAA	-18	NA	12824667	12808496	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818214_12821489_12821640_12823646_12823793_12824552
ES_00020424	chr15	-	3156	8	FSM	ENSMUSG00000022195.8	ENSMUST00000228177.2	3156	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	133.553321920192	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAATTAAATCCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	12824697	12808731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818214_12821489_12821640_12824552
ES_00020425	chr15	-	650	3	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	2	-2452	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	123.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTACATTTATAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	12824695	12822441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_12822803_12823646_12823793_12824552
ES_00020426	chr15	-	205	1	Intergenic	novelGene_1347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAGCAATCCCAGAGA	NA	False	NA	NA	False	NA	NA	NA	20042279	20042074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_20042100_20042300
ES_00020427	chr15	-	1281	1	FSM	ENSMUSG00000115301.2	ENSMUST00000226313.2	1245	1	152	-188	152	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGAAAGGAGGCT	NA	False	NA	NA	False	AATAAA	-21	NA	26729649	26728368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_26728400_26729600
ES_00020428	chr15	-	1367	6	NIC	ENSMUSG00000046034.9	novel	1491	7	NA	NA	8	-24	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	98.7825895590918	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTTACTTCTCTTTTT	NA	False	NA	-29	True	AAGAAA	-45	NA	27630756	27606028	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27630543
ES_00020429	chr15	-	6423	26	ISM	ENSMUSG00000022263.11	ENSMUST00000090247.7	11495	57	206810	0	4745	0	3prime_fragment	FALSE	canonical	2	6	junction_23	3.76595273470074	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGTGTTAGGCTTTTTA	NA	False	NA	0	True	ATTAAA	-14	NA	27819124	27730736	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742457_27742597_27744038_27744287_27748006_27748816_27749864_27750043_27752675_27752868_27753797_27753876_27754098_27754150_27755223_27755317_27756551_27756642_27758425_27758496_27764039_27764144_27765804_27765872_27767970_27768120_27770395_27770492_27772995_27773167_27773966_27774260_27805715_27805960_27818149_27818250_27818985
ES_00020431	chr15	-	1207	1	FSM	ENSMUSG00000068964.6	ENSMUST00000091031.6	435	1	-26	-746	-26	746	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCACTTCCTCTAGCT	6640	False	NA	NA	False	AATAAA	-39	NA	31446989	31445782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31445800_31447000
ES_00020432	chr15	-	555	4	FSM	ENSMUSG00000039100.11	ENSMUST00000226868.2	736	4	178	3	178	-3	multi-exon	FALSE	canonical	3	107	junction_3	18.4571575998762	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAATGCTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	31471959	31465399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31465533_31467835_31467926_31469688_31469824_31471762
ES_00020433	chr15	-	426	1	FSM	ENSMUSG00000115224.2	ENSMUST00000226633.2	350	1	-37	-39	-37	39	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTTGAATACTTTGT	9630	False	NA	NA	False	NA	NA	NA	31521456	31521030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31521000_31521500
ES_00020438	chr15	-	2412	2	FSM	ENSMUSG00000058600.14	ENSMUST00000135417.2	2412	2	0	0	0	0	multi-exon	FALSE	canonical	3	5662	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	423	False	NA	-20	True	AATAAA	-27	NA	34443306	34440650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_34442927_34443170
ES_00020439	chr15	-	228	1	FSM	ENSMUSG00000092230.2	ENSMUST00000174284.2	929	1	524	177	524	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAGTCGGAGGCAGGTGC	NA	False	NA	NA	False	AAGAAA	-19	NA	36120548	36120320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_36120300_36120500
ES_00020441	chr15	-	2856	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2033.29432093722	612	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568046_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600837_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00020442	chr15	-	2855	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2033.29432093722	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568045_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600837_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00020443	chr15	-	2854	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2033.29432093722	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568044_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600837_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00020446	chr15	-	2853	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2033.29432093722	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568043_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600837_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00020447	chr15	-	2855	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2033.29432093722	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568047_36595905_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600837_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00020450	chr15	-	2761	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	0	61910	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGGAGACTTGGAAAATC	758	False	NA	NA	False	NA	NA	NA	36793763	36709103	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36709130_36771016_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ES_00020455	chr15	-	3074	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	0	96851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	972.418891219211	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATATATATATA	NA	False	NA	NA	False	NA	NA	NA	38300950	38194855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_38194888_38294658_38296409_38296858_38297772_38297865_38298097_38300802
ES_00020457	chr15	-	5889	8	NNC	ENSMUSG00000022299.10	novel	5905	7	NA	NA	-12	8	at_least_one_novel_splicesite	FALSE	non_canonical	2	8	junction_1	33.0818403851011	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCTTTCATTTACTTA	NA	False	NA	NA	False	AATAAA	-24	NA	38976123	38954617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_38955534_38955569_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ES_00020458	chr15	-	545	2	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGGTAGTAGAACCCTAA	1754	False	NA	NA	False	NA	NA	NA	39110916	39105237	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_39105714_39110847
ES_00020459	chr15	-	3223	3	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	25	junction_2	25	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGGTAGTAGAACCCTAA	1754	False	NA	NA	False	NA	NA	NA	39110916	39105237	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_39106160_39108258_39109961_39110317
ES_00020460	chr15	-	696	1	FSM	ENSMUSG00000116215.2	ENSMUST00000229397.2	1424	1	438	290	438	-290	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAAGGGGAGGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	41895700	41895004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_41895000_41895700
ES_00020461	chr15	-	1234	1	FSM	ENSMUSG00000096157.3	ENSMUST00000178604.3	1678	1	44	400	44	-400	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCTGAGAAGGAAGGAGA	NA	False	NA	NA	False	NA	NA	NA	45843389	45842155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_45842200_45843400
ES_00020462	chr15	-	9875	6	FSM	ENSMUSG00000038679.17	ENSMUST00000183757.8	6202	6	4	-3677	1	0	multi-exon	FALSE	canonical	1	1	junction_5	8.30421579681068	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTATAGTAGCATTA	NA	False	NA	NA	False	ATTAAA	-20	NA	50752441	50518147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752337
ES_00020464	chr15	-	1252	9	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	0	14369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	639.504104756177	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTCCTTGGACAGTG	NA	False	NA	NA	False	NA	NA	NA	51728850	51635584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_51635616_51649958_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ES_00020465	chr15	-	1249	9	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	0	14369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	639.504104756177	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTCCTTGGACAGTG	NA	False	NA	NA	False	NA	NA	NA	51728850	51635584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_51635611_51649956_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ES_00020466	chr15	-	3688	15	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	-73	43331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	201.859872593008	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACGTAAGAAAGTTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	51855216	51782304	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_51782326_51825997_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
ES_00020468	chr15	-	3281	2	FSM	ENSMUSG00000022422.14	ENSMUST00000143523.2	3281	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACAG	1520	False	NA	NA	False	NA	NA	NA	54951153	54947114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_54950240_54950997
ES_00020469	chr15	-	4851	7	FSM	ENSMUSG00000060429.13	ENSMUST00000039769.13	4919	7	63	5	63	-5	multi-exon	FALSE	canonical	0	0	junction_6	17.2916164657906	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATGCCTAGGCTTATAA	NA	False	NA	-3	True	AATAAA	-16	NA	55770282	55499788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_55502824_55506050_55506242_55511252_55511450_55539699_55539840_55612583_55612792_55655429_55655647_55769419
ES_00020470	chr15	-	289	2	Intergenic	novelGene_1379	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTCCTTCTCTATTTAC	NA	False	NA	NA	False	NA	NA	NA	55740374	55734865	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_55734973_55740192
ES_00020471	chr15	-	5239	1	Intergenic	novelGene_1380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTTATTGTTGCGAC	NA	False	NA	NA	False	NA	NA	NA	55740296	55735057	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_55735100_55740300
ES_00020472	chr15	-	3042	9	NNC	ENSMUSG00000022365.7	novel	3175	8	NA	NA	-114	37578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	146.412729979329	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCACAGGTGTCTCTACTG	NA	False	NA	NA	False	NA	NA	NA	57755958	57695319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_57695345_57733169_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ES_00020475	chr15	-	727	1	FSM	ENSMUSG00000022360.9	ENSMUST00000226582.2	2047	1	1299	21	1299	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACCCTGTCTCGAAAAA	NA	False	NA	NA	False	NA	NA	NA	57991108	57990381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57990400_57991100
ES_00020476	chr15	-	1127	1	FSM	ENSMUSG00000093677.2	ENSMUST00000176387.2	1491	1	-5	369	-5	-369	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCTAATCTCAGACATAT	NA	False	NA	NA	False	NA	NA	NA	58653805	58652678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58652700_58653800
ES_00020477	chr15	-	963	12	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	30.1270038941207	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805548	58772822	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795677_58795818_58798284_58798335_58800532_58800599_58805527
ES_00020479	chr15	-	2089	2	FSM	ENSMUSG00000050891.11	ENSMUST00000226141.2	2089	2	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGCTTCTTGCTTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	58805562	58798544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58800599_58805527
ES_00020480	chr15	-	487	4	FSM	ENSMUSG00000022353.11	ENSMUST00000227045.2	487	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	32.7854981491648	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTCGCCCTGTCCCGGG	NA	False	NA	NA	False	NA	NA	NA	58825432	58817341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58817374_58817694_58817869_58823318_58823530_58825362
ES_00020483	chr15	-	549	1	FSM	ENSMUSG00000101167.2	ENSMUST00000151919.2	1112	1	571	-8	571	8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCGGGGGCGAAGGAGG	2127	False	NA	NA	False	NA	NA	NA	62090610	62090061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_62090100_62090600
ES_00020484	chr15	-	3878	13	NNC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	329.653216358578	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCATTTGTATATATATAT	NA	False	NA	0	True	NA	NA	NA	63932327	63800941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811607_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
ES_00020485	chr15	-	3960	14	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	121	junction_10	363.626149130341	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCTCATTTGTATATATA	NA	False	NA	-3	True	NA	NA	NA	63932325	63800944	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63829433_63829517_63842778_63842818_63894418_63894470_63932043
ES_00020486	chr15	-	6094	28	FSM	ENSMUSG00000022377.17	ENSMUST00000177083.8	4415	28	0	-1679	0	0	multi-exon	TRUE	canonical	3	46	junction_19	18.359240953674	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTGACATCAGGCCA	NA	False	NA	-8	True	AATAAA	-20	NA	64184488	63958705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
ES_00020490	chr15	-	215	3	Intergenic	novelGene_1388	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATTCTAAGCGACAACA	NA	False	NA	NA	False	NA	NA	NA	67468031	67452259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_67452276_67453885_67453905_67467851
ES_00020492	chr15	-	4499	34	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	35	4	combination_of_known_junctions	FALSE	canonical	3	16	junction_31	58.6938329288105	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1825	False	NA	0	True	ATTAAA	-22	NA	73294892	73076946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73264192_73264297_73266496_73266594_73294857
ES_00020493	chr15	-	4595	34	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	-4	4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_31	57.2755330401397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1780	False	NA	0	True	ATTAAA	-22	NA	73294937	73076946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73263607_73263730_73266496_73266594_73294857
ES_00020494	chr15	-	4813	34	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	0	4	combination_of_known_splicesites	TRUE	canonical	2	4	junction_31	59.9072438825652	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1752	False	NA	0	True	ATTAAA	-22	NA	73294965	73076946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73231874_73232187_73236889_73237045_73266496_73266594_73294857
ES_00020495	chr15	-	4543	33	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	22	junction_30	49.759882419852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1677	False	NA	0	True	ATTAAA	-22	NA	73295040	73076946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73266496_73266594_73294857
ES_00020496	chr15	-	4643	33	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	22	4	combination_of_known_junctions	FALSE	canonical	3	34	junction_31	46.9187191954075	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1610	False	NA	0	True	ATTAAA	-22	NA	73295107	73076946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73266496_73266594_73294857
ES_00020497	chr15	-	4619	34	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	22	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	68.2081565289657	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGCCTTTTTTTTTTTT	1610	False	NA	0	True	ATTAAA	-22	NA	73295107	73076946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73083835_73083845_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73266496_73266594_73294857
ES_00020500	chr15	-	928	3	FSM	ENSMUSG00000075602.11	ENSMUST00000023248.13	819	3	-108	-1	93	0	multi-exon	FALSE	canonical	3	72	junction_1	8	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGTTCTCCATTTTTCT	9797	False	NA	-3	True	AATAAA	-16	NA	74869591	74866725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74867329_74868300_74868418_74869383
ES_00020501	chr15	-	243	2	FSM	ENSMUSG00000075602.11	ENSMUST00000190188.2	336	2	93	0	93	0	multi-exon	FALSE	canonical	3	88	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTGAGACTTCTTGCCC	9797	False	NA	NA	False	NA	NA	NA	74869591	74868382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74868418_74869383
ES_00020502	chr15	-	522	4	FSM	ENSMUSG00000079018.11	ENSMUST00000187347.7	522	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	10.2306728354819	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATGTTATAGAAGGTC	9872	False	NA	NA	False	NA	NA	NA	74920637	74917172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74917460_74919201_74919319_74920290_74920374_74920602
ES_00020504	chr15	-	1850	14	NNC	ENSMUSG00000000934.10	novel	1903	14	NA	NA	49	-1	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_10	24.9979880847244	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTGTTTGTCACTGTGA	NA	False	NA	-8	True	AATAAA	-10	NA	75550600	75528884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541321_75541910_75542034_75546140_75546263_75547867_75547981_75550501
ES_00020505	chr15	-	1893	14	NNC	ENSMUSG00000000934.10	novel	1903	14	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_11	25.7640637758976	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTGTTTGTCACTGTGA	NA	False	NA	-8	True	AATAAA	-10	NA	75550643	75528884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542031_75546140_75546263_75547867_75547981_75550501
ES_00020507	chr15	-	962	8	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	250	junction_7	1032.38266121806	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACTCCGCCTCTTGTGTT	NA	False	NA	-10	True	ATTAAA	-12	NA	75781144	75767340	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773102_75781093
ES_00020511	chr15	-	5561	38	NNC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	0	30509	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.1145758319883	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAAATGGTATGTTCTC	NA	False	NA	NA	False	NA	NA	NA	75941603	75888497	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75888535_75919006_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00020512	chr15	-	1905	13	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	0	53533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	601.479351035613	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAAATGGTATGTTCTC	NA	False	NA	NA	False	NA	NA	NA	75952761	75888497	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75888534_75942038_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949549_75952698
ES_00020516	chr15	-	1814	11	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	121	junction_10	401.11844884024	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952749	75942030	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949549_75952698
ES_00020519	chr15	-	1188	1	FSM	ENSMUSG00000002524.18	ENSMUST00000228459.2	1008	1	57	-237	45	237	mono-exon	FALSE	NA	NA	NA	NA	NA	417	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAGTGTCATTATTGAGA	NA	False	NA	NA	False	NA	NA	NA	75952674	75951486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75951500_75952700
ES_00020520	chr15	-	2496	12	FSM	ENSMUSG00000075590.5	ENSMUST00000228022.2	2496	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.87634249459548	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGCATGGTCTGACATAG	NA	False	NA	1	True	AATAAA	-44	NA	75961862	75957442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75958994_75959079_75959136_75959221_75959286_75959369_75959424_75960139_75960276_75960358_75960410_75960498_75960602_75960713_75960847_75961285_75961382_75961458_75961515_75961596_75961681_75961750
ES_00020522	chr15	-	9742	3	NNC	ENSMUSG00000118671.1	novel	12332	3	NA	NA	18227	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	107	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGACTCATTTGCTCTG	NA	False	NA	-7	True	AATAAA	-17	NA	75986168	75973336	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75974788_75976332_75976420_75977964
ES_00020524	chr15	-	1140	8	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	47.1584389833563	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTCTGTTCTTGGAT	8533	False	NA	-2	True	ATTAAA	-17	NA	76234891	76231238	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234680
ES_00020527	chr15	-	1988	9	NNC	ENSMUSG00000022559.9	novel	1953	8	NA	NA	0	9302	intron_retention	TRUE	non_canonical	0	0	junction_1	59.4672966848166	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACCAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	76422935	76410618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76410650_76419922_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
ES_00020528	chr15	-	4469	38	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	0	69384	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	103.599054345871	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACCAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	76491711	76410618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76410651_76480006_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
ES_00020529	chr15	-	2094	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	0	-3	0	0	multi-exon	FALSE	canonical	3	158	junction_6	11.5325625946708	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTATTTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	76422946	76419926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
ES_00020530	chr15	-	2918	21	FSM	ENSMUSG00000034022.9	ENSMUST00000230903.2	2904	21	0	-14	0	0	multi-exon	FALSE	canonical	3	505	junction_18	48.2052901661218	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTCATTGTGTTTA	NA	False	NA	1	True	TATAAA	-30	NA	76485216	76480002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76480133_76480208_76480348_76480419_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137
ES_00020531	chr15	-	4425	37	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_18	103.437924964626	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACGAGTGTGTGGTCAT	NA	False	NA	-7	True	TATAAA	-22	NA	76491706	76480010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484324_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
ES_00020536	chr15	-	2067	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	0	-4	0	4	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTTCTTGTAGAGTTT	8666	False	NA	2	True	AATAAA	-25	NA	76501048	76496578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ES_00020537	chr15	-	948	11	NNC	ENSMUSG00000115987.2	novel	911	10	NA	NA	0	2698	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	318.273467320165	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAAAACAAAAGAA	9624	False	NA	NA	False	NA	NA	NA	76510253	76503588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76503627_76506288_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ES_00020538	chr15	-	5367	36	Fusion	ENSMUSG00000059323.15_ENSMUSG00000115987.2	novel	4235	26	NA	NA	0	2698	multi-exon	FALSE	non_canonical	0	0	junction_1	363.208722811733	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAAAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	76524158	76503588	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr15_-_76503627_76506288_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
ES_00020539	chr15	-	1645	8	FSM	ENSMUSG00000115987.2	ENSMUST00000229261.2	1631	8	0	-14	0	0	multi-exon	FALSE	canonical	3	892	junction_7	94.9343489588721	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGAGCCCCCGCCCTGT	9591	False	NA	-10	True	AATAAA	-32	NA	76510286	76506293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ES_00020540	chr15	-	864	9	NIC	ENSMUSG00000115987.2	novel	911	10	NA	NA	8	-4	combination_of_known_splicesites	FALSE	canonical	3	33	junction_7	331.20912483656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATACTGAGCCCCCGCC	9632	False	NA	-14	True	AATAAA	-28	NA	76510245	76506297	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76509333_76509406_76510188
ES_00020544	chr15	-	2942	3	FSM	ENSMUSG00000053929.18	ENSMUST00000229552.2	2933	3	0	-9	0	0	multi-exon	FALSE	canonical	3	306	junction_1	231.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGTGTGTCTGCTT	3722	False	NA	-1	True	AATAAA	-24	NA	76535028	76531126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76531969_76532298_76532511_76533140
ES_00020546	chr15	-	6302	13	Fusion	ENSMUSG00000033697.17_ENSMUSG00000116138.2	novel	4500	12	NA	NA	0	-1	multi-exon	FALSE	canonical	3	26	junction_7	16.8176494592239	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTCTATTGACTTTAAA	8256	False	NA	-7	True	ATTAAA	-20	NA	76702283	76605667	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr15_-_76607184_76607370_76607420_76607854_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ES_00020547	chr15	-	700	1	FSM	ENSMUSG00000116138.2	ENSMUST00000230372.2	2364	1	0	1664	0	-188	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTACCCTTCAGGGCC	9309	False	NA	NA	False	NA	NA	NA	76608040	76607340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76607300_76608000
ES_00020548	chr15	-	6720	14	NNC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	0	136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	54.7017734965571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGGCAGCAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	77190805	76963053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982283_76983437_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
ES_00020549	chr15	-	201	1	Intergenic	novelGene_1406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGGAGCTGGGGGTTCT	542	False	NA	NA	False	NA	NA	NA	77257128	77256927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_77256900_77257100
ES_00020550	chr15	-	281	1	FSM	ENSMUSG00000084497.3	ENSMUST00000122548.3	100	1	5	-186	5	186	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGACCAAGTGAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	77724951	77724670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77724700_77725000
ES_00020551	chr15	-	208	2	Intergenic	novelGene_1408	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAGGTTAAA	5	True	NA	NA	False	NA	NA	NA	77755268	77730111	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_77730266_77755214
ES_00020553	chr15	-	3181	2	FSM	ENSMUSG00000016552.14	ENSMUST00000140096.2	3177	2	0	-4	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCTGGCATTTTGG	8486	False	NA	2	True	AATAAA	-23	NA	77830088	77824721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77827593_77829778
ES_00020555	chr15	-	590	6	FSM	ENSMUSG00000016554.10	ENSMUST00000229413.2	590	6	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	140.106245399697	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTCCTAGCAACTCCA	5035	False	NA	NA	False	NA	NA	NA	77852723	77849034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656
ES_00020556	chr15	-	1926	9	Fusion	ENSMUSG00000115867.2_ENSMUSG00000033055.13	novel	1904	8	NA	NA	0	28	multi-exon	FALSE	non_canonical	0	0	junction_1	37.1878676452415	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTCCCAGTCTCTGGGC	NA	False	NA	NA	False	NA	NA	NA	78947085	78899500	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr15_-_78899529_78937299_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
ES_00020557	chr15	-	234	1	FSM	ENSMUSG00000116262.2	ENSMUST00000230293.2	2157	1	216	1707	216	-1707	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCGGCACATTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	78912596	78912362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78912400_78912600
ES_00020558	chr15	-	201	2	Intergenic	novelGene_1415	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	935	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGTGAATATGATAAAGAT	1576	False	NA	NA	False	NA	NA	NA	79027573	78971893	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_78972043_79027521
ES_00020559	chr15	-	680	6	FSM	ENSMUSG00000033029.13	ENSMUST00000190730.7	691	6	11	0	7	0	multi-exon	FALSE	canonical	2	4	junction_1	2.56124969497314	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGGCTTTGTCCTGTGGC	3726	False	NA	NA	False	GGGGCT	-19	NA	79025423	79019216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79023437_79023501_79025080_79025193_79025354
ES_00020560	chr15	-	3067	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	14	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	53.1124617556935	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACAGTGTGTGCCATTG	NA	False	NA	-5	True	AATAAA	-21	NA	79212362	79170422	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
ES_00020565	chr15	-	2738	12	NNC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	0	1905	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	162.650261106512	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTTAAAACAGGACAGGG	8153	False	NA	NA	False	AAAAAG	-5	NA	79326203	79300150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79300191_79302059_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
ES_00020567	chr15	-	2726	9	NIC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	60	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	217.31684098339	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGCGTTTCTTAAG	8079	False	NA	0	True	AATAAA	-15	NA	79326277	79306680	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
ES_00020569	chr15	-	4732	13	FSM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.6714930502203	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79414719_79415872_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ES_00020570	chr15	-	4494	2	ISM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	13326	26	13140	-26	3prime_fragment	FALSE	canonical	3	60	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTATAAATAAATACTTGAC	NA	False	NA	-66	True	NA	NA	NA	79417616	79411962	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_79414719_79415878
ES_00020571	chr15	-	1931	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAATATAAGACTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	79489300	79445811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ES_00020572	chr15	-	3769	18	FSM	ENSMUSG00000042524.15	ENSMUST00000100439.10	3768	18	0	-1	0	0	multi-exon	TRUE	canonical	0	0	junction_6	1.19108569007745	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGAGTGTGCTTTTTTCTG	NA	False	NA	0	True	AATAAA	-16	NA	79626705	79608270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613681_79613760_79614290_79614546_79618308_79618437_79620046_79620121_79621266_79621361_79621673_79621770_79622720_79622862_79623020_79623212_79623921_79624083_79626539
ES_00020574	chr15	-	523	5	FSM	ENSMUSG00000089715.13	ENSMUST00000127721.8	546	5	23	0	-22	0	multi-exon	FALSE	canonical	1	2	junction_1	65.9445790038878	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCCAATTTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	79718503	79716772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79716959_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ES_00020575	chr15	-	3106	6	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	19	junction_1	175.182875875469	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	-7	True	ATTAAA	-24	NA	79816837	79800007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79802675_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ES_00020578	chr15	-	2699	7	FSM	ENSMUSG00000000489.8	ENSMUST00000000500.8	2944	7	245	0	245	0	multi-exon	FALSE	canonical	2	5	junction_6	4.63381292481928	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79898764	79880074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79898136
ES_00020580	chr15	-	881	1	FSM	ENSMUSG00000116127.2	ENSMUST00000229937.2	797	1	17	-101	17	101	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCATGTGTGTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	80114107	80113226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_80113200_80114100
ES_00020581	chr15	-	844	5	NNC	ENSMUSG00000051518.9	novel	525	5	NA	NA	0	17984	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.469605449021	5032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGAAGCCTGTTGCAT	NA	False	NA	NA	False	NA	NA	NA	80148485	80126831	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_80126873_80144819_80145332_80145497_80145596_80148183_80148319_80148427
ES_00020583	chr15	-	220	1	Intergenic	novelGene_1432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	731	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAGAAATCAACTAGGCA	NA	False	NA	NA	False	NA	NA	NA	80885416	80885196	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_80885200_80885400
ES_00020586	chr15	-	1712	10	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	0	19611	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.949673587668	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTCAATGTCTCACAGA	6887	False	NA	NA	False	NA	NA	NA	81244974	81183500	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81183530_81203113_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ES_00020587	chr15	-	3067	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-142	64369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTCAATGTCTCACAGA	NA	False	NA	NA	False	NA	NA	NA	81283937	81183500	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81183528_81247868_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ES_00020588	chr15	-	3069	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-142	64369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTCAATGTCTCACAGA	NA	False	NA	NA	False	NA	NA	NA	81283937	81183500	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81183531_81247869_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ES_00020593	chr15	-	1410	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	-119	0	-31	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845162	81835308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ES_00020594	chr15	-	1281	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	0	4108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCCAGGGCTGGAGAGAT	4925	False	NA	NA	False	NA	NA	NA	81931780	81920617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81920653_81925537_81926570_81928097_81928219_81931687
ES_00020595	chr15	-	1280	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	0	4108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCCAGGGCTGGAGAGAT	4925	False	NA	NA	False	NA	NA	NA	81931780	81920617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81920652_81925537_81926570_81928097_81928219_81931687
ES_00020596	chr15	-	943	7	NNC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-11	13645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.743089124399	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCCCGAAACAAAACTGAAA	NA	False	NA	NA	False	NA	NA	NA	82128960	82104334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82104362_82118276_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ES_00020598	chr15	-	1884	11	NNC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	0	75830	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.1962876230757	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAAAAAGTTGACTC	1388	False	NA	NA	False	NA	NA	NA	82222983	82137902	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82137931_82213745_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ES_00020604	chr15	-	1747	4	NIC	ENSMUSG00000041852.16	novel	7417	5	NA	NA	48	-11	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	61.3568795382121	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTTTTCATTTACTCT	9216	False	NA	-16	True	AATAAA	-17	NA	82783964	82692647	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_82693989_82699811_82699862_82709431_82709526_82783702
ES_00020606	chr15	-	2606	16	NNC	ENSMUSG00000054277.9	novel	2461	16	NA	NA	15	2	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_5	13.8381116245438	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTGTGTTGTCATT	3540	False	NA	-24	True	AATATA	-18	NA	83234433	83183937	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194583_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208355_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ES_00020608	chr15	-	6191	3	NIC	ENSMUSG00000075511.10	novel	1260	4	NA	NA	10	203	intron_retention	FALSE	canonical	1	1	junction_2	13.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAAGTAAGCTCACC	260	False	NA	NA	False	AATAAA	-21	NA	83251468	83237844	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_83243152_83249229_83249715_83251069
ES_00020609	chr15	-	3107	11	FSM	ENSMUSG00000016664.17	ENSMUST00000231184.2	3103	11	0	-4	0	0	multi-exon	FALSE	canonical	3	32	junction_10	180.758512939225	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGCATCCACCCTCAT	NA	False	NA	4	True	AATAAA	-31	NA	83317025	83260318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316952
ES_00020610	chr15	-	2040	13	NNC	ENSMUSG00000022442.17	novel	2060	12	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	1	11	junction_1	17.96292478041	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395094	83367969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83368155_83368174_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
ES_00020611	chr15	-	4829	6	NIC	ENSMUSG00000018865.10	novel	2383	7	NA	NA	4	-9	intron_retention	FALSE	canonical	3	68	junction_1	7.23878442834154	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTGTTTGTGTGTTTTG	NA	False	NA	-10	True	AATAAA	-8	NA	83989806	83960306	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ES_00020612	chr15	-	307	1	FSM	ENSMUSG00000116041.2	ENSMUST00000229976.2	307	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAACTTCATAAGCTGCT	NA	False	NA	NA	False	NA	NA	NA	84067216	84066909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_84066900_84067200
ES_00020613	chr15	-	2568	12	FSM	ENSMUSG00000016624.16	ENSMUST00000162044.8	2568	12	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	2.56163687338279	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCCATATTTGCAGGGAG	NA	False	NA	NA	False	NA	NA	NA	84739952	84670334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_84671651_84675265_84675370_84675554_84675631_84675983_84676143_84679280_84679336_84681523_84681601_84682843_84682896_84687654_84687787_84688960_84689312_84692266_84692360_84738939_84739006_84739865
ES_00020617	chr15	-	3861	24	NIC	ENSMUSG00000022432.8	novel	4047	25	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_15	32.4523789545692	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTACTCTGGTCTTGT	NA	False	NA	-6	True	TATAAA	-17	NA	85016165	84948889	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
ES_00020618	chr15	-	3130	4	FSM	ENSMUSG00000022382.16	ENSMUST00000109424.4	3134	4	0	4	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.86744175568088	1637	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGTGTGTGTGACGTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	85465783	85419641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_85422070_85427869_85428142_85443103_85443331_85465580
ES_00020621	chr15	-	6803	34	FSM	ENSMUSG00000016028.12	ENSMUST00000226840.2	6802	34	0	-1	0	0	multi-exon	TRUE	canonical	3	17	junction_3	10.9215417163463	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGCTGGGTGGT	NA	False	NA	-5	True	AATAAA	-21	NA	85862931	85783129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_85784940_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802
ES_00020622	chr15	-	12687	35	NIC	ENSMUSG00000016028.12	novel	11305	35	NA	NA	-1349	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_34	10.511527697384	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGCTGGGTGGT	NA	False	NA	-5	True	AATAAA	-21	NA	85919753	85783129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_85784940_85785137_85785400_85785639_85785874_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ES_00020623	chr15	-	3397	8	FSM	ENSMUSG00000035891.17	ENSMUST00000156546.2	2162	8	-31	-1204	-31	11	multi-exon	TRUE	canonical	3	9	junction_7	5.62429133857986	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCCTCATTTACAAGTTC	NA	False	NA	-2	True	AATAAA	-29	NA	86036680	86023317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86036605
ES_00020624	chr15	-	1557	3	NNC	ENSMUSG00000035891.17	novel	2162	8	NA	NA	8759	-20	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGGCCTACACAGCTT	6302	False	NA	NA	False	TATAAA	-15	NA	86027890	86024541	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_86025814_86026882_86027092_86027814
ES_00020626	chr15	-	221	2	Intergenic	novelGene_1455	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	524	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGGCTGGTGAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	88604794	88555467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_88555495_88604600
ES_00020627	chr15	-	2053	6	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	8041	-2	at_least_one_novel_splicesite	TRUE	canonical	2	47	junction_5	235.264446952785	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTTGTCCCGTGTTTG	NA	False	NA	-7	True	NA	NA	NA	88577026	88571238	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88576947
ES_00020629	chr15	-	5087	13	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	376	-2	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_12	199.791071427685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTTGTCCCGTGTTTG	NA	False	NA	-7	True	NA	NA	NA	88618057	88571238	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88617815
ES_00020630	chr15	-	2578	8	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	-7480	-9	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	280.145588971892	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTAGTTTTTGTCCC	7662	False	NA	-14	True	NA	NA	NA	88592547	88571245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572680_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88592298
ES_00020631	chr15	-	5120	13	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	16	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	246.313316732977	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTAGTTTTTGTCCC	NA	False	NA	-14	True	NA	NA	NA	88618417	88571245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572680_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ES_00020632	chr15	-	5035	14	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	15	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	230.695603639214	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTAGTTTTTGTCCC	NA	False	NA	-14	True	NA	NA	NA	88618418	88571245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88596968_88597057_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ES_00020634	chr15	-	1203	2	NNC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	310	-6	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTACATTTCCAATGTGT	NA	False	NA	-9	True	NA	NA	NA	88775376	88773988	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88775099_88775283
ES_00020637	chr15	-	2646	19	NIC	ENSMUSG00000062906.13	novel	2376	20	NA	NA	0	3	intron_retention	FALSE	canonical	3	26	junction_3	4.86642566628034	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTGTCTCCGTTACTGA	NA	False	NA	0	True	AATAAA	-20	NA	89012856	89007506	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
ES_00020638	chr15	-	4585	20	FSM	ENSMUSG00000015377.11	ENSMUST00000078953.9	4585	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_9	20.4859251730037	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTCTTTTAATATTTT	NA	False	NA	1	True	ATTAAA	-22	NA	89080651	89066415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071254_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
ES_00020640	chr15	-	796	5	FSM	ENSMUSG00000036529.18	ENSMUST00000124398.2	796	5	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_2	8.9162772500635	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCGCCGTTTCCGGACCT	7587	False	NA	NA	False	NA	NA	NA	89179854	89178203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597
ES_00020644	chr15	-	1253	2	FSM	ENSMUSG00000091780.4	ENSMUST00000228977.2	1250	2	0	-3	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258049	89255839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89256669_89257625
ES_00020645	chr15	-	218	1	FSM	ENSMUSG00000047394.10	ENSMUST00000227854.2	1076	1	387	471	246	29	mono-exon	FALSE	NA	NA	NA	NA	NA	607	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCTCCTCGGCATACCAT	NA	False	NA	NA	False	NA	NA	NA	89262819	89262601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89262600_89262800
ES_00020646	chr15	-	452	3	FSM	ENSMUSG00000078938.10	ENSMUST00000109314.9	448	3	0	-4	0	4	multi-exon	FALSE	canonical	3	12	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGGACCCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-17	NA	89294466	89274372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89274643_89281528_89281638_89294393
ES_00020647	chr15	-	1265	11	NNC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_8	106.87300875338	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGACATTCTGTTGA	1649	False	NA	NA	False	AATAAA	-36	NA	89313633	89310556	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312762_89312916_89313031_89313251_89313361_89313579
ES_00020648	chr15	-	1754	11	NNC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	127.11211586627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1167	False	NA	NA	False	AATAAA	-30	NA	89314115	89310562	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_89310865_89311013_89311096_89311526_89311658_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ES_00020650	chr15	-	2455	3	FSM	ENSMUSG00000022617.16	ENSMUST00000165623.2	2455	3	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_1	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAAAGGAAAA	1171	False	NA	NA	False	NA	NA	NA	89314111	89311317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89312219_89312336_89313031_89313251
ES_00020651	chr15	-	2699	7	FSM	ENSMUSG00000022620.15	ENSMUST00000023292.9	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	9.42809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAATAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	89360316	89356730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89359209_89359324_89359566_89359710
ES_00020652	chr15	-	6616	8	FSM	ENSMUSG00000036197.17	ENSMUST00000057896.5	1891	8	1	-4726	1	13	multi-exon	FALSE	canonical	3	19	junction_7	17.2827624398133	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTACCAGGC	NA	False	NA	3	True	AATAAA	-26	NA	93173031	93137609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_93143011_93145739_93145913_93146239_93146364_93152181_93152434_93156945_93157072_93159627_93159800_93163751_93163845_93172756
ES_00020655	chr15	-	1471	3	FSM	ENSMUSG00000033356.4	ENSMUST00000147832.2	1471	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAGAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	94441374	94434039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_94434555_94437933_94438856_94441340
ES_00020656	chr15	-	456	4	FSM	ENSMUSG00000022451.13	ENSMUST00000152590.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	243.086175848996	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTCCCCTGCCCCGCTG	NA	False	NA	NA	False	TATAAA	-17	NA	94487770	94482323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_94482367_94483328_94483425_94484238_94484418_94487632
ES_00020657	chr15	-	889	3	FSM	ENSMUSG00000045608.8	ENSMUST00000229611.2	477	3	-44	-368	-44	368	multi-exon	FALSE	canonical	2	7	junction_2	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCTCTCCAAGTTTTAT	NA	False	NA	-11	True	ATTAAA	-16	NA	95530753	95522250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_95522899_95530158_95530347_95530700
ES_00020658	chr15	-	7800	16	NNC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	0	3563	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	97.3652002628363	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATCCATGTTACCCTT	NA	False	NA	NA	False	NA	NA	NA	96358724	96306016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_96306052_96309585_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ES_00020659	chr15	-	7893	16	NNC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	-141	3563	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.7122956807293	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATCCATGTTACCCTT	NA	False	NA	NA	False	NA	NA	NA	96358865	96306016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_96306052_96309585_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ES_00020660	chr15	-	222	1	ISM	ENSMUSG00000033228.9	ENSMUST00000227133.2	2599	2	10573	266	-3655	-266	mono-exon	FALSE	NA	NA	NA	NA	NA	408	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCATTTCATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	96348108	96347886	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_96347900_96348100
ES_00020661	chr15	-	3183	16	FSM	ENSMUSG00000023169.16	ENSMUST00000100262.4	3183	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_15	98.2259074220691	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGGTTTGTTTCCCTC	NA	False	NA	-3	True	ATTAAA	-24	NA	96539843	96473867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
ES_00020662	chr15	-	6116	10	FSM	ENSMUSG00000022462.8	ENSMUST00000229141.2	6116	10	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_2	23.0506688261606	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATACTTTAAAAGACC	992	False	NA	-105	True	AATACA	-16	NA	96596572	96587545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96596145_96596495
ES_00020663	chr15	-	3933	15	FSM	ENSMUSG00000022464.15	ENSMUST00000231039.2	3923	15	0	-10	0	10	multi-exon	FALSE	canonical	3	1416	junction_8	96.7698721879145	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCGTGAGTTATTTG	NA	False	NA	1	True	AATAAA	-29	NA	96917832	96892690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604
ES_00020664	chr15	-	888	2	Intergenic	novelGene_1469	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	5	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTCTAGAATTTGTC	1455	False	NA	1	True	AATACA	-25	NA	97029758	97026296	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_97027102_97029675
ES_00020665	chr15	-	273	1	Genic_Genomic	ENSMUSG00000116295.2	novel	NA	NA	NA	NA	9973	52	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGCTAAAGGGATCTG	823	False	NA	NA	False	NA	NA	NA	97055130	97054857	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_-_97054900_97055100
ES_00020666	chr15	-	1612	3	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-28	945	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTGCTTGCTTGCT	NA	False	NA	-1	True	NA	NA	NA	97065153	97057868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_97059277_97064383_97064492_97065057
ES_00020667	chr15	-	370	3	Intergenic	novelGene_1473	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	3.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAATTTTGTATTCAG	NA	False	NA	NA	False	NA	NA	NA	97302496	97299683	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_97299826_97301709_97301808_97302366
ES_00020668	chr15	-	3751	28	FSM	ENSMUSG00000022469.18	ENSMUST00000129223.9	3750	28	0	-1	0	1	multi-exon	TRUE	canonical	3	6	junction_8	10.6521248612827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTTCTACCGCCTGG	227	False	NA	-17	True	CATAAA	-14	NA	97665679	97642832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648036_97648140_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642_97664856_97665275
ES_00020671	chr15	-	4286	41	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	9482	0	4290	0	intron_retention	FALSE	canonical	1	1	junction_18	3.247691487811	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGACTTGTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-31	NA	97893056	97873482	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_97874068_97874522_97874766_97875062_97875251_97875601_97875891_97876218_97876327_97876758_97876813_97877045_97877154_97877265_97877320_97877512_97877621_97877755_97877810_97878026_97878135_97878328_97878437_97878605_97878768_97879395_97879450_97879884_97879939_97880409_97880518_97880796_97880851_97881118_97881173_97881532_97881587_97881841_97881896_97882242_97882351_97882600_97882700_97882884_97882930_97883162_97883217_97883443_97883498_97883743_97883798_97884188_97884243_97884622_97884722_97885173_97885228_97885365_97885465_97885548_97885603_97885964_97886073_97886443_97886498_97886642_97886742_97886828_97886874_97887166_97887266_97888793_97888848_97889224_97889270_97891897_97891952_97892424_97892470_97892748
ES_00020672	chr15	-	4886	10	FSM	ENSMUSG00000033075.18	ENSMUST00000181855.8	4886	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	42.5826719525359	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGCGGGCCCTTTCAC	1937	False	NA	-4	True	AATAAA	-13	NA	97962118	97939112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830
ES_00020673	chr15	-	3990	19	NIC	ENSMUSG00000033075.18	novel	3882	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_10	47.9875562573836	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGCGGGCCCTTTCAC	6143	False	NA	-4	True	AATAAA	-13	NA	97991450	97939112	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
ES_00020674	chr15	-	2123	2	FSM	ENSMUSG00000033075.18	ENSMUST00000180531.2	1270	2	-264	-589	0	589	multi-exon	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGGTCTTGGTGTCTGTT	6143	False	NA	NA	False	NA	NA	NA	97991450	97985848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97987685_97991163
ES_00020676	chr15	-	6356	10	NNC	ENSMUSG00000011960.13	novel	7397	10	NA	NA	0	1	intron_retention	FALSE	canonical	1	1	junction_1	15.0415063600773	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTTTGTATGTTCCGTG	NA	False	NA	NA	False	AATAAA	-23	NA	98465561	98436568	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_98440250_98440635_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ES_00020677	chr15	-	464	6	FSM	ENSMUSG00000011960.13	ENSMUST00000164565.8	465	6	0	1	0	-1	multi-exon	FALSE	canonical	3	38	junction_1	3.26190128606002	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTCCTCTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	98465426	98446533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ES_00020679	chr15	-	3640	6	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	-19	63134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.430689701131	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAACGGAGCCCCGGATG	1777	False	NA	NA	False	NA	NA	NA	98661114	98571380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_98571424_98635505_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ES_00020681	chr15	-	234	2	Intergenic	novelGene_1479	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTGAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	98714462	98667768	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_98667883_98714342
ES_00020682	chr15	-	862	8	FSM	ENSMUSG00000067713.8	ENSMUST00000229544.2	862	8	0	0	0	0	multi-exon	FALSE	canonical	3	338	junction_2	20.3880717427557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGCCCTGAGCATGGG	NA	False	NA	NA	False	NA	NA	NA	98713592	98711266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713241_98713377_98713437_98713539
ES_00020684	chr15	-	19805	55	FSM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	0	0	0	0	multi-exon	TRUE	canonical	1	7	junction_3	56.624630377885	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTCTGTCCCATGACCC	9492	False	NA	NA	False	NA	NA	NA	98769064	98729549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98732474_98732596_98732706_98732788_98732863_98733062_98733349_98734955_98735087_98735175_98735313_98737157_98738299_98738441_98738570_98738642_98738776_98739290_98739422_98739619_98739796_98739908_98739985_98740623_98740784_98740939_98741108_98741232_98741374_98741475_98744428_98744523_98744757_98744854_98744922_98745018_98745104_98745238_98745363_98747100_98749083_98749275_98749413_98749487_98749671_98749771_98751587_98751670_98751722_98751913_98751988_98752063_98752306_98752411_98752497_98752594_98752733_98752905_98753017_98753190_98753257_98753415_98753563_98753644_98753780_98753958_98754064_98754150_98754271_98754487_98754710_98755268_98755317_98755405_98755516_98755602_98755768_98755922_98756105_98757390_98757496_98758514_98758626_98758931_98759046_98759482_98760565_98760656_98762091_98762226_98762373_98762529_98762688_98762814_98762930_98763008_98763175_98763381_98763545_98763669_98763780_98763876_98764101_98764256_98764384_98764552_98764639_98768894
ES_00020685	chr15	-	1038	8	FSM	ENSMUSG00000023755.11	ENSMUST00000147015.2	1038	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	64.8753907620649	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGTAGCCTGGATGTT	NA	False	NA	NA	False	NA	NA	NA	98778971	98775926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
ES_00020686	chr15	-	4180	3	FSM	ENSMUSG00000023000.6	ENSMUST00000023737.6	4242	3	24	38	-10	-38	multi-exon	FALSE	canonical	0	0	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCCGGCCACAAATAAATC	7705	False	NA	NA	False	NA	NA	NA	98796397	98789070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98792442_98792693_98792956_98795850
ES_00020689	chr15	-	4276	1	FSM	ENSMUSG00000037525.6	ENSMUST00000229827.2	4628	1	351	1	351	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGCTGTGTCGTTTCTTT	NA	False	NA	-3	True	ATTAAA	-16	NA	99372238	99367962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99368000_99372200
ES_00020690	chr15	-	2882	18	NNC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	0	37659	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.075638004279	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	99549463	99480717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_99480745_99518381_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
ES_00020691	chr15	-	2986	18	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	197.839524637143	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGATGTTGGTTTTCTTG	NA	False	NA	-2	True	AATAAA	-18	NA	99549489	99518378	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541302_99541405_99549387
ES_00020693	chr15	-	4235	12	NNC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	0	71998	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	279.930186101658	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCTAAGCTTCAATTT	7278	False	NA	NA	False	NA	NA	NA	99773297	99604352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_99604385_99676350_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
ES_00020694	chr15	-	447	4	FSM	ENSMUSG00000023021.16	ENSMUST00000176627.3	447	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	132.433631176777	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCACTTATTATTTATGT	NA	False	NA	NA	False	NA	NA	NA	99669973	99643822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99643828_99644917_99645049_99649116_99649223_99669768
ES_00020695	chr15	-	307	2	FSM	ENSMUSG00000023022.15	ENSMUST00000230033.2	405	2	0	98	0	-98	multi-exon	FALSE	canonical	3	692	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGAGTTCAAGACCAGC	6832	False	NA	NA	False	NA	NA	NA	99700014	99694396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_99694681_99699991
ES_00020696	chr15	-	681	2	Antisense	novelGene_ENSMUSG00000090500.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	659	junction_1	0	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99749318	99719877	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_99720511_99749270
ES_00020700	chr15	-	3456	15	ISM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	221	53	0	-4	3prime_fragment	FALSE	canonical	3	68	junction_1	18.1805008799235	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTTTTGGTTCTTGTT	NA	False	NA	-3	True	AATAAA	-18	NA	100449668	100400680	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
ES_00020701	chr15	-	4910	11	FSM	ENSMUSG00000009739.18	ENSMUST00000073837.13	4953	11	43	0	43	0	multi-exon	FALSE	canonical	1	1	junction_8	17.6751237619429	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTGCCTATTTTGTTG	NA	False	NA	0	True	AATAAA	-21	NA	100497822	100473198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100476500_100477756_100477926_100478690_100478833_100481108_100481313_100481911_100482041_100483755_100484010_100484524_100484654_100485669_100485787_100489721_100489915_100491853_100491947_100497643
ES_00020704	chr15	-	302	1	FSM	ENSMUSG00000116164.2	ENSMUST00000230712.2	671	1	274	95	274	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTGCCACTGAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	100511450	100511148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100511100_100511400
ES_00020705	chr15	-	920	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTTGTTTGATCTGA	NA	False	NA	-94	True	NA	NA	NA	100534821	100519329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
ES_00020710	chr15	-	2666	10	FSM	ENSMUSG00000036966.16	ENSMUST00000139279.8	2666	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.7142251301576	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044627	102024962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102039226_102040302_102040379_102041850_102041998_102044570
ES_00020711	chr15	-	2160	15	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	34.0377941202339	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	6777	False	NA	NA	False	AATAAA	-17	NA	102112183	102085433	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102112130
ES_00020712	chr15	-	2362	17	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-24	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	39.7570257155889	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTATGTTTTAAAGCT	6777	False	NA	NA	False	AATAAA	-19	NA	102112183	102085431	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102111571_102111696_102112130
ES_00020721	chr15	-	994	6	NIC	ENSMUSG00000009575.15	novel	1146	6	NA	NA	0	-198	combination_of_known_splicesites	FALSE	canonical	3	31	junction_5	201.842512865848	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTGAACGTCAGGCAT	NA	False	NA	1	True	AATATA	-26	NA	103148243	103107879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103148159
ES_00020730	chr15	+	207	1	Intergenic	novelGene_1356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTATTTAAATGCTTC	NA	False	NA	NA	False	NA	NA	NA	34042542	34042749	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_34042500_34042700
ES_00020731	chr15	+	213	1	Intergenic	novelGene_1357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGACACTGCATCTCTA	NA	False	NA	NA	False	NA	NA	NA	34431216	34431429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_34431200_34431400
ES_00020732	chr15	+	209	1	Intergenic	novelGene_1360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAAGTACTCTTAAAACT	3414	False	NA	NA	False	NA	NA	NA	37011020	37011229	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_37011000_37011200
ES_00020735	chr15	+	206	1	Intergenic	novelGene_1364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATGTCTTATTTTCACA	NA	False	NA	NA	False	NA	NA	NA	37173111	37173317	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_37173100_37173300
ES_00020736	chr15	+	885	1	Intergenic	novelGene_1368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGGGCAGGTCACTG	NA	False	NA	NA	False	AAGAAA	-41	NA	41893779	41894664	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_41893800_41894700
ES_00020738	chr15	+	217	1	Intergenic	novelGene_1389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGATGGCCAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	69347757	69347974	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_69347800_69348000
ES_00020739	chr15	+	726	1	Intergenic	novelGene_1391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGACATTCCATTATT	NA	False	NA	NA	False	TTTAAA	-41	NA	72089909	72090635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_72089900_72090600
ES_00020741	chr15	+	215	1	Intergenic	novelGene_1401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTATAGTATTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	76454524	76454739	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_76454500_76454700
ES_00020742	chr15	+	210	1	Intergenic	novelGene_1405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCAGGCATGGTGGTACA	NA	False	NA	NA	False	NA	NA	NA	77146801	77147011	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_77146800_77147000
ES_00020743	chr15	+	321	1	Intergenic	novelGene_1410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGCTTTCTCTTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	78705970	78706291	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_78706000_78706300
ES_00020744	chr15	+	219	1	Intergenic	novelGene_1416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGAGTTGGTAATGCC	NA	False	NA	NA	False	NA	NA	NA	79159129	79159348	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79159100_79159300
ES_00020746	chr15	+	211	1	Intergenic	novelGene_1419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTACTTAGTTGTGATAAAA	NA	False	NA	NA	False	NA	NA	NA	79480201	79480412	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79480200_79480400
ES_00020748	chr15	+	205	1	Intergenic	novelGene_1424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGGCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	79807092	79807297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79807100_79807300
ES_00020749	chr15	+	288	1	Intergenic	novelGene_1427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCAGCCCCGCATAGTG	NA	False	NA	NA	False	NA	NA	NA	80052902	80053190	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_80052900_80053200
ES_00020750	chr15	+	208	1	Intergenic	novelGene_1429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGCATCACAGCCACAT	NA	False	NA	NA	False	NA	NA	NA	80780183	80780391	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_80780200_80780400
ES_00020751	chr15	+	215	1	Intergenic	novelGene_1431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCACCTTTTGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	80872211	80872426	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_80872200_80872400
ES_00020753	chr15	+	212	1	Intergenic	novelGene_1443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTTACTTTCAAAATCC	NA	False	NA	NA	False	NA	NA	NA	82757536	82757748	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_82757500_82757700
ES_00020754	chr15	+	259	1	Intergenic	novelGene_1449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	625	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAGAGGCCCACGATAT	NA	False	NA	NA	False	AATAAA	-37	NA	84998145	84998404	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_84998100_84998400
ES_00020755	chr15	+	207	1	Intergenic	novelGene_1451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAAAAGGTCAGAGGC	9355	False	NA	NA	False	NA	NA	NA	85733192	85733399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_85733200_85733400
ES_00020756	chr15	+	274	1	Intergenic	novelGene_1457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTAAAAACAAAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	89318182	89318456	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_89318200_89318500
ES_00020757	chr15	+	246	1	Intergenic	novelGene_1462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93144321	93144567	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_93144300_93144600
ES_00020759	chr15	+	203	1	Intergenic	novelGene_1464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTCTTTTTGATTGC	371	False	NA	NA	False	NA	NA	NA	93433313	93433516	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_93433300_93433500
ES_00020760	chr15	+	205	1	Intergenic	novelGene_1466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTAAATTCTTAGTCCT	NA	False	NA	NA	False	NA	NA	NA	96219012	96219217	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_96219000_96219200
ES_00020761	chr15	+	202	1	Intergenic	novelGene_1467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAGTCATGTTTCAGAA	NA	False	NA	37	True	NA	NA	NA	97024525	97024727	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_97024500_97024700
ES_00020762	chr15	+	449	1	Intergenic	novelGene_1475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	271	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCTGTAATAATACTTAAAT	NA	False	NA	NA	False	NA	NA	NA	98044402	98044851	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_98044400_98044900
ES_00020763	chr15	+	206	1	Intergenic	novelGene_1478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCTTAATGGGGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	98615982	98616188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_98616000_98616200
ES_00020764	chr15	+	677	1	Intergenic	novelGene_1480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAACTCAATTCAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	98804385	98805062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_98804400_98805100
ES_00020765	chr15	+	260	1	Intergenic	novelGene_1486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAGAGGCAGGCAGAG	NA	False	NA	NA	False	TTTAAA	-44	NA	99942212	99942472	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_99942200_99942500
ES_00020766	chr15	+	201	1	Intergenic	novelGene_1487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATGCAGATCTATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99947959	99948160	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_99948000_99948200
ES_00020767	chr15	+	222	1	Intergenic	novelGene_1488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTCAGGACATAATTGAT	NA	False	NA	NA	False	NA	NA	NA	100537420	100537642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_100537400_100537600
ES_00020768	chr15	+	2095	1	Intergenic	novelGene_1489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAACTGTGAGTCAGTAA	2093	False	NA	-1	True	AATGAA	-7	NA	101131030	101133125	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_101131000_101133100
ES_00020776	chr15	+	612	1	FSM	ENSMUSG00000115843.2	ENSMUST00000227989.2	576	1	-1	-35	-1	35	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAC	NA	False	NA	NA	False	AATAAA	-32	NA	3959465	3960077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_3959500_3960100
ES_00020777	chr15	+	720	1	FSM	ENSMUSG00000115116.2	ENSMUST00000226389.2	742	1	20	2	20	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTTCTCTCATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	5493675	5494395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_5493700_5494400
ES_00020778	chr15	+	1377	10	FSM	ENSMUSG00000022150.17	ENSMUST00000160134.8	1374	10	-3	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.71115434484284	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCTTTCTTGTGATGAA	8292	False	NA	NA	False	ATTAAA	-14	NA	6416256	6457246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6456811
ES_00020779	chr15	+	9474	39	NNC	ENSMUSG00000050310.10	novel	9312	38	NA	NA	-86	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_31	27.7495227180637	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGTGTTGACATT	NA	False	NA	6	True	AATAAA	-21	NA	6737773	6829882	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532_6794601_6797534_6797618_6798726_6798815_6799225_6799317_6799408_6799476_6799603_6799685_6801612_6801714_6803289_6803456_6804087_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6817130_6817203_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ES_00020780	chr15	+	204	2	Intergenic	novelGene_1328	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCCCCATAGAGCACAT	NA	False	NA	NA	False	NA	NA	NA	7086604	7089688	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_7086644_7089523
ES_00020785	chr15	+	3351	8	FSM	ENSMUSG00000039458.16	ENSMUST00000071993.13	3351	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	94.4772945403999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGCAAGTTTGGAAGTG	29	False	NA	28	True	ATTAAA	-31	NA	12205170	12272080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_12205366_12230359_12230421_12259704_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
ES_00020786	chr15	+	246	2	Antisense	novelGene_ENSMUSG00000115830.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTAGTTTTTATCTAGAG	NA	False	NA	NA	False	NA	NA	NA	20013481	20042279	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_20013525_20042076
ES_00020787	chr15	+	210	2	Intergenic	novelGene_1350	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTGTCCTGGGTAAAA	2061	False	NA	NA	False	NA	NA	NA	25710326	25718345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_25710377_25718185
ES_00020788	chr15	+	5952	23	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	1866	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	161.809454565476	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	46	False	NA	16	True	AATAAA	-17	NA	25754930	25813759	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_25755172_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ES_00020789	chr15	+	736	5	NNC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	43	-105	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	286.045887927095	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGCACCTGAAAAAGGCA	33	False	NA	11	True	AAGAAA	-2	NA	25774115	25779745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779635
ES_00020790	chr15	+	264	1	FSM	ENSMUSG00000090544.4	ENSMUST00000169678.4	883	1	98	521	98	-521	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGACCAGGTTCAAGGCT	214	False	NA	NA	False	NA	NA	NA	27025511	27025775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_27025500_27025800
ES_00020791	chr15	+	215	1	FSM	ENSMUSG00000090544.4	ENSMUST00000169678.4	883	1	683	-15	683	15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAAAATAAAAGAATTCT	799	False	NA	NA	False	NA	NA	NA	27026096	27026311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_27026100_27026300
ES_00020792	chr15	+	5399	17	ISM	ENSMUSG00000022240.11	ENSMUST00000081728.7	5944	23	473582	-4	-357	4	3prime_fragment	FALSE	canonical	2	8	junction_10	13.4530433359891	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGCCATCTTCCTTTAA	84	False	NA	NA	False	NA	NA	NA	30646320	31029491	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30920857_30920933_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
ES_00020793	chr15	+	1255	5	ISM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	1336	1072	1336	2	3prime_fragment	FALSE	canonical	1	3	junction_1	9.52299847737046	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCGTGACAAGGAGTGTT	1451	False	NA	29	True	ATTAAA	-29	NA	31603599	31617683	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ES_00020794	chr15	+	2185	1	FSM	ENSMUSG00000114995.2	ENSMUST00000227896.2	2064	1	338	-459	338	459	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTACCTTAATTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	31622455	31624640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_31622500_31624600
ES_00020795	chr15	+	345	1	FSM	ENSMUSG00000115276.2	ENSMUST00000228274.2	3745	1	265	3135	265	-3135	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAACCTAAAACATTCCAC	3634	False	NA	NA	False	NA	NA	NA	34127354	34127699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_34127400_34127700
ES_00020800	chr15	+	7252	39	NNC	ENSMUSG00000037646.11	novel	13757	62	NA	NA	0	-48995	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	13.0020241339165	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTGGAACATACTTTTT	166	False	NA	14	True	AATAAA	-15	NA	35371711	35794685	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_35371845_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576527_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450
ES_00020801	chr15	+	2394	2	Antisense	novelGene_ENSMUSG00000115127.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTCCTCAGTGAACCC	NA	False	NA	NA	False	NA	NA	NA	36673113	36681717	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_36673619_36679828
ES_00020802	chr15	+	1814	2	Antisense	novelGene_ENSMUSG00000115127.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTTGGACTTTGGAGTT	NA	False	NA	NA	False	NA	NA	NA	36673505	36681733	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_36673563_36679976
ES_00020803	chr15	+	797	1	FSM	ENSMUSG00000115771.2	ENSMUST00000228698.2	462	1	-51	-284	-51	284	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTAAGTTGTGGGCCA	185	False	NA	NA	False	NA	NA	NA	38079294	38080091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38079300_38080100
ES_00020804	chr15	+	357	1	FSM	ENSMUSG00000115546.2	ENSMUST00000228225.2	1266	1	124	785	124	-785	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCGGTGCCAGAGACGCC	384	False	NA	NA	False	NA	NA	NA	38519153	38519510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_38519200_38519500
ES_00020806	chr15	+	1487	3	ISM	ENSMUSG00000022303.10	ENSMUST00000022913.6	1997	4	8722	4	8710	0	3prime_fragment	FALSE	canonical	3	14	junction_1	5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGCCTTGATCATGTGA	NA	False	NA	6	True	NA	NA	NA	39618049	39624330	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_39618622_39622709_39623019_39623724
ES_00020808	chr15	+	572	4	Intergenic	novelGene_1369	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	5.73488351136175	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTACATTTTTCATTACA	NA	False	NA	NA	False	AATAAA	-13	NA	42811108	42817489	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_42811222_42813764_42813895_42814164_42814368_42817363
ES_00020809	chr15	+	710	1	Genic_Genomic	ENSMUSG00000115730.2	novel	NA	NA	NA	NA	1400	314	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATTTCCTAGGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	44146775	44147485	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_+_44146800_44147500
ES_00020810	chr15	+	767	6	FSM	ENSMUSG00000022338.9	ENSMUST00000226355.2	767	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	386.293670670385	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGAATGAGTTTCAAT	9616	False	NA	1	True	AATAAA	-3	NA	44291487	44299251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44291639_44292955_44293033_44294086_44294191_44295833_44295905_44297249_44297370_44299007
ES_00020811	chr15	+	450	4	FSM	ENSMUSG00000022339.10	ENSMUST00000228648.2	456	4	6	0	-5	0	multi-exon	FALSE	canonical	1	2	junction_1	41.515726605174	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCAGAAAGTAGGTTG	NA	False	NA	NA	False	NA	NA	NA	44482830	44491918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_44482957_44487838_44487937_44490952_44491032_44491771
ES_00020812	chr15	+	502	2	FSM	ENSMUSG00000038622.9	ENSMUST00000228053.2	423	2	-42	-37	-42	37	multi-exon	FALSE	canonical	3	7	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTAGATCTGTTTTTCTA	NA	False	NA	NA	False	AAGAAA	-37	NA	52575761	52578705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_52576083_52578524
ES_00020813	chr15	+	1113	4	FSM	ENSMUSG00000022359.11	ENSMUST00000226955.2	1094	4	-19	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.2103734943259	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAATCTGTGCCCTTTTTT	2675	False	NA	38	True	AATAAA	-28	NA	58004787	58022061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_58004978_58011729_58011838_58014001_58014053_58021297
ES_00020814	chr15	+	1221	5	NIC	ENSMUSG00000022359.11	novel	1383	6	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	21.3131414859471	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2681	False	NA	27	True	AATAAA	-17	NA	58004793	58022050	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_58004978_58011729_58011838_58014001_58014053_58016975_58017101_58021297
ES_00020816	chr15	+	737	1	FSM	ENSMUSG00000037119.5	ENSMUST00000227770.2	737	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTGTACTGTCTATAATC	NA	False	NA	NA	False	NA	NA	NA	58304345	58305082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_58304300_58305100
ES_00020817	chr15	+	1073	1	FSM	ENSMUSG00000098528.2	ENSMUST00000184208.2	1078	1	85	-80	85	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGAAGTGTCTTTGTTGT	NA	False	NA	NA	False	AATGAA	-21	NA	59182786	59183859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_59182800_59183900
ES_00020818	chr15	+	3207	9	NIC	ENSMUSG00000072501.6	novel	3263	9	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	18.1916876622264	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAGTAATGGCTCTAAT	3876	False	NA	NA	False	AATAAA	-10	NA	66449454	66483459	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_66449697_66451921_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374
ES_00020820	chr15	+	640	2	FSM	ENSMUSG00000068391.9	ENSMUST00000137698.2	2114	2	-14	1488	6	-789	multi-exon	FALSE	canonical	3	495	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGGACAGTGCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	72962246	72965135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_72962433_72964681
ES_00020821	chr15	+	5172	24	FSM	ENSMUSG00000036661.15	ENSMUST00000173292.8	5172	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	7.75108992884653	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCCAAGGGCACAGGTTCA	NA	False	NA	NA	False	NA	NA	NA	73384520	73443948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969_73419492_73426905_73427166_73428196_73428368_73429430_73429561_73434173_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73439834_73439963_73440270_73440375_73440456_73440595_73442602
ES_00020822	chr15	+	2091	8	NNC	ENSMUSG00000059895.14	novel	6459	4	NA	NA	-47862	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	50.3579027298292	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGTGTGAAGAGTGTTA	NA	False	NA	19	True	AATAAA	-13	NA	73547131	73629075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_73547205_73547439_73547681_73549310_73549460_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ES_00020823	chr15	+	2744	15	FSM	ENSMUSG00000034730.18	ENSMUST00000185682.7	2744	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.72899891529302	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGTAGTCTTTTTTTT	NA	False	NA	4	True	AATAAA	-16	NA	74435640	74461313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74435731_74435808_74435951_74441717_74441822_74443261_74443365_74443923_74444075_74444655_74444726_74445950_74446018_74447687_74447774_74452413_74452586_74454740_74454837_74456226_74456267_74458605_74459307_74459955_74459992_74460152_74460261_74460535
ES_00020824	chr15	+	2158	10	FSM	ENSMUSG00000034730.18	ENSMUST00000187639.2	2158	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6.47120879047157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTAGTCTTTTTTTTT	NA	False	NA	5	True	AATAAA	-17	NA	74445991	74461314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74446018_74447687_74447774_74449243_74449343_74452413_74452586_74454740_74454837_74456226_74456282_74458605_74459307_74459955_74459992_74460152_74460261_74460535
ES_00020825	chr15	+	1478	5	FSM	ENSMUSG00000022587.15	ENSMUST00000188866.7	2068	5	18	572	-2	0	multi-exon	FALSE	canonical	2	2	junction_1	238.900606947743	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	7803	False	NA	27	True	AATAAA	-15	NA	74826917	74831180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_74827185_74827415_74827567_74829625_74829727_74830117_74830238_74830341
ES_00020826	chr15	+	702	4	NNC	ENSMUSG00000022587.15	novel	1122	4	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.845629979211	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8389	False	NA	27	True	AATAAA	-15	NA	74827503	74831180	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_74827567_74829628_74829727_74830117_74830238_74830759
ES_00020827	chr15	+	674	4	NNC	ENSMUSG00000022587.15	novel	2281	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.10511950161	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGCTATGTCCTGGT	8417	False	NA	24	True	AATAAA	-12	NA	74827531	74831177	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830759
ES_00020828	chr15	+	1080	3	FSM	ENSMUSG00000099034.8	ENSMUST00000183928.8	1459	3	350	29	4	-29	multi-exon	FALSE	canonical	2	3	junction_1	0.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTTTCAATAAATTTAACT	NA	False	NA	NA	False	NA	NA	NA	75514327	75519257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75514361_75517197_75517294_75518306
ES_00020829	chr15	+	2327	1	FSM	ENSMUSG00000103906.2	ENSMUST00000192937.2	4801	1	80	2394	80	-2394	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGAAAGATGCTCTTC	NA	False	NA	NA	False	ATTAAA	-3	NA	75781663	75783990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75781700_75784000
ES_00020830	chr15	+	1885	14	FSM	ENSMUSG00000063704.14	ENSMUST00000089669.6	1931	14	45	1	45	0	multi-exon	TRUE	canonical	0	0	junction_3	1.04909089976814	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGATAAGCCATCTTTC	1900	False	NA	NA	False	AATAAA	-16	NA	75865662	75871002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_75865778_75866693_75866793_75866920_75866951_75867082_75867174_75867675_75867807_75867889_75868054_75868223_75868364_75868959_75869018_75869418_75869557_75869676_75869783_75869907_75870113_75870219_75870324_75870398_75870528_75870627
ES_00020831	chr15	+	528	2	Genic_Genomic	ENSMUSG00000063875.7	novel	747	1	NA	NA	-59292	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	246	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTCTTTAAGAGCAACAA	NA	False	NA	NA	False	NA	NA	NA	76162523	76222562	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_+_76162619_76222129
ES_00020832	chr15	+	1421	7	FSM	ENSMUSG00000071724.6	ENSMUST00000163991.4	1909	7	488	0	-132	0	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGGCTCCCTCCCTCTC	6934	False	NA	NA	False	ATTAAA	-19	NA	76179035	76181096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76179492_76179589_76179663_76179883_76180025_76180094_76180185_76180277_76180342_76180425_76180562_76180635
ES_00020835	chr15	+	550	6	FSM	ENSMUSG00000022558.17	ENSMUST00000160728.8	536	6	-14	0	5	0	multi-exon	FALSE	canonical	1	2	junction_2	30.215227948834	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCCTGGTGGCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	76264717	76286365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76264777_76274230_76274332_76276580_76276660_76278002_76278149_76285775_76285908_76286332
ES_00020837	chr15	+	381	1	FSM	ENSMUSG00000034161.9	ENSMUST00000229271.2	2007	1	1630	-4	1562	4	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCAGACTACCCTCTTG	5610	False	NA	NA	False	ATTAAA	-23	NA	76343281	76343662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76343300_76343700
ES_00020839	chr15	+	1427	2	FSM	ENSMUSG00000022556.12	ENSMUST00000228781.2	1427	2	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATATATATATA	3154	False	NA	18	True	NA	NA	NA	76383671	76385178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76384537_76384616
ES_00020842	chr15	+	1200	5	FSM	ENSMUSG00000022550.19	ENSMUST00000162139.8	1200	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	16.9263108798108	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	1060	False	NA	NA	False	AAGAAA	-1	NA	76478492	76480016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ES_00020844	chr15	+	3009	19	FSM	ENSMUSG00000004187.12	ENSMUST00000230451.2	3009	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.17740818900302	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCGCTCCCCTACTTC	5010	False	NA	NA	False	ATTAAA	-21	NA	76544057	76552053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76544334_76544907_76544966_76545205_76545288_76545435_76545585_76545679_76545819_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76546873_76546981_76547097_76547173_76547284_76548270_76548380_76548481_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ES_00020845	chr15	+	3218	18	FSM	ENSMUSG00000004187.12	ENSMUST00000004294.12	3218	18	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	4.19342045191097	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTGGTGTTTTAA	5718	False	NA	NA	False	ATTAAA	-19	NA	76544765	76552396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76544966_76545205_76545288_76545435_76545585_76545679_76545819_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76546873_76546981_76547097_76547173_76547284_76548270_76548380_76548481_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ES_00020846	chr15	+	3640	16	FSM	ENSMUSG00000004187.12	ENSMUST00000230964.2	3118	16	-70	-452	0	452	multi-exon	FALSE	canonical	2	3	junction_3	4.99332888295307	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGGAGGGGCCAGGAGC	5718	False	NA	NA	False	NA	NA	NA	76544765	76552848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_76544966_76545205_76545288_76545435_76545585_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76547097_76547173_76547284_76548270_76548380_76548481_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ES_00020847	chr15	+	2632	11	NNC	ENSMUSG00000033819.17	novel	2692	11	NA	NA	46	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	37.1752605908822	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555892	76579119	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_76555981_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ES_00020849	chr15	+	3125	17	NNC	ENSMUSG00000033039.11	novel	6712	16	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	13.4994212838921	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTGTCCCAACCAGTT	5954	False	NA	NA	False	NA	NA	NA	78993086	79017490	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_78993630_78998854_78998904_78999229_78999372_79003935_79004028_79004958_79005102_79006746_79007187_79008700_79008759_79009449_79009676_79009729_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
ES_00020850	chr15	+	1429	9	FSM	ENSMUSG00000033039.11	ENSMUST00000229694.2	1907	9	478	0	478	0	multi-exon	FALSE	canonical	3	20	junction_1	8.73212459828649	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCCTGTGTCCCAACCA	4247	False	NA	NA	False	NA	NA	NA	79009729	79017487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
ES_00020852	chr15	+	1705	12	FSM	ENSMUSG00000068206.14	ENSMUST00000166155.2	1699	12	-6	0	-6	0	multi-exon	FALSE	canonical	3	173	junction_8	27.1253594255807	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGGCTGGGGCCAGTGTA	4697	False	NA	NA	False	NA	NA	NA	79113895	79133529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ES_00020854	chr15	+	2339	2	ISM	ENSMUSG00000042622.15	ENSMUST00000163691.3	1902	3	-43	-7	-43	3	intron_retention	FALSE	canonical	3	16	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTATGTCTTGGACTAT	2766	False	NA	25	True	AATAAA	-26	NA	79232220	79243279	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_79232447_79241166
ES_00020855	chr15	+	1902	3	FSM	ENSMUSG00000042622.15	ENSMUST00000163691.3	1902	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGAAGTGTATGTCTT	2809	False	NA	18	True	AATAAA	-19	NA	79232263	79243272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79232447_79241166_79241234_79241620
ES_00020856	chr15	+	203	2	Antisense	novelGene_ENSMUSG00002075011.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCTCATCCTAGCTCCCT	154	False	NA	NA	False	NA	NA	NA	79414998	79498353	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_79415025_79498176
ES_00020857	chr15	+	362	2	Intergenic	novelGene_1423	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	79731224	79735950	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79731271_79735634
ES_00020858	chr15	+	1910	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	7542	False	NA	6	True	NA	NA	NA	79775899	79792119	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ES_00020859	chr15	+	600	3	FSM	ENSMUSG00000009585.19	ENSMUST00000176823.8	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	343.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGAGTTCAAGATCACC	7901	False	NA	NA	False	NA	NA	NA	79776258	79781965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_79776641_79779611_79779760_79781895
ES_00020861	chr15	+	4604	7	NNC	ENSMUSG00000022412.15	novel	4097	8	NA	NA	-3	-33	intron_retention	FALSE	canonical	1	2	junction_2	97.8138822231055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGGCCCATCATCTCCT	2840	False	NA	NA	False	AATAAA	-14	NA	80118305	80136954	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_80118383_80118882_80119044_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
ES_00020863	chr15	+	2769	22	NNC	ENSMUSG00000042303.20	novel	2997	22	NA	NA	0	189	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_21	34.5722156541651	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATCTTTTGTTGAGCCA	NA	False	NA	20	True	AATAAA	-20	NA	80862020	80896279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895817
ES_00020865	chr15	+	1400	1	FSM	ENSMUSG00002076492.1	ENSMUST00020181882.1	54	1	-810	-536	-810	536	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTCTCGGGACTCCCGG	2835	False	NA	NA	False	NA	NA	NA	81469523	81470923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81469500_81470900
ES_00020869	chr15	+	208	2	Intergenic	novelGene_1436	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTCTACATCTTGCAC	NA	False	NA	NA	False	NA	NA	NA	81641009	81655368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_81641046_81655196
ES_00020870	chr15	+	4247	4	FSM	ENSMUSG00000022389.16	ENSMUST00000109553.10	4403	4	156	0	-130	0	multi-exon	FALSE	canonical	2	3	junction_1	32.8870119584549	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCAGTGGTCTTTTCTG	NA	False	NA	17	True	ATTAAA	-17	NA	81686777	81711064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81687088_81699144_81699463_81705399_81705621_81707666
ES_00020872	chr15	+	324	2	Antisense	novelGene_ENSMUSG00000022472.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGTTATTATCTTAAAAA	7596	False	NA	NA	False	NA	NA	NA	81866010	81896105	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_+_81866219_81895989
ES_00020873	chr15	+	3108	24	FSM	ENSMUSG00000068117.11	ENSMUST00000189540.7	3718	24	610	0	-89	0	multi-exon	TRUE	canonical	0	0	junction_11	1.58561587207048	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACATTCCTGTGTGCACT	NA	False	NA	NA	False	AATAAA	-9	NA	81967274	82011010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_81967390_81969014_81969132_81970331_81970432_81970536_81970672_81973708_81973824_81975509_81975602_81976819_81976962_81978097_81978210_81980070_81980132_81982201_81982300_81985148_81985318_81985628_81985777_81987340_81987617_81991230_81991397_81993739_81993839_81996644_81996756_81997048_81997213_81999639_81999722_81999883_82000060_82007622_82007705_82008098_82008206_82009050_82009183_82009353_82009467_82010814
ES_00020874	chr15	+	748	3	FSM	ENSMUSG00000022463.9	ENSMUST00000229009.2	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	326.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCAGCAGGTCCCGGTAG	3005	False	NA	NA	False	NA	NA	NA	82032213	82055468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82032379_82053938_82054356_82055302
ES_00020875	chr15	+	392	3	FSM	ENSMUSG00000022452.17	ENSMUST00000160994.8	485	3	93	0	93	0	multi-exon	FALSE	canonical	1	2	junction_1	675.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGAGAGGTCGTCCCCAT	NA	False	NA	30	True	AATAAA	-12	NA	82223252	82233260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82223287_82232100_82232242_82233043
ES_00020876	chr15	+	2718	2	FSM	ENSMUSG00000049687.6	ENSMUST00000050349.3	2745	2	-11	38	-11	-38	multi-exon	FALSE	canonical	1	1	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCACTTCGCCCAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	82225368	82229873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_82225473_82227259
ES_00020878	chr15	+	228	2	Intergenic	novelGene_1445	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATCTGCCATATGGAACA	NA	False	NA	NA	False	NA	NA	NA	83016173	83034896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_83016262_83034756
ES_00020879	chr15	+	3050	9	NNC	ENSMUSG00000041653.6	novel	1313	8	NA	NA	-50	2283	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	14.5425023637612	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTCTCTGTCTCTTCTG	NA	False	NA	10	True	AATAAA	-45	NA	84051987	84073720	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_84052262_84055282_84055516_84056916_84056983_84058468_84058679_84061016_84061078_84063380_84063537_84065120_84065254_84070177_84070283_84071908
ES_00020881	chr15	+	695	7	FSM	ENSMUSG00000078954.10	ENSMUST00000167499.8	2446	7	-19	1770	12	-56	multi-exon	FALSE	canonical	0	0	junction_1	75.7781850754776	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTAAAGGAGAGATACT	NA	False	NA	NA	False	NA	NA	NA	84604264	84641331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_84604309_84617096_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220
ES_00020882	chr15	+	307	3	FSM	ENSMUSG00000022434.9	ENSMUST00000230213.2	298	3	-15	6	0	-6	multi-exon	FALSE	canonical	3	16	junction_1	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTAGGCAGTTACGGGG	NA	False	NA	NA	False	NA	NA	NA	84921387	84929036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_84921446_84922972_84923166_84928980
ES_00020883	chr15	+	1223	9	NNC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	2	-2257	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	57.1476978976406	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAAGGCATCTGTAGT	NA	False	NA	NA	False	AATAAA	-11	NA	84921389	84943693	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84943589
ES_00020888	chr15	+	364	4	FSM	ENSMUSG00000022623.18	ENSMUST00000123799.2	911	4	547	0	547	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGTCTGTGACCA	NA	False	NA	NA	False	NA	NA	NA	89415545	89416611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_89415622_89415828_89415912_89416297_89416423_89416531
ES_00020889	chr15	+	1832	7	NIC	ENSMUSG00000078932.9	novel	2041	13	NA	NA	-26	-14049	combination_of_known_splicesites	FALSE	canonical	3	5	junction_5	10.5303793326209	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATGTTTATATTTTTGA	NA	False	NA	NA	False	AATAAA	-20	NA	91083670	91131039	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91126772_91126889_91129815
ES_00020890	chr15	+	1030	4	FSM	ENSMUSG00000036273.16	ENSMUST00000137657.2	3801	4	2754	17	2754	-17	multi-exon	FALSE	canonical	0	0	junction_2	2.16024689946929	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCTGGTCAATTTCCAAG	NA	False	NA	NA	False	AATAAA	-1	NA	91695194	91700212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_91695348_91696394_91696604_91698864_91698937_91699616
ES_00020891	chr15	+	922	6	NIC	ENSMUSG00000036167.17	novel	1154	8	NA	NA	-23	-8	combination_of_known_splicesites	FALSE	canonical	3	13	junction_4	63.5282614274938	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTACAATAGCTTAAAGTAT	NA	False	NA	NA	False	AATAAA	-3	NA	93296254	93387181	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93362985_93363127_93386854
ES_00020893	chr15	+	4104	10	NIC	ENSMUSG00000036167.17	novel	592	3	NA	NA	94	404	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	65.001614414899	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTCTCCTCTCGTTTTTCC	NA	False	NA	NA	False	AATAAA	-24	NA	93297182	93389795	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_93297375_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ES_00020894	chr15	+	1460	10	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	21	5172	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	10.2101377845868	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGAGAGCTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	94441573	94460006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459812
ES_00020895	chr15	+	3708	9	ISM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	10108	-1291	10079	1291	3prime_fragment	FALSE	canonical	1	2	junction_8	12.598983093885	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCGAGCAATCGCCATTATA	NA	False	NA	NA	False	NA	NA	NA	94451631	94467478	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
ES_00020896	chr15	+	666	4	NNC	ENSMUSG00000063296.6	novel	2717	8	NA	NA	-104	-1746	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	49.179941710688	53	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATTGGTAGCCTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	94527008	94613284	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_94527184_94535941_94536245_94612742_94612876_94613229
ES_00020897	chr15	+	1122	5	NNC	ENSMUSG00000063296.6	novel	2717	8	NA	NA	-99	-171240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	43.9630526692585	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCAGTTCCCTCATTC	NA	False	NA	NA	False	AATAAA	-16	NA	94527013	94822739	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_94527184_94535941_94536245_94612742_94612876_94777261_94777362_94822323
ES_00020899	chr15	+	2053	4	NNC	ENSMUSG00000063296.6	novel	2717	8	NA	NA	325184	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.2491379207837	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGATGTAGGTTTTGT	NA	False	NA	8	True	AATAAA	-21	NA	94852314	94993983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_94852334_94909196_94909357_94972284_94972415_94992239
ES_00020900	chr15	+	7031	20	NIC	ENSMUSG00000033237.20	novel	8507	21	NA	NA	192	0	intron_retention	FALSE	canonical	3	74	junction_12	17.2666877007469	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGAGTCCTTTATTTCTG	NA	False	NA	13	True	AATAAA	-14	NA	96185645	96301482	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_+_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ES_00020901	chr15	+	2819	23	NNC	ENSMUSG00000033065.15	novel	2879	23	NA	NA	115	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	22.3296119591885	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	1711	False	NA	7	True	AATAAA	-19	NA	98006461	98030328	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_98006542_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ES_00020902	chr15	+	1138	2	FSM	ENSMUSG00000091050.2	ENSMUST00000163781.2	2147	2	-42	1051	-42	-1051	multi-exon	FALSE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCGGGTAAAGGGGTCT	8775	False	NA	NA	False	NA	NA	NA	98465162	98466413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_98465407_98465519
ES_00020908	chr15	+	2995	23	FSM	ENSMUSG00000023007.16	ENSMUST00000138036.8	2993	23	-2	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	55.1885573239973	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAACCAAGAAAA	NA	False	NA	NA	False	TTTAAA	-37	NA	99193119	99213995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_+_99193155_99199667_99199866_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207917_99212458_99212576_99212723_99213168_99213363_99213451_99213603_99213782_99213967
ES_00020909	chr15	+	3123	25	NNC	ENSMUSG00000023007.16	novel	2619	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_24	35.2053253152922	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	33	True	TTTAAA	-14	NA	99201163	99214888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214345
ES_00020912	chr15	+	2297	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	26	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125725	100159125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158177_100158218
ES_00020914	chr15	+	2398	9	NNC	ENSMUSG00000037353.10	novel	2502	9	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	34.6858670786821	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2433	False	NA	27	True	AGTAAA	-16	NA	100367001	100377045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373192_100373289_100373382_100373536_100374670_100374768_100375656
ES_00020926	chr15	+	8068	6	NNC	ENSMUSG00000001280.14	novel	328	3	NA	NA	-221	-13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	52.1175594209859	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCTGGTGTATTGAGAG	64	False	NA	17	True	AATAAA	-4	NA	102315482	102344826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_+_102315853_102316206_102316368_102316650_102318155_102334065_102334232_102338391_102338592_102339159
ES_00020935	chr15	-	351	1	FSM	ENSMUSG00000087221.4	ENSMUST00000194637.2	4379	1	1389	2639	1389	222	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTCTGAAAGGAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	4052585	4052234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_4052200_4052600
ES_00020936	chr15	-	217	2	Antisense	novelGene_ENSMUSG00000115342.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	664	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAACAAGGGGCAAAACC	NA	False	NA	NA	False	NA	NA	NA	5995259	5953207	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_5953237_5995071
ES_00020937	chr15	-	978	5	NNC	ENSMUSG00000005360.15	novel	964	3	NA	NA	24	-14915	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.9953699733862	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCAGCCTGAGAAGTGA	NA	False	NA	NA	False	AATAAA	-21	NA	8739941	8686654	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_8686996_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ES_00020939	chr15	-	2173	13	NNC	ENSMUSG00000044224.17	novel	2060	12	NA	NA	-95	25315	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	233.972027649081	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACCCCAAACAAATGAC	NA	False	NA	NA	False	NA	NA	NA	10470697	10421526	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10421552_10446848_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
ES_00020940	chr15	-	1232	11	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	53338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	734.144427207617	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACCCCAAACAAATGAC	NA	False	NA	NA	False	NA	NA	NA	10485973	10421526	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10421552_10476261_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ES_00020941	chr15	-	2576	11	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	734.144427207617	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	10485973	10474864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10475140_10475167_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ES_00020942	chr15	-	4777	17	NNC	ENSMUSG00000022246.15	novel	4732	17	NA	NA	22486	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_16	51.0170008428563	456	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	NA	False	NA	-3	True	AATAAA	-26	NA	10691140	10569054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10690990
ES_00020943	chr15	-	4947	18	NNC	ENSMUSG00000022246.15	novel	4909	18	NA	NA	22485	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_17	44.1362313798451	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	NA	False	NA	-3	True	AATAAA	-26	NA	10691141	10569054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10690908
ES_00020944	chr15	-	731	6	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	0	10072	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3216.36635972956	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAGATCCGTTATAAAT	855	False	NA	NA	False	NA	NA	NA	11996098	11971352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_11971394_11984060_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ES_00020945	chr15	-	625	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3433.10576410049	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGGATTGCTTTGTG	855	False	NA	13	True	ATTAAA	-32	NA	11996098	11984126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_11984384_11986541_11986651_11991044_11991170_11993875_11993948_11996036
ES_00020948	chr15	-	4400	4	FSM	ENSMUSG00000043556.11	ENSMUST00000059204.11	4632	4	235	-3	173	3	multi-exon	FALSE	canonical	0	0	junction_2	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGTTCCATTTTTTAA	527	False	NA	NA	False	AATAAA	-19	NA	26895431	26540541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_26543907_26552526_26553139_26789598_26789689_26895098
ES_00020949	chr15	-	6925	30	ISM	ENSMUSG00000022263.11	ENSMUST00000090247.7	11495	57	197490	0	-4575	0	3prime_fragment	FALSE	canonical	2	5	junction_26	3.9246772552236	335	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGTGTTAGGCTTTTTA	NA	False	NA	0	True	ATTAAA	-14	NA	27828444	27730736	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742457_27742597_27744038_27744287_27748006_27748816_27749864_27750043_27752675_27752868_27753797_27753876_27754098_27754150_27755223_27755317_27756551_27756642_27758425_27758496_27764039_27764144_27765804_27765872_27767970_27768120_27770395_27770492_27772995_27773167_27773966_27774260_27805715_27805960_27818149_27818250_27818985_27819129_27821425_27821528_27824066_27824258_27825748_27825861_27828351
ES_00020950	chr15	-	916	5	FSM	ENSMUSG00000022236.11	ENSMUST00000110408.3	957	5	32	9	32	-9	multi-exon	FALSE	canonical	0	0	junction_1	1.6583123951777	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCTGTGTCTGTGAGTT	NA	False	NA	NA	False	AATACA	-8	NA	31453851	31441365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31441527_31443437_31443614_31449109_31449272_31451227_31451352_31453558
ES_00020951	chr15	-	714	1	FSM	ENSMUSG00000115188.2	ENSMUST00000227734.2	797	1	143	-60	143	60	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAATAATAATAATAATA	NA	False	NA	NA	False	AATATA	-27	NA	31655569	31654855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_31654900_31655600
ES_00020954	chr15	-	738	3	FSM	ENSMUSG00000014313.16	ENSMUST00000153512.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	415.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	403	False	NA	-5	True	AATAAA	-18	NA	35937791	35932125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_35932244_35935430_35935560_35937300
ES_00020955	chr15	-	2103	14	NNC	ENSMUSG00000013611.15	novel	2344	14	NA	NA	-4559	-242	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	7.6522031479667	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATCTCGCCAATTTGAA	NA	False	NA	NA	False	NA	NA	NA	36560277	36504799	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36505620_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36560155
ES_00020956	chr15	-	2855	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	27897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1528.4851702112	2222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	377	False	NA	NA	False	NA	NA	NA	36609217	36568007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_36568045_36595903_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ES_00020960	chr15	-	344	1	FSM	ENSMUSG00000022292.17	ENSMUST00000227688.2	2814	1	2302	168	2302	-168	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGTAAAATGCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	37946384	37946040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_37946000_37946400
ES_00020963	chr15	-	3077	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	0	96851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	972.418891219211	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATATATATATA	NA	False	NA	NA	False	NA	NA	NA	38300950	38194855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_38194888_38294655_38296409_38296858_38297772_38297865_38298097_38300802
ES_00020964	chr15	-	2388	7	NNC	ENSMUSG00000022299.10	novel	5905	7	NA	NA	-12	8	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	35.1267546022813	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCTTTCATTTACTTA	NA	False	NA	NA	False	AATAAA	-24	NA	38976039	38954617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_38956051_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ES_00020965	chr15	-	1458	2	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	3807	False	NA	NA	False	NA	NA	NA	39108863	39105320	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_39106174_39108258
ES_00020966	chr15	-	1255	9	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	0	14369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	639.504104756177	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTCCTTGGACAGTG	NA	False	NA	NA	False	NA	NA	NA	51728850	51635584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_51635616_51649955_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ES_00020968	chr15	-	1365	7	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	0	50139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	306.837633502368	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGGTGGCTAGCACCTAG	NA	False	NA	NA	False	NA	NA	NA	57897721	57835515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_57835548_57885672_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
ES_00020969	chr15	-	386	2	FSM	ENSMUSG00000101892.2	ENSMUST00000185553.2	387	2	0	1	0	-1	multi-exon	FALSE	canonical	2	8	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTGCTTATTCTCCTA	NA	False	NA	NA	False	NA	NA	NA	57897721	57894352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57894497_57897479
ES_00020970	chr15	-	917	1	FSM	ENSMUSG00000022360.9	ENSMUST00000226582.2	2047	1	1107	23	1107	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACCCTGTCTCGAAA	NA	False	NA	NA	False	NA	NA	NA	57991300	57990383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_57990400_57991300
ES_00020971	chr15	-	676	2	NNC	ENSMUSG00000022358.8	novel	6976	9	NA	NA	34732	14459	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACAGGCTCAGGCCAGG	NA	False	NA	NA	False	NA	NA	NA	58043596	58024815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_58025072_58043176
ES_00020972	chr15	-	923	10	FSM	ENSMUSG00000050891.11	ENSMUST00000226707.2	922	10	2	-3	2	0	multi-exon	FALSE	canonical	2	2	junction_3	44.4124885117066	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805585	58772822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800392_58800599_58805527
ES_00020973	chr15	-	1413	9	FSM	ENSMUSG00000050891.11	ENSMUST00000226835.2	1427	9	2	12	2	-12	multi-exon	FALSE	canonical	3	13	junction_5	30.9230395498243	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCTCAGCTCTGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58805585	58780713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795677_58795818_58798284_58798335_58800532_58800599_58805527
ES_00020974	chr15	-	1844	11	NIC	ENSMUSG00000022378.15	novel	1770	12	NA	NA	-117	-2	combination_of_known_splicesites	FALSE	canonical	3	52	junction_10	335.160260174144	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTGGCTTGGTTTAC	8622	False	NA	-8	True	AATAAA	-18	NA	63869935	63802794	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63869746
ES_00020976	chr15	-	6092	30	NIC	ENSMUSG00000022377.17	novel	4582	31	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_28	23.6466758642573	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTGACATCAGGCCA	NA	False	NA	-8	True	AATAAA	-20	NA	64254605	63958705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
ES_00020977	chr15	-	366	2	FSM	ENSMUSG00000115351.2	ENSMUST00000227329.2	365	2	0	-1	0	1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATATTCAGGAAATGAATA	NA	False	NA	NA	False	NA	NA	NA	66230333	66229368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_66229497_66230095
ES_00020978	chr15	-	819	1	FSM	ENSMUSG00000106847.2	ENSMUST00000202826.2	4725	1	3867	39	3867	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCTTCAATAAATAAATGT	NA	False	NA	-37	True	NA	NA	NA	72678306	72677487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_72677500_72678300
ES_00020979	chr15	-	4341	32	NIC	ENSMUSG00000022607.19	novel	4540	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_31	61.7118273574527	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCATTGCCTTTTTTTT	1677	False	NA	-4	True	AATAAA	-44	NA	73295040	73076950	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73147469_73147491_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73294857
ES_00020981	chr15	-	751	1	FSM	ENSMUSG00000115602.2	ENSMUST00000228413.2	751	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTCCACACCACCCCAAAC	4678	False	NA	NA	False	AAGAAA	-41	NA	73280088	73279337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73279300_73280100
ES_00020982	chr15	-	563	2	FSM	ENSMUSG00000079020.10	ENSMUST00000150409.2	581	2	18	0	18	0	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTATGGATTTTTAACT	NA	False	NA	NA	False	NA	NA	NA	73517176	73477796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73477926_73516742
ES_00020983	chr15	-	494	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	-38	-66	-38	66	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTACTTCAGCTTGTTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	73681783	73681289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_73681300_73681800
ES_00020984	chr15	-	221	2	FSM	ENSMUSG00000022603.10	ENSMUST00000177179.2	475	2	0	254	0	-254	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGGACTAACCCAGCAGC	7582	False	NA	NA	False	NA	NA	NA	74480077	74478517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74478621_74479959
ES_00020985	chr15	-	612	3	FSM	ENSMUSG00000044678.12	ENSMUST00000168815.8	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	7.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	1229	False	NA	-2	True	ATTAAA	-18	NA	74671382	74668722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_74669121_74670383_74670483_74671267
ES_00020986	chr15	-	963	3	Fusion	ENSMUSG00000101289.2_ENSMUSG00000068348.5	novel	408	3	NA	NA	-162	392	multi-exon	FALSE	canonical	0	0	junction_2	38	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGTTTTTCTTTTGCT	NA	False	NA	1	True	AATAAA	-22	NA	75186975	75107053	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr15_-_75107668_75109440_75109558_75186743
ES_00020987	chr15	-	2945	4	Intergenic	novelGene_1396	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	11	junction_2	27.0842307543625	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTTCTTGGTCATGAA	NA	False	NA	NA	False	NA	NA	NA	75754409	75739576	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_75741955_75743124_75743327_75744217_75744419_75754245
ES_00020988	chr15	-	1724	7	FSM	ENSMUSG00000055762.17	ENSMUST00000137426.8	1724	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	1448.46788788092	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75775405	75767336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773105_75774527
ES_00020992	chr15	-	1438	10	FSM	ENSMUSG00000022570.8	ENSMUST00000230610.2	1431	10	0	-7	0	7	multi-exon	FALSE	canonical	0	0	junction_8	148.270023942805	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCCAGCCTTCTCCTC	9536	False	NA	-15	True	AATAAA	-29	NA	75800985	75796517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75799048_75800277_75800393_75800740
ES_00020993	chr15	-	1610	10	FSM	ENSMUSG00000022570.8	ENSMUST00000230364.2	1603	10	0	-7	0	7	multi-exon	FALSE	canonical	0	0	junction_7	195.538572494875	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCCAGCCTTCTCCTC	8925	False	NA	-15	True	AATAAA	-29	NA	75801596	75796517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_75796844_75797133_75797234_75797431_75797709_75797977_75798043_75798138_75798307_75798647_75798722_75798815_75799048_75800277_75800393_75800740_75800899_75801501
ES_00020995	chr15	-	5486	37	NIC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	33	-5	combination_of_known_junctions	FALSE	canonical	3	96	junction_9	77.9983529028374	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTCTTGTCCTTTTGTC	NA	False	NA	-6	True	AATAAA	-16	NA	75941570	75919011	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ES_00020996	chr15	-	5630	2	NNC	ENSMUSG00000118671.1	novel	12332	3	NA	NA	23889	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCATTTGCTCTGCTGTC	1466	False	NA	-2	True	AATAAA	-22	NA	75980506	75973331	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_75976630_75978174
ES_00020997	chr15	-	3112	10	FSM	ENSMUSG00000063268.13	ENSMUST00000165738.8	3367	10	257	-2	257	2	multi-exon	FALSE	canonical	1	1	junction_2	1.63299316185545	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAGGACCGGCTGGAAC	NA	False	NA	NA	False	AATAAA	-18	NA	76127363	76117200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76117807_76117897_76118073_76124248_76124383_76124486_76125132_76125355_76125429_76125525_76125748_76125857_76126523_76126602_76126840_76126931_76127187_76127263
ES_00020998	chr15	-	857	5	FSM	ENSMUSG00000022552.17	ENSMUST00000147001.10	854	5	0	-3	0	2	multi-exon	FALSE	canonical	3	127	junction_1	15.833114033569	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTTCTGTTCTTGGATG	8891	False	NA	-1	True	ATTAAA	-18	NA	76232395	76231237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76231386_76231458_76231795_76231863_76232018_76232095_76232205_76232285
ES_00021000	chr15	-	209	2	Intergenic	novelGene_1400	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAATAAAGTGAG	NA	False	NA	NA	False	NA	NA	NA	76251445	76250585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_76250744_76251394
ES_00021001	chr15	-	1737	10	NNC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	0	9300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.4958208877239	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAAACAAACCAAAAACA	NA	False	NA	NA	False	NA	NA	NA	76422935	76410620	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76410650_76419922_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
ES_00021002	chr15	-	353	1	FSM	ENSMUSG00000116234.2	ENSMUST00000230768.2	252	1	216	-317	216	317	mono-exon	FALSE	NA	NA	NA	NA	NA	250	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	76411005	76410652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76410700_76411000
ES_00021004	chr15	-	235	1	Intergenic	novelGene_1402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	76550117	76549882	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_76549900_76550100
ES_00021005	chr15	-	2833	3	FSM	ENSMUSG00000022526.9	ENSMUST00000229494.2	2855	3	22	0	13	0	multi-exon	FALSE	canonical	3	20	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAGAGATTTTTAATGT	NA	False	NA	NA	False	AAAAAG	-8	NA	76755595	76737209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76738815_76754006_76754121_76754481
ES_00021007	chr15	-	967	1	FSM	ENSMUSG00000115920.2	ENSMUST00000230695.2	1356	1	52	337	52	-337	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAACCCTCATTCAGCACA	NA	False	NA	NA	False	NA	NA	NA	76819208	76818241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_76818200_76819200
ES_00021008	chr15	-	7411	14	NNC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-53	378	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	64.6336970387692	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTAAAGTTTCCCCGAT	NA	False	NA	NA	False	NA	NA	NA	77191257	76962811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982283_76983437_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001265_77016916_77017142_77115586_77115638_77190563
ES_00021009	chr15	-	270	2	Intergenic	novelGene_1407	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTTGGGAAAAAAAACATT	5914	False	NA	NA	False	NA	NA	NA	77430625	77430330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_77430427_77430451
ES_00021010	chr15	-	621	4	FSM	ENSMUSG00000005354.17	ENSMUST00000173631.8	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	513.355194339704	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	3876	False	NA	-5	True	AATAAA	-19	NA	77812045	77799246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_77799437_77799904_77800058_77808742_77808867_77811891
ES_00021013	chr15	-	2384	3	FSM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	18	0	-15	0	multi-exon	FALSE	canonical	1	2	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTGGTACTTTTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	78413807	78407545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78409599_78411427_78411669_78413717
ES_00021014	chr15	-	441	1	FSM	ENSMUSG00000068226.4	ENSMUST00000180449.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAAGTCTGGCTGGGGAC	NA	False	NA	NA	False	NA	NA	NA	78439048	78438607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78438600_78439000
ES_00021015	chr15	-	1927	9	NNC	ENSMUSG00000018169.13	novel	1865	8	NA	NA	-36	28651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.8075273544511	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAATAGAACCCTT	NA	False	NA	NA	False	NA	NA	NA	78657711	78611430	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_78611456_78640080_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
ES_00021016	chr15	-	2634	7	FSM	ENSMUSG00000033055.13	ENSMUST00000133541.8	2582	7	-43	-9	-35	-1	multi-exon	FALSE	canonical	3	102	junction_5	6.51707159867238	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGTTTTTTGTGTTTTT	NA	False	NA	-1	True	NA	NA	NA	78947128	78937294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_78938285_78938695_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
ES_00021017	chr15	-	208	2	Antisense	novelGene_ENSMUSG00000075555.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	35	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTCTTTGTGCTGCCT	NA	False	NA	NA	False	AAAAAG	-4	NA	79073253	79027178	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_79027333_79073199
ES_00021018	chr15	-	397	2	Antisense	novelGene_ENSMUSG00000075555.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	34	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTCTTTGTGCTGCCT	NA	False	NA	NA	False	AAAAAG	-4	NA	79073253	79027178	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr15_-_79027522_79073199
ES_00021019	chr15	-	3146	18	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	13	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	55.3629733985577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTACAGTGTGTGCCAT	NA	False	NA	-7	True	AATAAA	-19	NA	79212363	79170424	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834_79211915_79212288
ES_00021021	chr15	-	2690	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	26	13	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTTGCTCTTGGGGT	8455	False	NA	9	True	AATAAA	-37	NA	79339741	79302042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
ES_00021022	chr15	-	3714	17	FSM	ENSMUSG00000042524.15	ENSMUST00000089311.11	3709	17	0	-5	0	5	multi-exon	TRUE	canonical	0	0	junction_6	1.1709371246997	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCTTTTTTCTGGTTGT	NA	False	NA	5	True	AATAAA	-21	NA	79626735	79608265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613681_79613760_79614290_79614546_79618308_79618437_79620046_79620127_79621266_79621361_79622720_79622862_79623020_79623212_79623921_79624083_79626539
ES_00021023	chr15	-	5591	5	NNC	ENSMUSG00000053411.17	novel	3388	6	NA	NA	1745	6	intron_retention	FALSE	non_canonical	0	0	junction_2	201.829754991676	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79814972	79800001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79802678_79802953_79805107_79805129_79805640_79807672_79807739_79814786
ES_00021024	chr15	-	3061	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	731	6	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	187.55147441584	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79815986	79800001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79815662
ES_00021025	chr15	-	4185	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	177.916334894304	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79818031	79800001	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79802252_79802477_79802678_79802953_79803129_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ES_00021026	chr15	-	3277	7	NNC	ENSMUSG00000053411.17	novel	3388	6	NA	NA	-10	6	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	187.837474074442	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	-1	True	ATTAAA	-30	NA	79855330	79800001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79802252_79802440_79802678_79802953_79803306_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ES_00021027	chr15	-	3085	7	NNC	ENSMUSG00000053411.17	novel	3388	6	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	189.654730145775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTGTGTGTCTGGTTGT	NA	False	NA	-6	True	ATTAAA	-25	NA	79816722	79800006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_79802252_79802440_79802678_79802953_79803306_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ES_00021028	chr15	-	399	2	Intergenic	novelGene_1426	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	39	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGTTGACTGGAAGCTC	NA	False	NA	NA	False	NA	NA	NA	79874222	79848215	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_79848494_79874101
ES_00021029	chr15	-	1477	10	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	3571	False	NA	-2	True	AATAAA	-16	NA	79967554	79961992	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
ES_00021030	chr15	-	878	5	NNC	ENSMUSG00000051518.9	novel	838	4	NA	NA	0	17984	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.469605449021	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGAAGCCTGTTGCAT	NA	False	NA	NA	False	NA	NA	NA	80148516	80126831	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_80126873_80144816_80145332_80145497_80145596_80148183_80148319_80148427
ES_00021031	chr15	-	336	1	Intergenic	novelGene_1430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	80835908	80835572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_80835600_80835900
ES_00021032	chr15	-	205	2	Intergenic	novelGene_1433	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2028	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAAAAAAAGGAGA	NA	False	NA	NA	False	NA	NA	NA	80909540	80885209	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_80885364_80909489
ES_00021033	chr15	-	1709	10	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	0	19610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.949673587668	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTCAATGTCTCACAG	6887	False	NA	NA	False	NA	NA	NA	81244974	81183501	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81183530_81203115_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ES_00021034	chr15	-	1459	1	FSM	ENSMUSG00000047108.5	ENSMUST00000057236.5	1374	1	-800	715	-800	-715	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGAGGGCCTTACGTCAT	8939	False	NA	NA	False	NA	NA	NA	81293300	81291841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81291800_81293300
ES_00021036	chr15	-	831	3	NIC	ENSMUSG00000061360.9	novel	1663	4	NA	NA	11	152	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	697	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAACGTCTACTTTTAG	NA	False	NA	-4	True	AATAAA	-22	NA	81756101	81749517	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_81750094_81754532_81754700_81756013
ES_00021037	chr15	-	234	2	Intergenic	novelGene_1438	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTTTTTTATAGAGA	9902	False	NA	NA	False	NA	NA	NA	81848420	81848031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_81848234_81848388
ES_00021038	chr15	-	2855	5	FSM	ENSMUSG00000022472.17	ENSMUST00000146628.8	2854	5	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_3	75.5016556109864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGGTAAGTTGCTTGAA	NA	False	NA	-8	True	AATAAA	-17	NA	81900354	81876722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81887958_81887981_81900078
ES_00021040	chr15	-	1564	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	-21	4356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTGAGTTCAAACCCCAG	4885	False	NA	NA	False	NA	NA	NA	81931820	81920369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_81920648_81925537_81926570_81928097_81928219_81931687
ES_00021041	chr15	-	860	7	NNC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	0	13651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.743089124399	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAACTGAAAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	82128874	82104328	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82104364_82118281_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ES_00021042	chr15	-	1910	12	NNC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	0	109404	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.128700067296	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAACTGAAAGAGAAG	1388	False	NA	NA	False	NA	NA	NA	82222983	82104328	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82104356_82137902_82137930_82213745_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ES_00021043	chr15	-	1925	11	NNC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	0	21830	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.1962876230757	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	1344	False	NA	NA	False	NA	NA	NA	82223027	82191902	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_82191931_82213748_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ES_00021045	chr15	-	1161	1	FSM	ENSMUSG00000049414.8	ENSMUST00000079706.7	438	1	-147	-576	-147	576	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAATATAAAAC	NA	False	NA	NA	False	AATAAA	-22	NA	83290411	83289250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83289200_83290400
ES_00021046	chr15	-	2186	13	NNC	ENSMUSG00000022442.17	novel	2060	12	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	26.455413224686	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGACTTTATCTTATTA	NA	False	NA	NA	False	NA	NA	NA	83395078	83367971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83393853_83393998_83394934
ES_00021048	chr15	-	2332	7	FSM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	51	0	51	0	multi-exon	FALSE	canonical	1	1	junction_1	29.8105126870818	1595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989904	83960297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_83961784_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ES_00021049	chr15	-	3117	10	ISM	ENSMUSG00000016624.16	ENSMUST00000162044.8	2568	12	47644	-753	-4550	0	3prime_fragment	FALSE	canonical	2	4	junction_7	2.74873708374511	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGGTGGTCCTGTGTCCT	NA	False	NA	-4	True	ATTAAA	-13	NA	84692308	84669581	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_84671651_84675265_84675370_84675554_84675631_84675983_84676143_84679280_84679336_84681523_84681601_84682843_84682896_84687654_84687787_84688960_84689312_84692266
ES_00021050	chr15	-	8370	35	NIC	ENSMUSG00000016028.12	novel	11305	35	NA	NA	2932	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	11.6555598803561	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGCTGGGTGGT	NA	False	NA	-5	True	AATAAA	-21	NA	85915472	85783129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_85784907_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ES_00021051	chr15	-	3017	8	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7513	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	242.987863978464	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7629	False	NA	-5	True	NA	NA	NA	88592580	88571236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88592298
ES_00021052	chr15	-	2797	9	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7517	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_8	274.180113018796	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7625	False	NA	-5	True	NA	NA	NA	88592584	88571236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88585162_88585474_88591236_88591498_88592440
ES_00021053	chr15	-	4657	14	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	220.32512286009	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	NA	False	NA	-5	True	NA	NA	NA	88618424	88571236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88596818_88596968_88597057_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ES_00021055	chr15	-	4326	12	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	186	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	191.594483952414	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTAGTTTTTGTCCCGTGT	NA	False	NA	-10	True	NA	NA	NA	88614788	88571241	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572680_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526
ES_00021056	chr15	-	4221	11	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	186	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	230.944170742628	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTAGTTTTTGTCCCGTGT	NA	False	NA	-10	True	NA	NA	NA	88614788	88571241	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_88572680_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526
ES_00021060	chr15	-	2315	13	NNC	ENSMUSG00000022614.9	novel	3262	13	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_12	68.3192566801874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGGTTTTTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	89239850	89235341	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238699_89239788
ES_00021063	chr15	-	1206	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	12	1	combination_of_known_junctions	FALSE	canonical	3	62	junction_3	114.705056558113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACTTAAGTGACATTCT	1661	False	NA	NA	False	AATAAA	-31	NA	89313621	89310561	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ES_00021064	chr15	-	320	1	Intergenic	novelGene_1458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	318	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATATATAATAAATAAAATC	5714	False	NA	NA	False	NA	NA	NA	89410947	89410627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_89410600_89410900
ES_00021065	chr15	-	3229	19	FSM	ENSMUSG00000052560.16	ENSMUST00000088649.11	3229	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	2.17235719955746	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGCCTTATGTGTATT	NA	False	NA	NA	False	ATTAAA	-14	NA	90563574	90371684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_90373379_90381267_90381342_90384087_90384146_90385613_90385717_90393697_90393826_90400110_90400293_90406110_90406158_90424434_90424497_90425459_90425514_90436176_90436253_90452451_90452494_90453662_90453768_90456147_90456252_90469080_90469145_90499313_90499354_90503834_90503939_90532780_90532828_90533445_90533487_90563370
ES_00021066	chr15	-	3359	20	FSM	ENSMUSG00000052560.16	ENSMUST00000064391.12	3366	20	8	-1	8	0	multi-exon	FALSE	canonical	0	0	junction_15	2.20676371507754	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGCCTTATGTGTATT	NA	False	NA	NA	False	ATTAAA	-14	NA	90563627	90371684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_90373379_90381267_90381342_90384087_90384146_90385613_90385717_90393697_90393826_90400110_90400293_90406110_90406158_90424434_90424497_90425459_90425514_90436176_90436253_90452451_90452494_90453662_90453768_90456147_90456252_90469080_90469145_90486015_90486093_90499313_90499354_90503834_90503939_90532780_90532828_90533445_90533487_90563370
ES_00021067	chr15	-	662	5	FSM	ENSMUSG00000022629.18	ENSMUST00000230487.2	663	5	0	1	0	-1	multi-exon	TRUE	canonical	1	1	junction_4	5.24404424085076	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGTATGAGTGGAGCTTG	NA	False	NA	NA	False	NA	NA	NA	90835509	90823187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_90823306_90824633_90824799_90826316_90826498_90827967_90828105_90835448
ES_00021068	chr15	-	490	1	FSM	ENSMUSG00000115993.2	ENSMUST00000231103.2	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGAGACAGATTGTCCT	NA	False	NA	NA	False	AAGAAA	-7	NA	93577530	93577040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_93577000_93577500
ES_00021069	chr15	-	711	2	FSM	ENSMUSG00000078648.4	ENSMUST00000168960.3	733	2	22	0	22	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTGTTCCTCAATAATA	NA	False	NA	NA	False	AATAAA	-20	NA	95727931	95722338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_95722925_95727806
ES_00021070	chr15	-	7929	16	NNC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	-118	3572	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.3652002628363	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTACCCTTTCTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	96358842	96306007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_96306051_96309582_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ES_00021071	chr15	-	1050	3	Intergenic	novelGene_1470	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	12	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTCTAGAATTTGTC	1455	False	NA	1	True	AATACA	-25	NA	97029758	97026296	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_97027102_97029104_97029267_97029675
ES_00021072	chr15	-	1048	3	Intergenic	novelGene_1471	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	8.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTCTAGAATTTGTC	1455	False	NA	1	True	AATACA	-25	NA	97029758	97026296	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_-_97027102_97029104_97029265_97029675
ES_00021073	chr15	-	1043	5	NNC	ENSMUSG00000116295.2	novel	593	4	NA	NA	1	347	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	351.51422446325	387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATTTGAATAAGCAGCTA	NA	False	NA	NA	False	NA	NA	NA	97065102	97054562	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_97055131_97059094_97059273_97059835_97059964_97064383_97064508_97065057
ES_00021074	chr15	-	2982	1	FSM	ENSMUSG00000048218.7	ENSMUST00000229890.2	2998	1	-45	61	-45	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTAATGTGCTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	97145048	97142066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97142100_97145000
ES_00021075	chr15	-	729	6	FSM	ENSMUSG00000022469.18	ENSMUST00000146214.3	729	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	6.27375485654325	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGATGCTGGACCTAG	NA	False	NA	NA	False	NA	NA	NA	97655383	97648237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059
ES_00021076	chr15	-	2459	18	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	21395	5	5659	-5	3prime_fragment	FALSE	canonical	2	3	junction_7	3.81582935064161	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATATGGTGACTTGTGT	3792	False	NA	NA	False	ATTAAA	-26	NA	97881143	97873487	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_97874068_97874522_97874766_97875062_97875251_97875601_97875891_97876218_97876327_97876758_97876813_97877045_97877154_97877265_97877320_97877512_97877621_97877755_97877810_97878026_97878135_97878328_97878437_97878605_97878768_97879395_97879450_97879884_97879939_97880409_97880518_97880796_97880851_97881118
ES_00021077	chr15	-	3922	20	NIC	ENSMUSG00000033075.18	novel	3882	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_16	66.2526014750822	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGCGGGCCCTTTCAC	6342	False	NA	-4	True	AATAAA	-13	NA	97991251	97939112	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97974792_97974924_97980123_97980209_97982850_97982982_97984966_97985015_97991163
ES_00021078	chr15	-	1708	3	FSM	ENSMUSG00000090129.11	ENSMUST00000170618.8	1776	3	65	3	-37	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	617	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGAGTTGCCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	98118872	98104854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98106259_98107884_98108005_98118688
ES_00021079	chr15	-	416	3	FSM	ENSMUSG00000011960.13	ENSMUST00000130921.3	2015	3	0	1599	0	-1599	multi-exon	FALSE	canonical	3	43	junction_1	1	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGAGTGTTTACACTT	NA	False	NA	NA	False	NA	NA	NA	98465561	98458077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98458207_98462927_98463010_98465356
ES_00021080	chr15	-	277	1	Genic_Genomic	ENSMUSG00000054855.14	novel	NA	NA	NA	NA	13960	199	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGCAAATTATTTGTTA	6390	False	NA	NA	False	NA	NA	NA	98561379	98561102	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr15_-_98561100_98561400
ES_00021081	chr15	-	400	1	FSM	ENSMUSG00000003355.8	ENSMUST00000229562.2	2411	1	1994	17	1994	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCCTGTCTCAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	98624027	98623627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_98623600_98624000
ES_00021082	chr15	-	3601	6	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	1	4858	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.430689701131	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACTGACTACTCTTCTG	1800	False	NA	NA	False	NA	NA	NA	98661091	98629656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_98629685_98635506_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ES_00021083	chr15	-	7386	32	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	3	20960	3	2085	5prime_fragment	FALSE	canonical	2	11	junction_12	67.0044495082393	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCTGTAACCCCTCGCTT	9495	False	NA	NA	False	NA	NA	NA	98769061	98750509	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr15_-_98751587_98751670_98751722_98751913_98751988_98752063_98752306_98752411_98752497_98752594_98752733_98752905_98753017_98753190_98753257_98753415_98753563_98753644_98753780_98753958_98754064_98754150_98754271_98754487_98754710_98755268_98755317_98755405_98755516_98755602_98755768_98755922_98756105_98757390_98757496_98758514_98758626_98758931_98759046_98759482_98760565_98760656_98762091_98762226_98762373_98762529_98762688_98762814_98762930_98763008_98763175_98763381_98763545_98763669_98763780_98763876_98764101_98764256_98764384_98764552_98764639_98768894
ES_00021094	chr15	-	2827	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.8380244062904	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCTAGGGGTGCGACT	NA	False	NA	NA	False	AATAAA	-24	NA	100320883	100285776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr15_-_100286360_100286506_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ES_00021102	chr15	-	2148	15	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-24	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	43.5309530972045	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTATGTTTTAAAGCT	6777	False	NA	NA	False	AATAAA	-19	NA	102112183	102085431	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr15_-_102086222_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112130
ES_00021113	chr15	-	3643	5	FSM	ENSMUSG00000009575.15	ENSMUST00000108813.10	3661	5	18	0	18	0	multi-exon	FALSE	canonical	3	24	junction_4	189.635176061827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGGGCATTGAATCT	NA	False	NA	NA	False	NA	NA	NA	103123761	103105113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123694
ES_00021116	chr15	+	207	1	Intergenic	novelGene_1326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAATAAATCTAAAAAA	9247	False	NA	NA	False	NA	NA	NA	5153125	5153332	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_5153100_5153300
ES_00021117	chr15	+	207	1	Intergenic	novelGene_1329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGGTTGACTAACATGTC	NA	False	NA	NA	False	NA	NA	NA	8036211	8036418	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8036200_8036400
ES_00021118	chr15	+	214	1	Intergenic	novelGene_1334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAACAAAAACAGTG	NA	False	NA	NA	False	NA	NA	NA	8290468	8290682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8290500_8290700
ES_00021119	chr15	+	1703	1	Intergenic	novelGene_1337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGACACCCACACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	8850736	8852439	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_8850700_8852400
ES_00021120	chr15	+	219	1	Intergenic	novelGene_1342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGAGATCTTCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	9899882	9900101	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_9899900_9900100
ES_00021121	chr15	+	689	1	Intergenic	novelGene_1353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGCTATATTAGCCATAC	NA	False	NA	NA	False	NA	NA	NA	27276598	27277287	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_27276600_27277300
ES_00021123	chr15	+	3539	1	Intergenic	novelGene_1361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTATCTTTAGGGGACT	1595	False	NA	NA	False	NA	NA	NA	37073224	37076763	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_37073200_37076800
ES_00021124	chr15	+	254	1	Intergenic	novelGene_1371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTGTTGTGTATGTGT	NA	False	NA	NA	False	GGGGCT	-28	NA	45841425	45841679	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_45841400_45841700
ES_00021125	chr15	+	234	1	Intergenic	novelGene_1404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCAGTACACAGCCTATA	2554	False	NA	NA	False	AATATA	-5	NA	76628773	76629007	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_76628800_76629000
ES_00021126	chr15	+	201	1	Intergenic	novelGene_1409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTAGTGCTCTTAACTGA	NA	False	NA	NA	False	NA	NA	NA	78468708	78468909	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_78468700_78468900
ES_00021127	chr15	+	209	1	Intergenic	novelGene_1413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTTATTTTATGTAC	5776	False	NA	NA	False	NA	NA	NA	78848418	78848627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_78848400_78848600
ES_00021128	chr15	+	203	1	Intergenic	novelGene_1414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGGCTTCTTAATAAG	7662	False	NA	NA	False	NA	NA	NA	78955615	78955818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_78955600_78955800
ES_00021129	chr15	+	233	1	Intergenic	novelGene_1422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGAATCTATGAGCTCCA	NA	False	NA	NA	False	AAAAAG	-39	NA	79630702	79630935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79630700_79630900
ES_00021131	chr15	+	220	1	Intergenic	novelGene_1425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTAAGCACACTTTTC	NA	False	NA	NA	False	NA	NA	NA	79820454	79820674	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_79820500_79820700
ES_00021132	chr15	+	211	1	Intergenic	novelGene_1435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCTCTGGTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	81544838	81545049	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_81544800_81545000
ES_00021133	chr15	+	306	1	Intergenic	novelGene_1437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATATGTGGCCAAAGCACT	4353	False	NA	NA	False	NA	NA	NA	81807152	81807458	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_81807200_81807500
ES_00021134	chr15	+	211	1	Intergenic	novelGene_1439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTAGTCTTTATTGCAT	NA	False	NA	NA	False	NA	NA	NA	82002326	82002537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_82002300_82002500
ES_00021135	chr15	+	219	1	Intergenic	novelGene_1442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGCCAAGGTTACAGAAA	NA	False	NA	NA	False	NA	NA	NA	82755822	82756041	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_82755800_82756000
ES_00021136	chr15	+	212	1	Intergenic	novelGene_1444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGGCTTTGACCACGGCT	867	False	NA	NA	False	NA	NA	NA	82899938	82900150	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_82899900_82900200
ES_00021137	chr15	+	201	1	Intergenic	novelGene_1446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCTTTCTCCACTTCCT	NA	False	NA	NA	False	NA	NA	NA	83210443	83210644	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_83210400_83210600
ES_00021139	chr15	+	231	1	Intergenic	novelGene_1454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88555236	88555467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_88555200_88555500
ES_00021141	chr15	+	226	1	Intergenic	novelGene_1476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACCAAAACCCAAAGGAC	NA	False	NA	NA	False	NA	NA	NA	98450039	98450265	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr15_+_98450000_98450300
ES_00021144	chr16	+	411	1	Genic_Genomic	ENSMUSG00000116389.2	novel	NA	NA	NA	NA	-25	-1635	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAACAGGAAA	NA	False	NA	NA	False	NA	NA	NA	3164750	3165161	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_+_3164800_3165200
ES_00021145	chr16	+	658	2	Intergenic	novelGene_1500	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGAGTCCACAAGTA	1177	False	NA	26	True	AGTAAA	-26	NA	3537017	3550571	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_3537043_3549938
ES_00021146	chr16	+	1841	2	Genic_Genomic	ENSMUSG00000095834.3	novel	513	1	NA	NA	-238	1670	multi-exon	FALSE	canonical	3	950	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATGGTGAAAAAAAAAAAAAG	5924	False	NA	11	True	AGTAAA	-11	NA	3548135	3550556	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_+_3549120_3549699
ES_00021147	chr16	+	513	1	FSM	ENSMUSG00000095834.3	ENSMUST00000179882.3	513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTGTCATGTGAATTCCA	6162	False	NA	NA	False	NA	NA	NA	3548373	3548886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3548400_3548900
ES_00021148	chr16	+	358	1	Intergenic	novelGene_1502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGAGTCCACAAGTA	8002	False	NA	26	True	AGTAAA	-26	NA	3550213	3550571	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_3550200_3550600
ES_00021149	chr16	+	3255	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	-14	0	-14	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	2810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	NA	False	NA	3	True	AATAAA	-12	NA	3561942	3568645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
ES_00021150	chr16	+	3856	6	FSM	ENSMUSG00000022529.12	ENSMUST00000161630.8	3856	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	76.2532622252976	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATAAATCTTTATTGG	NA	False	NA	12	True	AATAAA	-21	NA	3562095	3568654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3563377_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
ES_00021151	chr16	+	1095	3	FSM	ENSMUSG00000022529.12	ENSMUST00000160923.2	1095	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	125.5	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCCCTACAAGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	3562223	3567145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3562632_3566012_3566130_3566575
ES_00021152	chr16	+	2452	2	FSM	ENSMUSG00000022529.12	ENSMUST00000162207.2	2452	2	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATATGTATAAATCTT	1922	False	NA	6	True	AATAAA	-15	NA	3565750	3568648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3566130_3566575
ES_00021153	chr16	+	5817	3	FSM	ENSMUSG00000054939.7	ENSMUST00000041778.8	5897	3	56	24	56	-24	multi-exon	FALSE	canonical	2	5	junction_1	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGTATTGATTACTTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	3665187	3676720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3666139_3667214_3667435_3672074
ES_00021154	chr16	+	3754	6	ISM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	-64	0	-40	0	intron_retention	FALSE	canonical	1	49	junction_5	40.0149971885542	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702482	3722634	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646
ES_00021155	chr16	+	1032	9	FSM	ENSMUSG00000093575.2	ENSMUST00000176233.2	1012	9	-20	0	-20	0	multi-exon	FALSE	canonical	3	7	junction_4	48.4005100696263	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATGAGACTGAAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	3702491	3737381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344
ES_00021156	chr16	+	2374	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	-24	0	0	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702522	3722634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
ES_00021157	chr16	+	2415	7	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_6	52.451300163951	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702491	3722634	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3720000_3721329
ES_00021158	chr16	+	1779	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3094	False	NA	7	True	AATACA	-17	NA	3726688	3759011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ES_00021159	chr16	+	515	3	FSM	ENSMUSG00000014232.15	ENSMUST00000137745.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	17.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTCTTTCGGAGTC	3308	False	NA	NA	False	AATAAA	-14	NA	3726902	3731436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3727018_3729314_3729427_3731148
ES_00021160	chr16	+	427	1	FSM	ENSMUSG00000081809.3	ENSMUST00000118452.3	566	1	-45	184	-45	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTGTTCTGTCTCTCGA	1225	False	NA	NA	False	NA	NA	NA	3745424	3745851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3745400_3745900
ES_00021161	chr16	+	206	2	Intergenic	novelGene_1507	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTTTAAGACAGAATTT	4767	False	NA	NA	False	NA	NA	NA	4386507	4407302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_4386548_4407136
ES_00021162	chr16	+	3619	7	FSM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	16.3978318349985	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTGGGACACCTGCT	NA	False	NA	36	True	AATAAA	-30	NA	4412576	4433821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4412800_4426461_4426683_4428121_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4431249
ES_00021163	chr16	+	3512	4	FSM	ENSMUSG00000014303.14	ENSMUST00000122896.2	3512	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	5.65685424949238	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTCTGCACGTGCCAGG	NA	False	NA	21	True	AATAAA	-15	NA	4426490	4433806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4426683_4428121_4428295_4429143_4429734_4431249
ES_00021164	chr16	+	655	3	FSM	ENSMUSG00000014303.14	ENSMUST00000135577.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGGCTCAGATCATCATCC	NA	False	NA	NA	False	NA	NA	NA	4429273	4431520	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4429321_4429396_4429734_4431249
ES_00021165	chr16	+	1501	4	FSM	ENSMUSG00000004069.18	ENSMUST00000138495.2	1483	4	-18	0	0	0	multi-exon	FALSE	canonical	3	800	junction_2	42.166337284616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTGTACATGTACACAT	NA	False	NA	NA	False	AATAAA	-20	NA	4501959	4512109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075
ES_00021166	chr16	+	2510	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	-5	0	-5	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501954	4525559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
ES_00021167	chr16	+	2654	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	-6	0	-6	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501927	4525559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
ES_00021168	chr16	+	1730	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	9	True	CATAAA	-17	NA	4544226	4584606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ES_00021169	chr16	+	883	4	FSM	ENSMUSG00000004070.16	ENSMUST00000121529.2	856	4	-269	242	-120	0	multi-exon	FALSE	canonical	3	16	junction_1	174.959677894333	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCCATGCTTATACTCG	NA	False	NA	NA	False	NA	NA	NA	4574588	4582712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4574992_4580422_4580542_4581592_4581711_4582469
ES_00021170	chr16	+	3141	16	FSM	ENSMUSG00000022517.18	ENSMUST00000023159.10	3095	16	-46	0	-46	0	multi-exon	FALSE	canonical	3	266	junction_15	54.4223810169636	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2878	False	NA	13	True	AATAAA	-14	NA	4704066	4756159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ES_00021171	chr16	+	3254	17	FSM	ENSMUSG00000022517.18	ENSMUST00000070658.16	3138	17	-117	1	-114	0	multi-exon	FALSE	canonical	3	137	junction_15	100.835804033091	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2810	False	NA	13	True	AATAAA	-14	NA	4703998	4756159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ES_00021172	chr16	+	3161	17	NIC	ENSMUSG00000022517.18	novel	3138	17	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	118.010592744889	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGTGTGCCTTTGTTC	2925	False	NA	14	True	AATAAA	-15	NA	4704113	4756160	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ES_00021173	chr16	+	1995	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	-380	3	-380	0	multi-exon	FALSE	canonical	3	527	junction_2	18	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	NA	False	NA	9	True	AATAAA	-15	NA	4756244	4758880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4757158_4757241_4757503_4758059
ES_00021175	chr16	+	382	4	FSM	ENSMUSG00000096215.9	ENSMUST00000184439.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.326921891156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825151	4826170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4825190_4825607_4825753_4825835_4825934_4826069
ES_00021176	chr16	+	357	4	NIC	ENSMUSG00000096215.9	novel	382	4	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	19.6694913225759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825164	4826173	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_4825190_4825607_4825753_4825835_4825919_4826069
ES_00021177	chr16	+	414	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	-15	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825200	4826173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
ES_00021178	chr16	+	6301	17	FSM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	-716	4	-39	0	multi-exon	FALSE	canonical	3	39	junction_16	12.0167526291424	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4867881	4904149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4901919
ES_00021179	chr16	+	6475	19	FSM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	-20	0	-9	0	multi-exon	FALSE	canonical	3	7	junction_2	22.3737197026631	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4867911	4904149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4868646_4871591_4871706_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
ES_00021180	chr16	+	6408	18	FSM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	-56	4	-56	0	multi-exon	FALSE	canonical	3	47	junction_17	11.4435578952107	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4867864	4904149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
ES_00021181	chr16	+	1768	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	-13	0	-13	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1267	False	NA	17	True	AATAAA	-18	NA	5051471	5062767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
ES_00021182	chr16	+	1632	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	-19	212	-19	-212	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTGGCTGCTCACCC	NA	False	NA	NA	False	NA	NA	NA	8288632	8308336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ES_00021183	chr16	+	1315	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATCTTGCCCTTGAGAT	NA	False	NA	3	True	AATAAA	-12	NA	8288632	8308060	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ES_00021184	chr16	+	682	8	FSM	ENSMUSG00000057880.13	ENSMUST00000115838.8	1348	8	-3	669	-3	-669	multi-exon	FALSE	canonical	2	7	junction_1	1.04978131833565	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCTACGGTGCAGGAGC	NA	False	NA	NA	False	NA	NA	NA	8331341	8420242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8331439_8390699_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149
ES_00021185	chr16	+	1826	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	16	0	16	0	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455553	8475395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ES_00021188	chr16	+	4072	4	FSM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	16.3299316185545	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACAGGGGCTTGTCTGTA	9944	False	NA	10	True	AATAAA	-21	NA	8647963	8676786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8648550_8649184_8649266_8660831_8661108_8673657
ES_00021189	chr16	+	7552	3	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	48	9022	48	5769	5prime_fragment	FALSE	canonical	3	177	junction_1	10	1579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATTTTGCCTTTCTGTA	9992	False	NA	NA	False	TATAAA	-14	NA	8648011	8667764	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_8648550_8649184_8649266_8660831
ES_00021190	chr16	+	226	1	Intergenic	novelGene_1515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATGCACA	NA	False	NA	NA	False	AAAAAG	-23	NA	8678698	8678924	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8678700_8678900
ES_00021191	chr16	+	228	2	Antisense	novelGene_ENSMUSG00000068674.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGGGCTGGCTGATT	NA	False	NA	NA	False	NA	NA	NA	8678698	8742194	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_+_8678864_8742131
ES_00021192	chr16	+	209	2	Antisense	novelGene_ENSMUSG00000068674.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	134	junction_1	0	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGGGCTGGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	8696131	8742196	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_+_8696169_8742024
ES_00021193	chr16	+	207	2	Antisense	novelGene_ENSMUSG00000068674.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGGGCTGGCTGATT	NA	False	NA	NA	False	NA	NA	NA	8739012	8742194	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_+_8739050_8742024
ES_00021194	chr16	+	1683	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53043	929	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCCTCTCCCTAGTCT	6152	False	NA	6	True	AATAAA	-16	NA	8951051	8956237	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_8951217_8953545_8953645_8954818
ES_00021195	chr16	+	796	4	Fusion	ENSMUSG00000116123.2_ENSMUSG00000116469.2	novel	673	3	NA	NA	-25457	38	multi-exon	FALSE	canonical	1	1	junction_3	16.5193489244852	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTTGTGTGCAGTCTGT	6277	False	NA	53	True	NA	NA	NA	8951176	8980236	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr16_+_8951217_8953545_8953645_8964882_8964951_8979647
ES_00021196	chr16	+	5039	7	Intergenic	novelGene_1517	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_6	14.0880169726694	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCTAGTTCATCCTAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	8970656	9046586	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336_9038565_9040402_9040532_9040767_9040896_9042508
ES_00021197	chr16	+	2476	4	Intergenic	novelGene_1519	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	22.4845626053867	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGGCAGCAGAGTACATGC	NA	False	NA	NA	False	NA	NA	NA	8970656	9060028	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8970858_9010517_9010673_9032429_9032546_9058024
ES_00021198	chr16	+	822	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	-21	4	-19	-4	multi-exon	FALSE	canonical	3	487	junction_1	5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAATAATTGCTCTCTGG	NA	False	NA	64	True	NA	NA	NA	9988070	9992771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_9988189_9988278_9988356_9992144
ES_00021199	chr16	+	1051	9	FSM	ENSMUSG00000039200.17	ENSMUST00000119023.8	1048	9	-3	0	-3	0	multi-exon	FALSE	canonical	3	57	junction_2	24.2474225434375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAATTACAGACTTGTT	NA	False	NA	NA	False	AGTAAA	-25	NA	10010766	10055152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029
ES_00021200	chr16	+	1249	10	FSM	ENSMUSG00000039200.17	ENSMUST00000117220.8	1230	10	-19	0	-3	0	multi-exon	FALSE	canonical	3	57	junction_2	25.7557377042739	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAAGCTACAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	10010766	10058678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
ES_00021201	chr16	+	2612	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	166	0	-28	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010741	10060915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ES_00021202	chr16	+	2187	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	14	996	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTTCTCATGGTGTTT	NA	False	NA	44	True	AATGAA	-41	NA	10010824	10070338	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
ES_00021203	chr16	+	2492	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_10	37.4391506313912	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010824	10060915	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059446
ES_00021204	chr16	+	1649	7	NNC	ENSMUSG00000039200.17	novel	1048	9	NA	NA	17	426	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	44.8803966114383	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTAAGATGTTTTATTG	NA	False	NA	NA	False	AATAGA	-13	NA	10010827	10032521	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10031603
ES_00021205	chr16	+	2121	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ES_00021206	chr16	+	722	3	FSM	ENSMUSG00000068663.15	ENSMUST00000130148.2	704	3	-18	0	-5	0	multi-exon	FALSE	canonical	3	59	junction_1	9	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGGGGATTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	10363222	10381309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10363507_10377884_10378014_10381000
ES_00021207	chr16	+	6215	23	FSM	ENSMUSG00000068663.15	ENSMUST00000155633.8	6213	23	-5	3	-5	-3	multi-exon	TRUE	canonical	3	10	junction_9	19.0952376045325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGAGTGTGGCCTGCT	NA	False	NA	5	True	AATAAA	-15	NA	10363222	10562739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413850_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10559477
ES_00021209	chr16	+	310	1	FSM	ENSMUSG00000071671.6	ENSMUST00000096279.6	333	1	134	-111	134	111	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCTCATGCTGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	10619378	10619688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10619400_10619700
ES_00021216	chr16	+	3480	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12927547	12966598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
ES_00021217	chr16	+	5130	10	FSM	ENSMUSG00000022545.14	ENSMUST00000129049.2	5130	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	14.8805947046962	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTATCCTTGCTTAAGC	NA	False	NA	NA	False	AAAAAG	-9	NA	12929657	12968481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948887_12950721_12950815_12962264_12962378_12965389
ES_00021220	chr16	+	1719	2	FSM	ENSMUSG00000079737.5	ENSMUST00000225585.2	1705	2	-14	0	-14	0	multi-exon	FALSE	canonical	3	37	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTACTTTGGTATCTTAA	NA	False	NA	NA	False	AATAAA	-1	NA	13489778	13496252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13489943_13494697
ES_00021221	chr16	+	1694	8	NNC	ENSMUSG00000022684.16	novel	3003	8	NA	NA	-21	24	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	42.642797319891	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAAAAAAATTCTACCT	NA	False	NA	NA	False	AATAAA	-3	NA	13489792	13517177	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13508121_13508194_13510296_13510442_13515196_13515371_13516736
ES_00021222	chr16	+	2970	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	33	0	33	0	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489754	13521476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ES_00021223	chr16	+	2914	9	NNC	ENSMUSG00000022684.16	novel	3003	8	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	33	junction_8	22.2145082097264	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489778	13521476	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928_13520864_13520895
ES_00021224	chr16	+	3924	1	FSM	ENSMUSG00000118559.3	ENSMUST00000239037.2	3972	1	43	5	43	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTCTCAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	13572472	13576396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13572500_13576400
ES_00021227	chr16	+	1194	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	-19	0	-19	0	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637095	13653315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ES_00021229	chr16	+	1014	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637169	13653312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ES_00021234	chr16	+	3020	5	NNC	ENSMUSG00000022679.14	novel	2315	5	NA	NA	0	28544	at_least_one_novel_splicesite	TRUE	canonical	1	139	junction_4	25.664907948403	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	521	False	NA	NA	False	NA	NA	NA	13758558	13796027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615_13767081_13795902
ES_00021241	chr16	+	5956	31	NIC	ENSMUSG00000023088.18	novel	6792	31	NA	NA	-24	-835	combination_of_known_junctions	FALSE	canonical	3	25	junction_20	25.3100770445291	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGGCACAAAGGTCTCAA	7132	False	NA	47	True	NA	NA	NA	14179397	14292766	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276887_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
ES_00021242	chr16	+	766	1	FSM	ENSMUSG00000116423.2	ENSMUST00000230636.2	759	1	-1	-6	-1	6	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGACTGACAGATTCCAA	NA	False	NA	NA	False	NA	NA	NA	15269866	15270632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_15269900_15270600
ES_00021245	chr16	+	3746	1	FSM	ENSMUSG00000071637.6	ENSMUST00000096232.6	3746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCAATAGCCTCATGGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	15705149	15708895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_15705100_15708900
ES_00021247	chr16	+	2815	4	FSM	ENSMUSG00000022792.17	ENSMUST00000159962.8	2805	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	45	junction_2	149.404001136367	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGATATATTTCTGTT	9496	False	NA	NA	False	GATAAA	-20	NA	16120818	16126806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073
ES_00021248	chr16	+	1548	5	FSM	ENSMUSG00000022792.17	ENSMUST00000159683.2	1528	5	-20	0	-4	0	multi-exon	FALSE	canonical	3	45	junction_2	137.095769446034	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTTTACACAAGAACAA	9502	False	NA	16	True	AATAAA	-21	NA	16120824	16127496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073_16125245_16127195
ES_00021249	chr16	+	1597	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	-23	0	-10	0	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGAACAATCCTTGCT	9496	False	NA	24	True	AATAAA	-29	NA	16120818	16127504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
ES_00021251	chr16	+	2951	19	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	108.44980917969	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTCTGGAACAAAGAGCC	NA	False	NA	NA	False	ATTAAA	-17	NA	16688612	16710839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_16688694_16692932_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021252	chr16	+	2971	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	-21	0	0	0	multi-exon	TRUE	canonical	3	71	junction_1	102.489023802552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688599	16710849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021253	chr16	+	3520	6	FSM	ENSMUSG00000022779.17	ENSMUST00000232531.2	3508	6	-12	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	63.4457248362725	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGGAAAGCTTTACAA	NA	False	NA	NA	False	NA	NA	NA	16688637	16703329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364
ES_00021254	chr16	+	3097	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	-24	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688620	16710854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021255	chr16	+	2844	18	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	287	junction_1	39.4304608859032	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688642	16710849	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021256	chr16	+	3528	17	FSM	ENSMUSG00000022779.17	ENSMUST00000231278.2	3511	17	-17	0	0	0	multi-exon	FALSE	canonical	3	15	junction_12	136.348129800155	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688663	16710854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705721_16705870_16707346_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021257	chr16	+	2958	19	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	112.156209957803	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTCTGGAACAAAGAGCC	NA	False	NA	NA	False	ATTAAA	-17	NA	16688828	16710839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_16688920_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021261	chr16	+	1810	5	FSM	ENSMUSG00000022779.17	ENSMUST00000231432.2	1810	5	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_1	25.321680433968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTCTGGAACAAAGAGCC	NA	False	NA	NA	False	ATTAAA	-17	NA	16705702	16710839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16705870_16707346_16708126_16708445_16708547_16709218_16709421_16710278
ES_00021262	chr16	+	4845	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	77	0	-28	0	multi-exon	FALSE	canonical	3	74	junction_7	6.62093155786084	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGTGCCACTTGGATCT	NA	False	NA	35	True	AATAAA	-17	NA	16714409	16745228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
ES_00021264	chr16	+	1747	8	FSM	ENSMUSG00000063358.18	ENSMUST00000115731.10	1747	8	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_5	32.3728281124773	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACATTTAAAAATA	NA	False	NA	NA	False	AATATA	-5	NA	16801430	16856904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
ES_00021266	chr16	+	572	3	FSM	ENSMUSG00000022773.20	ENSMUST00000232168.2	1137	3	0	565	0	-565	multi-exon	FALSE	canonical	2	2	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGTGATCTGGACTCAAA	NA	False	NA	NA	False	NA	NA	NA	16888061	16895918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16888228_16892490_16892617_16895638
ES_00021267	chr16	+	694	5	FSM	ENSMUSG00000022773.20	ENSMUST00000231514.2	694	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	18.2414363469547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGCCTGGGCATGGGA	NA	False	NA	NA	False	NA	NA	NA	16888092	16900040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16888228_16892490_16892617_16895638_16895919_16899461_16899506_16899931
ES_00021269	chr16	+	1666	4	ISM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	-188	0	-140	0	intron_retention	TRUE	canonical	3	70	junction_3	17.4547032821147	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964654	16966710	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660
ES_00021270	chr16	+	1321	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	-24	0	6	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964818	16966710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
ES_00021275	chr16	+	1631	10	FSM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	0	0	0	0	multi-exon	TRUE	canonical	3	122	junction_4	58.6725586266908	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17093940	17096525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ES_00021277	chr16	+	702	2	FSM	ENSMUSG00000055692.22	ENSMUST00000231334.2	706	2	0	4	0	-4	multi-exon	FALSE	canonical	3	40	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAAGGGTCTCTTCTTTGGG	NA	False	NA	7	True	AATAAA	-18	NA	17095464	17101089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17095756_17100678
ES_00021282	chr16	+	3100	21	NNC	ENSMUSG00000022761.13	novel	3394	21	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	27.889558978227	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTTTGTCTCCGAGTCT	NA	False	NA	29	True	NA	NA	NA	17326839	17344194	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340424_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ES_00021288	chr16	+	4717	20	FSM	ENSMUSG00000005899.15	ENSMUST00000006053.13	4623	20	-94	0	-94	0	multi-exon	FALSE	canonical	2	4	junction_11	83.2673829522215	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATCTCCCTGTTTTGG	NA	False	NA	15	True	NA	NA	NA	17437123	17462692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17453345_17453433_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
ES_00021295	chr16	+	3271	7	NNC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-120	0	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	149.069335098358	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577361	17611228	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_17578119_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ES_00021297	chr16	+	2558	7	FSM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	-14	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577526	17611228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ES_00021302	chr16	+	3779	2	Intergenic	novelGene_1552	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGGTCCCGAGAGCGCTC	NA	False	NA	-39	True	NA	NA	NA	17830168	17834803	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17833159_17834014
ES_00021304	chr16	+	1074	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	-40	16	0	0	multi-exon	FALSE	canonical	3	112	junction_3	141.891463802443	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTCTGTGCTACCTA	NA	False	NA	9	True	AATAAA	-15	NA	17884266	17889206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
ES_00021309	chr16	+	2251	12	NNC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.6614186759067	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	390	False	NA	8	True	AATAAA	-22	NA	18066867	18071366	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_18067121_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ES_00021310	chr16	+	2235	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	448	False	NA	8	True	AATAAA	-22	NA	18066925	18071366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ES_00021314	chr16	+	1762	4	FSM	ENSMUSG00000118669.2	ENSMUST00000239537.1	1604	4	-51	-107	-51	107	multi-exon	FALSE	canonical	3	234	junction_1	37.8505834389203	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGAGTGTCACTCAGT	NA	False	NA	NA	False	NA	NA	NA	18210396	18217468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576
ES_00021315	chr16	+	3840	16	FSM	ENSMUSG00000118669.2	ENSMUST00000239538.1	3829	16	-11	0	-5	0	multi-exon	FALSE	canonical	3	221	junction_7	31.2985622672991	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATGAAGAAAACTGACAA	NA	False	NA	-32	True	NA	NA	NA	18210442	18225006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851
ES_00021316	chr16	+	4232	17	FSM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	30.582815333942	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGTTTGTGACTCATTC	NA	False	NA	18	True	NA	NA	NA	18210480	18225821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
ES_00021317	chr16	+	1902	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	3	0	0	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCTGCGTGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	18245166	18297820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ES_00021318	chr16	+	549	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	-17	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245194	18256562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
ES_00021321	chr16	+	3534	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	-10	25	0	-25	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCAATAAAGTCATTGGT	NA	False	NA	NA	False	NA	NA	NA	18317627	18385404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ES_00021322	chr16	+	1412	8	FSM	ENSMUSG00000000884.18	ENSMUST00000000904.15	1412	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	116.273604143022	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317533	18383292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18366842_18366942_18371116_18371333_18382784
ES_00021327	chr16	+	1436	2	FSM	ENSMUSG00000071632.11	ENSMUST00000190776.2	930	2	-146	-360	-69	0	multi-exon	FALSE	canonical	3	177	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655258	18658910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18655624_18657839
ES_00021328	chr16	+	1281	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18655370_18655455_18655624_18657839
ES_00021329	chr16	+	4247	25	FSM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	-29	0	0	0	multi-exon	TRUE	canonical	3	33	junction_15	30.9156277902725	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGCCTTCCCTGCCTT	NA	False	NA	7	True	AATAAA	-23	NA	18695786	18789059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ES_00021330	chr16	+	2098	13	ISM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	219	42301	15	-3	5prime_fragment	FALSE	canonical	3	103	junction_2	13.4109718762909	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTGATTATCC	NA	False	NA	4	True	AATAAA	-13	NA	18696034	18746758	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
ES_00021331	chr16	+	4173	25	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	50	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_15	33.301547344764	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGCCTTCCCTGCCTT	NA	False	NA	7	True	AATAAA	-23	NA	18696069	18789059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_18696270_18713523_18713587_18715203_18715524_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ES_00021335	chr16	+	4585	5	FSM	ENSMUSG00000022686.15	ENSMUST00000121344.8	4175	5	100	-510	74	-10	multi-exon	FALSE	canonical	2	7	junction_3	34.3829536253068	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTGGAAGCATCTGC	NA	False	NA	NA	False	AATAAA	-3	NA	19579057	19591493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19584250_19584372_19587493
ES_00021337	chr16	+	7949	9	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	5	0	intron_retention	FALSE	non_canonical	2	70	junction_2	11.4017542509914	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916317	19947971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655_19946738_19946934
ES_00021338	chr16	+	8146	8	FSM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	26	0	5	0	multi-exon	FALSE	canonical	3	70	junction_2	11.8562822407122	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916317	19947971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ES_00021339	chr16	+	2432	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	-4	-5638	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	AATGAA	-2	NA	19916330	19942333	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ES_00021343	chr16	+	5989	30	NIC	ENSMUSG00000041215.17	novel	6112	31	NA	NA	23	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_29	38.3549664095259	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGAGCTGGAAGCACC	NA	False	NA	16	True	AATAAA	-22	NA	19959865	20051323	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_19959986_19969191_19969311_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20049514
ES_00021347	chr16	+	1213	9	FSM	ENSMUSG00000003235.14	ENSMUST00000231315.2	1213	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1022.68091309069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20323512	20328073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20323541_20323948_20324109_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ES_00021350	chr16	+	4702	16	NNC	ENSMUSG00000003233.13	novel	3983	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_15	49.0181825675149	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATTATTATTATTATT	NA	False	NA	15	True	NA	NA	NA	20335813	20352760	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_20336106_20341005_20341076_20342159_20342282_20342401_20342512_20342689_20342826_20343001_20343096_20343268_20343339_20344388_20344529_20344655_20344733_20344838_20344907_20345016_20345167_20345698_20345831_20346001_20346170_20349526_20349743_20349829_20351304_20351377
ES_00021352	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	1353	False	NA	17	True	NA	NA	NA	20354227	20362806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ES_00021357	chr16	+	845	3	FSM	ENSMUSG00000003234.17	ENSMUST00000148679.2	845	3	0	0	0	0	multi-exon	TRUE	canonical	3	316	junction_1	4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTTGCCTCTCTGCTC	NA	False	NA	4	True	ATTAAA	-13	NA	20378406	20379568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20378483_20378664_20378798_20378932
ES_00021359	chr16	+	3155	19	FSM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	-3	0	-3	0	multi-exon	TRUE	canonical	3	19	junction_18	7.37781124490401	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448574	20464665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
ES_00021360	chr16	+	3445	13	FSM	ENSMUSG00000022842.19	ENSMUST00000125971.2	3445	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_12	6.66406199117492	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATTTCACTTTTTTAAAA	NA	False	NA	NA	False	GATAAA	-27	NA	20451619	20465235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090
ES_00021365	chr16	+	5454	32	FSM	ENSMUSG00000045983.17	ENSMUST00000073840.12	5394	32	-58	-2	-32	0	multi-exon	FALSE	canonical	3	236	junction_1	320.871770382026	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491440	20511633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00021366	chr16	+	5459	33	NIC	ENSMUSG00000045983.17	novel	5507	32	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	471	junction_14	285.078235903651	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491495	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00021367	chr16	+	5455	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	252.911559316567	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491496	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00021368	chr16	+	713	8	FSM	ENSMUSG00000045983.17	ENSMUST00000231618.2	713	8	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	327.252632860739	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCGCACTGCCTCCACA	NA	False	NA	NA	False	NA	NA	NA	20491569	20497389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494509_20494580_20496435_20496549_20497331
ES_00021369	chr16	+	5507	32	FSM	ENSMUSG00000045983.17	ENSMUST00000115461.8	5507	32	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_13	284.360933460748	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20492169	20511633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00021372	chr16	+	548	2	FSM	ENSMUSG00000045983.17	ENSMUST00000129958.2	548	2	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCTCTGTGTAGCCCTG	8829	False	NA	NA	False	NA	NA	NA	20507727	20508414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20507803_20507941
ES_00021386	chr16	+	907	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	51.1921869038626	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTGGAAAGATGGG	NA	False	NA	16	True	AATAAA	-21	NA	21613111	21627776	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21625720_21625870_21627427
ES_00021405	chr16	+	1572	8	FSM	ENSMUSG00000022871.14	ENSMUST00000231768.2	1572	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	190.973018716129	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737083	22758528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22737345_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ES_00021409	chr16	+	1544	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22738986	22758502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ES_00021414	chr16	+	3023	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-315	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	5739	False	NA	NA	False	AATAAA	-17	NA	22926193	22932696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ES_00021415	chr16	+	2378	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	0	-170	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAATTACCAAGA	5739	False	NA	NA	False	NA	NA	NA	22926193	22932867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ES_00021416	chr16	+	2203	10	FSM	ENSMUSG00000022884.17	ENSMUST00000168891.8	2203	10	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAATTACCAAGA	5774	False	NA	NA	False	NA	NA	NA	22926228	22932867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ES_00021418	chr16	+	780	2	FSM	ENSMUSG00000022884.17	ENSMUST00000134816.2	776	2	-4	0	0	0	multi-exon	FALSE	canonical	3	1632	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTCAGGTTTCACAACT	6049	False	NA	NA	False	NA	NA	NA	22926503	22928050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22926571_22927337
ES_00021419	chr16	+	1988	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	-23	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6049	False	NA	NA	False	AATAAA	-1	NA	22926503	22932680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ES_00021420	chr16	+	1931	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-24	-170	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAATTACCAAGA	6049	False	NA	NA	False	NA	NA	NA	22926503	22932867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ES_00021421	chr16	+	2532	10	NIC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	575.550128674544	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6074	False	NA	NA	False	AATAAA	-1	NA	22926528	22932680	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ES_00021422	chr16	+	1965	12	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	564.272309855287	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTATATTCACTTTATA	6075	False	NA	NA	False	AATGAA	-18	NA	22926529	22932679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ES_00021423	chr16	+	1850	11	NIC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	441	junction_1	507.107927368524	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6083	False	NA	NA	False	AATAAA	-1	NA	22926537	22932680	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ES_00021430	chr16	+	3440	31	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-53	0	combination_of_known_junctions	TRUE	canonical	3	139	junction_4	92.8546295142155	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398098	29470694	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ES_00021433	chr16	+	6011	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	0	-284	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGGAGAGTATCTTTTA	NA	False	NA	17	True	ATTAAA	-28	NA	29398197	29473418	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ES_00021438	chr16	+	4714	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-25	-2	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	72.0681462806789	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCATATGTTAAATGTGT	NA	False	NA	14	True	AATAAA	-12	NA	31482701	31692162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021439	chr16	+	4773	26	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-29	-1	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	76.3517753559143	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATATGTTAAATGTGTC	NA	False	NA	15	True	AATAAA	-13	NA	31482697	31692163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021440	chr16	+	4707	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	67.2157466463196	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCTTGAATTTTGGAAG	NA	False	NA	29	True	AATAAA	-27	NA	31482726	31692177	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021441	chr16	+	4722	26	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	72.1576052817719	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATGTTAAATGTGTCT	NA	False	NA	16	True	AATAAA	-14	NA	31482752	31692164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021442	chr16	+	4614	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	76.7834142789531	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCATATGTTAAATGTGT	NA	False	NA	14	True	AATAAA	-12	NA	31482756	31692162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021443	chr16	+	4663	26	FSM	ENSMUSG00000022770.18	ENSMUST00000064477.14	4663	26	0	0	0	0	multi-exon	FALSE	canonical	1	100	junction_1	67.3545841053154	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATGTTAAATGTGTCT	NA	False	NA	16	True	AATAAA	-14	NA	31482856	31692164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021444	chr16	+	4638	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	72.3319772338318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATATGTTAAATGTGTC	NA	False	NA	15	True	AATAAA	-13	NA	31482736	31692163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021445	chr16	+	4873	26	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	71.9072291219735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATGTTAAATGTGTCT	NA	False	NA	16	True	AATAAA	-14	NA	31482643	31692164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00021451	chr16	+	1418	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	-24	0	2	0	multi-exon	FALSE	canonical	3	19	junction_1	52	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	18	True	AATAAA	-19	NA	32066046	32075901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32066344_32070640_32071137_32075276
ES_00021455	chr16	+	4395	10	FSM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	-11	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	51.2071561357021	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGCCTTGTGTGCTGT	8252	False	NA	NA	False	NA	NA	NA	32151074	32206713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ES_00021457	chr16	+	761	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	-41	0	3	0	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238522	32247913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
ES_00021463	chr16	+	4878	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	8	4	8	0	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGTCGGACTCATTT	7965	False	NA	14	True	AATAAA	-15	NA	32427745	32451608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ES_00021467	chr16	+	4313	14	FSM	ENSMUSG00000022791.20	ENSMUST00000115125.8	4313	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	42.5358880846272	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	False	NA	26	True	AATAAA	-22	NA	32463460	32502311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499969_32500098_32501502
ES_00021468	chr16	+	5195	15	FSM	ENSMUSG00000022791.20	ENSMUST00000115123.9	4226	15	-969	0	-17	0	multi-exon	TRUE	canonical	3	77	junction_4	34.8270508281674	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	False	NA	26	True	AATAAA	-22	NA	32462674	32502311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ES_00021475	chr16	+	4585	8	FSM	ENSMUSG00000022800.15	ENSMUST00000232300.2	2262	8	165	-2488	121	57	multi-exon	FALSE	canonical	3	485	junction_4	66.7529713471503	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTTCTGAAGAGAAGGC	NA	False	NA	NA	False	ATTAAA	-16	NA	32698341	32729302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32719310_32721002_32721078_32722788_32722916_32725901
ES_00021479	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	False	NA	34	True	AATAAA	-45	NA	32876822	32880559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ES_00021482	chr16	+	503	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	-3	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876893	32880535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ES_00021483	chr16	+	781	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	-282	20	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGTATTTTTTTTTC	NA	False	NA	0	True	AATAAA	-15	NA	32876893	32880525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ES_00021484	chr16	+	518	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	1	True	AATAAA	-16	NA	32877387	32880526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
ES_00021486	chr16	+	201	1	Intergenic	novelGene_1597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	634	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTTCTTAATATGTAAC	NA	False	NA	NA	False	NA	NA	NA	32959380	32959581	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_32959400_32959600
ES_00021504	chr16	+	3504	11	FSM	ENSMUSG00000022906.16	ENSMUST00000114878.8	3548	11	44	0	44	0	multi-exon	FALSE	canonical	3	21	junction_5	7.49399759807808	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTGAATCGTGAATG	NA	False	NA	13	True	AATAAA	-19	NA	35758883	35792975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35759431_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
ES_00021506	chr16	+	1662	4	ISM	ENSMUSG00000022906.16	ENSMUST00000023622.13	2973	10	24775	0	15502	0	3prime_fragment	FALSE	canonical	3	23	junction_2	8.37987005998436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTGAATCGTGAATG	8362	False	NA	13	True	AATAAA	-19	NA	35784155	35792975	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_35784735_35788019_35788157_35789960_35790136_35792204
ES_00021507	chr16	+	5039	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACAGGTTTTCCTTGGG	NA	False	NA	26	True	AATAAA	-39	NA	35803684	35857501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
ES_00021510	chr16	+	2851	1	FSM	ENSMUSG00000034379.10	ENSMUST00000042203.10	2739	1	73	-185	73	185	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGATGGCAGGTCTGGAA	4451	False	NA	NA	False	AATACA	-8	NA	35861632	35864483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35861600_35864500
ES_00021512	chr16	+	752	5	FSM	ENSMUSG00000075229.12	ENSMUST00000099937.6	740	5	-12	0	-12	0	multi-exon	FALSE	canonical	3	7	junction_1	389.064262044203	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35901632	35912481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35901774_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ES_00021515	chr16	+	3057	8	FSM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	-15	0	-15	0	multi-exon	FALSE	canonical	3	17	junction_1	99.4786409235671	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACAGAAAAAAAAAAAAAA	NA	False	NA	69	True	NA	NA	NA	36514324	36547166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ES_00021516	chr16	+	2883	8	FSM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	-5	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	133.242452020398	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTCCTGTGTTTGGC	NA	False	NA	6	True	ATTAAA	-18	NA	36514394	36547103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
ES_00021518	chr16	+	2324	5	NIC	ENSMUSG00000022900.15	novel	3042	8	NA	NA	32	-9	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	100.402626957665	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACTGGCTAAATTCCT	NA	False	NA	-3	True	ATTAAA	-9	NA	36535931	36547094	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_36535964_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ES_00021520	chr16	+	2227	15	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	4	4	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGTCATGTTATTTCAA	NA	False	NA	48	True	AATAAA	-15	NA	36648750	36693079	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ES_00021521	chr16	+	2279	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-22	0	1	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648747	36693075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ES_00021522	chr16	+	1684	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648742	36679934	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ES_00021526	chr16	+	8641	31	FSM	ENSMUSG00000034206.16	ENSMUST00000182946.8	8628	31	-13	0	-13	0	multi-exon	FALSE	canonical	2	7	junction_10	7.47655595103045	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATTTATGGGAATTTA	3735	False	NA	-18	True	AATATA	-16	NA	36832134	36915759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560_36837718_36843095_36843205_36848131_36848352_36849704_36849853_36853753_36853901_36855158_36855372_36860844_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ES_00021527	chr16	+	8565	30	FSM	ENSMUSG00000034206.16	ENSMUST00000054034.7	8552	30	-13	0	-13	0	multi-exon	FALSE	canonical	2	7	junction_9	7.54534449468019	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATGTTTTTAATTTTT	3735	False	NA	2	True	AATAAA	-15	NA	36832134	36915779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560_36837718_36843095_36843205_36848131_36848352_36849704_36849853_36853753_36853901_36855158_36855372_36860844_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ES_00021530	chr16	+	2202	6	FSM	ENSMUSG00000034206.16	ENSMUST00000182717.2	2202	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.75680975041804	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATGTTTTTAATTTTT	NA	False	NA	2	True	AATAAA	-15	NA	36906276	36915779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ES_00021531	chr16	+	1980	8	FSM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	-20	0	-5	0	multi-exon	FALSE	canonical	3	12	junction_4	38.0767216904748	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTGTCATTTCTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	37360241	37392744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37384030_37384129_37387681_37387754_37390749_37390789_37391391
ES_00021532	chr16	+	2037	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	-6	0	-6	0	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	37360240	37392747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
ES_00021534	chr16	+	8604	4	FSM	ENSMUSG00000034158.10	ENSMUST00000078717.7	8604	4	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	10.2089285540757	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTGGTCCGGTCAT	NA	False	NA	22	True	AATAAA	-22	NA	37688750	37709220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_37689343_37697410_37697540_37698648_37698927_37701615
ES_00021538	chr16	+	3690	2	FSM	ENSMUSG00000046516.11	ENSMUST00000120495.2	3690	2	0	0	0	0	multi-exon	FALSE	canonical	3	3811	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATATGCTGAACCG	NA	False	NA	9	True	ATTAAA	-11	NA	38167383	38173106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_38167570_38169602
ES_00021540	chr16	+	1720	5	FSM	ENSMUSG00000075122.6	ENSMUST00000099816.3	1701	5	-20	1	-20	-1	multi-exon	FALSE	canonical	1	1	junction_3	0.82915619758885	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGGGAGCAAGTTAGT	NA	False	NA	NA	False	AATAAA	-18	NA	38279274	38307294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_38279652_38294227_38294546_38299425_38299708_38302981_38303096_38306665
ES_00021542	chr16	+	1557	9	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	87	junction_5	232.101136360855	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTATCTTTCATGTGT	7070	False	NA	10	True	ATTAAA	-18	NA	38379059	38411668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
ES_00021543	chr16	+	2873	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	-2	0	-2	0	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383171	38412524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ES_00021544	chr16	+	2669	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	-2	0	-2	0	multi-exon	FALSE	canonical	1	87	junction_5	275.38779475496	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383171	38412524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
ES_00021547	chr16	+	2248	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	12	44	10	-44	multi-exon	FALSE	canonical	3	15	junction_1	6.0184900284226	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATACCCACATACATAAAA	3924	False	NA	NA	False	NA	NA	NA	38562637	38589367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
ES_00021550	chr16	+	526	1	FSM	ENSMUSG00000081824.6	ENSMUST00000121906.2	319	1	-71	-136	-71	136	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAATCTGTATTAGATG	NA	False	NA	NA	False	AATAAA	-39	NA	42775922	42776448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_42775900_42776400
ES_00021552	chr16	+	1919	8	FSM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	-12	-85	-12	85	multi-exon	FALSE	canonical	3	61	junction_7	9.64682458064808	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTGAGTTCCAGGACAGC	NA	False	NA	NA	False	NA	NA	NA	43710249	43760015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276
ES_00021555	chr16	+	2967	16	NIC	ENSMUSG00000022701.19	novel	3779	17	NA	NA	16	-617	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	23.7144119331122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGCCTGGACTTACG	NA	False	NA	16	True	AATAAA	-16	NA	43710318	43784060	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_43710402_43718452_43718595_43725713_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ES_00021556	chr16	+	4510	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	-23	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAAGTATTTGTTTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	43960192	43983729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ES_00021557	chr16	+	3557	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
ES_00021558	chr16	+	3540	6	NNC	ENSMUSG00000022698.18	novel	3557	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	621.383488676679	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825_43981724_43981743
ES_00021559	chr16	+	12708	7	FSM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	17.7709188157381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTCTCTTCCCGCCCAG	NA	False	NA	NA	False	AATAAA	-24	NA	43993608	44047828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_43993874_44019266_44019385_44020976_44021042_44022100_44022130_44025360_44025444_44033002_44033100_44035777
ES_00021560	chr16	+	851	6	ISM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	5	14530	5	3	5prime_fragment	FALSE	canonical	3	31	junction_1	10.2097992144802	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTTGATTACTTCT	NA	False	NA	NA	False	NA	NA	NA	43993613	44033298	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_43993874_44019266_44019385_44020976_44021042_44022100_44022130_44025360_44025444_44033002
ES_00021570	chr16	+	1271	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
ES_00021575	chr16	+	6291	28	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-4	3433	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	346.731012546799	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCATTTCTAAGTTCTCC	NA	False	NA	NA	False	ACTAAA	-4	NA	48251595	48454696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ES_00021576	chr16	+	6189	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-4	3433	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	351.484057816864	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCATTTCTAAGTTCTCC	NA	False	NA	NA	False	ACTAAA	-4	NA	48251595	48454696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ES_00021577	chr16	+	3011	26	NIC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_18	356.504442609065	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251598	48451263	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_48251766_48257637_48257692_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ES_00021578	chr16	+	3417	19	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17444	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	404.178041077059	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	6965	False	NA	11	True	AATAAA	-16	NA	48317438	48451263	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48318727_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ES_00021579	chr16	+	1017	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16998	0	at_least_one_novel_splicesite	FALSE	canonical	3	485	junction_1	244.404064898224	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	693	False	NA	11	True	AATAAA	-16	NA	48432027	48451263	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ES_00021580	chr16	+	4193	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16992	3361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	424.555061211146	196	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTGTTGTGAACCTCC	687	False	NA	NA	False	AATAAA	-18	NA	48432021	48454624	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ES_00021581	chr16	+	1285	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16978	358	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_1	345.998525418587	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGGCAGAGGCAGAGGC	673	False	NA	NA	False	NA	NA	NA	48432007	48451621	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ES_00021584	chr16	+	1779	4	FSM	ENSMUSG00000033031.14	ENSMUST00000149004.2	1779	4	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_2	19.94993734326	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAGATCAGTACTTTG	NA	False	NA	NA	False	AATAAA	-27	NA	48836199	48840072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_48836421_48836641_48836725_48837714_48837855_48838737
ES_00021585	chr16	+	2201	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	400	0	-400	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTGTCTGACAGGCAG	NA	False	NA	NA	False	NA	NA	NA	49519595	49585089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ES_00021588	chr16	+	1251	9	NIC	ENSMUSG00000055447.20	novel	1358	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_8	11.8532695911297	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676014	49731444	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ES_00021589	chr16	+	6390	19	FSM	ENSMUSG00000022637.12	ENSMUST00000227062.2	3728	19	0	-2662	0	-2	multi-exon	TRUE	canonical	3	23	junction_2	15.6067609597354	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTGTATGTTATTT	NA	False	NA	NA	False	TATAAA	-15	NA	51851925	52028409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
ES_00021591	chr16	+	6476	19	FSM	ENSMUSG00000022637.12	ENSMUST00000226593.2	3864	19	-41	-2571	2	36	multi-exon	FALSE	canonical	3	31	junction_16	12.3923761908006	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTTGAAAGCATATTTC	NA	False	NA	NA	False	NA	NA	NA	51851927	52028447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_51852049_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
ES_00021615	chr16	+	4409	3	NNC	ENSMUSG00000054604.8	novel	4425	3	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	384	junction_2	450.5	135	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATATTTTGTTTTGTGA	NA	False	NA	19	True	AATAAA	-28	NA	64672369	64679868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_64672600_64673161_64673389_64675916
ES_00021618	chr16	+	3089	16	NIC	ENSMUSG00000022707.17	novel	2984	16	NA	NA	-105	0	intron_retention	TRUE	canonical	1	5	junction_14	8.94278107376745	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTAATGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	70110731	70366604	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_70111184_70157745_70157916_70198621_70198738_70230432_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911_70358030_70365876
ES_00021627	chr16	+	711	3	FSM	ENSMUSG00000022867.12	ENSMUST00000232538.2	711	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAAAAAGACTCAGACTAC	NA	False	NA	NA	False	AATAAA	-28	NA	76878389	76890816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_76878574_76880636_76880838_76890490
ES_00021643	chr16	+	3089	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	116	0	116	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251706	87280405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ES_00021645	chr16	+	1422	7	FSM	ENSMUSG00000025616.15	ENSMUST00000131206.8	1405	7	-16	-1	0	1	multi-exon	FALSE	canonical	3	153	junction_5	32.3045404445464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTCTCTACCTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	87251914	87267913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241
ES_00021654	chr16	+	641	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
ES_00021655	chr16	+	3970	3	FSM	ENSMUSG00000022982.11	ENSMUST00000232505.2	3970	3	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_1	39	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_90021314_90022032_90022151_90023037
ES_00021657	chr16	+	5975	12	NNC	ENSMUSG00000053414.9	novel	5393	11	NA	NA	-555	4882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	39.0951371920616	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGTTTTAAGAGGTT	NA	False	NA	NA	False	NA	NA	NA	90182345	90301323	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_90183605_90229401_90229695_90244197_90244254_90250567_90250704_90261028_90261157_90269331_90269468_90272707_90272871_90278137_90278222_90284746_90284795_90290300_90290482_90292977_90296438_90301292
ES_00021661	chr16	+	1512	6	FSM	ENSMUSG00000039903.19	ENSMUST00000231280.2	1692	6	0	180	0	7	multi-exon	FALSE	canonical	2	2	junction_1	5.2687759489278	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTAATAATTCTATACAG	NA	False	NA	NA	False	AATAAA	-38	NA	90627875	90701593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_90628321_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
ES_00021664	chr16	+	1108	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	-9	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169728	91190928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
ES_00021665	chr16	+	1811	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	34	5	34	-5	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTAGGGGGTTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	91203156	91222717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
ES_00021667	chr16	+	3915	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	-6	0	-6	0	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATATTTTCTTTATTTA	NA	False	NA	24	True	NA	NA	NA	91282119	91304329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
ES_00021671	chr16	+	8709	13	NNC	ENSMUSG00000022961.19	novel	8426	13	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	127.877871424262	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTCTTATTCTCTGG	NA	False	NA	14	True	AATAAA	-1	NA	91444361	91476083	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_91444873_91448517_91448685_91451498_91457184_91457225_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
ES_00021672	chr16	+	8731	12	FSM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	92.9729366114073	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTGGCTTTTATGGAAC	NA	False	NA	26	True	AATAAA	-13	NA	91444393	91476095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
ES_00021673	chr16	+	7946	5	FSM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	-1	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	147.892697588488	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGCCATTGTGTGTTT	NA	False	NA	4	True	NA	NA	NA	91444766	91460921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91459379
ES_00021674	chr16	+	7586	7	FSM	ENSMUSG00000022961.19	ENSMUST00000119368.8	7529	7	-57	0	-57	0	multi-exon	FALSE	canonical	3	68	junction_6	146.545120090101	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTGTGCAAAATCACGC	NA	False	NA	8	True	AATAAA	-19	NA	91444709	91462596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91461807
ES_00021675	chr16	+	8399	12	FSM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_11	95.0516171212009	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTCTTATTCTCTGG	NA	False	NA	14	True	AATAAA	-1	NA	91444766	91476083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
ES_00021676	chr16	+	8969	13	FSM	ENSMUSG00000022961.19	ENSMUST00000140312.8	8426	13	-296	-247	77	221	multi-exon	FALSE	canonical	2	9	junction_8	148.597400717509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACTAGAAATCATTAGT	NA	False	NA	NA	False	NA	NA	NA	91444470	91476330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91471582_91471663_91472288_91472437_91474292_91474365_91474476_91474593_91475041
ES_00021677	chr16	+	3808	5	FSM	ENSMUSG00000022961.19	ENSMUST00000232108.2	3808	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	125.037994225755	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGAGGAAGTTTATGTT	3971	False	NA	29	True	AATAAA	-26	NA	91469150	91475948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91471663_91472288_91472437_91474292_91474365_91474476_91474593_91474988
ES_00021678	chr16	+	5435	29	FSM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	-73	2	17	0	multi-exon	FALSE	canonical	3	117	junction_18	26.3675937468704	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGGAAACGTCTCTGTG	NA	False	NA	7	True	ATTAAA	-17	NA	91526185	91668541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91650582_91650789_91651460_91651544_91655096_91655264_91658081_91658128_91660144_91660267_91664907_91665026_91666505_91666698_91667080
ES_00021679	chr16	+	6061	16	FSM	ENSMUSG00000022957.21	ENSMUST00000095909.10	6103	16	0	42	0	-42	multi-exon	FALSE	canonical	3	154	junction_12	15.0928975202098	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAAAACATTTAATAAAA	NA	False	NA	NA	False	TATAAA	-25	NA	91526257	91629199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081
ES_00021680	chr16	+	5150	27	FSM	ENSMUSG00000022957.21	ENSMUST00000113996.8	5147	27	-3	0	0	0	multi-exon	FALSE	canonical	2	3	junction_23	40.0925150534811	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGGAAACGTCTCTGTG	NA	False	NA	7	True	ATTAAA	-17	NA	91526257	91668541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91650582_91650789_91651460_91651544_91660144_91660267_91664907_91665026_91666505_91666698_91667080
ES_00021681	chr16	+	3457	21	ISM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	0	20200	0	139	5prime_fragment	FALSE	canonical	3	117	junction_18	19.7557586541241	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATGCCCGTCCTGGAGG	NA	False	NA	NA	False	AATAAA	-29	NA	91526258	91648343	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693
ES_00021688	chr16	+	1044	4	Fusion	ENSMUSG00000051483.10_ENSMUSG00000082815.3	novel	1237	3	NA	NA	25	1	multi-exon	TRUE	non_canonical	1	100	junction_3	159.896494298308	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGTTTACAAATGTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	93404749	93427340	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr16_+_93405143_93405676_93405785_93406682_93406886_93427000
ES_00021690	chr16	+	1158	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	13	18	10	-18	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGGTTATTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	93508831	93537544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
ES_00021701	chr16	+	2631	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-584	1916	at_least_one_novel_splicesite	FALSE	canonical	3	232	junction_1	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2280	False	NA	17	True	NA	NA	NA	93811715	93815011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_93811971_93812291_93812370_93812713
ES_00021702	chr16	+	1087	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-607	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2257	False	NA	17	True	NA	NA	NA	93811692	93815011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
ES_00021703	chr16	+	958	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-556	1916	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	67.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2308	False	NA	17	True	NA	NA	NA	93811743	93815011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_93811971_93812713_93813006_93814572
ES_00021704	chr16	+	2921	2	FSM	ENSMUSG00000116947.2	ENSMUST00000231382.2	452	2	-553	-1916	-553	1916	multi-exon	FALSE	canonical	3	261	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2311	False	NA	17	True	NA	NA	NA	93811746	93815011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_93812370_93812713
ES_00021715	chr16	+	3799	11	FSM	ENSMUSG00000040785.20	ENSMUST00000119131.3	3781	11	-18	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	14.2197046382828	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCACTTTTGTAGAACT	NA	False	NA	NA	False	AGTAAA	-12	NA	94171638	94198054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94195193
ES_00021717	chr16	+	6002	33	NIC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	32.491690644494	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTTCACTGTCGTCCTTG	NA	False	NA	NA	False	AATAAA	-19	NA	94171638	94270081	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_94171721_94204172_94204228_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ES_00021718	chr16	+	7776	45	FSM	ENSMUSG00000040785.20	ENSMUST00000232660.2	8298	45	404	118	404	5	multi-exon	FALSE	canonical	0	0	junction_36	31.5577245589545	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCACTGTCGTCCTTGCCC	NA	False	NA	NA	False	AATAAA	-22	NA	94184170	94270084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ES_00021721	chr16	+	6108	12	FSM	ENSMUSG00000022897.16	ENSMUST00000119878.8	5759	12	-349	0	-349	0	multi-exon	FALSE	canonical	3	100	junction_3	29.752977488337	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTTTTAAAATGGATT	NA	False	NA	20	True	AGTAAA	-22	NA	94370519	94495926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_94371394_94412277_94412364_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
ES_00021729	chr16	+	2509	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946592	95959052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ES_00021730	chr16	+	2696	5	FSM	ENSMUSG00000023147.18	ENSMUST00000232832.2	2678	5	-18	0	-14	0	multi-exon	FALSE	canonical	1	2	junction_1	155.048984195318	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946592	95959052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_95946966_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ES_00021736	chr16	+	2164	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	-81	-1537	-69	1172	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTCTTTTGTCTTACAA	NA	False	NA	NA	False	NA	NA	NA	97798445	97834173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
ES_00021737	chr16	+	1321	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-11	-641	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798522	97817956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
ES_00021738	chr16	+	1230	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798563	97817956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
ES_00021740	chr16	+	342	1	FSM	ENSMUSG00000080717.11	ENSMUST00000183578.2	2449	1	591	1516	574	-1516	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAATGACATAGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	97799137	97799479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_97799100_97799500
ES_00021741	chr16	-	5697	3	FSM	ENSMUSG00000039789.8	ENSMUST00000090522.5	5668	3	9	-38	9	38	multi-exon	FALSE	canonical	3	7	junction_2	9.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAAACAGCTGGTTGGA	NA	False	NA	53	True	AATATA	-33	NA	3690251	3679353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3684595_3689013_3689141_3689922
ES_00021742	chr16	-	5587	3	FSM	ENSMUSG00000039789.8	ENSMUST00000119599.3	1842	3	17	-3762	17	0	multi-exon	FALSE	canonical	3	18	junction_2	4	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATACTTCAAGAATTT	4407	False	NA	15	True	AATAAA	-33	NA	3702408	3679391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3684595_3689013_3689141_3702151
ES_00021743	chr16	-	853	1	ISM	ENSMUSG00000049871.15	ENSMUST00000180200.8	3842	15	30074	612	17736	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAGTCTAAAAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	3764335	3763482	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_3763500_3764300
ES_00021744	chr16	-	6212	16	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	-50	-7	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	9.12724858139991	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAACCACCGGGAACAC	NA	False	NA	41	True	AATAAA	-29	NA	3821684	3796975	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
ES_00021745	chr16	-	2006	4	FSM	ENSMUSG00000039738.17	ENSMUST00000145706.2	1945	4	-55	-6	-55	1	multi-exon	FALSE	canonical	3	55	junction_1	1.69967317119759	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACACTCCTCTCTGAGAA	NA	False	NA	26	True	AATAAA	-42	NA	3800123	3796990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448
ES_00021747	chr16	-	865	4	FSM	ENSMUSG00000039738.17	ENSMUST00000165830.2	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	7.11805216802087	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGCTGTGAGGCTACAGA	NA	False	NA	NA	False	NA	NA	NA	3819116	3812631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3812785_3813557_3813742_3816981_3817210_3818816
ES_00021748	chr16	-	715	2	FSM	ENSMUSG00000039738.17	ENSMUST00000171762.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCAGATCAGCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	3821634	3818866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3819543_3821595
ES_00021749	chr16	-	691	2	FSM	ENSMUSG00000039738.17	ENSMUST00000171658.2	673	2	-18	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGCCACACTCAGAACC	NA	False	NA	NA	False	AAGAAA	-43	NA	3821634	3819064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3819543_3821421
ES_00021750	chr16	-	228	3	NNC	ENSMUSG00000084790.2	novel	565	3	NA	NA	4489	18060	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACACCCAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	3850894	3832642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3832658_3842126_3842150_3850704
ES_00021751	chr16	-	2347	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	20142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.655385485241	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAGCAAAACAAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	3895691	3837692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3837720_3857834_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ES_00021752	chr16	-	2339	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	20142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.655385485241	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAGCAAAACAAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	3895691	3837692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3837720_3857842_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ES_00021753	chr16	-	2340	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	20142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.655385485241	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAGCAAAACAAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	3895691	3837692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3837720_3857841_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ES_00021754	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_15	112.803285922348	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895691	3857834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ES_00021755	chr16	-	10845	31	FSM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	-25	0	-25	0	multi-exon	FALSE	canonical	3	32	junction_30	8.09416799649943	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTCCGATTGGCTAAT	5987	False	NA	2	True	AATAAA	-27	NA	4031886	3899191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944837_3946307_3946551_3955229_3955344_3956608_3956850_3972720_3972898_3997287_3997998_4031002
ES_00021757	chr16	-	363	2	Genic_Genomic	ENSMUSG00000022521.11	novel	3134	1	NA	NA	-729	-325	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTAGGATTTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	3914719	3904798	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_3904974_3914531
ES_00021759	chr16	-	4507	11	FSM	ENSMUSG00000005580.12	ENSMUST00000117801.8	4507	11	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_5	2.72763633939717	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAAAAAAGCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	4237672	4105392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4106954_4112526_4112569_4115272_4115422_4116550_4116711_4122240_4122450_4125019_4125123_4129388_4129607_4130548_4130654_4141630_4141822_4235716_4237453_4237639
ES_00021760	chr16	-	325	1	FSM	ENSMUSG00000084304.2	ENSMUST00000120290.2	325	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTTTCTGTATGGGAT	NA	False	NA	NA	False	TATAAA	-41	NA	4138544	4138219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4138200_4138500
ES_00021761	chr16	-	3786	7	NNC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	0	31597	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.915076220022	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGGAGTTGTACCCTAT	NA	False	NA	NA	False	NA	NA	NA	4359678	4266482	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4266512_4298075_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4359543
ES_00021762	chr16	-	366	4	FSM	ENSMUSG00000022519.15	ENSMUST00000133440.2	366	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	4.78423336480244	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGGACCGTGGAGTG	NA	False	NA	NA	False	NA	NA	NA	4359680	4305442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4305474_4310157_4310254_4311642_4311745_4359543
ES_00021764	chr16	-	2521	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	-276	2	-276	-2	multi-exon	TRUE	canonical	3	103	junction_5	11.6010057035299	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGTAGTTATTGAGGA	NA	False	NA	-2	True	AATAAA	-20	NA	4377994	4362526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
ES_00021765	chr16	-	633	6	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	0	47820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	493.230007197453	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATATAATACATACATAA	NA	False	NA	NA	False	NA	NA	NA	4442852	4386507	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4386549_4434331_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ES_00021766	chr16	-	629	6	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	0	36912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	493.230007197453	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	4442852	4397415	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4397450_4434328_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ES_00021767	chr16	-	1068	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	-472	0	472	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGCACGAACAAAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	4442852	4433855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ES_00021769	chr16	-	4296	28	FSM	ENSMUSG00000039637.16	ENSMUST00000038552.13	4296	28	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_15	10.2195380265448	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAGCAGTGTCTCTCATC	NA	False	NA	NA	False	NA	NA	NA	4497641	4443996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
ES_00021770	chr16	-	614	5	FSM	ENSMUSG00000039637.16	ENSMUST00000127125.2	736	5	122	0	116	0	multi-exon	FALSE	canonical	3	90	junction_3	13.3860935302276	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCGCTAACCGGCTGCG	NA	False	NA	NA	False	NA	NA	NA	4452783	4451187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625
ES_00021771	chr16	-	2440	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAAACTTTTGTCCTTT	4843	False	NA	NA	False	NA	NA	NA	4536973	4527922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ES_00021772	chr16	-	1306	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4796	False	NA	-6	True	AATAAA	-18	NA	4537020	4529180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ES_00021773	chr16	-	3953	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTTTGGCTCTATACT	NA	False	NA	-3	True	TATAAA	-21	NA	4607854	4583324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ES_00021774	chr16	-	3811	4	FSM	ENSMUSG00000004071.14	ENSMUST00000140187.8	3811	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	8.01387685344754	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4589376	4584704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4586514_4586608_4587660_4587906_4588016_4588534
ES_00021775	chr16	-	2462	6	FSM	ENSMUSG00000004071.14	ENSMUST00000117713.8	1964	6	0	-498	0	0	multi-exon	FALSE	canonical	1	5	junction_2	194.363988434072	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4607794	4584704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4586514_4586608_4586832_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ES_00021776	chr16	-	2549	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	5	0	5	0	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4608151	4584704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
ES_00021778	chr16	-	5974	2	FSM	ENSMUSG00000039568.7	ENSMUST00000143873.2	4749	2	-675	-550	-165	540	multi-exon	FALSE	canonical	0	0	junction_1	0	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCTGCTTAAAATGTTG	NA	False	NA	NA	False	NA	NA	NA	4698344	4692101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4692962_4693230
ES_00021779	chr16	-	1853	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	0	-2	0	2	multi-exon	FALSE	canonical	3	334	junction_1	8.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTAGTCTTGCCTCATAT	NA	False	NA	1	True	NA	NA	NA	4698179	4692639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4693734_4694225_4694286_4697480
ES_00021780	chr16	-	2168	11	FSM	ENSMUSG00000022515.7	ENSMUST00000230083.2	2144	11	0	-24	0	3	multi-exon	TRUE	canonical	3	59	junction_1	15.1871656341794	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGGGCTCATTTGTGAT	NA	False	NA	-2	True	AATAAA	-16	NA	4771747	4759296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4766228_4768476_4768633_4771682
ES_00021781	chr16	-	2401	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	0	-3	0	3	multi-exon	FALSE	canonical	3	59	junction_1	12.8608842522589	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGGGCTCATTTGTGAT	8223	False	NA	-2	True	AATAAA	-16	NA	4782037	4759296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ES_00021782	chr16	-	3496	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	6	0	intron_retention	FALSE	canonical	3	59	junction_1	13.1182654679988	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8210	False	NA	-5	True	AATAAA	-13	NA	4782050	4759299	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ES_00021783	chr16	-	2300	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	20.4717691793683	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTGGTGGGGGCTCATT	8229	False	NA	-8	True	AATAAA	-10	NA	4782031	4759302	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_4759662_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ES_00021787	chr16	-	1410	12	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	0	33482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.861772307464	231	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCTAAAGAGATAGCTTA	NA	False	NA	NA	False	NA	NA	NA	4831400	4793111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4793148_4826593_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ES_00021788	chr16	-	1408	12	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	0	33482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.861772307464	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCTAAAGAGATAGCTTA	NA	False	NA	NA	False	NA	NA	NA	4831400	4793111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4793148_4826595_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ES_00021789	chr16	-	1355	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831381	4826593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ES_00021791	chr16	-	3302	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	0	-10	0	10	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATTGTACCCAAATGCT	8116	False	NA	2	True	AATAAA	-23	NA	4867721	4831762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ES_00021792	chr16	-	3353	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	-65	-8	-65	8	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATCATTGTACCCAAATG	8045	False	NA	0	True	AATAAA	-21	NA	4867792	4831764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ES_00021795	chr16	-	2237	9	FSM	ENSMUSG00000023143.11	ENSMUST00000147567.2	2230	9	0	-7	0	7	multi-exon	FALSE	canonical	3	106	junction_1	8.42244026396151	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGGGCGTGTGAGGTCT	NA	False	NA	NA	False	AATAAA	-22	NA	5021866	5013145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204
ES_00021796	chr16	-	2150	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	0	-7	0	7	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGGGCGTGTGAGGTCT	NA	False	NA	NA	False	AATAAA	-22	NA	5021876	5013145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
ES_00021797	chr16	-	2170	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCGCATGTGCACAG	NA	False	NA	-2	True	NA	NA	NA	5073847	5062015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ES_00021798	chr16	-	987	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ES_00021799	chr16	-	845	5	FSM	ENSMUSG00000022544.15	ENSMUST00000230238.2	604	5	-24	-217	0	217	multi-exon	FALSE	canonical	3	27	junction_1	200.392115613364	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGGGCAGCACACTAGG	NA	False	NA	NA	False	NA	NA	NA	5073820	5066211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5066695_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ES_00021800	chr16	-	695	4	FSM	ENSMUSG00000022544.15	ENSMUST00000140718.3	695	4	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_2	5.24933858267454	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTGGTTACATGGGACG	NA	False	NA	NA	False	NA	NA	NA	5073793	5066850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5067313_5068338_5068420_5070888_5070952_5073704
ES_00021801	chr16	-	3390	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	0	1	0	-1	multi-exon	FALSE	canonical	3	58	junction_1	0	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCAGGGTTTTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	8455576	8451093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8454257_8455349
ES_00021802	chr16	-	2871	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	-13	0	13	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGTGTGTAGTTCTGG	NA	False	NA	2	True	AATAAA	-34	NA	8490019	8476430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
ES_00021803	chr16	-	4745	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	0	0	0	0	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8610172	8507458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
ES_00021804	chr16	-	4003	31	FSM	ENSMUSG00000022710.18	ENSMUST00000161046.9	4003	31	0	0	0	0	multi-exon	FALSE	canonical	2	328	junction_30	128.088897081502	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATACACTGAGAACATTG	6610	False	NA	NA	False	NA	NA	NA	8556206	8508009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8556067
ES_00021807	chr16	-	706	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8869	-42756	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	15	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTATCACTTTTGTACAA	NA	False	NA	NA	False	NA	NA	NA	8601303	8566579	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_8566919_8574679_8574937_8601193
ES_00021808	chr16	-	439	1	FSM	ENSMUSG00000068674.4	ENSMUST00000090395.4	330	1	-55	-54	-55	54	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGAGCTGGGCAGT	NA	False	NA	NA	False	AATAAA	-32	NA	8740308	8739869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8739900_8740300
ES_00021809	chr16	-	1321	1	NIC	ENSMUSG00000116348.2	novel	2363	2	NA	NA	952	-695	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCTCCACCACCAAAGCG	NA	False	NA	NA	False	NA	NA	NA	8924682	8923361	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_8923400_8924700
ES_00021810	chr16	-	3440	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGTATGGTGTTTGT	NA	False	NA	-5	True	ATTAAA	-31	NA	10131832	10099612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
ES_00021811	chr16	-	1639	7	FSM	ENSMUSG00000039179.14	ENSMUST00000043415.13	1803	7	160	4	118	-4	multi-exon	FALSE	canonical	2	3	junction_5	2.40947204913349	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTCTTTAGGAAAATG	NA	False	NA	0	True	AATAAA	-18	NA	10213194	10175815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10176300_10179121_10179277_10196760_10196984_10200653_10200798_10203926_10203998_10205018_10205103_10212716
ES_00021812	chr16	-	1390	2	FSM	ENSMUSG00000038055.13	ENSMUST00000038281.6	1389	2	0	-1	0	1	multi-exon	FALSE	canonical	3	61	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTTGTCTGTTG	NA	False	NA	1	True	ATTAAA	-21	NA	10360918	10348069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10348677_10360135
ES_00021813	chr16	-	1220	2	FSM	ENSMUSG00000038037.6	ENSMUST00000038099.6	2785	2	0	1565	0	-1565	multi-exon	FALSE	canonical	3	9	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTAGAGCGTATGCTT	NA	False	NA	NA	False	AATAAA	-36	NA	10603400	10601671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10602786_10603294
ES_00021814	chr16	-	2389	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	0	-154	0	154	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGAGTCATTTAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	10810985	10776984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ES_00021815	chr16	-	3101	12	FSM	ENSMUSG00000022498.17	ENSMUST00000038424.14	3095	12	0	-6	0	6	multi-exon	FALSE	canonical	3	63	junction_7	19.5329769897639	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATTTAGCATTTATTGA	8534	False	NA	NA	False	AATAAA	-35	NA	10952514	10892768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ES_00021817	chr16	-	4187	7	FSM	ENSMUSG00000022498.17	ENSMUST00000145225.8	2381	7	-94	-1712	-17	-4	multi-exon	FALSE	canonical	3	19	junction_2	35.2120560162125	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTCTGGTCTGAGATTA	8517	False	NA	NA	False	AATAAA	-10	NA	10952531	10903386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10906434_10909449_10909651_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ES_00021819	chr16	-	1160	5	NIC	ENSMUSG00000022498.17	novel	1145	5	NA	NA	-16	1	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	43.4798804046193	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGAACTCTTTATCTCT	8518	False	NA	NA	False	TTTAAA	-7	NA	10952530	10923819	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_10924136_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ES_00021821	chr16	-	3800	12	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	23707	8	62	-8	intron_retention	FALSE	canonical	3	126	junction_3	18.0068857353041	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	738	False	NA	-7	True	AATAAA	-20	NA	10970550	10954463	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002
ES_00021827	chr16	-	1910	10	Fusion	ENSMUSG00000037965.16_ENSMUSG00000005846.13	novel	1945	9	NA	NA	0	34	multi-exon	FALSE	non_canonical	0	0	junction_1	1127.46241896253	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAATCTAAGCCTA	1021	False	NA	NA	False	NA	NA	NA	11021128	10972012	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr16_-_10972048_11010836_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ES_00021830	chr16	-	1962	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	0	-17	0	17	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCACATCTCACCTGACT	954	False	NA	14	True	ATTAAA	-42	NA	11021195	11010816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ES_00021831	chr16	-	764	6	FSM	ENSMUSG00000005846.13	ENSMUST00000124454.2	764	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1127.73284070297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAGCAGAGTGTGT	1021	False	NA	NA	False	NA	NA	NA	11021128	11014307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ES_00021832	chr16	-	3716	15	FSM	ENSMUSG00000062203.16	ENSMUST00000167571.8	3716	15	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_12	261.982473319363	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGTCTGCAAATATCTG	NA	False	NA	NA	False	ATTAAA	-21	NA	11072134	11037155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056961_11058529_11058572_11058668_11058705_11071506
ES_00021833	chr16	-	2898	15	FSM	ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_12	224.149458156465	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTGTAAGTAAAGCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	11072073	11037915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056964_11058529_11058572_11058668_11058705_11071506
ES_00021834	chr16	-	2675	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	27	-39	0	39	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTTTCTGAATGTTC	NA	False	NA	-1	True	NA	NA	NA	11727260	11621545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
ES_00021836	chr16	-	2897	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	21	-12	0	12	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTTTGGTGTGACTGA	NA	False	NA	5	True	ATTAAA	-28	NA	13486013	13355811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
ES_00021838	chr16	-	1435	4	FSM	ENSMUSG00000022683.14	ENSMUST00000023364.7	1423	4	-10	-2	-10	0	multi-exon	FALSE	canonical	3	37	junction_3	8.17856276425687	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548857	13532920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220
ES_00021839	chr16	-	208	1	Intergenic	novelGene_1529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTGGAACTTTAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	13585720	13585512	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_13585500_13585700
ES_00021840	chr16	-	4228	24	FSM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_1	25.0911382243075	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTCTAGCTTCTACC	9988	False	NA	NA	False	NA	NA	NA	13720991	13651011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ES_00021841	chr16	-	2880	23	FSM	ENSMUSG00000022680.15	ENSMUST00000115804.9	2880	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	45.2457020469238	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGCTTTTGTTGCTGT	9804	False	NA	-17	True	NA	NA	NA	13720885	13652023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13652711_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ES_00021842	chr16	-	3214	23	NNC	ENSMUSG00000022680.15	novel	3178	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_21	35.4486300426522	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9804	False	NA	NA	False	NA	NA	NA	13720885	13653455	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702493_13705560_13705635_13720778
ES_00021843	chr16	-	3178	23	FSM	ENSMUSG00000022680.15	ENSMUST00000154150.8	3178	23	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_15	13.5268328374224	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9843	False	NA	NA	False	NA	NA	NA	13720846	13653455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ES_00021844	chr16	-	1037	8	NNC	ENSMUSG00000022680.15	novel	754	7	NA	NA	0	4391	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	89.1879464721459	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGGGCAG	9988	False	NA	NA	False	NA	NA	NA	13720991	13689450	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_13689651_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702493_13705560_13705635_13720778
ES_00021846	chr16	-	7758	27	FSM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	0	-7	0	7	multi-exon	TRUE	canonical	2	10	junction_23	10.0957692234429	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGCTTTTGTTTGTGGG	9816	False	NA	1	True	AATAAA	-23	NA	13977131	13927029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958237_13959506_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
ES_00021847	chr16	-	2278	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	-813	0	813	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGCAGCTTTATGCAT	NA	False	NA	-8	True	ATTAAA	-14	NA	14135239	14116294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ES_00021848	chr16	-	1151	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	0	-4	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135208	14117107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_14118074_14122317_14122452_14135157
ES_00021850	chr16	-	1236	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	698.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGACTATCAAAGACTT	NA	False	NA	NA	False	AAGAAA	-4	NA	15412371	15373368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15374408_15398922_15399072_15412323
ES_00021852	chr16	-	3589	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	0	0	0	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	15455264	15441760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ES_00021853	chr16	-	1061	4	NNC	ENSMUSG00000022671.14	novel	1035	3	NA	NA	0	13028	intron_retention	FALSE	non_canonical	0	0	junction_1	277.245178296916	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTCTTTGCCTTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	15681211	15653276	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_15653306_15666307_15666594_15680261_15680408_15680611
ES_00021854	chr16	-	1034	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	0	1	0	-1	multi-exon	FALSE	canonical	3	566	junction_1	21	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGTGGAGTCCTGGTT	NA	False	NA	-3	True	ATTAAA	-21	NA	15681211	15666305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15666594_15680261_15680408_15680611
ES_00021855	chr16	-	1191	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	-125	0	-66	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681299	15666309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
ES_00021856	chr16	-	762	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	0	-4	0	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681233	15666309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
ES_00021857	chr16	-	1070	4	NNC	ENSMUSG00000022671.14	novel	1066	4	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	257.016644510731	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681274	15666309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_15666594_15680261_15680408_15680611_15680797_15680819
ES_00021858	chr16	-	2943	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	47	292	0	-292	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATCAAGATACCTCTA	1994	False	NA	NA	False	TTTAAA	-2	NA	15964668	15707379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
ES_00021859	chr16	-	4917	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	0	1027	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTTTGTACTATAGTTTC	NA	False	NA	NA	False	AATAAA	-32	NA	16176729	16129066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ES_00021860	chr16	-	5093	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-51	1027	combination_of_known_junctions	FALSE	canonical	3	157	junction_17	327.192188774521	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTTTGTACTATAGTTTC	NA	False	NA	NA	False	AATAAA	-32	NA	16176874	16129066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16163861_16164010_16176627
ES_00021861	chr16	-	3938	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTGATGTGCTTCAAG	NA	False	NA	-4	True	AATAAA	-32	NA	16176729	16130090	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ES_00021862	chr16	-	4041	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176802	16130093	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ES_00021863	chr16	-	3969	19	FSM	ENSMUSG00000022789.16	ENSMUST00000096229.11	3966	19	0	-3	0	0	multi-exon	FALSE	canonical	3	21	junction_16	431.23241420576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176802	16130093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16160560_16160600_16163861_16164010_16176627
ES_00021864	chr16	-	4049	20	NIC	ENSMUSG00000022789.16	novel	3966	19	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_17	413.303996963273	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176804	16130093	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16160560_16160600_16163861_16164010_16176627
ES_00021865	chr16	-	3951	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176823	16130093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ES_00021868	chr16	-	1594	4	FSM	ENSMUSG00000022788.17	ENSMUST00000162542.8	1594	4	8	-8	8	8	multi-exon	FALSE	canonical	3	9	junction_3	3.39934634239519	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAACTCTTGAGACTAT	NA	False	NA	NA	False	AATAAA	-18	NA	16345267	16301326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16302462_16308286_16308471_16321960_16322081_16345112
ES_00021869	chr16	-	462	1	FSM	ENSMUSG00000116648.2	ENSMUST00000231756.2	375	1	-45	-42	-45	42	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATCAACAACATAT	NA	False	NA	NA	False	AATAAA	-21	NA	16638032	16637570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16637600_16638000
ES_00021870	chr16	-	222	1	Genic_Genomic	ENSMUSG00000116729.2	novel	NA	NA	NA	NA	-188	-814	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGAAGTATACCCGGTG	NA	False	NA	NA	False	AAAAAG	-15	NA	16667750	16667528	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_16667500_16667800
ES_00021871	chr16	-	767	2	FSM	ENSMUSG00000059305.13	ENSMUST00000075017.5	766	2	0	-1	0	1	multi-exon	FALSE	canonical	2	7	junction_1	0	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGTCTGGCTGGTTTGT	NA	False	NA	0	True	ATTAAA	-15	NA	16687119	16686265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16686843_16686929
ES_00021873	chr16	-	271	1	FSM	ENSMUSG00000055497.6	ENSMUST00000120357.2	693	1	373	49	373	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGGAGGTCTCCCTGC	NA	False	NA	NA	False	NA	NA	NA	16900182	16899911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16899900_16900200
ES_00021875	chr16	-	3091	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	0	-3	0	3	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAGAAAAATTTA	NA	False	NA	NA	False	AGTAAA	-43	NA	16929106	16905176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ES_00021883	chr16	-	1157	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	0	-1	0	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943004	16931261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
ES_00021886	chr16	-	2612	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	0	-3	0	1	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTATGGGTTTCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	17019356	16969875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ES_00021888	chr16	-	650	3	FSM	ENSMUSG00000038965.18	ENSMUST00000231643.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1084	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTACTCAAAGTTGC	NA	False	NA	50	True	NA	NA	NA	17019334	16971719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16972147_16977853_16978041_17019298
ES_00021889	chr16	-	6629	55	FSM	ENSMUSG00000041720.15	ENSMUST00000232232.2	6630	55	1	0	1	0	multi-exon	FALSE	canonical	3	103	junction_39	24.3659232686811	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTTGTTTTGTTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	17223756	17098215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17098485_17098580_17098665_17098883_17098974_17099712_17099873_17100149_17100271_17100480_17100607_17100686_17100792_17101163_17101274_17102310_17102382_17102459_17102533_17103070_17103142_17104515_17104646_17108978_17109100_17110743_17110798_17111706_17111875_17113235_17113327_17114759_17114954_17115073_17115154_17115414_17115535_17117305_17117434_17118856_17118965_17120854_17121007_17121148_17121308_17125566_17125695_17125929_17126087_17127169_17127263_17130215_17130336_17133412_17133503_17134825_17134910_17135157_17135240_17136143_17136269_17136346_17136418_17140851_17140935_17142976_17143111_17143257_17143395_17143804_17143914_17166578_17166630_17168625_17168795_17170601_17170706_17171913_17172098_17172734_17172831_17173947_17174081_17175409_17175540_17176150_17176252_17176758_17176951_17178360_17178458_17181810_17181877_17185267_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
ES_00021890	chr16	-	3071	8	FSM	ENSMUSG00000041720.15	ENSMUST00000231419.2	3855	8	1	783	1	-783	multi-exon	FALSE	canonical	3	160	junction_3	18.7442508192648	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCTAGACCATGTACAG	NA	False	NA	NA	False	NA	NA	NA	17223756	17183304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
ES_00021893	chr16	-	1230	5	NIC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	40.9206549312202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7202	False	NA	1	True	AATAAA	-19	NA	17348984	17345941	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_17346605_17346798_17346940_17348093_17348250_17348547_17348722_17348888
ES_00021894	chr16	-	1187	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	-57	-396	0	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGACTACATGCCCAGGC	7210	False	NA	-107	True	NA	NA	NA	17348976	17346049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
ES_00021896	chr16	-	3416	18	FSM	ENSMUSG00000012114.18	ENSMUST00000232236.2	3404	18	1	-13	1	0	multi-exon	FALSE	canonical	3	7	junction_1	67.9646254416125	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCATCTACCTTTTTGC	NA	False	NA	-10	True	AATAAA	-29	NA	17540810	17469071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17470128_17470568_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ES_00021898	chr16	-	3309	17	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	0	166	combination_of_known_junctions	FALSE	canonical	3	73	junction_13	54.6468420290688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACTTCCAGAAGCTAT	NA	False	NA	NA	False	NA	NA	NA	17540754	17468905	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ES_00021899	chr16	-	3240	17	FSM	ENSMUSG00000012114.18	ENSMUST00000080936.14	3230	17	0	-10	0	0	multi-exon	FALSE	canonical	3	37	junction_9	64.8068946467118	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCATCTACCTTTT	NA	False	NA	-13	True	AATAAA	-26	NA	17540761	17469074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ES_00021903	chr16	-	4020	11	NNC	ENSMUSG00000003166.21	novel	4003	10	NA	NA	0	75606	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	133.563468059196	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATAGGGGTGTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	17709518	17581739	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_17581767_17658222_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ES_00021905	chr16	-	5717	9	FSM	ENSMUSG00000003166.21	ENSMUST00000135229.8	5703	9	0	-14	0	14	multi-exon	FALSE	canonical	3	328	junction_2	56.0178542966437	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTTGTCCTCGGAT	NA	False	NA	NA	False	NA	NA	NA	17709518	17657331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17677391_17690426_17690550_17709249
ES_00021906	chr16	-	4003	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_7	73.3575717518876	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709524	17658218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ES_00021908	chr16	-	1401	7	ISM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	0	9025	0	-69	5prime_fragment	FALSE	canonical	3	236	junction_4	83.6932228770977	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGTTTACAGTTTAACT	NA	False	NA	0	True	AATAAA	-19	NA	17709524	17667243	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ES_00021911	chr16	-	653	3	FSM	ENSMUSG00000003527.10	ENSMUST00000232111.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTGCTGAGCGGGC	NA	False	NA	NA	False	NA	NA	NA	17725412	17722865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17722976_17724134_17724238_17724972
ES_00021917	chr16	-	2386	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	7943	False	NA	0	True	AATAAA	-20	NA	17907156	17889588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
ES_00021919	chr16	-	989	7	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	33	7360	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4639.41539959508	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCCAGACTGGGACAGT	7252	False	NA	NA	False	NA	NA	NA	18066477	18050287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18050313_18057649_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ES_00021920	chr16	-	1085	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	0	0	0	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7133	False	NA	-1	True	AATAAA	-22	NA	18066596	18057647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ES_00021923	chr16	-	3436	12	FSM	ENSMUSG00000022718.13	ENSMUST00000115633.3	3436	12	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_9	19.9238218644403	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATACTCTTCCGAGATTG	NA	False	NA	-14	True	AATAAA	-18	NA	18102399	18072803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987
ES_00021926	chr16	-	1585	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	52	junction_8	63.9256159532311	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGGCTTTTTCTAAAAAA	NA	False	NA	0	True	AATAAA	-20	NA	18161766	18118684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161661
ES_00021927	chr16	-	1521	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	100	1	-10	-1	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGAGTGTTGGCTTTTTC	NA	False	NA	-7	True	AATAAA	-13	NA	18161806	18118691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
ES_00021928	chr16	-	1644	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	42	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGAGTGTTGGCTTTTTC	NA	False	NA	-7	True	AATAAA	-13	NA	18165905	18118691	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
ES_00021933	chr16	-	1685	5	FSM	ENSMUSG00000000326.14	ENSMUST00000115609.10	1866	5	181	0	-67	0	multi-exon	FALSE	canonical	3	108	junction_4	51.7656981021216	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTGGAAGAGGAGATTT	3821	False	NA	NA	False	NA	NA	NA	18245421	18226015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ES_00021935	chr16	-	1164	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	200	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCTGATGGCCTCACTA	4088	False	NA	NA	False	NA	NA	NA	18245154	18226032	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18226058_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ES_00021936	chr16	-	1339	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	0	58	0	-58	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCACGCAAAACCCCTCAC	3888	False	NA	NA	False	NA	NA	NA	18245354	18226351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ES_00021937	chr16	-	562	1	FSM	ENSMUSG00000009097.11	ENSMUST00000232557.2	2349	1	1013	774	1013	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCGGCGCCGATTTCAT	9724	False	NA	NA	False	NA	NA	NA	18401065	18400503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18400500_18401100
ES_00021942	chr16	-	1829	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	-83	1	-83	-1	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCCCTCTGGGTCTGTGA	NA	False	NA	-9	True	AATAAA	-14	NA	18630459	18599203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
ES_00021945	chr16	-	1057	5	NNC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	0	18418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	768.173157562798	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAAGAAACTTTAACCAAA	NA	False	NA	NA	False	NA	NA	NA	18695359	18672349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18672379_18690766_18691413_18692286_18692446_18694073_18694158_18695220
ES_00021946	chr16	-	1281	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	0	-1	0	1	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCGTTTATTTTAATCA	NA	False	NA	-6	True	AATAAA	-16	NA	18695612	18690766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
ES_00021947	chr16	-	225	1	ISM	ENSMUSG00000041247.9	ENSMUST00000081880.7	3356	6	52146	627	52146	-627	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGTCCTCAGATCTGGA	NA	False	NA	NA	False	NA	NA	NA	19472979	19472754	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_19472800_19473000
ES_00021950	chr16	-	1362	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121095	20098569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
ES_00021951	chr16	-	1348	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	0	0	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
ES_00021956	chr16	-	5811	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_25	98.9917903368873	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20245144	20150052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ES_00021957	chr16	-	979	5	FSM	ENSMUSG00000022822.17	ENSMUST00000150340.2	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_4	42.7814212012645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGGCCATTCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	20215153	20197233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764
ES_00021960	chr16	-	4526	5	FSM	ENSMUSG00000022822.17	ENSMUST00000134962.2	4526	5	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	11.3578166916005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTATTTACTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	20245074	20219509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ES_00021961	chr16	-	1137	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	0	-1	0	0	multi-exon	FALSE	canonical	2	5	junction_1	91.9287163452688	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTATTTACTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	20245104	20219509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ES_00021962	chr16	-	1013	2	Intergenic	novelGene_1562	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAACACTAAACAAAG	NA	False	NA	NA	False	AATAAA	-18	NA	20273110	20270261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_20271065_20272900
ES_00021963	chr16	-	3518	1	FSM	ENSMUSG00000080797.3	ENSMUST00000231978.2	3245	1	530	-803	530	803	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCTAAAGGGATCTGATG	5495	False	NA	NA	False	NA	NA	NA	20366676	20363158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20363200_20366700
ES_00021965	chr16	-	1308	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429497	20424222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
ES_00021968	chr16	-	3128	24	FSM	ENSMUSG00000022843.18	ENSMUST00000007207.15	3128	24	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_10	37.9003269459341	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCTGTTGGCTCATAT	NA	False	NA	1	True	AATAAA	-39	NA	20534867	20521713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ES_00021969	chr16	-	999	6	FSM	ENSMUSG00000022843.18	ENSMUST00000144400.8	999	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	102.17514374837	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGACAGGAAGAGATGTG	NA	False	NA	NA	False	NA	NA	NA	20527876	20525923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20526029_20526168_20526208_20526592_20526667_20526826_20526942_20527043_20527217_20527383
ES_00021970	chr16	-	600	4	FSM	ENSMUSG00000022843.18	ENSMUST00000123417.2	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	8.17856276425687	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTCCATCCCATCCTT	NA	False	NA	NA	False	NA	NA	NA	20527484	20526455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20526667_20526826_20526942_20527043_20527217_20527383
ES_00021974	chr16	-	1620	6	FSM	ENSMUSG00000022847.16	ENSMUST00000232217.2	1620	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9.9196774141098	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGCGATCTTTGGTCTAT	NA	False	NA	-52	True	NA	NA	NA	20549377	20543961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547684_20547813_20547968_20549252
ES_00021976	chr16	-	533	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	-41	4	-41	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGAAGTTGGAGTTTATG	NA	False	NA	NA	False	NA	NA	NA	20641431	20640898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20640900_20641400
ES_00021979	chr16	-	1234	2	FSM	ENSMUSG00000043391.11	ENSMUST00000231592.2	1135	2	-61	-38	-25	38	multi-exon	FALSE	canonical	3	24	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGTAAACCCTTCAGCCTT	NA	False	NA	41	True	NA	NA	NA	21513440	21495433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_21496193_21512965
ES_00021980	chr16	-	2983	7	FSM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	0	-2	0	2	multi-exon	FALSE	canonical	3	14	junction_3	3.35410196624968	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGTGTAAAAAACTGTT	NA	False	NA	NA	False	AATAAA	-21	NA	21606557	21580034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_21582087_21584975_21585318_21589165_21589271_21592244_21592357_21594094_21594262_21596548_21596653_21606456
ES_00021981	chr16	-	1363	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	-3	0	3	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGGTTCTGAATGTGTT	9190	False	NA	1	True	ATTAAA	-19	NA	21766302	21753072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
ES_00021982	chr16	-	3808	11	NNC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	2	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.2891787338586	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGATGATTAATACTAT	NA	False	NA	NA	False	NA	NA	NA	21814261	21772509	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_21774117_21774136_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21803019_21814070
ES_00021987	chr16	-	3394	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	18	-9	18	9	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACGTGTGGGTATTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	22084737	22063289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ES_00021989	chr16	-	3704	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	119	junction_8	731.055553444622	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACGTGTGGGTATTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	22084650	22063289	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
ES_00021990	chr16	-	3594	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	-1907	0	-6	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATAAGTACATAATGAATA	NA	False	NA	NA	False	AATAAA	-16	NA	22084676	22063304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ES_00021993	chr16	-	4018	13	FSM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	-31	-12	-31	12	multi-exon	FALSE	canonical	3	174	junction_9	424.638105724549	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTTCTTGCACTCGGT	7455	False	NA	-1	True	AATAAA	-34	NA	22258500	22200046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
ES_00021994	chr16	-	2651	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	0	-6	0	0	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	22676417	22631963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
ES_00021996	chr16	-	3418	8	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	-27	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	32.3772406836301	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTGTGCCAGAGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	22676446	22631965	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
ES_00021997	chr16	-	3304	9	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	36	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	47.3339201841555	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTACTGTGCCAGAGT	NA	False	NA	NA	False	AATAAA	-16	NA	22676254	22631968	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22642116_22642198_22644515_22644883_22652627_22652784_22660478_22660858_22675504
ES_00021998	chr16	-	2741	9	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	9	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	44.8718661858408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTACTGTGCCAGAGT	NA	False	NA	NA	False	AATAAA	-16	NA	22676281	22631968	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22642116_22642198_22644515_22644883_22652627_22652784_22660478_22660858_22676094
ES_00021999	chr16	-	2489	7	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	136	4444	9	-251	5prime_fragment	FALSE	canonical	3	49	junction_6	23.3410701458942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGAGTGGTTTGCCTTCA	NA	False	NA	NA	False	AAGAAA	-18	NA	22676281	22636413	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
ES_00022000	chr16	-	1509	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232681.2	1371	4	-138	0	-11	0	multi-exon	FALSE	canonical	3	51	junction_3	30.539591789457	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676430	22644244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676094
ES_00022002	chr16	-	1287	10	FSM	ENSMUSG00000022881.16	ENSMUST00000115338.8	1279	10	0	-8	0	0	multi-exon	FALSE	canonical	2	1237	junction_9	172.55065457732	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946467	22932692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ES_00022003	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946487	22932692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ES_00022004	chr16	-	851	7	FSM	ENSMUSG00000022881.16	ENSMUST00000133847.9	862	7	11	0	11	0	multi-exon	FALSE	canonical	3	1488	junction_1	82.4231965731331	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAGATTTACGGAAAG	NA	False	NA	NA	False	NA	NA	NA	22946430	22933456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149
ES_00022006	chr16	-	2586	3	ISM	ENSMUSG00000022887.10	ENSMUST00000229619.2	3786	11	44246	-5	44192	5	3prime_fragment	FALSE	canonical	1	3	junction_1	1.5	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGAGAGTTTGTTGCG	NA	False	NA	5	True	AATAAA	-22	NA	23295154	23287107	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_23289481_23293623_23293699_23295016
ES_00022008	chr16	-	3306	10	FSM	ENSMUSG00000022508.6	ENSMUST00000023151.6	3525	10	219	0	219	0	multi-exon	FALSE	canonical	0	0	junction_5	2.06080411011016	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGCTCTTTCTGAGGA	NA	False	NA	-1	True	AATAAA	-14	NA	23807383	23783801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_23785019_23786809_23786948_23787056_23787188_23788655_23788824_23790164_23790350_23790994_23791970_23793562_23793785_23796264_23796437_23797300_23797340_23807324
ES_00022009	chr16	-	376	1	FSM	ENSMUSG00000115852.3	ENSMUST00000231284.2	934	1	615	-57	194	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGCAAGGCCAAAGACTG	1229	False	NA	NA	False	AGTAAA	-16	NA	24198680	24198304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_24198300_24198700
ES_00022010	chr16	-	3365	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	-310	0	-310	0	multi-exon	FALSE	canonical	3	119	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4487	False	NA	0	True	AATAAA	-24	NA	28748735	28644927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_28647762_28748204
ES_00022015	chr16	-	494	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-22	31135	-21	5721	5prime_fragment	FALSE	canonical	3	93	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACATTTATTTGTTTGTT	NA	False	NA	NA	False	TATAAA	-18	NA	29765356	29757476	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_29757886_29765271
ES_00022016	chr16	-	2010	2	FSM	ENSMUSG00000097621.2	ENSMUST00000181113.2	2010	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTCGTCAGGAT	NA	False	NA	NA	False	NA	NA	NA	30024697	30019727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30021658_30024617
ES_00022017	chr16	-	5311	2	FSM	ENSMUSG00000052316.10	ENSMUST00000064606.8	5310	2	0	-1	0	1	multi-exon	FALSE	canonical	3	13	junction_1	0	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTTCTCTGTGGACG	NA	False	NA	0	True	AATAAA	-16	NA	30102074	30088118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30093341_30101985
ES_00022018	chr16	-	7535	33	FSM	ENSMUSG00000022533.15	ENSMUST00000061350.13	7220	33	-307	-8	0	8	multi-exon	TRUE	canonical	3	211	junction_18	25.9578986052415	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTCCTGGATCCTTA	NA	False	NA	NA	False	AATAAA	-27	NA	30207655	30131232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30134720_30141689_30141771_30147773_30147863_30151016_30151205_30152576_30152746_30155007_30155081_30156319_30156417_30157249_30157360_30157444_30157488_30158430_30158511_30158593_30158717_30159040_30159217_30159970_30160096_30162251_30162373_30162460_30162615_30162707_30162726_30163339_30163457_30166443_30166595_30166867_30166930_30168502_30168692_30169780_30169939_30170046_30170227_30171085_30171218_30173049_30173123_30174570_30174706_30176022_30176093_30178486_30178568_30180237_30180309_30180631_30180803_30181393_30181568_30185652_30185754_30206424_30206471_30207165
ES_00022019	chr16	-	7623	34	FSM	ENSMUSG00000022533.15	ENSMUST00000100013.9	7310	34	-307	-6	0	6	multi-exon	FALSE	canonical	3	161	junction_1	36.4499984569475	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTTTCCTGGATCCT	NA	False	NA	NA	False	AATAAA	-25	NA	30207655	30131234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30134720_30140623_30140714_30141689_30141771_30147773_30147863_30151016_30151205_30152576_30152746_30155007_30155081_30156319_30156417_30157249_30157360_30157444_30157488_30158430_30158511_30158593_30158717_30159040_30159217_30159970_30160096_30162251_30162373_30162460_30162615_30162707_30162726_30163339_30163457_30166443_30166595_30166867_30166930_30168502_30168692_30169780_30169939_30170046_30170227_30171085_30171218_30173049_30173123_30174570_30174706_30176022_30176093_30178486_30178568_30180237_30180309_30180631_30180803_30181393_30181568_30185652_30185754_30206424_30206471_30207165
ES_00022021	chr16	-	2405	10	FSM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4.30618275001691	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGCTCTCGGCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30369396	30332508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
ES_00022022	chr16	-	3176	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	0	4	0	-4	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	1496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGAATTCACAGTTAAGAA	NA	False	NA	NA	False	ATTAAA	-15	NA	30406410	30379315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
ES_00022024	chr16	-	2724	11	FSM	ENSMUSG00000022538.21	ENSMUST00000144666.8	2724	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	184.063684631162	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGTTTGGTCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	30406410	30386830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30396616_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
ES_00022025	chr16	-	780	2	FSM	ENSMUSG00000022538.21	ENSMUST00000231238.2	780	2	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGCCTGGGCTGTGCAC	NA	False	NA	NA	False	GATAAA	-30	NA	30394061	30392105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30392188_30393363
ES_00022028	chr16	-	3487	4	FSM	ENSMUSG00000047434.15	ENSMUST00000055389.9	3470	4	0	-17	0	17	multi-exon	FALSE	canonical	3	135	junction_2	21.3124898175277	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAGAAAAAACAGTAA	NA	False	NA	12	True	ATTAAA	-29	NA	30900250	30773944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30776553_30826531_30826665_30869449_30869598_30899652
ES_00022029	chr16	-	6560	24	FSM	ENSMUSG00000049076.13	ENSMUST00000231125.2	2334	24	-289	-3937	-35	3	multi-exon	FALSE	canonical	3	15	junction_14	39.6330522162666	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTAAGTGCTCCAGCTCC	NA	False	NA	-17	True	AATAAA	-24	NA	31020098	30911226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30941438_30941460_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
ES_00022030	chr16	-	3414	23	FSM	ENSMUSG00000049076.13	ENSMUST00000230614.2	3414	23	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_10	14.8474334816404	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATCTTGTGTACTAT	NA	False	NA	NA	False	AATAAA	-19	NA	31019980	30914233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
ES_00022032	chr16	-	1260	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	0	-302	0	302	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGAAGCCTAGCGGTT	NA	False	NA	NA	False	NA	NA	NA	31093810	31076490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ES_00022033	chr16	-	1350	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	194	530	-20	400	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGGCCTCGAACTCAGA	8690	False	NA	NA	False	NA	NA	NA	31133432	31115539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
ES_00022037	chr16	-	6332	10	FSM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	8.64670064815276	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTTCTGTTGTGTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	31822105	31778489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
ES_00022038	chr16	-	3385	10	FSM	ENSMUSG00000022772.13	ENSMUST00000023457.13	3370	10	-15	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	18.3168275866621	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGGATTTTTTTTTC	NA	False	NA	NA	False	CATAAA	-22	NA	31821996	31781323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821813
ES_00022039	chr16	-	283	1	FSM	ENSMUSG00000081404.2	ENSMUST00000121984.2	283	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGACCCTACCCTAGGT	NA	False	NA	NA	False	NA	NA	NA	31806278	31805995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31806000_31806300
ES_00022040	chr16	-	1023	1	FSM	ENSMUSG00000080928.2	ENSMUST00000119503.2	616	1	-104	-303	-104	303	mono-exon	FALSE	NA	NA	NA	NA	NA	1175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTAGTTTGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	31810790	31809767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31809800_31810800
ES_00022041	chr16	-	5741	15	FSM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	23.9404021925877	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAATTTCCATTTTTGTC	NA	False	NA	-10	True	AATAAA	-22	NA	31898160	31835107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401_31850520_31852604_31852718_31853712_31853762_31856062_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
ES_00022043	chr16	-	1137	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918536	31903233	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
ES_00022044	chr16	-	986	6	FSM	ENSMUSG00000023791.19	ENSMUST00000189013.8	982	6	-1	-3	0	1	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTAGTTTGTCTTCATTA	NA	False	NA	1	True	AATAAA	-31	NA	31918546	31903232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ES_00022045	chr16	-	1002	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	0	-9	0	1	multi-exon	FALSE	canonical	3	398	junction_3	17.8258239641258	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTAGTTTGTCTTCATTA	NA	False	NA	1	True	AATAAA	-31	NA	31918556	31903232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
ES_00022046	chr16	-	713	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCTAATAAATGAGAC	NA	False	NA	-43	True	NA	NA	NA	31918525	31903276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
ES_00022050	chr16	-	2540	3	FSM	ENSMUSG00000052384.15	ENSMUST00000099991.11	2548	3	8	0	8	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTTGTGTAATGTCCT	NA	False	NA	NA	False	AATAAA	-33	NA	31984395	31961602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31963824_31966370_31966492_31984197
ES_00022052	chr16	-	208	1	FSM	ENSMUSG00000116900.2	ENSMUST00000232196.2	515	1	-2	309	-2	-309	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGTCTGTTTTCCACCAT	2497	False	NA	NA	False	NA	NA	NA	32145515	32145307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32145300_32145500
ES_00022053	chr16	-	2618	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTTTGAACTGTGT	NA	False	NA	NA	False	TTTAAA	-34	NA	32306697	32293321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
ES_00022055	chr16	-	5278	19	FSM	ENSMUSG00000035629.20	ENSMUST00000040986.15	5257	19	0	-21	0	0	multi-exon	FALSE	canonical	3	55	junction_16	7.31732258934531	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACGACTGTGGAATGGT	NA	False	NA	-14	True	AATAAA	-36	NA	32688721	32642076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32688462
ES_00022058	chr16	-	206	1	Intergenic	novelGene_1601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGTTATAGCCAG	NA	False	NA	NA	False	NA	NA	NA	33206448	33206242	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_33206200_33206400
ES_00022059	chr16	-	3443	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	-56	-104	-21	92	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCTTCACAAGATGCTT	8619	False	NA	NA	False	NA	NA	NA	33787429	33775059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
ES_00022060	chr16	-	3484	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ES_00022061	chr16	-	717	2	Genic_Genomic	ENSMUSG00000116835.2	novel	615	1	NA	NA	0	39118	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	33827827	33788094	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_33788132_33827147
ES_00022063	chr16	-	3025	16	FSM	ENSMUSG00000061751.17	ENSMUST00000232157.2	2690	16	0	-335	0	321	multi-exon	FALSE	canonical	3	12	junction_2	6.74157910944379	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTGCTTTTCTCACAGC	NA	False	NA	NA	False	NA	NA	NA	33916398	33833180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
ES_00022064	chr16	-	3039	16	FSM	ENSMUSG00000061751.17	ENSMUST00000114964.8	2693	16	-11	-335	-11	321	multi-exon	FALSE	canonical	3	14	junction_2	6.46701030014815	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTGCTTTTCTCACAGC	NA	False	NA	NA	False	NA	NA	NA	33916409	33833180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
ES_00022065	chr16	-	2816	17	FSM	ENSMUSG00000061751.17	ENSMUST00000114966.8	3857	17	1041	0	-21	0	multi-exon	FALSE	canonical	2	3	junction_13	10.0343161201947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGGTCAAAGGTTAGT	NA	False	NA	-1	True	AATAAA	-21	NA	33916419	33833506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33870199_33870293_33873929_33874035_33875201_33875486_33916165
ES_00022069	chr16	-	334	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	-43	-55	-43	55	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGGGGGAATCACACAC	NA	False	NA	0	True	AATAAA	-20	NA	35393969	35393635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_35393600_35394000
ES_00022070	chr16	-	5389	9	FSM	ENSMUSG00000022848.9	ENSMUST00000023554.9	5395	9	0	6	0	-6	multi-exon	FALSE	canonical	3	128	junction_5	11.439378261077	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTCAGTTAATGTTAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	35589726	35514437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_35518391_35525123_35525307_35539681_35539810_35543122_35543191_35550655_35550765_35554306_35554437_35555755_35556022_35570865_35570960_35589268
ES_00022071	chr16	-	7413	17	FSM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	0	4	0	-4	multi-exon	FALSE	canonical	1	2	junction_15	4.31883592533914	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTCTCTTGGTGGAAT	NA	False	NA	NA	False	AGTAAA	-18	NA	35691914	35653247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35661692_35661778_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852_35679135_35680799_35681037_35683729_35683964_35685488_35685523_35686518_35686659_35691536
ES_00022072	chr16	-	5296	5	FSM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	3	10	3	-10	multi-exon	FALSE	canonical	3	12	junction_3	7.25861557047899	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAACAGACTGTGTGGTT	9997	False	NA	-4	True	AATAAA	-14	NA	35759518	35746890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_35749739_35751742_35751961_35752645_35754170_35756746_35756998_35759063
ES_00022073	chr16	-	2634	3	FSM	ENSMUSG00000049502.18	ENSMUST00000114885.3	2649	3	3	12	3	-12	multi-exon	FALSE	canonical	3	12	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCACCACCACCTGGCCT	9997	False	NA	NA	False	NA	NA	NA	35759518	35752241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_35754170_35756746_35756998_35759063
ES_00022074	chr16	-	209	2	Antisense	novelGene_ENSMUSG00000022905.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1156	junction_1	0	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAAACATGTGGATGTT	NA	False	NA	NA	False	NA	NA	NA	35819393	35811226	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_35811384_35819341
ES_00022076	chr16	-	640	5	FSM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	448.847621693599	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	False	NA	-5	True	AATACA	-14	NA	35891739	35864215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891686
ES_00022078	chr16	-	758	4	FSM	ENSMUSG00000022838.15	ENSMUST00000147053.2	667	4	-91	0	-41	0	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAGAATAAATATTCCTA	8159	False	NA	NA	False	AAAACA	-30	NA	36648664	36614186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36648412
ES_00022080	chr16	-	3102	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	0	-18	0	18	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGTACACTAATGAGGAAC	NA	False	NA	NA	False	ATTAAA	-41	NA	37360151	37330133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
ES_00022082	chr16	-	3278	5	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	117.992584512757	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360169	37330151	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37359838
ES_00022083	chr16	-	462	4	NNC	ENSMUSG00000022820.5	novel	971	3	NA	NA	0	57796	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2852.48289506995	163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGGATCCCATGAGACAT	NA	False	NA	NA	False	NA	NA	NA	37474728	37409735	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37409752_37467966_37468082_37469375_37469520_37474541
ES_00022087	chr16	-	496	4	NNC	ENSMUSG00000022820.5	novel	971	3	NA	NA	0	43341	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3035.03293044555	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAGAAAGCATAA	NA	False	NA	NA	False	NA	NA	NA	37474728	37424190	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37424233_37467961_37468082_37469375_37469523_37474541
ES_00022089	chr16	-	490	4	NNC	ENSMUSG00000022820.5	novel	971	3	NA	NA	0	43341	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3035.03293044555	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAGAAAGCATAA	NA	False	NA	NA	False	NA	NA	NA	37474728	37424190	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37424232_37467966_37468082_37469375_37469523_37474541
ES_00022090	chr16	-	971	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	0	0	0	0	multi-exon	FALSE	canonical	3	6062	junction_1	348	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGCTGGAACGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	37474815	37467531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_37468082_37469375_37469523_37474541
ES_00022092	chr16	-	697	1	FSM	ENSMUSG00000116529.2	ENSMUST00000231714.2	571	1	-29	-97	-29	97	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGACACCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-20	NA	37517731	37517034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_37517000_37517700
ES_00022093	chr16	-	1498	8	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23180	4	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	14.2571142284282	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTTTGTAAAGCTTTTT	NA	False	NA	1	True	AATAAA	-20	NA	38138994	38118111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
ES_00022094	chr16	-	1555	10	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	2059	2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_9	86.1821212589442	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGTTGTTTTGTTGAA	NA	False	NA	-1	True	AATAAA	-22	NA	38236097	38216476	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38235974
ES_00022095	chr16	-	1666	9	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	17417	-3	2066	3	3prime_fragment	FALSE	canonical	3	19	junction_8	85.3097298085043	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTTGTTTTGTTGAAA	NA	False	NA	0	True	AATAAA	-23	NA	38236090	38216475	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679
ES_00022099	chr16	-	685	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	0	-7	0	7	multi-exon	FALSE	canonical	3	26	junction_1	91	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTATTTAATATTTAGT	NA	False	NA	3	True	ATTAAA	-26	NA	38343003	38337014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_38337233_38338728_38338895_38342702
ES_00022100	chr16	-	3388	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	-466	0	463	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGAGAAACCCTGTCT	6266	False	NA	NA	False	NA	NA	NA	38370584	38345035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
ES_00022101	chr16	-	2933	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	36	-211	0	211	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTGAAACCCTTCACTAA	6266	False	NA	NA	False	NA	NA	NA	38370584	38345287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ES_00022104	chr16	-	3026	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCATTGTTTTTTGTA	NA	False	NA	NA	False	AATAAA	-24	NA	43710019	43681765	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ES_00022109	chr16	-	5713	5	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	10.9857862713599	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGTGGTTGTTGGTGT	NA	False	NA	-1	True	AATAAA	-20	NA	43800178	43785395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799540_43799982
ES_00022112	chr16	-	1347	4	FSM	ENSMUSG00000036304.15	ENSMUST00000232055.2	1347	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	23.1564725772779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATTTCCACCGCCCACT	NA	False	NA	NA	False	NA	NA	NA	43799525	43789440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43789777_43791761_43791819_43793830_43794530_43799270
ES_00022113	chr16	-	2072	3	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	1	-5129	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTGGCTTTTGCTGTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	43800153	43794637	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_43796109_43799270_43799540_43799821
ES_00022114	chr16	-	3316	13	FSM	ENSMUSG00000036292.15	ENSMUST00000036174.10	3501	13	118	67	118	-67	multi-exon	FALSE	canonical	1	1	junction_12	2.0138409955991	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTAGAATTAATGAGATCT	NA	False	NA	NA	False	GATAAA	-14	NA	43836681	43800784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43802502_43803503_43803610_43803870_43803982_43807284_43807343_43808443_43808621_43810130_43810235_43810985_43811129_43812421_43812541_43818088_43818227_43825822_43825986_43829767_43829901_43833284_43833401_43836450
ES_00022115	chr16	-	4238	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	0	-4	0	4	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCCTTTTTATTCTTT	NA	False	NA	4	True	AATAAA	-22	NA	43959668	43905760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ES_00022116	chr16	-	3896	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	1654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCAGTTCTCTATTTA	NA	False	NA	-11	True	AATATA	-17	NA	43959559	43906007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ES_00022119	chr16	-	832	6	FSM	ENSMUSG00000022668.11	ENSMUST00000023348.11	836	6	4	0	4	0	multi-exon	FALSE	canonical	3	17	junction_5	38.0473389345431	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566718	44559504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566562
ES_00022122	chr16	-	4166	7	FSM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	19	48	19	-48	multi-exon	FALSE	canonical	3	47	junction_3	4.7404875511093	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTGTGAACTTATTT	NA	False	NA	NA	False	ATTAAA	-15	NA	44979050	44959983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
ES_00022123	chr16	-	2324	6	FSM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	31	-8	1	8	multi-exon	FALSE	canonical	3	12	junction_1	7.98498591107085	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTCTCTATGCG	NA	False	NA	NA	False	AATAAA	-15	NA	45229385	45202489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584_45220667_45229218
ES_00022124	chr16	-	281	2	FSM	ENSMUSG00000022661.15	ENSMUST00000172091.2	281	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTGAAGCCTATCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	45229381	45227556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_45227675_45229218
ES_00022127	chr16	-	2612	4	NIC	ENSMUSG00000033157.18	novel	827	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTGAGTCCTGTGCA	NA	False	NA	-4	True	NA	NA	NA	45563265	45550086	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
ES_00022130	chr16	-	5496	18	FSM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	0	-13	0	13	multi-exon	TRUE	canonical	3	48	junction_15	7.72315083521806	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTTCTCCTCTCTCTCTC	NA	False	NA	3	True	ATTAAA	-26	NA	45664741	45566592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
ES_00022132	chr16	-	1589	7	FSM	ENSMUSG00000022656.16	ENSMUST00000096052.9	1746	7	0	157	0	-157	multi-exon	FALSE	canonical	3	13	junction_2	112.29784305834	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTTGTGTTAATTTTT	NA	False	NA	0	True	AATAAA	-17	NA	46317215	46256498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_46256802_46258292_46258432_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
ES_00022133	chr16	-	3062	6	FSM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_1	19.3328735577513	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAGATTTTTGGGGGTT	NA	False	NA	-7	True	ATTAAA	-13	NA	46317330	46267531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
ES_00022134	chr16	-	732	2	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	705	junction_1	0	212	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTGGCTGTGAAGAC	NA	False	NA	-3	True	AATAAA	-33	NA	48422140	48420464	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_48421063_48422006
ES_00022135	chr16	-	552	2	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATCTTCAGAAGACAGCA	NA	False	NA	NA	False	GATAAA	-45	NA	48422152	48420765	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_48421063_48421897
ES_00022137	chr16	-	6221	31	NIC	ENSMUSG00000064061.14	novel	3331	31	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_18	22.9540846038347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4421	False	NA	-7	True	AATAAA	-18	NA	48814304	48744594	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_48747709_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ES_00022138	chr16	-	6845	32	NIC	ENSMUSG00000064061.14	novel	5820	32	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	21.2442316342938	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTATGTATTCATCTT	4421	False	NA	-1	True	AATAAA	-24	NA	48814304	48744588	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_48747709_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ES_00022139	chr16	-	5806	32	FSM	ENSMUSG00000064061.14	ENSMUST00000121869.8	5820	32	20	-6	20	6	multi-exon	FALSE	canonical	3	63	junction_19	19.7691147506127	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTATGTATTCATCTT	4217	False	NA	-1	True	AATAAA	-24	NA	48814508	48744588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ES_00022140	chr16	-	5015	32	NNC	ENSMUSG00000064061.14	novel	5820	32	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_19	26.3645301405456	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4435	False	NA	-7	True	AATAAA	-18	NA	48814290	48744594	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48771957_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ES_00022144	chr16	-	8736	17	FSM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	7	0	6	0	multi-exon	FALSE	canonical	1	5	junction_15	4.24079886342184	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCAAATACATTTCTTT	9721	False	NA	-1	True	AATAAA	-35	NA	50252746	50012206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
ES_00022145	chr16	-	1479	1	FSM	ENSMUSG00000083692.2	ENSMUST00000122140.2	1339	1	38	-178	38	178	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTCTTTCTAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	50486671	50485192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_50485200_50486700
ES_00022149	chr16	-	7907	11	FSM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	5	-1	4	1	multi-exon	TRUE	canonical	3	23	junction_5	7.29383301152419	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGATATCTGGTTATTT	NA	False	NA	0	True	AATAAA	-16	NA	55755213	55720249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ES_00022150	chr16	-	609	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121703.3	609	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	14.2653426176871	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTATCGAGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	55755196	55744918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55745043_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ES_00022151	chr16	-	1911	1	FSM	ENSMUSG00000102101.2	ENSMUST00000186480.2	1350	1	42	-603	42	603	mono-exon	FALSE	NA	NA	NA	NA	NA	495	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAACCCAGGAACTGTT	4017	False	NA	NA	False	AAAAAG	-8	NA	55794938	55793027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55793000_55794900
ES_00022153	chr16	-	2226	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	0	9502	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	991.52980792309	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCCTAGATTATAAAGATGA	NA	False	NA	NA	False	NA	NA	NA	55850059	55818105	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55818133_55835869_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ES_00022154	chr16	-	2474	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	0	9502	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	932.109564375347	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCCTAGATTATAAAGATGA	NA	False	NA	NA	False	NA	NA	NA	55850059	55818105	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55818133_55835869_55837681_55838834_55838891_55842417_55842490_55844586_55845001_55849965
ES_00022155	chr16	-	2256	6	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	0	4852	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	887.036323946207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGGCTGCTCCATAGAG	NA	False	NA	NA	False	NA	NA	NA	55850039	55822755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55822782_55835870_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ES_00022157	chr16	-	2402	7	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	0	4852	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.78996738433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGGCTGCTCCATAGAG	NA	False	NA	NA	False	NA	NA	NA	55850059	55822755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55822783_55835869_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
ES_00022158	chr16	-	2200	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850059	55835868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ES_00022159	chr16	-	2294	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	1	0	-1	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	55850102	55835869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ES_00022160	chr16	-	2228	5	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_3	822.958800609119	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	55850039	55835869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55837681_55838834_55838891_55842417_55842490_55844586_55844802_55849965
ES_00022162	chr16	-	1084	5	NNC	ENSMUSG00000071533.12	novel	938	5	NA	NA	-1991	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	988.604824993283	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATGTTTTATATACAG	789	False	NA	NA	False	AATAAA	-22	NA	55847022	55837363	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55846800
ES_00022165	chr16	-	746	4	FSM	ENSMUSG00000071533.12	ENSMUST00000122253.2	792	4	0	46	0	-46	multi-exon	FALSE	canonical	3	1778	junction_3	312.848206004126	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGGATTAAAACATCGAC	NA	False	NA	NA	False	NA	NA	NA	55850059	55838528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55838891_55842417_55842493_55844586_55844802_55849965
ES_00022167	chr16	-	2072	2	Antisense	novelGene_ENSMUSG00000052917.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	133	junction_1	0	493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCATCTTTACTATCAT	4060	False	NA	NA	False	NA	NA	NA	55936673	55932272	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_55934262_55936590
ES_00022168	chr16	-	1948	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	0	-3	0	3	multi-exon	FALSE	canonical	3	474	junction_2	54.3950027716757	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGTTGCCTAATTAT	NA	False	NA	3	True	AATAAA	-19	NA	56537813	56510691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
ES_00022171	chr16	-	3701	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	0	-11	0	11	multi-exon	TRUE	canonical	3	134	junction_12	18.4520326427881	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGATGTCTGTTCTCTTTA	NA	False	NA	7	True	AATAAA	-33	NA	57051867	56989213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
ES_00022173	chr16	-	1158	10	FSM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	0	-8	0	8	multi-exon	TRUE	canonical	3	200	junction_5	24.152805731247	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTCCCCTCTGCTTTG	NA	False	NA	-1	True	AATAAA	-40	NA	57427209	57122354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57427028
ES_00022174	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	57427227	57381795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_57382126_57427028
ES_00022176	chr16	-	3769	7	FSM	ENSMUSG00000022723.17	ENSMUST00000129762.2	4378	7	609	0	609	0	multi-exon	FALSE	canonical	2	4	junction_3	2.26691175145591	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATACAAGCTGTGTTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59345368	59311137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_59314049_59315029_59315190_59315972_59316132_59323487_59323612_59326543_59326684_59342446_59342577_59345223
ES_00022177	chr16	-	1684	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	0	12	0	-12	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATAACTGACTTATTT	NA	False	NA	NA	False	AATAAA	-9	NA	59459530	59433323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ES_00022179	chr16	-	3554	6	FSM	ENSMUSG00000050312.13	ENSMUST00000143314.8	3565	6	11	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	5.49181208709839	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607129	62552806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596747_62606150_62606261_62607033
ES_00022180	chr16	-	3524	10	FSM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	11	-7	11	7	multi-exon	FALSE	canonical	3	30	junction_2	10.3494497975067	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAATTTTAAAAGATTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	62667392	62614040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
ES_00022181	chr16	-	5499	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	23	0	23	0	multi-exon	FALSE	canonical	3	170	junction_1	18.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCTTATATTTTAAAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	64591501	64582498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_64587357_64589286_64589526_64591099
ES_00022182	chr16	-	1377	3	NNC	ENSMUSG00000059920.10	novel	5522	3	NA	NA	195	-3947	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	94	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGGTAATGTTTTCATT	NA	False	NA	3	True	AATAAA	-41	NA	64591329	64586445	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_64587354_64589286_64589526_64591099
ES_00022183	chr16	-	6383	9	FSM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	-117	-5	-117	5	multi-exon	FALSE	canonical	3	157	junction_4	10.7812047100498	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTCAGTTTTATGTAGTA	NA	False	NA	2	True	AATAAA	-25	NA	64672132	64600704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_64603640_64604869_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
ES_00022185	chr16	-	1876	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	-4	0	4	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAACGCGCATCATTGT	NA	False	NA	-4	True	AATAAA	-23	NA	65359612	65336009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
ES_00022186	chr16	-	2022	7	FSM	ENSMUSG00000004843.8	ENSMUST00000231259.2	1722	7	-297	-3	-91	3	multi-exon	FALSE	canonical	1	1	junction_6	119.881422895941	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTAACGCGCATCATTG	NA	False	NA	-5	True	AATAAA	-22	NA	65359703	65336010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65350904_65350961_65359360
ES_00022188	chr16	-	8053	4	FSM	ENSMUSG00000048490.15	ENSMUST00000054178.8	4529	4	-63	-3461	-63	-1	multi-exon	FALSE	canonical	3	43	junction_1	2.86744175568088	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCCTAAGATTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	76170000	76084288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_76091904_76127633_76127753_76149359_76149438_76169759
ES_00022189	chr16	-	8032	4	NIC	ENSMUSG00000048490.15	novel	7868	4	NA	NA	-47	-3	combination_of_known_junctions	FALSE	canonical	3	29	junction_3	8.73053390247253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGTCCTAAGATTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	76169984	76084290	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_76091904_76127633_76127753_76149359_76149435_76169759
ES_00022193	chr16	-	567	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-68	4240	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAATTTTAATAACTGAA	NA	False	NA	NA	False	NA	NA	NA	76200608	76195898	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_76195937_76200079
ES_00022196	chr16	-	6130	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	-3	0	3	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCTCGGTTGATTTTC	3243	False	NA	0	True	AATAAA	-23	NA	78373545	78337222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ES_00022197	chr16	-	2644	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3253	False	NA	NA	False	NA	NA	NA	78373535	78340430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
ES_00022198	chr16	-	1576	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTATTTTGGGTAT	3243	False	NA	NA	False	TATAAA	-12	NA	78373545	78341576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
ES_00022199	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
ES_00022200	chr16	-	5826	5	NIC	ENSMUSG00000022864.15	novel	2644	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGAGCCTCGGTTGATTT	3253	False	NA	-2	True	AATAAA	-21	NA	78373535	78337224	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
ES_00022201	chr16	-	331	1	FSM	ENSMUSG00000116991.2	ENSMUST00000231489.2	1138	1	383	424	383	-424	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTGGCCAAGGAATGG	NA	False	NA	NA	False	AAGAAA	-34	NA	84310693	84310362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84310400_84310700
ES_00022203	chr16	-	1159	11	NNC	ENSMUSG00000022889.8	novel	2294	10	NA	NA	-56	11954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.88635890536	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGTCAGGACATCTTGA	NA	False	NA	NA	False	NA	NA	NA	84532174	84502509	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_84502535_84515167_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
ES_00022204	chr16	-	2309	10	FSM	ENSMUSG00000022889.8	ENSMUST00000116584.2	2294	10	0	-15	0	15	multi-exon	FALSE	canonical	3	703	junction_1	110.666443551761	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATTCCCTAGAGCTGT	NA	False	NA	NA	False	AATAAA	-32	NA	84532630	84514448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
ES_00022205	chr16	-	523	2	FSM	ENSMUSG00000022889.8	ENSMUST00000133901.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	1018	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCATTAAAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	84532118	84531055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84531502_84532041
ES_00022206	chr16	-	530	2	FSM	ENSMUSG00000022890.14	ENSMUST00000144799.2	514	2	0	-16	0	11	multi-exon	FALSE	canonical	3	6096	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTGAGAGGCAGTG	NA	False	NA	14	True	AATAAA	-34	NA	84625701	84624742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84624884_84625312
ES_00022208	chr16	-	758	6	FSM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	0	-16	0	11	multi-exon	FALSE	canonical	3	55	junction_5	3171.52603016277	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTGAGAGGCAGTG	NA	False	NA	14	True	AATAAA	-34	NA	84632391	84624742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696_84631872_84632308
ES_00022209	chr16	-	825	5	FSM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	0	-16	0	11	multi-exon	FALSE	canonical	3	55	junction_4	2792.56360715383	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTGAGAGGCAGTG	NA	False	NA	14	True	AATAAA	-34	NA	84632513	84624742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
ES_00022210	chr16	-	453	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	793	0	0	0	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631720	84624758	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ES_00022211	chr16	-	448	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	545	junction_3	2933.80515144866	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631720	84624758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_84624884_84625312_84625438_84628216_84628391_84631696
ES_00022213	chr16	-	634	5	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	3229.25474180963	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAAATGTCCTTTAAAT	NA	False	NA	-5	True	AATAAA	-15	NA	84632393	84624761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_84624884_84625312_84625438_84628216_84628391_84631696_84631872_84632355
ES_00022215	chr16	-	927	2	FSM	ENSMUSG00000022890.14	ENSMUST00000127651.2	927	2	0	0	0	0	multi-exon	FALSE	canonical	3	5740	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGCATACAATCAGGATT	NA	False	NA	NA	False	NA	NA	NA	84632186	84627958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84628396_84631696
ES_00022219	chr16	-	3389	19	NNC	ENSMUSG00000022892.12	novel	8167	18	NA	NA	0	67514	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.2762608318577	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTCTCTCATTTCAAGA	7382	False	NA	NA	False	NA	NA	NA	84970595	84679058	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_84679093_84751325_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84837138_84837196_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
ES_00022224	chr16	-	7736	30	FSM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	4	3	4	-3	multi-exon	FALSE	canonical	3	140	junction_26	19.3535231547588	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTCTGGCCCATTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	87229496	87173541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
ES_00022227	chr16	-	2394	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGGTGAACATAATTTAT	NA	False	NA	-13	True	AATAAA	-28	NA	87292761	87280213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ES_00022231	chr16	-	7701	29	NIC	ENSMUSG00000002489.17	novel	7255	28	NA	NA	-425	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_25	9.36450092375565	4080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGACTTCCCTGTGCCTT	7421	False	NA	-1	True	AATAAA	-15	NA	89941082	89583998	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397_89664623_89673925_89674099_89681565_89682014_89694492_89695467_89705434_89705604_89752823_89752996_89863408_89863461_89940572
ES_00022232	chr16	-	4403	21	NNC	ENSMUSG00000022983.17	novel	4266	20	NA	NA	9	65489	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	62.9607814436892	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAGAAAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	90081382	89957078	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_89957108_90025837_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022233	chr16	-	4175	20	FSM	ENSMUSG00000022983.17	ENSMUST00000163419.9	4175	20	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	44.050650776067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTAATGTGTGCTATTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90081196	90025838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022234	chr16	-	4356	20	NIC	ENSMUSG00000022983.17	novel	4175	20	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_2	45.9499908819345	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTAATGTGTGCTATTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90081311	90025838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022237	chr16	-	4532	20	NNC	ENSMUSG00000022983.17	novel	429	3	NA	NA	30	3698	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	62.9607009291975	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTACACAAAAAATGTGT	NA	False	NA	NA	False	AATAAA	-3	NA	90081166	90035527	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_90037197_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022243	chr16	-	1418	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	2	10	2	-10	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACTTAACTTGTTGGTG	NA	False	NA	-8	True	AATAAA	-45	NA	90732000	90722706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ES_00022244	chr16	-	1014	6	FSM	ENSMUSG00000022972.11	ENSMUST00000125519.8	1014	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	296.303493060747	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACACTTGACTGTCAGAA	NA	False	NA	-65	True	CATAAA	-19	NA	90731815	90722857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90727881_90728050_90731469
ES_00022245	chr16	-	6776	28	NIC	ENSMUSG00000022973.19	novel	7090	32	NA	NA	-27	4	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	10.2247715554318	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGACTTCTTTACTCAAAA	2369	False	NA	-16	True	AATAAA	-17	NA	90808028	90732984	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807980
ES_00022246	chr16	-	3295	19	FSM	ENSMUSG00000022973.19	ENSMUST00000118246.3	2743	19	12	-564	12	316	multi-exon	FALSE	canonical	3	22	junction_18	12.0836845415116	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAGGGGAGGAAAATAA	2460	False	NA	NA	False	NA	NA	NA	90807937	90756815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807860
ES_00022247	chr16	-	3915	10	ISM	ENSMUSG00000022974.13	ENSMUST00000118522.8	3973	18	15570	0	-1335	0	3prime_fragment	FALSE	canonical	3	305	junction_4	23.8083915074673	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTATCTTGCTGG	NA	False	NA	0	True	ATTAAA	-18	NA	90825861	90810924	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117
ES_00022251	chr16	-	206	1	Intergenic	novelGene_1660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCCTCTAGAGACCCGGT	NA	False	NA	NA	False	NA	NA	NA	91045434	91045228	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_91045200_91045400
ES_00022254	chr16	-	2291	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	51	5	51	-5	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCGACATGGAATCTGAGT	NA	False	NA	-11	True	AATAAA	-19	NA	91394637	91371395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
ES_00022256	chr16	-	3518	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	0	0	0	0	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAGGGCACTTAGAG	NA	False	NA	NA	False	NA	NA	NA	91443840	91418073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ES_00022257	chr16	-	3276	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ES_00022258	chr16	-	1850	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	2	0	-2	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTTTTGATTTTTTTT	NA	False	NA	-4	True	AATAAA	-20	NA	91443813	91430294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ES_00022259	chr16	-	1863	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	0	2	0	-2	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTTTTGATTTTTTTT	NA	False	NA	-4	True	AATAAA	-20	NA	91443823	91430294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ES_00022268	chr16	-	1154	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	9102	False	NA	NA	False	AATAAA	-24	NA	91525589	91491225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ES_00022269	chr16	-	592	8	FSM	ENSMUSG00000058240.15	ENSMUST00000231499.2	592	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_6	518.054248203441	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGGAGGAAACAGGTGG	9206	False	NA	NA	False	NA	NA	NA	91525485	91492200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91514291_91514364_91525445
ES_00022270	chr16	-	783	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	0	-21	0	21	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGACTTTGATCAGTA	9203	False	NA	NA	False	TTTAAA	-23	NA	91525488	91503709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ES_00022273	chr16	-	561	6	FSM	ENSMUSG00000022956.12	ENSMUST00000155452.8	560	6	0	-1	0	-1	multi-exon	FALSE	canonical	2	4	junction_3	2452.38509210931	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGCGTGAGGAGCCTTG	952	False	NA	-7	True	AATAAA	-14	NA	91728434	91722107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91725786_91725898_91727241_91727293_91728407
ES_00022275	chr16	-	2192	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	2	-4	2	2	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTTGGTCGTTTTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	92196963	92188838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
ES_00022276	chr16	-	2323	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	0	-4	0	2	multi-exon	FALSE	canonical	3	250	junction_3	18.4932420089069	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTTGGTCGTTTTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	92263031	92188838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
ES_00022277	chr16	-	747	3	FSM	ENSMUSG00000022948.17	ENSMUST00000233981.2	744	3	0	-3	0	0	multi-exon	FALSE	canonical	3	131	junction_1	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93383519	93380344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_93380573_93382066_93382191_93383124
ES_00022280	chr16	-	3398	12	FSM	ENSMUSG00000022948.17	ENSMUST00000123756.8	2408	12	-990	0	-718	0	multi-exon	FALSE	canonical	2	8	junction_5	44.2920435740658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93401669	93380344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400085_93400453
ES_00022281	chr16	-	1826	12	FSM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	41.4330087596355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400703	93380347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400100_93400453
ES_00022283	chr16	-	216	1	ISM	ENSMUSG00000022948.17	ENSMUST00000152520.2	2617	3	107	5289	107	2123	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTACCCACTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	93385852	93385636	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_93385600_93385900
ES_00022290	chr16	-	1836	1	FSM	ENSMUSG00000114993.2	ENSMUST00000227202.2	1074	1	-48	-714	-48	714	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACACCATGACCAAGGCAAC	NA	False	NA	NA	False	AATAAA	-38	NA	94044254	94042418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94042400_94044300
ES_00022291	chr16	-	220	2	NNC	ENSMUSG00000022940.18	novel	805	4	NA	NA	6577	4547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAGAAAATCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	94159799	94155074	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_94155117_94159621
ES_00022294	chr16	-	757	6	NNC	ENSMUSG00000022940.18	novel	745	5	NA	NA	5	4547	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	179.308672405994	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAGAAAATCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	94171548	94155074	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_94155115_94165310_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ES_00022295	chr16	-	966	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171553	94165305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
ES_00022296	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	117.933243828871	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ES_00022297	chr16	-	747	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	11	0	11	0	multi-exon	FALSE	canonical	2	8	junction_4	183.830084589003	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171863	94165305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
ES_00022298	chr16	-	901	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113914.8	912	5	11	0	11	0	multi-exon	FALSE	canonical	3	19	junction_4	179.103845575688	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171863	94165305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171599
ES_00022299	chr16	-	695	4	FSM	ENSMUSG00000022940.18	ENSMUST00000138514.2	695	4	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_3	26.0298973404728	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAATGTTTTTCCTAG	NA	False	NA	-79	True	NA	NA	NA	94171368	94165564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947
ES_00022300	chr16	-	2547	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGACTGCATATTGT	NA	False	NA	-13	True	AATAAA	-23	NA	94327689	94298641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ES_00022305	chr16	-	10087	41	FSM	ENSMUSG00000022914.18	ENSMUST00000232755.2	9843	41	-244	0	-165	0	multi-exon	TRUE	canonical	3	75	junction_28	104.281922570501	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCCCTCCCCCTCCAGT	NA	False	NA	-14	True	ATTAAA	-17	NA	95883891	95800470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_95804555_95805059_95805909_95806162_95806331_95812909_95813137_95814908_95815076_95817307_95817461_95818780_95818925_95820618_95820661_95820878_95820955_95822415_95822542_95824602_95824724_95824920_95825077_95828544_95828607_95829376_95829489_95831834_95831918_95832726_95832852_95834784_95834893_95834967_95835094_95837061_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860853_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
ES_00022306	chr16	-	3634	5	NIC	ENSMUSG00000022914.18	novel	1193	4	NA	NA	16	-2269	combination_of_known_junctions	FALSE	canonical	3	128	junction_1	36.1144015594887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATGTTTGGAGTGCATA	NA	False	NA	NA	False	TATAAA	-31	NA	95810343	95802739	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_95804555_95805059_95805909_95806162_95806331_95809036_95809415_95809919
ES_00022312	chr16	-	2383	5	FSM	ENSMUSG00000022914.18	ENSMUST00000113827.4	2382	5	0	-1	0	1	multi-exon	FALSE	canonical	3	425	junction_4	11.1214882097676	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTATTCTATAAAATCT	NA	False	NA	46	True	AATAAA	-18	NA	95883726	95867866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
ES_00022313	chr16	-	1230	7	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	17776	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2404.90453148468	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGATGTTGGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	95928929	95904041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_95904068_95922787_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ES_00022314	chr16	-	1229	7	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	17776	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2404.90453148468	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGATGTTGGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	95928929	95904041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_95904069_95922789_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ES_00022315	chr16	-	1321	7	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	-93	17776	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2404.90453148468	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGATGTTGGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	95929022	95904041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_95904068_95922789_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ES_00022316	chr16	-	2143	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	31	0	-31	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGCTAAGATTAAAGATT	NA	False	NA	NA	False	NA	NA	NA	95928929	95921848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ES_00022318	chr16	-	2400	1	FSM	ENSMUSG00000116929.2	ENSMUST00000231393.2	465	1	-2164	229	-2164	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCTGAGGACAGGAGT	NA	False	NA	NA	False	NA	NA	NA	97270312	97267912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97267900_97270300
ES_00022321	chr16	-	3591	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGACTATTATTTCTT	NA	False	NA	2	True	AATAAA	-22	NA	97564987	97543132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
ES_00022322	chr16	-	6258	24	FSM	ENSMUSG00000014039.19	ENSMUST00000095849.10	6346	24	77	11	77	-11	multi-exon	FALSE	canonical	2	5	junction_23	10.6974194368874	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATCTTTGAGAATGGCT	7183	False	NA	42	True	GATAAA	-10	NA	97652350	97592677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618048_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652250
ES_00022325	chr16	-	708	6	FSM	ENSMUSG00000014039.19	ENSMUST00000136529.2	720	6	12	0	12	0	multi-exon	FALSE	canonical	1	1	junction_5	17.9888854574151	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCTGATCGCCAGCTA	6447	False	NA	NA	False	NA	NA	NA	97604633	97595717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604615
ES_00022326	chr16	-	6553	14	FSM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	0	3	0	-3	multi-exon	FALSE	canonical	3	55	junction_10	14.8455559863677	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTTGGTTCCGAGTGCCG	NA	False	NA	-1	True	AATAAA	-24	NA	97723833	97656411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97660777_97669791_97670117_97671352_97671481_97676328_97676443_97677419_97677595_97678307_97678433_97680809_97680875_97682788_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389_97693510_97713805_97713905_97723254
ES_00022327	chr16	-	4009	14	NNC	ENSMUSG00000045975.9	novel	6556	14	NA	NA	27	1051	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_10	21.7981596313452	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGGCTTACAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	97723779	97658898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_97660777_97669791_97670117_97671352_97671481_97676328_97676443_97677419_97677595_97678307_97678433_97680809_97680875_97682788_97682895_97684472_97684597_97687287_97687408_97691213_97691319_97693389_97693510_97713805_97713905_97723254
ES_00022329	chr16	-	6333	2	FSM	ENSMUSG00000046962.17	ENSMUST00000063605.15	5463	2	-88	-782	-81	384	multi-exon	FALSE	canonical	3	32	junction_1	0	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	97763903	97748250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97754294_97763613
ES_00022330	chr16	-	10859	3	FSM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	28	-4877	0	799	multi-exon	FALSE	canonical	3	60	junction_2	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTGGTCATGGTGTCT	NA	False	NA	-2	True	NA	NA	NA	97763793	97743757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97754294_97757957_97758101_97763613
ES_00022334	chr16	+	209	1	Intergenic	novelGene_1506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGAAAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	4368047	4368256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_4368000_4368300
ES_00022335	chr16	+	208	1	Intergenic	novelGene_1508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	868	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTAAAGATAGCT	4062	False	NA	NA	False	NA	NA	NA	4711189	4711397	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_4711200_4711400
ES_00022336	chr16	+	205	1	Intergenic	novelGene_1510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGGGCACATTTAAAATAA	3918	False	NA	NA	False	NA	NA	NA	4766541	4766746	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_4766500_4766700
ES_00022337	chr16	+	203	1	Intergenic	novelGene_1514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAATAATAATAATAACT	2966	False	NA	NA	False	NA	NA	NA	8622770	8622973	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8622800_8623000
ES_00022341	chr16	+	210	1	Intergenic	novelGene_1524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATAGCCAGGCAGGAAC	NA	False	NA	NA	False	NA	NA	NA	12874425	12874635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_12874400_12874600
ES_00022342	chr16	+	218	1	Intergenic	novelGene_1525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGAGCTGAGGATTTGG	NA	False	NA	NA	False	NA	NA	NA	13380550	13380768	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_13380600_13380800
ES_00022343	chr16	+	272	1	Intergenic	novelGene_1528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13583223	13583495	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_13583200_13583500
ES_00022344	chr16	+	203	1	Intergenic	novelGene_1536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGGTTTTTCGAGACAG	NA	False	NA	NA	False	NA	NA	NA	15476971	15477174	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_15477000_15477200
ES_00022345	chr16	+	215	1	Intergenic	novelGene_1538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACCAAATTCAGATCAT	NA	False	NA	NA	False	AAAACA	-40	NA	15866913	15867128	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_15866900_15867100
ES_00022347	chr16	+	207	1	Intergenic	novelGene_1547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCTTTCTTTTTTATGT	4504	False	NA	NA	False	NA	NA	NA	17049628	17049835	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17049600_17049800
ES_00022348	chr16	+	208	1	Intergenic	novelGene_1548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCCTGCTTTTACAGAG	1032	False	NA	NA	False	NA	NA	NA	17201977	17202185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17202000_17202200
ES_00022349	chr16	+	205	1	Intergenic	novelGene_1549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATTTGCTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	17356289	17356494	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17356300_17356500
ES_00022350	chr16	+	244	1	Intergenic	novelGene_1550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCACTCTGGGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	17552891	17553135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17552900_17553100
ES_00022352	chr16	+	217	1	Intergenic	novelGene_1555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATGTTACCCTTTGAAA	NA	False	NA	NA	False	AAAAAG	-3	NA	18082774	18082991	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_18082800_18083000
ES_00022354	chr16	+	217	1	Intergenic	novelGene_1556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAACTTTTGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	18517916	18518133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_18517900_18518100
ES_00022355	chr16	+	217	1	Intergenic	novelGene_1559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCAAACTTTCATGTCAT	NA	False	NA	NA	False	NA	NA	NA	18705260	18705477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_18705300_18705500
ES_00022356	chr16	+	545	1	Intergenic	novelGene_1560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCTTTTCTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	18717317	18717862	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_18717300_18717900
ES_00022357	chr16	+	213	1	Intergenic	novelGene_1561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTGCTGGTTACTCCA	6054	False	NA	NA	False	NA	NA	NA	20158942	20159155	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_20158900_20159200
ES_00022358	chr16	+	212	1	Intergenic	novelGene_1563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCTTGCAATCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	20278755	20278967	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_20278800_20279000
ES_00022359	chr16	+	211	1	Intergenic	novelGene_1565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTCCAAAAAATAAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	20982589	20982800	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_20982600_20982800
ES_00022360	chr16	+	312	1	Intergenic	novelGene_1566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTTTCTGCTTTATGCC	NA	False	NA	NA	False	NA	NA	NA	21191188	21191500	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_21191200_21191500
ES_00022361	chr16	+	238	1	Intergenic	novelGene_1567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGGACTCACTGACACA	NA	False	NA	NA	False	NA	NA	NA	21504504	21504742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_21504500_21504700
ES_00022362	chr16	+	205	1	Intergenic	novelGene_1568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAACACTTTTAAATATTG	NA	False	NA	NA	False	NA	NA	NA	21810853	21811058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_21810900_21811100
ES_00022363	chr16	+	449	1	Intergenic	novelGene_1573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTCCAACTAACGGGGC	NA	False	NA	NA	False	NA	NA	NA	22083442	22083891	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_22083400_22083900
ES_00022365	chr16	+	247	1	Intergenic	novelGene_1576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGTATTAATATATATTA	6965	False	NA	NA	False	NA	NA	NA	23153565	23153812	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_23153600_23153800
ES_00022366	chr16	+	204	1	Intergenic	novelGene_1577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTGTGTGTATGTG	1838	False	NA	NA	False	NA	NA	NA	23159179	23159383	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_23159200_23159400
ES_00022367	chr16	+	208	1	Intergenic	novelGene_1580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGCCTGGGACAACATGG	NA	False	NA	NA	False	NA	NA	NA	24650617	24650825	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_24650600_24650800
ES_00022368	chr16	+	5210	1	Intergenic	novelGene_1581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	625	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCTACATTTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	25336706	25341916	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_25336700_25341900
ES_00022369	chr16	+	211	1	Intergenic	novelGene_1582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTTTGCTTAAAGACT	NA	False	NA	NA	False	NA	NA	NA	29894171	29894382	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_29894200_29894400
ES_00022371	chr16	+	216	1	Intergenic	novelGene_1585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTACCTGTCCGTTGCTC	NA	False	NA	NA	False	NA	NA	NA	30731561	30731777	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_30731600_30731800
ES_00022372	chr16	+	3128	1	Intergenic	novelGene_1587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAGCTATTAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	31199126	31202254	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_31199100_31202300
ES_00022373	chr16	+	221	1	Intergenic	novelGene_1589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTTAAGGAGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	31203788	31204009	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_31203800_31204000
ES_00022374	chr16	+	220	1	Intergenic	novelGene_1590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTTTTCAACTCATCCT	NA	False	NA	NA	False	NA	NA	NA	31813439	31813659	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_31813400_31813700
ES_00022375	chr16	+	280	1	Intergenic	novelGene_1591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGGAACCAGATGGAAGCA	NA	False	NA	NA	False	NA	NA	NA	31828256	31828536	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_31828300_31828500
ES_00022376	chr16	+	211	1	Intergenic	novelGene_1592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGTTTTTCAAATAAA	1973	False	NA	NA	False	NA	NA	NA	31880848	31881059	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_31880800_31881100
ES_00022379	chr16	+	811	1	Intergenic	novelGene_1596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGGTTCAGGGTGCTCC	2168	False	NA	NA	False	AAAAAG	-38	NA	32541283	32542094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_32541300_32542100
ES_00022380	chr16	+	231	1	Intergenic	novelGene_1599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTATCTAGCATTTTTAAA	NA	False	NA	NA	False	ATTAAA	-9	NA	33197243	33197474	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_33197200_33197500
ES_00022381	chr16	+	240	1	Intergenic	novelGene_1602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTCAGGAACTCTTAGC	NA	False	NA	NA	False	NA	NA	NA	33481115	33481355	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_33481100_33481400
ES_00022382	chr16	+	342	1	Intergenic	novelGene_1603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	360	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTATTCTCTTAAAACCA	NA	False	NA	NA	False	NA	NA	NA	33618008	33618350	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_33618000_33618400
ES_00022383	chr16	+	200	1	Intergenic	novelGene_1604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTGGGAGTTTTAAACT	416	False	NA	NA	False	NA	NA	NA	33721260	33721460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_33721300_33721500
ES_00022384	chr16	+	241	1	Intergenic	novelGene_1605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGCTGAGCACAAACAAT	670	False	NA	NA	False	NA	NA	NA	34650622	34650863	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_34650600_34650900
ES_00022385	chr16	+	204	1	Intergenic	novelGene_1609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAAGTGCCTTTTAAATA	5901	False	NA	NA	False	NA	NA	NA	37043783	37043987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_37043800_37044000
ES_00022386	chr16	+	224	1	Intergenic	novelGene_1611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTAATCATGTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	38163348	38163572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_38163300_38163600
ES_00022387	chr16	+	278	1	Intergenic	novelGene_1612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATTCTGAGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	38335056	38335334	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_38335100_38335300
ES_00022388	chr16	+	400	1	Intergenic	novelGene_1614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACAATTATAAAAGCTTT	2816	False	NA	NA	False	NA	NA	NA	38654146	38654546	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_38654100_38654500
ES_00022390	chr16	+	7302	1	Intergenic	novelGene_1617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCCCAACAAGGAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	43584567	43591869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_43584600_43591900
ES_00022391	chr16	+	218	1	Intergenic	novelGene_1618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	767	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTCATGTTTCATATT	NA	False	NA	NA	False	NA	NA	NA	44088546	44088764	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_44088500_44088800
ES_00022393	chr16	+	627	1	Intergenic	novelGene_1623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTAATTCTGGACCCAA	NA	False	NA	NA	False	ATTAAA	-31	NA	46686087	46686714	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_46686100_46686700
ES_00022394	chr16	+	235	1	Intergenic	novelGene_1625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCGGTTTTTGGTTTTTCG	NA	False	NA	NA	False	NA	NA	NA	48127992	48128227	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_48128000_48128200
ES_00022397	chr16	+	228	1	Intergenic	novelGene_1632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGCCATGTAGGAAGACT	NA	False	NA	NA	False	NA	NA	NA	52842782	52843010	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_52842800_52843000
ES_00022398	chr16	+	238	1	Intergenic	novelGene_1633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	53091783	53092021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_53091800_53092000
ES_00022400	chr16	+	228	1	Intergenic	novelGene_1636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCAGAAGAGTGCATCAA	NA	False	NA	NA	False	NA	NA	NA	55770327	55770555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_55770300_55770600
ES_00022401	chr16	+	579	1	Intergenic	novelGene_1639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGGAGGTCAGAGGACAA	NA	False	NA	NA	False	NA	NA	NA	57211474	57212053	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_57211500_57212100
ES_00022402	chr16	+	300	1	Intergenic	novelGene_1640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	374	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTCGGGCGCCAAAATGT	NA	False	NA	NA	False	NA	NA	NA	61415752	61416052	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_61415800_61416100
ES_00022404	chr16	+	212	1	Intergenic	novelGene_1643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	530	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAACCAAAATGAAGTT	NA	False	NA	NA	False	NA	NA	NA	64696008	64696220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_64696000_64696200
ES_00022405	chr16	+	207	1	Intergenic	novelGene_1644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAATGACAGAGAAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	64702539	64702746	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_64702500_64702700
ES_00022406	chr16	+	203	1	Intergenic	novelGene_1645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTCATTCTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	64712851	64713054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_64712900_64713100
ES_00022409	chr16	+	220	1	Intergenic	novelGene_1646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATTTCTTTTTAATTG	NA	False	NA	NA	False	NA	NA	NA	64882950	64883170	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_64883000_64883200
ES_00022410	chr16	+	219	1	Intergenic	novelGene_1647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTGTATTTCTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	66320456	66320675	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_66320500_66320700
ES_00022411	chr16	+	202	1	Intergenic	novelGene_1648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATTGAATTTATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	67482239	67482441	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_67482200_67482400
ES_00022412	chr16	+	374	1	Intergenic	novelGene_1651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGTAATGGTCAGGGT	NA	False	NA	NA	False	NA	NA	NA	79033508	79033882	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_79033500_79033900
ES_00022414	chr16	+	221	1	Intergenic	novelGene_1652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAGCTTTTTAAGAA	8677	False	NA	NA	False	NA	NA	NA	84565835	84566056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_84565800_84566100
ES_00022415	chr16	+	292	1	Intergenic	novelGene_1655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAATTTTTTTCTTATTA	NA	False	NA	NA	False	NA	NA	NA	85582388	85582680	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_85582400_85582700
ES_00022416	chr16	+	208	1	Intergenic	novelGene_1657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGGATTTTCACTGCCA	NA	False	NA	NA	False	NA	NA	NA	87433815	87434023	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_87433800_87434000
ES_00022417	chr16	+	242	1	Intergenic	novelGene_1659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTCAAGTCTTGTTTGG	3870	False	NA	NA	False	NA	NA	NA	90093798	90094040	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_90093800_90094000
ES_00022420	chr16	+	1465	1	Intergenic	novelGene_1662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGGCCTTCTCAGTCGA	2903	False	NA	63	True	NA	NA	NA	91051186	91052651	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_91051200_91052700
ES_00022421	chr16	+	209	1	Intergenic	novelGene_1663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGTCACATTTAAGATGT	NA	False	NA	NA	False	AAAAAG	-4	NA	91347625	91347834	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_91347600_91347800
ES_00022423	chr16	+	211	1	Intergenic	novelGene_1664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATTAATTGCTGAGCAC	NA	False	NA	NA	False	NA	NA	NA	97899459	97899670	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_97899500_97899700
ES_00022424	chr16	+	607	1	Intergenic	novelGene_1501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGGAACTATGGTGAAAAAA	7730	False	NA	3	True	AGTAAA	-3	NA	3549941	3550548	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_3549900_3550500
ES_00022425	chr16	+	876	5	FSM	ENSMUSG00000005982.15	ENSMUST00000176625.8	876	5	0	0	0	0	multi-exon	FALSE	canonical	1	18	junction_1	55.2285026050861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCCATCAGCCTGCCCCA	NA	False	NA	NA	False	NA	NA	NA	3702522	3719912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_3702671_3715114_3715245_3717735_3717833_3718506_3718742_3719646
ES_00022428	chr16	+	1392	6	FSM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	156.624391459313	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCCTCTGCCTAACAGC	NA	False	NA	10	True	AATAAA	-11	NA	4574766	4584109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4575035_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ES_00022429	chr16	+	3175	17	FSM	ENSMUSG00000022517.18	ENSMUST00000229038.2	2250	17	-50	-875	-31	0	multi-exon	FALSE	canonical	3	40	junction_1	129.828191757415	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGTGTGCCTTTGTTC	2893	False	NA	14	True	AATAAA	-15	NA	4704081	4756160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4704338_4725228_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ES_00022430	chr16	+	1004	2	FSM	ENSMUSG00000022516.11	ENSMUST00000230201.2	1004	2	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCATCATTACTGTCC	NA	False	NA	NA	False	NA	NA	NA	4756848	4758409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4757503_4758059
ES_00022431	chr16	+	1339	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	-10	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	274	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	95	False	NA	9	True	AATAAA	-15	NA	4756975	4758880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4757158_4757241_4757578_4758059
ES_00022432	chr16	+	295	3	FSM	ENSMUSG00000096215.9	ENSMUST00000183477.8	247	3	-51	3	-8	0	multi-exon	FALSE	canonical	3	10	junction_1	21.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825171	4826170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4825283_4825835_4825919_4826069
ES_00022436	chr16	+	575	3	FSM	ENSMUSG00000039345.17	ENSMUST00000151233.2	668	3	93	0	93	0	multi-exon	FALSE	canonical	3	190	junction_2	10.5	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGTGGTGGGAAGCAAGG	NA	False	NA	NA	False	NA	NA	NA	8303522	8306707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8303810_8305222_8305326_8306522
ES_00022437	chr16	+	4580	16	FSM	ENSMUSG00000057880.13	ENSMUST00000065987.14	4636	16	54	2	0	-2	multi-exon	FALSE	canonical	2	6	junction_13	3.20138858761146	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCAGAGTGAATGTGGG	NA	False	NA	2	True	ATTAAA	-20	NA	8331346	8439430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8331439_8390699_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149_8420243_8421333_8421397_8421552_8421617_8423375_8423525_8426719_8426858_8428990_8429159_8431846_8431994_8433753_8433866_8436368
ES_00022438	chr16	+	1699	8	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	59.2149319282333	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455603	8475395	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_8455693_8460601_8460714_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ES_00022439	chr16	+	244	2	Antisense	novelGene_ENSMUSG00000068674.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGGGCTGGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	8678684	8742196	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_+_8678865_8742132
ES_00022440	chr16	+	2973	7	Intergenic	novelGene_1518	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	18.5711843695788	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCATTGGCTAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	8970656	9058250	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8970858_9010517_9010673_9032429_9032546_9038336_9038565_9040402_9040532_9040767_9042686_9058024
ES_00022442	chr16	+	1658	6	FSM	ENSMUSG00000039200.17	ENSMUST00000133674.2	2166	6	0	508	0	-508	multi-exon	FALSE	canonical	3	57	junction_2	27.9928562315459	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCACTTGTTGACAGCATG	NA	False	NA	NA	False	ATTAAA	-40	NA	10010810	10031587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516
ES_00022443	chr16	+	5972	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	0	2709	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_10	36.5383360321731	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTCATCAGAGAACATTT	NA	False	NA	NA	False	NA	NA	NA	10010769	10063624	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10058730
ES_00022444	chr16	+	1124	7	NNC	ENSMUSG00000039200.17	novel	1048	9	NA	NA	14	-534	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	46.1136880136714	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCATCAGTCAATGAGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	10010824	10031561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10031171
ES_00022446	chr16	+	902	6	FSM	ENSMUSG00000022503.11	ENSMUST00000156338.2	902	6	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_2	57.819028009817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAAGCCCTCTACTACTG	NA	False	NA	NA	False	NA	NA	NA	10229927	10239301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837
ES_00022447	chr16	+	3751	3	Intergenic	novelGene_1521	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0.5	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCTACTATGTACTGAG	NA	False	NA	NA	False	NA	NA	NA	10286378	10293249	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_10286474_10289437_10289520_10289675
ES_00022448	chr16	+	411	1	FSM	ENSMUSG00000071671.6	ENSMUST00000096279.6	333	1	-41	-37	-41	37	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGCTCCTTTTGAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	10619203	10619614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10619200_10619600
ES_00022449	chr16	+	480	5	FSM	ENSMUSG00000071669.15	ENSMUST00000151478.8	633	5	0	153	0	-153	multi-exon	FALSE	canonical	0	0	junction_3	3.11247489949718	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGCTCCCCACCAGGA	8543	False	NA	NA	False	NA	NA	NA	11263048	11449438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_11263093_11265243_11265373_11328823_11328907_11389562_11389670_11449321
ES_00022450	chr16	+	780	6	FSM	ENSMUSG00000071669.15	ENSMUST00000134941.2	1515	6	72	663	72	-663	multi-exon	FALSE	canonical	0	0	junction_2	4.1182520563948	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTGAATCTTGGGGTT	NA	False	NA	NA	False	NA	NA	NA	11265243	11478697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_11265373_11328823_11328907_11389562_11389670_11449321_11449439_11473999_11474056_11478409
ES_00022452	chr16	+	1399	3	NNC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	11822	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	31.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12962076	12966598	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_12962154_12962264_12962378_12965389
ES_00022453	chr16	+	4600	9	NNC	ENSMUSG00000009569.15	novel	8295	15	NA	NA	34011	-4224	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	10.51115478908	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGCAGTTTTTGCTCAG	NA	False	NA	NA	False	AATAAA	-18	NA	13210295	13228703	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_13212825_13216087_13216351_13217943_13218044_13218516_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480_13227542_13228541
ES_00022454	chr16	+	2340	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	171	3481	9	842	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGCCTGGCTCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	13489892	13517995	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
ES_00022457	chr16	+	3092	4	NIC	ENSMUSG00000022679.14	novel	3089	4	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	83.2519602705479	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	13721050	13767483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_13721145_13762529_13762601_13764392_13764452_13764615
ES_00022460	chr16	+	2128	8	FSM	ENSMUSG00000022678.17	ENSMUST00000132316.8	2105	8	-23	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	103.03773828168	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981138	14010782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ES_00022461	chr16	+	1300	5	FSM	ENSMUSG00000023088.18	ENSMUST00000156089.2	4404	5	2654	450	2654	-450	multi-exon	FALSE	canonical	3	101	junction_3	9.25675429078681	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACACTCTAGTGCTATAC	3961	False	NA	NA	False	NA	NA	NA	14222877	14238157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563
ES_00022463	chr16	+	270	1	FSM	ENSMUSG00000116423.2	ENSMUST00000230636.2	759	1	8	481	8	-481	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAAATCAGGTTACAGAA	NA	False	NA	NA	False	NA	NA	NA	15269875	15270145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_15269900_15270100
ES_00022464	chr16	+	208	1	Intergenic	novelGene_1535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCATTCACAAATGAGAA	NA	False	NA	NA	False	AAAACA	-2	NA	15401552	15401760	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_15401600_15401800
ES_00022465	chr16	+	2439	6	FSM	ENSMUSG00000041957.16	ENSMUST00000161342.8	2931	6	-160	652	-160	-652	multi-exon	FALSE	canonical	3	76	junction_4	18.7232475815495	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATAAATAAATGTACTC	NA	False	NA	NA	False	TTTAAA	-45	NA	16031021	16065701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16031460_16043164_16043278_16043583_16044156_16048504_16048641_16058363_16058572_16064729
ES_00022467	chr16	+	1080	9	FSM	ENSMUSG00000022779.17	ENSMUST00000232080.2	1076	9	-4	0	-4	0	multi-exon	TRUE	canonical	3	287	junction_1	50.5667875190821	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAAAGAAAAAGCCAAGCA	NA	False	NA	NA	False	NA	NA	NA	16688595	16703713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698
ES_00022469	chr16	+	2397	9	FSM	ENSMUSG00000063358.18	ENSMUST00000232611.2	2390	9	-7	0	-7	0	multi-exon	FALSE	canonical	3	119	junction_8	172.340097989412	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGCTCTGTTGCCAA	NA	False	NA	NA	False	AATAAA	-23	NA	16801238	16862613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856299_16861549
ES_00022472	chr16	+	421	1	FSM	ENSMUSG00000116694.2	ENSMUST00000231970.2	354	1	-40	-27	-40	27	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAATTTTGCTGGAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	16955151	16955572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16955200_16955600
ES_00022473	chr16	+	1616	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	-36	0	3	0	multi-exon	FALSE	canonical	3	101	junction_2	5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964803	16966710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_16965011_16965096_16965257_16965461
ES_00022474	chr16	+	217	2	Antisense	novelGene_ENSMUSG00000038965.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1494	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAATTCTTAGCCGGGCG	NA	False	NA	NA	False	NA	NA	NA	17015137	17016443	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_+_17015224_17016312
ES_00022475	chr16	+	6279	3	NNC	ENSMUSG00000050240.17	novel	6354	3	NA	NA	9569	-3	intron_retention	FALSE	canonical	1	1	junction_1	39.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGGAGTCTGTGACTA	NA	False	NA	14	True	ATTAAA	-16	NA	17061096	17081291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_17061184_17072831_17072931_17075198
ES_00022476	chr16	+	6283	3	NNC	ENSMUSG00000050240.17	novel	6354	3	NA	NA	19479	-3	intron_retention	FALSE	canonical	3	13	junction_1	33.5	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGGAGTCTGTGACTA	663	False	NA	14	True	ATTAAA	-16	NA	17071006	17081291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_17071098_17072831_17072931_17075198
ES_00022477	chr16	+	6258	4	NNC	ENSMUSG00000050240.17	novel	6354	3	NA	NA	19479	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	35.052341814302	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGTCTGTGACTATAC	663	False	NA	17	True	ATTAAA	-19	NA	17071006	17081294	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_17071098_17072831_17072931_17075198_17078119_17078146
ES_00022478	chr16	+	652	2	FSM	ENSMUSG00000055692.22	ENSMUST00000232031.2	632	2	-20	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAGCCTCGAGGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	17094172	17094989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17094333_17094497
ES_00022483	chr16	+	1721	7	FSM	ENSMUSG00000055692.22	ENSMUST00000231517.2	1721	7	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_2	55.7875434124859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGGTGTGTGGGGTTT	NA	False	NA	34	True	AATAAA	-19	NA	17094205	17096521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17094333_17094497_17094752_17094825_17095115_17095205_17095457_17095532_17095606_17095714_17095756_17095835
ES_00022485	chr16	+	778	7	FSM	ENSMUSG00000055692.22	ENSMUST00000232167.2	781	7	0	3	0	-3	multi-exon	FALSE	canonical	3	40	junction_6	82.8231046669145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGGTCTCTTCTTTGGGA	NA	False	NA	8	True	AATAAA	-19	NA	17094833	17101090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17100678
ES_00022488	chr16	+	388	5	FSM	ENSMUSG00000022763.19	ENSMUST00000232359.2	642	5	254	0	254	0	multi-exon	FALSE	canonical	2	8	junction_4	1.4790199457749	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTGGAGGAACAATCGGA	NA	False	NA	NA	False	NA	NA	NA	17320359	17321566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17320476_17320576_17320649_17320757_17320822_17321329_17321407_17321507
ES_00022489	chr16	+	434	5	FSM	ENSMUSG00000022763.19	ENSMUST00000232421.2	601	5	2	165	2	-165	multi-exon	FALSE	canonical	2	8	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGAGCAATGGGGTGCGA	NA	False	NA	NA	False	NA	NA	NA	17320757	17323623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17320822_17321329_17321407_17321507_17321626_17322781_17322881_17323547
ES_00022491	chr16	+	4635	20	NNC	ENSMUSG00000005899.15	novel	4623	20	NA	NA	-929	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	63.4617689785248	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCCCTGTTTTGGTTTA	NA	False	NA	19	True	NA	NA	NA	17436288	17462696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_17436322_17437155_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
ES_00022494	chr16	+	349	1	FSM	ENSMUSG00000116936.2	ENSMUST00000231811.2	518	1	111	58	111	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGCCTCCAGAACCTG	NA	False	NA	NA	False	AAAAAG	-11	NA	17552143	17552492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17552100_17552500
ES_00022495	chr16	+	3624	4	FSM	ENSMUSG00000022750.19	ENSMUST00000144116.2	3266	4	-165	-193	-120	193	multi-exon	FALSE	canonical	3	178	junction_1	142.007824510561	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGTGGTGGGTGATAGG	NA	False	NA	NA	False	NA	NA	NA	17577361	17597263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265
ES_00022496	chr16	+	5778	6	ISM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	-179	0	-120	0	intron_retention	FALSE	canonical	0	0	junction_1	195.277853326997	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577361	17611228	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000
ES_00022497	chr16	+	3225	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	164.993350034344	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACAGTCTGAGTTTCTTTT	NA	False	NA	24	True	AATAAA	-33	NA	17577526	17611251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_17578215_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ES_00022498	chr16	+	714	1	FSM	ENSMUSG00000103149.2	ENSMUST00000193194.2	1166	1	29	423	29	-423	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCCCCAGTGCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	17739935	17740649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17739900_17740600
ES_00022499	chr16	+	281	2	Intergenic	novelGene_1551	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTCTTGCAATTTGCA	NA	False	NA	-11	True	NA	NA	NA	17829385	17834831	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17829482_17834646
ES_00022505	chr16	+	1408	11	FSM	ENSMUSG00000075704.18	ENSMUST00000115604.8	1235	11	-21	-152	0	152	multi-exon	FALSE	canonical	3	88	junction_9	21.8229237271269	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTGTAAATTCAAGCTAG	NA	False	NA	NA	False	AATGAA	-20	NA	18245166	18275370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773
ES_00022508	chr16	+	1303	7	NIC	ENSMUSG00000000884.18	novel	1485	8	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	117.185631466585	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGCCTCAAGGTGGGA	NA	False	NA	13	True	AATAAA	-15	NA	18317501	18383288	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_18317602_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ES_00022509	chr16	+	5162	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	-117	-4180	-117	4180	multi-exon	FALSE	canonical	3	20	junction_2	96	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTTCTGGAATGTCGT	NA	False	NA	NA	False	AATAAA	-17	NA	18317533	18324588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18317702_18317795_18317891_18319689
ES_00022511	chr16	+	937	11	FSM	ENSMUSG00000005262.14	ENSMUST00000172013.9	934	11	-3	0	-3	0	multi-exon	FALSE	canonical	3	52	junction_2	128.968562060682	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTAAGTTAATTTCATTG	NA	False	NA	NA	False	AAAAAG	-7	NA	18631047	18646464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385
ES_00022512	chr16	+	2074	14	NIC	ENSMUSG00000022702.17	novel	1911	16	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	39.0372299919421	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	7	True	AATAAA	-16	NA	18696205	18746761	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_18696270_18713523_18713587_18714652_18714797_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
ES_00022513	chr16	+	1911	16	FSM	ENSMUSG00000022702.17	ENSMUST00000153397.8	1911	16	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	39.1149871816702	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACCCATGAAAGCATTTG	NA	False	NA	NA	False	NA	NA	NA	18696019	18753830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18696270_18713523_18713587_18714652_18714678_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767
ES_00022514	chr16	+	3586	1	FSM	ENSMUSG00000105160.2	ENSMUST00000199551.2	1310	1	-2277	1	-2277	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAGAGTGAACTGTGTT	8647	False	NA	NA	False	AATAAA	-24	NA	19059997	19063583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_19060000_19063600
ES_00022515	chr16	+	3602	5	FSM	ENSMUSG00000022686.15	ENSMUST00000152845.8	698	5	0	-2904	0	-312	multi-exon	FALSE	canonical	2	6	junction_3	28.7260770033083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAACCTTGATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	19579148	19587276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_19579228_19579390_19579578_19582900_19583104_19583857_19583965_19584250
ES_00022518	chr16	+	5973	30	NIC	ENSMUSG00000041215.17	novel	5997	30	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	44.8334744143461	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTTTCTGAGCTGGAAG	NA	False	NA	12	True	AATAAA	-18	NA	19959823	20051319	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_19959986_19971658_19971757_19972886_19972980_19975636_19975874_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
ES_00022519	chr16	+	5911	30	NIC	ENSMUSG00000041215.17	novel	6112	31	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	9	junction_17	37.819554046182	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTTCTGAGCTGGAAGC	NA	False	NA	13	True	AATAAA	-19	NA	19959844	20051320	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_19959986_19969191_19969311_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
ES_00022527	chr16	+	3066	21	FSM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	-65	0	-13	0	multi-exon	FALSE	canonical	3	6	junction_1	681.526116520857	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470388	20482164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20470602_20470901_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ES_00022530	chr16	+	5479	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	299	junction_5	317.012396248159	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTATTGCCTCTTTACT	NA	False	NA	14	True	ATTAAA	-14	NA	20491440	20511631	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494509_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022531	chr16	+	5378	32	FSM	ENSMUSG00000045983.17	ENSMUST00000115463.8	5378	32	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_19	401.228978300541	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491495	20511633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503178_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022533	chr16	+	4882	47	NIC	ENSMUSG00000033653.19	novel	4935	47	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_1	25.942753613068	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGCCTGCCAGTCTCTT	NA	False	NA	13	True	AATAAA	-19	NA	21241950	21463422	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_21241976_21253489_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
ES_00022538	chr16	+	204	2	Intergenic	novelGene_1570	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	33	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCAAGAGAGAGTTTG	118	False	NA	NA	False	AAAAAG	-16	NA	22009913	22036004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_22009955_22035841
ES_00022539	chr16	+	1301	1	FSM	ENSMUSG00000043870.10	ENSMUST00000121854.2	529	1	-38	-734	-38	734	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTTCTGCTCCCCTAGA	1507	False	NA	NA	False	AATAAA	-35	NA	22049102	22050403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22049100_22050400
ES_00022540	chr16	+	393	1	FSM	ENSMUSG00000116761.2	ENSMUST00000232582.2	305	1	-372	284	-372	-284	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCCATTTTTGCTGGCTA	3534	False	NA	NA	False	NA	NA	NA	22062545	22062938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22062500_22062900
ES_00022541	chr16	+	511	1	FSM	ENSMUSG00000082241.5	ENSMUST00000120931.2	205	1	-54	-252	-54	252	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGGAGAGGTCTTCGGT	NA	False	NA	NA	False	AATAAA	-36	NA	22113722	22114233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22113700_22114200
ES_00022543	chr16	+	1827	11	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	666.107979234598	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6074	False	NA	NA	False	AATAAA	-1	NA	22926528	22932680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ES_00022545	chr16	+	1170	1	FSM	ENSMUSG00000116733.2	ENSMUST00000231407.2	1130	1	-72	32	-72	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGAAATGTCATTGTTT	7081	False	NA	NA	False	NA	NA	NA	22946470	22947640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_22946500_22947600
ES_00022546	chr16	+	969	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGCGTGCTCGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	24348143	24349112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_24348100_24349100
ES_00022548	chr16	+	3232	30	FSM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	-2	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	99.4304230950511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398195	29470694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ES_00022553	chr16	+	371	1	FSM	ENSMUSG00000116887.2	ENSMUST00000231327.2	371	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGGGTCAATCAGCTG	NA	False	NA	NA	False	NA	NA	NA	29958276	29958647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_29958300_29958600
ES_00022554	chr16	+	4711	26	FSM	ENSMUSG00000022770.18	ENSMUST00000100001.10	4711	26	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_18	97.7523401254415	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTCTTGAATTTTGG	NA	False	NA	26	True	AATAAA	-24	NA	31482752	31692174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31666453_31666488_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00022562	chr16	+	203	1	Intergenic	novelGene_1594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTAAAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	32140290	32140493	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_32140300_32140500
ES_00022564	chr16	+	4540	15	FSM	ENSMUSG00000022791.20	ENSMUST00000115126.9	4540	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_12	45.07408866952	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	False	NA	26	True	AATAAA	-22	NA	32463323	32502311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499723_32499814_32499969_32500098_32501502
ES_00022566	chr16	+	411	3	FSM	ENSMUSG00000022800.15	ENSMUST00000143151.8	445	3	34	0	34	0	multi-exon	FALSE	canonical	1	1	junction_1	303	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGTAGGATGTCATATGA	NA	False	NA	NA	False	NA	NA	NA	32697903	32711779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32698041_32704493_32704623_32711634
ES_00022567	chr16	+	718	3	FSM	ENSMUSG00000022800.15	ENSMUST00000137863.2	718	3	0	0	0	0	multi-exon	FALSE	canonical	3	536	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGAACTTTAAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	32720593	32726008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32721078_32722788_32722916_32725901
ES_00022568	chr16	+	2858	3	FSM	ENSMUSG00000060636.15	ENSMUST00000133785.2	2858	3	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	3305	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32876851	32880545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32876881_32877505_32877549_32877759
ES_00022569	chr16	+	447	5	NNC	ENSMUSG00000060636.15	novel	510	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4092.58353610528	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGTATTTTTTTTTC	NA	False	NA	0	True	AATAAA	-15	NA	32876876	32880525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_32876926_32877505_32877549_32877759_32877912_32879048_32879194_32880467
ES_00022570	chr16	+	919	6	NNC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	126	-65814	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	21.5090678552093	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGGTCTTCCTAGTCC	NA	False	NA	NA	False	NA	NA	NA	33337823	33379158	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33378949
ES_00022571	chr16	+	3052	13	FSM	ENSMUSG00000035506.17	ENSMUST00000059056.15	3166	13	0	114	0	-114	multi-exon	FALSE	canonical	3	33	junction_4	11.0754984838908	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACCTGAAGATAAATTCT	NA	False	NA	NA	False	NA	NA	NA	33338698	33484391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ES_00022572	chr16	+	2878	4	FSM	ENSMUSG00000075254.13	ENSMUST00000128105.2	3656	4	778	0	-195	0	multi-exon	FALSE	canonical	1	1	junction_1	6.68331255192114	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTTGTTCTTTTAT	NA	False	NA	NA	False	AATAGA	-13	NA	33576697	33589204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_33577139_33581127_33581216_33583811_33583987_33587030
ES_00022573	chr16	+	3156	9	FSM	ENSMUSG00000022833.8	ENSMUST00000232489.2	3156	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	18.5050668736971	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTTGTTAGATATGTT	NA	False	NA	NA	False	NA	NA	NA	34511079	34531786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893
ES_00022574	chr16	+	3572	6	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	1	-6	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	561.414428029776	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGGTCTGATCTGGAG	NA	False	NA	NA	False	AATAAA	-14	NA	34842798	34929541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_34843006_34846194_34846313_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ES_00022575	chr16	+	303	1	FSM	ENSMUSG00000116766.2	ENSMUST00000231960.2	1797	1	496	998	496	-998	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTCCCAAAACAAAATGT	NA	False	NA	NA	False	NA	NA	NA	35105619	35105922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35105600_35105900
ES_00022577	chr16	+	5005	9	FSM	ENSMUSG00000022849.6	ENSMUST00000023555.6	4680	9	-230	-95	-198	95	multi-exon	TRUE	canonical	3	10	junction_4	251.189669373563	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCCTGAGAACGACTGC	5206	False	NA	NA	False	AATACA	-38	NA	35590546	35648942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ES_00022580	chr16	+	229	2	Intergenic	novelGene_1607	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTTTTTTTAAAAAGC	3662	False	NA	NA	False	NA	NA	NA	35779455	35811435	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_35779480_35811230
ES_00022581	chr16	+	5089	15	NNC	ENSMUSG00000022905.13	novel	5039	14	NA	NA	-40	19025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	125.862574878723	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGGTGTCCGAGTGGGG	NA	False	NA	NA	False	AAAAAG	-4	NA	35803644	35876526	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090_35857486_35876500
ES_00022582	chr16	+	2863	7	FSM	ENSMUSG00000022900.15	ENSMUST00000089618.10	2850	7	-13	0	-10	0	multi-exon	FALSE	canonical	2	10	junction_5	137.466864694329	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36514329	36547109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36542244_36543042_36545878
ES_00022583	chr16	+	2888	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14126	63	-7434	0	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTCCTGTGTTTGGC	NA	False	NA	6	True	ATTAAA	-18	NA	36528465	36547103	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ES_00022584	chr16	+	1616	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTCAAGTCTGAAAGCAT	NA	False	NA	14	True	NA	NA	NA	36648756	36679933	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ES_00022586	chr16	+	522	4	FSM	ENSMUSG00000034243.18	ENSMUST00000135800.2	509	4	-13	0	-13	0	multi-exon	TRUE	canonical	2	3	junction_2	14.1656862405839	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGCAAAGGCCAAGAT	1436	False	NA	NA	False	AATAAA	-2	NA	36695488	36707960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36695626_36705372_36705551_36707600_36707766_36707918
ES_00022587	chr16	+	11020	22	NNC	ENSMUSG00000034243.18	novel	11001	22	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	28.4464727876578	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGTGTGAGACTATCTG	1452	False	NA	NA	False	AATAAA	-18	NA	36695504	36753444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_36695626_36705372_36705551_36706495_36706591_36707600_36707766_36707918_36708069_36709733_36709857_36711728_36711855_36715192_36715307_36718866_36719270_36720819_36720936_36724914_36725030_36728183_36728258_36732233_36737363_36738270_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ES_00022588	chr16	+	4118	4	NIC	ENSMUSG00000034206.16	novel	1206	5	NA	NA	-30	2949	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	16.3571255285137	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGCTTCAGGAAAACACT	3718	False	NA	NA	False	NA	NA	NA	36832117	36840901	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_36832422_36833468_36833811_36835440_36835572_36837560
ES_00022589	chr16	+	8546	31	NNC	ENSMUSG00000034206.16	novel	8628	31	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	7.86864381933479	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATGTTTTTAATTTTT	3750	False	NA	2	True	AATAAA	-15	NA	36832149	36915779	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560_36837718_36843095_36843205_36848131_36848352_36849704_36849853_36853753_36853901_36855158_36855272_36860844_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ES_00022590	chr16	+	1433	1	ISM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	155369	282	36332	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTGGCTGTATTTATT	NA	False	NA	NA	False	AAAACA	-38	NA	38064731	38066164	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_38064700_38066200
ES_00022592	chr16	+	1805	10	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-147	4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_9	317.855817923244	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTCAACAGGAGGGAGAA	6923	False	NA	-41	True	NA	NA	NA	38378912	38411511	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38399005_38399056_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ES_00022593	chr16	+	1804	9	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	237.230603790911	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGAGGTTGCCCCTTC	7070	False	NA	-16	True	CATAAA	-45	NA	38379059	38411707	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ES_00022594	chr16	+	1600	9	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	290.386703380165	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGAGGTTGCCCCTTC	7070	False	NA	-16	True	CATAAA	-45	NA	38379059	38411707	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408670_38411273
ES_00022595	chr16	+	1654	10	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_4	281.273690360277	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTCAACAGGAGGGAGAA	7070	False	NA	-41	True	NA	NA	NA	38379059	38411511	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38399005_38399056_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ES_00022597	chr16	+	2019	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	285.332673164151	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTATCTTTCATGTGT	NA	False	NA	10	True	ATTAAA	-18	NA	38383173	38411668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ES_00022600	chr16	+	2158	7	FSM	ENSMUSG00000022793.18	ENSMUST00000114712.8	2168	7	10	0	10	0	multi-exon	TRUE	canonical	3	9	junction_1	7.60847480700888	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3924	False	NA	7	True	AGTAAA	-17	NA	38562637	38589210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_38562798_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
ES_00022601	chr16	+	3756	6	FSM	ENSMUSG00000022698.18	ENSMUST00000159514.8	3756	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	773.749675282646	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATCTGTCTGTAACTGT	NA	False	NA	19	True	AATAAA	-19	NA	43960192	43982837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_43960475_43965143_43965282_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ES_00022602	chr16	+	12824	8	NNC	ENSMUSG00000068284.15	novel	12604	8	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	23.7452465705008	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTCTCTCTTCCCGCCC	NA	False	NA	NA	False	AATAAA	-22	NA	43993559	44047826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_43993874_44018602_44018672_44019266_44019385_44020976_44021042_44022100_44022130_44025360_44025444_44033002_44033100_44035777
ES_00022605	chr16	+	946	1	FSM	ENSMUSG00000080715.2	ENSMUST00000120054.2	766	1	-53	-127	-53	127	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATATGAGGGTTAGAGA	4601	False	NA	7	True	ATTAAA	-29	NA	45231889	45232835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_45231900_45232800
ES_00022606	chr16	+	2901	26	NIC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	42	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	338.451806909049	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251641	48451263	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ES_00022611	chr16	+	6522	20	NIC	ENSMUSG00000022637.12	novel	3728	19	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	15.1180030632521	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTGTATGTTATTT	NA	False	NA	NA	False	TATAAA	-15	NA	51851925	52028409	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
ES_00022613	chr16	+	3159	3	FSM	ENSMUSG00000022601.12	ENSMUST00000184618.2	3159	3	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	0.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGCGTTGAGCTTGAC	5155	False	NA	6	True	AATAAA	-27	NA	55825554	55829276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_55826432_55826537_55826714_55827170
ES_00022614	chr16	+	941	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	-61	34	-5	-34	multi-exon	FALSE	canonical	3	14	junction_5	10.507140429251	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGATTTCAATCCACTAAACA	NA	False	NA	NA	False	TTTAAA	-36	NA	55895781	55946749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ES_00022615	chr16	+	966	7	ISM	ENSMUSG00000052917.16	ENSMUST00000202000.2	3218	8	7	2655	7	199	5prime_fragment	FALSE	canonical	3	17	junction_6	8.60232526704263	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACCTAAGTATGTATTTC	NA	False	NA	NA	False	AATAAA	-21	NA	55895849	55959605	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347
ES_00022616	chr16	+	813	5	FSM	ENSMUSG00000052917.16	ENSMUST00000200714.4	1330	5	517	0	43	0	multi-exon	FALSE	canonical	1	1	junction_3	2.73861278752583	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGTGTTGACAAGTCAC	NA	False	NA	NA	False	NA	NA	NA	56000888	56009093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
ES_00022617	chr16	+	214	1	Intergenic	novelGene_1637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAACATACTGT	NA	False	NA	NA	False	NA	NA	NA	56446523	56446737	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_56446500_56446700
ES_00022618	chr16	+	3964	1	FSM	ENSMUSG00000022752.10	ENSMUST00000231298.2	4170	1	205	1	205	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56958065	56962029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_56958100_56962000
ES_00022619	chr16	+	2193	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	-10	-643	5	0	multi-exon	FALSE	canonical	3	12	junction_1	183.824916700648	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548277	58554614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ES_00022624	chr16	+	2277	2	FSM	ENSMUSG00000022883.12	ENSMUST00000231474.2	2277	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACAGATCTTCATTGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	72460071	72540279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_72461083_72539013
ES_00022625	chr16	+	7540	30	NNC	ENSMUSG00000022883.12	novel	7563	29	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	16.5999298022956	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTTGTGTTGATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	72460071	72842986	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_72461083_72539013_72539341_72701517_72701676_72730100_72730222_72730561_72730701_72732546_72732675_72753162_72753172_72756968_72757094_72759041_72759214_72767054_72767261_72768867_72768950_72769095_72769265_72769358_72769526_72774573_72774696_72775447_72775680_72776732_72776855_72780596_72780769_72786486_72786685_72790554_72790582_72792004_72792048_72798806_72798962_72801297_72801634_72803711_72803820_72806499_72806645_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ES_00022626	chr16	+	2912	6	NNC	ENSMUSG00000022883.12	novel	6601	29	NA	NA	17436	3	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.2727787306346	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTTGTGTTGATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	72820744	72842986	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_72820840_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ES_00022627	chr16	+	639	1	Intergenic	novelGene_1650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAGCAAGGATTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	75739054	75739693	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_75739100_75739700
ES_00022628	chr16	+	4577	11	NNC	ENSMUSG00000008976.17	novel	4987	10	NA	NA	359	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	194.659292097757	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	6	True	AATAAA	-15	NA	84632370	84660667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262_84659949_84659999
ES_00022629	chr16	+	846	1	FSM	ENSMUSG00000116972.2	ENSMUST00000231765.2	772	1	2	-76	2	76	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAAGGAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	85441141	85441987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_85441100_85442000
ES_00022631	chr16	+	2178	4	FSM	ENSMUSG00000025612.6	ENSMUST00000156958.2	2210	4	0	32	0	-32	multi-exon	FALSE	canonical	3	4	junction_3	14.0079342596338	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAATAAAGATTAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	87495891	87519776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_87495945_87512218_87512513_87515694_87517039_87519289
ES_00022632	chr16	+	890	2	NNC	ENSMUSG00000053414.9	novel	5393	11	NA	NA	466	-81963	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGGAAATGATAGTGCA	NA	False	NA	NA	False	AATAAA	-10	NA	90183366	90196949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_90183605_90196297
ES_00022633	chr16	+	3028	9	FSM	ENSMUSG00000022971.19	ENSMUST00000023693.14	3047	9	13	6	13	-6	multi-exon	FALSE	canonical	1	3	junction_7	21.683807322516	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACTTTATAGTCTTTT	NA	False	NA	3	True	AATACA	-15	NA	91169683	91202471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
ES_00022634	chr16	+	6684	8	ISM	ENSMUSG00000022967.14	ENSMUST00000117748.8	2771	12	9706	-3078	2321	3078	intron_retention	FALSE	canonical	3	156	junction_1	6.51841974088562	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGCTTTGTTGATTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	91291857	91307407	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
ES_00022635	chr16	+	2455	11	FSM	ENSMUSG00000022961.19	ENSMUST00000122302.8	2449	11	-6	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	119.200209731359	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAACACATATAACTAAGC	NA	False	NA	40	True	AATAAA	-27	NA	91444766	91476109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_91444873_91448517_91448685_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
ES_00022639	chr16	+	1065	6	NNC	ENSMUSG00000022946.11	novel	7319	37	NA	NA	-3347	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.2107414178088	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGTAATTGTCATGTG	NA	False	NA	15	True	AATAAA	-18	NA	93602974	93607471	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_93603070_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ES_00022640	chr16	+	2828	7	FSM	ENSMUSG00000022945.13	ENSMUST00000124313.8	2828	7	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	65.6649745974891	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAAAAAGATAGCATG	4396	False	NA	NA	False	NA	NA	NA	93680818	93691176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001
ES_00022654	chr16	+	5726	6	NNC	ENSMUSG00000080717.11	novel	669	6	NA	NA	4	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	52.295315277757	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGAGTTGCCTTGGT	NA	False	NA	5	True	NA	NA	NA	97798518	97817947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97815779_97816865_97816920_97817041
ES_00022657	chr16	-	5631	4	NNC	ENSMUSG00000039789.8	novel	1842	3	NA	NA	12	20190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.8730042868667	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGATGGTAGGAGCTGGA	4402	False	NA	NA	False	NA	NA	NA	3702413	3655994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3656016_3679373_3684595_3689013_3689141_3702151
ES_00022658	chr16	-	2426	3	FSM	ENSMUSG00000005983.16	ENSMUST00000115859.8	2592	3	166	0	100	0	multi-exon	FALSE	canonical	1	2	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTGGCACAGTGAGGG	NA	False	NA	NA	False	AATAAA	-12	NA	3726387	3722166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3724165_3724704_3725059_3726313
ES_00022659	chr16	-	213	2	NNC	ENSMUSG00000084790.2	novel	565	3	NA	NA	4493	18057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCACACCCAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3850890	3832645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3832675_3850706
ES_00022660	chr16	-	2338	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	25189	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	281.655385485241	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCACACCCAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3895691	3832645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3832673_3857843_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ES_00022661	chr16	-	2343	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	20144	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.655385485241	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGCAAAACAAACAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	3895691	3837690	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3837720_3857840_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ES_00022663	chr16	-	10752	32	NNC	ENSMUSG00000022521.11	novel	10820	31	NA	NA	99	3061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.361160263768	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGAGACAAGGTTTGTG	6111	False	NA	NA	False	NA	NA	NA	4031762	3896130	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3896162_3899191_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944837_3946307_3946551_3955229_3955344_3956608_3956850_3972720_3972898_3997287_3997998_4031002
ES_00022665	chr16	-	6949	6	NNC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	27004	3237	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	10.4192130221049	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGGCTTGTGTCTGTA	6787	False	NA	NA	False	AATAAA	-18	NA	4313923	4294842	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4313829
ES_00022666	chr16	-	3754	6	NIC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	3.76297754444536	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAACGCCTTGGCCTTCTT	NA	False	NA	-4	True	AATAAA	-14	NA	4359680	4298080	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4359543
ES_00022668	chr16	-	498	4	FSM	ENSMUSG00000039637.16	ENSMUST00000150028.2	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_3	9.20144916122817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCAGCTCAGAAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	4446735	4445240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539
ES_00022669	chr16	-	721	5	FSM	ENSMUSG00000039637.16	ENSMUST00000130125.2	728	5	7	0	7	0	multi-exon	FALSE	canonical	3	102	junction_2	6.08276253029822	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGCAGGTAAGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	4479779	4452461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728
ES_00022670	chr16	-	1161	10	FSM	ENSMUSG00000039637.16	ENSMUST00000090480.6	1150	10	0	-11	0	11	multi-exon	FALSE	canonical	1	1	junction_1	36.6029749853448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTGCTTCATGTTCCT	NA	False	NA	NA	False	ACTAAA	-30	NA	4497641	4470415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4470626_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
ES_00022672	chr16	-	812	2	FSM	ENSMUSG00000022515.7	ENSMUST00000229898.2	799	2	0	-13	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	9208	False	NA	-5	True	AATAAA	-13	NA	4760524	4759299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4759662_4760074
ES_00022673	chr16	-	2161	15	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_14	29.5945389336255	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8199	False	NA	-5	True	AATAAA	-13	NA	4782061	4759299	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_4759662_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4781983
ES_00022674	chr16	-	2916	7	ISM	ENSMUSG00000022515.7	ENSMUST00000229765.2	1779	11	7	2873	0	-1360	5prime_fragment	FALSE	canonical	3	74	junction_6	6.51707159867238	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTCAGTTTAGGAGTC	8199	False	NA	NA	False	NA	NA	NA	4782061	4766505	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ES_00022678	chr16	-	1426	12	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	0	33482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.861772307464	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCTAAAGAGATAGCTTA	NA	False	NA	NA	False	NA	NA	NA	4831417	4793111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4793147_4826593_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ES_00022679	chr16	-	388	4	FSM	ENSMUSG00000022540.17	ENSMUST00000202720.2	388	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	225.44228135428	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGTAAAGTTCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	4829605	4827908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4828018_4828330_4828430_4828710_4828761_4829475
ES_00022680	chr16	-	3145	8	FSM	ENSMUSG00000022536.15	ENSMUST00000231132.2	3222	8	0	77	0	-77	multi-exon	FALSE	canonical	3	1044	junction_7	65.3951879899806	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAGATCCAGTTTCCTCT	8116	False	NA	NA	False	NA	NA	NA	4867721	4843793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613
ES_00022681	chr16	-	3856	1	FSM	ENSMUSG00000022536.15	ENSMUST00000229928.2	3990	1	0	134	0	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGCTGCTGGTAGTGA	8116	False	NA	NA	False	TATAAA	-45	NA	4867721	4863865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4863900_4867700
ES_00022682	chr16	-	518	3	FSM	ENSMUSG00000023143.11	ENSMUST00000144490.2	516	3	0	-2	0	2	multi-exon	FALSE	canonical	3	112	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTAGTGAAAGAAGACAGT	NA	False	NA	NA	False	NA	NA	NA	5021341	5017674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_5017916_5019237_5019378_5021204
ES_00022683	chr16	-	4493	31	FSM	ENSMUSG00000022710.18	ENSMUST00000160326.8	4488	31	0	-5	0	0	multi-exon	FALSE	canonical	2	14	junction_28	198.142330998031	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	6532	False	NA	NA	False	AATAAA	-26	NA	8556284	8507458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529996_8530057_8534378_8534484_8556067
ES_00022684	chr16	-	2268	20	ISM	ENSMUSG00000022710.18	ENSMUST00000161046.9	4003	31	0	6531	0	0	5prime_fragment	FALSE	canonical	3	328	junction_19	128.45124752874	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTGTTTTATCTCTC	6610	False	NA	NA	False	NA	NA	NA	8556206	8514540	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8556067
ES_00022686	chr16	-	448	2	Genic_Genomic	ENSMUSG00000068674.4	novel	330	1	NA	NA	-55	10514	multi-exon	FALSE	canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGTAGCTTGCTTCATGT	NA	False	NA	NA	False	AATAAA	-42	NA	8740308	8729409	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_8729437_8739887
ES_00022690	chr16	-	1747	4	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	34168	8	-318	-8	3prime_fragment	FALSE	canonical	3	126	junction_3	20.6074420214316	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	6507	False	NA	-7	True	AATAAA	-20	NA	10960089	10954463	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526
ES_00022691	chr16	-	3546	22	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	14	-8	combination_of_known_splicesites	FALSE	canonical	1	4	junction_13	39.521285059941	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	NA	False	NA	-7	True	AATAAA	-20	NA	10994191	10954463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ES_00022692	chr16	-	3689	23	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	14	-8	combination_of_known_junctions	FALSE	canonical	3	32	junction_4	35.4245794110005	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	NA	False	NA	-7	True	AATAAA	-20	NA	10994191	10954463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963105_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ES_00022694	chr16	-	697	1	FSM	ENSMUSG00000080790.2	ENSMUST00000121348.2	967	1	313	-43	313	43	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAACAACAACAACAAA	2439	False	NA	NA	False	AATAAA	-16	NA	11003650	11002953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_11003000_11003600
ES_00022699	chr16	-	2895	24	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-5	12	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_21	74.3588346795189	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTTTGGTGTGACTGA	NA	False	NA	5	True	ATTAAA	-28	NA	13486007	13355811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483761_13483846_13485397_13485476_13485874
ES_00022701	chr16	-	1005	4	NIC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	22.69116323349	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548602	13532920	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_13533461_13542972_13543080_13545826_13545978_13548395
ES_00022702	chr16	-	340	2	FSM	ENSMUSG00000115907.2	ENSMUST00000229709.2	301	2	-9	-30	-9	30	multi-exon	FALSE	canonical	3	8	junction_1	0	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTTGTCTTGGTTCCATT	NA	False	NA	NA	False	NA	NA	NA	13557077	13555685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13555865_13556916
ES_00022706	chr16	-	258	1	FSM	ENSMUSG00000089818.2	ENSMUST00000162902.2	1973	1	1536	179	1536	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTTCCGAGTGGACAGA	1485	False	NA	2	True	NA	NA	NA	13737727	13737469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13737500_13737700
ES_00022710	chr16	-	3984	18	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	-26	-3	combination_of_known_junctions	FALSE	canonical	3	32	junction_16	367.38773913272	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGTAAGTGAATTCTTTC	NA	False	NA	-18	True	AATAAA	-18	NA	16176849	16130104	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163843_16164010_16176627
ES_00022712	chr16	-	2800	17	NIC	ENSMUSG00000022789.16	novel	3951	18	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	157	junction_15	355.287537601588	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176872	16131246	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16163861_16164010_16176627
ES_00022713	chr16	-	1328	2	Genic_Genomic	ENSMUSG00000098037.2	novel	974	1	NA	NA	-1095	199	multi-exon	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCCTCTTTAAATAATTT	NA	False	NA	NA	False	AATAAA	-21	NA	16185116	16182848	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_16184073_16185012
ES_00022715	chr16	-	8285	17	FSM	ENSMUSG00000022788.17	ENSMUST00000069284.14	2637	17	38	-5686	38	1	multi-exon	TRUE	canonical	2	6	junction_7	4.02919036532155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGCCTTGGCTGTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	16345237	16234779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090_16292248_16292879_16293026_16295287_16295378_16301953_16302462_16308286_16308471_16321960_16322081_16345112
ES_00022716	chr16	-	8423	17	FSM	ENSMUSG00000022788.17	ENSMUST00000162671.8	2714	17	-62	-5647	-1	1	multi-exon	FALSE	canonical	2	6	junction_7	4.09219913371771	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGCCTTGGCTGTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	16417904	16234779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090_16292248_16292879_16293026_16295287_16295378_16301953_16302462_16308286_16308471_16321960_16322081_16417641
ES_00022717	chr16	-	2402	11	FSM	ENSMUSG00000022783.12	ENSMUST00000023468.6	2416	11	18	-4	12	4	multi-exon	FALSE	canonical	1	1	junction_3	2.24722050542442	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGTCCCTTTTGCTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	16647159	16570875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16571742_16580885_16581032_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078_16605263_16610360_16610528_16646883_16646980_16647058
ES_00022718	chr16	-	2191	21	FSM	ENSMUSG00000022771.18	ENSMUST00000164458.10	2190	21	0	-1	0	0	multi-exon	FALSE	canonical	2	8	junction_1	166.780814244325	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929077	16904418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16904980_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ES_00022720	chr16	-	1130	7	NNC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943002	16931261	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
ES_00022723	chr16	-	458	4	FSM	ENSMUSG00000038965.18	ENSMUST00000232514.2	458	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1028.13617775079	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTTACAAAGAAATATGGG	NA	False	NA	NA	False	NA	NA	NA	16994333	16972032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16972147_16977853_16978041_16989626_16989726_16994275
ES_00022724	chr16	-	222	1	Intergenic	novelGene_1546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATCCCACCATTCAGG	NA	False	NA	NA	False	NA	NA	NA	17025334	17025112	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_17025100_17025300
ES_00022727	chr16	-	766	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTCTGAAGGACCAT	7270	False	NA	NA	False	NA	NA	NA	17348916	17346113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17346605_17348641
ES_00022728	chr16	-	3459	19	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	20	junction_18	83.3667525581917	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTTGCGAGTCTGA	NA	False	NA	-2	True	AATAAA	-37	NA	17540764	17469063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17524262_17524348_17540619
ES_00022729	chr16	-	3077	16	NIC	ENSMUSG00000012114.18	novel	3230	17	NA	NA	11	8	combination_of_known_junctions	TRUE	canonical	3	37	junction_9	78.1211594611572	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTTGCGAGTCTGA	NA	False	NA	-2	True	AATAAA	-37	NA	17540800	17469063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ES_00022732	chr16	-	4019	11	NNC	ENSMUSG00000003166.21	novel	4003	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	133.563468059196	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709566	17658218	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_17658448_17658473_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ES_00022734	chr16	-	714	5	FSM	ENSMUSG00000003526.13	ENSMUST00000232384.2	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	5.06828373317832	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGGCTCGCCGTGAGG	NA	False	NA	NA	False	GGGGCT	-41	NA	17898112	17894252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17894282_17895307_17895748_17897050_17897133_17897775_17897856_17898029
ES_00022736	chr16	-	4246	10	NIC	ENSMUSG00000060166.7	novel	4868	11	NA	NA	-13	-710	intron_retention	FALSE	canonical	3	49	junction_4	10.5771708509354	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGAGCCTTTCCTTGGGC	NA	False	NA	0	True	AAAAAG	-10	NA	18053013	18040091	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_18043080_18044322_18044433_18044509_18044631_18044916_18045053_18045218_18045311_18045639_18045743_18045922_18046096_18046177_18046336_18046498_18046621_18052770
ES_00022738	chr16	-	1026	7	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	0	7369	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4639.41539959508	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGGACAGTAGACAGTCT	7219	False	NA	NA	False	NA	NA	NA	18066510	18050278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18050312_18057653_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ES_00022739	chr16	-	1025	7	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	0	7369	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4639.41539959508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGGACAGTAGACAGTCT	7219	False	NA	NA	False	NA	NA	NA	18066510	18050278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18050311_18057653_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ES_00022741	chr16	-	483	4	FSM	ENSMUSG00000013539.15	ENSMUST00000231308.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	113.461692017859	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCACACTACAGAGTTAG	NA	False	NA	NA	False	NA	NA	NA	18123985	18119315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18123862
ES_00022742	chr16	-	723	7	FSM	ENSMUSG00000013539.15	ENSMUST00000232588.2	724	7	1	0	1	0	multi-exon	FALSE	canonical	0	0	junction_6	90.9743553609111	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCAGCTCCTAGATGTC	NA	False	NA	NA	False	NA	NA	NA	18149334	18121583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18149217
ES_00022746	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
ES_00022747	chr16	-	286	1	FSM	ENSMUSG00000084838.4	ENSMUST00000117664.2	286	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGGAGCCTGCTACTT	NA	False	NA	NA	False	NA	NA	NA	19995762	19995476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_19995500_19995800
ES_00022748	chr16	-	1938	4	NNC	ENSMUSG00000041205.9	novel	3280	3	NA	NA	-20	-1330	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	31.3793987620328	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCCCTCAGAGGTGCTA	NA	False	NA	NA	False	NA	NA	NA	20060128	20053382	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_20053625_20053656_20054790_20055336_20055455_20059683
ES_00022750	chr16	-	3416	16	NNC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	1217	0	intron_retention	TRUE	canonical	2	15	junction_15	117.179330752294	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20194175	20150052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20194136
ES_00022751	chr16	-	5872	30	NIC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	-69	0	intron_retention	FALSE	canonical	2	5	junction_29	115.291534515915	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20244805	20150052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244597
ES_00022752	chr16	-	6848	31	NIC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	0	0	intron_retention	FALSE	canonical	2	5	junction_25	127.251059807855	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20245074	20150052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ES_00022754	chr16	-	618	4	FSM	ENSMUSG00000022822.17	ENSMUST00000137985.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	12.1197726417986	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCCATCATTCCTCAGG	NA	False	NA	NA	False	NA	NA	NA	20182950	20163432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20163545_20176118_20176309_20180931_20181022_20182724
ES_00022755	chr16	-	556	4	FSM	ENSMUSG00000022822.17	ENSMUST00000127582.2	705	4	0	149	0	-149	multi-exon	FALSE	canonical	2	9	junction_1	162.514272877458	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATTACACATTGCTGA	NA	False	NA	NA	False	NA	NA	NA	20195392	20187775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20187956_20190869_20190970_20193740_20193885_20195260
ES_00022757	chr16	-	2317	6	NIC	ENSMUSG00000022822.17	novel	1136	7	NA	NA	6	0	intron_retention	FALSE	canonical	3	9	junction_1	77.4689615265365	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245097	20219510	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ES_00022758	chr16	-	1132	7	FSM	ENSMUSG00000033809.16	ENSMUST00000127454.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	157.124154731219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429481	20424221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429292
ES_00022759	chr16	-	3049	23	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	59.9737718155622	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGTGCTGTTGGCTCAT	NA	False	NA	-1	True	AATAAA	-45	NA	20534850	20521715	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ES_00022760	chr16	-	3511	22	FSM	ENSMUSG00000022843.18	ENSMUST00000153075.8	3511	22	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_8	38.9931676089723	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACACCTAATTAGCCAC	NA	False	NA	-33	True	AATAAA	-13	NA	20534914	20521747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ES_00022761	chr16	-	793	4	FSM	ENSMUSG00000022843.18	ENSMUST00000132512.2	794	4	0	1	0	-1	multi-exon	FALSE	canonical	3	208	junction_2	25.4689353265241	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGCAGGGCTCCATTCAG	NA	False	NA	NA	False	NA	NA	NA	20532418	20531061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_20531538_20531629_20531759_20532077_20532210_20532362
ES_00022763	chr16	-	623	2	Genic_Genomic	ENSMUSG00000099764.2	novel	496	1	NA	NA	-42	71387	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCGGAAACTCATGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	20641432	20569507	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_20569537_20640838
ES_00022766	chr16	-	1679	2	NIC	ENSMUSG00000043391.11	novel	1695	3	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCAAATTCAGGGTCTCC	NA	False	NA	-5	True	AATAAA	-22	NA	21513379	21495479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_21496745_21512965
ES_00022767	chr16	-	1188	4	FSM	ENSMUSG00000022856.10	ENSMUST00000232635.2	1184	4	0	-4	0	3	multi-exon	FALSE	canonical	2	6	junction_3	70.6304938866115	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGGTTCTGAATGTGTT	9211	False	NA	1	True	ATTAAA	-19	NA	21766281	21753072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
ES_00022768	chr16	-	2065	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231682.2	2065	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.1727964457259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGTTTGGCTCTTACGT	NA	False	NA	NA	False	NA	NA	NA	21814263	21774333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802591_21803019_21814070
ES_00022769	chr16	-	4952	15	FSM	ENSMUSG00000033581.18	ENSMUST00000129913.8	4952	15	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_2	84.4694426091109	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	2553	False	NA	NA	False	NA	NA	NA	21981769	21877804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_21879636_21880609_21880724_21882331_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
ES_00022770	chr16	-	9122	8	FSM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	-5860	-1893	-1485	-6	multi-exon	FALSE	canonical	3	1235	junction_5	318.920244652138	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATAAGTACATAATGAATA	NA	False	NA	NA	False	AATAAA	-16	NA	22079857	22063304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733
ES_00022771	chr16	-	2404	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	24	756	at_least_one_novel_splicesite	TRUE	canonical	3	309	junction_2	767.684686429121	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAACATGTCTGGGTATT	NA	False	NA	48	True	ATTAAA	-6	NA	22084626	22064441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_22065617_22065939_22066011_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ES_00022774	chr16	-	284	3	NNC	ENSMUSG00000116831.2	novel	1769	4	NA	NA	62	-6219	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.5	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACAGACCCCCCACATG	NA	False	NA	NA	False	NA	NA	NA	22713074	22699951	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_22700136_22705778_22705854_22713049
ES_00022775	chr16	-	2639	2	FSM	ENSMUSG00000090021.3	ENSMUST00000159889.3	2639	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATACACTTAAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	22835788	22832957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22835341_22835532
ES_00022776	chr16	-	2723	4	NNC	ENSMUSG00000022887.10	novel	3786	11	NA	NA	38263	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.44948974278318	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTTGAGAGTTTGTT	NA	False	NA	2	True	AATAAA	-19	NA	23301083	23287110	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_23289481_23293623_23293699_23295016_23295155_23300943
ES_00022777	chr16	-	498	1	NIC	ENSMUSG00000116951.2	novel	691	3	NA	NA	462	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCGTAATGAGATCTGAT	5506	False	NA	NA	False	NA	NA	NA	30688447	30687949	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_30687900_30688400
ES_00022779	chr16	-	880	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	190	0	-20	0	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8690	False	NA	-4	True	AATAAA	-12	NA	31133432	31115939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
ES_00022780	chr16	-	979	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGCTAGCCCAATAAT	8710	False	NA	-38	True	NA	NA	NA	31133412	31115973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
ES_00022781	chr16	-	221	1	Intergenic	novelGene_1588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGATAAGATCCACACATG	NA	False	NA	NA	False	NA	NA	NA	31203522	31203301	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_31203300_31203500
ES_00022782	chr16	-	1530	1	FSM	ENSMUSG00000116739.2	ENSMUST00000232628.2	293	1	-1141	-96	-1141	96	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGGAGGAAATACGGGTT	NA	False	NA	95	True	NA	NA	NA	31807082	31805552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31805600_31807100
ES_00022783	chr16	-	213	2	NNC	ENSMUSG00000022781.9	novel	1234	3	NA	NA	-12186	-194	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAATGAGTGAAAGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	31910346	31852096	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_31852124_31910160
ES_00022784	chr16	-	818	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	141.720287891325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918558	31903233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
ES_00022786	chr16	-	1252	8	FSM	ENSMUSG00000035578.17	ENSMUST00000231235.2	1252	8	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	26.0916751130333	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACCTAGCATCATGTG	7492	False	NA	2	True	ATTAAA	-29	NA	32870240	32836989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221
ES_00022787	chr16	-	1263	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6402	-2	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTCACCTAGCATCATG	6122	False	NA	0	True	ATTAAA	-27	NA	32863838	32836991	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
ES_00022788	chr16	-	201	2	Antisense	novelGene_ENSMUSG00000022808.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	134	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAAATGCTTTCCTTTA	7325	False	NA	NA	False	NA	NA	NA	33116731	33079329	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_33079494_33116694
ES_00022789	chr16	-	719	2	Genic_Genomic	ENSMUSG00000116835.2	novel	615	1	NA	NA	0	39121	multi-exon	FALSE	non_canonical	0	0	junction_1	0	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAACAAACAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	33827827	33788091	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_33788131_33827147
ES_00022794	chr16	-	483	4	NNC	ENSMUSG00000022820.5	novel	971	3	NA	NA	0	43332	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3035.03293044555	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	37474728	37424199	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37424229_37467961_37468082_37469375_37469523_37474541
ES_00022795	chr16	-	479	4	NNC	ENSMUSG00000022820.5	novel	971	3	NA	NA	0	43332	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3035.03293044555	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	37474728	37424199	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37424233_37467969_37468082_37469375_37469523_37474541
ES_00022797	chr16	-	1749	11	FSM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	227	-2	227	2	multi-exon	FALSE	canonical	2	3	junction_9	86.6256313108309	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGTTGTTTTGTTGAA	NA	False	NA	-1	True	AATAAA	-22	NA	38253280	38216476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38237421_38237624_38253165
ES_00022798	chr16	-	708	1	FSM	ENSMUSG00000081651.2	ENSMUST00000122206.2	555	1	25	-178	25	178	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCCAAAAATAAAAAAACAAA	NA	False	NA	NA	False	TATAAA	-19	NA	38506206	38505498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_38505500_38506200
ES_00022799	chr16	-	1373	3	FSM	ENSMUSG00000047261.10	ENSMUST00000102817.5	1420	3	47	0	47	0	multi-exon	FALSE	canonical	2	3	junction_1	1	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGTGTCTCTGTGTTTC	NA	False	NA	2	True	AATAAA	-17	NA	42160967	42068804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_42069478_42112161_42112730_42160835
ES_00022800	chr16	-	3893	9	FSM	ENSMUSG00000022704.17	ENSMUST00000156568.8	3856	9	-33	-4	4	4	multi-exon	FALSE	canonical	2	29	junction_3	36.5299534628776	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCATTGTTTTTTGTA	NA	False	NA	NA	False	AATAAA	-24	NA	43710044	43681765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43683665_43687772_43687891_43689308_43689461_43691141_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ES_00022801	chr16	-	2955	8	ISM	ENSMUSG00000022704.17	ENSMUST00000146343.8	1457	9	45596	-1621	0	-2	3prime_fragment	FALSE	canonical	1	31	junction_3	44.6427999999634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCGCTGTGCATTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	43701576	43681771	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330
ES_00022802	chr16	-	5391	4	FSM	ENSMUSG00000036304.15	ENSMUST00000165648.2	1278	4	0	-4113	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.10433352249844	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGTGGTTGTTGGTGT	NA	False	NA	-1	True	AATAAA	-20	NA	43799413	43785395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270
ES_00022803	chr16	-	5751	5	FSM	ENSMUSG00000036304.15	ENSMUST00000231700.2	5751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	18.5067555233217	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGTGGTTGTTGGTGT	NA	False	NA	-1	True	AATAAA	-20	NA	43800154	43785395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799441_43799821
ES_00022804	chr16	-	1970	3	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	15	-5118	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	8.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTTACCATTTCTGC	NA	False	NA	NA	False	AATAAA	-12	NA	43800139	43794626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_43796109_43799270_43799441_43799821
ES_00022807	chr16	-	3495	17	NNC	ENSMUSG00000022687.13	novel	4451	19	NA	NA	-3	-2315	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2.53645298596288	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGGTTGCCAGGTAACC	NA	False	NA	NA	False	NA	NA	NA	44379263	44307726	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_44307790_44307979_44308216_44308872_44309095_44310502_44310626_44310939_44311046_44311534_44311717_44312055_44312263_44312670_44312782_44313175_44313336_44316614_44316923_44319763_44320037_44320712_44321007_44322008_44322153_44323891_44324039_44340587_44340867_44341521_44341699_44378800
ES_00022808	chr16	-	209	1	Intergenic	novelGene_1619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCTATTATAATAAGCT	NA	False	NA	NA	False	NA	NA	NA	44408030	44407821	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_44407800_44408000
ES_00022809	chr16	-	1438	6	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	43	408	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	40.3187301387333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTATCGGCACCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	44566603	44559096	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565645_44565857_44566361
ES_00022810	chr16	-	758	3	FSM	ENSMUSG00000022661.15	ENSMUST00000171855.8	763	3	5	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	15	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGTAAGAGAGACTGAG	NA	False	NA	NA	False	NA	NA	NA	45229381	45214960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_45215229_45217331_45217659_45229218
ES_00022811	chr16	-	2804	6	NNC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	0	19354	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.810171739185	210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	45563248	45530733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_45530763_45550090_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ES_00022812	chr16	-	2826	6	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	0	-16	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	144.088028649156	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGTAGTGAAAGAACTGT	NA	False	NA	-21	True	NA	NA	NA	45563270	45550103	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ES_00022813	chr16	-	8626	15	ISM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	101297	-113	-100	113	3prime_fragment	FALSE	canonical	2	8	junction_5	3.75594766432426	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAATATCAGTTAATGGT	NA	False	NA	NA	False	AATAAA	-17	NA	50151456	50012093	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391
ES_00022814	chr16	-	996	2	FSM	ENSMUSG00000022641.16	ENSMUST00000142818.2	3089	2	0	2093	0	-673	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACCATAGTGATTTAGAA	9795	False	NA	NA	False	TATAAA	-22	NA	50252672	50248416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_50249345_50252604
ES_00022815	chr16	-	722	2	Intergenic	novelGene_1634	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGTTTCTTTGAGAAA	NA	False	NA	NA	False	NA	NA	NA	54440342	54392952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_54392983_54439650
ES_00022816	chr16	-	1059	4	FSM	ENSMUSG00000022604.19	ENSMUST00000122280.8	1057	4	0	-2	0	2	multi-exon	FALSE	canonical	3	34	junction_3	6.0184900284226	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGGATATTTTGTGCAT	NA	False	NA	NA	False	AATAAA	-22	NA	55755160	55744721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55745434_55748083_55748243_55750828_55750972_55755115
ES_00022817	chr16	-	373	1	FSM	ENSMUSG00000116653.2	ENSMUST00000231662.2	373	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGAAATATATGTACATG	NA	False	NA	NA	False	NA	NA	NA	55761074	55760701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_55760700_55761100
ES_00022819	chr16	-	2349	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	1006.61305375998	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	55850033	55835869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
ES_00022820	chr16	-	7395	4	ISM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	20	1	0	-1	intron_retention	FALSE	canonical	3	1624	junction_1	383.115590332155	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	55850039	55835869	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586
ES_00022821	chr16	-	597	4	NNC	ENSMUSG00000071533.12	novel	792	4	NA	NA	9	-163	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_2	943.307066772121	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACACACGTGCACATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	55850030	55838645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55838891_55842417_55842490_55844586_55844802_55849965
ES_00022823	chr16	-	1028	4	FSM	ENSMUSG00000022751.10	ENSMUST00000231855.2	1220	4	192	0	192	0	multi-exon	FALSE	canonical	3	677	junction_2	48.6780808532501	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGTTTCCATGTGTGGT	NA	False	NA	71	True	ATTAAA	-16	NA	56980940	56977167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429
ES_00022825	chr16	-	2026	4	NNC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	3680	2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	80.5536398239638	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCCTGGAGGATGTCTG	NA	False	NA	-2	True	AATAAA	-24	NA	56994939	56989222	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_56990804_56991985_56992181_56993386_56993523_56994825
ES_00022826	chr16	-	1932	8	NNC	ENSMUSG00000022722.19	novel	1696	8	NA	NA	-25	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	36.9815177225222	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATAACTGACTTATTT	NA	False	NA	NA	False	AATAAA	-9	NA	59459779	59433323	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452823_59459292
ES_00022828	chr16	-	3434	9	NIC	ENSMUSG00000022911.12	novel	3528	10	NA	NA	22	-3	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	12.6830349285965	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCATTTATCTAATTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	62667381	62614050	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_62616072_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
ES_00022829	chr16	-	211	1	Intergenic	novelGene_1641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAATTAAGATTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	64684753	64684542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_64684500_64684800
ES_00022830	chr16	-	209	2	Intergenic	novelGene_1642	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	55	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAATTAAGATTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	64727107	64684542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_64684701_64727056
ES_00022831	chr16	-	710	1	FSM	ENSMUSG00002076385.1	ENSMUST00020183766.1	84	1	-154	-472	-154	472	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATATCTTGATTTAGT	NA	False	NA	NA	False	NA	NA	NA	64738822	64738112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_64738100_64738800
ES_00022832	chr16	-	480	1	FSM	ENSMUSG00000071475.4	ENSMUST00000095940.4	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	83168621	83168141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_83168100_83168600
ES_00022833	chr16	-	754	1	FSM	ENSMUSG00000116991.2	ENSMUST00000231489.2	1138	1	383	1	383	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGAGGTCCAGACCTGA	NA	False	NA	NA	False	NA	NA	NA	84310693	84309939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84309900_84310700
ES_00022834	chr16	-	248	2	Antisense	novelGene_ENSMUSG00000088058.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAACAAAAAAAGCAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	84566056	84490701	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_84490730_84565836
ES_00022837	chr16	-	529	3	FSM	ENSMUSG00000022890.14	ENSMUST00000146103.2	526	3	0	-3	0	0	multi-exon	FALSE	canonical	3	6096	junction_1	588.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84628495	84624758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_84624884_84625312_84625438_84628216
ES_00022841	chr16	-	3465	15	FSM	ENSMUSG00000002489.17	ENSMUST00000089084.12	3495	15	30	0	30	0	multi-exon	FALSE	canonical	3	54	junction_14	7.23793859479623	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGGTTTATAG	NA	False	NA	NA	False	NA	NA	NA	89634733	89584745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646
ES_00022842	chr16	-	4388	21	NNC	ENSMUSG00000022983.17	novel	4266	20	NA	NA	0	65489	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.8147906053134	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAGAAAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	90081313	89957078	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_89957108_90025837_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022845	chr16	-	4367	20	FSM	ENSMUSG00000022983.17	ENSMUST00000232371.2	4367	20	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	57.9041619122408	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081391	90025844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046941_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022846	chr16	-	536	1	Intergenic	novelGene_1658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCACAGTTGCACCACT	NA	False	NA	NA	False	AATAAA	-17	NA	90037339	90036803	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_90036800_90037300
ES_00022847	chr16	-	3208	20	NNC	ENSMUSG00000022983.17	novel	429	3	NA	NA	9	419	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	76.3176043341374	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCACATTTGATTCTCC	NA	False	NA	NA	False	AATAAA	-27	NA	90081382	90038806	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_90038954_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054285_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00022849	chr16	-	221	2	Antisense	novelGene_ENSMUSG00000116600.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATATGGATGAGACAAAT	NA	False	NA	NA	False	NA	NA	NA	90122195	90093813	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_90093990_90122150
ES_00022850	chr16	-	2245	3	FSM	ENSMUSG00000022978.12	ENSMUST00000129171.2	2674	3	430	-1	165	1	multi-exon	FALSE	canonical	3	284	junction_1	13.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGGTTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-26	NA	90523862	90516198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90517639_90518523_90518647_90523180
ES_00022852	chr16	-	937	2	FSM	ENSMUSG00000022973.19	ENSMUST00000156140.2	947	2	5	5	3	-5	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCACATTGTGTTTCGTT	2451	False	NA	NA	False	AATAAA	-7	NA	90807946	90806206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90807058_90807860
ES_00022853	chr16	-	6663	11	ISM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	9356	-878	84	-1	intron_retention	FALSE	canonical	3	97	junction_10	76.0959920100921	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGTTGTATCTTGCTG	NA	False	NA	-1	True	ATTAAA	-17	NA	90831696	90810925	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303
ES_00022855	chr16	-	411	1	FSM	ENSMUSG00000081176.2	ENSMUST00000119544.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCCACTATGAGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	90911487	90911076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_90911100_90911500
ES_00022856	chr16	-	1023	1	FSM	ENSMUSG00000084301.2	ENSMUST00000117514.2	1493	1	160	310	160	-310	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGCTCTGTCCACTGAT	NA	False	NA	NA	False	NA	NA	NA	91311361	91310338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91310300_91311400
ES_00022857	chr16	-	3365	2	FSM	ENSMUSG00000039763.11	ENSMUST00000049244.10	3368	2	3	0	3	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGGTCCATTGATCT	9252	False	NA	NA	False	AATAAA	-16	NA	91415884	91411141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91414268_91415645
ES_00022861	chr16	-	710	7	FSM	ENSMUSG00000022956.12	ENSMUST00000139277.8	710	7	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_6	2358.49822745087	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTCAGCAAGGCCATG	1224	False	NA	-100	True	NA	NA	NA	91728162	91722200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728023
ES_00022862	chr16	-	603	4	FSM	ENSMUSG00000022948.17	ENSMUST00000233453.2	600	4	0	-3	0	0	multi-exon	FALSE	canonical	3	114	junction_3	13.0724477007517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93384876	93380344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706
ES_00022863	chr16	-	2620	3	FSM	ENSMUSG00000022948.17	ENSMUST00000152520.2	2617	3	0	-3	0	0	multi-exon	FALSE	canonical	3	114	junction_2	8.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93385959	93380344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_93380573_93382066_93383206_93384706
ES_00022866	chr16	-	2223	10	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-718	0	combination_of_known_splicesites	TRUE	canonical	3	7	junction_6	45.6786953609289	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93401669	93380344	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93393185_93393224_93396099_93396196_93398525_93398687_93400861
ES_00022875	chr16	-	11557	3	NNC	ENSMUSG00000022914.18	novel	3237	2	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_1	106.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTTGGTCTCTTTAT	NA	False	NA	-3	True	NA	NA	NA	95810213	95793291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_95804478_95809337_95809415_95809919
ES_00022882	chr16	-	5371	24	NIC	ENSMUSG00000014039.19	novel	6194	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_15	8.7757183474732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTATTTTTTAAAGA	6483	False	NA	NA	False	AATAAA	-15	NA	97653050	97593531	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652968
ES_00022886	chr16	-	3072	4	FSM	ENSMUSG00000046962.17	ENSMUST00000052089.9	3072	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	18.4451137763426	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTTGGGATGAATTAAT	NA	False	NA	-1	True	AATAAA	-27	NA	97763809	97750960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97752070_97752669_97754294_97757957_97758101_97763613
ES_00022888	chr16	-	1452	3	FSM	ENSMUSG00000046962.17	ENSMUST00000232187.2	1452	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	12.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763793	97750963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97752070_97754127_97754294_97763613
ES_00022892	chr16	+	204	1	Intergenic	novelGene_1504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAACATCCCTCCATGG	NA	False	NA	NA	False	NA	NA	NA	3835649	3835853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_3835600_3835900
ES_00022893	chr16	+	2178	1	Intergenic	novelGene_1505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAACATCTTCACTCTT	NA	False	NA	NA	False	NA	NA	NA	4102749	4104927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_4102700_4104900
ES_00022894	chr16	+	226	1	Intergenic	novelGene_1512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATTCTATTTTGAAACAT	3208	False	NA	NA	False	NA	NA	NA	8473993	8474219	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8474000_8474200
ES_00022895	chr16	+	225	1	Intergenic	novelGene_1522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATAGGACTTGAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	10975815	10976040	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_10975800_10976000
ES_00022896	chr16	+	250	1	Intergenic	novelGene_1523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTGTAACTTCTTAAAA	5998	False	NA	NA	False	NA	NA	NA	10998342	10998592	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_10998300_10998600
ES_00022898	chr16	+	359	1	Intergenic	novelGene_1526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGACAGTCAGATATTG	NA	False	NA	NA	False	NA	NA	NA	13523833	13524192	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_13523800_13524200
ES_00022899	chr16	+	239	1	Intergenic	novelGene_1530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	303	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCAGCACAGCCAGAACT	NA	False	NA	NA	False	NA	NA	NA	13585512	13585751	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_13585500_13585800
ES_00022900	chr16	+	205	1	Intergenic	novelGene_1533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTGATGTGAATGATG	NA	False	NA	NA	False	NA	NA	NA	14123010	14123215	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_14123000_14123200
ES_00022901	chr16	+	254	1	Intergenic	novelGene_1554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGGTGGATCACATACT	NA	False	NA	NA	False	GATAAA	-9	NA	18078677	18078931	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_18078700_18078900
ES_00022903	chr16	+	472	1	Intergenic	novelGene_1572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22070679	22071151	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_22070700_22071200
ES_00022904	chr16	+	218	1	Intergenic	novelGene_1574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	423	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGGCACATGCCTTTAA	NA	False	NA	NA	False	AAAAAG	-21	NA	22169419	22169637	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_22169400_22169600
ES_00022905	chr16	+	228	1	Intergenic	novelGene_1578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGACACCAACCCACCCA	NA	False	NA	NA	False	NA	NA	NA	23548834	23549062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_23548800_23549100
ES_00022906	chr16	+	217	1	Intergenic	novelGene_1579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGATCAGTGGAGAACATA	NA	False	NA	NA	False	AAGAAA	-18	NA	24587420	24587637	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_24587400_24587600
ES_00022909	chr16	+	210	1	Intergenic	novelGene_1583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACCTTTAGCCAGTAC	NA	False	NA	NA	False	NA	NA	NA	30388841	30389051	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_30388800_30389100
ES_00022910	chr16	+	251	1	Intergenic	novelGene_1584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTCTATCCTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	30704688	30704939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_30704700_30704900
ES_00022911	chr16	+	293	1	Intergenic	novelGene_1595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTTCTGTGACCTTGTG	NA	False	NA	NA	False	NA	NA	NA	32227945	32228238	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_32227900_32228200
ES_00022913	chr16	+	208	1	Intergenic	novelGene_1598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGTCACCAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	32993192	32993400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_32993200_32993400
ES_00022915	chr16	+	201	1	Intergenic	novelGene_1600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGCTATAACTTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	33206233	33206434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_33206200_33206400
ES_00022917	chr16	+	213	1	Intergenic	novelGene_1613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCCATGGCCTATCTTT	NA	False	NA	NA	False	NA	NA	NA	38434793	38435006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_38434800_38435000
ES_00022918	chr16	+	292	1	Intergenic	novelGene_1615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGGATGTCAATTAAT	3919	False	NA	NA	False	NA	NA	NA	38655249	38655541	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_38655200_38655500
ES_00022919	chr16	+	209	1	Intergenic	novelGene_1616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	526	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTACTTTATATTTTCAA	NA	False	NA	NA	False	NA	NA	NA	39497066	39497275	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_39497100_39497300
ES_00022920	chr16	+	390	1	Intergenic	novelGene_1621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTTATCTCTGCCATGG	NA	False	NA	NA	False	AATAAA	-32	NA	44559775	44560165	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_44559800_44560200
ES_00022922	chr16	+	1341	1	Intergenic	novelGene_1629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATCTACATTTAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	50815484	50816825	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_50815500_50816800
ES_00022925	chr16	+	202	1	Intergenic	novelGene_1649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAAGGTTTATTTGTC	NA	False	NA	NA	False	AAAAAG	-1	NA	75281520	75281722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_75281500_75281700
ES_00022926	chr16	+	201	1	Intergenic	novelGene_1653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATTAGAAATGTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	84663249	84663450	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_84663200_84663400
ES_00022927	chr16	+	219	1	Intergenic	novelGene_1654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTAGGTTTTTTTTGTT	1456	False	NA	NA	False	NA	NA	NA	84679057	84679276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_84679100_84679300
ES_00022929	chr16	+	202	1	Intergenic	novelGene_1656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATTTCCTTTAAATACT	NA	False	NA	NA	False	NA	NA	NA	87234454	87234656	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_87234500_87234700
ES_00022930	chr16	+	647	1	Intergenic	novelGene_1661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGTTGCCAATAGTTTTC	1671	False	NA	NA	False	NA	NA	NA	91045229	91045876	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_91045200_91045900
ES_00022935	chr16	+	308	2	Intergenic	novelGene_1499	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTTTTTAATTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	3164324	3170339	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_3164497_3170203
ES_00022938	chr16	+	1550	7	NNC	ENSMUSG00000014303.14	novel	3619	7	NA	NA	20	-1132	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	38.2259365120362	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAATGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	4412596	4430388	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_4412800_4426461_4426683_4428121_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4429865
ES_00022939	chr16	+	3278	17	NIC	ENSMUSG00000022517.18	novel	2250	17	NA	NA	-114	0	combination_of_known_junctions	TRUE	canonical	3	40	junction_1	141.440579396438	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2810	False	NA	13	True	AATAAA	-14	NA	4703998	4756159	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_4704338_4725228_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ES_00022940	chr16	+	2320	18	NIC	ENSMUSG00000022517.18	novel	3138	17	NA	NA	1	-11	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	136.27729719254	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCCAAGGCAGCCAGGCT	2925	False	NA	NA	False	NA	NA	NA	4704113	4755274	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ES_00022941	chr16	+	2846	9	FSM	ENSMUSG00000022543.10	ENSMUST00000090457.7	2831	9	-15	0	-15	0	multi-exon	FALSE	canonical	0	0	junction_3	1.22474487139159	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCGCCTAGGAATCACT	NA	False	NA	NA	False	AATAAA	-16	NA	4782137	4796826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4782255_4783356_4783510_4784375_4784523_4786576_4787050_4789715_4789834_4791901_4792044_4794006_4794154_4794393_4794478_4795361
ES_00022942	chr16	+	429	4	FSM	ENSMUSG00000096215.9	ENSMUST00000178155.9	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	13.8804418757713	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825200	4826173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_4825283_4825607_4825753_4825835_4825934_4826069
ES_00022944	chr16	+	721	6	FSM	ENSMUSG00000022711.17	ENSMUST00000130885.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	21.3953265925061	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAGGGAATCACGAACGA	NA	False	NA	NA	False	AATAAA	-17	NA	8455586	8466979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745
ES_00022945	chr16	+	2324	2	FSM	ENSMUSG00000022711.17	ENSMUST00000143174.2	2370	2	46	0	28	0	multi-exon	FALSE	canonical	3	199	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	8455647	8462880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_8455693_8460601
ES_00022947	chr16	+	3437	6	Intergenic	novelGene_1516	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	16.7164589551735	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTTCAATAGACTCTT	NA	False	NA	NA	False	AATAAA	-23	NA	8970656	9043375	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8970858_9010517_9010673_9032429_9032546_9038336_9038565_9040402_9040532_9040767
ES_00022948	chr16	+	683	2	NNC	ENSMUSG00000116123.2	novel	664	2	NA	NA	-5909	-5	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCATAGGACTTCCCA	NA	False	NA	10	True	AATAAA	-11	NA	8970724	8980193	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_8970862_8979647
ES_00022949	chr16	+	3742	5	Intergenic	novelGene_1520	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	3	junction_1	14.1686273153048	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATATATATGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	9040007	9078665	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_9040024_9040402_9040532_9040767_9040896_9062273_9062421_9075343
ES_00022950	chr16	+	569	3	FSM	ENSMUSG00000039209.13	ENSMUST00000121292.8	550	3	-19	0	-19	0	multi-exon	FALSE	canonical	2	5	junction_2	241	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988070	9992494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_9988189_9988278_9988356_9992120
ES_00022951	chr16	+	3318	9	FSM	ENSMUSG00000022503.11	ENSMUST00000142771.8	3296	9	-22	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	84.8099898302081	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ES_00022953	chr16	+	1121	8	FSM	ENSMUSG00000071669.15	ENSMUST00000115814.4	1125	8	0	4	0	-4	multi-exon	FALSE	canonical	1	1	junction_7	3.06394436993246	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTCTGCTTGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	11140835	11221696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_11140843_11165722_11165785_11167769_11167823_11185540_11185666_11213082_11213264_11217628_11217700_11218664_11218914_11221323
ES_00022954	chr16	+	3089	4	FSM	ENSMUSG00000022679.14	ENSMUST00000128757.8	3089	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	87.8179936004006	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	13721024	13767483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_13721145_13762529_13762601_13764421_13764452_13764615
ES_00022955	chr16	+	202	1	Intergenic	novelGene_1532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCATAGTTTAATACCTTG	NA	False	NA	NA	False	NA	NA	NA	13795852	13796054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_13795900_13796100
ES_00022956	chr16	+	2020	3	FSM	ENSMUSG00000022676.8	ENSMUST00000023356.8	2021	3	1	0	1	0	multi-exon	FALSE	canonical	2	2	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTTACTCATATACTATT	NA	False	NA	NA	False	AATAAA	-17	NA	14523716	14527249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_14523917_14524574_14525124_14525978
ES_00022959	chr16	+	243	1	Intergenic	novelGene_1542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	16867091	16867334	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_16867100_16867300
ES_00022960	chr16	+	268	3	Intergenic	novelGene_1543	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTTACAGATGGTAGTG	NA	False	NA	NA	False	NA	NA	NA	16881920	16898245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_16881935_16894102_16894114_16898002
ES_00022962	chr16	+	1002	4	FSM	ENSMUSG00000041617.11	ENSMUST00000182822.8	1040	4	38	0	33	0	multi-exon	FALSE	canonical	2	5	junction_2	1.88561808316413	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCCTGGGCTGGGCTGG	NA	False	NA	NA	False	AAAACA	-19	NA	17464371	17467279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17466658
ES_00022963	chr16	+	648	4	FSM	ENSMUSG00000041617.11	ENSMUST00000182671.8	648	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.2659863237109	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAAGCTTCCTTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	17464476	17468602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17468230
ES_00022964	chr16	+	216	1	FSM	ENSMUSG00000116936.2	ENSMUST00000231811.2	518	1	244	58	244	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGCCTCCAGAACCTG	NA	False	NA	NA	False	AAAAAG	-11	NA	17552276	17552492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17552300_17552500
ES_00022966	chr16	+	4662	1	Intergenic	novelGene_1553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTTTCTTGTGGGTGA	NA	False	NA	13	True	NA	NA	NA	17830193	17834855	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17830200_17834900
ES_00022967	chr16	+	1218	6	FSM	ENSMUSG00000003531.16	ENSMUST00000143343.8	1280	6	62	0	30	0	multi-exon	FALSE	canonical	0	0	junction_1	203.239366265495	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGATCCTTTCCTAGTGAC	NA	False	NA	27	True	AATAAA	-33	NA	17870785	17889224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17870986_17882916_17883049_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ES_00022968	chr16	+	1420	4	FSM	ENSMUSG00000003531.16	ENSMUST00000155387.8	1415	4	-5	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	154.861228201251	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGCAGAGGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	17884306	17889496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_17884721_17887287_17887389_17887945_17888096_17888741
ES_00022970	chr16	+	1933	12	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCCTCTAGTTTGATAT	NA	False	NA	0	True	AATAAA	-10	NA	18631070	18654001	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ES_00022971	chr16	+	1279	3	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	12	0	intron_retention	FALSE	non_canonical	0	0	junction_2	88.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655342	18658910	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_18655624_18657839_18658618_18658690
ES_00022972	chr16	+	395	1	Intergenic	novelGene_1557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCCATATCACCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	18667106	18667501	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_18667100_18667500
ES_00022973	chr16	+	2044	13	FSM	ENSMUSG00000022702.17	ENSMUST00000120532.9	2044	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	35.0186458269813	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	7	True	AATAAA	-16	NA	18695786	18746761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_18695965_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
ES_00022975	chr16	+	4135	26	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	36.3301747862572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGCCTTCCCTGCCTT	NA	False	NA	7	True	AATAAA	-23	NA	18696042	18789059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_18696270_18713523_18713587_18714652_18714797_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ES_00022976	chr16	+	4892	6	FSM	ENSMUSG00000022686.15	ENSMUST00000164397.8	4872	6	-20	0	6	0	multi-exon	FALSE	canonical	2	6	junction_3	26.2343286554087	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATCTGCGTTACTTGGG	NA	False	NA	NA	False	AATAAA	-13	NA	19578963	19591503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_19579228_19579390_19579578_19582900_19583104_19583857_19583965_19584250_19584372_19587493
ES_00022978	chr16	+	7859	10	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	5	0	intron_retention	TRUE	non_canonical	0	0	junction_8	29.3787527153743	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916317	19947971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655_19945162_19945251_19946738_19946934
ES_00022979	chr16	+	7320	11	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	2	junction_7	39.4675816335382	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916317	19947971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_19916422_19920741_19920805_19925412_19925519_19925606_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938905_19939049_19941655_19942566_19943060_19946738_19946934
ES_00022980	chr16	+	7796	9	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	5	0	intron_retention	FALSE	non_canonical	0	0	junction_7	34.6480067969284	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916317	19947971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655_19945162_19945251_19946738_19946934
ES_00022981	chr16	+	7708	10	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	39.1003773149677	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916317	19947971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_19916422_19925412_19925519_19925606_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655_19945162_19945251_19946738_19946934
ES_00022983	chr16	+	821	5	FSM	ENSMUSG00000003235.14	ENSMUST00000148714.2	821	5	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_4	1341.38044566037	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20325147	20328073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327687
ES_00022986	chr16	+	1225	2	FSM	ENSMUSG00000046613.20	ENSMUST00000046188.3	2518	2	1291	2	219	1	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGATGAGTTGTTCGTT	1558	False	NA	NA	False	AATAAA	-15	NA	20422815	20424125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20423202_20423286
ES_00022987	chr16	+	5439	32	NIC	ENSMUSG00000045983.17	novel	5394	32	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	236	junction_1	347.040851712798	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTATTGCCTCTTTACT	NA	False	NA	14	True	ATTAAA	-14	NA	20491456	20511631	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022988	chr16	+	5374	32	NIC	ENSMUSG00000045983.17	novel	5507	32	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_2	413.805033341967	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491456	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20491627_20492348_20492406_20492977_20493065_20494093_20494271_20494509_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022990	chr16	+	5441	33	NNC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	346.60719250823	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTATTGCCTCTTTACT	NA	False	NA	14	True	ATTAAA	-14	NA	20491504	20511631	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492981_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022991	chr16	+	5377	32	NNC	ENSMUSG00000045983.17	novel	5394	32	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	403.619864225098	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491513	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502171_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022993	chr16	+	5226	31	NIC	ENSMUSG00000045983.17	novel	5394	32	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	349.844282820546	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491574	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20491627_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022994	chr16	+	5368	33	NNC	ENSMUSG00000045983.17	novel	5507	32	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	373.795094217323	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491582	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502171_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022995	chr16	+	5713	31	NIC	ENSMUSG00000045983.17	novel	5507	32	NA	NA	-178	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	345.849692785753	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491866	20511633	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_20492406_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ES_00022996	chr16	+	662	5	FSM	ENSMUSG00000021018.9	ENSMUST00000231392.2	678	5	16	0	16	0	multi-exon	FALSE	canonical	0	0	junction_1	331.022185812371	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTTCTCCATTGTCAT	1361	False	NA	12	True	ATTAAA	-13	NA	20536871	20541014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_20536917_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ES_00022999	chr16	+	2671	11	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-4	intron_retention	FALSE	canonical	3	441	junction_1	579.353916013347	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGTATATTCACTTT	6074	False	NA	NA	False	AGTAAA	-43	NA	22926528	22932676	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ES_00023002	chr16	+	4524	11	FSM	ENSMUSG00000022514.15	ENSMUST00000023156.13	4520	11	-4	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	6.68505796534331	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTTGTGCATGTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	26400502	26536494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837_26519987_26529230_26529381_26530866_26531011_26533450
ES_00023004	chr16	+	3200	7	FSM	ENSMUSG00000046598.16	ENSMUST00000089759.9	1711	7	-84	-1405	-84	1	multi-exon	FALSE	canonical	2	4	junction_1	185.763888369678	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCAGAGTGGCTTGGAATT	5425	False	NA	18	True	AATAAA	-18	NA	31241013	31277720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_31241331_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ES_00023005	chr16	+	4675	26	NIC	ENSMUSG00000022770.18	novel	3248	27	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_19	102.405077999091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATATGTTAAATGTGTC	NA	False	NA	15	True	AATAAA	-13	NA	31482762	31692163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31673485_31673507_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ES_00023006	chr16	+	200	1	Genic_Genomic	ENSMUSG00000022770.18	novel	NA	NA	NA	NA	-1796	21	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATCATTACAAATTCC	6486	False	NA	NA	False	AAGAAA	-3	NA	31670672	31670872	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_+_31670700_31670900
ES_00023007	chr16	+	4103	16	FSM	ENSMUSG00000022780.6	ENSMUST00000023464.6	4133	16	30	0	30	0	multi-exon	FALSE	canonical	1	2	junction_8	1.29957257930786	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTGCCACCTGACTCAA	1755	False	NA	NA	False	AATAAA	-45	NA	31697657	31717838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_31697794_31698940_31699096_31700685_31700786_31702578_31702762_31703761_31703919_31705017_31705086_31706229_31706418_31706927_31707109_31707695_31707848_31709533_31709631_31710384_31710580_31711303_31711461_31711557_31711626_31713508_31713697_31715246_31715446_31715959
ES_00023008	chr16	+	880	1	FSM	ENSMUSG00000083890.2	ENSMUST00000120250.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAGGAGGCAACATGTGC	3342	False	NA	NA	False	NA	NA	NA	31743806	31744686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_31743800_31744700
ES_00023009	chr16	+	210	2	Intergenic	novelGene_1593	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCATGAACATGACTTGA	NA	False	NA	NA	False	NA	NA	NA	31977219	32026082	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_31977334_32025986
ES_00023010	chr16	+	309	1	FSM	ENSMUSG00000103847.2	ENSMUST00000194813.2	519	1	42	168	42	-168	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATGGTTGGAGTGAA	NA	False	NA	NA	False	GATAAA	-40	NA	32227395	32227704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32227400_32227700
ES_00023011	chr16	+	4049	15	NIC	ENSMUSG00000022791.20	novel	1075	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	7	junction_1	44.5274508314929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	4326	False	NA	26	True	AATAAA	-22	NA	32475839	32502311	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_32475946_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ES_00023013	chr16	+	2272	1	FSM	ENSMUSG00000091997.2	ENSMUST00000163830.2	1272	1	108	-1108	108	1108	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGATCTGGTGTCTCCTGT	7400	False	NA	NA	False	AATAAA	-25	NA	32743695	32745967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_32743700_32746000
ES_00023014	chr16	+	214	2	Antisense	novelGene_ENSMUSG00000035578.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	335	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACCATAGGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	32848759	32864754	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_+_32848811_32864591
ES_00023015	chr16	+	427	5	NNC	ENSMUSG00000060636.15	novel	491	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4009.42548877018	795	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGTATTTTTTTTTC	NA	False	NA	0	True	AATAAA	-15	NA	32876851	32880525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_32876881_32877505_32877549_32877759_32877912_32879048_32879194_32880467
ES_00023018	chr16	+	2526	13	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_5	14.3611648397877	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337713	33483778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ES_00023019	chr16	+	2364	12	FSM	ENSMUSG00000035506.17	ENSMUST00000119173.8	2382	12	18	0	18	0	multi-exon	FALSE	canonical	1	4	junction_1	22.1187628365939	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33338923	33483778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_33339044_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ES_00023020	chr16	+	396	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	-4	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	434	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892449	35912481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_35892508_35910270_35910331_35912203
ES_00023022	chr16	+	2816	14	FSM	ENSMUSG00000022837.15	ENSMUST00000114819.8	2797	14	-21	2	1	-2	multi-exon	FALSE	canonical	3	51	junction_1	68.0198369951889	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCATGTTATTTCAATG	NA	False	NA	50	True	AATAAA	-17	NA	36648747	36693081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812
ES_00023023	chr16	+	11118	23	NNC	ENSMUSG00000034243.18	novel	11001	22	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	26.4968421633239	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGAGACTATCTGTTG	1480	False	NA	NA	False	AATAAA	-21	NA	36695532	36753447	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_36695626_36705372_36705551_36706495_36706591_36707600_36707766_36707918_36708069_36709733_36709857_36711728_36711855_36713677_36713801_36715192_36715307_36718866_36719270_36720819_36720936_36724914_36725030_36728183_36728258_36732233_36737363_36738270_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ES_00023024	chr16	+	1080	5	ISM	ENSMUSG00000034206.16	ENSMUST00000183112.8	7386	26	-6	77401	-6	1	5prime_fragment	FALSE	canonical	3	18	junction_3	8.6421930087218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3742	False	NA	NA	False	ATTAAA	-17	NA	36832141	36837953	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560
ES_00023028	chr16	+	4995	4	FSM	ENSMUSG00000022698.18	ENSMUST00000063542.8	2136	4	-529	-2330	-467	138	multi-exon	FALSE	canonical	3	8	junction_2	621.795965106097	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAAACTCCAGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	43959725	43983867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_43960475_43976772_43976910_43978242_43978310_43979825
ES_00023030	chr16	+	271	1	Intergenic	novelGene_1626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTAAAAAAAATTGT	NA	False	NA	NA	False	NA	NA	NA	48150120	48150391	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_48150100_48150400
ES_00023031	chr16	+	3536	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	53	770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	367.021324130988	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGGTATGTTTTATCAT	NA	False	NA	NA	False	ACTAAA	-6	NA	48251652	48452033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48251766_48257637_48257692_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ES_00023032	chr16	+	3473	18	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17644	358	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	411.226993445723	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGGCAGAGGCAGAGGC	7165	False	NA	NA	False	NA	NA	NA	48317638	48451621	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48318727_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ES_00023033	chr16	+	1353	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16989	628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	472.316746871207	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGTATAATGTGCCT	684	False	NA	17	True	ATTAAA	-21	NA	48432018	48451891	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ES_00023034	chr16	+	1463	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	-147	0	132	0	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49675860	49731444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
ES_00023035	chr16	+	1141	10	NIC	ENSMUSG00000055447.20	novel	1358	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	22.7107414625278	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676149	49731444	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
ES_00023037	chr16	+	4756	23	FSM	ENSMUSG00000052917.16	ENSMUST00000089360.10	4802	23	32	14	17	13	multi-exon	FALSE	canonical	1	1	junction_21	11.3403397561592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTCTTAAATATGAAGG	NA	False	NA	NA	False	ATTAAA	-28	NA	55895803	56010360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55959347_55959464_55971636_55971822_55973737_55974072_55975586_55975739_55978830_55978978_55982737_55982772_55986195_55986376_55990057_55990321_55992112_55992247_55993519_55993637_55996159_55996283_55999319_55999413_55999860_55999986_56000888_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
ES_00023041	chr16	+	678	3	FSM	ENSMUSG00000022865.15	ENSMUST00000232189.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCATATTGTAATTGGT	NA	False	NA	NA	False	TATAAA	-10	NA	78122094	78130605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_78122212_78125841_78126047_78130249
ES_00023054	chr16	+	1917	14	FSM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	-23	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	247.655157271309	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAATAAACACTCATGAA	4366	False	NA	-17	True	NA	NA	NA	93680788	93702965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_+_93680864_93681320_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ES_00023059	chr16	+	4077	5	NNC	ENSMUSG00000080717.11	novel	669	6	NA	NA	0	-1306	at_least_one_novel_splicesite	TRUE	canonical	3	35	junction_4	37.4466286867056	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTAGTTTCCATGTGTC	NA	False	NA	8	True	NA	NA	NA	97798514	97815844	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97812329_97813087
ES_00023060	chr16	-	473	1	ISM	ENSMUSG00000049871.15	ENSMUST00000180200.8	3842	15	30758	308	18420	295	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAGGCAGGAGGATCAGT	NA	False	NA	NA	False	NA	NA	NA	3763651	3763178	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_3763200_3763700
ES_00023061	chr16	-	1027	12	FSM	ENSMUSG00000049871.15	ENSMUST00000163478.3	2719	12	1667	25	1667	-25	multi-exon	FALSE	canonical	1	1	junction_5	2.7393671224217	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTATTCCTGGTGACGT	NA	False	NA	NA	False	NA	NA	NA	3780404	3766767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3766852_3767233_3767318_3770250_3770335_3770726_3770811_3771291_3771392_3771795_3771880_3772419_3772504_3773008_3773093_3775132_3775217_3776793_3776878_3777254_3777339_3780317
ES_00023062	chr16	-	546	4	NNC	ENSMUSG00000084790.2	novel	565	3	NA	NA	912	18060	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.05480466765633	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACACCCAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	3854471	3832642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_3832674_3850705_3850917_3852364_3852540_3854342
ES_00023063	chr16	-	1473	1	FSM	ENSMUSG00000022521.11	ENSMUST00000191387.2	3134	1	1338	323	190	-323	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTAGGATTTTGTGTGTG	2393	False	NA	NA	False	NA	NA	NA	3906269	3904796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_3904800_3906300
ES_00023064	chr16	-	3834	6	NNC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	26964	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	11.1821285987955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATCTCTCTTCAACGCC	6747	False	NA	-15	True	AATAAA	-3	NA	4313963	4298091	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4313735
ES_00023065	chr16	-	624	6	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	0	36912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	493.230007197453	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	4442852	4397415	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4397450_4434333_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ES_00023066	chr16	-	3913	30	NNC	ENSMUSG00000039637.16	novel	4296	28	NA	NA	-3960	493	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_29	29.1979997034475	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTGCTGCTCCAC	7992	False	NA	-1	True	ATTAAA	-16	NA	4501601	4444747	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415_4497856_4501339_4501416_4501523
ES_00023069	chr16	-	246	1	Intergenic	novelGene_1509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTTTAGGAGTCTATAGA	2987	False	NA	NA	False	NA	NA	NA	4766745	4766499	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_4766500_4766700
ES_00023070	chr16	-	5022	22	FSM	ENSMUSG00000039457.5	ENSMUST00000035672.5	6217	22	-37	1232	-37	-1232	multi-exon	FALSE	canonical	2	2	junction_13	2.19564607302829	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGGGCTCTGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	4950322	4905386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_4907693_4909708_4909802_4910228_4910346_4911059_4911144_4912272_4912424_4914489_4914684_4915508_4915648_4915738_4915918_4917846_4918005_4918194_4918293_4919237_4919390_4920157_4920305_4920419_4920543_4922314_4922411_4922537_4922646_4922727_4922890_4923786_4923829_4923914_4924035_4924625_4924747_4925320_4925476_4930855_4930956_4950145
ES_00023071	chr16	-	1050	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	1	-314	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGATTTCTGAGTTCAA	NA	False	NA	NA	False	NA	NA	NA	5073792	5063056	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ES_00023072	chr16	-	1225	12	FSM	ENSMUSG00000022710.18	ENSMUST00000172505.2	1225	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	246.223274339463	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACAGTTGATCCTGAGCT	NA	False	NA	NA	False	AATAGA	-45	NA	8524593	8515514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_8515560_8515756_8515859_8516315_8516451_8516583_8516674_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462
ES_00023074	chr16	-	656	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	0	-42769	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	174.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTCCTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	8610172	8566592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_8566919_8574679_8574937_8610099
ES_00023075	chr16	-	2332	1	Genic_Genomic	ENSMUSG00000116348.2	novel	NA	NA	NA	NA	961	325	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCAAAGCAGAATAAGGGG	NA	False	NA	NA	False	NA	NA	NA	8924673	8922341	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_8922300_8924700
ES_00023076	chr16	-	3316	7	FSM	ENSMUSG00000050908.13	ENSMUST00000051118.7	3315	7	6	-7	6	7	multi-exon	FALSE	canonical	2	5	junction_6	2.91070819942883	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCATAGTTTTCTTTATC	NA	False	NA	NA	False	AATAAA	-24	NA	10265220	10238413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10246522_10246668_10264793
ES_00023077	chr16	-	403	2	FSM	ENSMUSG00000043050.9	ENSMUST00000051297.9	554	2	152	-1	152	1	multi-exon	FALSE	canonical	2	2	junction_1	0	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGAGTCAGCAGCTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	10606372	10605798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_10605958_10606128
ES_00023078	chr16	-	2522	11	NIC	ENSMUSG00000022498.17	novel	3095	12	NA	NA	3	57	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	28.318898283655	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGCTGCGCCGGCAG	8537	False	NA	NA	False	NA	NA	NA	10952511	10893231	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ES_00023079	chr16	-	3632	21	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	13	-8	combination_of_known_splicesites	FALSE	canonical	2	5	junction_16	40.3591377509481	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	NA	False	NA	-7	True	AATAAA	-20	NA	10994192	10954463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ES_00023082	chr16	-	220	1	Intergenic	novelGene_1527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCCTCCTTTTGTGGTAA	NA	False	NA	NA	False	NA	NA	NA	13557978	13557758	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_13557800_13558000
ES_00023083	chr16	-	326	1	FSM	ENSMUSG00000089818.2	ENSMUST00000162902.2	1973	1	1464	183	1464	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCTCCTTCCGAGTGGA	1413	False	NA	-2	True	NA	NA	NA	13737799	13737473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_13737500_13737800
ES_00023084	chr16	-	8436	26	NIC	ENSMUSG00000060657.9	novel	7751	27	NA	NA	30	6	intron_retention	FALSE	canonical	2	10	junction_23	10.0995049383621	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTTTTGTTTGTGG	9846	False	NA	0	True	AATAAA	-22	NA	13977101	13927030	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958237_13959506_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13970577_13971695_13971896_13977007
ES_00023085	chr16	-	281	2	Intergenic	novelGene_1534	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCATGTTGTCAGATG	NA	False	NA	NA	False	ATTAAA	-12	NA	15271548	15271183	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_15271367_15271450
ES_00023086	chr16	-	2469	1	FSM	ENSMUSG00000022674.16	ENSMUST00000229244.2	2469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAGAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	15412354	15409885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_15409900_15412400
ES_00023087	chr16	-	3413	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	0	4067	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	379.752833885081	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTTCTGAGTACTTTAA	NA	False	NA	NA	False	NA	NA	NA	15455264	15437693	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_15437724_15441966_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ES_00023089	chr16	-	3901	20	FSM	ENSMUSG00000022789.16	ENSMUST00000115749.3	3893	20	0	-8	0	0	multi-exon	FALSE	canonical	3	44	junction_19	330.475926430562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176397	16130093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176362
ES_00023090	chr16	-	4022	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_17	350.8684683735	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	-23	True	AATAAA	-13	NA	16176814	16130109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163843_16164010_16176627
ES_00023091	chr16	-	243	2	Genic_Genomic	ENSMUSG00000116729.2	novel	302	2	NA	NA	-188	60058	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAACAAAAGAAATTTC	NA	False	NA	NA	False	NA	NA	NA	16667750	16606656	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_16606678_16667528
ES_00023092	chr16	-	1711	19	NNC	ENSMUSG00000022771.18	novel	2190	21	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	176.344403839283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGAGCCCCTGGG	NA	False	NA	-28	True	AATAAA	-20	NA	16929077	16906507	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925119_16929006
ES_00023094	chr16	-	1266	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16942970	16931261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
ES_00023097	chr16	-	1895	3	FSM	ENSMUSG00000022768.18	ENSMUST00000115711.10	2103	3	208	0	208	0	multi-exon	FALSE	canonical	1	1	junction_2	1	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	16962053	16958899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_16960067_16960194_16960744_16961874
ES_00023098	chr16	-	6644	56	NNC	ENSMUSG00000041720.15	novel	6630	55	NA	NA	20	13994	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.2861810383905	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGCAAAACAAAACTGTG	NA	False	NA	NA	False	NA	NA	NA	17223737	17084220	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_17084257_17098217_17098485_17098580_17098665_17098883_17098974_17099712_17099873_17100149_17100271_17100480_17100607_17100686_17100792_17101163_17101274_17102310_17102382_17102459_17102533_17103070_17103142_17104515_17104646_17108978_17109100_17110743_17110798_17111706_17111875_17113235_17113327_17114759_17114954_17115073_17115154_17115414_17115535_17117305_17117434_17118856_17118965_17120854_17121007_17121148_17121308_17125566_17125695_17125929_17126087_17127169_17127263_17130215_17130336_17133412_17133503_17134825_17134910_17135157_17135240_17136143_17136269_17136346_17136418_17140851_17140935_17142976_17143111_17143257_17143395_17143804_17143914_17166578_17166630_17168625_17168795_17170601_17170706_17171913_17172098_17172734_17172831_17173947_17174081_17175409_17175540_17176150_17176252_17176758_17176951_17178360_17178458_17181810_17181877_17185267_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
ES_00023099	chr16	-	1012	4	ISM	ENSMUSG00000022760.18	ENSMUST00000232114.2	1120	5	383	-108	23	0	3prime_fragment	FALSE	canonical	2	7	junction_3	48.8148429157453	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7593	False	NA	1	True	AATAAA	-19	NA	17348593	17345941	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348541
ES_00023100	chr16	-	1687	3	ISM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	-65	0	0	0	intron_retention	FALSE	canonical	3	101	junction_1	8.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7210	False	NA	1	True	AATAAA	-19	NA	17348976	17345941	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_17346605_17346798_17346940_17348093
ES_00023101	chr16	-	1680	6	FSM	ENSMUSG00000022756.18	ENSMUST00000231615.2	1711	6	33	-2	6	2	multi-exon	FALSE	canonical	2	2	junction_4	6.22896460095897	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTGTGGTATTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	17394529	17390811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17392866_17393480_17393830_17394503
ES_00023104	chr16	-	257	2	NNC	ENSMUSG00000012114.18	novel	469	2	NA	NA	18166	-93	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCAATGATGTGGCTCG	8618	False	NA	NA	False	NA	NA	NA	17522519	17520797	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_17521014_17522478
ES_00023106	chr16	-	1565	9	NNC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-3216	4	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_8	76.8617874824675	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGGCTTTTTCTAAAAAA	NA	False	NA	0	True	AATAAA	-20	NA	18145531	18118684	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18145446
ES_00023107	chr16	-	1572	9	NNC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	159	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	79.1355640657221	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161602	18118688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161506
ES_00023108	chr16	-	1620	10	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	102.830797135421	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161761	18118688	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18137607_18137652_18142220_18142315_18161661
ES_00023109	chr16	-	1203	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	195	18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	90.2773504263389	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACAAAGTTTCAGTGT	4083	False	NA	NA	False	NA	NA	NA	18245159	18225997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18226057_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ES_00023110	chr16	-	1260	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	195	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACAAAGTTTCAGTGT	4083	False	NA	NA	False	NA	NA	NA	18245159	18225997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18226057_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ES_00023111	chr16	-	1920	20	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	0	52099	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	120.274616521947	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAATGAAAATAACCAAA	NA	False	NA	NA	False	NA	NA	NA	18630376	18547097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18547132_18599201_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
ES_00023112	chr16	-	983	5	NNC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	0	18418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	865.0995246213	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAAGAAACTTTAACCAAA	NA	False	NA	NA	False	NA	NA	NA	18695289	18672349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18672379_18690766_18691409_18692286_18692446_18694073_18694158_18695220
ES_00023113	chr16	-	1016	5	NNC	ENSMUSG00000022706.17	novel	778	4	NA	NA	0	18418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	896.135418059123	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAAGAAACTTTAACCAAA	NA	False	NA	NA	False	NA	NA	NA	18695289	18672349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_18672379_18690766_18691413_18692286_18692446_18694073_18694187_18695220
ES_00023114	chr16	-	1693	3	NIC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	1642	junction_2	98	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695359	18690975	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_18692446_18694073_18694158_18695220
ES_00023116	chr16	-	205	1	Intergenic	novelGene_1558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCAGCAATTCTACTTC	NA	False	NA	NA	False	NA	NA	NA	18705457	18705252	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_18705300_18705500
ES_00023117	chr16	-	360	1	FSM	ENSMUSG00000083658.2	ENSMUST00000120082.2	408	1	96	-48	96	48	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTCTCACAAACTG	NA	False	NA	NA	False	ATTAAA	-23	NA	18763319	18762959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_18763000_18763300
ES_00023120	chr16	-	2172	7	NIC	ENSMUSG00000022818.14	novel	1497	9	NA	NA	-65	559	intron_retention	TRUE	canonical	2	4	junction_1	1.5	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCTAAATTCCTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	20134866	20127860	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20134622
ES_00023121	chr16	-	9912	25	NIC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	-4529	0	intron_retention	FALSE	canonical	3	67	junction_20	90.2200627478291	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20223565	20150052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211673_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555
ES_00023123	chr16	-	2453	11	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	5895	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	800.539449371485	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATCATCAAACTGAACA	NA	False	NA	NA	False	NA	NA	NA	22084676	22057403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_22057444_22064485_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ES_00023124	chr16	-	4028	14	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-31	27151	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	440.38628820643	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAACAAAAACAACAAAA	7455	False	NA	NA	False	NA	NA	NA	22258500	22172907	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_22172936_22200064_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
ES_00023125	chr16	-	3234	7	NIC	ENSMUSG00000004462.8	novel	2980	8	NA	NA	0	-257	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	32.7193452800565	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGAGTCTGAGTGGTTTG	NA	False	NA	NA	False	AAGAAA	-12	NA	22676292	22636419	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
ES_00023126	chr16	-	1506	11	FSM	ENSMUSG00000060459.15	ENSMUST00000115349.9	1577	11	71	0	12	0	multi-exon	FALSE	canonical	1	1	junction_9	3.1559467676119	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCTCCTTTCAGCCA	9798	False	NA	NA	False	AATAAA	-21	NA	22847747	22804603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_22804819_22806994_22807076_22815772_22815860_22815960_22816069_22818563_22818737_22819280_22819366_22822681_22822790_22830746_22830920_22843589_22843672_22845797_22845909_22847464
ES_00023127	chr16	-	2671	4	ISM	ENSMUSG00000022887.10	ENSMUST00000229619.2	3786	11	37176	-10	37122	10	3prime_fragment	FALSE	canonical	1	2	junction_3	1.69967317119759	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGTTTGTTGCGAAGTG	NA	False	NA	10	True	AATAAA	-27	NA	23302224	23287102	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_23289481_23293623_23293699_23295016_23295155_23302144
ES_00023128	chr16	-	766	1	FSM	ENSMUSG00000115852.3	ENSMUST00000231284.2	934	1	146	22	146	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAATTTGACCTTCTAAG	760	False	NA	NA	False	NA	NA	NA	24199149	24198383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_24198400_24199100
ES_00023129	chr16	-	234	1	FSM	ENSMUSG00000116861.2	ENSMUST00000232466.2	433	1	158	41	158	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGACAAATACAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	28769949	28769715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_28769700_28769900
ES_00023130	chr16	-	2276	1	FSM	ENSMUSG00000097313.3	ENSMUST00000232356.2	2375	1	58	41	58	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATATTTATCCCTTCAT	NA	False	NA	NA	False	AATACA	-40	NA	29765514	29763238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_29763200_29765500
ES_00023131	chr16	-	222	1	ISM	ENSMUSG00000116951.2	ENSMUST00000231571.2	805	3	1434	25	801	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATGATAAATAAATAAATAA	5845	False	NA	NA	False	NA	NA	NA	30688108	30687886	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_30687900_30688100
ES_00023132	chr16	-	1005	7	Fusion	ENSMUSG00000022548.15_ENSMUSG00000116617.2	novel	2074	6	NA	NA	-44	-1384	multi-exon	FALSE	non_canonical	0	0	junction_1	70.4692604379148	53	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTGGGATTGAAAAATC	8666	False	NA	NA	False	NA	NA	NA	31133456	31104625	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr16_-_31104658_31115936_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133283_31133369
ES_00023133	chr16	-	1993	6	FSM	ENSMUSG00000022772.13	ENSMUST00000129900.2	1993	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	18.1284307097995	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTAAAGGTTTTTAATT	NA	False	NA	NA	False	ATTAAA	-15	NA	31809171	31794639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31794848_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757
ES_00023134	chr16	-	306	1	FSM	ENSMUSG00000116739.2	ENSMUST00000232628.2	293	1	0	-13	0	13	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGGTTTGTCTAGCAT	NA	False	NA	12	True	AATAAA	-29	NA	31805941	31805635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31805600_31805900
ES_00023135	chr16	-	330	3	FSM	ENSMUSG00000052384.15	ENSMUST00000150250.2	360	3	30	0	30	0	multi-exon	FALSE	canonical	1	2	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACTACGCCTTCCGAG	NA	False	NA	NA	False	NA	NA	NA	31966906	31963644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_31963824_31966370_31966492_31966876
ES_00023136	chr16	-	1349	8	FSM	ENSMUSG00000035699.9	ENSMUST00000231690.2	1349	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.3370506174793	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTGCTTCTGTTGGC	NA	False	NA	-8	True	AATAAA	-27	NA	32306521	32294340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32298467_32298623_32304952_32305048_32306302
ES_00023137	chr16	-	239	1	FSM	ENSMUSG00000083903.2	ENSMUST00000120478.2	609	1	72	298	72	-298	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGCACTGCAGGGAACAA	NA	False	NA	NA	False	NA	NA	NA	32410655	32410416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32410400_32410700
ES_00023138	chr16	-	204	2	Antisense	novelGene_ENSMUSG00000022791.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	229	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTTGTGACAATTCCTT	8499	False	NA	NA	False	NA	NA	NA	32469131	32441014	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr16_-_32441162_32469074
ES_00023139	chr16	-	3371	19	FSM	ENSMUSG00000035629.20	ENSMUST00000119810.2	3371	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_18	16.139151843335	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTTGTCTGCTGTCCAA	NA	False	NA	NA	False	AATATA	-19	NA	32698136	32644228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32697632
ES_00023141	chr16	-	665	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	33201045	33200223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_33200729_33200885
ES_00023142	chr16	-	701	2	Genic_Genomic	ENSMUSG00000116835.2	novel	615	1	NA	NA	0	10759	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTGCCTAACTCCCAATA	NA	False	NA	NA	False	NA	NA	NA	33827827	33816453	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr16_-_33816475_33827147
ES_00023143	chr16	-	1530	6	NIC	ENSMUSG00000034473.15	novel	3992	7	NA	NA	0	653	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	31.403184551889	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGGTCTTCCAAATTC	NA	False	NA	-23	True	AATACA	-14	NA	35184222	35133780	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_35134658_35139173_35139240_35167968_35168164_35169200_35169365_35181930_35182130_35184193
ES_00023146	chr16	-	3103	6	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	0	75418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.426907292349	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATCCCCGTGTCTCTGA	NA	False	NA	NA	False	AGTAAA	-40	NA	37360138	37254733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37254771_37330156_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
ES_00023147	chr16	-	3127	6	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	-11	75418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.426907292349	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATCCCCGTGTCTCTGA	NA	False	NA	NA	False	AGTAAA	-40	NA	37360162	37254733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37254766_37330151_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
ES_00023148	chr16	-	443	3	NNC	ENSMUSG00000022820.5	novel	971	3	NA	NA	9	2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	3020	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCTTTTTCTTGGATTT	NA	False	NA	0	True	AATAAA	-25	NA	37474719	37467960	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_37468082_37469375_37469520_37474541
ES_00023149	chr16	-	1767	7	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	5506	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	85.764535535124	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATCATTTTGGTTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	38232650	38216483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38231919
ES_00023150	chr16	-	1619	5	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	0	23969	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	530.961627615405	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTCGCATAAGACAGGAAA	NA	False	NA	NA	False	NA	NA	NA	38273065	38240422	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_38240448_38265763_38266467_38267609_38267971_38270490_38270846_38272890
ES_00023151	chr16	-	650	3	NNC	ENSMUSG00000002846.10	novel	678	3	NA	NA	5	-116	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	92	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGGTGCACACAGTGGA	NA	False	NA	-120	True	NA	NA	NA	38342998	38337137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_38337326_38338728_38338895_38342702
ES_00023152	chr16	-	3366	10	ISM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	2	0	-2	intron_retention	FALSE	canonical	3	921	junction_4	40.8985495833861	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAACCATTGGCTCCTCAT	6266	False	NA	-6	True	NA	NA	NA	38370584	38345503	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704
ES_00023154	chr16	-	5556	6	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_5	10.9544511501033	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGTGGTTGTTGGTGT	NA	False	NA	-1	True	AATAAA	-20	NA	43800149	43785395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_43789777_43791761_43791930_43793830_43794141_43794429_43794530_43799270_43799540_43799821
ES_00023155	chr16	-	1931	3	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	5	-5105	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTGCTGTTTGACAT	NA	False	NA	NA	False	AATAAA	-25	NA	43800149	43794613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_43796109_43799270_43799540_43799982
ES_00023156	chr16	-	2221	5	NIC	ENSMUSG00000022661.15	novel	879	5	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	8.1967981553775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTTTTTCTCTATGC	NA	False	NA	NA	False	AATAAA	-14	NA	45229370	45202490	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_45203821_45212607_45212752_45214955_45215224_45217331_45217659_45229218
ES_00023157	chr16	-	1086	6	NNC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	119.092233164048	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGAGTCCTGTGCATTC	NA	False	NA	-1	True	NA	NA	NA	45563265	45550083	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_45550357_45552069_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ES_00023160	chr16	-	205	1	FSM	ENSMUSG00000116640.2	ENSMUST00000231404.2	1049	1	777	67	777	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAACAAGAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48570034	48569829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_48569800_48570000
ES_00023161	chr16	-	6406	6	NNC	ENSMUSG00000022641.16	novel	8743	17	NA	NA	110360	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.08237248385031	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCAAATACATTTCTTT	5292	False	NA	-1	True	AATAAA	-35	NA	50040996	50012206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_50017200_50017227_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807
ES_00023162	chr16	-	804	3	FSM	ENSMUSG00000022639.15	ENSMUST00000169791.4	810	3	6	0	1	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATCATACTTATGTAGAT	NA	False	NA	NA	False	AATAAA	-20	NA	50553045	50547798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_50548020_50548254_50548573_50552780
ES_00023163	chr16	-	1679	1	FSM	ENSMUSG00000081453.2	ENSMUST00000118650.2	1381	1	-7	-291	-7	291	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGATACTACACTG	NA	False	NA	NA	False	ATTAAA	-21	NA	51184202	51182523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_51182500_51184200
ES_00023164	chr16	-	3206	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-94	-2964	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	2.13541565040626	690	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGTTTTTGCATTGTGAG	NA	False	NA	NA	False	ATTAAA	-18	NA	55715742	55663279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711213_55715650
ES_00023165	chr16	-	2931	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-94	-3201	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	2.24499443206436	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTCATGCTTGCAT	NA	False	NA	NA	False	CATAAA	-15	NA	55715742	55663516	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711175_55715650
ES_00023166	chr16	-	2208	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	0	4854	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	991.52980792309	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGCTCCATAGAGAT	NA	False	NA	NA	False	NA	NA	NA	55850039	55822753	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55822782_55835868_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ES_00023167	chr16	-	2459	6	NNC	ENSMUSG00000071533.12	novel	938	5	NA	NA	0	4854	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1033.23093256058	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGCTCCATAGAGAT	NA	False	NA	NA	False	NA	NA	NA	55850039	55822753	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55822782_55835868_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
ES_00023168	chr16	-	2280	6	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	0	4854	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	887.036323946207	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGCTCCATAGAGAT	NA	False	NA	NA	False	NA	NA	NA	55850059	55822753	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr16_-_55822782_55835868_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ES_00023170	chr16	-	516	3	FSM	ENSMUSG00000022757.20	ENSMUST00000136394.8	575	3	59	0	59	0	multi-exon	FALSE	canonical	3	532	junction_1	63.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACCAGTATTCCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	56533280	56524811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_56524937_56525973_56526058_56532973
ES_00023171	chr16	-	1503	6	FSM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	95	1103	95	226	multi-exon	FALSE	canonical	1	3	junction_5	1.32664991614216	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCATTTTTTTTTTCTTA	6397	False	NA	NA	False	AATAAA	-34	NA	56706434	56626626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_56627140_56631888_56632035_56642587_56642773_56643750_56643958_56646028_56646222_56706175
ES_00023173	chr16	-	202	1	Intergenic	novelGene_1638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCTTTCTTAAACTGAT	NA	False	NA	NA	False	NA	NA	NA	57052711	57052509	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_-_57052500_57052700
ES_00023174	chr16	-	562	3	FSM	ENSMUSG00000022747.18	ENSMUST00000145283.2	810	3	205	43	0	-37	multi-exon	FALSE	canonical	1	2	junction_2	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTATGCAAACTCGATTATA	NA	False	NA	NA	False	NA	NA	NA	58343916	58323266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_58323610_58327810_58327978_58343864
ES_00023175	chr16	-	473	2	FSM	ENSMUSG00000022911.12	ENSMUST00000141665.2	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAAAAACCTCACAAGT	NA	False	NA	NA	False	NA	NA	NA	62623199	62615715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_62616072_62623082
ES_00023181	chr16	-	4278	20	NIC	ENSMUSG00000022983.17	novel	4266	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	44.5324743781235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAAGTGCTCTCTATTTT	NA	False	NA	NA	False	TTTAAA	-33	NA	90081391	90025942	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ES_00023189	chr16	-	2215	10	FSM	ENSMUSG00000022960.14	ENSMUST00000117159.8	2215	10	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	60.5189491802075	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGGGTAAGAAACAAAT	NA	False	NA	-1	True	AATAAA	-19	NA	91485653	91476152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_91476915_91478044_91478113_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189_91481369_91483054_91483259_91484682_91484764_91485294
ES_00023194	chr16	-	805	4	FSM	ENSMUSG00000022940.18	ENSMUST00000113917.8	805	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	202.224847357808	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAATGAAAATAAATAAA	NA	False	NA	28	True	NA	NA	NA	94171148	94159621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_94160034_94166213_94166333_94168419_94168493_94170947
ES_00023197	chr16	-	13805	7	NIC	ENSMUSG00000022914.18	novel	1193	4	NA	NA	32	-6	intron_retention	FALSE	canonical	3	128	junction_1	29.590257405662	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAAAGTGTTTGGTCT	NA	False	NA	-9	True	NA	NA	NA	95813045	95793297	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_95804555_95805059_95805909_95806162_95806331_95809036_95809415_95809919_95810769_95811019_95811188_95812909
ES_00023202	chr16	-	6004	3	FSM	ENSMUSG00000046962.17	ENSMUST00000231263.2	889	3	-20	-5095	0	0	multi-exon	FALSE	canonical	2	6	junction_2	40	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTATTGTTTTCTTTATG	NA	False	NA	1	True	AATATA	-21	NA	97763821	97748634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr16_-_97754294_97757957_97758095_97763613
ES_00023203	chr16	-	3353	3	NIC	ENSMUSG00000046962.17	novel	3072	4	NA	NA	4	428	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAATTGTGAGACTTTA	NA	False	NA	NA	False	TATAAA	-14	NA	97763805	97750532	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_97752070_97752669_97754294_97763613
ES_00023204	chr16	-	3402	2	NIC	ENSMUSG00000046962.17	novel	1452	3	NA	NA	9	0	intron_retention	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763784	97750963	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr16_-_97754294_97763712
ES_00023205	chr16	+	233	1	Intergenic	novelGene_1503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGATGGTGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	3590484	3590717	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_3590500_3590700
ES_00023207	chr16	+	290	1	Intergenic	novelGene_1511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAGCCTTCTTGAGC	2889	False	NA	NA	False	NA	NA	NA	5083838	5084128	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_5083800_5084100
ES_00023208	chr16	+	201	1	Intergenic	novelGene_1513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTCAATTCCCAACCT	NA	False	NA	NA	False	NA	NA	NA	8550262	8550463	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_8550300_8550500
ES_00023209	chr16	+	217	1	Intergenic	novelGene_1531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAGGTCCTGAGTTCAA	NA	False	NA	NA	False	NA	NA	NA	13691479	13691696	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_13691500_13691700
ES_00023211	chr16	+	212	1	Intergenic	novelGene_1537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTAATTGCTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	15483097	15483309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_15483100_15483300
ES_00023212	chr16	+	201	1	Intergenic	novelGene_1539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGTGTATGACCATG	NA	False	NA	NA	False	NA	NA	NA	16185538	16185739	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_16185500_16185700
ES_00023213	chr16	+	215	1	Intergenic	novelGene_1540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAACTAGATTTGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	16362757	16362972	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_16362800_16363000
ES_00023214	chr16	+	201	1	Intergenic	novelGene_1541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGATTTTTTGAAAACC	NA	False	NA	NA	False	NA	NA	NA	16605362	16605563	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_16605400_16605600
ES_00023215	chr16	+	369	1	Intergenic	novelGene_1544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAATAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	16924470	16924839	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_16924500_16924800
ES_00023216	chr16	+	223	1	Intergenic	novelGene_1545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATCTTACATTTTTAAAG	6720	False	NA	NA	False	NA	NA	NA	17025111	17025334	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_17025100_17025300
ES_00023218	chr16	+	286	1	Intergenic	novelGene_1564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCATTCATTCATTCATC	9278	False	NA	NA	False	NA	NA	NA	20433721	20434007	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_20433700_20434000
ES_00023219	chr16	+	234	1	Intergenic	novelGene_1569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGATACCACATATTTCC	1920	False	NA	NA	False	NA	NA	NA	21932977	21933211	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_21933000_21933200
ES_00023220	chr16	+	229	1	Intergenic	novelGene_1571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGTTGTCTTCAGACA	NA	False	NA	NA	False	NA	NA	NA	22033938	22034167	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_22033900_22034200
ES_00023221	chr16	+	205	1	Intergenic	novelGene_1575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGGCTAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22577050	22577255	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_22577000_22577300
ES_00023222	chr16	+	486	1	Intergenic	novelGene_1586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGTTATTGTTAAAATGA	NA	False	NA	NA	False	NA	NA	NA	30772291	30772777	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_30772300_30772800
ES_00023223	chr16	+	209	1	Intergenic	novelGene_1606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAGCAGGTACAGAC	NA	False	NA	NA	False	NA	NA	NA	35676576	35676785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_35676600_35676800
ES_00023224	chr16	+	217	1	Intergenic	novelGene_1608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	35848727	35848944	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_35848700_35848900
ES_00023225	chr16	+	267	1	Intergenic	novelGene_1610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGCCCATATACATAAAAT	NA	False	NA	NA	False	NA	NA	NA	37811937	37812204	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_37811900_37812200
ES_00023226	chr16	+	207	1	Intergenic	novelGene_1620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATAGCTTTTTATCATC	NA	False	NA	NA	False	NA	NA	NA	44407823	44408030	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_44407800_44408000
ES_00023227	chr16	+	201	1	Intergenic	novelGene_1622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACCCAAGACTGGATAT	NA	False	NA	NA	False	NA	NA	NA	45752167	45752368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_45752200_45752400
ES_00023228	chr16	+	1628	1	Intergenic	novelGene_1624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGGTGCACAACCTTC	NA	False	NA	NA	False	NA	NA	NA	47878176	47879804	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_47878200_47879800
ES_00023229	chr16	+	201	1	Intergenic	novelGene_1627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1396	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAACTTCTTAAACTGCA	NA	False	NA	NA	False	NA	NA	NA	48236643	48236844	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_48236600_48236800
ES_00023230	chr16	+	3899	1	Intergenic	novelGene_1628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATGTGTATGTGTGGG	NA	False	NA	NA	False	TATAAA	-16	NA	48456406	48460305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_48456400_48460300
ES_00023231	chr16	+	801	1	Intergenic	novelGene_1630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGATATATTGGCGGCTA	NA	False	NA	NA	False	NA	NA	NA	50815490	50816291	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_50815500_50816300
ES_00023232	chr16	+	212	1	Intergenic	novelGene_1631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATGTTTTATATTTTTG	NA	False	NA	NA	False	NA	NA	NA	51013960	51014172	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_51014000_51014200
ES_00023233	chr16	+	202	1	Intergenic	novelGene_1635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATGTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55716362	55716564	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr16_+_55716400_55716600
ES_00023238	chr17	+	4866	20	FSM	ENSMUSG00000046201.10	ENSMUST00000076734.8	4866	20	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	21.7366509485669	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	9446	False	NA	11	True	AATAAA	-18	NA	3165253	3249134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ES_00023239	chr17	+	5177	22	NNC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	0	60036	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_8	45.9817078882186	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGGTTGCAAGTCCT	9716	False	NA	16	True	AATAAA	-10	NA	3165523	3309170	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_3165694_3172327_3172390_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219604_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
ES_00023240	chr17	+	1354	3	FSM	ENSMUSG00000116858.2	ENSMUST00000231685.2	1354	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGGTTGCAAGTCCT	8536	False	NA	16	True	AATAAA	-10	NA	3248384	3309170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_3248499_3281509_3281592_3308012
ES_00023241	chr17	+	2642	8	FSM	ENSMUSG00000023800.16	ENSMUST00000226905.2	3303	8	0	661	0	-661	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTCTTGACATGGGAG	NA	False	NA	NA	False	AAGAAA	-32	NA	3447504	3489048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_3447620_3462906_3463026_3464219_3465461_3471547_3471984_3477402_3477576_3479065_3479291_3487502_3487689_3488901
ES_00023242	chr17	+	423	1	FSM	ENSMUSG00000116620.2	ENSMUST00000231980.2	490	1	278	-211	278	211	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTTTACGTGGCTGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	4931178	4931601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_4931200_4931600
ES_00023243	chr17	+	10494	20	FSM	ENSMUSG00000069729.15	ENSMUST00000115797.9	11325	20	0	831	0	-831	multi-exon	FALSE	canonical	3	53	junction_5	8.75742660692188	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATCACCAAATTGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	5045348	5397100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_5046768_5090854_5091050_5147848_5148008_5177188_5177300_5293102_5293347_5314306_5314397_5329477_5329658_5341230_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ES_00023246	chr17	+	225	2	Intergenic	novelGene_1667	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCTTTTAAATAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	5278141	5326944	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_5278171_5326748
ES_00023247	chr17	+	3003	9	FSM	ENSMUSG00000034265.9	ENSMUST00000089185.6	3078	9	75	0	75	0	multi-exon	FALSE	canonical	1	2	junction_8	5.68853012649138	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTGTCAACAGCTTGC	2790	False	NA	30	True	AATAAA	-31	NA	5542906	5804086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_5543967_5698177_5698339_5735929_5736089_5762662_5762801_5765243_5765293_5775501_5775605_5777099_5777210_5781746_5781850_5802966
ES_00023249	chr17	+	3331	18	FSM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	26.0644662593364	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGCAGATTCCCAAAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	5891603	5982229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
ES_00023250	chr17	+	4043	26	FSM	ENSMUSG00000023805.18	ENSMUST00000061091.14	4072	26	29	0	29	0	multi-exon	FALSE	canonical	0	0	junction_25	5.65741990663589	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGCCTAGCAGAACTCT	NA	False	NA	NA	False	AATAAA	-15	NA	6025944	6094565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6079974_6080110_6082971_6083085_6084089_6084199_6085685_6085835_6094228
ES_00023251	chr17	+	3425	23	FSM	ENSMUSG00000023805.18	ENSMUST00000115788.8	3498	23	73	0	73	0	multi-exon	FALSE	canonical	0	0	junction_22	4.99586605964876	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGCCTAGCAGAACTCT	NA	False	NA	NA	False	AATAAA	-15	NA	6040410	6094565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6082971_6083085_6084089_6084199_6085685_6085835_6094228
ES_00023252	chr17	+	2499	11	FSM	ENSMUSG00000023805.18	ENSMUST00000115786.8	2531	11	32	0	32	0	multi-exon	FALSE	canonical	3	11	junction_9	4.6518813398452	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAAGTGTTCTATTATT	NA	False	NA	NA	False	NA	NA	NA	6047152	6070830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560
ES_00023253	chr17	+	2817	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	28	-600	-23	600	multi-exon	FALSE	canonical	3	932	junction_1	74.5	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGATGAGATCTCACTT	1718	False	NA	NA	False	NA	NA	NA	6130088	6137392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6130187_6131076_6131150_6134746
ES_00023255	chr17	+	934	4	NIC	ENSMUSG00000034377.11	novel	3147	2	NA	NA	-18	3	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	6.34209919681348	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGTTTTCCTTAGAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6157114	6175113	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_6157272_6172102_6172620_6174445_6174524_6174931
ES_00023256	chr17	+	791	3	NIC	ENSMUSG00000034377.11	novel	3147	2	NA	NA	8	-3	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	6	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATTTGAGTTTTCCT	NA	False	NA	NA	False	AATAAA	-10	NA	6157173	6175107	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_6157272_6172102_6172620_6174931
ES_00023257	chr17	+	9687	14	FSM	ENSMUSG00000034377.11	ENSMUST00000039655.3	9687	14	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	7.697690424395	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATTACATGTGTGCCA	NA	False	NA	NA	False	AATAAA	-19	NA	6188422	6290903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6189432_6227103_6227233_6235411_6235574_6248946_6249128_6251974_6252110_6257165_6257333_6263658_6263884_6264909_6265145_6269642_6269788_6272578_6272724_6274426_6274521_6279609_6279754_6281986_6284500_6286500
ES_00023258	chr17	+	591	1	FSM	ENSMUSG00000095869.2	ENSMUST00000179333.2	621	1	163	-133	163	133	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGAGACCGAGTAGATGG	7610	False	NA	NA	False	NA	NA	NA	6304340	6304931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6304300_6304900
ES_00023260	chr17	+	2646	16	ISM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	28	2550	28	0	intron_retention	FALSE	canonical	0	0	junction_14	261.918172124213	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTTTTCTTTCCTTTTA	NA	False	NA	NA	False	AATAAA	-10	NA	6307162	6356039	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851
ES_00023261	chr17	+	4509	17	FSM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	-10	0	-10	0	multi-exon	TRUE	canonical	0	0	junction_14	255.117367291508	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6307124	6358589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
ES_00023262	chr17	+	1022	5	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	-66	17171	-66	-14621	5prime_fragment	FALSE	canonical	3	500	junction_1	49.2620543623589	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAAACAAAAAACAGGCA	NA	False	NA	NA	False	NA	NA	NA	6320678	6341418	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831
ES_00023263	chr17	+	4405	17	FSM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	216.5692369082	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320744	6358589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
ES_00023264	chr17	+	1986	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-209	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320535	6358589	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
ES_00023265	chr17	+	218	1	Intergenic	novelGene_1671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATGAAAAATCAAAAAAAAA	4694	False	NA	NA	False	NA	NA	NA	6434879	6435097	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6434900_6435100
ES_00023266	chr17	+	382	2	Intergenic	novelGene_1673	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2311	junction_1	0	476	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAACAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	6462833	6463662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6462887_6463333
ES_00023267	chr17	+	219	2	Intergenic	novelGene_1675	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	644	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6652875	6680175	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6652930_6680010
ES_00023268	chr17	+	771	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697510	6703695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
ES_00023269	chr17	+	356	2	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTAGCTTCCGGTAATG	NA	False	NA	NA	False	NA	NA	NA	6843119	6848840	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6843334_6848698
ES_00023270	chr17	+	750	2	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	704	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCTCGCTGTCTCACTC	NA	False	NA	NA	False	NA	NA	NA	6843193	6844159	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6843908_6844123
ES_00023271	chr17	+	5239	3	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	461	junction_2	121.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTAGCTGAGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	6843144	6848646	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6843908_6844123_6848157_6848203
ES_00023272	chr17	+	2566	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	23	0	23	0	multi-exon	TRUE	canonical	3	5304	junction_1	1714.27572169707	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	6869092	6877078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ES_00023274	chr17	+	1555	9	FSM	ENSMUSG00000041831.18	ENSMUST00000160483.9	1504	9	0	-51	0	51	multi-exon	FALSE	canonical	3	46	junction_5	5.52268050859363	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTTCAGAGGAAAATAGAA	NA	False	NA	57	True	NA	NA	NA	6973228	7005494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ES_00023279	chr17	+	2084	2	ISM	ENSMUSG00000033450.9	ENSMUST00000036370.8	3076	10	6127	50	5192	-50	3prime_fragment	FALSE	canonical	3	257	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGATGTTATATCCTTT	NA	False	NA	NA	False	AATAAA	-30	NA	8150958	8153679	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_8151078_8151714
ES_00023282	chr17	+	3077	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_6	38.250587420542	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	30	True	ATTAAA	-22	NA	8384371	8415307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ES_00023289	chr17	+	2496	7	FSM	ENSMUSG00000073468.13	ENSMUST00000150728.8	2490	7	-6	0	-6	0	multi-exon	FALSE	canonical	3	775	junction_6	38.5947607267561	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2917	False	NA	NA	False	AATAAA	-19	NA	8529927	8546274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8542168_8543265_8543296_8545786
ES_00023291	chr17	+	810	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ES_00023294	chr17	+	3531	22	FSM	ENSMUSG00000023868.18	ENSMUST00000089085.10	7769	22	-26	4264	-26	-7	multi-exon	FALSE	canonical	1	1	junction_6	1.87476377952662	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCATATAAATTTCCTCC	NA	False	NA	NA	False	AATAAA	-4	NA	9020498	9201216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_9020978_9117692_9117822_9139335_9139365_9147923_9148045_9149341_9149392_9159972_9160114_9161703_9161860_9163201_9163253_9163767_9163827_9165627_9165680_9168181_9168325_9170328_9170422_9172568_9172756_9180691_9180835_9181719_9181804_9183396_9183548_9186250_9186407_9188359_9188533_9193554_9193667_9195967_9196049_9197736_9197826_9200364
ES_00023299	chr17	+	2446	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	1636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCCAAGTGCTGGAATT	NA	False	NA	20	True	NA	NA	NA	13135268	13143954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ES_00023301	chr17	+	3429	10	FSM	ENSMUSG00000068039.14	ENSMUST00000129632.8	3419	10	-10	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_6	171.650232942271	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTCCTGTCCTCAGTTT	NA	False	NA	5	True	ATTAAA	-20	NA	13135325	13143449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_13135517_13136684_13136771_13136929_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ES_00023304	chr17	+	1305	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	-230	4786	-230	-268	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCATACTCTGTGTGAAT	NA	False	NA	40	True	ATTAAA	-28	NA	13226473	13234235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ES_00023305	chr17	+	230	1	NIC	ENSMUSG00000006818.6	novel	4057	7	NA	NA	1980	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	370	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGCACAAAGATGGATCT	NA	False	NA	NA	False	NA	NA	NA	13255842	13256072	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_13255800_13256100
ES_00023313	chr17	+	6215	32	NNC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	-58	251	at_least_one_novel_splicesite	FALSE	canonical	1	43	junction_28	89.1011304440633	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGGATTTAAGCCTAG	NA	False	NA	NA	False	NA	NA	NA	13980742	14124882	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_13981041_14024200_14024397_14027541_14027655_14029196_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116355_14116485_14119206_14119490_14122791_14122877_14124115
ES_00023314	chr17	+	6458	32	NIC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	-58	251	combination_of_known_junctions	FALSE	canonical	1	34	junction_30	84.9919748920202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGGATTTAAGCCTAG	NA	False	NA	NA	False	NA	NA	NA	13980742	14124882	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_13981041_14024200_14024397_14027538_14027655_14029193_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119721_14122791_14122877_14124115
ES_00023317	chr17	+	7341	32	FSM	ENSMUSG00000068036.17	ENSMUST00000150848.8	5418	32	-135	-1788	0	0	multi-exon	FALSE	canonical	1	133	junction_20	64.7559574638129	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGTCCCTTGGTTGT	NA	False	NA	27	True	ATTAAA	-16	NA	13980800	14126057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_13981041_14024200_14024397_14027541_14027655_14029193_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
ES_00023323	chr17	+	2506	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGGTGCTGTTACTTTA	NA	False	NA	9	True	AATAAA	-17	NA	15163445	15166198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15163582_15163828
ES_00023324	chr17	+	2523	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTGGTGCTGTTACTT	NA	False	NA	7	True	AATAAA	-15	NA	15163491	15166196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15163582_15163763
ES_00023326	chr17	+	4562	11	FSM	ENSMUSG00000116953.2	ENSMUST00000231253.2	2909	11	0	-1653	0	1653	multi-exon	FALSE	canonical	3	61	junction_9	68.4675105433227	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGCCGCGGTCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	15199138	15213487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
ES_00023327	chr17	+	1586	11	FSM	ENSMUSG00000116953.2	ENSMUST00000231723.2	1586	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	84.5842183861741	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTAATGTTTTGGCCCT	NA	False	NA	NA	False	AAAAAG	-18	NA	15199168	15209673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15199257_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
ES_00023332	chr17	+	4172	30	Fusion	ENSMUSG00000116895.2_ENSMUSG00000036552.20	novel	2535	18	NA	NA	65	0	multi-exon	FALSE	canonical	0	0	junction_7	69.5877105883123	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15230502	15284485	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176_15242351_15261580_15262004_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
ES_00023333	chr17	+	1472	11	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	71	1721	71	-1721	5prime_fragment	FALSE	canonical	0	0	junction_7	68.9100863444532	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTCTCGAAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15230508	15240990	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527
ES_00023334	chr17	+	2075	1	Intergenic	novelGene_1700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGTCGGCGGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15242832	15244907	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_15242800_15244900
ES_00023335	chr17	+	1019	4	FSM	ENSMUSG00000036552.20	ENSMUST00000226561.2	1019	4	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	40.6147209217982	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAGAGACTTCAAACTA	NA	False	NA	NA	False	NA	NA	NA	15262509	15265916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15262679_15263266_15263407_15264584_15264687_15265308
ES_00023337	chr17	+	4037	8	NNC	ENSMUSG00000036552.20	novel	1342	8	NA	NA	-100	3	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	36.9390010140822	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAACTCTATGTTGCCTT	NA	False	NA	8	True	ATTAAA	-21	NA	15273003	15284488	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15281587
ES_00023338	chr17	+	1649	8	NIC	ENSMUSG00000036552.20	novel	1342	8	NA	NA	29	-2	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	29.1694556489685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCATGAACTCTATGTT	NA	False	NA	3	True	ATTAAA	-16	NA	15273132	15284483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
ES_00023342	chr17	+	2591	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	56	29406	10	-4821	5prime_fragment	FALSE	canonical	3	53	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGAAGTAATTTTGCTG	NA	False	NA	NA	False	AATAAA	-16	NA	15616519	15624294	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_15616823_15622006
ES_00023346	chr17	+	1907	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	-16	0	-16	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720133	15737689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ES_00023348	chr17	+	1893	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTGTTTGCTTGTC	NA	False	NA	19	True	AAGAAA	-27	NA	15720189	15737685	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ES_00023350	chr17	+	2949	2	FSM	ENSMUSG00000014767.18	ENSMUST00000149518.2	460	2	-125	-2364	-125	1872	multi-exon	FALSE	canonical	3	319	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGAGAGAATGCTGCTT	3643	False	NA	NA	False	NA	NA	NA	15735619	15739561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15735973_15736965
ES_00023352	chr17	+	4990	24	ISM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	-52	16476	-52	786	5prime_fragment	FALSE	canonical	3	287	junction_10	32.2930227676305	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTTCTATTGTTTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	15925176	15976396	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182
ES_00023353	chr17	+	8183	36	FSM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	-267	0	-267	0	multi-exon	TRUE	canonical	3	278	junction_29	37.9898375240279	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGGCTTGTCTGCTATG	NA	False	NA	NA	False	AATAAA	-23	NA	15924961	15992872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182_15975344_15977021_15977064_15977878_15978010_15978536_15978676_15978843_15978995_15980589_15980713_15981540_15981670_15982643_15982785_15985104_15985284_15986592_15986690_15987711_15987767_15988827_15989039_15990239
ES_00023358	chr17	+	328	1	FSM	ENSMUSG00000116757.2	ENSMUST00000231695.2	798	1	526	-56	526	56	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTCCAATATTAGAATC	NA	False	NA	NA	False	AATATA	-23	NA	16778033	16778361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_16778000_16778400
ES_00023361	chr17	+	1619	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	-21	0	-8	0	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATACTGGAGAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	17171792	17193939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
ES_00023364	chr17	+	2474	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-59027	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	99.9371802684066	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17225347	17309890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17225539_17281029_17281160_17305782_17305910_17306151_17306213_17307505_17308958_17309377
ES_00023365	chr17	+	2344	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-59027	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	51.0783711564885	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17225347	17309890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17225539_17257537_17257665_17257906_17257968_17307505_17309070_17309489
ES_00023366	chr17	+	2667	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	31.9826341768293	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
ES_00023367	chr17	+	2247	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	95.1955224787385	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308958_17309377
ES_00023368	chr17	+	2684	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
ES_00023369	chr17	+	2264	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	106.167320772449	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366173_17366592
ES_00023370	chr17	+	2345	4	Intergenic	novelGene_1707	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_3	58.5168541723	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCTGCTCTTTTTTCAG	NA	False	NA	30	True	NA	NA	NA	17399536	17426659	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17399714_17422956_17423084_17423325_17423387_17424679
ES_00023372	chr17	+	2435	5	Intergenic	novelGene_1708	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	38	junction_2	71.2355248454028	83	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAAGTATGCTGCTCTT	NA	False	NA	23	True	NA	NA	NA	17399592	17426652	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17399714_17399977_17400131_17422956_17423084_17423325_17423387_17424679
ES_00023373	chr17	+	2503	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	-30	-279	-30	279	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAAGTATGCTGCTCTT	6194	False	NA	17	True	NA	NA	NA	17455103	17486604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
ES_00023376	chr17	+	1596	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATTTGTCTTTTGAA	NA	False	NA	NA	False	AATGAA	-20	NA	17594833	17608016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
ES_00023384	chr17	+	2015	5	NIC	ENSMUSG00000067942.7	novel	2087	6	NA	NA	-3	7	combination_of_known_junctions	FALSE	canonical	2	12	junction_4	20.5836707124847	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAGTTCTTAAAATAGCA	NA	False	NA	NA	False	AATAAA	-22	NA	21229215	21263313	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21261684
ES_00023389	chr17	+	742	5	NNC	ENSMUSG00000023892.9	novel	2574	5	NA	NA	-14	-1832	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	49.3931928508373	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACACCAGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	21670621	21684017	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_21670670_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ES_00023390	chr17	+	2588	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTCTCTCTCTCTGT	NA	False	NA	2	True	AATAAA	-18	NA	21670621	21685849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ES_00023401	chr17	+	4347	6	FSM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-138	0	-138	0	multi-exon	FALSE	canonical	3	33	junction_5	11.689311356962	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTGGAAATTCAATGAG	NA	False	NA	9	True	AATAAA	-24	NA	21926584	21944617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924_21940052_21940968
ES_00023406	chr17	+	2990	4	FSM	ENSMUSG00000044501.18	ENSMUST00000088765.9	2973	4	-17	0	-17	0	multi-exon	FALSE	canonical	3	11	junction_1	13.4412301024373	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTCTAGTCATTTATCT	NA	False	NA	24	True	AATAAA	-24	NA	22580416	22596261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_22580689_22590971_22591070_22592623_22592751_22593768
ES_00023407	chr17	+	4341	3	FSM	ENSMUSG00000044501.18	ENSMUST00000149699.8	2876	3	-12	-1453	-12	1453	multi-exon	FALSE	canonical	2	8	junction_1	16	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGACATTACCTCAGAGT	NA	False	NA	NA	False	NA	NA	NA	22580421	22597715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_22580689_22592623_22592751_22593768
ES_00023408	chr17	+	388	3	FSM	ENSMUSG00000071266.14	ENSMUST00000141831.8	913	3	2	523	2	-523	multi-exon	TRUE	canonical	2	4	junction_2	40.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGCCAATTTCAATTAAA	NA	False	NA	NA	False	NA	NA	NA	22643204	22665874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_22643411_22647461_22647547_22665777
ES_00023410	chr17	+	2935	7	FSM	ENSMUSG00000071266.14	ENSMUST00000088763.13	2935	7	-9	9	0	-9	multi-exon	FALSE	canonical	3	18	junction_4	23.5849528301415	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACTTAGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22643239	22675661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670059_22670134_22672432_22672560_22673404
ES_00023411	chr17	+	1031	8	NNC	ENSMUSG00000071266.14	novel	2935	7	NA	NA	13	-1157	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	35.4993532565405	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTGTGTGTTCTATC	NA	False	NA	NA	False	TATAAA	-14	NA	22643261	22673662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_22643411_22647461_22647547_22663148_22663273_22665528_22665646_22665777_22665875_22670059_22670134_22672432_22672560_22673404
ES_00023423	chr17	+	2902	7	FSM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	45.7484061653154	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCATAGCTCTTCTTGTC	3071	False	NA	26	True	AATAAA	-40	NA	23945442	23955701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_23945616_23951310_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ES_00023424	chr17	+	1599	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	19	-6	at_least_one_novel_splicesite	TRUE	canonical	3	98	junction_3	138.628412436607	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGCAGCATAGCTCTT	2969	False	NA	20	True	AATAAA	-34	NA	23945340	23955695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ES_00023428	chr17	+	8564	14	FSM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	53.0972090553492	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTGTAGTCTTTACTT	NA	False	NA	16	True	AATAAA	-18	NA	24022194	24043715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24022373_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
ES_00023433	chr17	+	399	1	FSM	ENSMUSG00000095266.3	ENSMUST00000178572.3	508	1	97	12	97	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACAACTGAGACAGGTA	NA	False	NA	NA	False	NA	NA	NA	24242844	24243243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24242800_24243200
ES_00023435	chr17	+	1110	6	NNC	ENSMUSG00000050762.6	novel	1253	6	NA	NA	1166	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	5.74804314527997	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	5697	False	NA	NA	False	NA	NA	NA	24258283	24264928	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_24258359_24261027_24261055_24261775_24261939_24263233_24263506_24263832_24264003_24264525
ES_00023438	chr17	+	6476	33	FSM	ENSMUSG00000024130.17	ENSMUST00000039013.15	6476	33	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	5.69230566203186	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTCTTTGAGTCATACAT	NA	False	NA	10	True	AATAAA	-17	NA	24570996	24629175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24571226_24576892_24576966_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ES_00023439	chr17	+	1662	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	-16	0	-16	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	868	False	NA	NA	False	AATAAA	-18	NA	24633603	24644869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ES_00023440	chr17	+	1790	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	-21	0	-16	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	868	False	NA	NA	False	AATAAA	-24	NA	24633603	24644875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ES_00023441	chr17	+	1932	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	-12	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	901	False	NA	NA	False	AATAAA	-18	NA	24633636	24644869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ES_00023442	chr17	+	1833	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	-17	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	884	False	NA	NA	False	AATAAA	-24	NA	24633619	24644875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ES_00023444	chr17	+	2207	8	NIC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	495	junction_1	374.654888816743	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	932	False	NA	NA	False	AATAAA	-18	NA	24633667	24644869	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ES_00023445	chr17	+	2595	5	FSM	ENSMUSG00000034681.18	ENSMUST00000234832.2	777	5	-1101	-717	520	0	multi-exon	FALSE	canonical	3	1315	junction_2	163.799420023393	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	5250	False	NA	NA	False	AATAAA	-18	NA	24637985	24644869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ES_00023452	chr17	+	5630	18	FSM	ENSMUSG00000033597.10	ENSMUST00000234717.2	5630	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	3.33483241954315	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGCTTGGCTCACACT	7944	False	NA	NA	False	AATAAA	-12	NA	24707848	24727642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24708038_24714939_24714992_24715093_24715192_24715399_24715546_24715627_24715724_24715837_24715969_24717831_24717941_24718034_24718144_24718226_24718322_24718476_24718595_24719670_24719773_24719864_24719954_24720033_24720119_24720203_24720308_24722774_24722914_24722993_24724995_24725496_24725912_24726090
ES_00023455	chr17	+	499	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	-22	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTTTCAGACGTTGT	4761	False	NA	13	True	AATAAA	-16	NA	24747218	24747717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24747200_24747700
ES_00023463	chr17	+	2095	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	895	False	NA	10	True	AATAAA	-22	NA	24851642	24857810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ES_00023464	chr17	+	961	6	NNC	ENSMUSG00000041429.4	novel	2084	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	95.2189056857933	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	920	False	NA	10	True	AATAAA	-22	NA	24851667	24857810	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_24851724_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ES_00023466	chr17	+	3368	12	FSM	ENSMUSG00000041130.11	ENSMUST00000234956.2	3352	12	-16	0	-16	0	multi-exon	FALSE	canonical	3	262	junction_10	128.150802179204	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	1160	False	NA	12	True	AATAAA	-20	NA	24888644	24900990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897688_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ES_00023467	chr17	+	3283	12	FSM	ENSMUSG00000041130.11	ENSMUST00000047179.7	3283	12	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_6	142.469309439723	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	1236	False	NA	12	True	AATAAA	-20	NA	24888720	24900990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897679_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ES_00023471	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	0	0	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTTTTTGTCTGTCT	6237	False	NA	4	True	AATAAA	-23	NA	24939083	24940903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ES_00023475	chr17	+	1211	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955655	24961745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
ES_00023479	chr17	+	2625	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTGACCTAGAGTGTG	7775	False	NA	9	True	ATTAAA	-16	NA	25097231	25100984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25097799_25098926
ES_00023482	chr17	+	1955	6	FSM	ENSMUSG00000024160.17	ENSMUST00000119829.8	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	60.8966337329084	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGCCCAAGCTGCCTG	NA	False	NA	NA	False	ATTAAA	-10	NA	25105710	25111111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25110111_25110333
ES_00023487	chr17	+	715	5	FSM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	9.82344135219425	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAAAAGTAGTGTTAAG	NA	False	NA	36	True	AATAAA	-35	NA	25115473	25116496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
ES_00023490	chr17	+	4067	25	FSM	ENSMUSG00000036636.11	ENSMUST00000040729.9	4071	25	4	0	4	0	multi-exon	FALSE	canonical	3	111	junction_8	12.081896466293	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTATTTTTATTTTGACT	NA	False	NA	20	True	NA	NA	NA	25352368	25381078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
ES_00023498	chr17	+	665	3	FSM	ENSMUSG00000033200.17	ENSMUST00000162021.8	777	3	108	4	77	-4	multi-exon	FALSE	canonical	0	0	junction_1	0.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAACGCTGAGCCTGACA	NA	False	NA	NA	False	CATAAA	-15	NA	25589634	25593410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25589675_25592698_25592845_25592931
ES_00023500	chr17	+	1747	10	NIC	ENSMUSG00000002279.20	novel	1861	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	34.0362914519556	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798147	25881697	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_25798354_25804516_25804827_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ES_00023501	chr17	+	1863	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	-5	0	-2	0	multi-exon	FALSE	canonical	1	15	junction_2	37.5467708331888	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798145	25881800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ES_00023506	chr17	+	1759	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237785.2	1761	6	-2	4	-2	0	multi-exon	FALSE	canonical	3	14	junction_1	25.198412648419	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTTGAGAGTGACCAT	NA	False	NA	14	True	AATAAA	-11	NA	25946688	25950428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25946822_25947154_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ES_00023511	chr17	+	3560	6	FSM	ENSMUSG00000025738.9	ENSMUST00000045692.9	3489	6	-71	0	-71	0	multi-exon	TRUE	canonical	3	16	junction_5	4.22374241638857	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26027987	26040229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26028361_26035390_26036038_26036653_26037163_26037471_26037557_26037869_26037934_26038347
ES_00023516	chr17	+	891	4	FSM	ENSMUSG00000025731.17	ENSMUST00000110456.3	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	203.922098415601	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7158	False	NA	30	True	AATAAA	-31	NA	26094437	26096134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26094701_26095193_26095254_26095468_26095537_26095634
ES_00023524	chr17	+	1154	4	FSM	ENSMUSG00000024181.10	ENSMUST00000236040.2	1134	4	-20	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	672.139039848817	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26342824_26343529_26343683_26344230_26344539_26345244
ES_00023525	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	671.536670629386	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
ES_00023527	chr17	+	2890	10	FSM	ENSMUSG00000024182.18	ENSMUST00020183805.1	2890	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_8	47.4952889151735	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGTTCAAGAGGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	26357923	26414268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26358016_26361591_26362551_26392613_26392755_26401463_26401561_26403150_26403289_26406677_26407196_26407547_26407719_26408959_26409206_26412912_26413081_26413908
ES_00023531	chr17	+	2670	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471957	26499694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ES_00023532	chr17	+	1687	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	-15	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTACATTAGTGTATT	NA	False	NA	17	True	ATTAAA	-29	NA	26471957	26499697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ES_00023539	chr17	+	2836	3	FSM	ENSMUSG00000015575.16	ENSMUST00000167352.2	2812	3	-24	0	18	0	multi-exon	FALSE	canonical	3	1484	junction_2	17.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	NA	False	NA	NA	False	ATTAAA	-45	NA	26895361	26916925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26895553_26901651_26901700_26914328
ES_00023541	chr17	+	762	4	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	381	junction_3	528.401993435553	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895388	26918621	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_26895553_26901651_26901700_26914328_26914443_26918185
ES_00023546	chr17	+	2540	10	NIC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	138.283926920103	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTCCATTGTGATGTG	NA	False	NA	4	True	AATAAA	-16	NA	27136097	27151553	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_27136260_27139770_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ES_00023548	chr17	+	2946	11	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	0	169	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	133.860225608655	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCCAGTGCACTCCAC	NA	False	NA	NA	False	NA	NA	NA	27136146	27151726	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_27136260_27139770_27139906_27139993_27140094_27140552_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ES_00023549	chr17	+	2441	15	FSM	ENSMUSG00000024193.9	ENSMUST00000073724.7	2522	15	67	14	-12	1	multi-exon	FALSE	canonical	2	7	junction_11	6.30718734816859	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATGAGTCATTTTGAAAG	NA	False	NA	8	True	AATAAA	-18	NA	27152092	27156868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155366_27155485_27155655_27155744_27155840_27156027_27156109_27156253
ES_00023553	chr17	+	356	3	FSM	ENSMUSG00000048731.16	ENSMUST00000151920.2	1605	3	15	1234	15	-1234	multi-exon	FALSE	canonical	2	3	junction_2	28	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGCCATTTCACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	27237001	27244433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27237145_27241224_27241315_27244310
ES_00023554	chr17	+	942	6	NIC	ENSMUSG00000048731.16	novel	1138	7	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	9.84682690007294	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27237038	27255351	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_27237145_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
ES_00023555	chr17	+	1524	6	FSM	ENSMUSG00000048731.16	ENSMUST00000053683.7	1525	6	0	1	0	0	multi-exon	FALSE	canonical	2	5	junction_1	9.15204895091804	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27248232	27255351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27248921_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
ES_00023563	chr17	+	1642	5	FSM	ENSMUSG00000046711.17	ENSMUST00000114888.11	1631	5	-11	0	0	0	multi-exon	FALSE	canonical	3	2165	junction_2	1373.00680533638	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTCTGGTGTAAGGAG	NA	False	NA	NA	False	AATAAA	-21	NA	27775547	27782642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ES_00023564	chr17	+	2020	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231874.2	2001	5	-19	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	2057.89800221002	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	AATAAA	-22	NA	27775558	27782643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ES_00023565	chr17	+	602	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231866.2	584	5	-18	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	1926.39253204013	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGGATTCGGCTCAGTC	NA	False	NA	NA	False	NA	NA	NA	27775587	27781613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780438_27780486_27781411
ES_00023566	chr17	+	1040	5	FSM	ENSMUSG00000046711.17	ENSMUST00000119486.9	1030	5	-10	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1821.9597964829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAACAGGAAGTAGGATG	NA	False	NA	NA	False	NA	NA	NA	27775577	27781999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ES_00023567	chr17	+	1728	6	FSM	ENSMUSG00000046711.17	ENSMUST00000231825.2	1717	6	-11	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2331.48484876055	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	AATAAA	-22	NA	27775577	27782643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27775686_27775925_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ES_00023570	chr17	+	1616	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117600.9	1595	5	-21	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	1949.43562345618	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGGTGTAAGGAGCA	NA	False	NA	NA	False	AATAAA	-23	NA	27775605	27782644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781414
ES_00023571	chr17	+	1903	5	FSM	ENSMUSG00000046711.17	ENSMUST00000118570.2	1898	5	-5	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	2173.91908485574	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACAGTCTCTGGTGTA	NA	False	NA	NA	False	AATAAA	-16	NA	27775636	27782637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ES_00023573	chr17	+	1457	8	FSM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	-89	0	-89	0	multi-exon	FALSE	canonical	1	3	junction_1	17.3511159436445	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCGTTTGCAGCCTACC	NA	False	NA	NA	False	TTTAAA	-45	NA	27923341	27927666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27923527_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ES_00023581	chr17	+	548	5	FSM	ENSMUSG00000039512.13	ENSMUST00000233809.2	548	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	30.9303653389351	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACAGCCTTAGCATTCTG	5950	False	NA	NA	False	NA	NA	NA	28075579	28098387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28075644_28095636_28095800_28095897_28095937_28096295_28096388_28098197
ES_00023594	chr17	+	1971	9	NIC	ENSMUSG00000007570.17	novel	1942	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	57.121444090639	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	317	False	NA	11	True	AATAAA	-13	NA	28532503	28545540	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
ES_00023595	chr17	+	1942	9	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_3	35.076478942448	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	317	False	NA	11	True	AATAAA	-13	NA	28532503	28545540	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ES_00023596	chr17	+	2210	9	FSM	ENSMUSG00000007570.17	ENSMUST00000124870.8	2193	9	-17	0	7	0	multi-exon	FALSE	canonical	3	26	junction_8	50.6229937874085	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	317	False	NA	12	True	AATAAA	-14	NA	28532503	28545541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537035_28537382_28539763_28539831_28541619_28541746_28545067
ES_00023597	chr17	+	2068	10	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	40.6086410557539	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTTGGTGGCTCAGC	317	False	NA	13	True	AATAAA	-15	NA	28532503	28545542	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
ES_00023598	chr17	+	2021	10	FSM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	4	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	20.9655802580218	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGTGGCTCAGCCCTG	310	False	NA	17	True	AATAAA	-19	NA	28532496	28545546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ES_00023599	chr17	+	1848	9	FSM	ENSMUSG00000007570.17	ENSMUST00000114804.11	1842	9	-6	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	47.2385898921634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTTGGTGGCTCAGC	353	False	NA	13	True	AATAAA	-15	NA	28532539	28545542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28545125
ES_00023600	chr17	+	672	4	FSM	ENSMUSG00000007570.17	ENSMUST00000156505.9	672	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	66.2537210695034	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	4892	False	NA	12	True	AATAAA	-14	NA	28537078	28545541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28537131_28537302_28537382_28539763_28539831_28545067
ES_00023602	chr17	+	919	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	-18	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547541	28550001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ES_00023605	chr17	+	1025	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	-3	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547570	28550002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
ES_00023606	chr17	+	1221	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	-19	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547570	28550006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
ES_00023607	chr17	+	1618	2	FSM	ENSMUSG00000037805.16	ENSMUST00000141049.2	1618	2	0	0	0	0	multi-exon	FALSE	canonical	3	8416	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28548251	28550001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28549672_28549803
ES_00023609	chr17	+	336	1	Intergenic	novelGene_1743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCTTTTTTAAAAACAGT	NA	False	NA	NA	False	NA	NA	NA	28785935	28786271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_28785900_28786300
ES_00023611	chr17	+	3593	13	FSM	ENSMUSG00000053436.16	ENSMUST00000114754.8	3592	13	-1	0	-1	0	multi-exon	FALSE	canonical	1	3	junction_1	138.616652639172	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTTTCTCAGGTTTAT	5076	False	NA	11	True	AATAAA	-18	NA	28910314	28967378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28910830_28911729_28911775_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28955984_28956065_28960761_28960841_28963956_28964131_28965244
ES_00023619	chr17	+	5666	13	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15726	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	73.5222471999689	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTGCGGTGCTGTTT	NA	False	NA	4	True	AATAAA	-13	NA	29004337	29057515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_29004515_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ES_00023622	chr17	+	6785	13	FSM	ENSMUSG00000063952.17	ENSMUST00000004985.11	7169	13	0	384	0	-384	multi-exon	FALSE	canonical	0	0	junction_5	90.6136487143815	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCATTGTGAGGGGCC	NA	False	NA	NA	False	CATAAA	-40	NA	29020063	29058539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29020336_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ES_00023623	chr17	+	4223	11	FSM	ENSMUSG00000063952.17	ENSMUST00000233701.2	4223	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	101.565791485126	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCTCCAGCAGGCATGC	NA	False	NA	NA	False	NA	NA	NA	29024902	29056347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29054735_29054891_29055483
ES_00023624	chr17	+	5420	13	NNC	ENSMUSG00000063952.17	novel	7169	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	96.6530162775873	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATATGATGTCTTATTTT	NA	False	NA	38	True	AATACA	-20	NA	29024902	29057467	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483_29056446_29056466
ES_00023625	chr17	+	4525	10	FSM	ENSMUSG00000063952.17	ENSMUST00000156029.8	4525	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	82.1810707831294	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATATGATGTCTTATTTT	NA	False	NA	38	True	AATACA	-20	NA	29029524	29057467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735
ES_00023634	chr17	+	1912	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	1	0	1	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4648	False	NA	24	True	NA	NA	NA	29312743	29319696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29312836_29317370_29317812_29318317
ES_00023635	chr17	+	1179	2	FSM	ENSMUSG00000023067.15	ENSMUST00000122348.3	1172	2	-7	0	-7	0	multi-exon	FALSE	canonical	3	1159	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAACAAAAAAAACCAAAA	8771	False	NA	80	True	AAAAAG	-8	NA	29316866	29318551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29317812_29318317
ES_00023637	chr17	+	2803	9	FSM	ENSMUSG00000052712.18	ENSMUST00000064709.13	2812	9	9	0	9	0	multi-exon	FALSE	canonical	3	208	junction_1	54.6168472176855	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTACCTTCTTACTGG	320	False	NA	18	True	NA	NA	NA	29487770	29521864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ES_00023638	chr17	+	12673	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	-16	1202	-16	-1202	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTGCATAATAGCTTAG	332	False	NA	NA	False	NA	NA	NA	29487782	29531837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ES_00023639	chr17	+	1599	9	NNC	ENSMUSG00000052712.18	novel	1694	9	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	111.000492679087	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	486	False	NA	15	True	AATAAA	-16	NA	29487936	29520499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_29488304_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ES_00023646	chr17	+	426	2	NNC	ENSMUSG00000099329.3	novel	902	7	NA	NA	9	-128990	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	29768781	29771996	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_29768969_29771757
ES_00023647	chr17	+	2035	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	12	-22009	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTGGCATAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	29768776	29803859	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
ES_00023648	chr17	+	209	1	Intergenic	novelGene_1751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAACACAAA	2451	False	NA	NA	False	AATAAA	-10	NA	29771803	29772012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29771800_29772000
ES_00023657	chr17	+	3742	5	FSM	ENSMUSG00000044477.13	ENSMUST00000226421.3	3489	5	-260	7	55	-7	multi-exon	FALSE	canonical	2	11	junction_1	47.3623004086584	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCACCACTTGCAGTGA	NA	False	NA	NA	False	AATAAA	-13	NA	30223761	30429795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30224283_30354296_30354480_30372276_30372343_30411536_30411705_30426991
ES_00023658	chr17	+	2656	5	FSM	ENSMUSG00000044477.13	ENSMUST00000057897.10	2640	5	-16	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	41.3037528561268	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTGTCTGTGTTG	NA	False	NA	5	True	ATTAAA	-14	NA	30224021	30428994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30411536_30411705_30426991
ES_00023662	chr17	+	14583	93	FSM	ENSMUSG00000033826.11	ENSMUST00000170651.2	14583	93	0	0	0	0	multi-exon	TRUE	canonical	2	15	junction_44	14.4763185797332	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTCGCCTGTCTCTTCC	NA	False	NA	24	True	ATTAAA	-15	NA	30843327	31094238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30843535_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922_30913036_30914083_30914191_30919363_30919437_30920818_30921006_30923628_30923826_30925358_30925486_30927264_30927501_30929475_30929581_30931246_30931361_30932007_30932071_30934453_30934555_30936737_30936876_30937800_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054_30948217_30949987_30950213_30955002_30955176_30956224_30956404_30958541_30958730_30960100_30960188_30960281_30960390_30961629_30961765_30963487_30963650_30965731_30965979_30966120_30966363_30966820_30966962_30967481_30967720_30970420_30970564_30971020_30971156_30971795_30971919_30973947_30974162_30975676_30975787_30977218_30977383_30978543_30978737_30979979_30980103_30981614_30981746_30984569_30984724_30986772_30986938_30988616_30988844_30990770_30990890_30992502_30992607_30993919_30994097_30997980_30998149_30998696_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
ES_00023663	chr17	+	3077	11	FSM	ENSMUSG00000033826.11	ENSMUST00000237551.2	3099	11	0	22	0	-22	multi-exon	FALSE	canonical	3	31	junction_2	9.52942810456116	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAAAAAACCTAACT	199	False	NA	NA	False	NA	NA	NA	30845908	30878173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942
ES_00023664	chr17	+	16610	93	FSM	ENSMUSG00000033826.11	ENSMUST00000236140.2	16685	93	0	75	0	-75	multi-exon	FALSE	canonical	2	15	junction_44	14.4763185797332	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGCAAACCAGCCAGCAG	199	False	NA	NA	False	AAGAAA	-4	NA	30845908	31096264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922_30913036_30914083_30914191_30919363_30919437_30920818_30921006_30923628_30923826_30925358_30925486_30927264_30927501_30929475_30929581_30931246_30931361_30932007_30932071_30934453_30934555_30936737_30936876_30937800_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054_30948217_30949987_30950213_30955002_30955176_30956224_30956404_30958541_30958730_30960100_30960188_30960281_30960390_30961629_30961765_30963487_30963650_30965731_30965979_30966120_30966363_30966820_30966962_30967481_30967720_30970420_30970564_30971020_30971156_30971795_30971919_30973947_30974162_30975676_30975787_30977218_30977383_30978543_30978737_30979979_30980103_30981614_30981746_30984569_30984724_30986772_30986938_30988616_30988844_30990770_30990890_30992502_30992607_30993919_30994097_30997980_30998149_30998696_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
ES_00023665	chr17	+	1695	6	FSM	ENSMUSG00000033826.11	ENSMUST00000236948.2	1488	6	0	-207	0	207	multi-exon	FALSE	canonical	3	35	junction_2	3.54400902933387	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGATTTCAATGCTGTGG	1459	False	NA	NA	False	NA	NA	NA	30940014	30949065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054
ES_00023667	chr17	+	411	3	FSM	ENSMUSG00000024030.8	ENSMUST00000236427.2	1372	3	0	961	0	-961	multi-exon	FALSE	canonical	1	1	junction_2	17	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCACCACCCACAGTGGG	NA	False	NA	NA	False	NA	NA	NA	31276700	31301614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31276831_31283358_31283603_31301577
ES_00023668	chr17	+	2969	13	NIC	ENSMUSG00000042345.16	novel	2539	13	NA	NA	16	318	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.05300659911163	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCGCTCAGGTCGTTTT	NA	False	NA	7	True	CATAAA	-20	NA	31431102	31461382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_31431334_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
ES_00023673	chr17	+	3400	20	FSM	ENSMUSG00000024036.17	ENSMUST00000165149.3	3389	20	-11	0	0	0	multi-exon	TRUE	canonical	3	70	junction_8	17.4641698891444	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGATTTCCATCCAAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	31515177	31569701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
ES_00023674	chr17	+	2732	20	NIC	ENSMUSG00000024036.17	novel	1288	12	NA	NA	12	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	29.9874396605666	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCCCACATATAATACAA	NA	False	NA	NA	False	AATAAA	-24	NA	31515978	31569680	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_31516044_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
ES_00023680	chr17	+	2066	3	FSM	ENSMUSG00000024038.18	ENSMUST00000189436.3	2021	3	-45	0	-10	0	multi-exon	FALSE	canonical	2	5	junction_2	1848	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	31739078	31748372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31739236_31740542_31740667_31746587
ES_00023684	chr17	+	2170	12	FSM	ENSMUSG00000006705.14	ENSMUST00000175806.9	2170	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	48.0870422916989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTATGACTATATTGAGGA	NA	False	NA	NA	False	TATAAA	-15	NA	31783835	31824466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31783863_31800777_31801025_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
ES_00023688	chr17	+	544	6	FSM	ENSMUSG00000058392.14	ENSMUST00000237131.2	544	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	271.418790801227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGCGGACCAGAACCTCA	NA	False	NA	NA	False	NA	NA	NA	32255397	32270121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_32255579_32264902_32264986_32267526_32267613_32268399_32268462_32268922_32269053_32270119
ES_00023689	chr17	+	4874	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	0	0	0	0	multi-exon	TRUE	canonical	3	488	junction_12	76.5992747282172	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	22	True	ATTAAA	-24	NA	32255073	32281839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ES_00023690	chr17	+	4487	13	FSM	ENSMUSG00000058392.14	ENSMUST00000147076.8	4487	13	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_9	78.6747877164103	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCGGATTGGTCTTTGA	NA	False	NA	13	True	ATTAAA	-15	NA	32267258	32281830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ES_00023699	chr17	+	2241	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	1	0	1	0	multi-exon	TRUE	canonical	3	41	junction_1	14.6806278249036	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755532	32770772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ES_00023706	chr17	+	1672	3	FSM	ENSMUSG00000024299.18	ENSMUST00000234715.2	2533	3	-6	867	0	-867	multi-exon	FALSE	canonical	3	35	junction_2	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTTTCTGTCCCCCATC	NA	False	NA	NA	False	NA	NA	NA	33743177	33749083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33743233_33747257_33747445_33747653
ES_00023708	chr17	+	1654	5	FSM	ENSMUSG00000024299.18	ENSMUST00000174170.3	1798	5	-12	156	0	-156	multi-exon	FALSE	canonical	3	25	junction_4	5.3851648071345	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTCAGTGGTAAAGCGC	NA	False	NA	NA	False	NA	NA	NA	33743183	33751467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553
ES_00023709	chr17	+	4015	25	NIC	ENSMUSG00000024299.18	novel	4043	25	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_9	9.55457641947332	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCCTGACCGGGTG	NA	False	NA	5	True	AATAAA	-18	NA	33743203	33772744	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553_33750772_33756065_33756150_33756252_33756399_33756873_33756918_33757041_33757148_33757237_33757385_33757544_33757687_33762171_33762280_33762609_33762756_33762845_33762910_33763928_33764032_33764277_33764412_33764515_33764640_33767796_33767878_33767970_33768135_33768232_33768360_33768457_33768584_33769439_33769645_33769987_33770165_33770241_33770405_33772058
ES_00023711	chr17	+	2434	13	FSM	ENSMUSG00000024299.18	ENSMUST00000174666.2	2422	13	-24	12	-24	0	multi-exon	FALSE	canonical	2	4	junction_8	7.08088192874933	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCCTGACCGGGTG	1406	False	NA	5	True	AATAAA	-18	NA	33762475	33772744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33762756_33762845_33762910_33763928_33764032_33764277_33764412_33764515_33764640_33767796_33767878_33767970_33768135_33768232_33768360_33768457_33768584_33769439_33769645_33769987_33770165_33770241_33770405_33772058
ES_00023714	chr17	+	1209	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	2	0	2	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4919	False	NA	29	True	AATACA	-19	NA	33848065	33850690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ES_00023715	chr17	+	1562	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	-18	0	-7	0	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACATGATTTTTACCT	4910	False	NA	3	True	NA	NA	NA	33848056	33850664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
ES_00023728	chr17	+	696	2	FSM	ENSMUSG00000042099.17	ENSMUST00000174608.2	696	2	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	1645	False	NA	12	True	AATAAA	-15	NA	34041116	34041891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34041181_34041259
ES_00023729	chr17	+	1416	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173182.2	610	2	-47	-759	-25	759	multi-exon	FALSE	canonical	3	8081	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGATCAGTTTCACA	4049	False	NA	NA	False	NA	NA	NA	34043520	34045856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34043655_34044574
ES_00023730	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	4074	False	NA	33	True	AATATA	-24	NA	34043545	34057291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
ES_00023731	chr17	+	443	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	0	-5	0	0	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTCTTTTCTTAGTAT	4106	False	NA	30	True	AATATA	-21	NA	34043577	34057288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34043655_34048640_34048791_34057072
ES_00023732	chr17	+	419	2	FSM	ENSMUSG00000041881.14	ENSMUST00000174498.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4147	False	NA	11	True	NA	NA	NA	34043618	34044820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34043792_34044574
ES_00023734	chr17	+	640	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173946.2	640	2	0	0	0	0	multi-exon	FALSE	canonical	3	8715	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTCTTTTCTTAGTAT	8895	False	NA	30	True	AATATA	-21	NA	34048366	34057288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34048791_34057072
ES_00023736	chr17	+	1417	4	FSM	ENSMUSG00000002308.17	ENSMUST00000234506.2	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	11.8977121983832	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7055	False	NA	23	True	ATTAAA	-16	NA	34062126	34067727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34062266_34064989_34065116_34066468_34067153_34067259
ES_00023737	chr17	+	1191	5	FSM	ENSMUSG00000002308.17	ENSMUST00000087559.8	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	143.673240375513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGCCTCTAGCCTGT	7328	False	NA	21	True	ATTAAA	-14	NA	34062399	34067725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34062606_34064989_34065116_34066468_34066700_34066990_34067153_34067259
ES_00023741	chr17	+	882	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11935	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112173	34125649	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_34112309_34124501_34124892_34125292
ES_00023742	chr17	+	821	3	FSM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	-14	0	-14	0	multi-exon	FALSE	canonical	3	7	junction_1	58	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	1245	False	NA	13	True	NA	NA	NA	34124094	34125649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34124169_34124501_34124892_34125292
ES_00023743	chr17	+	2581	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5569	False	NA	12	True	AATAAA	-23	NA	34128418	34134564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ES_00023747	chr17	+	2617	2	FSM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	-5	0	-5	0	multi-exon	FALSE	canonical	3	107	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCCCAACACCCCT	NA	False	NA	11	True	ATTAAA	-20	NA	34135139	34138299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34135248_34135790
ES_00023748	chr17	+	5500	9	Fusion	ENSMUSG00000051390.11_ENSMUSG00000024308.16	novel	2898	8	NA	NA	0	0	multi-exon	FALSE	canonical	3	107	junction_1	46.628853728137	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	NA	False	NA	12	True	AATAAA	-17	NA	34135159	34148265	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_34135248_34135790_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
ES_00023749	chr17	+	2898	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCCTCTCATTCTCCC	292	False	NA	13	True	AATAAA	-18	NA	34138305	34148266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
ES_00023750	chr17	+	2589	8	FSM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	40.4101421902563	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	597	False	NA	12	True	AATAAA	-17	NA	34138610	34148265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
ES_00023751	chr17	+	3252	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	3234	False	NA	12	True	AATAAA	-18	NA	34148555	34156661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ES_00023761	chr17	+	3383	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	0	0	0	0	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTGATTTTGTACTGT	NA	False	NA	31	True	NA	NA	NA	34174785	34186009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ES_00023762	chr17	+	2799	21	NNC	ENSMUSG00000024319.19	novel	3383	20	NA	NA	-29	31626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	70.7377374532152	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	34174859	34217635	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932_34185465_34217600
ES_00023763	chr17	+	3346	20	NNC	ENSMUSG00000024319.19	novel	3383	20	NA	NA	21	-31	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_14	69.3361877031594	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTAAAGTTATTTTCA	NA	False	NA	0	True	NA	NA	NA	34174806	34185978	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181536_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ES_00023766	chr17	+	2627	10	FSM	ENSMUSG00000039656.18	ENSMUST00000044858.16	2627	10	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	51.2967642711639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCATTTTCTGGACTGAG	NA	False	NA	19	True	CATAAA	-19	NA	34250785	34257371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
ES_00023767	chr17	+	2299	10	FSM	ENSMUSG00000039656.18	ENSMUST00000116612.3	2283	10	-16	0	-16	0	multi-exon	FALSE	canonical	3	20	junction_1	64.8690989609074	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34251358	34257367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
ES_00023776	chr17	+	1082	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524899	34535173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ES_00023781	chr17	+	3068	9	FSM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5.02338282435253	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTAGTTGAGATTTTTTT	NA	False	NA	7	True	AATAAA	-20	NA	34811236	34816374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34811749_34812545_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
ES_00023788	chr17	+	1518	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	0	1	0	-1	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCAAGCACTCTGGTTTG	2976	False	NA	76	True	NA	NA	NA	35055994	35058208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ES_00023791	chr17	+	1524	6	NIC	ENSMUSG00000040482.17	novel	1519	7	NA	NA	35	-1	intron_retention	FALSE	canonical	3	143	junction_2	17.7696370249929	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTTGCTGTGTCTGAAT	3074	False	NA	29	True	AATAAA	-18	NA	35056092	35058161	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ES_00023792	chr17	+	1479	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	-101	3	-84	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTTATTGTAACTGC	369	False	NA	NA	False	AAAAAG	-10	NA	35069282	35075345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ES_00023793	chr17	+	1694	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	-84	-3	-84	0	multi-exon	FALSE	canonical	3	52	junction_1	144.013228559046	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	369	False	NA	NA	False	AAAAAG	-13	NA	35069282	35075348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ES_00023794	chr17	+	1651	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	-137	-115	-130	0	multi-exon	TRUE	canonical	3	266	junction_1	84.0802592764794	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTTATTGTAACTGC	323	False	NA	NA	False	AAAAAG	-10	NA	35069236	35075345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ES_00023796	chr17	+	3882	28	FSM	ENSMUSG00000013787.16	ENSMUST00000114033.9	3882	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_1	79.9703820344975	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	6670	False	NA	19	True	AATAAA	-20	NA	35117444	35133027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ES_00023798	chr17	+	4043	27	FSM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	-17	0	0	0	multi-exon	FALSE	canonical	3	188	junction_9	70.6987525311972	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	7155	False	NA	19	True	AATAAA	-20	NA	35117929	35133027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ES_00023799	chr17	+	3937	26	FSM	ENSMUSG00000013787.16	ENSMUST00000097342.10	3934	26	0	-3	0	0	multi-exon	FALSE	canonical	3	123	junction_8	74.3555135817109	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTCTGGTGATTGTT	7155	False	NA	15	True	AATAAA	-16	NA	35117929	35133023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ES_00023803	chr17	+	1356	4	FSM	ENSMUSG00000013787.16	ENSMUST00000124002.2	1359	4	3	0	3	0	multi-exon	FALSE	canonical	3	414	junction_2	9.2736184954957	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGATTGTTTCAGG	1524	False	NA	20	True	AATAAA	-21	NA	35129953	35133028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35130642_35131364_35131444_35131609_35131786_35132615
ES_00023805	chr17	+	2167	18	FSM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	1	78	1	2	multi-exon	TRUE	non_canonical	1	4	junction_1	7.17888098382546	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTATGGCTTTATTTTCA	121	False	NA	NA	False	ATTAAA	-25	NA	35136695	35149334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35136853_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
ES_00023806	chr17	+	3619	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGATTCGGGCTGCGTTC	7984	False	NA	NA	False	NA	NA	NA	35150289	35154929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
ES_00023811	chr17	+	889	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	-16	0	-8	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	227	False	NA	26	True	AATAAA	-20	NA	35201088	35204867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ES_00023813	chr17	+	1449	3	FSM	ENSMUSG00000007050.18	ENSMUST00000172666.2	1066	3	-439	56	-439	0	multi-exon	FALSE	canonical	3	1661	junction_1	51.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGGATGGAAAGATCTG	456	False	NA	-31	True	AATACA	-2	NA	35203144	35204810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35204116_35204224_35204285_35204392
ES_00023815	chr17	+	4048	29	FSM	ENSMUSG00000007029.17	ENSMUST00000173584.8	4048	29	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	416.176527192145	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAGCGCTCTAGA	9538	False	NA	NA	False	NA	NA	NA	35220026	35235006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569
ES_00023823	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
ES_00023828	chr17	+	1041	4	NIC	ENSMUSG00000013766.12	novel	750	4	NA	NA	-37	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	194.82356690663	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTAAGAGAGCTGTCTGT	NA	False	NA	19	True	NA	NA	NA	35295840	35297779	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35295967_35296110_35296183_35296812_35296911_35297034
ES_00023830	chr17	+	1148	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	-6	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295906	35297780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35296183_35296812_35296939_35297034
ES_00023832	chr17	+	884	3	NNC	ENSMUSG00000013766.12	novel	464	4	NA	NA	159	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	201	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTAAGAGAGCTGTCTGT	NA	False	NA	19	True	NA	NA	NA	35296289	35297779	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_35296303_35296812_35296939_35297034
ES_00023837	chr17	+	1527	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	-9	0	-8	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4580	False	NA	14	True	AATAAA	-14	NA	35340449	35343790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35340775_35342028_35342636_35343195
ES_00023840	chr17	+	3787	24	FSM	ENSMUSG00000024392.18	ENSMUST00000166426.9	3787	24	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	208.682200653446	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8488	False	NA	15	True	AATAAA	-16	NA	35354153	35366281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023842	chr17	+	3939	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	168.319388861375	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCCTGGCTCCTTTGCC	8538	False	NA	6	True	AATAAA	-7	NA	35354203	35366272	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023843	chr17	+	3909	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	175.311028167717	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8538	False	NA	15	True	AATAAA	-16	NA	35354203	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ES_00023844	chr17	+	3788	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	147.653539437202	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8538	False	NA	15	True	AATAAA	-16	NA	35354203	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023845	chr17	+	4070	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	276	junction_13	138.874711880889	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTCGAGTACCTTTTCT	8538	False	NA	29	True	AATAAA	-30	NA	35354203	35366295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023846	chr17	+	3926	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	276	junction_13	131.268238351857	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8511	False	NA	15	True	AATAAA	-16	NA	35354176	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023847	chr17	+	3798	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	156.645809781884	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8489	False	NA	15	True	AATAAA	-16	NA	35354154	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ES_00023848	chr17	+	4553	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-751	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	169.610455447836	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	7737	False	NA	15	True	AATAAA	-16	NA	35353402	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ES_00023849	chr17	+	3841	25	NIC	ENSMUSG00000024392.18	novel	3787	24	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_4	172.355233134619	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8539	False	NA	15	True	AATAAA	-16	NA	35354204	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023851	chr17	+	3789	26	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	346	junction_1	122.303229720233	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8802	False	NA	15	True	AATAAA	-16	NA	35354467	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023852	chr17	+	3681	25	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	154.706302168191	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8802	False	NA	15	True	AATAAA	-16	NA	35354467	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023853	chr17	+	3642	25	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	162.957624859962	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8802	False	NA	15	True	AATAAA	-16	NA	35354467	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ES_00023855	chr17	+	3611	24	FSM	ENSMUSG00000024392.18	ENSMUST00000174281.9	3611	24	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	176.22061486662	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTTGGTCTCTTTGCTG	9040	False	NA	NA	False	NA	NA	NA	35354705	35365325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35354981_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221
ES_00023856	chr17	+	3884	26	NIC	ENSMUSG00000024392.18	novel	3611	24	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	181.144388817319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	9086	False	NA	15	True	AATAAA	-16	NA	35354751	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354981_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00023860	chr17	+	2861	10	FSM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	-13	0	-13	0	multi-exon	FALSE	canonical	3	2134	junction_3	141.063246475377	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAACCGTGTCTGTGGTG	NA	False	NA	10	True	NA	NA	NA	35460832	35472656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ES_00023868	chr17	+	311	2	Intergenic	novelGene_1785	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	188	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAAGAAATCTTATTAAT	1498	False	NA	NA	False	AGTAAA	-3	NA	35669167	35763357	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35669232_35763110
ES_00023873	chr17	+	2869	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	-213	0	-213	0	multi-exon	TRUE	canonical	3	44	junction_1	24.5503507751598	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTGGAGATGTTTGAG	4219	False	NA	11	True	AATAAA	-13	NA	35827783	35841893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ES_00023874	chr17	+	2292	3	FSM	ENSMUSG00000040312.15	ENSMUST00000174827.3	2333	3	0	41	0	-41	multi-exon	FALSE	canonical	3	44	junction_1	38	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCAAACAAGATGAAACAAC	4448	False	NA	NA	False	NA	NA	NA	35828012	35831386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35828127_35829113_35829181_35829275
ES_00023875	chr17	+	2748	19	FSM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	38.8088461978693	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGCGATTTCCCCTGA	4508	False	NA	30	True	AATAAA	-32	NA	35828072	35841912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35828127_35828687_35828837_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ES_00023876	chr17	+	3053	14	ISM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	6176	1	-1252	-1	3prime_fragment	FALSE	canonical	3	104	junction_11	16.3876847973639	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGACTGCGATTTCCCCTG	4269	False	NA	29	True	AATAAA	-31	NA	35834248	35841911	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ES_00023878	chr17	+	464	2	FSM	ENSMUSG00000040312.15	ENSMUST00000172893.2	464	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGTAGCGAAGTAACGTA	4140	False	NA	NA	False	NA	NA	NA	35839788	35840330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35839864_35839941
ES_00023891	chr17	+	7341	16	FSM	ENSMUSG00000061607.16	ENSMUST00000082337.13	7335	16	-6	0	-6	0	multi-exon	TRUE	canonical	3	53	junction_5	38.1950549446158	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9223	False	NA	15	True	NA	NA	NA	36152400	36170562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159680_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ES_00023892	chr17	+	7397	16	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	38.3054391264043	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9250	False	NA	15	True	NA	NA	NA	36152427	36170562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ES_00023898	chr17	+	3295	3	FSM	ENSMUSG00000034595.18	ENSMUST00000187690.7	3185	3	-112	2	-112	0	multi-exon	FALSE	canonical	3	80	junction_1	4	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	9774	False	NA	13	True	AATAAA	-20	NA	36177394	36186486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36179678_36184617_36184832_36185688
ES_00023901	chr17	+	568	3	FSM	ENSMUSG00000024422.15	ENSMUST00000174330.2	562	3	-6	0	0	0	multi-exon	FALSE	canonical	3	1011	junction_1	94.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCTACATAGTAAGACCCT	7382	False	NA	NA	False	NA	NA	NA	36198827	36199633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36198890_36198975_36199095_36199246
ES_00023902	chr17	+	490	3	FSM	ENSMUSG00000024422.15	ENSMUST00000173967.2	490	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	505	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCTGCCTTATGTCATT	8727	False	NA	48	True	AATGAA	-38	NA	36200172	36203558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36200253_36200330_36200493_36203310
ES_00023904	chr17	+	4774	20	NIC	ENSMUSG00000039220.17	novel	4255	20	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	16.24875874228	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTGGTATGTTTCACT	NA	False	NA	26	True	AATAAA	-26	NA	36227343	36243173	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ES_00023905	chr17	+	4255	20	FSM	ENSMUSG00000039220.17	ENSMUST00000087211.9	4255	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	32.7700795901305	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	28	True	AATAAA	-28	NA	36227457	36243175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36227491_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ES_00023914	chr17	+	4339	5	FSM	ENSMUSG00000024457.17	ENSMUST00000134325.8	4338	5	-1	0	-1	0	multi-exon	FALSE	canonical	3	108	junction_1	61.6056003947693	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTGCCTGCCTGTTAA	NA	False	NA	NA	False	NA	NA	NA	37148031	37166923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354
ES_00023915	chr17	+	3209	9	NIC	ENSMUSG00000024457.17	novel	3203	10	NA	NA	-17	0	intron_retention	FALSE	canonical	3	63	junction_5	65.2246119191215	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148008	37170272	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ES_00023916	chr17	+	3245	10	FSM	ENSMUSG00000024457.17	ENSMUST00000053434.15	3198	10	-29	-18	-17	0	multi-exon	FALSE	canonical	3	153	junction_5	42.9366458349457	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148008	37170290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ES_00023917	chr17	+	3190	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	-3	0	-1	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148031	37170290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ES_00023920	chr17	+	1042	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	-22	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	112	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269510	37276514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37269688_37275248_37275325_37275725
ES_00023924	chr17	+	1749	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313416	37321524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ES_00023925	chr17	+	1739	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	54	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAGGAGAGAAGTGGAT	NA	False	NA	93	True	NA	NA	NA	37313445	37321581	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ES_00023926	chr17	+	1747	4	FSM	ENSMUSG00000036036.16	ENSMUST00000174524.8	1747	4	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_1	1178.31216388339	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTTGTATTTGTTTTT	NA	False	NA	39	True	AATAAA	-44	NA	37313929	37321527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37314208_37315688_37315796_37316941_37317087_37320310
ES_00023927	chr17	+	2597	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	0	0	0	0	multi-exon	FALSE	canonical	3	2767	junction_1	286	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37314557	37321524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37315796_37316941_37317087_37320310
ES_00023940	chr17	+	1305	2	FSM	ENSMUSG00000045842.10	ENSMUST00000233313.2	735	2	-257	-313	-140	313	multi-exon	FALSE	canonical	3	46	junction_1	0	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGATTGTATAGGGACC	NA	False	NA	NA	False	AATATA	-9	NA	40426108	40427530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_40426541_40426657
ES_00023944	chr17	+	1672	2	FSM	ENSMUSG00000023915.6	ENSMUST00000233482.2	1659	2	-13	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAGAAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	43327445	43349619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_43327984_43348485
ES_00023945	chr17	+	3304	6	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19772	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	56.2899635814414	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	21	True	AATAAA	-17	NA	43347230	43400080	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_43347446_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
ES_00023946	chr17	+	2581	12	FSM	ENSMUSG00000023963.11	ENSMUST00000170988.2	3053	12	-104	576	-104	0	multi-exon	FALSE	canonical	3	74	junction_8	14.3492448040404	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGCATCTGGTTTTGTGCC	NA	False	NA	4	True	AATAAA	-1	NA	43978211	44061746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_43978686_43987721_43987858_43991014_43991190_43993838_43993989_43996076_43996168_44002524_44002630_44012367_44012459_44036405_44036540_44041862_44041959_44042815_44042905_44057415_44057504_44060794
ES_00023952	chr17	+	7556	3	NNC	ENSMUSG00000097119.3	novel	2971	3	NA	NA	-5	889	intron_retention	FALSE	canonical	2	6	junction_2	17.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGGTCAACTTTTGG	NA	False	NA	NA	False	NA	NA	NA	45744772	45754359	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_45745154_45747008_45747151_45747326
ES_00023957	chr17	+	901	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	-51	0	35	0	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGCCAGCTCTAATGG	NA	False	NA	7	True	AATAAA	-16	NA	45874834	45876981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
ES_00023962	chr17	+	436	3	FSM	ENSMUSG00000023952.14	ENSMUST00000167404.8	759	3	323	0	38	0	multi-exon	FALSE	canonical	3	46	junction_2	7.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAACCAACAGGTGAGCCC	NA	False	NA	NA	False	NA	NA	NA	46474281	46475747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46474436_46475119_46475305_46475650
ES_00023963	chr17	+	997	3	FSM	ENSMUSG00000023952.14	ENSMUST00000169918.2	1035	3	38	0	38	0	multi-exon	FALSE	canonical	3	48	junction_2	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTCAACGGGACTCAGT	NA	False	NA	NA	False	NA	NA	NA	46474281	46476114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46474436_46475119_46475760_46475911
ES_00023972	chr17	+	1570	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGATTGAAGTCTAGACC	2645	False	NA	7	True	ATTAAA	-2	NA	46559070	46562927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
ES_00023980	chr17	+	878	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	21	-226	21	0	multi-exon	FALSE	canonical	3	42	junction_1	413.462076723959	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991949	46994028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
ES_00023981	chr17	+	907	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	38	0	21	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991949	46994028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ES_00023982	chr17	+	859	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGTGCTCCTGAATCC	NA	False	NA	5	True	AATAAA	-30	NA	46992049	46994037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
ES_00023989	chr17	+	4542	17	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16054	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_7	10.0179526351446	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTCTCATCTGGGCTA	2039	False	NA	20	True	AATAAA	-25	NA	47507258	47670388	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
ES_00023994	chr17	+	1027	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	-9	0	-5	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7132	False	NA	7	True	NA	NA	NA	47679806	47689606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ES_00023995	chr17	+	3878	3	FSM	ENSMUSG00000034729.17	ENSMUST00000152497.2	3878	3	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_2	8	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTTTGTTTCCTGAA	NA	False	NA	NA	False	NA	NA	NA	47686395	47692342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47686968_47688684_47688775_47689126
ES_00023999	chr17	+	2255	7	FSM	ENSMUSG00000034165.17	ENSMUST00000037333.17	1999	7	-264	8	-187	0	multi-exon	FALSE	canonical	2	40	junction_1	1813.81013951908	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47815788	47910608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47816192_47889633_47889699_47904578_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ES_00024001	chr17	+	2113	7	FSM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1830.80687281744	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47815975	47910608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47816192_47889633_47889699_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ES_00024002	chr17	+	2064	7	FSM	ENSMUSG00000034165.17	ENSMUST00000183044.8	2064	7	0	0	0	0	multi-exon	FALSE	canonical	2	40	junction_1	1825.65854937031	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47816043	47910608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47816192_47889633_47889718_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ES_00024005	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904394	47910614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ES_00024006	chr17	+	1520	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	0	-589	0	0	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47906992	47910608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
ES_00024008	chr17	+	5935	3	FSM	ENSMUSG00000092558.4	ENSMUST00000138638.2	5680	3	-45	-210	-19	40	multi-exon	FALSE	canonical	3	195	junction_2	38	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGGGAAGGGAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	47922487	47935383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47922618_47923887_47924043_47929733
ES_00024010	chr17	+	2061	4	FSM	ENSMUSG00000023984.18	ENSMUST00000130830.2	2168	4	-19	126	-10	-126	multi-exon	FALSE	canonical	3	20	junction_3	105.093609066711	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTACAGCAATAGAGATG	NA	False	NA	NA	False	NA	NA	NA	47922503	47962412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47960874
ES_00024011	chr17	+	2629	8	NIC	ENSMUSG00000023984.18	novel	4807	9	NA	NA	-26	-2805	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	76.6638567955951	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47922487	47991981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_47922618_47923887_47924043_47960874_47960949_47982968_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ES_00024012	chr17	+	1443	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47983644	47991981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
ES_00024015	chr17	+	924	6	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	3622	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	163.966338008751	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48041390	48045407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48041447_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ES_00024016	chr17	+	1607	4	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	4603	1	4601	-1	3prime_fragment	FALSE	canonical	3	283	junction_1	65.5303152916436	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGCCTGTTGAGTCATT	NA	False	NA	15	True	AATAAA	-15	NA	48042369	48045406	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_48043430_48043885_48044037_48044681_48044781_48045109
ES_00024017	chr17	+	665	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5763	-2	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	164.050805138733	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCAGCCTGTTGAGTCAT	NA	False	NA	14	True	AATAAA	-14	NA	48043531	48045405	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48043651_48043885_48044037_48044681_48044781_48045109
ES_00024018	chr17	+	463	3	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	6721	-15	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	200.5	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCCTCCATATTGACCAG	NA	False	NA	1	True	AATAAA	-1	NA	48044489	48045392	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48044571_48044681_48044781_48045109
ES_00024020	chr17	+	2339	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	778	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGTTGTCCTGGCTCTG	NA	False	NA	14	True	AGTAAA	-14	NA	48050605	48103340	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ES_00024022	chr17	+	1334	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	-10	0	-10	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717031	48724282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ES_00024024	chr17	+	1284	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	403.460233480327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717084	48724282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48717401_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ES_00024025	chr17	+	1151	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	404.287818268124	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717082	48724282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48717266_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ES_00024026	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	False	NA	21	True	AATAAA	-29	NA	48717107	48724294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ES_00024029	chr17	+	2881	11	FSM	ENSMUSG00000064120.15	ENSMUST00000024797.16	2646	11	24	-259	-22	256	multi-exon	FALSE	canonical	3	15	junction_10	7.06328535456412	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGCAGAGACTCCTAG	NA	False	NA	NA	False	NA	NA	NA	49735415	49762719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759886_49761057
ES_00024038	chr17	+	395	3	FSM	ENSMUSG00000000708.15	ENSMUST00000172160.2	402	3	7	0	7	0	multi-exon	FALSE	canonical	3	273	junction_2	0.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	53966345	53970702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_53966457_53967056_53967201_53970562
ES_00024039	chr17	+	455	6	FSM	ENSMUSG00000000708.15	ENSMUST00000171072.2	455	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	115.187846581139	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGAACGCCTCAGGAACA	NA	False	NA	NA	False	NA	NA	NA	53966422	53977715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_53966457_53967056_53967201_53970562_53970678_53972680_53972745_53972850_53972936_53977702
ES_00024047	chr17	+	2341	5	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	13.1624465810882	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199355	56205928	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_56199633_56199757_56199861_56202820_56202948_56203140_56203202_56204155
ES_00024048	chr17	+	1144	5	FSM	ENSMUSG00000003206.8	ENSMUST00000003274.8	1154	5	10	0	10	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGGTGTTTTGTTTTGTT	2830	False	NA	NA	False	ATTAAA	-16	NA	56259649	56264022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56259929_56260888_56261019_56261302_56261482_56263184_56263340_56263621
ES_00024058	chr17	+	7690	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	-154	-2001	-154	-12	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTTTTGTAAGAACTG	NA	False	NA	-9	True	NA	NA	NA	56347284	56379277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ES_00024059	chr17	+	2349	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	-117	6	-52	0	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386581	56407592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ES_00024060	chr17	+	2270	16	FSM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_6	104.875926694356	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386633	56407592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ES_00024061	chr17	+	2328	16	FSM	ENSMUSG00000002833.12	ENSMUST00000002911.10	2264	16	-68	4	-64	0	multi-exon	FALSE	canonical	3	66	junction_6	225.638196136105	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386569	56407592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ES_00024063	chr17	+	2331	16	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	148	junction_6	209.929787204092	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386596	56407592	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ES_00024064	chr17	+	3354	12	FSM	ENSMUSG00000002833.12	ENSMUST00000225342.2	3354	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	250.971138573132	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56388423	56407592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56404164_56404234_56404527_56404881_56404986_56405483_56406076_56406176_56406388_56406858_56406986_56407347
ES_00024069	chr17	+	687	2	FSM	ENSMUSG00000002833.12	ENSMUST00000225731.2	687	2	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTATTGGCTTAGGTGC	NA	False	NA	NA	False	TATAAA	-25	NA	56406561	56407607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56406986_56407344
ES_00024075	chr17	+	3483	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_6	505.023262923353	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	36	True	AATAAA	-20	NA	56610399	56630486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ES_00024077	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	36	True	AATAAA	-20	NA	56611347	56630486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ES_00024079	chr17	+	4589	23	FSM	ENSMUSG00000024201.13	ENSMUST00000025036.11	4577	23	-12	0	0	0	multi-exon	FALSE	canonical	3	94	junction_12	23.0595707170123	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4897	False	NA	12	True	ATTAAA	-28	NA	56633061	56709864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00024080	chr17	+	4776	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	0	214	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	29.4305457780414	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCCCAGCCTCGGCCT	4909	False	NA	NA	False	NA	NA	NA	56633073	56710084	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00024081	chr17	+	4545	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_13	35.4617708255333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4923	False	NA	12	True	ATTAAA	-28	NA	56633087	56709864	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703221_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00024082	chr17	+	4475	22	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_9	38.8660704030061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4927	False	NA	12	True	ATTAAA	-28	NA	56633091	56709864	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00024083	chr17	+	4639	24	NNC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_13	44.1044901245819	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4929	False	NA	12	True	ATTAAA	-28	NA	56633093	56709864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701795_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00024084	chr17	+	3403	21	FSM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	-226	-55	-77	0	multi-exon	TRUE	canonical	3	97	junction_18	119.307543768196	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTTAAGTGCCCTTTA	7751	False	NA	15	True	AATAAA	-6	NA	56891747	56913274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912550_56912658_56912796_56912864_56912975
ES_00024085	chr17	+	1755	5	FSM	ENSMUSG00000071054.13	ENSMUST00000182031.2	1755	5	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	23.466731770743	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGAGCACTAAGGAGTGAG	7828	False	NA	31	True	NA	NA	NA	56891824	56903523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651
ES_00024087	chr17	+	3106	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_6	66.4862955803675	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	8062	False	NA	35	True	AATAAA	-26	NA	56892058	56913294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ES_00024089	chr17	+	3628	14	FSM	ENSMUSG00000071054.13	ENSMUST00000182378.8	3628	14	0	0	0	0	multi-exon	FALSE	canonical	3	511	junction_3	50.0930495125567	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTGCCCTTTACTTCAG	NA	False	NA	21	True	AATAAA	-12	NA	56904769	56913280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ES_00024092	chr17	+	423	2	FSM	ENSMUSG00000071054.13	ENSMUST00000183318.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTTAAGTGCCCTTTA	NA	False	NA	15	True	AATAAA	-6	NA	56912739	56913274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56912864_56912975
ES_00024098	chr17	+	560	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	-15	0	11	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCTTGCTGCATGAGAT	NA	False	NA	33	True	AATAAA	-33	NA	57024766	57029152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
ES_00024099	chr17	+	933	3	FSM	ENSMUSG00000002379.8	ENSMUST00000233233.2	918	3	-15	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	33.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCCATGGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	57024782	57028998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57024943_57028034_57028128_57028318
ES_00024101	chr17	+	2755	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	-6	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	26.7830792354676	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9244	False	NA	12	True	NA	NA	NA	57071777	57077093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ES_00024102	chr17	+	2184	10	FSM	ENSMUSG00000007603.10	ENSMUST00000232684.2	2184	10	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	34.159032570798	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTCTCCTTGTG	NA	False	NA	11	True	NA	NA	NA	57072733	57077092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ES_00024105	chr17	+	2328	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1723	-1	1697	1	3prime_fragment	TRUE	canonical	3	15	junction_6	15.5260378474249	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTCGCACCCCGAGGTA	NA	False	NA	17	True	ATTAAA	-17	NA	57184199	57195905	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
ES_00024106	chr17	+	685	4	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8494	1	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	29.6797723860694	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTCGCACCCCGAGGTA	NA	False	NA	17	True	ATTAAA	-17	NA	57190996	57195905	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_57191026_57192083_57192224_57193440_57193688_57195636
ES_00024107	chr17	+	3643	4	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	8746	-2242	8720	2242	3prime_fragment	FALSE	canonical	3	55	junction_1	8.99382504215469	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57191222	57198146	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_57191969_57192083_57192224_57193440_57193688_57195636
ES_00024112	chr17	+	749	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	-13	0	-13	0	multi-exon	FALSE	canonical	3	32	junction_1	221	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGCAAGCAAAGAAAGA	354	False	NA	NA	False	NA	NA	NA	57304325	57306311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57304568_57305670_57305796_57305929
ES_00024114	chr17	+	1583	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163763.2	868	3	-61	-654	7	163	multi-exon	FALSE	canonical	3	202	junction_2	10.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGGGAACCCCTCACA	1533	False	NA	NA	False	AAGAAA	-14	NA	57369237	57373081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57369767_57370636_57370699_57372089
ES_00024115	chr17	+	1044	4	NIC	ENSMUSG00000044279.16	novel	778	5	NA	NA	7	0	intron_retention	FALSE	canonical	3	51	junction_3	76.6130247122221	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1533	False	NA	NA	False	AATAAA	-30	NA	57369237	57372917	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_57369767_57370636_57370699_57372089_57372234_57372608
ES_00024116	chr17	+	797	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	-19	0	-19	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1559	False	NA	NA	False	AATAAA	-30	NA	57369263	57372917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
ES_00024119	chr17	+	2224	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCGTGTGGAATAAATG	NA	False	NA	NA	False	GATAAA	-13	NA	57556481	57570665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
ES_00024122	chr17	+	2763	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	0	14	combination_of_known_junctions	FALSE	canonical	3	71	junction_10	30.9070689904469	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAGCAACCCTGCCATTT	NA	False	NA	18	True	AATAAA	-29	NA	64171009	64446206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ES_00024123	chr17	+	6074	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-71	2916	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	41.0219754416557	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTTACTATACCATTA	NA	False	NA	NA	False	AATAAA	-17	NA	64184989	64449407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_64185138_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ES_00024125	chr17	+	3609	18	FSM	ENSMUSG00000000127.16	ENSMUST00000000129.14	2973	18	0	-636	0	603	multi-exon	FALSE	canonical	3	115	junction_9	21.9155346145023	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTTTTCCACTAAAGC	NA	False	NA	NA	False	NA	NA	NA	64203016	64447094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ES_00024132	chr17	+	4421	20	FSM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	-575	4	0	0	multi-exon	FALSE	canonical	3	102	junction_2	67.7698974676079	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGGGAGAAAGGCGT	NA	False	NA	31	True	AATAAA	-28	NA	66089774	66148917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ES_00024133	chr17	+	3795	20	FSM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	-11	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	42.2814078706415	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGGGAGAAAGGCGT	NA	False	NA	31	True	AATAAA	-28	NA	66090349	66148917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66090445_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ES_00024137	chr17	+	1831	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418639	66426442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ES_00024140	chr17	+	4141	27	FSM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_22	18.327114778237	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATGATCAAGTATGAGA	NA	False	NA	28	True	ATTAAA	-23	NA	66430607	66459169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
ES_00024145	chr17	+	9601	64	NNC	ENSMUSG00000032796.9	novel	9526	63	NA	NA	-57	45641	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_63	47.337644720769	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGATCCCCTAAACAGGTC	NA	False	NA	NA	False	NA	NA	NA	68004196	68175283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_68004412_68023688_68023860_68024156_68024270_68044468_68044712_68045705_68045886_68049019_68049110_68050269_68050388_68052040_68052220_68052844_68052951_68053742_68053904_68055038_68055180_68057511_68057686_68059376_68059479_68059772_68059985_68060745_68060858_68063661_68063773_68068597_68068726_68070765_68070853_68071624_68071837_68073947_68074055_68074379_68074561_68075294_68075432_68076374_68076612_68077950_68078095_68079656_68079837_68080681_68080868_68081458_68081587_68082765_68082887_68083902_68084041_68086043_68086166_68087523_68087611_68087873_68088068_68089014_68089158_68090988_68091079_68092045_68092158_68092992_68093156_68097813_68098022_68098204_68098322_68098439_68098604_68101189_68101326_68102194_68102289_68103691_68103809_68105521_68105705_68105977_68106133_68107753_68107898_68109890_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283_68129633_68175255
ES_00024146	chr17	+	321	2	Intergenic	novelGene_1859	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAACATCAGGAGACCATA	NA	False	NA	NA	False	NA	NA	NA	69258412	69324286	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_69258474_69324026
ES_00024148	chr17	+	3966	13	FSM	ENSMUSG00000024044.20	ENSMUST00000225316.2	3966	13	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_11	6.11180551610297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAAGCTAGGCCCTTA	NA	False	NA	NA	False	NA	NA	NA	69463772	69579843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605
ES_00024149	chr17	+	3803	19	NIC	ENSMUSG00000024044.20	novel	4047	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_18	11.188066835078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCGTCTTCCATGTGAA	NA	False	NA	20	True	AATAAA	-21	NA	69463772	69596984	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
ES_00024150	chr17	+	3853	20	FSM	ENSMUSG00000024044.20	ENSMUST00000225977.2	3188	20	0	-665	0	0	multi-exon	TRUE	canonical	3	30	junction_19	11.3154222706638	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCGTCTTCCATGTGAA	NA	False	NA	20	True	AATAAA	-21	NA	69463839	69596984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
ES_00024152	chr17	+	4434	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	-240	-451	-240	2	multi-exon	FALSE	canonical	3	85	junction_1	58	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATAGGCTATCTTTCCATC	NA	False	NA	NA	False	AAGAAA	-15	NA	69689804	69698196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_69690265_69692415_69692500_69694306
ES_00024153	chr17	+	4358	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112676.4	4358	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	80	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATAGGCTATCTTTCCA	NA	False	NA	NA	False	AAGAAA	-13	NA	69690834	69698194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_69691221_69692415_69692500_69694306
ES_00024168	chr17	+	2198	15	NIC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.6679761390347	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCACTGTGTGTGTCTTCT	NA	False	NA	NA	False	ATTAAA	-24	NA	72089655	72157159	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_72089846_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886
ES_00024169	chr17	+	4119	16	NIC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	49	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	17.6022725805505	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTGTGTCTTTTACCCT	NA	False	NA	6	True	AATAAA	-19	NA	72089660	72165348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_72089846_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886_72156960_72163222
ES_00024171	chr17	+	2742	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	-32	-291	-32	291	multi-exon	FALSE	canonical	3	101	junction_1	120.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGCCGGAAAACACTAAAT	1573	False	NA	NA	False	AAAACA	-2	NA	73144275	73157723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_73144704_73153273_73153439_73155574
ES_00024176	chr17	+	4440	6	NIC	ENSMUSG00000054469.15	novel	4467	6	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	15.992498241363	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGATTCTGTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	73414994	73550363	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_73415152_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
ES_00024179	chr17	+	2345	17	FSM	ENSMUSG00000024068.9	ENSMUST00000224711.2	2066	17	-279	0	-279	0	multi-exon	FALSE	canonical	3	146	junction_1	31.4552633711753	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTCAAGGCCTTCTT	9562	False	NA	16	True	AATAAA	-20	NA	74645702	74695481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_74646441_74658947_74659032_74663080_74663165_74666248_74666345_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ES_00024189	chr17	+	15620	73	NIC	ENSMUSG00000024073.17	novel	14649	73	NA	NA	0	10	combination_of_known_junctions	TRUE	canonical	2	12	junction_13	10.0457191761184	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATAGTTGCCATGGTG	NA	False	NA	27	True	AATAAA	-33	NA	74835462	75010361	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159_74887558_74892947_74893098_74896589_74896816_74900083_74900245_74901358_74901449_74901864_74901997_74903851_74904034_74905033_74905168_74905977_74906140_74906231_74906364_74906864_74906963_74909959_74910108_74911488_74911623_74912983_74913119_74915091_74915280_74916053_74916384_74916631_74916732_74917989_74918205_74918342_74918552_74918993_74919341_74920371_74920592_74921293_74921428_74922214_74922353_74925430_74925559_74926701_74926834_74929030_74929247_74929903_74930088_74930745_74930902_74932100_74932235_74933956_74934111_74936399_74936517_74937954_74938110_74938605_74938733_74941790_74941902_74942757_74942892_74945337_74945466_74946774_74947338_74948627_74948804_74949255_74949353_74949486_74949682_74950289_74950491_74953463_74953744_74954198_74954456_74954711_74954821_74955112_74955335_74956617_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ES_00024191	chr17	+	1345	2	FSM	ENSMUSG00000024073.17	ENSMUST00000182257.2	2707	2	312	1050	312	-606	multi-exon	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAATCTGGTAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	74864089	74868490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_74865090_74868145
ES_00024196	chr17	+	658	4	FSM	ENSMUSG00000024078.8	ENSMUST00000234751.2	644	4	-14	0	-14	0	multi-exon	FALSE	canonical	3	6	junction_3	63.6605581711837	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTGAGGGTTAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	75024742	75030668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75030582
ES_00024197	chr17	+	2838	20	FSM	ENSMUSG00000024078.8	ENSMUST00000024882.8	2838	20	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	16.0728948897983	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGATGTTCTCA	NA	False	NA	10	True	AATAAA	-21	NA	75024726	75170565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
ES_00024198	chr17	+	2651	20	FSM	ENSMUSG00000024078.8	ENSMUST00000234568.2	2651	20	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_19	29.4919116570221	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	False	NA	6	True	AATAAA	-17	NA	75024906	75170561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170331
ES_00024200	chr17	+	1677	3	FSM	ENSMUSG00000001870.17	ENSMUST00000135750.2	3277	3	863	737	863	8	multi-exon	FALSE	canonical	3	25	junction_2	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCTATGATACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	75692067	75698770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_75692191_75696424_75696575_75697366
ES_00024205	chr17	+	602	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ES_00024206	chr17	+	770	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	-17	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ES_00024213	chr17	+	1497	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	-24	0	-24	0	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359592	79397650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ES_00024218	chr17	+	1123	3	NNC	ENSMUSG00000055760.13	novel	1134	3	NA	NA	38	23	at_least_one_novel_splicesite	FALSE	canonical	3	145	junction_1	120	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTTTTTCCTGGGTGGT	NA	False	NA	62	True	NA	NA	NA	80531907	80535949	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_80532104_80533049_80533194_80535166
ES_00024219	chr17	+	656	5	FSM	ENSMUSG00000045257.11	ENSMUST00000227729.2	656	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTGAATTATGTATTG	NA	False	NA	15	True	AATAAA	-18	NA	80597631	80604905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
ES_00024225	chr17	+	5052	21	FSM	ENSMUSG00000032624.17	ENSMUST00000049503.10	5052	21	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	95.8126296476618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAATGTTTCCTTTGCCT	NA	False	NA	10	True	GATAAA	-13	NA	83658410	83787784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ES_00024228	chr17	+	1728	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112349.9	1728	14	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_11	233.064406873892	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTGTTTTTTTTTTT	NA	False	NA	12	True	AATAAA	-17	NA	84013591	84100304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096346_84096472_84099081_84099231_84099970
ES_00024229	chr17	+	2665	16	FSM	ENSMUSG00000055817.19	ENSMUST00000112352.10	2674	16	0	9	0	-9	multi-exon	FALSE	canonical	3	32	junction_15	360.357748170713	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCAGGATTTTCCTGCCT	NA	False	NA	NA	False	AATAAA	-5	NA	84013591	84112843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879
ES_00024234	chr17	+	3333	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112304.10	3323	6	-10	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	340.544857544494	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGGCATACTTGTGGA	NA	False	NA	19	True	AATAAA	-31	NA	85265426	85324625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
ES_00024257	chr17	+	1352	1	FSM	ENSMUSG00000043346.10	ENSMUST00000057074.10	747	1	-37	-568	-37	568	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATAGC	NA	False	NA	NA	False	ATTAAA	-31	NA	91544201	91545553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_91544200_91545600
ES_00024258	chr17	+	404	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	-22	-69	-22	69	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAAGAGTAACTCACTGT	NA	False	NA	NA	False	NA	NA	NA	94915590	94915994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_94915600_94916000
ES_00024260	chr17	+	2356	2	Intergenic	novelGene_1881	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	60	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	94990823	94995298	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_94992351_94994469
ES_00024262	chr17	+	1298	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	-23	0	-23	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057504	95082557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ES_00024264	chr17	+	1168	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	41	junction_2	31.418296818892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057539	95082557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_95057661_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ES_00024265	chr17	+	472	5	NNC	ENSMUSG00000098090.9	novel	799	3	NA	NA	0	19037	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGAATGAATTAGTG	NA	False	NA	30	True	AATAAA	-35	NA	95057539	95101597	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
ES_00024266	chr17	+	358	4	NNC	ENSMUSG00000098090.9	novel	799	3	NA	NA	0	19018	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_3	26.8493740874697	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057539	95101578	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95101454
ES_00024267	chr17	+	1153	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	9	3	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	47.0790558528949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTCCCCTCCCATTTC	NA	False	NA	NA	False	AATAAA	-17	NA	95057548	95082563	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ES_00024268	chr17	+	453	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-11	19018	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	73.1624903895432	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057554	95101578	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092951_95101454
ES_00024269	chr17	+	1059	8	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	36.7106724180824	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057541	95082557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_95057661_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ES_00024270	chr17	+	1102	9	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	51.4192327830745	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTCCCCTCCCATTTC	NA	False	NA	NA	False	AATAAA	-17	NA	95057557	95082563	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ES_00024271	chr17	+	404	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-19	19018	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	77.6831169989121	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057508	95101578	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95063861_95063952_95092912_95092951_95101454
ES_00024273	chr17	-	720	1	FSM	ENSMUSG00000068141.6	ENSMUST00000089221.3	720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGCCCTTTTTACCGTG	NA	False	NA	NA	False	NA	NA	NA	3095008	3094288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3094300_3095000
ES_00024275	chr17	-	1225	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	0	-15	0	15	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATCCGGCCCTATCA	NA	False	NA	NA	False	TTTAAA	-13	NA	3165070	3162049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
ES_00024276	chr17	-	1936	1	FSM	ENSMUSG00000116838.2	ENSMUST00000231500.2	1936	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGTGTGGACCCAGTGT	NA	False	NA	NA	False	AAGAAA	-18	NA	3364460	3362524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3362500_3364500
ES_00024277	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608056	3569530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
ES_00024278	chr17	-	824	6	NIC	ENSMUSG00000036983.8	novel	1402	7	NA	NA	97	-282	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	33.0611554547024	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCGCCTGCCAGGACACC	NA	False	NA	NA	False	AAAAAG	-44	NA	3607912	3569812	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_3570071_3571919_3572048_3586352_3586473_3595857_3595967_3605206_3605359_3607855
ES_00024279	chr17	-	703	1	FSM	ENSMUSG00000081783.3	ENSMUST00000122283.3	1345	1	522	120	522	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	3383	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGGGCATAGAGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	5161863	5161160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_5161200_5161900
ES_00024280	chr17	-	948	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	3468	False	NA	-8	True	NA	NA	NA	5490518	5461144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
ES_00024281	chr17	-	669	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	0	111	0	-111	multi-exon	FALSE	canonical	3	677	junction_2	16.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAATGTGTTAGATACA	3455	False	NA	NA	False	AATAAA	-23	NA	5490531	5483410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_5483855_5489806_5489908_5490407
ES_00024282	chr17	-	1917	2	Antisense	novelGene_ENSMUSG00000034265.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCGTGGTGTTGTGTCTTT	NA	False	NA	1	True	NA	NA	NA	5577543	5572998	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_5574721_5577348
ES_00024283	chr17	-	441	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	NA	False	NA	NA	False	GGGGCT	-44	NA	5866915	5866474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_5866500_5866900
ES_00024284	chr17	-	5635	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	14	-1642	0	1642	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTCTACTTTTTTTGAC	2607	False	NA	5	True	NA	NA	NA	6130002	6090828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ES_00024285	chr17	-	688	4	FSM	ENSMUSG00000015659.13	ENSMUST00000153325.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	35.4902177445498	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGGTAGGGAGCAGAGCT	6184	False	NA	NA	False	NA	NA	NA	6100330	6094178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6094526_6095998_6096064_6099105_6099289_6100237
ES_00024286	chr17	-	2033	16	FSM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	20.0614611188274	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2607	False	NA	-19	True	AATATA	-15	NA	6130002	6094340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ES_00024287	chr17	-	1895	16	NIC	ENSMUSG00000015659.13	novel	4007	17	NA	NA	13	-101	combination_of_known_splicesites	FALSE	canonical	3	9	junction_8	22.4376667434225	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTACTCTACAGTTCATC	2620	False	NA	-120	True	NA	NA	NA	6129989	6094441	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ES_00024290	chr17	-	972	2	Genic_Genomic	ENSMUSG00000058542.4	novel	552	1	NA	NA	-212	10795	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCTAGCTGCCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	6182892	6171333	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_6171369_6181955
ES_00024291	chr17	-	1154	1	FSM	ENSMUSG00000051639.4	ENSMUST00000061073.2	957	1	-67	-130	-67	130	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-30	NA	6172506	6171352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6171400_6172500
ES_00024293	chr17	-	758	6	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-30	9648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2942.06897267892	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAGTGGTGGCACACGCC	NA	False	NA	NA	False	NA	NA	NA	6367723	6346966	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6347006_6360818_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ES_00024294	chr17	-	758	6	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-30	9649	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2942.06897267892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGGTGGCACACGCCT	NA	False	NA	NA	False	NA	NA	NA	6367723	6346965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6347005_6360818_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ES_00024295	chr17	-	887	6	Fusion	ENSMUSG00000092074.3_ENSMUSG00000118494.2	novel	3321	5	NA	NA	82	9648	multi-exon	FALSE	non_canonical	0	0	junction_1	3402.14970864011	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAGTGGTGGCACACGCC	NA	False	NA	NA	False	NA	NA	NA	6371929	6346966	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_6347005_6360818_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6371724
ES_00024296	chr17	-	3321	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	0	0	0	0	multi-exon	FALSE	canonical	3	2579	junction_4	2048.76394138027	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6367775	6358268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ES_00024297	chr17	-	488	1	FSM	ENSMUSG00000094843.3	ENSMUST00000178232.3	618	1	185	-55	185	55	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACACTGCTTCTTGTTCT	NA	False	NA	NA	False	AATACA	-15	NA	6374732	6374244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6374200_6374700
ES_00024298	chr17	-	463	1	FSM	ENSMUSG00000116921.2	ENSMUST00000232389.2	838	1	233	142	233	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGAAGCTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	6405568	6405105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6405100_6405600
ES_00024299	chr17	-	2426	9	FSM	ENSMUSG00000096780.8	ENSMUST00000180035.8	2426	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	335.740762158842	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACTTTTTGTTGCTGTG	NA	False	NA	2	True	AATAAA	-23	NA	6717144	6705922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6706243_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6716016_6716181_6716313_6716836
ES_00024300	chr17	-	5157	10	ISM	ENSMUSG00000096780.8	ENSMUST00000188746.7	1626	16	16055	-2656	-1222	-4	3prime_fragment	FALSE	canonical	0	0	junction_3	296.984141406429	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGAGACTTTTTGTTGC	NA	False	NA	-2	True	AATAAA	-45	NA	6718366	6705926	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836
ES_00024301	chr17	-	4498	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10106	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	290.843486421391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGAGACTTTTTGTTGC	2362	False	NA	-2	True	AATAAA	-45	NA	6744527	6705926	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ES_00024303	chr17	-	1179	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-9502	-15007	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	312.644666514559	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2966	False	NA	NA	False	AATAAA	-15	NA	6743923	6723807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6743712
ES_00024304	chr17	-	769	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10128	-15007	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_1	242.285286387762	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2340	False	NA	NA	False	AATAAA	-15	NA	6744549	6723807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ES_00024305	chr17	-	1108	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10134	-15007	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2334	False	NA	NA	False	AATAAA	-15	NA	6744555	6723807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ES_00024306	chr17	-	8087	11	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	3159	6	NA	NA	-21236	4357	multi-exon	FALSE	canonical	2	12	junction_2	14.4461067419565	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTGCCAAGTTTG	9928	False	NA	NA	False	AATAAA	-25	NA	6817348	6774832	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_6779304_6781304_6783818_6785940_6786085_6791132_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281
ES_00024307	chr17	-	3155	6	FSM	ENSMUSG00000116560.2	ENSMUST00000231996.2	3159	6	4	0	4	0	multi-exon	FALSE	canonical	2	12	junction_2	9.13454979733539	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAGACAGATGCAGGAG	NA	False	NA	NA	False	NA	NA	NA	6796108	6779189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6779304_6781304_6783818_6785940_6786085_6791132_6791227_6792929_6793075_6795963
ES_00024308	chr17	-	569	3	NNC	ENSMUSG00000093880.4	novel	1386	16	NA	NA	25561	3665	at_least_one_novel_splicesite	FALSE	canonical	3	213	junction_1	260.5	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGACCGAAATCTGAT	NA	False	NA	15	True	AATAAA	-36	NA	6881628	6877486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6877820_6881151_6881219_6881459
ES_00024309	chr17	-	617	1	Intergenic	novelGene_1683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATGAGACTTTTTGTT	NA	False	NA	-4	True	AATAAA	-43	NA	6878122	6877505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6877500_6878100
ES_00024310	chr17	-	329	3	NNC	ENSMUSG00000093880.4	novel	1386	16	NA	NA	25637	895	at_least_one_novel_splicesite	FALSE	canonical	3	500	junction_1	117	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAAGCAAAGGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	6881552	6880256	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6880426_6881151_6881219_6881459
ES_00024311	chr17	-	296	4	ISM	ENSMUSG00000093880.4	ENSMUST00000115772.6	1386	16	20624	1482	20624	-1482	internal_fragment	FALSE	canonical	3	13	junction_2	140.785889444456	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCCTTGTCTCGGAGAG	NA	False	NA	NA	False	NA	NA	NA	6886565	6882633	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_6882716_6884475_6884528_6884933_6885037_6886506
ES_00024312	chr17	-	973	9	NNC	ENSMUSG00000093880.4	novel	1386	16	NA	NA	10	-6534	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	188.125913619044	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAACACAACGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	6907179	6887685	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6887779_6887944_6888076_6888599_6888797_6891044_6891126_6891812_6891924_6896174_6896297_6897764_6897853_6899827_6899884_6907085
ES_00024313	chr17	-	521	4	ISM	ENSMUSG00000093880.4	ENSMUST00000115772.6	1386	16	0	14872	0	-14872	5prime_fragment	FALSE	canonical	3	212	junction_1	178.036201062843	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCTGTCATTTGTCTCG	NA	False	NA	NA	False	NA	NA	NA	6907189	6896023	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_6896297_6897764_6897853_6899827_6899884_6907085
ES_00024314	chr17	-	771	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	5415	junction_4	1216.82506959711	466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923299	6916336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
ES_00024315	chr17	-	3173	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	-9	0	9	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATTGAGATCAGAACAT	NA	False	NA	10	True	AATAAA	-29	NA	7050183	7005430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ES_00024317	chr17	-	2111	8	FSM	ENSMUSG00000023806.11	ENSMUST00000231794.2	2243	8	13	119	13	-119	multi-exon	TRUE	canonical	2	7	junction_1	24.1119836409624	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCCCGTTGACTCTGTA	NA	False	NA	NA	False	NA	NA	NA	7216068	7171930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
ES_00024318	chr17	-	2360	4	NNC	ENSMUSG00000052031.9	novel	2312	4	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	130	junction_3	168.048273487776	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228603	7222409	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_7224424_7225052_7225168_7228135_7228189_7228425
ES_00024320	chr17	-	2543	3	ISM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	6	0	6	0	intron_retention	FALSE	canonical	3	411	junction_2	60	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228549	7222409	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_7224424_7225052_7225168_7228135
ES_00024322	chr17	-	1533	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	16	244	16	-244	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATGCATGTATGACCTG	NA	False	NA	NA	False	ATTAAA	-14	NA	8366913	8347151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ES_00024323	chr17	-	608	1	FSM	ENSMUSG00000116704.2	ENSMUST00000231828.2	608	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACACATGATATTTGTA	NA	False	NA	NA	False	NA	NA	NA	8603492	8602884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_8602900_8603500
ES_00024325	chr17	-	3492	1	FSM	ENSMUSG00000046173.4	ENSMUST00000057190.4	3223	1	-311	42	-311	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTGTTTTTCACAAATA	NA	False	NA	NA	False	NA	NA	NA	9888957	9885465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_9885500_9889000
ES_00024326	chr17	-	580	3	FSM	ENSMUSG00000117341.2	ENSMUST00000233459.2	585	3	5	0	-3	0	multi-exon	FALSE	canonical	3	10	junction_1	0.5	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTCTGGCCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	9945285	9924270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_9924688_9941118_9941218_9945221
ES_00024327	chr17	-	8569	8	FSM	ENSMUSG00000062078.16	ENSMUST00000233645.2	8547	8	0	-22	0	22	multi-exon	FALSE	canonical	3	1001	junction_1	100.591718732463	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTTGCAGGACTGAGT	NA	False	NA	3	True	ATTAAA	-43	NA	10538309	10421507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_10428561_10432287_10432363_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ES_00024328	chr17	-	5775	8	FSM	ENSMUSG00000062078.16	ENSMUST00000097414.11	5832	8	57	0	57	0	multi-exon	FALSE	canonical	3	312	junction_2	310.198882878026	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGACTATGTTTGTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	10538726	10425479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_10428561_10432287_10433124_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ES_00024329	chr17	-	5443	7	FSM	ENSMUSG00000062078.16	ENSMUST00000233828.2	5428	7	0	-15	0	5	multi-exon	FALSE	canonical	3	312	junction_1	334.742396810177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCCAGAGTTTATGTT	NA	False	NA	NA	False	AATAAA	-26	NA	10538290	10429102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_10433124_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ES_00024330	chr17	-	6742	7	FSM	ENSMUSG00000062078.16	ENSMUST00000042296.9	6737	7	0	-5	0	5	multi-exon	FALSE	canonical	3	19	junction_1	441.583388375162	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCCAGAGTTTATGTT	NA	False	NA	NA	False	AATAAA	-26	NA	10538309	10429102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_10434404_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ES_00024331	chr17	-	5532	8	NNC	ENSMUSG00000062078.16	novel	6737	7	NA	NA	132	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	584.849605646178	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTGGCCCAGAGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	10538158	10429107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_10433124_10434153_10434404_10435088_10435365_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ES_00024333	chr17	-	5238	26	FSM	ENSMUSG00000014426.10	ENSMUST00000233755.2	5237	26	0	-1	0	1	multi-exon	FALSE	canonical	2	41	junction_10	48.1782357501808	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGTCTGTTACTGGCTC	NA	False	NA	2	True	AATAAA	-24	NA	12537635	12446506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12496807_12496999_12537384
ES_00024338	chr17	-	8960	48	FSM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	-51	-22	-51	22	multi-exon	TRUE	canonical	3	127	junction_32	38.5858675109275	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCCCCCTGATTATGATA	5567	False	NA	22	True	AATAAA	-41	NA	12988602	12901270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228_12919420_12920106_12920244_12920819_12920918_12921083_12921215_12922247_12922464_12923158_12923247_12923519_12923696_12923783_12923928_12924574_12924740_12928265_12928462_12929523_12929629_12930905_12931008_12932847_12933028_12933759_12933929_12934264_12934381_12934759_12934935_12935455_12935604_12936159_12936298_12937538_12937683_12938699_12938838_12941014_12941180_12944201_12944306_12945076_12945243_12945557_12945721_12950294_12950401_12952683_12952814_12954853_12954987_12958173_12958273_12959168_12959294_12967530_12967671_12988286
ES_00024342	chr17	-	1219	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	0	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135232	13130235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ES_00024345	chr17	-	2259	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	0	-9	0	9	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGTATGCATGTACTATG	NA	False	NA	NA	False	AATAAA	-28	NA	13179634	13161767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ES_00024346	chr17	-	1800	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGCAGGGCCCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	13179258	13162329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
ES_00024348	chr17	-	2054	8	FSM	ENSMUSG00000060475.14	ENSMUST00000007007.14	2051	8	0	-3	0	0	multi-exon	FALSE	canonical	3	178	junction_3	195.055094257798	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTTTTCCTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	13211146	13185682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ES_00024349	chr17	-	2060	8	FSM	ENSMUSG00000060475.14	ENSMUST00000159551.8	2060	8	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	218.990354833733	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTTTTCCTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	13211384	13185682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ES_00024350	chr17	-	4396	8	NNC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	0	823	intron_retention	FALSE	canonical	3	65	junction_2	221.334265632001	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTTAAGAGCACTGAC	NA	False	NA	NA	False	AGTAAA	-30	NA	13211079	13184859	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13186939_13188291_13188447_13192596_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ES_00024351	chr17	-	3693	8	NNC	ENSMUSG00000060475.14	novel	2060	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	65	junction_2	238.239889392938	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTGTTTTTTCCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	13211433	13185684	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13186939_13188291_13188447_13192596_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ES_00024352	chr17	-	3743	6	FSM	ENSMUSG00000060475.14	ENSMUST00000160781.8	2442	6	0	-1301	0	434	multi-exon	FALSE	canonical	3	121	junction_5	236.32384560175	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCTCTAGCACCCGGCG	NA	False	NA	NA	False	NA	NA	NA	13211433	13191137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ES_00024353	chr17	-	4258	7	NIC	ENSMUSG00000060475.14	novel	2442	6	NA	NA	1	281	intron_retention	FALSE	canonical	3	8	junction_6	268.473876237935	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGGACATCACATTGAG	NA	False	NA	NA	False	NA	NA	NA	13213051	13191290	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195_13212000_13212949
ES_00024354	chr17	-	3187	6	FSM	ENSMUSG00000060475.14	ENSMUST00000159986.8	3187	6	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	176.193756983612	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGTGATTCCTTCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	13211079	13191571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ES_00024355	chr17	-	4067	6	FSM	ENSMUSG00000060475.14	ENSMUST00000233867.2	446	6	-20	-3601	-20	869	multi-exon	FALSE	canonical	3	14	junction_5	266.82773469038	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGACATGGCTAGATGA	NA	False	NA	NA	False	NA	NA	NA	13213076	13190702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
ES_00024357	chr17	-	249	1	NIC	ENSMUSG00000117042.2	novel	796	3	NA	NA	17231	-304	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTCTTGACGACCCTAC	NA	False	NA	NA	False	NA	NA	NA	13703367	13703118	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_13703100_13703400
ES_00024359	chr17	-	2809	4	FSM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	266	175	266	-175	multi-exon	FALSE	canonical	3	62	junction_2	0.816496580927726	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTCTTGTCTCTTCCTTC	NA	False	NA	0	True	AATAAA	-28	NA	14424090	14415488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_14417574_14418078_14418355_14419407_14419541_14423775
ES_00024360	chr17	-	414	2	FSM	ENSMUSG00000046991.13	ENSMUST00000228221.2	413	2	0	-1	0	1	multi-exon	FALSE	canonical	3	13	junction_1	0	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCTCAGTTCAGTTGC	NA	False	NA	NA	False	NA	NA	NA	15163339	15159571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15159843_15163196
ES_00024362	chr17	-	1962	12	NNC	ENSMUSG00000023883.14	novel	1663	12	NA	NA	-313	-3	at_least_one_novel_splicesite	FALSE	canonical	3	223	junction_9	206.573981704752	99	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAATTAACGATGACCTT	NA	False	NA	-27	True	AATAAA	-8	NA	15181848	15165278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176324_15176995_15177127_15179680_15179788_15181372
ES_00024363	chr17	-	712	4	FSM	ENSMUSG00000116780.2	ENSMUST00000097399.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	6.64997911442	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCAGCATTTTCACCCC	NA	False	NA	NA	False	NA	NA	NA	15199052	15184503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15184618_15187807_15187964_15190648_15190856_15198817
ES_00024365	chr17	-	752	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	7.25718035235908	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCCTTCAAAATAAATGA	8865	False	NA	NA	False	NA	NA	NA	15230444	15216077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
ES_00024366	chr17	-	515	3	FSM	ENSMUSG00000079707.11	ENSMUST00000097398.12	517	3	0	2	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGCCTCGTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	15261701	15247415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15247580_15253608_15253816_15261557
ES_00024368	chr17	-	1187	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	0	-8	0	4	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	0	True	GATAAA	-20	NA	15461045	15451838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
ES_00024369	chr17	-	1204	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	-8	4	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	0	True	GATAAA	-20	NA	15461053	15451838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
ES_00024370	chr17	-	1116	5	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	16.5151445649137	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461052	15451842	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15461036
ES_00024371	chr17	-	3576	11	FSM	ENSMUSG00000014773.14	ENSMUST00000014917.8	3581	11	0	5	0	-5	multi-exon	FALSE	canonical	2	3	junction_7	1.34536240470737	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAACCTCAGGTGTGACTT	NA	False	NA	NA	False	AATAAA	-11	NA	15596238	15587620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15588298_15588395_15588514_15588628_15589428_15590468_15590686_15590792_15590963_15591084_15591216_15591867_15591929_15593698_15593957_15594151_15594213_15594927_15595222_15595448
ES_00024372	chr17	-	2160	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	-402	0	402	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTTGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	15718560	15694880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ES_00024373	chr17	-	2032	2	FSM	ENSMUSG00000014769.11	ENSMUST00000231696.2	1762	2	460	-730	460	32	multi-exon	FALSE	canonical	3	5078	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGACTTTACCCAAGTC	7762	False	NA	NA	False	NA	NA	NA	15698391	15695250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15696468_15697576
ES_00024377	chr17	-	5593	3	FSM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	0	105	0	-105	multi-exon	FALSE	canonical	3	46	junction_1	3.5	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTTAATGGCTAAGCAT	NA	False	NA	NA	False	NA	NA	NA	16046848	16023554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_16028064_16040931_16041441_16046273
ES_00024380	chr17	-	212	1	Intergenic	novelGene_1705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTTACTTCTATCACAC	NA	False	NA	NA	False	NA	NA	NA	17124096	17123884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_17123900_17124100
ES_00024381	chr17	-	1081	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	-77	-319	-77	319	mono-exon	FALSE	NA	NA	NA	NA	NA	278	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAACTGTACTAAAC	NA	False	NA	NA	False	NA	NA	NA	17566479	17565398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_17565400_17566500
ES_00024384	chr17	-	12052	18	FSM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	4.93557105021248	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTATGGATTCATCTGA	9893	False	NA	NA	False	AATAAA	-17	NA	17845309	17741671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_17750143_17750738_17750821_17751399_17751541_17757175_17757338_17758781_17758967_17765072_17765230_17766645_17766830_17773131_17773221_17773423_17773585_17783014_17783147_17786944_17787077_17788582_17788697_17791135_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
ES_00024385	chr17	-	214	1	FSM	ENSMUSG00000116796.2	ENSMUST00000232626.2	1094	1	877	3	877	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	17814161	17813947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_17813900_17814200
ES_00024386	chr17	-	1960	1	FSM	ENSMUSG00000090957.3	ENSMUST00000164167.3	1777	1	-22	-161	-22	161	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTTTTTCGATAGCG	NA	False	NA	NA	False	NA	NA	NA	18133100	18131140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_18131100_18133100
ES_00024389	chr17	-	633	6	NNC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	49	-2144	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	13.6674796506159	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATCAAACCTAAGCAGA	NA	False	NA	NA	False	TATAAA	-26	NA	22064691	22038992	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22039170_22040050_22040178_22042824_22042873_22059126_22059250_22059604_22059696_22064624
ES_00024390	chr17	-	2513	4	FSM	ENSMUSG00000078546.9	ENSMUST00000106026.3	1744	4	-106	-663	-33	663	multi-exon	TRUE	canonical	3	10	junction_1	2.62466929133727	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGTTGTTTCCATTTTCC	NA	False	NA	NA	False	NA	NA	NA	22127179	22097887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029
ES_00024391	chr17	-	600	1	FSM	ENSMUSG00000117049.2	ENSMUST00000233196.2	969	1	208	161	208	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	800	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTCAGCAGCTACCTCAA	NA	False	NA	NA	False	AAGAAA	-19	NA	22139945	22139345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22139300_22139900
ES_00024395	chr17	-	2494	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	0	-13	0	13	multi-exon	FALSE	canonical	3	50	junction_2	18	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACTAAGACA	NA	False	NA	NA	False	NA	NA	NA	22181445	22158712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22160832_22172868_22173035_22181236
ES_00024398	chr17	-	2704	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	172	-4	172	4	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTCCATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22384999	22363335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
ES_00024399	chr17	-	4882	5	FSM	ENSMUSG00000096433.3	ENSMUST00000179996.3	4882	5	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_3	10.6066017177982	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTATTGAGTCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	22444597	22416245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22420791_22421656_22421784_22424285_22424334_22442991_22443076_22444519
ES_00024401	chr17	-	2790	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	-6	0	6	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGTTTTCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
ES_00024402	chr17	-	3172	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	461	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAGAGGTAAGGCTGTT	NA	False	NA	NA	False	ATTAAA	-34	NA	22580381	22556508	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
ES_00024403	chr17	-	2765	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
ES_00024405	chr17	-	6067	4	NNC	ENSMUSG00000117183.2	novel	2370	2	NA	NA	-22988	3349	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_3	5.43650214343336	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGAGTTTGCTTACT	NA	False	NA	-9	True	NA	NA	NA	22958906	22929413	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22935000_22935788_22935916_22937255_22937339_22958635
ES_00024409	chr17	-	4088	6	FSM	ENSMUSG00000002617.15	ENSMUST00000037057.14	4103	6	0	15	0	9	multi-exon	FALSE	canonical	3	8	junction_3	2.41660919471891	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTACTTTAATTTTA	NA	False	NA	NA	False	AATAAA	-27	NA	23412226	23392857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410410_23410650_23410777_23412048
ES_00024410	chr17	-	2680	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	6	0	6	0	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCTTTAGCTGGC	6690	False	NA	NA	False	AATAAA	-20	NA	23783206	23775740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
ES_00024411	chr17	-	3137	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	56	-1089	0	1089	multi-exon	TRUE	canonical	3	79	junction_1	5.98665181883831	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAGATGTTTTATTTAG	4879	False	NA	NA	False	ATTAAA	-27	NA	23805150	23793728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
ES_00024412	chr17	-	3229	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	0	1089	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	26.5736711803243	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAGATGTTTTATTTAG	4838	False	NA	NA	False	ATTAAA	-27	NA	23805191	23793728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_23796137_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
ES_00024413	chr17	-	2090	6	NIC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	27.6579102609	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGGCTCTGTGTGCTT	4815	False	NA	-1	True	ATTAAA	-20	NA	23805214	23794818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800051_23800245_23804411_23804549_23804934
ES_00024414	chr17	-	650	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	391	-440	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	32.2837420383697	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCCGTCGCAACCCTAG	NA	False	NA	NA	False	NA	NA	NA	23818070	23796054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23818015
ES_00024415	chr17	-	862	3	FSM	ENSMUSG00000041319.15	ENSMUST00000125443.2	857	3	0	-5	0	5	multi-exon	FALSE	canonical	3	519	junction_2	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTATTCCCCAAAAATGG	4993	False	NA	-12	True	AATAAA	-23	NA	23888617	23887582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23887861_23887949_23888281_23888364
ES_00024416	chr17	-	1513	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	0	-9	0	5	multi-exon	FALSE	canonical	3	423	junction_10	38.5186643070603	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTATTCCCCAAAAATGG	794	False	NA	-12	True	AATAAA	-23	NA	23892816	23887582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
ES_00024417	chr17	-	1682	11	FSM	ENSMUSG00000041319.15	ENSMUST00000133849.2	1673	11	0	-9	0	5	multi-exon	FALSE	canonical	3	423	junction_8	40.7603974465412	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTATTCCCCAAAAATGG	794	False	NA	-12	True	AATAAA	-23	NA	23892816	23887582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889527_23889614_23889680_23889765_23889882_23892487
ES_00024419	chr17	-	1461	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	-30	0	25	multi-exon	TRUE	canonical	3	69	junction_13	116.170706876108	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCAATTAAGTATAGTGA	765	False	NA	8	True	AATAAA	-43	NA	23892845	23887562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ES_00024421	chr17	-	985	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	-1	0	1	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGCCTGATCCCTAACT	NA	False	NA	0	True	AATAAA	-19	NA	23896442	23894417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
ES_00024422	chr17	-	2575	3	FSM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.5	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGCCTGACCACATTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	23959372	23955159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23956974_23957113_23957336_23958833
ES_00024423	chr17	-	2103	10	NNC	ENSMUSG00000040680.10	novel	2123	10	NA	NA	-520	-1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_9	4.66931141987793	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTAGCAAGTTCTTTG	9882	False	NA	NA	False	AATAAA	-17	NA	23965327	23960171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_23960946_23961170_23961250_23961330_23961457_23961535_23961869_23962193_23962348_23962528_23962654_23962726_23962819_23963516_23963692_23963908_23964078_23965251
ES_00024424	chr17	-	3280	8	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	24.7831410768016	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGTGTGTCAGTAATA	7605	False	NA	1	True	AATAAA	-25	NA	23990496	23971766	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
ES_00024426	chr17	-	2580	7	FSM	ENSMUSG00000040097.17	ENSMUST00000086325.13	2443	7	-80	-57	0	51	multi-exon	FALSE	canonical	3	77	junction_6	22.386131619574	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCATGGAAAATTTGTT	7525	False	NA	NA	False	CATAAA	-16	NA	23990576	23974336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
ES_00024430	chr17	-	580	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	0	-2	0	0	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	False	NA	-3	True	AGTAAA	-18	NA	24048072	24043711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
ES_00024432	chr17	-	596	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	-15	0	0	0	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTACTGCATTTCTCATT	NA	False	NA	-10	True	AGTAAA	-11	NA	24048072	24043718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24043954_24046441_24046548_24047817
ES_00024433	chr17	-	512	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233796.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_2	5708.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047785	24043777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24043954_24046441_24046548_24047555
ES_00024435	chr17	-	416	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	0	-2	0	-2	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGACTTTTCTGTTCCC	NA	False	NA	-34	True	AATAAA	-20	NA	24048088	24043780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
ES_00024440	chr17	-	1242	3	FSM	ENSMUSG00000016946.7	ENSMUST00000234555.2	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	983	junction_1	20.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTTGAGTTATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	24279291	24275735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24276811_24278195_24278288_24279216
ES_00024442	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382740	24374806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ES_00024443	chr17	-	1538	12	FSM	ENSMUSG00000036820.13	ENSMUST00000129523.3	1526	12	0	-12	0	12	multi-exon	TRUE	canonical	2	7	junction_9	128.890369200834	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTGAGCTATGCTTGT	NA	False	NA	0	True	GATAAA	-32	NA	24382638	24374794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24380555_24380688_24381949_24382090_24382169_24382307_24382555
ES_00024447	chr17	-	6269	8	FSM	ENSMUSG00000036473.17	ENSMUST00000040474.11	6269	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	3.89138242053607	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAATCTTTGATTGTGCT	NA	False	NA	NA	False	NA	NA	NA	24424489	24395884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24400370_24400729_24400959_24401423_24401520_24401759_24401824_24402667_24402827_24404177_24405262_24408917_24409028_24424447
ES_00024449	chr17	-	1922	7	ISM	ENSMUSG00000036473.17	ENSMUST00000168410.9	7683	8	24	6097	3	2	5prime_fragment	FALSE	canonical	3	14	junction_5	6.21154838452807	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTAGTTCGAGGGATC	NA	False	NA	NA	False	GATAAA	-19	NA	24424485	24400501	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_24400959_24401423_24401520_24401759_24401824_24402667_24402827_24404177_24405176_24408917_24409028_24424447
ES_00024451	chr17	-	2121	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	39	0	-22	0	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3315	False	NA	0	True	AATAAA	-21	NA	24439786	24434212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
ES_00024453	chr17	-	4293	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	0	-160	0	160	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTTCCCTGTCCTCAT	8675	False	NA	NA	False	NA	NA	NA	24470383	24441011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ES_00024456	chr17	-	2576	14	FSM	ENSMUSG00000024137.10	ENSMUST00000056032.9	2574	14	0	-2	0	1	multi-exon	FALSE	canonical	3	30	junction_6	25.0001183429152	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGATTGGGTAGAG	NA	False	NA	1	True	AATAAA	-18	NA	24674285	24662750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ES_00024457	chr17	-	2489	14	NIC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	26.3685755236784	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTGTGATTGGGTAGA	NA	False	NA	0	True	AATAAA	-17	NA	24674289	24662751	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ES_00024461	chr17	-	2552	14	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_6	16.2546306556464	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTGTGATTGGGTAGA	NA	False	NA	0	True	AATAAA	-17	NA	24674259	24662751	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ES_00024462	chr17	-	551	2	FSM	ENSMUSG00000024137.10	ENSMUST00000226743.2	1377	2	0	826	0	-826	multi-exon	FALSE	canonical	3	8	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTAGTAGATGGCACCA	7412	False	NA	NA	False	NA	NA	NA	24689165	24685257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24685707_24689063
ES_00024463	chr17	-	3860	8	FSM	ENSMUSG00000024142.16	ENSMUST00000234686.2	3855	8	0	-5	0	2	multi-exon	FALSE	canonical	3	68	junction_2	8.85483840989242	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCCGATTGCTTTCTT	9622	False	NA	2	True	AATAAA	-19	NA	24698017	24692522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293
ES_00024464	chr17	-	3361	9	FSM	ENSMUSG00000024142.16	ENSMUST00000070888.14	3358	9	0	-3	0	1	multi-exon	FALSE	canonical	3	60	junction_8	10.0374299499424	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGGCCGATTGCTTTCT	9587	False	NA	1	True	AATAAA	-18	NA	24698052	24692523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
ES_00024465	chr17	-	668	3	FSM	ENSMUSG00000024142.16	ENSMUST00000234032.2	668	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTTGGTAGAGGCATGG	NA	False	NA	NA	False	NA	NA	NA	24697452	24696542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24697000_24697084_24697137_24697293
ES_00024466	chr17	-	3003	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATGTTCAGATGAGGA	NA	False	NA	NA	False	NA	NA	NA	24746912	24727535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
ES_00024467	chr17	-	2611	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_18	68.0276414408143	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746805	24727823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ES_00024468	chr17	-	2602	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_19	108.442277272289	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746801	24727823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737769_24738104_24738221_24746739
ES_00024469	chr17	-	2638	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_19	98.6916789805503	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746818	24727823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738087_24738221_24746739
ES_00024470	chr17	-	2667	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176668.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_17	106.150647666418	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746824	24727823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ES_00024471	chr17	-	2685	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	105.422530798686	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746885	24727823	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ES_00024472	chr17	-	2687	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746864	24727823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
ES_00024474	chr17	-	1729	8	FSM	ENSMUSG00000079657.11	ENSMUST00000177441.2	1658	8	0	-71	0	60	multi-exon	FALSE	canonical	3	65	junction_7	7.80894306783797	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGGAAACACTTAATTTA	NA	False	NA	58	True	NA	NA	NA	24752686	24747967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ES_00024475	chr17	-	1424	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	151	0	-11	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGGAAAACCACCTCCT	NA	False	NA	-2	True	AATAAA	-23	NA	24752711	24748027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ES_00024476	chr17	-	1275	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	32	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	28.0393309769091	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTTTGTGTCATCTGT	NA	False	NA	-17	True	AATAAA	-8	NA	24752654	24748042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24748618_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ES_00024479	chr17	-	6018	40	FSM	ENSMUSG00000002496.11	ENSMUST00000097373.2	6018	40	0	0	0	0	multi-exon	TRUE	canonical	3	83	junction_15	40.6087957618561	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCAGCTTAGATTTTTAG	NA	False	NA	NA	False	GATAAA	-23	NA	24851603	24814910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ES_00024480	chr17	-	5459	40	FSM	ENSMUSG00000002496.11	ENSMUST00000226398.2	5459	40	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_39	50.8383497379318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTGACTTTGTCTT	NA	False	NA	8	True	NA	NA	NA	24851582	24815443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851081_24851511
ES_00024481	chr17	-	5443	40	NNC	ENSMUSG00000002496.11	novel	5432	40	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_38	53.2162916926026	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATTTGACTTTGTCT	NA	False	NA	7	True	NA	NA	NA	24851561	24815444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850914_24851086_24851511
ES_00024482	chr17	-	5452	40	NNC	ENSMUSG00000002496.11	novel	6018	40	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_35	52.4397653892811	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACAGCTTCTTTATTTGA	NA	False	NA	-1	True	NA	NA	NA	24851582	24815452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847080_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ES_00024483	chr17	-	805	5	FSM	ENSMUSG00000002496.11	ENSMUST00000227804.2	798	5	0	-7	0	0	multi-exon	FALSE	canonical	3	16	junction_2	123.038611825719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGTGGAGTTCAGAGAGC	NA	False	NA	-36	True	AATAAA	-18	NA	24817281	24815487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24815741_24815828_24816038_24816178_24816258_24816865_24817006_24817157
ES_00024484	chr17	-	5605	42	FSM	ENSMUSG00000002496.11	ENSMUST00000227745.2	5598	42	0	-7	0	0	multi-exon	FALSE	canonical	3	45	junction_16	65.9182609954111	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGTGGAGTTCAGAGAGC	NA	False	NA	-36	True	AATAAA	-18	NA	24851569	24815487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24820362_24820432_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24825197_24825327_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ES_00024488	chr17	-	1545	4	FSM	ENSMUSG00000002496.11	ENSMUST00000227543.2	1545	4	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_3	28.6860399652669	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTCCTCGCCCGGTAGT	NA	False	NA	NA	False	GGGGCT	-7	NA	24828105	24825345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24826506_24826672_24826776_24827068_24827163_24827917
ES_00024490	chr17	-	1254	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4251	-5	4218	5	3prime_fragment	FALSE	canonical	3	161	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCTGTGTGTTTTCTGAA	NA	False	NA	-1	True	ATTAAA	-22	NA	24859713	24858254	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_24859364_24859568
ES_00024491	chr17	-	2048	6	FSM	ENSMUSG00000002504.16	ENSMUST00000234557.2	2035	6	0	-13	0	13	multi-exon	TRUE	canonical	3	15	junction_1	24.9671784549236	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTGAATCTTCAGT	5179	False	NA	7	True	ATTAAA	-30	NA	24869263	24858246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24859364_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
ES_00024492	chr17	-	2149	7	FSM	ENSMUSG00000002504.16	ENSMUST00000002572.6	2136	7	0	-13	0	13	multi-exon	FALSE	canonical	3	54	junction_5	35.3478743663919	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTGAATCTTCAGT	5141	False	NA	7	True	ATTAAA	-30	NA	24869301	24858246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
ES_00024494	chr17	-	1947	4	FSM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	19	-1	19	1	multi-exon	FALSE	canonical	3	8	junction_2	5.18544972870135	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGTCCCCTGGACTTAT	NA	False	NA	0	True	AATAAA	-24	NA	24908910	24904064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24905415_24905492_24905636_24906476_24906715_24908694
ES_00024496	chr17	-	1226	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234197.2	1162	4	-63	-1	0	1	multi-exon	FALSE	canonical	3	17	junction_1	265.654328446239	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTCTGTGTGCTTTGT	NA	False	NA	-6	True	AATAAA	-18	NA	24915130	24912159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24912611_24913164_24913417_24914227_24914425_24914804
ES_00024497	chr17	-	1182	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234520.2	1177	4	0	-5	0	2	multi-exon	FALSE	canonical	0	0	junction_1	273.584843634779	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTCTGTGTGCTTTGTG	NA	False	NA	-5	True	AATAAA	-19	NA	24915086	24912158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24912587_24913141_24913417_24914227_24914425_24914804
ES_00024498	chr17	-	1151	4	NNC	ENSMUSG00000040888.11	novel	1162	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	231.978926245946	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915064	24912163	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24912611_24913164_24913412_24914227_24914425_24914804
ES_00024499	chr17	-	5175	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	0	51	0	-51	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGCTGTGACCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	24926634	24916973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ES_00024502	chr17	-	1645	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	-177	5	-177	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1909	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGAGCACTTTCTTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	25069515	25067870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25067900_25069500
ES_00024503	chr17	-	1833	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234928.2	1471	6	-356	-6	0	5	multi-exon	TRUE	canonical	3	605	junction_4	61.1391854705311	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105281	25101579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
ES_00024505	chr17	-	1436	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234489.2	1423	7	0	-13	0	5	multi-exon	FALSE	canonical	2	3	junction_4	262.106636483872	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105294	25101579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103561_25104392_25104592_25104692_25104812_25105252
ES_00024506	chr17	-	1450	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	0	-5	0	5	multi-exon	FALSE	canonical	3	14	junction_6	253.310580118557	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105313	25101579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
ES_00024508	chr17	-	1433	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	0	-6	0	5	multi-exon	FALSE	canonical	3	605	junction_4	56.4111888034831	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105322	25101579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ES_00024509	chr17	-	1235	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234352.2	1224	6	0	-11	0	5	multi-exon	FALSE	canonical	3	81	junction_4	254.082191426318	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105323	25101579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105252
ES_00024511	chr17	-	1521	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	4.68606270481621	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1864	False	NA	NA	False	GATAAA	-16	NA	25114061	25111125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
ES_00024512	chr17	-	5433	32	NIC	ENSMUSG00000024163.18	novel	5418	33	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_22	16.9783482121344	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTCTTGAAACTTCAC	NA	False	NA	-25	True	AATAAA	-14	NA	25155919	25116506	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25128123_25128136_25131721_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ES_00024516	chr17	-	3005	7	NNC	ENSMUSG00000024163.18	novel	2943	3	NA	NA	2	-16	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	21.1771627519416	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTTTATACTCTTCAG	NA	False	NA	-18	True	AATAAA	-10	NA	25155939	25134343	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_25136560_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ES_00024517	chr17	-	2672	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	0	0	0	0	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4773	False	NA	-1	True	ATTAAA	-17	NA	25179663	25161443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ES_00024518	chr17	-	445	3	FSM	ENSMUSG00000024165.10	ENSMUST00000233481.2	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	804.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTATGGACTACATTCATAT	4817	False	NA	NA	False	NA	NA	NA	25179619	25167612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25167755_25174991_25175141_25179465
ES_00024519	chr17	-	2789	1	ISM	ENSMUSG00000038002.10	ENSMUST00000073337.8	7519	21	51209	7	51209	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTAATGTCTGTCTTTTG	1441	False	NA	-7	True	CATAAA	-16	NA	25182995	25180206	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_25180200_25183000
ES_00024520	chr17	-	4764	9	ISM	ENSMUSG00000038002.10	ENSMUST00000073337.8	7519	21	37824	7	37824	-7	3prime_fragment	FALSE	canonical	1	2	junction_3	1.49478259288767	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTAATGTCTGTCTTTTG	NA	False	NA	-7	True	CATAAA	-16	NA	25196380	25180206	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_25183921_25187899_25188046_25189388_25189554_25190350_25190583_25191309_25191376_25192054_25192234_25192477_25192583_25193678_25193761_25196305
ES_00024522	chr17	-	3530	21	FSM	ENSMUSG00000024170.16	ENSMUST00000115181.9	3530	21	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_18	13.9207578816672	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTTCTGTGGTTCTTA	NA	False	NA	-1	True	AATAAA	-21	NA	25334941	25318543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
ES_00024527	chr17	-	1287	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	0	-1	0	1	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTTTTTGTTGCATTA	4747	False	NA	NA	False	AATAAA	-10	NA	25492357	25480893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ES_00024528	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	3820	False	NA	NA	False	GATAAA	-19	NA	25493284	25481148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ES_00024529	chr17	-	824	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCATTTCCGCCACTG	4596	False	NA	NA	False	NA	NA	NA	25492508	25481279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
ES_00024531	chr17	-	2755	4	FSM	ENSMUSG00000015120.16	ENSMUST00000172868.8	2755	4	0	0	0	0	multi-exon	FALSE	canonical	3	4214	junction_3	351.970011348821	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTGGCTGCCAGAAGT	4263	False	NA	NA	False	NA	NA	NA	25492841	25485540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25487588_25488165_25488250_25488376_25488454_25492294
ES_00024535	chr17	-	3208	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5683	False	NA	NA	False	NA	NA	NA	25946384	25937899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
ES_00024536	chr17	-	3214	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5674	False	NA	NA	False	NA	NA	NA	25946393	25937899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ES_00024537	chr17	-	3812	19	FSM	ENSMUSG00000019214.15	ENSMUST00000168914.2	3812	19	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_18	106.239247821969	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATGGTGCACTTGGCCT	5727	False	NA	-1	True	TATAAA	-34	NA	25946340	25938003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ES_00024541	chr17	-	2194	17	FSM	ENSMUSG00000063011.8	ENSMUST00000237359.2	2044	17	-134	-16	-134	14	multi-exon	TRUE	canonical	3	34	junction_13	11.5648646230728	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCCTAAGACAAGAGAATGA	6457	False	NA	12	True	AATAAA	-36	NA	25973486	25967572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105_25973197_25973316
ES_00024547	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4253	False	NA	-1	True	NA	NA	NA	26004647	26001762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ES_00024548	chr17	-	1322	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	0	-1	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTTGTTCCAGGAAT	9977	False	NA	-1	True	AATAAA	-23	NA	26011772	26009473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
ES_00024549	chr17	-	1886	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTTGTTCCAGGAAT	9984	False	NA	-1	True	AATAAA	-23	NA	26011875	26009473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26009753_26009906_26009958_26010319
ES_00024550	chr17	-	1267	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
ES_00024551	chr17	-	633	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	-6	0	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTTGTTCCAGGAAT	8378	False	NA	-1	True	AATAAA	-23	NA	26011361	26009473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
ES_00024553	chr17	-	2751	4	FSM	ENSMUSG00000002274.14	ENSMUST00000165838.9	2751	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	5.71547606649408	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGTTTTGGAGGGTAACA	5893	False	NA	NA	False	AATACA	-42	NA	26016057	26012194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26014266_26014347_26014408_26015214_26015616_26015838
ES_00024554	chr17	-	1175	2	FSM	ENSMUSG00000002274.14	ENSMUST00000237849.2	1175	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTAGTCATGGTCTT	6895	False	NA	-2	True	NA	NA	NA	26015055	26013798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26014266_26014347
ES_00024555	chr17	-	698	4	FSM	ENSMUSG00000002274.14	ENSMUST00000235925.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	38.3173879879908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGAGCTGGTAGAATA	6008	False	NA	-44	True	NA	NA	NA	26015942	26013840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26014266_26014347_26014408_26015214_26015324_26015838
ES_00024556	chr17	-	1269	4	FSM	ENSMUSG00000002274.14	ENSMUST00000235294.2	1198	4	-71	0	10	0	multi-exon	FALSE	canonical	1	3	junction_2	43.8482230730809	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGGGTGTGGCTCGGAT	5850	False	NA	-78	True	NA	NA	NA	26016100	26013874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26014266_26014347_26014408_26015059_26015616_26015838
ES_00024558	chr17	-	1803	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	0	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAGAAAAAAAAAATTT	6345	False	NA	NA	False	AATACA	-10	NA	26052335	26049478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ES_00024559	chr17	-	1428	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	0	-20	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGCCAGTTGCCTG	6787	False	NA	1	True	AATAAA	-35	NA	26051893	26049589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
ES_00024560	chr17	-	1341	7	FSM	ENSMUSG00000039615.10	ENSMUST00000237186.2	1341	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	575.587139845528	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGCCAGTTGCCTG	6302	False	NA	1	True	AATAAA	-35	NA	26052378	26049589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26052059
ES_00024561	chr17	-	1500	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	0	-2	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6787	False	NA	-17	True	AATAAA	-17	NA	26051893	26049607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
ES_00024567	chr17	-	5946	40	FSM	ENSMUSG00000073434.13	ENSMUST00000177170.8	5946	40	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_38	17.2815567151329	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTTTATTGTCCCAT	9926	False	NA	NA	False	AATAAA	-23	NA	26080357	26063744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079682_26079792_26079880
ES_00024574	chr17	-	942	6	FSM	ENSMUSG00000025732.7	ENSMUST00000237080.2	945	6	0	3	0	-2	multi-exon	FALSE	canonical	3	13	junction_4	129.343882731268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTCGGGTGTTGGTGA	7792	False	NA	-7	True	AATAAA	-12	NA	26087708	26082674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26084508_26084642_26087387_26087518_26087598
ES_00024575	chr17	-	846	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	0	-4	0	4	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTGTTGGTGATTGGTGA	7762	False	NA	0	True	AATAAA	-19	NA	26087738	26082667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
ES_00024577	chr17	-	2470	7	FSM	ENSMUSG00000025730.15	ENSMUST00000026826.14	2466	7	0	-4	0	4	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGGCTTCATCTGACT	NA	False	NA	3	True	AGTAAA	-21	NA	26138688	26101083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
ES_00024578	chr17	-	2621	6	FSM	ENSMUSG00000025730.15	ENSMUST00000167626.8	2506	6	-113	-2	-38	2	multi-exon	FALSE	canonical	3	194	junction_1	13.251415018782	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCTGGCTTCATCTGA	NA	False	NA	1	True	AGTAAA	-19	NA	26138739	26101085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338
ES_00024582	chr17	-	3285	10	FSM	ENSMUSG00000025728.17	ENSMUST00000148045.8	3278	10	0	-7	0	0	multi-exon	FALSE	canonical	3	238	junction_4	24.6761743438263	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTCCTGCTCGTC	NA	False	NA	1	True	AATAAA	-24	NA	26160857	26145394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ES_00024583	chr17	-	3233	12	FSM	ENSMUSG00000025728.17	ENSMUST00000097368.10	3233	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	110.581782308445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCAGCTTGGGTGTCCT	NA	False	NA	-6	True	AATAAA	-17	NA	26160909	26145401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153067_26153248_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ES_00024585	chr17	-	4975	11	NIC	ENSMUSG00000037326.11	novel	5216	12	NA	NA	-40	2	intron_retention	FALSE	canonical	0	0	junction_4	23.9282260103001	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTCTGTTGTCACCCT	1682	False	NA	-4	True	AATAAA	-23	NA	26204810	26177335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_26178708_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ES_00024586	chr17	-	4543	11	FSM	ENSMUSG00000037326.11	ENSMUST00000212789.2	4536	11	0	-7	0	2	multi-exon	TRUE	canonical	0	0	junction_4	31.9751465985693	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTCTGTTGTCACCCT	1838	False	NA	-4	True	AATAAA	-23	NA	26204654	26177335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26178704_26178780_26178960_26179310_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ES_00024587	chr17	-	4925	10	FSM	ENSMUSG00000037326.11	ENSMUST00000212735.2	4922	10	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_3	25.1793566240283	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATTCTGTTGTCACCCTT	1812	False	NA	-3	True	AATAAA	-24	NA	26204680	26177334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26178708_26178780_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ES_00024588	chr17	-	5191	12	FSM	ENSMUSG00000037326.11	ENSMUST00000212520.2	5216	12	32	-7	32	1	multi-exon	FALSE	canonical	0	0	junction_4	31.7674920904847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCATTCTGTTGTCACCC	1754	False	NA	-5	True	AATAAA	-22	NA	26204738	26177336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26178708_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26192064_26192354_26204444
ES_00024590	chr17	-	5249	14	FSM	ENSMUSG00000037098.19	ENSMUST00000120691.9	5249	14	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_9	17.5610515785467	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACGGAGCCGGCTTCTT	NA	False	NA	-9	True	ATTAAA	-10	NA	26288529	26208018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26227828_26227865_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
ES_00024591	chr17	-	5482	15	FSM	ENSMUSG00000037098.19	ENSMUST00000122103.9	5383	15	0	-99	0	99	multi-exon	FALSE	canonical	3	33	junction_10	23.7715530559927	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCAAAGAAACCCACTGT	NA	False	NA	99	True	NA	NA	NA	26288519	26207910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26227828_26227865_26230970_26231106_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
ES_00024593	chr17	-	2227	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	0	-3	0	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGCTTGTGTTTCCTGTC	NA	False	NA	-1	True	NA	NA	NA	26309311	26300181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ES_00024595	chr17	-	928	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	0	-2	0	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314447	26310707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ES_00024596	chr17	-	1182	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	0	-6	0	0	multi-exon	FALSE	canonical	3	304	junction_1	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314447	26310707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26311127_26312590_26313245_26314338
ES_00024597	chr17	-	953	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	53	0	53	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314523	26310707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ES_00024599	chr17	-	1038	6	FSM	ENSMUSG00000073433.12	ENSMUST00000025019.9	1032	6	0	-6	0	6	multi-exon	TRUE	canonical	3	81	junction_2	6.72309452558864	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGCTTCTTTCTGCCT	NA	False	NA	2	True	ATTAAA	-23	NA	26420324	26418150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26420044
ES_00024600	chr17	-	1039	6	FSM	ENSMUSG00000073433.12	ENSMUST00000121959.3	1029	6	0	-10	0	6	multi-exon	FALSE	canonical	3	7	junction_2	34.8906864363543	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGCTTCTTTCTGCCT	NA	False	NA	2	True	ATTAAA	-23	NA	26420343	26418150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26418504_26418586_26418651_26418743_26418803_26418988_26419073_26419164_26419345_26420044
ES_00024601	chr17	-	2820	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234554.2	2828	13	0	8	0	-8	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTCTGTCTGGATG	1920	False	NA	-6	True	AATAAA	-42	NA	26463196	26431672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ES_00024602	chr17	-	2837	13	FSM	ENSMUSG00000024187.16	ENSMUST00000114988.8	3714	13	0	877	0	-8	multi-exon	FALSE	canonical	3	154	junction_12	26.8089951736767	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTCTGTCTGGATG	1919	False	NA	-6	True	AATAAA	-42	NA	26463197	26431672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462979
ES_00024603	chr17	-	2645	12	FSM	ENSMUSG00000024187.16	ENSMUST00000118487.8	2629	12	0	-16	0	-6	multi-exon	FALSE	canonical	3	29	junction_11	57.0232662389834	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTCTGTCTGGATGTC	2001	False	NA	-4	True	AATAAA	-44	NA	26463115	26431670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462979
ES_00024604	chr17	-	2846	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	-13	0	-6	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTCTGTCTGGATGTC	1928	False	NA	-4	True	AATAAA	-44	NA	26463188	26431670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
ES_00024605	chr17	-	2787	13	NIC	ENSMUSG00000024187.16	novel	3714	13	NA	NA	-23	-8	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	58.4886028783956	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTCTGTCTGGATG	1951	False	NA	-6	True	AATAAA	-42	NA	26463165	26431672	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_26432692_26432777_26432881_26433319_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462979
ES_00024607	chr17	-	201	1	Genic_Genomic	ENSMUSG00000118107.2	novel	NA	NA	NA	NA	23196	47	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACTGTTTTCCCACCA	NA	False	NA	NA	False	AAAAAG	-21	NA	26686687	26686486	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_26686500_26686700
ES_00024610	chr17	-	688	6	ISM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	135	0	0	0	3prime_fragment	FALSE	canonical	3	511	junction_5	169.834507683215	1244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9387	False	NA	-17	True	AATAAA	-18	NA	27158408	27156945	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290
ES_00024611	chr17	-	912	5	ISM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	109	-1	0	0	3prime_fragment	FALSE	canonical	3	797	junction_3	67.913547985656	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9387	False	NA	-17	True	AATAAA	-18	NA	27158408	27156945	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857
ES_00024612	chr17	-	1130	4	FSM	ENSMUSG00000024194.17	ENSMUST00000235442.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_3	309.969174094601	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9300	False	NA	-17	True	AATAAA	-18	NA	27158495	27156945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157761_27157857_27158343_27158424
ES_00024613	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9252	False	NA	-17	True	AATAAA	-18	NA	27158543	27156945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ES_00024614	chr17	-	663	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	-1	0	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9278	False	NA	-17	True	AATAAA	-18	NA	27158517	27156945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
ES_00024615	chr17	-	1476	2	FSM	ENSMUSG00000024194.17	ENSMUST00000235341.2	1476	2	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9288	False	NA	-21	True	AATAAA	-14	NA	27158507	27156949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27158343_27158424
ES_00024616	chr17	-	937	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9276	False	NA	-21	True	AATAAA	-14	NA	27158519	27156949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
ES_00024618	chr17	-	496	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	4	0	1	multi-exon	FALSE	canonical	3	2713	junction_1	153.559977424675	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTGGTTTGGAACTCAT	1947	False	NA	-2	True	AATAAA	-20	NA	27352890	27341640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
ES_00024619	chr17	-	3370	7	FSM	ENSMUSG00000044857.9	ENSMUST00000236082.2	2808	7	-562	0	-562	0	multi-exon	FALSE	canonical	3	449	junction_5	60.6840634397167	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTATTTGTGGTGC	6499	False	NA	-1	True	AATAAA	-19	NA	27420007	27408573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336
ES_00024620	chr17	-	2628	9	FSM	ENSMUSG00000044857.9	ENSMUST00000055117.9	2627	9	0	-1	0	1	multi-exon	FALSE	canonical	3	431	junction_7	66.5158580715907	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTTATTTGTGGTGCT	7993	False	NA	0	True	AATAAA	-20	NA	27423443	27408572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336_27418413_27420610_27420652_27422632
ES_00024621	chr17	-	856	4	FSM	ENSMUSG00000044857.9	ENSMUST00000236101.2	856	4	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_2	49.1347353938354	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGAAGAGCCAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	27414664	27411766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27412009_27412076_27412179_27412811_27412958_27414298
ES_00024622	chr17	-	486	4	FSM	ENSMUSG00000044857.9	ENSMUST00000236492.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_3	46.783187863448	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGAACAGGACATGGAGC	NA	False	NA	NA	False	NA	NA	NA	27415174	27411983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27412179_27412811_27412958_27414298_27414379_27415109
ES_00024623	chr17	-	820	3	FSM	ENSMUSG00000044857.9	ENSMUST00000236055.2	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_2	40	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGTGCATGCATGGGAG	5855	False	NA	NA	False	NA	NA	NA	27420651	27414483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27415187_27418336_27418413_27420610
ES_00024624	chr17	-	2155	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	0	-6	0	6	multi-exon	TRUE	canonical	3	72	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGACTTGGGTTTTTTTG	6249	False	NA	-3	True	NA	NA	NA	27461633	27454042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27456112_27461547
ES_00024625	chr17	-	2008	4	Antisense	novelGene_ENSMUSG00000099237.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	4.98887651569859	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGTCCAT	7515	False	NA	NA	False	NA	NA	NA	27548993	27543035	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_27544513_27544829_27544999_27545783_27545977_27548824
ES_00024626	chr17	-	4582	11	FSM	ENSMUSG00000063239.18	ENSMUST00000118161.3	4607	11	20	5	20	3	multi-exon	FALSE	canonical	2	4	junction_10	6.16116872029975	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCCTGCGTGTCCACTG	NA	False	NA	-5	True	AATAAA	-21	NA	27732360	27644877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27645808_27650305_27650553_27653506_27654443_27657269_27657407_27657635_27657837_27669098_27669240_27670878_27671034_27673460_27673597_27691881_27692099_27721620_27722508_27731765
ES_00024627	chr17	-	2243	6	NNC	ENSMUSG00000024213.15	novel	2223	5	NA	NA	0	54314	intron_retention	FALSE	non_canonical	0	0	junction_1	138.057379375389	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCATTAAAAATAAGGTT	NA	False	NA	NA	False	NA	NA	NA	27842469	27744041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_27744067_27798360_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
ES_00024628	chr17	-	862	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACAAGGGGAGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	27784730	27782546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
ES_00024632	chr17	-	610	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	0	-2	0	0	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784700	27782742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
ES_00024634	chr17	-	2223	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_4	16.1458198924675	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTGTTCCATGTCAG	NA	False	NA	-18	True	AATAAA	-23	NA	27842469	27798355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
ES_00024636	chr17	-	886	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114882.9	887	6	0	1	0	-1	multi-exon	FALSE	canonical	3	4719	junction_5	828.025700084243	2346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTGTGTATGTTCTGTA	NA	False	NA	NA	False	AATAAA	-19	NA	27854519	27849392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ES_00024638	chr17	-	522	5	FSM	ENSMUSG00000052146.17	ENSMUST00000025052.14	522	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2686.58356467838	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27849481_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ES_00024639	chr17	-	646	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114881.9	644	6	0	-2	0	0	multi-exon	FALSE	canonical	3	43	junction_5	2469.22413725445	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27855643	27849395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27855538
ES_00024640	chr17	-	712	5	FSM	ENSMUSG00000052146.17	ENSMUST00000155071.9	712	5	0	0	0	0	multi-exon	FALSE	canonical	3	4719	junction_4	780.063899626178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGACCCGAAACAGAATTG	NA	False	NA	NA	False	NA	NA	NA	27854202	27849942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ES_00024641	chr17	-	822	3	FSM	ENSMUSG00000052146.17	ENSMUST00000152982.3	822	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	3108	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTACTGATTCTGATTGCCC	NA	False	NA	NA	False	NA	NA	NA	27854218	27853046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27853218_27853299_27853450_27853717
ES_00024642	chr17	-	3892	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	5.43139024560011	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTGCGTGTGATTCT	NA	False	NA	-1	True	ATTAAA	-34	NA	28039599	27970208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882_28013038_28039150
ES_00024643	chr17	-	3703	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114859.9	3573	5	-119	-11	-13	0	multi-exon	FALSE	canonical	2	6	junction_1	15.5463018110418	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTGCGTGTGATTCT	NA	False	NA	-1	True	ATTAAA	-34	NA	28039635	27970208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27972970_27987109_27987214_28005044_28005243_28012882_28013038_28039150
ES_00024645	chr17	-	1224	5	FSM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	0	-4	0	0	multi-exon	FALSE	canonical	3	141	junction_3	9.9373034571759	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGTTTCTCTGTGTTGCC	NA	False	NA	-5	True	AATAAA	-23	NA	28126698	28120097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
ES_00024648	chr17	-	2159	10	FSM	ENSMUSG00000062859.16	ENSMUST00000042692.13	1989	10	-42	-128	10	128	multi-exon	FALSE	canonical	3	14	junction_9	11.2787355915107	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCAAGGGTAAAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	28299603	28285590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299493
ES_00024650	chr17	-	2278	8	FSM	ENSMUSG00000062859.16	ENSMUST00000233587.2	1978	8	-166	-134	-166	128	multi-exon	FALSE	canonical	3	28	junction_6	7.83503382902977	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCAAGGGTAAAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	28297645	28285590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959
ES_00024652	chr17	-	1950	10	FSM	ENSMUSG00000062859.16	ENSMUST00000129046.9	1948	10	0	-2	0	0	multi-exon	FALSE	canonical	3	11	junction_9	12.0349285902676	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCATTCTTCTTTGATGC	NA	False	NA	1	True	AATAAA	-20	NA	28299577	28285718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299548
ES_00024653	chr17	-	1867	10	FSM	ENSMUSG00000062859.16	ENSMUST00000043925.16	1743	10	10	-134	10	128	multi-exon	FALSE	canonical	3	11	junction_9	14.4743280617618	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCAAGGGTAAAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	28299603	28285590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299548
ES_00024654	chr17	-	1628	1	FSM	ENSMUSG00000085521.5	ENSMUST00000142461.2	1628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGGAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	28295651	28294023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28294000_28295700
ES_00024655	chr17	-	1062	1	FSM	ENSMUSG00000117028.2	ENSMUST00000232711.2	1064	1	-12	14	-12	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	3871	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTTTTCCATACAACAT	8878	False	NA	NA	False	NA	NA	NA	28443153	28442091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28442100_28443200
ES_00024656	chr17	-	1557	1	FSM	ENSMUSG00000117303.2	ENSMUST00000232734.2	1569	1	54	-42	54	42	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATGCTTGAGCACTCT	5090	False	NA	NA	False	NA	NA	NA	28547441	28545884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28545900_28547400
ES_00024659	chr17	-	3565	12	NNC	ENSMUSG00000024222.18	novel	3543	11	NA	NA	0	31197	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	168.662801162164	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCATCGTAGGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	28705123	28586870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28586896_28618070_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28704925
ES_00024661	chr17	-	3555	11	FSM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	0	-12	0	12	multi-exon	FALSE	canonical	2	296	junction_7	83.3980815127063	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTGTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-30	NA	28705123	28618055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28704925
ES_00024664	chr17	-	2065	2	Intergenic	novelGene_1742	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCAGTGTTGTCGCTCTTTC	7629	False	NA	NA	False	NA	NA	NA	28762646	28760150	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_28760443_28760873
ES_00024666	chr17	-	4369	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCACAAGTTTGGTTTCT	NA	False	NA	-7	True	AATAAA	-24	NA	28841461	28806617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28808345_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ES_00024667	chr17	-	4809	15	FSM	ENSMUSG00000004865.17	ENSMUST00000233440.2	4804	15	0	-5	0	5	multi-exon	FALSE	canonical	3	554	junction_1	84.536943982848	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACAAGTTTGGTTTCTT	NA	False	NA	-6	True	AATAAA	-25	NA	28841461	28806616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ES_00024668	chr17	-	4739	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	-82	-4	-82	4	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCACAAGTTTGGTTTCT	NA	False	NA	-7	True	AATAAA	-24	NA	28841765	28806617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ES_00024675	chr17	-	296	3	FSM	ENSMUSG00000045378.6	ENSMUST00000232977.2	296	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	13.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAGGACAGACAGACAAG	4637	False	NA	NA	False	NA	NA	NA	29162814	29153675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29153781_29160215_29160344_29162751
ES_00024677	chr17	-	3354	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
ES_00024686	chr17	-	1378	1	FSM	ENSMUSG00000086154.3	ENSMUST00000233751.2	1708	1	97	233	97	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	526	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTCTACATAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	29251445	29250067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29250100_29251400
ES_00024687	chr17	-	3087	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233478.2	1437	2	-9	-1641	-9	20	multi-exon	FALSE	canonical	1	2	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAAAGACTCCAAGGCTC	NA	False	NA	NA	False	CATAAA	-21	NA	29291782	29276383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29279333_29291644
ES_00024688	chr17	-	333	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2247	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	29356278	29355945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29355900_29356300
ES_00024691	chr17	-	1457	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	5	0	5	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGGCCTTTTCTCTTTT	9694	False	NA	1	True	NA	NA	NA	29483155	29469776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ES_00024692	chr17	-	2437	1	FSM	ENSMUSG00000117592.2	ENSMUST00000234551.2	2437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGGCCTCCACTGTCTG	8246	False	NA	NA	False	AATAAA	-34	NA	29541391	29538954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29539000_29541400
ES_00024693	chr17	-	1834	12	FSM	ENSMUSG00000024012.19	ENSMUST00000118366.9	1897	12	61	2	61	-2	multi-exon	FALSE	canonical	3	643	junction_4	160.665917948029	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCTGTGCAAGCCTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	29566847	29551051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
ES_00024694	chr17	-	1885	12	FSM	ENSMUSG00000024012.19	ENSMUST00000095427.12	1952	12	61	6	61	-2	multi-exon	FALSE	canonical	3	492	junction_4	200.604458475704	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCTGTGCAAGCCTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	29566847	29551051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
ES_00024697	chr17	-	1315	1	FSM	ENSMUSG00000091614.3	ENSMUST00000168877.2	510	1	-68	-737	-68	98	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTGGTTCAGTGGTAG	NA	False	NA	NA	False	ATTAAA	-14	NA	29738832	29737517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29737500_29738800
ES_00024698	chr17	-	594	4	FSM	ENSMUSG00000024018.19	ENSMUST00000131807.8	594	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	115.788120672584	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGAGGAAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	29935937	29918972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29919227_29923228_29923444_29924462_29924558_29935907
ES_00024701	chr17	-	1390	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	7	0	7	0	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCTGTAAGACACACTGA	NA	False	NA	NA	False	AGTAAA	-20	NA	29936011	29922305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
ES_00024702	chr17	-	1478	9	FSM	ENSMUSG00000043557.17	ENSMUST00000165528.8	1477	9	0	-1	0	0	multi-exon	FALSE	canonical	2	2	junction_8	2.5	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCAGCACCTTCTTTAC	NA	False	NA	-1	True	ATTAAA	-19	NA	30061395	30051028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30051374_30051886_30051996_30052195_30052327_30056965_30057101_30057410_30057564_30058522_30058547_30058778_30058957_30059770_30059871_30061092
ES_00024703	chr17	-	7045	11	FSM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	0	13	0	-13	multi-exon	FALSE	canonical	3	53	junction_4	22.2551117723547	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCTTCGATACCCGAGT	NA	False	NA	NA	False	AATAAA	-3	NA	30795462	30434510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ES_00024705	chr17	-	528	1	FSM	ENSMUSG00000117962.2	ENSMUST00000235315.2	414	1	-80	-34	-80	34	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAGAAAAGAA	9200	False	NA	NA	False	NA	NA	NA	30615087	30614559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30614600_30615100
ES_00024706	chr17	-	1309	6	FSM	ENSMUSG00000062202.15	ENSMUST00000236910.2	1375	6	0	66	0	-66	multi-exon	FALSE	canonical	3	100	junction_1	4.24264068711928	1318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTCATTTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	30795233	30732515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ES_00024707	chr17	-	9420	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	0	445	0	-445	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTTGATCAGTATTCTG	NA	False	NA	NA	False	NA	NA	NA	30831633	30804354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ES_00024708	chr17	-	900	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	0	-5	0	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30831633	30811834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ES_00024710	chr17	-	848	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	0	-3	0	3	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTCCTCTGAGATGACA	NA	False	NA	2	True	AATAAA	-28	NA	30845879	30841411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
ES_00024713	chr17	-	232	2	Antisense	novelGene_ENSMUSG00000033826.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	379	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAATGGTTTTGGAATTT	NA	False	NA	NA	False	NA	NA	NA	30884400	30863680	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_30863862_30884349
ES_00024714	chr17	-	230	1	Intergenic	novelGene_1755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAACTGAGTCTCCATTT	NA	False	NA	NA	False	NA	NA	NA	31104522	31104292	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_31104300_31104500
ES_00024716	chr17	-	1646	1	FSM	ENSMUSG00000118295.2	ENSMUST00000236752.2	2938	1	-64	1356	-64	-1356	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTTTGGCTAGATGTT	4221	False	NA	NA	False	NA	NA	NA	31515727	31514081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31514100_31515700
ES_00024717	chr17	-	3724	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	430	0	-12	0	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGTTGTCTCTGTGTCTT	NA	False	NA	0	True	ATTAAA	-23	NA	31731295	31713295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
ES_00024718	chr17	-	769	5	FSM	ENSMUSG00000024037.14	ENSMUST00000166992.2	769	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_4	28.6039769962151	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAAGGGTCATTTCATC	6998	False	NA	NA	False	NA	NA	NA	31722553	31718421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483
ES_00024722	chr17	-	1040	9	Fusion	ENSMUSG00000061613.14_ENSMUSG00000118071.2	novel	975	9	NA	NA	0	-1165	multi-exon	FALSE	canonical	0	0	junction_1	2066.5670053255	196	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGCCTGGCTTGTCTA	NA	False	NA	NA	False	AGTAAA	-22	NA	31877677	31782920	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_31783107_31866057_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00024725	chr17	-	2421	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	-18	0	0	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTTGGTGTGAGTGTC	1945	False	NA	1	True	NA	NA	NA	31856139	31831596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ES_00024726	chr17	-	6228	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	15	-3710	15	-19	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCAGATTCCATCTGCC	1887	False	NA	NA	False	NA	NA	NA	31856197	31827886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ES_00024727	chr17	-	1461	5	FSM	ENSMUSG00000024039.16	ENSMUST00000151597.3	1461	5	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	36.8942746235781	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACCTGTGGTCGTGTCGA	7665	False	NA	-24	True	NA	NA	NA	31836847	31831621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361
ES_00024728	chr17	-	966	2	Genic_Genomic	ENSMUSG00000118161.2	novel	882	1	NA	NA	0	5301	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAAAAGAAACTTC	7279	False	NA	NA	False	NA	NA	NA	31863753	31857570	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_31857601_31862817
ES_00024729	chr17	-	891	9	NNC	ENSMUSG00000061613.14	novel	975	9	NA	NA	0	8484	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2066.5670053255	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAAAAGAAACTTC	NA	False	NA	NA	False	NA	NA	NA	31877677	31857570	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_31857607_31866056_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00024730	chr17	-	882	1	FSM	ENSMUSG00000118161.2	ENSMUST00000236305.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	7279	False	NA	NA	False	NA	NA	NA	31863753	31862871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31862900_31863800
ES_00024731	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877743	31866054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ES_00024732	chr17	-	995	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	0	-20	0	19	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTTTGCCTGCAATTGCT	NA	False	NA	2	True	AATAAA	-38	NA	31877729	31866035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
ES_00024733	chr17	-	1008	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	38	0	38	0	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877828	31866054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00024735	chr17	-	4521	14	FSM	ENSMUSG00000024042.8	ENSMUST00000024839.6	4521	14	0	0	0	0	multi-exon	FALSE	canonical	2	135	junction_9	20.6380472449028	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTGTGAGAGCCCATTC	NA	False	NA	-4	True	AATAAA	-34	NA	32074778	32063223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070208_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
ES_00024736	chr17	-	3450	14	NNC	ENSMUSG00000024042.8	novel	4521	14	NA	NA	3	-1074	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	51.6911629909886	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATTTTTTTCTATTTTGT	NA	False	NA	-20	True	TATAAA	-17	NA	32074775	32064297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070202_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
ES_00024738	chr17	-	2918	8	NNC	ENSMUSG00000002076.13	novel	2867	8	NA	NA	0	179	at_least_one_novel_splicesite	FALSE	non_canonical	3	53	junction_1	471.788607106952	152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCCATTCCTCCCCACT	NA	False	NA	NA	False	NA	NA	NA	32253482	32163563	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32164934_32164957_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ES_00024739	chr17	-	3115	9	FSM	ENSMUSG00000002076.13	ENSMUST00000238192.2	3115	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	409.307036343134	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCTTGCAGGGATTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	32255323	32163742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418_32253677_32255269
ES_00024740	chr17	-	1554	8	FSM	ENSMUSG00000002076.13	ENSMUST00000002145.12	2867	8	0	1313	0	0	multi-exon	FALSE	canonical	3	776	junction_1	207.062940248828	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253482	32165055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ES_00024741	chr17	-	1479	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253511	32165055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ES_00024742	chr17	-	8076	33	FSM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	-60	0	-60	0	multi-exon	TRUE	canonical	3	42	junction_20	15.8899720244404	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGGTTTCTGTGCAAG	5979	False	NA	-1	True	AATAAA	-19	NA	32385886	32339793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190_32360524_32362217_32362784_32363141_32363261_32363340_32363599_32363675_32363809_32365380_32365566_32365954_32366103_32366235_32366438_32366738_32366965_32368948_32369105_32369576_32369691_32370259_32370412_32370489_32370683_32372498_32372610_32372726_32372961_32373287_32373402_32373711_32373826_32374931_32375118_32375225_32375382_32376864_32377099_32377184_32377308_32377392_32377732_32377813_32377957_32383136_32383219_32385649
ES_00024743	chr17	-	1591	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	994	False	NA	NA	False	CATAAA	-26	NA	32408523	32403633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
ES_00024744	chr17	-	7022	20	FSM	ENSMUSG00000024002.19	ENSMUST00000121285.8	5922	20	0	-1100	0	1100	multi-exon	FALSE	canonical	3	16	junction_19	70.5239591122355	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGACTTTTCACTTATAT	NA	False	NA	NA	False	ATTAAA	-29	NA	32503083	32414147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503036
ES_00024745	chr17	-	5857	20	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	48.2561838501388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTGTCTCCCTGAAAT	NA	False	NA	-4	True	AATAAA	-19	NA	32503732	32415247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503491
ES_00024746	chr17	-	5969	21	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_20	62.1417733895646	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTGTCTCCCTGAAAT	NA	False	NA	-4	True	AATAAA	-19	NA	32503684	32415247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
ES_00024748	chr17	-	4783	13	FSM	ENSMUSG00000024002.19	ENSMUST00000120276.9	4486	13	0	-297	0	297	multi-exon	FALSE	canonical	3	11	junction_1	93.8707740578622	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAACTTGAGGCAGGTGGT	NA	False	NA	NA	False	NA	NA	NA	32503083	32423586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32425968_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503036
ES_00024751	chr17	-	2118	11	FSM	ENSMUSG00000024002.19	ENSMUST00000125899.2	2118	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	101.852049562098	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAGGAAAAGCAC	NA	False	NA	5	True	NA	NA	NA	32503651	32432618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32443832_32443961_32444549_32444688_32448390_32448710_32472014_32472175_32503491
ES_00024753	chr17	-	4073	13	FSM	ENSMUSG00000024045.7	ENSMUST00000237103.2	4071	13	0	-2	0	0	multi-exon	FALSE	canonical	3	426	junction_6	76.8282265114124	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGTTCATTAATTAC	NA	False	NA	-1	True	AATAAA	-16	NA	32540099	32522645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
ES_00024754	chr17	-	4572	14	FSM	ENSMUSG00000024045.7	ENSMUST00000237381.2	4570	14	0	-2	0	0	multi-exon	FALSE	canonical	3	68	junction_6	145.1715981155	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGTTCATTAATTAC	NA	False	NA	-1	True	AATAAA	-16	NA	32540111	32522645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
ES_00024756	chr17	-	4183	13	FSM	ENSMUSG00000024045.7	ENSMUST00000235205.2	4183	13	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_6	70.5212241495818	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGTTCATTAATTAC	NA	False	NA	-1	True	AATAAA	-16	NA	32540212	32522645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32536321_32536819_32536853_32537744_32537784_32540058
ES_00024759	chr17	-	4358	3	FSM	ENSMUSG00000024045.7	ENSMUST00000237733.2	4358	3	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_1	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATTACCTTT	NA	False	NA	NA	False	NA	NA	NA	32540119	32533320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32534463_32534628_32537784_32540058
ES_00024761	chr17	-	2176	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	-3	-71	-3	71	multi-exon	FALSE	canonical	3	272	junction_6	38.0609912279546	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCACGCGTGCGCGGACC	NA	False	NA	71	True	NA	NA	NA	32569584	32540326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ES_00024762	chr17	-	3513	13	FSM	ENSMUSG00000002625.11	ENSMUST00000236039.2	3513	13	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_5	37.9549257526462	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569549	32540397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ES_00024763	chr17	-	4381	12	FSM	ENSMUSG00000002625.11	ENSMUST00000236105.2	4381	12	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_7	23.6967759427869	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569551	32540397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ES_00024764	chr17	-	1988	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	0	-1	0	0	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569569	32540397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ES_00024765	chr17	-	916	8	FSM	ENSMUSG00000002625.11	ENSMUST00000235614.2	916	8	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_6	163.062527133312	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCACCAGAAGAGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	32554553	32540584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32552879_32553020_32553561_32553671_32554536
ES_00024766	chr17	-	892	8	FSM	ENSMUSG00000002625.11	ENSMUST00000237936.2	892	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	143.455034553603	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGACCAAGATCTGACCC	NA	False	NA	NA	False	NA	NA	NA	32555527	32551807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32551891_32551976_32552119_32553561_32553671_32554084_32554145_32554536_32554598_32554931_32555003_32555080_32555178_32555258
ES_00024767	chr17	-	452	5	FSM	ENSMUSG00000002625.11	ENSMUST00000235265.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	164.131616393674	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCATGCCTGGTGCCTCC	NA	False	NA	NA	False	NA	NA	NA	32569480	32555446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32555713_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ES_00024769	chr17	-	4421	9	FSM	ENSMUSG00000024050.19	ENSMUST00000169488.10	3578	9	0	-843	0	249	multi-exon	FALSE	canonical	3	73	junction_5	52.6413276333339	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAACCAGCCACAATAACA	NA	False	NA	NA	False	NA	NA	NA	32583437	32572779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32579011_32579402_32580434_32580939_32581766_32581938_32583155
ES_00024770	chr17	-	3792	8	NIC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	0	10	combination_of_known_junctions	FALSE	canonical	3	128	junction_5	27.8384552703043	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGTTTTTTTCTGTGA	NA	False	NA	0	True	ATTAAA	-34	NA	32583437	32573018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32580434_32580939_32581766_32581938_32583155
ES_00024774	chr17	-	10851	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGGTGCTGTCAT	NA	False	NA	-5	True	NA	NA	NA	33007261	32984469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
ES_00024776	chr17	-	5993	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202988.4	6012	4	10	9	-5	-3	multi-exon	FALSE	canonical	3	24	junction_2	7.93025150224688	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCAAAAAAGAAAGACTACT	NA	False	NA	NA	False	NA	NA	NA	33049225	33034431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33040074_33040751_33040813_33041047_33041175_33049062
ES_00024778	chr17	-	413	2	FSM	ENSMUSG00000117654.2	ENSMUST00000234587.2	1195	2	0	782	0	-782	multi-exon	FALSE	canonical	3	5	junction_1	0	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTCTCTTTGAGAACAC	NA	False	NA	NA	False	NA	NA	NA	33096916	33083417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33083596_33096681
ES_00024779	chr17	-	5328	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	9	0	9	0	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCAGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	33110607	33098192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
ES_00024780	chr17	-	2704	4	NNC	ENSMUSG00000095325.4	novel	5337	4	NA	NA	19	2084	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	73.254503084945	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAACTCAAAAATTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	33110545	33100751	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33103137_33104676_33104738_33104930_33105058_33110414
ES_00024781	chr17	-	1246	10	Fusion	ENSMUSG00000024292.16_ENSMUSG00000024055.16	novel	731	6	NA	NA	0	-1443	multi-exon	FALSE	canonical	2	45	junction_1	36.7786169759912	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATCCCCCAGTCACGG	NA	False	NA	NA	False	NA	NA	NA	33166365	33125489	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_33125544_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
ES_00024782	chr17	-	1752	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	0	0	0	0	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	-7	True	AATAAA	-29	NA	33166376	33143661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
ES_00024784	chr17	-	500	5	FSM	ENSMUSG00000024055.16	ENSMUST00000234683.2	500	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	65.4389028025379	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCTCATGACCTTGGACA	NA	False	NA	NA	False	NA	NA	NA	33166346	33149577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33149637_33151386_33151515_33151602_33151657_33165778_33165978_33166286
ES_00024787	chr17	-	3415	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	8	-16	8	16	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTGTATGTGTTTTA	2767	False	NA	0	True	NA	NA	NA	33252368	33235820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
ES_00024788	chr17	-	3544	4	FSM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.077477638554	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTGTGTTGTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	33474119	33458691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33461925_33462686_33462745_33462981_33463109_33473993
ES_00024789	chr17	-	6639	4	FSM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	5.43650214343336	4237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTGGTTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	33577852	33548315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33577707
ES_00024790	chr17	-	6794	5	FSM	ENSMUSG00000003929.12	ENSMUST00000235063.2	812	5	-14	-5968	-4	0	multi-exon	FALSE	canonical	2	6	junction_3	15.2540978100968	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTGGTTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	33577856	33548315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33577707
ES_00024791	chr17	-	3247	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	36	-624	0	624	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTGTGTGTATGTGTG	NA	False	NA	NA	False	AATAGA	-15	NA	33613579	33598604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
ES_00024794	chr17	-	2425	17	FSM	ENSMUSG00000059208.16	ENSMUST00000139302.8	2428	17	0	3	0	0	multi-exon	FALSE	canonical	0	0	junction_13	711.141860737891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5771	False	NA	-8	True	AATAAA	-13	NA	33904362	33865212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
ES_00024795	chr17	-	2471	16	FSM	ENSMUSG00000059208.16	ENSMUST00000148178.8	3934	16	1457	6	0	0	multi-exon	FALSE	canonical	0	0	junction_12	644.248999481826	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5756	False	NA	-8	True	AATAAA	-13	NA	33904377	33865212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
ES_00024796	chr17	-	2546	16	FSM	ENSMUSG00000059208.16	ENSMUST00000114385.9	2550	16	0	4	0	0	multi-exon	FALSE	canonical	0	0	junction_12	733.954748832197	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5767	False	NA	-8	True	AATAAA	-13	NA	33904366	33865212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
ES_00024799	chr17	-	2058	5	FSM	ENSMUSG00000079557.12	ENSMUST00000173015.8	1418	5	49	-689	0	689	multi-exon	FALSE	canonical	3	31	junction_1	109.184476918654	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTACAGCCCCTCATGGTA	2755	False	NA	NA	False	NA	NA	NA	33937565	33909799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33911178_33915010_33915221_33921986_33922183_33928718_33928947_33937519
ES_00024800	chr17	-	3114	5	FSM	ENSMUSG00000079557.12	ENSMUST00000172767.9	1398	5	30	-1746	0	1746	multi-exon	FALSE	canonical	3	227	junction_1	25.5196003103497	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAAGCTGGGTATGGTGG	2706	False	NA	NA	False	AATAAA	-18	NA	33937614	33908742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
ES_00024801	chr17	-	2651	4	FSM	ENSMUSG00000079557.12	ENSMUST00000173329.8	2566	4	66	-151	0	151	multi-exon	FALSE	canonical	3	268	junction_3	10.1434160364686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGGCTTGGTAGCCTTT	2755	False	NA	NA	False	NA	NA	NA	33937565	33913039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33915221_33921986_33922183_33928718_33928947_33937519
ES_00024803	chr17	-	5865	5	FSM	ENSMUSG00000077450.14	ENSMUST00000235046.2	5822	5	-55	12	-55	-12	multi-exon	FALSE	canonical	3	11	junction_4	253.00296440951	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAACTTGCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	33979092	33961469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979016
ES_00024804	chr17	-	6030	5	NNC	ENSMUSG00000077450.14	novel	6109	5	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_4	233.193589105704	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAACTTGCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	33979458	33961469	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968931_33979196
ES_00024805	chr17	-	6102	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	0	7	0	-7	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGCATTTTTGTCATGA	NA	False	NA	NA	False	NA	NA	NA	33979504	33961464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ES_00024806	chr17	-	853	3	FSM	ENSMUSG00000077450.14	ENSMUST00000174744.2	503	3	-157	-193	-111	193	multi-exon	FALSE	canonical	0	0	junction_2	316	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATAGTCATAGTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	33979615	33967738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33968035_33968755_33968894_33979196
ES_00024809	chr17	-	328	5	NNC	ENSMUSG00000067288.14	novel	382	4	NA	NA	0	58002	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8192.0966485998	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATCAGACAGGTATAGT	NA	False	NA	NA	False	NA	NA	NA	34043439	33979998	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33980042_34042023_34042091_34042166_34042305_34043272_34043321_34043407
ES_00024810	chr17	-	354	5	NNC	ENSMUSG00000067288.14	novel	392	4	NA	NA	0	58002	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8942.74187539817	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATCAGACAGGTATAGT	NA	False	NA	NA	False	NA	NA	NA	34043468	33979998	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33980043_34042023_34042091_34042170_34042305_34043272_34043321_34043407
ES_00024811	chr17	-	2977	7	FSM	ENSMUSG00000002289.17	ENSMUST00000002360.17	3308	7	264	67	-23	-67	multi-exon	FALSE	canonical	3	124	junction_1	6.14862224856557	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTTGAGTCCAACTTAG	NA	False	NA	NA	False	NA	NA	NA	34000540	33992790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999622_33999756_33999868_34000036
ES_00024812	chr17	-	392	4	FSM	ENSMUSG00000067288.14	ENSMUST00000087342.13	392	4	0	0	0	0	multi-exon	FALSE	canonical	3	4589	junction_1	7337.59253585413	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCCAGCAGCGTC	NA	False	NA	-11	True	AATAAA	-28	NA	34043536	34042009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34042091_34042170_34042305_34043272_34043321_34043407
ES_00024813	chr17	-	343	2	FSM	ENSMUSG00000067288.14	ENSMUST00000173879.8	342	2	0	-1	0	0	multi-exon	FALSE	canonical	3	22076	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCCAGCAGCGTC	NA	False	NA	-11	True	AATAAA	-28	NA	34043320	34042009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34042305_34043272
ES_00024814	chr17	-	372	3	FSM	ENSMUSG00000067288.14	ENSMUST00000173480.8	372	3	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	5274.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043439	34042023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34042091_34042166_34042305_34043272
ES_00024815	chr17	-	1445	1	FSM	ENSMUSG00000067288.14	ENSMUST00000234017.2	1443	1	0	-2	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043468	34042023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34042000_34043500
ES_00024816	chr17	-	382	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	2881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043536	34042023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
ES_00024817	chr17	-	2356	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	1	0	-1	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTGTTTTGCTTTTT	9693	False	NA	-8	True	AATAAA	-25	NA	34109635	34094633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
ES_00024818	chr17	-	478	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	0	-16	0	16	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGCGTGTGCCAGTGTAAG	1223	False	NA	11	True	AATAAA	-39	NA	34128183	34127139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34127561_34128126
ES_00024820	chr17	-	568	6	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	15411	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8847.34064903121	2221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGCGGTGGTGGCGCACG	NA	False	NA	NA	False	NA	NA	NA	34174634	34155561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_34155589_34170974_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ES_00024821	chr17	-	1198	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	6	-397	-6	397	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCTGGCCTCGAACTCA	NA	False	NA	NA	False	NA	NA	NA	34159311	34157397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
ES_00024822	chr17	-	586	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	21	-47	0	47	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTACACCTCTTGAGAT	NA	False	NA	32	True	NA	NA	NA	34159278	34157845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ES_00024823	chr17	-	685	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	34159305	34158331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34158638_34158721_34158793_34158997
ES_00024824	chr17	-	1586	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	0	-6	0	6	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTCTTCACCAGGCCCCC	NA	False	NA	4	True	AATAAA	-23	NA	34170462	34168876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34168900_34170500
ES_00024825	chr17	-	632	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCGTCTCAGTTTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34174634	34170973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
ES_00024826	chr17	-	715	6	FSM	ENSMUSG00000008668.16	ENSMUST00000234380.2	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	30	junction_3	10301.0144238322	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34172713_34172883_34174051_34174151_34174591
ES_00024827	chr17	-	560	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174651	34170972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ES_00024828	chr17	-	975	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	0	-1	0	-1	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCGTCTCAGTTTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	34174627	34170974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
ES_00024832	chr17	-	630	4	ISM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	3132	22	0	0	3prime_fragment	FALSE	canonical	3	61	junction_1	21.9139732185248	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTTCCAGAATCTGG	NA	False	NA	-26	True	AATAAA	-10	NA	34216131	34215012	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011
ES_00024833	chr17	-	1633	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	0	-14	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTTCCAGAATCTGG	NA	False	NA	-26	True	AATAAA	-10	NA	34219321	34215012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ES_00024834	chr17	-	637	2	FSM	ENSMUSG00000061232.17	ENSMUST00000173543.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAACTGTGGAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	34216131	34215322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34215629_34215800
ES_00024836	chr17	-	1742	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	12	280	12	12	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTCTCAGGGGG	NA	False	NA	14	True	NA	NA	NA	34243642	34240045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
ES_00024837	chr17	-	1124	8	ISM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	2	0	0	0	intron_retention	FALSE	canonical	3	114	junction_7	29.9400762067385	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247028	34245006	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596
ES_00024838	chr17	-	968	9	NIC	ENSMUSG00000073422.12	novel	965	9	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	13	junction_8	57.8748650106417	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247012	34245006	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246954
ES_00024839	chr17	-	970	9	FSM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	0	-5	0	5	multi-exon	FALSE	canonical	3	92	junction_8	37.2237743250198	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTTCTTGTGTCCAAGC	NA	False	NA	4	True	AATAAA	-28	NA	34247030	34245001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
ES_00024844	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250594	34247242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ES_00024845	chr17	-	2437	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	0	-4	0	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250622	34247242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
ES_00024846	chr17	-	1550	8	FSM	ENSMUSG00000024327.17	ENSMUST00000169397.9	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	197.419371296905	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGAGGTGACCTGTCCT	NA	False	NA	-73	True	NA	NA	NA	34250636	34247769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250237_34250521
ES_00024847	chr17	-	4532	14	FSM	ENSMUSG00000024335.21	ENSMUST00000154232.9	4520	14	0	-12	0	5	multi-exon	TRUE	canonical	3	14	junction_13	158.425425309877	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTAGTGAGATTTGTT	8283	False	NA	-4	True	AATAAA	-28	NA	34339385	34330991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579_34338875_34339168
ES_00024848	chr17	-	4662	13	FSM	ENSMUSG00000024335.21	ENSMUST00000025193.14	4657	13	0	-5	0	5	multi-exon	FALSE	canonical	3	100	junction_12	100.678634774216	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTAGTGAGATTTGTT	6094	False	NA	-4	True	AATAAA	-28	NA	34341574	34330991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34341135
ES_00024849	chr17	-	4380	13	NIC	ENSMUSG00000024335.21	novel	4483	13	NA	NA	-88	5	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	121.012023048217	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTAGTGAGATTTGTT	7695	False	NA	-4	True	AATAAA	-28	NA	34339973	34330991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34339816
ES_00024850	chr17	-	4795	14	NIC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	-7	5	intron_retention	FALSE	canonical	3	88	junction_10	145.754555786584	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTAGTGAGATTTGTT	6053	False	NA	-4	True	AATAAA	-28	NA	34341615	34330991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579_34338875_34341135
ES_00024858	chr17	-	1463	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	-387	-226	-73	3	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCCAGTCTCTCCCTCC	722	False	NA	-20	True	NA	NA	NA	34822737	34820061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
ES_00024860	chr17	-	1753	8	FSM	ENSMUSG00000015474.17	ENSMUST00000171376.8	1750	8	0	-3	0	1	multi-exon	TRUE	canonical	3	52	junction_2	8.14160391358572	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTGGCTTATTCCCAG	4217	False	NA	1	True	AATAAA	-18	NA	34846122	34835634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778
ES_00024862	chr17	-	1686	9	NIC	ENSMUSG00000015474.17	novel	1710	9	NA	NA	-164	1	combination_of_known_junctions	FALSE	canonical	2	13	junction_8	19.4148783153539	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTGGCTTATTCCCAG	9909	False	NA	1	True	AATAAA	-18	NA	34847177	34835634	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34847091
ES_00024864	chr17	-	318	5	FSM	ENSMUSG00000015451.17	ENSMUST00000162133.8	354	5	36	0	30	0	multi-exon	FALSE	canonical	1	3	junction_1	0.433012701892219	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTCGAGAAGATGGCAG	NA	False	NA	NA	False	NA	NA	NA	35030334	35028939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35028954_35029087_35029187_35029263_35029354_35030090_35030166_35030294
ES_00024865	chr17	-	806	5	FSM	ENSMUSG00000061207.12	ENSMUST00000161885.8	805	5	0	-1	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4457941563535	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5651	False	NA	-4	True	AATAAA	-16	NA	35055843	35042968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35055405_35055543_35055752
ES_00024866	chr17	-	1120	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5573	False	NA	-4	True	AATAAA	-16	NA	35055921	35042968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ES_00024868	chr17	-	4001	27	FSM	ENSMUSG00000040356.17	ENSMUST00000174887.8	3995	27	0	-6	0	1	multi-exon	FALSE	canonical	3	88	junction_19	16.7468534534615	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGGAGTATGGTAACTT	5323	False	NA	-22	True	AATAAA	-14	NA	35069168	35058218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
ES_00024872	chr17	-	396	4	FSM	ENSMUSG00000024371.15	ENSMUST00000127795.2	479	4	83	0	83	0	multi-exon	FALSE	canonical	3	12	junction_3	1.63299316185545	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGATAATTGCCCCAGGG	1767	False	NA	NA	False	NA	NA	NA	35083845	35083144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35083187_35083283_35083402_35083487_35083583_35083704
ES_00024873	chr17	-	779	2	FSM	ENSMUSG00000092203.8	ENSMUST00000174464.2	785	2	0	6	0	-1	multi-exon	FALSE	canonical	3	190	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTAAATAGACTTTTTC	7234	False	NA	NA	False	AATAAA	-13	NA	35170220	35169219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35169452_35169673
ES_00024874	chr17	-	947	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	0	-13	0	9	multi-exon	FALSE	canonical	3	110	junction_2	40	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTCACTTTGTGG	6044	False	NA	NA	False	AATAAA	-28	NA	35171410	35169204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35169452_35169673_35169824_35170860
ES_00024875	chr17	-	540	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	-8	-12	0	9	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTCACTTTGTGG	6022	False	NA	NA	False	AATAAA	-28	NA	35171432	35169204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
ES_00024876	chr17	-	759	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	0	-12	0	9	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTCACTTTGTGG	6022	False	NA	NA	False	AATAAA	-28	NA	35171432	35169204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
ES_00024877	chr17	-	593	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	-14	0	9	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTCACTTTGTGG	6010	False	NA	NA	False	AATAAA	-28	NA	35171444	35169204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
ES_00024878	chr17	-	443	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	3	-12	0	9	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTCACTTTGTGG	6010	False	NA	NA	False	AATAAA	-28	NA	35171444	35169204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
ES_00024882	chr17	-	2953	2	Intergenic	novelGene_1775	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	307	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTTTTATCAGGGAAG	260	False	NA	-10	True	NA	NA	NA	35219343	35215693	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_35218446_35219142
ES_00024883	chr17	-	3016	3	Intergenic	novelGene_1777	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	281	junction_2	13	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAAGGTTGTCTGTT	NA	False	NA	-26	True	NA	NA	NA	35219956	35215709	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_35218446_35219142_35219185_35219718
ES_00024884	chr17	-	616	4	FSM	ENSMUSG00000036185.10	ENSMUST00000173211.8	618	4	2	0	2	0	multi-exon	FALSE	canonical	3	47	junction_3	4.54606056566195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246633	35244934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419
ES_00024885	chr17	-	665	5	FSM	ENSMUSG00000036185.10	ENSMUST00000174037.8	665	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	14.8218588577816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246890	35244934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
ES_00024886	chr17	-	645	5	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	7	9	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	14.8218588577816	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAAGCCTTTGGTTT	NA	False	NA	NA	False	AATAAA	-26	NA	35246883	35244943	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246561_35246772
ES_00024888	chr17	-	591	5	FSM	ENSMUSG00000007035.16	ENSMUST00000172491.2	591	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.25999201277446	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAAGAAGAATTGGGGTTG	1995	False	NA	NA	False	NA	NA	NA	35265496	35263075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35263111_35263292_35263415_35264089_35264153_35264269_35264351_35265206
ES_00024889	chr17	-	690	3	FSM	ENSMUSG00000073413.10	ENSMUST00000172639.8	690	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	7	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGTAAGAAGACAAACACT	NA	False	NA	NA	False	NA	NA	NA	35297041	35290452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35290736_35293150_35293289_35296772
ES_00024890	chr17	-	930	7	FSM	ENSMUSG00000024387.14	ENSMUST00000173114.8	917	7	0	-13	0	13	multi-exon	TRUE	canonical	3	9	junction_6	341.027369380621	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTGCTGGGGTCGGG	NA	False	NA	6	True	AATAAA	-30	NA	35340405	35335158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340286
ES_00024891	chr17	-	970	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	-9	0	7	multi-exon	FALSE	canonical	3	826	junction_1	47.9780042195264	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTACTGTGTGTTGCTGGG	NA	False	NA	0	True	AATAAA	-24	NA	35340262	35335164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
ES_00024892	chr17	-	1051	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	-38	0	-38	0	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	35351064	35347972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
ES_00024893	chr17	-	6888	31	FSM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_20	122.598119434553	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGAAAGTCATGGGTGG	NA	False	NA	-1	True	AATAAA	-21	NA	35383873	35368051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
ES_00024894	chr17	-	6741	29	FSM	ENSMUSG00000024393.15	ENSMUST00000174805.2	6741	29	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_6	123.268104188407	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGGGGGAA	NA	False	NA	-13	True	AATAAA	-9	NA	35381945	35368063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369879_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847
ES_00024895	chr17	-	6873	31	NIC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_7	126.312839146832	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGGGGGAA	NA	False	NA	-13	True	AATAAA	-9	NA	35383873	35368063	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369879_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
ES_00024896	chr17	-	763	5	FSM	ENSMUSG00000024393.15	ENSMUST00000173558.2	763	5	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_4	32.2102468168128	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTCTGGAGTCTCACTT	NA	False	NA	-60	True	TATAAA	-36	NA	35369342	35368152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203
ES_00024898	chr17	-	1450	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	0	-3	0	3	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTCTCCTCTGTTTTTT	NA	False	NA	2	True	NA	NA	NA	35454768	35439147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
ES_00024899	chr17	-	1670	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	0	-5	0	5	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATCTAAGTCTGCTTT	9333	False	NA	0	True	AATAAA	-25	NA	35827721	35823625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
ES_00024900	chr17	-	1895	3	ISM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	11	-3	11	0	intron_retention	FALSE	canonical	3	75	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9383	False	NA	-5	True	AATAAA	-20	NA	35827671	35823630	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_35824082_35825370_35825918_35826774
ES_00024901	chr17	-	1609	4	NIC	ENSMUSG00000050410.16	novel	1665	4	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	19.7989898732233	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9341	False	NA	-5	True	AATAAA	-20	NA	35827713	35823630	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_35824082_35825370_35825918_35826774_35827328_35827655
ES_00024903	chr17	-	3813	25	FSM	ENSMUSG00000038838.16	ENSMUST00000165787.8	3803	25	11	-21	11	0	multi-exon	FALSE	canonical	0	0	junction_15	47.5613456203903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGGTCTCGTGAAGCGT	3101	False	NA	NA	False	AATAAA	-37	NA	35977144	35966525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864
ES_00024908	chr17	-	1681	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	0	-2	0	2	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGCTTCAGACGTCTGCC	NA	False	NA	1	True	AATAAA	-19	NA	35984631	35978619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
ES_00024909	chr17	-	3769	18	FSM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_16	10.4162502800285	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGGTGTATTTCCTGG	9047	False	NA	1	True	AATAAA	-35	NA	36011502	35992458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
ES_00024910	chr17	-	2654	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	0	-5	0	5	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCTGTGTGCTCATTCA	NA	False	NA	-2	True	AATAAA	-21	NA	36149198	36144807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ES_00024912	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208012	36203568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
ES_00024913	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208323	36203568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
ES_00024914	chr17	-	2085	5	FSM	ENSMUSG00000050705.16	ENSMUST00000146451.8	2081	5	0	-4	0	0	multi-exon	FALSE	canonical	3	307	junction_3	46.1756158594555	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGGCAGGTTTTCACG	NA	False	NA	-9	True	AATAAA	-13	NA	36208003	36203574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562
ES_00024915	chr17	-	1354	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	0	-14	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220938	36208486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ES_00024916	chr17	-	1445	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	7	0	7	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220960	36208486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ES_00024922	chr17	-	488	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174349.8	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	528.957313967772	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCTTGGTACCCATGGT	4348	False	NA	NA	False	NA	NA	NA	36227229	36221742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36221849_36222310_36222371_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ES_00024924	chr17	-	327	1	FSM	ENSMUSG00000049832.7	ENSMUST00000173786.2	327	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGACTCTCCTGCAAGGC	5653	False	NA	NA	False	NA	NA	NA	36246842	36246515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36246500_36246800
ES_00024925	chr17	-	3161	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	0	0	0	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280653	36267710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ES_00024927	chr17	-	787	7	FSM	ENSMUSG00000038762.16	ENSMUST00000174834.2	787	7	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_3	53.8745971884916	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGATCTGAGGGCCCTTG	NA	False	NA	NA	False	NA	NA	NA	36275164	36272592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36272716_36272877_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145
ES_00024928	chr17	-	1880	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	0	-2	0	2	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTCTCATTTCTCTGTT	NA	False	NA	1	True	AATAAA	-18	NA	36289863	36283430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
ES_00024929	chr17	-	2729	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	0	-2	0	2	multi-exon	FALSE	canonical	3	22	junction_3	38.4216374224502	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTCTCATTTCTCTGTT	NA	False	NA	1	True	AATAAA	-18	NA	36291128	36283430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
ES_00024932	chr17	-	2321	2	FSM	ENSMUSG00000067212.9	ENSMUST00000174161.2	2642	2	118	203	118	0	multi-exon	FALSE	canonical	2	5	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATGAATGAATGAATGAA	NA	False	NA	NA	False	NA	NA	NA	36343315	36340867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36341587_36341713
ES_00024934	chr17	-	836	5	FSM	ENSMUSG00000073406.11	ENSMUST00000185167.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	210.516626421763	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394832_36395051
ES_00024935	chr17	-	587	4	Fusion	ENSMUSG00000073406.11_ENSMUSG00000073402.12	novel	836	5	NA	NA	353	0	multi-exon	FALSE	canonical	3	70	junction_3	209.343418016107	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36478383	36391080	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_36391216_36391890_36392008_36392133_36392410_36478324
ES_00024937	chr17	-	461	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	0	-24	0	24	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTTTGGTCACCTA	NA	False	NA	30	True	NA	NA	NA	36568748	36566512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
ES_00024939	chr17	-	601	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	-22	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568735	36566536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
ES_00024940	chr17	-	751	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	0	-22	0	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568961	36566536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
ES_00024942	chr17	-	464	3	FSM	ENSMUSG00000024446.14	ENSMUST00000174824.2	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	710	junction_2	31	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCAGTGGTAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	36568747	36566835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36566962_36568333_36568599_36568674
ES_00024943	chr17	-	3204	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	5958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTGAGTTGCGTGGTA	NA	False	NA	-8	True	NA	NA	NA	36582459	36569764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
ES_00024945	chr17	-	1465	5	FSM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	19.421315609402	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTGTGTTTGTCAT	NA	False	NA	0	True	ATTAAA	-20	NA	36582275	36573496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500_36579959_36582228
ES_00024947	chr17	-	1599	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTTAAATACAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	37262605	37259247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_37260447_37260768_37260878_37262314
ES_00024948	chr17	-	749	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	-7	0	7	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGTGTGTTACTCTTA	NA	False	NA	-4	True	ACTAAA	-24	NA	37269374	37265240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
ES_00024949	chr17	-	719	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	-9	0	7	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGTGTGTTACTCTTA	NA	False	NA	-4	True	ACTAAA	-24	NA	37269425	37265240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
ES_00024951	chr17	-	2392	5	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	92	1844	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	41.9307464755876	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGGTATTGATTGTG	NA	False	NA	-1	True	NA	NA	NA	37282196	37278242	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732
ES_00024953	chr17	-	693	1	Genic_Genomic	ENSMUSG00000083534.2	novel	NA	NA	NA	NA	-604	-2113	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTAGTGTGGGTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	37282892	37282199	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_37282200_37282900
ES_00024954	chr17	-	865	4	FSM	ENSMUSG00000064308.11	ENSMUST00000039846.12	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	4.49691252107735	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAAATTTTGTGTGTTT	NA	False	NA	-20	True	ATTAAA	-29	NA	37292129	37288592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_37288999_37289360_37289439_37289542_37289826_37292031
ES_00024955	chr17	-	2360	6	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	0	279	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	104.148739790744	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTAAGTGAGACTGGAAAA	NA	False	NA	-4	True	TTTAAA	-5	NA	37300429	37294673	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396_37299673_37299826_37300097_37300320
ES_00024957	chr17	-	1776	1	FSM	ENSMUSG00000067189.6	ENSMUST00000172475.2	373	1	17	-1420	17	1420	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAAGAAAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	38024798	38023022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_38023000_38024800
ES_00024958	chr17	-	431	1	FSM	ENSMUSG00000092269.2	ENSMUST00000174655.2	2620	1	476	1713	476	-1713	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAATGCCAAGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	38153344	38152913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_38152900_38153300
ES_00024959	chr17	-	515	1	FSM	ENSMUSG00000117165.2	ENSMUST00000232791.2	177	1	1	-339	1	339	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGGCATCTCTCAGATG	NA	False	NA	NA	False	AATAAA	-8	NA	39948034	39947519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_39947500_39948000
ES_00024960	chr17	-	1660	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	282	0	282	0	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGATGTGTGAGTAGAACT	NA	False	NA	-1	True	AATAAA	-27	NA	41245656	41233941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
ES_00024961	chr17	-	5367	18	FSM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	0	-3	0	3	multi-exon	FALSE	canonical	3	147	junction_3	39.8587471351445	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTTTTTTCCTGGTT	NA	False	NA	0	True	AATAAA	-20	NA	43187280	43103838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
ES_00024962	chr17	-	1125	1	FSM	ENSMUSG00000023912.11	ENSMUST00000233442.2	1273	1	12	136	12	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGGGGGTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	43978011	43976886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_43976900_43978000
ES_00024966	chr17	-	366	2	FSM	ENSMUSG00000023932.10	ENSMUST00000232910.2	418	2	0	52	0	-52	multi-exon	FALSE	canonical	3	709	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTATGGAGAGAGCTGC	2380	False	NA	NA	False	NA	NA	NA	45744467	45738753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45738969_45744316
ES_00024969	chr17	-	1877	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	-71	-646	-71	646	multi-exon	TRUE	canonical	2	8	junction_7	6.20730313782869	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAGGAGGTTGACTGCTC	NA	False	NA	NA	False	NA	NA	NA	45785935	45759216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
ES_00024970	chr17	-	2521	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	-1	0	1	multi-exon	TRUE	canonical	3	9221	junction_4	988.252604347694	3135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	-23	True	AATAAA	-20	NA	45884197	45878699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
ES_00024972	chr17	-	2138	15	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-5	8986	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	688.124933038607	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATACCATAAAAACT	NA	False	NA	NA	False	NA	NA	NA	45906503	45887139	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_45887175_45896127_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ES_00024973	chr17	-	2062	14	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906469	45896128	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ES_00024974	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ES_00024975	chr17	-	1996	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906498	45896128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ES_00024976	chr17	-	2095	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ES_00024977	chr17	-	2126	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	645.50828557468	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATAGCTCTGTGCATCCT	NA	False	NA	-7	True	AATAAA	-12	NA	45910527	45896131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ES_00024978	chr17	-	2114	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	18	-5	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	684.125062098821	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATAGCTCTGTGCATC	NA	False	NA	-9	True	AATAAA	-10	NA	45910511	45896133	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ES_00024982	chr17	-	543	4	FSM	ENSMUSG00000023942.16	ENSMUST00000169729.8	543	4	0	0	0	0	multi-exon	FALSE	canonical	2	106	junction_3	1130.5094230282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTGCTCATCAATTGTAA	NA	False	NA	NA	False	NA	NA	NA	45910532	45900622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45900747_45900848_45901052_45901182_45901265_45910398
ES_00024984	chr17	-	616	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTCCTAGCAGGCTACAG	NA	False	NA	NA	False	NA	NA	NA	45912892	45912179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45912612_45912708
ES_00024986	chr17	-	3219	23	NIC	ENSMUSG00000036026.16	novel	3284	24	NA	NA	22	-4	combination_of_known_junctions	FALSE	canonical	3	63	junction_20	30.8694933524137	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTCTGGTTGGCAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	45997163	45971100	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45990162_45990243_45990457_45990641_45997042
ES_00024989	chr17	-	1011	11	FSM	ENSMUSG00000036026.16	ENSMUST00000145873.8	1011	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	57.181815291227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCGAGGCTGCGAGCAGG	NA	False	NA	NA	False	NA	NA	NA	45996899	45978639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45990162_45990243_45990457_45990641_45996841
ES_00024991	chr17	-	507	4	FSM	ENSMUSG00000036026.16	ENSMUST00000143907.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	86.5537726246266	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGGGGCATCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	45997046	45989888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45989928_45990162_45990243_45990457_45990641_45996841
ES_00024992	chr17	-	502	2	FSM	ENSMUSG00000094690.3	ENSMUST00000233108.2	518	2	16	0	16	0	multi-exon	FALSE	canonical	2	8	junction_1	0	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATCTGATTTCATCTA	NA	False	NA	NA	False	AATAGA	-15	NA	46044754	46043789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46044049_46044511
ES_00024993	chr17	-	2772	6	FSM	ENSMUSG00000023951.19	ENSMUST00000024747.14	2765	6	0	-7	0	7	multi-exon	FALSE	canonical	3	41	junction_1	191.124671353543	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTCTCCTTCTCTCCT	NA	False	NA	6	True	ATTAAA	-29	NA	46342741	46327911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46329806_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ES_00024994	chr17	-	3458	7	FSM	ENSMUSG00000023951.19	ENSMUST00000071648.12	3451	7	0	-7	0	7	multi-exon	FALSE	canonical	3	338	junction_2	72.4463402955748	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTCTCCTTCTCTCCT	NA	False	NA	6	True	ATTAAA	-29	NA	46343295	46327911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46329806_46331916_46332049_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ES_00024997	chr17	-	874	4	FSM	ENSMUSG00000023951.19	ENSMUST00000133605.8	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	338	junction_2	71.0602248487546	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATATCTGCTGCTAAATC	NA	False	NA	NA	False	NA	NA	NA	46335807	46329531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46329806_46331916_46332049_46334990_46335021_46335369
ES_00025000	chr17	-	3238	11	FSM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_7	5.44426303552648	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGCTTGCATACTTTT	7123	False	NA	-12	True	AATAAA	-15	NA	46513571	46482280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
ES_00025001	chr17	-	1314	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	0	0	0	0	multi-exon	TRUE	canonical	3	702	junction_8	54.719597723302	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558980	46554845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ES_00025002	chr17	-	2539	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_7	97.6076328982524	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5836	False	NA	-30	True	AATAAA	-18	NA	46593922	46568799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ES_00025003	chr17	-	2439	11	NIC	ENSMUSG00000012296.17	novel	2426	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	139.770848176578	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5839	False	NA	-27	True	AATAAA	-21	NA	46593919	46568796	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
ES_00025004	chr17	-	2446	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	0	-20	0	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATCCCCTTTTTGCT	5822	False	NA	-7	True	AATAAA	-41	NA	46593936	46568776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
ES_00025005	chr17	-	2530	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_8	146.995586598166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5845	False	NA	-30	True	AATAAA	-18	NA	46593913	46568799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575019_46575117_46575808_46575905_46593271_46593366_46593885
ES_00025006	chr17	-	2636	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	119.555098124686	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5839	False	NA	-30	True	AATAAA	-18	NA	46593919	46568799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575019_46575117_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ES_00025007	chr17	-	2318	9	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	128.985464297339	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5836	False	NA	-30	True	AATAAA	-18	NA	46593922	46568799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593885
ES_00025008	chr17	-	2582	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	0	-23	0	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATCCCCTTTTTGCT	5819	False	NA	-7	True	AATAAA	-41	NA	46593939	46568776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ES_00025009	chr17	-	2987	10	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	3	0	intron_retention	FALSE	canonical	3	80	junction_6	102.128580297487	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5838	False	NA	-33	True	AATAAA	-15	NA	46593920	46568802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ES_00025010	chr17	-	2418	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	-6	0	0	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5833	False	NA	-27	True	AATAAA	-21	NA	46593925	46568796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
ES_00025011	chr17	-	2437	10	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	2	3	junction_9	131.526179152552	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTAAGGCTTAATTTCT	5836	False	NA	-38	True	AATAAA	-10	NA	46593922	46568807	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593885
ES_00025012	chr17	-	2692	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	4	36	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	112.156620125682	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCATGTAGCCCTAGCT	5839	False	NA	29	True	NA	NA	NA	46593919	46568740	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ES_00025018	chr17	-	1989	10	FSM	ENSMUSG00000067144.8	ENSMUST00000087012.7	1989	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	10.8297714942322	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTAGTAGCCAGGACT	2817	False	NA	NA	False	NA	NA	NA	46749383	46743108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748922
ES_00025019	chr17	-	406	1	FSM	ENSMUSG00000091742.3	ENSMUST00000166852.3	520	1	71	43	71	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTTCCAGCAGAAGTACG	1248	False	NA	NA	False	NA	NA	NA	46750952	46750546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46750500_46751000
ES_00025023	chr17	-	1826	6	NIC	ENSMUSG00000015605.7	novel	2616	7	NA	NA	584	-14	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	30.5587957877924	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTTTTAAAATATTTAAC	NA	False	NA	-19	True	TATAAA	-4	NA	46866517	46859268	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46860105_46860361_46860439_46861826_46861947_46862456_46862719_46864485_46864753_46866253
ES_00025025	chr17	-	2941	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	-619	0	259	0	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956689	46941556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
ES_00025026	chr17	-	2310	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	3	0	-3	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	-5	True	AATAAA	-15	NA	46956948	46941552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
ES_00025028	chr17	-	1292	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	-3	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGGG	NA	False	NA	NA	False	NA	NA	NA	46985278	46978383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ES_00025030	chr17	-	2998	18	Fusion	ENSMUSG00000023971.10_ENSMUSG00000063576.13	novel	2100	12	NA	NA	0	0	multi-exon	FALSE	canonical	3	322	junction_17	38.5426560083751	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTCCCAGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	46991729	46978873	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ES_00025031	chr17	-	2100	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991830	46985475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ES_00025032	chr17	-	1957	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	0	-3	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991840	46985475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
ES_00025037	chr17	-	2998	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	40	0	40	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1040	False	NA	NA	False	AATAAA	-15	NA	47015997	46993916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
ES_00025038	chr17	-	1057	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	-18	-4	-18	4	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGTTTCTTCAGA	2961	False	NA	NA	False	AGTAAA	-27	NA	47040112	47036585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
ES_00025039	chr17	-	937	5	NIC	ENSMUSG00000002769.10	novel	1035	6	NA	NA	-46	-1	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	9.86154146165801	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGCCTGGTGTTTCT	2933	False	NA	NA	False	AGTAAA	-22	NA	47040140	47036590	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_47036898_47036986_47037109_47037531_47037643_47038190_47038319_47039871
ES_00025040	chr17	-	1976	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	0	-68	0	68	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCACGGTGACTGACCCT	NA	False	NA	NA	False	NA	NA	NA	47063140	47046562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ES_00025043	chr17	-	2616	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	-10	0	10	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCCCAGTCCCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	47093582	47084822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ES_00025044	chr17	-	2636	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	847.611873966433	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCGCCCAGTCCCCTGGG	NA	False	NA	NA	False	NA	NA	NA	47093598	47084823	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ES_00025045	chr17	-	1320	6	FSM	ENSMUSG00000063888.8	ENSMUST00000233192.2	1310	6	0	-10	0	10	multi-exon	FALSE	canonical	3	2131	junction_4	73.7276067697847	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTATCTCCTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	47093582	47088433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ES_00025046	chr17	-	458	4	FSM	ENSMUSG00000063888.8	ENSMUST00000233349.2	458	4	0	0	0	0	multi-exon	FALSE	canonical	1	22	junction_3	1077.13488271226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTGAGTGCTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	47093598	47089340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47089446_47090210_47090349_47091316_47091478_47093544
ES_00025047	chr17	-	612	3	FSM	ENSMUSG00000063888.8	ENSMUST00000233919.2	657	3	0	45	0	-45	multi-exon	FALSE	canonical	1	22	junction_2	1161	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGGGAGGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	47093563	47089916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47090349_47091316_47091478_47093544
ES_00025052	chr17	-	7720	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	-82	-5	-46	5	multi-exon	FALSE	canonical	3	27	junction_37	23.6319046780947	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCCTCCATCTTCTCCA	NA	False	NA	1	True	AATAAA	-22	NA	47321528	47239215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291414_47291514_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
ES_00025054	chr17	-	506	2	Intergenic	novelGene_1822	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	34	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGCAGAGGGCCACCG	NA	False	NA	72	True	NA	NA	NA	47403185	47400230	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_47400653_47403101
ES_00025057	chr17	-	2734	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	0	50	0	-50	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAAGTTGTTAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	47813217	47799024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ES_00025058	chr17	-	2793	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ES_00025059	chr17	-	6072	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	2	-4382	0	0	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ES_00025060	chr17	-	3854	7	FSM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	15.1180539605981	2878	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTTAAGACCCCACAATC	2341	False	NA	-6	True	AATAAA	-17	NA	47922417	47910255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831
ES_00025061	chr17	-	202	1	Intergenic	novelGene_1823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGAAGGAAGACAGACA	NA	False	NA	NA	False	NA	NA	NA	47958186	47957984	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_47958000_47958200
ES_00025063	chr17	-	594	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47997988_47998112_47998214_47998823
ES_00025064	chr17	-	1037	2	FSM	ENSMUSG00000033475.16	ENSMUST00000143156.2	1037	2	0	0	0	0	multi-exon	FALSE	canonical	3	4486	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47999311	47997664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47998214_47998823
ES_00025065	chr17	-	490	2	FSM	ENSMUSG00000096549.10	ENSMUST00000151540.2	490	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGTGTGACCATGCACC	NA	False	NA	NA	False	ATTAAA	-16	NA	48005661	48003140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48003405_48005435
ES_00025070	chr17	-	4172	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113262.2	3198	17	-339	-635	-170	0	multi-exon	FALSE	canonical	3	96	junction_11	19.4871752699051	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGTGTCACCAAGG	NA	False	NA	-2	True	ATTAAA	-18	NA	48235740	48178057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ES_00025071	chr17	-	3653	10	FSM	ENSMUSG00000023994.14	ENSMUST00000078800.13	3653	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_8	14.2837212013545	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATTTTTGGTGTTTGTT	NA	False	NA	-4	True	AATAAA	-26	NA	48716793	48693912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
ES_00025072	chr17	-	3656	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	0	-11	0	0	multi-exon	FALSE	canonical	3	12	junction_8	14.7832070227182	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATTTTTGGTGTTTGTT	NA	False	NA	-4	True	AATAAA	-26	NA	48716793	48693912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
ES_00025073	chr17	-	3643	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	64	-1	64	1	multi-exon	FALSE	canonical	3	22	junction_4	12.5492778676703	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGATTTTTGGTGTTT	NA	False	NA	-7	True	AATAAA	-23	NA	48716870	48693915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
ES_00025074	chr17	-	1420	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739958	48726258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48726662_48729968_48730534_48739506
ES_00025081	chr17	-	5566	22	FSM	ENSMUSG00000023923.11	ENSMUST00000024717.10	5435	22	-126	-5	0	5	multi-exon	TRUE	canonical	2	15	junction_3	5.14990698460791	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTTCTTCCAGTCACAT	NA	False	NA	NA	False	AATAAA	-25	NA	51486322	51040146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
ES_00025082	chr17	-	7657	11	FSM	ENSMUSG00000023927.16	ENSMUST00000152830.9	5993	11	1608	-3272	-716	-11	multi-exon	FALSE	canonical	3	34	junction_1	11.1821285987955	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAACATGAGCAACATT	NA	False	NA	NA	False	AATAAA	-19	NA	52120424	52043226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52118795
ES_00025083	chr17	-	3911	12	NIC	ENSMUSG00000023927.16	novel	6243	11	NA	NA	-42	237	combination_of_known_junctions	FALSE	canonical	3	5	junction_11	24.2592744469866	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCAGGGTTTGTCTGCT	NA	False	NA	NA	False	ATTAAA	-19	NA	52139742	52045684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_52047442_52049074_52049171_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52139497
ES_00025085	chr17	-	4128	12	NIC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	148	4	intron_retention	TRUE	canonical	2	16	junction_3	7.09440473277333	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTGGTTTTGCTGTGTG	NA	False	NA	0	True	ATTAAA	-18	NA	53770186	53705912	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
ES_00025093	chr17	-	4273	17	FSM	ENSMUSG00000024174.10	ENSMUST00000086876.7	3523	17	0	-750	0	750	multi-exon	FALSE	canonical	1	2	junction_7	6.91804705101086	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTGCTAGTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-6	NA	56019578	55958200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_55960519_55961766_55961873_55969462_55969555_55971316_55971406_55972647_55972784_55973411_55973618_55976739_55976897_55979830_55979894_55981051_55981141_55994788_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
ES_00025094	chr17	-	550	5	FSM	ENSMUSG00000024174.10	ENSMUST00000233301.2	1813	5	9	1254	5	-1254	multi-exon	FALSE	canonical	3	16	junction_3	2.54950975679639	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTGTCAGGCATCAATTA	NA	False	NA	NA	False	ATTAAA	-22	NA	56019619	56005347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
ES_00025095	chr17	-	2204	4	NNC	ENSMUSG00000057835.8	novel	2018	4	NA	NA	266	6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	9.67241208569794	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTGGATAGCTGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	56185664	56171885	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56173651_56175302_56175364_56175558_56175686_56185413
ES_00025096	chr17	-	2079	4	FSM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	-55	-6	-55	6	multi-exon	FALSE	canonical	3	17	junction_3	5.43650214343336	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTGGATAGCTGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	56185985	56171885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56173651_56175302_56175364_56175558_56175686_56185859
ES_00025097	chr17	-	529	1	FSM	ENSMUSG00000059912.5	ENSMUST00000074828.5	468	1	-24	-37	-24	37	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAAAACAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	56222894	56222365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56222400_56222900
ES_00025103	chr17	-	2949	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCGGCTCTTTCTTTTTT	6306	False	NA	NA	False	NA	NA	NA	56382028	56374044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ES_00025104	chr17	-	745	3	FSM	ENSMUSG00000019578.12	ENSMUST00000134441.2	745	3	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	30	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGCTCCAGTCTCATG	NA	False	NA	-17	True	AATAAA	-15	NA	56376434	56375535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56376109_56376183_56376315_56376393
ES_00025105	chr17	-	306	2	Antisense	novelGene_ENSMUSG00000002833.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	339	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTCTACAAAGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	56402534	56398687	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_56398939_56402479
ES_00025107	chr17	-	1928	9	FSM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	58	0	58	0	multi-exon	FALSE	canonical	2	6	junction_1	3.19912097301743	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTTTTGGAACTTGGG	1151	False	NA	NA	False	AATAAA	-20	NA	56424538	56418600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
ES_00025108	chr17	-	3767	17	FSM	ENSMUSG00000001227.13	ENSMUST00000001256.11	3736	17	-36	5	-36	-5	multi-exon	FALSE	canonical	2	8	junction_2	3.37036719067819	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCCCCTTGACTCTGGG	8315	False	NA	NA	False	AATAAA	-17	NA	56447379	56430089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56431918_56432332_56432392_56432516_56432595_56433216_56433367_56433449_56433633_56433939_56434090_56434477_56434610_56435249_56435468_56436407_56436497_56436972_56437093_56437705_56437797_56438112_56438215_56438522_56438586_56438742_56438804_56439497_56439622_56439715_56439869_56447213
ES_00025109	chr17	-	1671	7	NNC	ENSMUSG00000019579.14	novel	1710	6	NA	NA	0	50647	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.982098409358	6661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGCAAAAGGGTCATGGC	NA	False	NA	NA	False	NA	NA	NA	56490849	56432096	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56432125_56482739_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ES_00025110	chr17	-	1710	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	0	0	0	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACCACCTGAAGCCA	NA	False	NA	-29	True	NA	NA	NA	56490920	56482743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ES_00025112	chr17	-	5132	20	ISM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	-23	-456	-7	446	intron_retention	FALSE	canonical	3	120	junction_19	10.4521068400644	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACGTGGGTAAGCCGCT	NA	False	NA	NA	False	ATTAAA	-25	NA	56525912	56493360	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408
ES_00025116	chr17	-	3713	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	-68	0	68	multi-exon	FALSE	canonical	3	548	junction_7	40.8821102534533	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTTCTCAAAAGTAAATAC	NA	False	NA	NA	False	NA	NA	NA	56597511	56584407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ES_00025118	chr17	-	5613	29	FSM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	0	-5	0	0	multi-exon	FALSE	canonical	3	62	junction_28	67.8619077274443	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGAGTGCTCCTTAAT	NA	False	NA	0	True	ATTAAA	-21	NA	56769216	56719425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
ES_00025119	chr17	-	6835	33	NIC	ENSMUSG00000013236.18	novel	6855	33	NA	NA	-4	0	intron_retention	FALSE	canonical	3	62	junction_32	77.4089939461171	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGAGTGCTCCTTAAT	NA	False	NA	0	True	ATTAAA	-21	NA	56769220	56719425	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56732326_56732927_56733386_56733505_56734938_56735133_56735851_56736158_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
ES_00025120	chr17	-	6768	33	FSM	ENSMUSG00000013236.18	ENSMUST00000067538.6	6855	33	94	-7	0	0	multi-exon	FALSE	canonical	3	94	junction_23	73.3638194207472	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGAGTGCTCCTTAAT	NA	False	NA	0	True	ATTAAA	-21	NA	56783389	56719425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56732326_56732927_56733386_56733505_56734938_56735133_56735851_56736158_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
ES_00025121	chr17	-	5673	29	NIC	ENSMUSG00000013236.18	novel	6855	33	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_19	61.8340747979821	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGAGTGCTCCTTAAT	NA	False	NA	0	True	ATTAAA	-21	NA	56783512	56719425	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
ES_00025123	chr17	-	316	1	FSM	ENSMUSG00000013236.18	ENSMUST00000223691.2	687	1	496	-125	496	61	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACACCCTGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	56741189	56740873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56740900_56741200
ES_00025126	chr17	-	3277	21	FSM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_15	52.6718852899723	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891585	56869938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
ES_00025132	chr17	-	1090	10	FSM	ENSMUSG00000042625.17	ENSMUST00000155983.2	1090	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	47.2215686229278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAGAAGGTGCCAGGG	NA	False	NA	NA	False	AATGAA	-41	NA	56891562	56878267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
ES_00025134	chr17	-	839	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	-59	-25	-59	25	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTCAGCTTGTTACTCT	NA	False	NA	-7	True	NA	NA	NA	56916830	56914426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ES_00025135	chr17	-	2960	18	FSM	ENSMUSG00000041168.11	ENSMUST00000047226.10	2951	18	0	-9	0	9	multi-exon	FALSE	canonical	3	584	junction_15	77.1963747647298	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTCTCAGTGTCGCCGT	1571	False	NA	-3	True	AATAAA	-26	NA	56933887	56921287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926393_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
ES_00025137	chr17	-	2083	3	NNC	ENSMUSG00000054723.7	novel	371	3	NA	NA	126	6	at_least_one_novel_splicesite	TRUE	canonical	3	54	junction_1	5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTACCTTTTTTCCTGTTG	7694	False	NA	0	True	AATAAA	-22	NA	57023851	57020929	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_57021093_57021115_57022818_57023633
ES_00025141	chr17	-	3310	17	NIC	ENSMUSG00000024206.16	novel	3350	18	NA	NA	0	86	combination_of_known_junctions	TRUE	canonical	3	62	junction_16	78.7249960304858	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGACATTGATGCTTTCCG	NA	False	NA	85	True	TTTAAA	-14	NA	57137971	57082810	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57137882
ES_00025142	chr17	-	3535	18	FSM	ENSMUSG00000024206.16	ENSMUST00000002444.15	3350	18	-96	-89	-91	86	multi-exon	FALSE	canonical	3	81	junction_12	62.8192882463543	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGACATTGATGCTTTCCG	NA	False	NA	85	True	TTTAAA	-14	NA	57138104	57082810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
ES_00025143	chr17	-	3287	16	NIC	ENSMUSG00000024206.16	novel	3283	17	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_15	59.2522292126353	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCGTGTTTGTTC	NA	False	NA	-1	True	NA	NA	NA	57138109	57082896	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57137882
ES_00025144	chr17	-	3381	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	-91	-7	-91	7	multi-exon	FALSE	canonical	3	178	junction_12	29.2883695986991	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTGTTTGTTCATTCAGG	NA	False	NA	6	True	NA	NA	NA	57138104	57082889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
ES_00025145	chr17	-	3637	12	FSM	ENSMUSG00000024212.10	ENSMUST00000025053.10	3636	12	0	-1	0	1	multi-exon	FALSE	canonical	3	105	junction_9	16.3510052260045	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGCCTGCCTTCAATT	6034	False	NA	-2	True	AATAAA	-16	NA	57242415	57199609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768_57207297_57209562_57209689_57212711_57212856_57226899_57226983_57233991_57234173_57242262
ES_00025147	chr17	-	4006	19	NNC	ENSMUSG00000007670.11	novel	3978	18	NA	NA	0	60536	intron_retention	TRUE	non_canonical	0	0	junction_1	165.934577320754	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGGAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	57338488	57267514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_57267543_57328050_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826_57330937_57331010_57331172_57331246_57331493_57331788_57331892_57331979_57332079_57332307_57332407_57332495_57332671_57332879_57332938_57333842_57333915_57334048_57334099_57334816_57334857_57334955_57334995_57336041_57336139_57338147
ES_00025148	chr17	-	1876	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-134	-25	-134	25	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGCCGCCCTGGAGCC	NA	False	NA	19	True	AATAAA	-38	NA	57318422	57310379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ES_00025154	chr17	-	3373	10	FSM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	0	-11	0	11	multi-exon	FALSE	canonical	3	34	junction_6	5.45916377623922	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGTTTAAATTACATTC	NA	False	NA	4	True	AATAAA	-27	NA	57366863	57350699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57352664_57354185_57354337_57359681_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581_57363670_57365107_57365235_57366520
ES_00025155	chr17	-	598	4	FSM	ENSMUSG00000046329.15	ENSMUST00000171528.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	3.39934634239519	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTTTACCCATCAGTG	NA	False	NA	NA	False	CATAAA	-19	NA	57360582	57354050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57354337_57359681_57359850_57360240_57360349_57360546
ES_00025156	chr17	-	848	8	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1112	374	combination_of_known_junctions	TRUE	canonical	3	18	junction_2	6.23027499638758	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCATTTCAGCAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	57377685	57373494	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
ES_00025157	chr17	-	886	3	FSM	ENSMUSG00000079414.4	ENSMUST00000233454.2	1560	3	0	674	0	-9	multi-exon	FALSE	canonical	0	0	junction_2	0.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCCCCTTTTGCTCCTA	NA	False	NA	NA	False	NA	NA	NA	57412922	57399043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57399770_57410349_57410485_57412897
ES_00025158	chr17	-	2146	18	NNC	ENSMUSG00000005823.10	novel	2405	17	NA	NA	0	48070	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.7185623212915	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTCCAGTTCATCTC	NA	False	NA	NA	False	NA	NA	NA	57554663	57493564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_57493598_57541917_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ES_00025160	chr17	-	2166	16	FSM	ENSMUSG00000005823.10	ENSMUST00000232778.2	2166	16	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_11	32.8610542875436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGGGGAGGACCACCTG	NA	False	NA	-31	True	AATAAA	-18	NA	57554663	57541943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ES_00025161	chr17	-	2054	17	FSM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	10	0	-7	0	multi-exon	FALSE	canonical	3	88	junction_12	32.0784560686764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAATAAAGAAAAAGTG	NA	False	NA	-59	True	CATAAA	-13	NA	57554679	57541971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ES_00025162	chr17	-	792	1	FSM	ENSMUSG00000071052.5	ENSMUST00000095218.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	58146216	58145424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_58145400_58146200
ES_00025163	chr17	-	4042	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	35	36	35	-36	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTTGTGAATAATTAAAG	NA	False	NA	NA	False	AATAAA	-17	NA	59320332	59306648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
ES_00025165	chr17	-	4925	9	FSM	ENSMUSG00000023965.14	ENSMUST00000024761.13	4925	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	4.68874983337776	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAATAATTGAGCTGAAT	NA	False	NA	NA	False	NA	NA	NA	63807012	63364446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_63367407_63387415_63387559_63532019_63532097_63663742_63663874_63691939_63692048_63778402_63778535_63794706_63794965_63797759_63797883_63806019
ES_00025168	chr17	-	4510	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	0	-22	0	7	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACCCTATCACTTCTA	NA	False	NA	4	True	AATAAA	-37	NA	64638860	64587992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
ES_00025169	chr17	-	207	2	NNC	ENSMUSG00000045036.16	novel	1165	5	NA	NA	41365	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGCACACATCTTTAT	2762	False	NA	NA	False	NA	NA	NA	65702025	65686159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_65686174_65701832
ES_00025170	chr17	-	981	1	FSM	ENSMUSG00000117300.2	ENSMUST00000233888.2	570	1	1	-412	1	412	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2795	False	NA	NA	False	NA	NA	NA	65745691	65744710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_65744700_65745700
ES_00025171	chr17	-	3702	6	FSM	ENSMUSG00000024091.10	ENSMUST00000024897.10	3369	6	0	-333	0	333	multi-exon	FALSE	canonical	3	3309	junction_3	105.717737395387	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGTTAGTATTGGT	2963	False	NA	NA	False	AAAAAG	-30	NA	65920550	65884988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_65887843_65889574_65889749_65899285_65899367_65900434_65900539_65901896_65902050_65920214
ES_00025173	chr17	-	252	1	FSM	ENSMUSG00000117114.2	ENSMUST00000233942.2	252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	480	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGATGCTCACTGCCA	NA	False	NA	NA	False	NA	NA	NA	65968573	65968321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_65968300_65968600
ES_00025174	chr17	-	3784	11	NNC	ENSMUSG00000024096.18	novel	3811	10	NA	NA	42	90894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	211.416082642736	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTAAGAGTAACACAGGAAA	NA	False	NA	NA	False	NA	NA	NA	66191907	66064518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66064545_66155423_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
ES_00025175	chr17	-	3784	11	NNC	ENSMUSG00000024096.18	novel	3811	10	NA	NA	42	24948	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	211.416082642736	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGATAAAGCACTCACACAC	NA	False	NA	NA	False	NA	NA	NA	66191907	66130464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66130493_66155425_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
ES_00025176	chr17	-	3814	10	FSM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	0	-3	0	3	multi-exon	FALSE	canonical	1	202	junction_3	142.261973611371	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCTATTGTCCACTCTT	NA	False	NA	NA	False	AATAAA	-34	NA	66191949	66155409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
ES_00025177	chr17	-	3666	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	484	-351	-360	3	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCTATTGTCCACTCTT	NA	False	NA	NA	False	AATAAA	-34	NA	66192309	66155409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
ES_00025178	chr17	-	793	5	FSM	ENSMUSG00000024096.18	ENSMUST00000232848.2	793	5	0	0	0	0	multi-exon	FALSE	canonical	1	29	junction_4	259.848513561267	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCAGGGCCTGGGAGGCT	NA	False	NA	NA	False	NA	NA	NA	66166040	66156824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66165967
ES_00025180	chr17	-	4064	5	FSM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	18	4	18	-4	multi-exon	FALSE	canonical	3	222	junction_1	25.0636689253589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCATGTTTTTTATTA	8712	False	NA	-3	True	AATAAA	-15	NA	66258203	66230063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
ES_00025182	chr17	-	10813	13	FSM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	0	8	0	-8	multi-exon	FALSE	canonical	2	19	junction_10	19.1325783823184	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGGAATCTGCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	66384068	66272700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66277333_66279291_66279388_66283015_66283160_66286496_66286596_66289830_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
ES_00025183	chr17	-	1513	8	FSM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	22.2481368171974	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTTAAAAGAAAATTAAA	NA	False	NA	NA	False	AATACA	-12	NA	66384017	66294039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ES_00025186	chr17	-	943	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384034	66344133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
ES_00025187	chr17	-	1014	9	NNC	ENSMUSG00000024099.16	novel	927	9	NA	NA	-79	39337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.10054863146	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTATCAAATGGAAAGCC	5373	False	NA	NA	False	NA	NA	NA	66408633	66346295	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66346334_66386432_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
ES_00025188	chr17	-	1701	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	0	-4	0	4	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGGTAATAGTGCCGTGC	5452	False	NA	NA	False	AATAAA	-22	NA	66408554	66385628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
ES_00025189	chr17	-	510	5	ISM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	50	8765	0	0	5prime_fragment	FALSE	canonical	3	4079	junction_1	122.195284278895	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGAATACTTCATTTCT	5502	False	NA	7	True	NA	NA	NA	66408504	66394397	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
ES_00025192	chr17	-	4595	10	NIC	ENSMUSG00000052105.18	novel	5463	12	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	58.02830301342	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTCTTGGTGTCACCGT	8138	False	NA	-15	True	AATAAA	-19	NA	66685926	66643978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66685364
ES_00025195	chr17	-	5522	11	ISM	ENSMUSG00000052105.18	ENSMUST00000097291.10	7274	15	-758	10969	-758	11	5prime_fragment	FALSE	canonical	3	123	junction_9	30.9258791305922	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTACAGTTTTCTGATTCT	NA	False	NA	6	True	AATAAA	-30	NA	66757503	66654949	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ES_00025200	chr17	-	2069	6	FSM	ENSMUSG00000023460.14	ENSMUST00000070538.12	2069	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_3	22.1720544830649	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAATTTGCCGTGTGTTT	NA	False	NA	-4	True	AATAAA	-22	NA	66826724	66801506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66813027_66813089_66826342
ES_00025201	chr17	-	976	7	FSM	ENSMUSG00000033278.11	ENSMUST00000225688.2	1674	7	113	585	113	-585	multi-exon	FALSE	canonical	0	0	junction_2	1	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACGGGCTGGGCCACCGT	NA	False	NA	NA	False	AAAACA	-41	NA	67251324	67121461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_67121537_67124820_67124973_67197918_67198052_67226018_67226056_67227017_67227292_67247477_67247581_67251122
ES_00025202	chr17	-	5328	18	FSM	ENSMUSG00000024043.14	ENSMUST00000024840.12	5322	18	0	-6	0	6	multi-exon	FALSE	canonical	3	21	junction_17	5.76530609120275	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTTCTTTCAAATGCGT	NA	False	NA	NA	False	AATAAA	-24	NA	68311115	68149701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_68152813_68156047_68156113_68159905_68160031_68162428_68162486_68164410_68164525_68165148_68165347_68168267_68168351_68171457_68171621_68175945_68176024_68178683_68178776_68178877_68179044_68180017_68180161_68182568_68182654_68188430_68188521_68191713_68191804_68203043_68203262_68208276_68208501_68310889
ES_00025204	chr17	-	761	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	25	2453	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	9.90896059130321	245	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCCCACAGCCAATTCAT	NA	False	NA	-2	True	ATTAAA	-16	NA	69584178	69579903	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_69580313_69582162_69582295_69582786_69582887_69583120_69583191_69584128
ES_00025205	chr17	-	764	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCCAGAGGAACGTATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69582356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_69582902_69583120_69583191_69584054
ES_00025206	chr17	-	1126	2	FSM	ENSMUSG00000117069.2	ENSMUST00000233910.2	1128	2	0	2	0	-2	multi-exon	FALSE	canonical	2	5	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAGTTATAGCTCCGCT	NA	False	NA	NA	False	NA	NA	NA	69691203	69689200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_69689294_69690170
ES_00025207	chr17	-	224	2	Intergenic	novelGene_1860	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCTATGAACAGTGGAACA	NA	False	NA	NA	False	NA	NA	NA	70136105	70119203	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_70119231_70135908
ES_00025209	chr17	-	3141	3	FSM	ENSMUSG00000117231.2	ENSMUST00000233879.2	3157	3	0	16	0	-16	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCTCGAGAGCTGCAAAA	NA	False	NA	-37	True	NA	NA	NA	71113054	71105636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71108460_71112006_71112144_71112873
ES_00025211	chr17	-	1446	3	FSM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	419.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71156785	71151199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71152268_71153166_71153394_71156634
ES_00025212	chr17	-	1631	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158202	71151199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71152268_71153166_71153394_71157866
ES_00025213	chr17	-	1394	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	0	-6	0	0	multi-exon	FALSE	canonical	3	296	junction_2	292	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71160541	71151199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71152268_71153166_71153394_71160442
ES_00025217	chr17	-	1789	3	FSM	ENSMUSG00000097154.3	ENSMUST00000180468.2	1796	3	7	0	7	0	multi-exon	TRUE	canonical	1	24	junction_2	29	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTGTTGTTGCTACTT	NA	False	NA	NA	False	NA	NA	NA	71231984	71181346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71182923_71186892_71187002_71231880
ES_00025219	chr17	-	1802	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	0	135	0	-135	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCCTCCTAAGTCCATAT	1927	False	NA	NA	False	ATTAAA	-22	NA	71309549	71300785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
ES_00025220	chr17	-	1335	3	FSM	ENSMUSG00000024048.16	ENSMUST00000126529.2	1335	3	0	0	0	0	multi-exon	FALSE	canonical	3	3116	junction_2	53	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2316	False	NA	-19	True	ATTAAA	-14	NA	71309160	71301288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71301780_71303104_71303891_71309102
ES_00025227	chr17	-	1391	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905768	71895551	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_71895980_71897482_71897518_71898852_71898940_71904927
ES_00025228	chr17	-	220	1	FSM	ENSMUSG00000117275.2	ENSMUST00000232941.2	220	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGCATCTGATTCAAGA	NA	False	NA	NA	False	NA	NA	NA	71915937	71915717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71915700_71915900
ES_00025229	chr17	-	297	1	FSM	ENSMUSG00000117257.2	ENSMUST00000233573.2	920	1	545	78	545	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGCATCACAGCTACCT	NA	False	NA	NA	False	NA	NA	NA	74177800	74177503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74177500_74177800
ES_00025231	chr17	-	3163	9	FSM	ENSMUSG00000058704.10	ENSMUST00000233514.3	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	25.6502923959942	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTTTGTTTATTTG	NA	False	NA	NA	False	ATTAAA	-35	NA	74601858	74506030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
ES_00025232	chr17	-	1500	10	NIC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	80.0302411977675	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74602504	74507696	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686_74601765_74602407
ES_00025234	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623198	74606476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
ES_00025235	chr17	-	514	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	0	-2	0	0	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623389	74606476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
ES_00025239	chr17	-	392	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	246	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTCTCAGTGTTCCCC	NA	False	NA	-1	True	AATAAA	-18	NA	74834393	74826655	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_74826911_74830509_74830574_74834320
ES_00025241	chr17	-	2773	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	150	-106	0	106	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTTTTCTGGAAACTG	NA	False	NA	NA	False	NA	NA	NA	75858791	75843974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
ES_00025242	chr17	-	2819	7	FSM	ENSMUSG00000002017.11	ENSMUST00000234785.2	2809	7	0	-10	0	1	multi-exon	FALSE	canonical	3	156	junction_3	30.3296701084745	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGAGTTTTCTTTTAG	NA	False	NA	0	True	AATAAA	-23	NA	75858857	75844079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
ES_00025246	chr17	-	8195	18	FSM	ENSMUSG00000024077.16	ENSMUST00000145910.9	8629	18	434	0	434	0	multi-exon	FALSE	canonical	3	23	junction_11	6.14755134531242	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATGTGCTCCTAGGTGT	NA	False	NA	-10	True	AATAAA	-14	NA	79044191	78957341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550_78974688_78977179_78977324_78980004_78980116_78984710_78984847_78990256_78990393_78991658_78991827_78995020_78995100_78999822_78999897_79008278_79008383_79043682
ES_00025248	chr17	-	6475	36	FSM	ENSMUSG00000039414.11	ENSMUST00000097281.4	6388	36	-40	-47	0	47	multi-exon	TRUE	canonical	3	55	junction_23	13.6878912673552	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATTGTTAAAATTAAATC	NA	False	NA	NA	False	NA	NA	NA	79142793	79060279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79060766_79062639_79062854_79064291_79064444_79067844_79068070_79069428_79069696_79070361_79070507_79072756_79072885_79074308_79074564_79075794_79076033_79080966_79081147_79095633_79095703_79098863_79099046_79102523_79102776_79103250_79103491_79103812_79103958_79109041_79109212_79110800_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524_79141673_79142734
ES_00025250	chr17	-	6484	16	FSM	ENSMUSG00000091549.2_ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	-35	-2136	-35	364	multi-exon	FALSE	canonical	3	40	junction_8	9.77525219907679	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGAGTTCTGGTCGTCTG	NA	False	NA	78	True	NA	NA	NA	79190037	79157856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
ES_00025251	chr17	-	1165	1	FSM	ENSMUSG00000091549.2	ENSMUST00000167498.2	1165	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTACCCCTAACACC	NA	False	NA	NA	False	NA	NA	NA	79159385	79158220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79158200_79159400
ES_00025252	chr17	-	601	4	FSM	ENSMUSG00000024079.5	ENSMUST00000171852.2	704	4	0	103	0	-103	multi-exon	FALSE	canonical	3	45	junction_1	9.80929264637478	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCAGAAATATTTGCCCC	NA	False	NA	NA	False	NA	NA	NA	79189977	79181309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79181509_79183610_79183732_79185570_79185703_79189828
ES_00025253	chr17	-	764	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
ES_00025254	chr17	-	1191	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	-61	0	-61	0	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202590	79192325	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
ES_00025255	chr17	-	2951	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	13	-1	intron_retention	FALSE	canonical	3	19	junction_3	86.5678924313166	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAATTGGAACATTGCT	NA	False	NA	-17	True	ATTAAA	-15	NA	79202516	79192326	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136
ES_00025259	chr17	-	5848	19	FSM	ENSMUSG00000024070.16	ENSMUST00000119284.8	4743	19	39	-1144	0	0	multi-exon	FALSE	canonical	3	97	junction_5	36.6411106225551	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCCTATGTGAAAACCTT	NA	False	NA	1	True	AATAAA	-22	NA	79328206	79256833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270009_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
ES_00025260	chr17	-	4207	9	NIC	ENSMUSG00000024070.16	novel	5884	19	NA	NA	-28	23	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATACATAAAGTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	79328273	79277024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
ES_00025263	chr17	-	1956	2	NNC	ENSMUSG00000036533.10	novel	2265	2	NA	NA	10189	-272	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAAGTCTACATTTTAT	NA	False	NA	-4	True	AATATA	-25	NA	79650247	79641427	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_79643146_79650009
ES_00025264	chr17	-	3970	4	FSM	ENSMUSG00000059811.14	ENSMUST00000223273.2	3968	4	0	-2	0	0	multi-exon	FALSE	canonical	3	341	junction_1	6.23609564462324	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTTCTGAAATTAAA	NA	False	NA	-2	True	AATAAA	-18	NA	80163559	80155818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982
ES_00025266	chr17	-	3605	12	FSM	ENSMUSG00000059811.14	ENSMUST00000112437.8	3371	12	-189	-45	-189	43	multi-exon	TRUE	canonical	3	19	junction_11	103.456941975757	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTTTTTTTTTCTTTTT	3562	False	NA	41	True	ATTAAA	-24	NA	80203741	80155775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
ES_00025268	chr17	-	4684	13	NNC	ENSMUSG00000024095.16	novel	3116	13	NA	NA	0	1634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	159.429974178843	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGAAGAAAGAACCTGTGA	3529	False	NA	NA	False	NA	NA	NA	80369697	80335281	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356289_80357233_80357322_80358056_80358295_80360951_80361071_80369085
ES_00025269	chr17	-	3717	13	FSM	ENSMUSG00000024095.16	ENSMUST00000184635.8	3009	13	-170	-538	-63	538	multi-exon	FALSE	canonical	0	0	junction_9	159.429974178843	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTATATGATGTACACCT	3400	False	NA	NA	False	NA	NA	NA	80369826	80336377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
ES_00025270	chr17	-	5013	6	FSM	ENSMUSG00000024095.16	ENSMUST00000184889.2	4651	6	0	-362	0	362	multi-exon	FALSE	canonical	0	0	junction_2	229.055975691533	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGAGTCATATTTCTTT	3662	False	NA	NA	False	TTTAAA	-28	NA	80369564	80352115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
ES_00025271	chr17	-	3136	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	1	-1239	0	9	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCTTTGGAAGTATGAT	NA	False	NA	-2	True	AATAAA	-32	NA	80514732	80507499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
ES_00025272	chr17	-	3160	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	2	-1241	0	9	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCTTTGGAAGTATGAT	NA	False	NA	-2	True	AATAAA	-32	NA	80514732	80507499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
ES_00025273	chr17	-	2297	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	-9	0	9	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCTTTGGAAGTATGAT	NA	False	NA	-2	True	AATAAA	-32	NA	80514734	80507499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ES_00025274	chr17	-	2403	8	FSM	ENSMUSG00000024097.12	ENSMUST00000234095.2	2403	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	780.885394920407	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTAAGTTTGTTCAAT	NA	False	NA	-56	True	NA	NA	NA	80514286	80507553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80513995
ES_00025275	chr17	-	1991	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGTTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	80514736	80508258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
ES_00025276	chr17	-	2173	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	-1	-1185	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTAAGTTTGTTCAAT	NA	False	NA	-56	True	NA	NA	NA	80514733	80507553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ES_00025277	chr17	-	1047	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	-7	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ES_00025280	chr17	-	4737	24	FSM	ENSMUSG00000035051.16	ENSMUST00000086555.11	4737	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_22	13.7365159867987	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGTGTGGAGTAGACG	878	False	NA	-7	True	AATAAA	-13	NA	80597572	80545739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80585651_80585811_80588624_80588858_80597484
ES_00025283	chr17	-	4091	33	FSM	ENSMUSG00000024242.16	ENSMUST00000234133.2	4088	33	0	-3	0	-2	multi-exon	TRUE	canonical	3	111	junction_19	35.3232837516559	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCGTAGTTGCTGGTCA	NA	False	NA	-1	True	AATAAA	-18	NA	81035453	80887942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ES_00025284	chr17	-	4370	34	FSM	ENSMUSG00000024242.16	ENSMUST00000025089.9	4220	34	-150	0	-150	0	multi-exon	FALSE	canonical	3	139	junction_19	37.8671982269756	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	-4	True	AATAAA	-15	NA	81035672	80887945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80936714_80936778_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ES_00025286	chr17	-	4016	32	NIC	ENSMUSG00000024242.16	novel	4088	33	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_16	55.8979298721861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	-4	True	AATAAA	-15	NA	81035435	80887945	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ES_00025289	chr17	-	2239	11	FSM	ENSMUSG00000024246.10	ENSMUST00000234801.2	2239	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	48.9983673197383	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8149	False	NA	NA	False	ATTAAA	-22	NA	81372511	81333760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_81334400_81338052_81338444_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
ES_00025291	chr17	-	1043	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	-71	-87	-71	87	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACAATTCTCAAATTC	NA	False	NA	NA	False	AATAAA	-35	NA	82718319	82717276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_82717300_82718300
ES_00025293	chr17	-	1129	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	605.058858477605	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	9947	False	NA	-39	True	AATAAA	-7	NA	83821759	83809362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
ES_00025295	chr17	-	3539	2	FSM	ENSMUSG00000045817.9	ENSMUST00000060366.7	3530	2	0	-9	0	9	multi-exon	FALSE	canonical	3	151	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGTAATGGTTGGGGG	NA	False	NA	NA	False	AATAAA	-19	NA	84495375	84491349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_84494585_84495071
ES_00025296	chr17	-	7920	38	FSM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	-136	0	-47	0	multi-exon	TRUE	canonical	2	39	junction_31	15.529655412283	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACCATCTCACATTGGC	NA	False	NA	-39	True	AATAAA	-17	NA	84773680	84497503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
ES_00025297	chr17	-	7873	38	NNC	ENSMUSG00000024251.11	novel	7784	38	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	2	26	junction_37	16.4770908096234	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACCATCTCACATTGGC	NA	False	NA	-39	True	AATAAA	-17	NA	84773680	84497503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771883_84773521
ES_00025299	chr17	-	4393	38	FSM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_25	55.1799102769645	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATGTATTTTTTTAT	NA	False	NA	-6	True	AATAAA	-16	NA	85097986	85012674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_85012901_85013326_85013470_85014521_85014607_85015515_85015591_85017718_85017835_85017962_85018103_85020120_85020323_85024054_85024144_85030124_85030252_85033730_85033840_85033957_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
ES_00025300	chr17	-	4952	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	3	-2221	0	1161	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTGAAAGTCTTTT	NA	False	NA	1	True	ATTAAA	-15	NA	85397649	85369736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ES_00025303	chr17	-	1625	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234036.2	1625	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	17.1043854025802	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397659	85385486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ES_00025305	chr17	-	3530	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86452603	86292092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
ES_00025306	chr17	-	3671	22	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	29.0067628364393	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86452642	86292092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86451038_86451141_86452548
ES_00025311	chr17	-	1218	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	-13	0	13	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAGTGATTTAATAACTA	NA	False	NA	8	True	AATAAA	-34	NA	87754363	87740826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ES_00025312	chr17	-	842	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGACTGTGGACAGT	NA	False	NA	-135	True	NA	NA	NA	87754284	87741092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
ES_00025314	chr17	-	2151	5	FSM	ENSMUSG00000036438.15	ENSMUST00000150137.2	657	5	-7	-1487	0	5	multi-exon	FALSE	canonical	3	7049	junction_1	180.22954114129	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGAATCTGAGTGATTT	NA	False	NA	0	True	AATAAA	-26	NA	87754284	87740834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ES_00025315	chr17	-	1112	1	NIC	ENSMUSG00000050138.9	novel	1972	2	NA	NA	51066	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAACCACCAAAACAAACA	3856	False	NA	NA	False	AATAAA	-15	NA	88054356	88053244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_88053200_88054400
ES_00025317	chr17	-	4019	23	FSM	ENSMUSG00000005371.16	ENSMUST00000005504.15	4019	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_20	20.0647711505094	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGAATTTACCACC	NA	False	NA	0	True	AATAAA	-17	NA	88372719	88298286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984_88320115_88321833_88321979_88322826_88322909_88323015_88323141_88372436
ES_00025319	chr17	-	313	3	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	9.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTTGTTCTCACCGC	NA	False	NA	NA	False	AATGAA	-15	NA	88932910	88923936	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_88924018_88928723_88928829_88932783
ES_00025321	chr17	-	2362	10	FSM	ENSMUSG00000032937.6	ENSMUST00000035701.6	2360	10	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_1	0.496903994999953	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTTTTATGTTTCTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	89508103	89292377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_89293823_89295851_89296038_89309138_89309214_89309322_89309392_89316694_89316773_89318442_89318515_89352498_89352574_89354057_89354133_89404737_89404810_89507888
ES_00025322	chr17	-	1983	2	Genic_Genomic	ENSMUSG00000066878.6	novel	1988	1	NA	NA	5	61391	multi-exon	FALSE	canonical	0	0	junction_1	0	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAATGTGACCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	90217872	90154498	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_90154525_90215915
ES_00025324	chr17	-	6636	9	FSM	ENSMUSG00000055660.10	ENSMUST00000234990.2	6640	9	0	4	0	-4	multi-exon	FALSE	canonical	2	5	junction_8	34.5269369478383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTTTTTGAGTTTTTAA	NA	False	NA	64	True	AATAAA	-18	NA	95057320	95030021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95057164
ES_00025325	chr17	-	7036	9	NIC	ENSMUSG00000055660.10	novel	6640	9	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	71	junction_6	15.2151240547029	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTTTTTGAGTTTTTAA	NA	False	NA	64	True	AATAAA	-18	NA	95057369	95030021	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056813
ES_00025326	chr17	-	7063	9	NIC	ENSMUSG00000055660.10	novel	6640	9	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	27.2488531868774	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTTTTTGAGTTTTTAA	NA	False	NA	64	True	AATAAA	-18	NA	95057447	95030021	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056864
ES_00025327	chr17	-	2560	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057447	95034512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
ES_00025330	chr17	-	1146	4	NNC	ENSMUSG00000066057.8	novel	1853	4	NA	NA	9	14973	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	11.5854314646552	361	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAAACCTTATGAATGT	NA	False	NA	NA	False	NA	NA	NA	95142217	95125512	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_95126373_95127763_95127825_95128042_95128170_95142119
ES_00025331	chr17	+	1198	1	Intergenic	novelGene_1665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTATTACAAATAGACAGG	NA	False	NA	NA	False	NA	NA	NA	3131787	3132985	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_3131800_3133000
ES_00025332	chr17	+	342	1	Intergenic	novelGene_1666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGTTCTTATGTTAGTT	NA	False	NA	NA	False	NA	NA	NA	3139482	3139824	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_3139500_3139800
ES_00025333	chr17	+	282	1	Intergenic	novelGene_1670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	937	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGCTTTTACAAAAGTAAA	NA	False	NA	NA	False	CATAAA	-31	NA	6373761	6374043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6373800_6374000
ES_00025334	chr17	+	215	1	Intergenic	novelGene_1679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1870	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGCAGGAACTTTGCCCC	2310	False	NA	NA	False	NA	NA	NA	6818906	6819121	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6818900_6819100
ES_00025335	chr17	+	234	1	Intergenic	novelGene_1685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGCTGTGACATGGAAAT	NA	False	NA	NA	False	NA	NA	NA	6895722	6895956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6895700_6896000
ES_00025336	chr17	+	513	1	Intergenic	novelGene_1687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCAGGCAGGTACAGGCC	NA	False	NA	NA	False	NA	NA	NA	6913277	6913790	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6913300_6913800
ES_00025337	chr17	+	207	1	Intergenic	novelGene_1693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAAGTCTTGCCGCTGAG	5931	False	NA	NA	False	NA	NA	NA	12204936	12205143	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_12204900_12205100
ES_00025340	chr17	+	386	1	Intergenic	novelGene_1694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGAAATTTTAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	13384693	13385079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_13384700_13385100
ES_00025341	chr17	+	210	1	Intergenic	novelGene_1695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGCTCACCGCTCCCT	NA	False	NA	NA	False	NA	NA	NA	13530804	13531014	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_13530800_13531000
ES_00025342	chr17	+	243	1	Intergenic	novelGene_1696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTTCTTTTGCCTCC	NA	False	NA	NA	False	NA	NA	NA	13704629	13704872	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_13704600_13704900
ES_00025343	chr17	+	255	1	Intergenic	novelGene_1697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTTGTGAGACACCCA	NA	False	NA	NA	False	NA	NA	NA	13777761	13778016	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_13777800_13778000
ES_00025344	chr17	+	1419	1	Intergenic	novelGene_1699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCAGCCAATCGTTGGCC	NA	False	NA	NA	False	NA	NA	NA	14315676	14317095	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_14315700_14317100
ES_00025345	chr17	+	227	1	Intergenic	novelGene_1701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCTTTTTTAAAATTA	NA	False	NA	NA	False	AAAACA	-21	NA	15878369	15878596	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_15878400_15878600
ES_00025346	chr17	+	237	1	Intergenic	novelGene_1703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCACTTCCCCTCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	16990883	16991120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_16990900_16991100
ES_00025347	chr17	+	248	1	Intergenic	novelGene_1706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTAGTTGTTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	17150257	17150505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17150300_17150500
ES_00025348	chr17	+	211	1	Intergenic	novelGene_1712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAGATGATTTAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-1	NA	20319925	20320136	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_20319900_20320100
ES_00025350	chr17	+	210	1	Intergenic	novelGene_1714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	799	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTTAGATATGCTATTAG	NA	False	NA	NA	False	TTTAAA	-6	NA	22079098	22079308	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_22079100_22079300
ES_00025352	chr17	+	231	1	Intergenic	novelGene_1719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAGAACA	7	False	NA	NA	False	NA	NA	NA	23808073	23808304	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_23808100_23808300
ES_00025353	chr17	+	214	1	Intergenic	novelGene_1720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGAGAGAGAAAGA	1503	False	NA	NA	False	NA	NA	NA	23809644	23809858	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_23809600_23809900
ES_00025354	chr17	+	237	1	Intergenic	novelGene_1723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCAATTCTTTATGGCC	NA	False	NA	NA	False	NA	NA	NA	23986577	23986814	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_23986600_23986800
ES_00025355	chr17	+	216	1	Intergenic	novelGene_1729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGCCAGCTTCAAACTCA	NA	False	NA	NA	False	NA	NA	NA	25393403	25393619	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_25393400_25393600
ES_00025357	chr17	+	234	1	Intergenic	novelGene_1731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGAACATTTGGATGTC	NA	False	NA	NA	False	NA	NA	NA	26966010	26966244	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_26966000_26966200
ES_00025358	chr17	+	312	1	Intergenic	novelGene_1732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGTCTTATAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	27133430	27133742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_27133400_27133700
ES_00025360	chr17	+	255	1	Intergenic	novelGene_1734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACCCAGCTCCTCACTG	NA	False	NA	NA	False	NA	NA	NA	27508568	27508823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_27508600_27508800
ES_00025361	chr17	+	208	1	Intergenic	novelGene_1737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAATTTTAAAGGAAAGAAA	5082	False	NA	NA	False	NA	NA	NA	28147376	28147584	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_28147400_28147600
ES_00025362	chr17	+	349	1	Intergenic	novelGene_1738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCCACAATTTGAGGT	2726	False	NA	NA	False	NA	NA	NA	28283012	28283361	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_28283000_28283400
ES_00025363	chr17	+	259	1	Intergenic	novelGene_1740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTAAAGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	28372848	28373107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_28372800_28373100
ES_00025364	chr17	+	200	1	Intergenic	novelGene_1745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAGTATTAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	29265659	29265859	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29265700_29265900
ES_00025366	chr17	+	348	1	Intergenic	novelGene_1747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTTTCTTAAGGACCTA	9922	False	NA	NA	False	NA	NA	NA	29391674	29392022	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29391700_29392000
ES_00025367	chr17	+	230	1	Intergenic	novelGene_1748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAGTGTGTGTTGATA	NA	False	NA	61	True	NA	NA	NA	29577204	29577434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29577200_29577400
ES_00025368	chr17	+	217	1	Intergenic	novelGene_1752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACACACATATCTTAAACA	NA	False	NA	NA	False	NA	NA	NA	29832564	29832781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29832600_29832800
ES_00025369	chr17	+	208	1	Intergenic	novelGene_1757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCAGCCCCCGCTGGTC	3444	False	NA	NA	False	NA	NA	NA	31916176	31916384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_31916200_31916400
ES_00025370	chr17	+	245	1	Intergenic	novelGene_1761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTCTCTTTTGGGGTG	9726	False	NA	NA	False	NA	NA	NA	32516213	32516458	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_32516200_32516500
ES_00025371	chr17	+	303	1	Intergenic	novelGene_1762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4713	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCAGAGCACATCCTCC	NA	False	NA	NA	False	NA	NA	NA	32591694	32591997	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_32591700_32592000
ES_00025372	chr17	+	284	1	Intergenic	novelGene_1764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCGAGCTGGCTACCTCT	NA	False	NA	NA	False	NA	NA	NA	33211011	33211295	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_33211000_33211300
ES_00025374	chr17	+	247	1	Intergenic	novelGene_1770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCTGTGGTGTCCCCAG	4584	False	NA	NA	False	NA	NA	NA	34439547	34439794	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34439500_34439800
ES_00025375	chr17	+	2094	1	Intergenic	novelGene_1771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAAAGAAAATATGT	NA	False	NA	NA	False	AATAAA	-32	NA	34757207	34759301	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34757200_34759300
ES_00025376	chr17	+	263	1	Intergenic	novelGene_1778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2041	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATGGTTGTGAGTC	4829	False	NA	NA	False	NA	NA	NA	35225135	35225398	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35225100_35225400
ES_00025378	chr17	+	224	1	Intergenic	novelGene_1781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTTATTATGAGTTATT	254	False	NA	NA	False	NA	NA	NA	35400937	35401161	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35400900_35401200
ES_00025379	chr17	+	211	1	Intergenic	novelGene_1782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGACTCTATTAAAGCGT	NA	False	NA	NA	False	NA	NA	NA	35411118	35411329	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35411100_35411300
ES_00025381	chr17	+	259	1	Intergenic	novelGene_1783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATTGTGTTTCTTAACA	6219	False	NA	NA	False	NA	NA	NA	35656051	35656310	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35656100_35656300
ES_00025382	chr17	+	373	1	Intergenic	novelGene_1788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTCCATCTCTTTATGA	NA	False	NA	NA	False	AATACA	-33	NA	35761993	35762366	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35762000_35762400
ES_00025383	chr17	+	236	1	Intergenic	novelGene_1789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTGAATCTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	35798404	35798640	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35798400_35798600
ES_00025384	chr17	+	573	1	Intergenic	novelGene_1790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTTGCTTTCTTATAGA	7440	False	NA	NA	False	NA	NA	NA	35807157	35807730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35807200_35807700
ES_00025386	chr17	+	204	1	Intergenic	novelGene_1795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTCTTTATTTTCATCTT	8012	False	NA	NA	False	NA	NA	NA	36129772	36129976	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_36129800_36130000
ES_00025387	chr17	+	207	1	Intergenic	novelGene_1796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAGCTTTTTAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	36162233	36162440	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_36162200_36162400
ES_00025388	chr17	+	258	1	Intergenic	novelGene_1799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCACGTAAGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	36491137	36491395	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_36491100_36491400
ES_00025389	chr17	+	1241	1	Intergenic	novelGene_1801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCAACCTTTTTGATTG	9659	False	NA	NA	False	NA	NA	NA	37502064	37503305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_37502100_37503300
ES_00025391	chr17	+	287	1	Intergenic	novelGene_1802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGTGAGGGATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	40428386	40428673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_40428400_40428700
ES_00025392	chr17	+	4759	1	Intergenic	novelGene_1803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAACTCTAAATAGACTG	NA	False	NA	NA	False	NA	NA	NA	40490168	40494927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_40490200_40494900
ES_00025393	chr17	+	1915	1	Intergenic	novelGene_1804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	399	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTATTGTAAAGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	40891643	40893558	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_40891600_40893600
ES_00025394	chr17	+	281	1	Intergenic	novelGene_1806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATTCTCTACAATCC	NA	False	NA	NA	False	AATAAA	-22	NA	43723156	43723437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_43723200_43723400
ES_00025395	chr17	+	220	1	Intergenic	novelGene_1807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAACAGAGTTCTAGACA	517	False	NA	NA	False	AATAGA	-19	NA	45700101	45700321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_45700100_45700300
ES_00025396	chr17	+	328	1	Intergenic	novelGene_1813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCACTTCTTATTTTGA	NA	False	NA	NA	False	NA	NA	NA	46144519	46144847	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_46144500_46144800
ES_00025397	chr17	+	268	1	Intergenic	novelGene_1818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCAAAATAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	47094667	47094935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_47094700_47094900
ES_00025398	chr17	+	210	1	Intergenic	novelGene_1820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTTCTTTTTTATGACA	4115	False	NA	NA	False	NA	NA	NA	47145870	47146080	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_47145900_47146100
ES_00025400	chr17	+	235	1	Intergenic	novelGene_1824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTCTGCATTTGCTCC	NA	False	NA	NA	False	NA	NA	NA	47973875	47974110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_47973900_47974100
ES_00025401	chr17	+	250	1	Intergenic	novelGene_1825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTTAAAAGCAAGTT	325	False	NA	NA	False	NA	NA	NA	48248175	48248425	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_48248200_48248400
ES_00025402	chr17	+	205	1	Intergenic	novelGene_1828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAGCTAATAAATATGT	6326	False	NA	NA	False	TTTAAA	-1	NA	50602823	50603028	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_50602800_50603000
ES_00025404	chr17	+	362	1	Intergenic	novelGene_1831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1291	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGTGACTTTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-41	NA	54007999	54008361	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54008000_54008400
ES_00025405	chr17	+	262	1	Intergenic	novelGene_1833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTTAAAATATTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	54211890	54212152	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54211900_54212200
ES_00025406	chr17	+	1205	1	Intergenic	novelGene_1835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCACAGTTTGTATGAAG	NA	False	NA	NA	False	NA	NA	NA	54417856	54419061	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54417900_54419100
ES_00025407	chr17	+	599	1	Intergenic	novelGene_1836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	305	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTATTCCTTTTAATAAA	6023	False	NA	NA	False	NA	NA	NA	54426759	54427358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54426800_54427400
ES_00025408	chr17	+	297	1	Intergenic	novelGene_1838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGCAGCTAATTTC	NA	False	NA	NA	False	ATTAAA	-31	NA	55628947	55629244	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_55628900_55629200
ES_00025409	chr17	+	1466	1	Intergenic	novelGene_1839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	321	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATAGTTAATGTAAGTAT	NA	False	NA	NA	False	AATAAA	-42	NA	55798430	55799896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_55798400_55799900
ES_00025410	chr17	+	227	1	Intergenic	novelGene_1843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGATGTTTTGTTATTTTG	2458	False	NA	NA	False	NA	NA	NA	56737291	56737518	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_56737300_56737500
ES_00025411	chr17	+	216	1	Intergenic	novelGene_1844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGAGCCTTGGTAGAC	389	False	NA	NA	False	NA	NA	NA	56866726	56866942	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_56866700_56866900
ES_00025413	chr17	+	207	1	Intergenic	novelGene_1849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63745150	63745357	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_63745200_63745400
ES_00025415	chr17	+	204	1	Intergenic	novelGene_1850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTCTCTTTCTAAATT	NA	False	NA	NA	False	NA	NA	NA	66003496	66003700	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_66003500_66003700
ES_00025417	chr17	+	431	1	Intergenic	novelGene_1852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1439	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCATCACCTTTCAATCA	NA	False	NA	NA	False	NA	NA	NA	66410430	66410861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_66410400_66410900
ES_00025418	chr17	+	207	1	Intergenic	novelGene_1855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCTTCTTATAGCCTTCA	NA	False	NA	NA	False	NA	NA	NA	66441361	66441568	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_66441400_66441600
ES_00025419	chr17	+	213	1	Intergenic	novelGene_1857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTCGACTGCTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	66774218	66774431	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_66774200_66774400
ES_00025421	chr17	+	375	1	Intergenic	novelGene_1863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	71235613	71235988	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_71235600_71236000
ES_00025422	chr17	+	233	1	Intergenic	novelGene_1864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	305	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGAGGATGGGAATATGG	NA	False	NA	NA	False	NA	NA	NA	71270661	71270894	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_71270700_71270900
ES_00025423	chr17	+	234	1	Intergenic	novelGene_1865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTAGAAATTTAATTATTT	NA	False	NA	NA	False	AAGAAA	-34	NA	71842809	71843043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_71842800_71843000
ES_00025424	chr17	+	219	1	Intergenic	novelGene_1867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAACTGTTTGTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	73422778	73422997	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_73422800_73423000
ES_00025425	chr17	+	220	1	Intergenic	novelGene_1868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTCCCTGTACAGGG	NA	False	NA	NA	False	AATAAA	-9	NA	74447811	74448031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_74447800_74448000
ES_00025427	chr17	+	206	1	Intergenic	novelGene_1871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2853	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGGTTTATAGATGT	NA	False	NA	NA	False	NA	NA	NA	78802334	78802540	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_78802300_78802500
ES_00025428	chr17	+	227	1	Intergenic	novelGene_1872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTAAGGCTGGGCGT	NA	False	NA	NA	False	NA	NA	NA	80498393	80498620	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_80498400_80498600
ES_00025430	chr17	+	226	1	Intergenic	novelGene_1873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTCTTAGGACGGGGG	NA	False	NA	NA	False	NA	NA	NA	82576652	82576878	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_82576700_82576900
ES_00025433	chr17	+	246	1	Intergenic	novelGene_1875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGGTGTTCCCAGATGC	NA	False	NA	NA	False	NA	NA	NA	85136478	85136724	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_85136500_85136700
ES_00025435	chr17	+	220	1	Intergenic	novelGene_1877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTACTAAAAGATTCTCT	NA	False	NA	NA	False	NA	NA	NA	85460173	85460393	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_85460200_85460400
ES_00025436	chr17	+	204	1	Intergenic	novelGene_1878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGAAAATTTCCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	85746491	85746695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_85746500_85746700
ES_00025442	chr17	+	369	1	Intergenic	novelGene_1879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	251	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCTAGCCCCTCAGAGAC	NA	False	NA	NA	False	NA	NA	NA	89399332	89399701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_89399300_89399700
ES_00025443	chr17	+	301	1	Intergenic	novelGene_1880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGCCCAAAGTTTTCAGG	NA	False	NA	NA	False	NA	NA	NA	89787648	89787949	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_89787600_89787900
ES_00025447	chr17	+	372	1	Intergenic	novelGene_1882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTAAAAAAAAAAGAAATAG	NA	False	NA	NA	False	AATAAA	-18	NA	95113312	95113684	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_95113300_95113700
ES_00025448	chr17	+	5121	21	NNC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-176	13	at_least_one_novel_splicesite	TRUE	canonical	3	32	junction_8	44.5724129927919	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTATTTTTTTAACCTAC	9263	False	NA	24	True	AATAAA	-31	NA	3165070	3249147	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_3165694_3172327_3172390_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219604_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ES_00025449	chr17	+	4881	20	NNC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_9	34.9116812079359	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	9434	False	NA	11	True	AATAAA	-18	NA	3165241	3249134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227364_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ES_00025450	chr17	+	523	5	FSM	ENSMUSG00000046201.10	ENSMUST00000232048.2	544	5	0	21	0	-21	multi-exon	FALSE	canonical	3	36	junction_1	53.3877326733399	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGGTATTATTTTATTAA	9716	False	NA	NA	False	NA	NA	NA	3165523	3209599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_3165694_3172327_3172390_3195349_3195434_3198810_3198856_3209437
ES_00025451	chr17	+	5100	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	21	60039	combination_of_known_splicesites	FALSE	canonical	3	64	junction_20	27.9703414351702	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTGCAAGTCCTTTC	9737	False	NA	19	True	AATAAA	-13	NA	3165544	3309173	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
ES_00025452	chr17	+	347	2	NNC	ENSMUSG00000116852.2	novel	350	2	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCTTTCTGTTGTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	3608108	3610138	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_3608135_3609817
ES_00025454	chr17	+	4808	26	FSM	ENSMUSG00000023805.18	ENSMUST00000115790.8	4808	26	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_21	4.96322475815875	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGTTCTGACCCACT	NA	False	NA	NA	False	ATTAAA	-17	NA	6026014	6088830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6079974_6080110_6082971_6083085_6084089_6084199_6085685_6085835_6087658
ES_00025455	chr17	+	8154	10	ISM	ENSMUSG00000034377.11	ENSMUST00000039655.3	9687	14	63603	1	-30901	-1	3prime_fragment	FALSE	canonical	2	8	junction_3	8.20568908339411	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCAATTACATGTGTGCC	NA	False	NA	NA	False	AATAAA	-18	NA	6252025	6290902	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_6252110_6257165_6257333_6263658_6263884_6264909_6265145_6269642_6269788_6272578_6272724_6274426_6274521_6279609_6279754_6281986_6284500_6286500
ES_00025456	chr17	+	1003	1	FSM	ENSMUSG00000095869.2	ENSMUST00000179333.2	621	1	52	-434	52	434	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATATTTAGGCTGAAAG	7499	False	NA	NA	False	NA	NA	NA	6304229	6305232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6304200_6305200
ES_00025457	chr17	+	218	1	Intergenic	novelGene_1672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6462833	6463051	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6462800_6463100
ES_00025458	chr17	+	5192	3	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	273	junction_2	215.5	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTAGCTGAGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	6843144	6848646	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6843908_6844123_6848110_6848203
ES_00025459	chr17	+	5439	1	Intergenic	novelGene_1680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGTGGCGCCCAGAGTA	NA	False	NA	NA	False	NA	NA	NA	6843193	6848632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6843200_6848600
ES_00025460	chr17	+	1133	4	FSM	ENSMUSG00000000579.15	ENSMUST00000124894.2	675	4	-116	-342	17	342	multi-exon	FALSE	canonical	3	5304	junction_1	1851.44670160631	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6869086	6875290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472
ES_00025461	chr17	+	3236	3	FSM	ENSMUSG00000000579.15	ENSMUST00000138598.8	3250	3	0	14	0	-14	multi-exon	FALSE	canonical	3	5304	junction_1	1594.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGCAACTCGGGCAAGG	NA	False	NA	NA	False	NA	NA	NA	6869190	6877159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_6869236_6870885_6870928_6874010
ES_00025462	chr17	+	1373	7	FSM	ENSMUSG00000023809.11	ENSMUST00000231530.2	1650	7	277	0	277	0	multi-exon	FALSE	canonical	1	1	junction_6	69.423018917039	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCAAAGTGTGTGTCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	7528311	7553435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7552738
ES_00025463	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	460	junction_2	254.978920697378	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	2121	False	NA	4	True	AATAAA	-18	NA	8502593	8516493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
ES_00025464	chr17	+	270	1	Intergenic	novelGene_1690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCTTTTAGCCGGGC	NA	False	NA	NA	False	NA	NA	NA	8546957	8547227	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_8547000_8547200
ES_00025465	chr17	+	2498	7	FSM	ENSMUSG00000062327.11	ENSMUST00000177118.2	761	7	-988	-749	0	-5	multi-exon	FALSE	canonical	3	13	junction_4	10.7496769977314	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTTTGTGGATTATT	NA	False	NA	5	True	AATAAA	-15	NA	8653254	8661323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
ES_00025466	chr17	+	681	3	FSM	ENSMUSG00000062327.11	ENSMUST00000136922.8	681	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATACAACCCATTTGC	NA	False	NA	NA	False	AGTAAA	-36	NA	8653756	8655824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8654288_8654942_8655078_8655809
ES_00025471	chr17	+	519	1	ISM	ENSMUSG00000006818.6	ENSMUST00000232726.2	4057	7	28962	2587	1982	78	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCCCTGCCTGGAGACA	NA	False	NA	NA	False	NA	NA	NA	13255844	13256363	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_13255800_13256400
ES_00025472	chr17	+	2043	1	ISM	ENSMUSG00000006818.6	ENSMUST00000232726.2	4057	7	29631	394	2651	-394	mono-exon	FALSE	NA	NA	NA	NA	NA	392	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATGCCCGTTGGGATTT	NA	False	NA	NA	False	ATTAAA	-14	NA	13256513	13258556	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_13256500_13258600
ES_00025473	chr17	+	1117	1	FSM	ENSMUSG00000117051.2	ENSMUST00000233049.2	1168	1	-86	137	-86	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGAACCCATAGTTGC	NA	False	NA	NA	False	NA	NA	NA	13423842	13424959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_13423800_13425000
ES_00025478	chr17	+	2662	3	FSM	ENSMUSG00000068036.17	ENSMUST00000124922.2	2662	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	192	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGTCCCTTGGTTGT	NA	False	NA	27	True	ATTAAA	-16	NA	14119085	14126057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_14119721_14122791_14122877_14124115
ES_00025479	chr17	+	3571	9	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	2933	-2293	1902	1626	3prime_fragment	FALSE	canonical	0	0	junction_4	65.7680583566217	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCAGCCGCGGCTCCGCG	NA	False	NA	NA	False	NA	NA	NA	15201662	15213460	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
ES_00025481	chr17	+	2535	18	FSM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	62.8043041744542	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTGTCCCATTGCAT	NA	False	NA	NA	False	NA	NA	NA	15261469	15284112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ES_00025482	chr17	+	366	3	FSM	ENSMUSG00000036552.20	ENSMUST00000228518.2	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	129.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTCAGTATTCGCCTTG	NA	False	NA	NA	False	NA	NA	NA	15261901	15263361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15262004_15262509_15262679_15263266
ES_00025483	chr17	+	3148	17	NNC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_6	57.3311379182378	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15262509	15284485	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15269576_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
ES_00025485	chr17	+	1271	6	FSM	ENSMUSG00000036552.20	ENSMUST00000228803.2	1271	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	17.1043854025802	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTATGTTGCCTTTCAT	NA	False	NA	12	True	ATTAAA	-25	NA	15277012	15284492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
ES_00025486	chr17	+	2634	2	FSM	ENSMUSG00000014763.9	ENSMUST00000231318.2	3789	2	0	1155	0	-1155	multi-exon	FALSE	canonical	3	19	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTAGAGCTTTAAGCTA	NA	False	NA	NA	False	NA	NA	NA	15623665	15627960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15626198_15627858
ES_00025487	chr17	+	1661	7	FSM	ENSMUSG00000014767.18	ENSMUST00000118001.8	1652	7	-9	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	125.630963097832	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720162	15737689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
ES_00025488	chr17	+	521	1	FSM	ENSMUSG00000116550.2	ENSMUST00000232156.2	521	1	-13	13	-13	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGAACTGAGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	15818176	15818697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15818200_15818700
ES_00025490	chr17	+	211	2	Intergenic	novelGene_1704	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATCTTAGCATTCGATT	NA	False	NA	NA	False	NA	NA	NA	17117636	17124094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17117689_17123935
ES_00025491	chr17	+	2811	6	Fusion	ENSMUSG00000096696.2_ENSMUSG00000095990.2	novel	2667	4	NA	NA	-59086	0	multi-exon	TRUE	canonical	0	0	junction_4	55.549617460429	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17225288	17367093	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_17225539_17257537_17257665_17257906_17257968_17307505_17309378_17366172_17366285_17366704
ES_00025492	chr17	+	2722	4	Fusion	ENSMUSG00000096696.2_ENSMUSG00000095990.2	novel	2667	4	NA	NA	-67	0	multi-exon	FALSE	canonical	3	169	junction_3	41.6973220562984	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17284307	17367093	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_17284469_17362997_17363125_17363366_17363428_17364720
ES_00025493	chr17	+	611	1	ISM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	19980	0	19699	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGGCTTTACTTCA	NA	False	NA	10	True	AATAAA	-15	NA	17614550	17615161	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_17614600_17615200
ES_00025494	chr17	+	2510	5	Intergenic	novelGene_1710	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	3	junction_2	9.31396800509858	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTATATGTGCATATA	NA	False	NA	NA	False	NA	NA	NA	17724944	17734520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17725212_17727154_17727221_17730730_17730807_17731412_17731489_17732495
ES_00025499	chr17	+	2045	4	FSM	ENSMUSG00000023882.16	ENSMUST00000167749.2	822	4	-14	-1209	11	0	multi-exon	FALSE	canonical	3	11	junction_1	10.1980390271856	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCGTTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	21643505	21655416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_21643580_21647998_21648091_21650456_21650584_21653664
ES_00025500	chr17	+	201	1	Intergenic	novelGene_1713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAACATGGTTTTA	325	False	NA	NA	False	NA	NA	NA	21650960	21651161	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_21651000_21651200
ES_00025501	chr17	+	2666	6	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	38.4010416525385	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787288	21808961	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_21787508_21789277_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
ES_00025502	chr17	+	4537	6	FSM	ENSMUSG00000061544.14	ENSMUST00000065871.14	4525	6	-12	0	-1	0	multi-exon	FALSE	canonical	3	15	junction_1	72.3756865252413	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGGACTTGTATCATAG	NA	False	NA	11	True	AATAAA	-25	NA	21952692	21967949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_21952940_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
ES_00025504	chr17	+	2960	7	FSM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	-53	19	-16	-19	multi-exon	FALSE	canonical	3	27	junction_4	20.6881608655772	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGTTTATGAACTTAG	NA	False	NA	NA	False	NA	NA	NA	22643186	22675651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
ES_00025505	chr17	+	2434	5	NIC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	885	False	NA	35	True	AGTAAA	-19	NA	23819835	23829993	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
ES_00025507	chr17	+	3657	3	ISM	ENSMUSG00000023902.19	ENSMUST00000133749.2	548	4	-1691	-1322	284	0	intron_retention	FALSE	canonical	3	281	junction_2	0.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	300	False	NA	35	True	AGTAAA	-19	NA	23824772	23829993	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_23826619_23827081_23827140_23828240
ES_00025508	chr17	+	201	1	Intergenic	novelGene_1722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	947	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGATACATGTGTTATT	4610	False	NA	NA	False	AAAAAG	-1	NA	23833865	23834066	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_23833900_23834100
ES_00025509	chr17	+	597	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_1	165.748805928328	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAGGGAAAATGTTACC	NA	False	NA	-42	True	NA	NA	NA	23892600	23894148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
ES_00025511	chr17	+	1414	2	FSM	ENSMUSG00000023906.4	ENSMUST00000232719.2	1431	2	13	4	13	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACAATGTGTCTGATGT	NA	False	NA	1	True	AATAAA	-15	NA	23898358	23901412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_23898382_23900021
ES_00025512	chr17	+	1526	2	FSM	ENSMUSG00000023906.4	ENSMUST00000233364.2	1078	2	28	-476	28	-4	multi-exon	FALSE	canonical	3	11	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACAATGTGTCTGATGT	NA	False	NA	1	True	AATAAA	-15	NA	23898660	23901412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_23898796_23900021
ES_00025514	chr17	+	1689	5	FSM	ENSMUSG00000048992.10	ENSMUST00000061725.8	1689	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTTCCCCCTGCGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	24072516	24078750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24072901_24073352_24073516_24074944_24075226_24076212_24076377_24078053
ES_00025517	chr17	+	3548	20	FSM	ENSMUSG00000024130.17	ENSMUST00000133816.8	3758	20	16	194	16	-194	multi-exon	FALSE	canonical	3	9	junction_1	6.20561804261741	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGAGTAGCTGGGGCGT	NA	False	NA	NA	False	NA	NA	NA	24570939	24616563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24571226_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259
ES_00025521	chr17	+	5938	20	FSM	ENSMUSG00000033597.10	ENSMUST00000024958.9	5938	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_16	3.27755736356637	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGGCTCACACTCTT	7852	False	NA	NA	False	AATAAA	-15	NA	24707756	24727645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24708038_24714939_24714992_24715093_24715192_24715399_24715546_24715627_24715724_24715837_24715969_24717831_24717941_24718034_24718144_24718226_24718322_24718476_24718595_24719670_24719773_24719864_24719954_24720033_24720119_24720203_24720308_24721089_24721201_24721290_24721393_24722774_24722914_24722993_24724995_24725496_24725912_24726090
ES_00025522	chr17	+	823	1	FSM	ENSMUSG00000032855.7	ENSMUST00000228550.2	1050	1	221	6	105	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATTGAGGTGTATCCTG	NA	False	NA	NA	False	AATAAA	-13	NA	24769028	24769851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24769000_24769900
ES_00025527	chr17	+	1001	2	FSM	ENSMUSG00000044533.16	ENSMUST00000129984.2	965	2	-11	-25	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCTCTGCTGGATCACA	6378	False	NA	NA	False	NA	NA	NA	24939224	24940306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24939427_24939507
ES_00025528	chr17	+	1265	9	ISM	ENSMUSG00000002500.16	ENSMUST00000170239.9	1375	10	540	0	186	0	3prime_fragment	FALSE	canonical	3	9	junction_2	2.8613807855649	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	18	True	AATAAA	-18	NA	24947333	24955117	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
ES_00025529	chr17	+	2025	7	NNC	ENSMUSG00000024160.17	novel	1953	7	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	70.7248188403477	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAAATGCCCAAGCTGC	NA	False	NA	NA	False	ATTAAA	-7	NA	25105702	25111108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_25106220_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ES_00025530	chr17	+	2008	7	NNC	ENSMUSG00000024160.17	novel	1953	7	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	67.8052767530342	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAAATGCCCAAGCTGC	NA	False	NA	NA	False	ATTAAA	-7	NA	25105730	25111108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_25106231_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ES_00025532	chr17	+	937	2	FSM	ENSMUSG00000038880.14	ENSMUST00000138648.2	899	2	-38	0	-19	0	multi-exon	FALSE	canonical	3	669	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGACGAGTGCCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	25114070	25115090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25114679_25114761
ES_00025534	chr17	+	450	3	FSM	ENSMUSG00000073435.11	ENSMUST00000154321.2	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTACCAATCTGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	25115724	25116321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25115928_25116001_25116115_25116187
ES_00025535	chr17	+	5057	30	NIC	ENSMUSG00000024169.17	novel	6942	29	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	15.5658243289342	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAAAAGGCTGTAC	6847	False	NA	15	True	AATAAA	-20	NA	25235028	25318461	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_25235111_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
ES_00025536	chr17	+	4063	25	FSM	ENSMUSG00000036636.11	ENSMUST00000233633.2	4067	25	4	0	4	0	multi-exon	FALSE	canonical	2	12	junction_13	27.2258748966657	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTATTTTTATTTTGACT	NA	False	NA	20	True	NA	NA	NA	25352368	25381078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370729_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
ES_00025537	chr17	+	1439	9	FSM	ENSMUSG00000002279.20	ENSMUST00000137201.8	1424	9	-15	0	-2	0	multi-exon	TRUE	canonical	3	5	junction_1	39.6917812651435	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798145	25881697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25798354_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ES_00025538	chr17	+	1839	11	NIC	ENSMUSG00000002280.12	novel	2555	11	NA	NA	8	-9	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	76.6329563569095	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCTGGAAGGATCCACT	6971	False	NA	-3	True	AATAAA	-9	NA	25992800	26001756	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000705_26000989
ES_00025541	chr17	+	1960	9	FSM	ENSMUSG00000025736.16	ENSMUST00000152434.9	1951	9	-9	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	27.2855272992845	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCTGCTGGGGGAG	NA	False	NA	16	True	AATAAA	-18	NA	26048016	26050741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048971_26049036_26049112_26049181_26049273_26049409_26049483
ES_00025542	chr17	+	529	1	FSM	ENSMUSG00000057580.5	ENSMUST00000170379.2	372	1	-209	52	-209	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATCACAAAAAAGACATTT	3823	False	NA	NA	False	AATAAA	-19	NA	26120620	26121149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26120600_26121100
ES_00025544	chr17	+	2433	12	FSM	ENSMUSG00000024180.15	ENSMUST00000128597.3	2433	12	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_6	43.3616351739493	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGGCTTCTTTCTCCAG	NA	False	NA	12	True	AATAAA	-13	NA	26335604	26341321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
ES_00025545	chr17	+	3356	6	FSM	ENSMUSG00000024180.15	ENSMUST00000236993.2	3356	6	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_2	54.9749033650811	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATGAGTGGTCTTTTTT	NA	False	NA	15	True	NA	NA	NA	26336802	26342223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26336982_26337083_26337927_26338006_26338510_26339257_26339660_26340513_26340631_26340911
ES_00025546	chr17	+	1034	5	FSM	ENSMUSG00000024181.10	ENSMUST00000236166.2	1047	5	13	0	-7	0	multi-exon	FALSE	canonical	0	0	junction_2	700.577752644201	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342486	26345587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345265
ES_00025547	chr17	+	1376	5	NNC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	307	junction_2	480.243362785994	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_26342824_26343529_26344035_26344230_26344366_26344451_26344539_26345244
ES_00025549	chr17	+	1212	6	FSM	ENSMUSG00000024186.16	ENSMUST00000155072.8	1331	6	92	27	92	-25	multi-exon	FALSE	canonical	1	4	junction_1	1.46969384566991	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAGAAATAAAACTTTCAG	NA	False	NA	NA	False	NA	NA	NA	26426519	26430264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26426634_26426732_26426849_26426965_26427054_26427137_26427277_26429430_26429514_26429592
ES_00025551	chr17	+	3530	8	NIC	ENSMUSG00000024188.17	novel	2670	9	NA	NA	-5	-11	intron_retention	FALSE	canonical	3	531	junction_1	36.4159642049966	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTACTTTTATTATATGT	NA	False	NA	2	True	ATTAAA	-14	NA	26471967	26499682	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ES_00025552	chr17	+	1337	4	FSM	ENSMUSG00000048249.15	ENSMUST00000144221.2	1332	4	-5	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	8.64098759787715	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACAGTCCTGAAGATGA	1280	False	NA	NA	False	NA	NA	NA	26934623	26961933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26934749_26955789_26955958_26958516_26958643_26961015
ES_00025553	chr17	+	1863	7	FSM	ENSMUSG00000048249.15	ENSMUST00000142539.8	2674	7	0	811	0	-811	multi-exon	FALSE	canonical	2	4	junction_1	11.5758369027902	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGAGAGCACTGTTAGA	1340	False	NA	NA	False	ATTAAA	-11	NA	26934683	26982422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26934749_26958516_26958643_26961015_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299
ES_00025555	chr17	+	818	5	FSM	ENSMUSG00000024191.16	ENSMUST00000137989.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	37.8615900352851	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCAGAGGCCTGAGC	2086	False	NA	-81	True	NA	NA	NA	27000131	27011399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27000151_27002418_27002512_27008668_27008771_27009899_27010019_27010914
ES_00025556	chr17	+	878	2	FSM	ENSMUSG00000024191.16	ENSMUST00000131362.2	895	2	-5	22	-5	22	multi-exon	FALSE	canonical	3	102	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGATATCCCTTCGGTT	NA	False	NA	37	True	AATAAA	-37	NA	27009743	27011517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27010019_27010914
ES_00025557	chr17	+	5258	25	Fusion	ENSMUSG00000024301.11_ENSMUSG00000024193.9	novel	2522	15	NA	NA	0	0	multi-exon	TRUE	canonical	1	1	junction_10	128.999111754048	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGGCATGAGTCATTTT	NA	False	NA	3	True	AATAAA	-13	NA	27136146	27156863	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_27136260_27139770_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077_27151929_27152125_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155366_27155496_27155655_27155744_27155840_27156027_27156109_27156253
ES_00025558	chr17	+	1125	7	FSM	ENSMUSG00000048731.16	ENSMUST00000122106.9	1138	7	12	1	-4	0	multi-exon	FALSE	canonical	2	5	junction_2	8.62972897733308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27236978	27255351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27237145_27244310_27244434_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
ES_00025559	chr17	+	2950	1	FSM	ENSMUSG00000073430.6	ENSMUST00000232347.2	1833	1	-1153	36	-996	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAAATACTTTCTAGAG	8069	False	NA	NA	False	NA	NA	NA	27543012	27545962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27543000_27546000
ES_00025561	chr17	+	567	1	FSM	ENSMUSG00000116884.2	ENSMUST00000231475.2	1109	1	35	507	35	-507	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTCCAGCGCGTGATCA	NA	False	NA	NA	False	NA	NA	NA	27784120	27784687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27784100_27784700
ES_00025562	chr17	+	481	1	FSM	ENSMUSG00000116571.2	ENSMUST00000231767.2	769	1	75	213	75	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCACAGCACACGTACGT	2337	False	NA	NA	False	NA	NA	NA	27842545	27843026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27842500_27843000
ES_00025563	chr17	+	1530	9	ISM	ENSMUSG00000040276.16	ENSMUST00000097360.3	1800	10	16608	3	-2652	0	3prime_fragment	FALSE	canonical	2	4	junction_1	16.5586080332859	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAGAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-9	NA	27920778	27927630	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ES_00025566	chr17	+	547	1	FSM	ENSMUSG00000117216.2	ENSMUST00000233056.2	547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACTTTTAAAATGTCTC	2736	False	NA	NA	False	ATTAAA	-22	NA	28126776	28127323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28126800_28127300
ES_00025567	chr17	+	6849	24	FSM	ENSMUSG00000024219.17	ENSMUST00000088027.7	6838	24	-11	0	0	0	multi-exon	FALSE	canonical	3	18	junction_23	11.3514070645029	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATTTTGTTTGAATTATAA	4239	False	NA	14	True	CATAAA	-15	NA	28128279	28281573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28277721_28277821_28278267
ES_00025569	chr17	+	4485	11	FSM	ENSMUSG00000024219.17	ENSMUST00000232872.2	4485	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_10	9.02219485491197	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGATTTTGTTTGAATTAT	9029	False	NA	12	True	CATAAA	-13	NA	28261588	28281571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267
ES_00025570	chr17	+	214	1	Intergenic	novelGene_1739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACACAATCTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	28312700	28312914	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_28312700_28312900
ES_00025571	chr17	+	3350	13	FSM	ENSMUSG00000024220.15	ENSMUST00000145313.8	3350	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.7861688581892	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGCTCCTCCATCATTT	NA	False	NA	4	True	AATAAA	-16	NA	28396180	28424860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28396390_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ES_00025572	chr17	+	1944	10	FSM	ENSMUSG00000007570.17	ENSMUST00000088007.12	1942	10	-1	-1	0	0	multi-exon	FALSE	canonical	3	32	junction_5	38.9558154266543	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	353	False	NA	12	True	AATAAA	-14	NA	28532539	28545541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ES_00025573	chr17	+	1752	8	FSM	ENSMUSG00000007570.17	ENSMUST00000133527.9	1751	8	0	-1	0	0	multi-exon	FALSE	canonical	3	8	junction_7	62.0825651689682	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	353	False	NA	12	True	AATAAA	-14	NA	28532539	28545541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28545125
ES_00025574	chr17	+	1774	10	FSM	ENSMUSG00000007570.17	ENSMUST00000233381.2	1774	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	49.8013337121223	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTGGTGGCTCAGCCCT	585	False	NA	16	True	AATAAA	-18	NA	28532771	28545545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
ES_00025577	chr17	+	1140	4	FSM	ENSMUSG00000062252.10	ENSMUST00000080780.8	1313	4	91	82	-16	-82	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTATAATTTCTTTATC	8655	False	NA	NA	False	NA	NA	NA	28794717	28802485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28795387_28798904_28799142_28801953_28802000_28802297
ES_00025578	chr17	+	5645	14	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15726	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	93.4760039454483	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTGCGGTGCTGTTT	NA	False	NA	4	True	AATAAA	-13	NA	29004337	29057515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_29004515_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483_29056446_29056466
ES_00025580	chr17	+	4046	9	FSM	ENSMUSG00000063952.17	ENSMUST00000232705.2	4046	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	111.927431847604	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCTCCAGCAGGCATGC	NA	False	NA	NA	False	NA	NA	NA	29024902	29056347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036444_29036773_29037309_29037613_29040059_29040567_29054735_29054891_29055483
ES_00025584	chr17	+	682	5	FSM	ENSMUSG00000005936.20	ENSMUST00000153462.8	733	5	51	0	51	0	multi-exon	FALSE	canonical	1	2	junction_1	230.931808116595	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCACCCCCCACCCATGGG	NA	False	NA	NA	False	NA	NA	NA	29170974	29183095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29170998_29180387_29180662_29181783_29181887_29182224_29182346_29182934
ES_00025586	chr17	+	4010	4	FSM	ENSMUSG00000071172.14	ENSMUST00000147265.9	4010	4	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	325.271510519374	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGTAGTCAGTCGAGCG	NA	False	NA	15	True	AATAAA	-15	NA	29251622	29261217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29251761_29255214_29255423_29257463_29260268_29260357
ES_00025587	chr17	+	3373	3	FSM	ENSMUSG00000071172.14	ENSMUST00000150157.3	2110	3	0	-1263	0	0	multi-exon	FALSE	canonical	3	1932	junction_1	120.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29258491	29262347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29259788_29260180_29260268_29260357
ES_00025588	chr17	+	1125	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1609	False	NA	NA	False	NA	NA	NA	29275833	29278719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29275960_29276834_29276933_29277818
ES_00025589	chr17	+	1209	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	-136	0	-16	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	332	False	NA	12	True	AATAAA	-13	NA	29487782	29520496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ES_00025591	chr17	+	2622	16	FSM	ENSMUSG00000024013.16	ENSMUST00000024810.8	2640	16	0	18	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.894427190999916	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGACTGTTGTCACCCTA	NA	False	NA	NA	False	AATAAA	-20	NA	29579887	29598509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29580132_29582684_29582917_29583884_29583966_29584435_29584585_29585944_29586102_29586244_29586384_29586894_29586954_29587157_29587305_29588218_29588312_29592191_29592272_29592357_29592389_29592984_29593078_29593820_29593953_29595801_29595949_29597286_29597434_29597818
ES_00025593	chr17	+	1746	2	FSM	ENSMUSG00000024014.9	ENSMUST00000234270.2	867	2	-879	0	312	0	multi-exon	FALSE	canonical	3	1879	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCCTGAATCCATCC	NA	False	NA	NA	False	NA	NA	NA	29711501	29713938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29712873_29713563
ES_00025595	chr17	+	1913	1	FSM	ENSMUSG00000090083.12	ENSMUST00000234816.2	1763	1	-247	97	-247	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCGATTTCTGAGTTCGA	4023	False	NA	NA	False	NA	NA	NA	29852244	29854157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29852200_29854200
ES_00025596	chr17	+	6563	1	FSM	ENSMUSG00000117725.2	ENSMUST00000235695.2	6295	1	-273	5	-273	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATCTGATTATGTTCTG	800	False	NA	NA	False	NA	NA	NA	30795000	30801563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30795000_30801600
ES_00025597	chr17	+	6577	42	ISM	ENSMUSG00000033826.11	ENSMUST00000235507.2	13457	83	11	84769	-6	1660	5prime_fragment	FALSE	canonical	3	31	junction_2	8.98779660455654	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTCTTACTGTGGTTTC	211	False	NA	NA	False	AATGAA	-20	NA	30845920	30950518	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922_30913036_30914083_30914191_30919363_30919437_30920818_30921006_30923628_30923826_30925358_30925486_30927264_30927501_30929475_30929581_30931246_30931361_30932007_30932071_30934453_30934555_30936737_30936876_30937800_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054_30948217_30949987
ES_00025598	chr17	+	1261	8	FSM	ENSMUSG00000033826.11	ENSMUST00000237068.2	1261	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	8.31030832699942	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGGTTTTTAACTAAAA	NA	False	NA	NA	False	AATGAA	-12	NA	30882331	30903525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104
ES_00025601	chr17	+	2909	13	FSM	ENSMUSG00000042345.16	ENSMUST00000151620.9	2539	13	-51	-319	-51	319	multi-exon	FALSE	canonical	3	21	junction_1	6.05300659911163	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCGCTCAGGTCGTTTTC	NA	False	NA	8	True	CATAAA	-21	NA	31431035	31461383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31431206_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
ES_00025602	chr17	+	202	1	FSM	ENSMUSG00000024036.17	ENSMUST00000236467.2	2742	1	5	2535	5	-286	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTACATTTTGTTCTT	6253	False	NA	NA	False	NA	NA	NA	31526443	31526645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31526400_31526600
ES_00025604	chr17	+	1874	18	FSM	ENSMUSG00000041119.13	ENSMUST00000235639.2	1913	18	0	39	0	-29	multi-exon	FALSE	canonical	2	7	junction_16	17.6693976257468	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTAAATTCCACATTAAA	NA	False	NA	NA	False	NA	NA	NA	31633129	31695243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690857_31692131_31692254_31694898
ES_00025605	chr17	+	3244	3	FSM	ENSMUSG00000024038.18	ENSMUST00000191598.3	645	3	-80	-2519	-10	366	multi-exon	FALSE	canonical	3	11	junction_2	1845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTAGGTTAACTCACAG	NA	False	NA	NA	False	NA	NA	NA	31739078	31748738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31739236_31740542_31740667_31745775
ES_00025606	chr17	+	1990	1	FSM	ENSMUSG00000118239.2	ENSMUST00000236000.2	1692	1	-299	1	-299	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTAAGTGTCACAGTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	31785837	31787827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31785800_31787800
ES_00025607	chr17	+	304	3	FSM	ENSMUSG00000006705.14	ENSMUST00000237887.2	304	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	69.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAGGTTAATGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	31807450	31811122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_31807562_31809599_31809749_31811078
ES_00025611	chr17	+	2166	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13525	-1016	3736	175	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGATCACGGGAAGTCT	NA	False	NA	NA	False	NA	NA	NA	32700960	32712469	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
ES_00025616	chr17	+	839	1	FSM	ENSMUSG00000117373.2	ENSMUST00000234456.2	1702	1	856	7	856	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCTTAGAAATCTTCCA	NA	False	NA	NA	False	NA	NA	NA	33084428	33085267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33084400_33085300
ES_00025617	chr17	+	3020	4	FSM	ENSMUSG00000053390.17	ENSMUST00000087666.11	2950	4	-69	-1	-1	1	multi-exon	FALSE	canonical	3	36	junction_3	3.55902608401044	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGTGATCGGTCTTATT	NA	False	NA	NA	False	ATTAAA	-17	NA	33212101	33224432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_33212233_33220597_33220725_33220931_33220993_33221731
ES_00025619	chr17	+	4123	24	NIC	ENSMUSG00000024299.18	novel	4121	24	NA	NA	0	0	intron_retention	TRUE	canonical	3	10	junction_10	6.29309340266527	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCCTGACCGGGTG	NA	False	NA	5	True	AATAAA	-18	NA	33743183	33772744	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553_33750772_33756060_33756150_33756252_33756399_33756873_33756918_33757041_33757385_33757544_33757676_33762171_33762280_33762609_33762756_33762845_33762910_33763928_33764032_33764277_33764412_33764515_33764640_33767796_33767878_33767970_33768135_33768232_33768360_33768453_33768584_33769439_33769645_33769987_33770165_33770241_33770405_33772058
ES_00025623	chr17	+	2410	16	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	2995	2	2995	0	3prime_fragment	FALSE	canonical	1	1	junction_1	23.8854674552447	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGAAGTAAATTACTGAG	NA	False	NA	NA	False	AATAAA	-17	NA	33804571	33826736	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_33804654_33805089_33805258_33807076_33807163_33809801_33809884_33811894_33812002_33812994_33813094_33813196_33813342_33816914_33817030_33817116_33817287_33820024_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
ES_00025624	chr17	+	375	4	FSM	ENSMUSG00000041881.14	ENSMUST00000234470.2	366	4	-9	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3799.32529097821	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCGAGAGGTAAGGATCCT	4106	False	NA	NA	False	NA	NA	NA	34043577	34048781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34043655_34044574_34044625_34046775_34046883_34048640
ES_00025625	chr17	+	607	5	NNC	ENSMUSG00000041881.14	novel	528	4	NA	NA	0	9172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3528.86033302538	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGATTGAGTCATGTG	4147	False	NA	NA	False	NA	NA	NA	34043618	34066463	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072_34057280_34066299
ES_00025627	chr17	+	477	3	FSM	ENSMUSG00000002307.17	ENSMUST00000173028.8	477	3	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	304	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTCTTAAAGCTCACTC	5538	False	NA	NA	False	NA	NA	NA	34128387	34130397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34128438_34129404_34129646_34130211
ES_00025628	chr17	+	5513	9	Fusion	ENSMUSG00000051390.11_ENSMUSG00000024308.16	novel	2589	8	NA	NA	-38	0	multi-exon	FALSE	canonical	3	17	junction_1	71.5968531082198	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	NA	False	NA	12	True	AATAAA	-17	NA	34134834	34148265	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_34134939_34135790_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
ES_00025631	chr17	+	1212	8	FSM	ENSMUSG00000024319.19	ENSMUST00000172558.9	1212	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	31.3114701549657	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTCAGGATGTAATGCGA	NA	False	NA	NA	False	NA	NA	NA	34180084	34184694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34180219_34180586_34180743_34181040_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634
ES_00025634	chr17	+	1709	7	FSM	ENSMUSG00000037321.18	ENSMUST00000168351.8	3081	7	1366	6	505	-5	multi-exon	FALSE	canonical	0	0	junction_4	4.47213595499958	1388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTACTGTGGCTTCTCCC	NA	False	NA	NA	False	AATAAA	-9	NA	34410230	34416188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
ES_00025635	chr17	+	1225	7	NNC	ENSMUSG00000060586.12	novel	1669	6	NA	NA	-5	27542	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	73.2325064435186	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAACAAACTTCTAAAATCC	NA	False	NA	NA	False	AATAAA	-37	NA	34524835	34563190	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847_34535174_34563164
ES_00025636	chr17	+	361	2	Antisense	novelGene_ENSMUSG00000092406.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTCCACTATAAATACAC	NA	False	NA	NA	False	NA	NA	NA	34762732	34788860	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_34762943_34788709
ES_00025637	chr17	+	422	3	FSM	ENSMUSG00000015468.15	ENSMUST00000128314.2	796	3	0	374	0	-374	multi-exon	FALSE	canonical	3	95	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACCATCTAGGGACGT	NA	False	NA	NA	False	NA	NA	NA	34803541	34804252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34803606_34803754_34803825_34803964
ES_00025640	chr17	+	3960	26	NIC	ENSMUSG00000013787.16	novel	3746	27	NA	NA	7	0	combination_of_known_junctions	TRUE	canonical	3	35	junction_12	97.0906051067764	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTCTGGTGATTGTT	7162	False	NA	15	True	AATAAA	-16	NA	35117936	35133023	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125928_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ES_00025643	chr17	+	211	1	Intergenic	novelGene_1779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAGAAAGGAAGAAAAGAAA	2029	False	NA	NA	False	NA	NA	NA	35253254	35253465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35253300_35253500
ES_00025644	chr17	+	1364	4	FSM	ENSMUSG00000007041.10	ENSMUST00000172599.2	843	4	0	-521	0	521	multi-exon	TRUE	canonical	3	1087	junction_3	59.6452475521358	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATCACTGCCAAATGTAC	4160	False	NA	NA	False	NA	NA	NA	35271425	35275238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35271521_35271756_35271883_35272008_35272116_35274202
ES_00025646	chr17	+	1043	4	FSM	ENSMUSG00000092586.9	ENSMUST00000173207.8	598	4	-18	-427	-18	2	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTTTATTGTTAGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	35284345	35289028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35284427_35286302_35286421_35287842_35287954_35288295
ES_00025648	chr17	+	525	2	FSM	ENSMUSG00000007036.16	ENSMUST00000173579.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCTGAAGACCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	35318906	35319671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35319375_35319614
ES_00025650	chr17	+	3792	24	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_23	200.549453192482	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCCTGGCTCCTTTGCC	8538	False	NA	6	True	AATAAA	-7	NA	35354203	35366272	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ES_00025651	chr17	+	3896	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	434	junction_1	113.385261828864	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8538	False	NA	15	True	AATAAA	-16	NA	35354203	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00025653	chr17	+	3582	24	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_4	213.325766839666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8850	False	NA	15	True	AATAAA	-16	NA	35354515	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00025654	chr17	+	3536	24	FSM	ENSMUSG00000024392.18	ENSMUST00000173550.8	3536	24	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	237.913877763602	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCGAGTACCTTTTCTT	9054	False	NA	30	True	AATAAA	-31	NA	35354719	35366296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35354790_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ES_00025655	chr17	+	3863	26	NIC	ENSMUSG00000024392.18	novel	3611	24	NA	NA	50	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	169.312964654217	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	9104	False	NA	15	True	AATAAA	-16	NA	35354769	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354981_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00025659	chr17	+	2650	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-57	-11	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	32.5386116125864	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAATAGTGTTGCCTGG	4375	False	NA	0	True	AATAAA	-2	NA	35827939	35841882	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_35828009_35829047_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ES_00025660	chr17	+	2383	2	NNC	ENSMUSG00000039518.8	novel	2678	2	NA	NA	-8980	-165	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTAGTACACCTC	6846	False	NA	106	True	NA	NA	NA	35854044	35867912	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_35854073_35865557
ES_00025661	chr17	+	2619	2	FSM	ENSMUSG00000039518.8	ENSMUST00000044804.8	2678	2	46	13	46	-13	multi-exon	FALSE	canonical	1	1	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATTGAGCTGACAACCGA	1709	False	NA	NA	False	AATAAA	-3	NA	35863070	35868064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35863183_35865557
ES_00025662	chr17	+	206	2	Intergenic	novelGene_1793	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2043	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATAGGCCGGGCGTGGT	NA	False	NA	NA	False	NA	NA	NA	36065460	36108671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_36065519_36108523
ES_00025663	chr17	+	2434	2	ISM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	1261	-799	1261	0	3prime_fragment	FALSE	canonical	3	267	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	6018	False	NA	24	True	AATAAA	-18	NA	36173638	36176294	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_36175181_36175402
ES_00025664	chr17	+	2543	4	FSM	ENSMUSG00000034595.18	ENSMUST00000144382.8	2536	4	-7	0	-7	0	multi-exon	FALSE	canonical	1	2	junction_1	38.7928974026031	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCTAAGGAAGTGCTTCG	8889	False	NA	-89	True	NA	NA	NA	36176509	36186384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36176587_36178121_36179678_36184617_36184832_36185688
ES_00025665	chr17	+	4290	19	FSM	ENSMUSG00000039220.17	ENSMUST00000087210.7	4222	19	-66	-2	-66	0	multi-exon	FALSE	canonical	3	118	junction_1	14.6080478411181	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	28	True	AATAAA	-28	NA	36228021	36243175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ES_00025668	chr17	+	2112	4	FSM	ENSMUSG00000036492.13	ENSMUST00000040498.12	1579	4	-106	-427	-106	427	multi-exon	FALSE	canonical	2	2	junction_1	1.4142135623731	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGTTTTGCTGATTTCT	6751	False	NA	NA	False	AATAAA	-18	NA	37253703	37259305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37254343_37256065_37256089_37256295_37256388_37257947
ES_00025670	chr17	+	6725	20	NIC	ENSMUSG00000024462.18	novel	5248	23	NA	NA	-20	0	intron_retention	FALSE	canonical	3	39	junction_7	19.3446650651283	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACTGTCCTGTGAACTG	NA	False	NA	40	True	AATAAA	-28	NA	37356837	37385196	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ES_00025671	chr17	+	223	2	FSM	ENSMUSG00000024462.18	ENSMUST00000174826.2	237	2	0	14	0	-14	multi-exon	FALSE	canonical	3	45	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCACGTCTCCTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	37357090	37357718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37357182_37357586
ES_00025673	chr17	+	1180	12	FSM	ENSMUSG00000038954.15	ENSMUST00000127798.8	1180	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	31.9782984264006	597	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGAGTGGCCTGCTTT	NA	False	NA	22	True	AATAAA	-23	NA	45088282	45430173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352194_45359168_45359280_45430029
ES_00025674	chr17	+	1616	11	FSM	ENSMUSG00000023938.9	ENSMUST00000232693.2	2956	11	93	1247	93	-1247	multi-exon	TRUE	canonical	3	171	junction_7	21.6370053380776	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGCCATGCAGTGACC	NA	False	NA	NA	False	NA	NA	NA	45826636	45830522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438
ES_00025675	chr17	+	2326	3	FSM	ENSMUSG00000037089.12	ENSMUST00000224559.2	2326	3	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_2	19	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTGTTTTGGTTGGCA	NA	False	NA	8	True	ATTAAA	-18	NA	45874889	45878595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_45875700_45875850_45876006_45877234
ES_00025677	chr17	+	510	2	FSM	ENSMUSG00000023939.8	ENSMUST00000148537.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTTGTGTGAGCAGAG	NA	False	NA	-58	True	NA	NA	NA	46006341	46009326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46006499_46008973
ES_00025679	chr17	+	200	1	Intergenic	novelGene_1814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCACCACTCAGTTTGGA	NA	False	NA	NA	False	AAAAAG	-2	NA	46485869	46486069	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_46485900_46486100
ES_00025680	chr17	+	3387	16	FSM	ENSMUSG00000002763.17	ENSMUST00000144964.8	3383	16	-4	0	-4	0	multi-exon	TRUE	canonical	3	74	junction_1	12.537942414926	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTGTGAGAGGTTGC	NA	False	NA	11	True	AATAAA	-18	NA	47022384	47036467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
ES_00025681	chr17	+	7024	18	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16075	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	15.6486067345807	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGAGGTGCATTCCTTA	2018	False	NA	NA	False	AATAAA	-20	NA	47507237	47672883	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834_47670699_47670732
ES_00025683	chr17	+	4857	5	FSM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	0	9	0	-9	multi-exon	FALSE	canonical	2	2	junction_3	3.20156211871642	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGCAGCTGTAGGTTG	9562	False	NA	4	True	AATAAA	-22	NA	47747729	47781554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47747875_47757489_47757597_47774878_47774955_47776603_47779779_47780200
ES_00025686	chr17	+	3263	2	FSM	ENSMUSG00000034165.17	ENSMUST00000182281.2	3858	2	0	595	0	0	multi-exon	FALSE	canonical	3	3645	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGCCAACCTGGGGGA	NA	False	NA	NA	False	AAAAAG	-35	NA	47904360	47908504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47904778_47905658
ES_00025688	chr17	+	1041	7	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	2963	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	167.228137584558	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGCCTGTTGAGTCATT	NA	False	NA	15	True	AATAAA	-15	NA	48040731	48045406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48040787_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ES_00025689	chr17	+	739	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	4553	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	171.057738790152	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48042321	48045407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48042393_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ES_00025690	chr17	+	1272	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	4612	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	166.164827806609	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGCCTGTTGAGTCATT	NA	False	NA	15	True	AATAAA	-15	NA	48042380	48045406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_48042986_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ES_00025691	chr17	+	309	1	FSM	ENSMUSG00000084288.2	ENSMUST00000117186.2	357	1	-15	63	-15	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATCAACTATTACGACAT	NA	False	NA	NA	False	NA	NA	NA	48246999	48247308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_48247000_48247300
ES_00025692	chr17	+	2094	5	FSM	ENSMUSG00000071068.8	ENSMUST00000233092.2	2094	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.6583123951777	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGACTCAACCATGGGG	1568	False	NA	NA	False	NA	NA	NA	48606967	48617049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_48607625_48609639_48609961_48614907_48615302_48616146_48616254_48616434
ES_00025693	chr17	+	4266	7	NNC	ENSMUSG00000038910.8	novel	4185	6	NA	NA	-265	-4	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	30.0111090542597	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTCCAATAGCAGTACAT	NA	False	NA	NA	False	ATTAAA	-17	NA	50816165	50995508	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_50816213_50816392_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ES_00025694	chr17	+	3651	5	NIC	ENSMUSG00000038910.8	novel	4185	6	NA	NA	13	-411	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	37.7955023779285	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTATCCTGGCCCAAAC	NA	False	NA	NA	False	AATAAA	-14	NA	50816443	50995101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50994739
ES_00025698	chr17	+	2473	4	FSM	ENSMUSG00000003198.11	ENSMUST00000224294.2	705	4	-112	-1656	-112	7	multi-exon	FALSE	canonical	3	33	junction_1	7.87400787401181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTATGTGTCTTTTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	56199355	56205935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56199861_56202820_56202948_56203140_56203202_56204155
ES_00025699	chr17	+	2325	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	51	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	208.4942205434	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACAGCTTTTATTGG	NA	False	NA	NA	False	TATAAA	-16	NA	56388474	56407598	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ES_00025704	chr17	+	453	1	FSM	ENSMUSG00000117176.2	ENSMUST00000232819.2	453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAAGGCTCCTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	56545908	56546361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56545900_56546400
ES_00025707	chr17	+	3484	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	268	junction_4	539.303830038087	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	513	False	NA	36	True	AATAAA	-20	NA	56610413	56630486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617828_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ES_00025709	chr17	+	2515	9	ISM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	10804	0	2489	0	intron_retention	FALSE	canonical	3	2127	junction_3	124.378894411391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	8652	False	NA	36	True	AATAAA	-20	NA	56622151	56630486	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
ES_00025710	chr17	+	4599	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	2	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	47.4564828932259	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGGTCATGGCTGTGT	4911	False	NA	11	True	ATTAAA	-27	NA	56633075	56709863	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00025712	chr17	+	2775	12	FSM	ENSMUSG00000024201.13	ENSMUST00000141507.2	2775	12	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	47.9627954988668	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGGCTGTGTCTTCATT	4181	False	NA	18	True	ATTAAA	-34	NA	56700919	56709870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56701107_56701789_56701890_56703221_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00025713	chr17	+	3019	22	NIC	ENSMUSG00000071054.13	novel	3106	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_1	120.113627231518	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTTAAGTGCCCTTTA	7986	False	NA	15	True	AATAAA	-6	NA	56891982	56913274	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56892044_56892186_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ES_00025718	chr17	+	1031	2	Antisense	novelGene_ENSMUSG00000073377.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	64841673	64843390	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_64841731_64842416
ES_00025719	chr17	+	4004	20	NIC	ENSMUSG00000061950.18	novel	775	7	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	77.0463399789706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGGGAGAAAGGCGT	NA	False	NA	31	True	AATAAA	-28	NA	66089710	66148917	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_66090015_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ES_00025720	chr17	+	229	1	Genic_Genomic	ENSMUSG00000117250.2	novel	NA	NA	NA	NA	2544	157	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGACAATTCTTAAACAGA	NA	False	NA	NA	False	NA	NA	NA	66195958	66196187	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_+_66196000_66196200
ES_00025721	chr17	+	2331	2	FSM	ENSMUSG00000117296.2	ENSMUST00000233041.2	3450	2	1116	3	1116	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACTTTGTGATTATTGAT	NA	False	NA	NA	False	ATTAAA	-11	NA	66501462	66506812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66503334_66506352
ES_00025722	chr17	+	200	1	FSM	ENSMUSG00000117003.2	ENSMUST00000233518.2	2746	1	188	2358	188	-2358	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTGTAGAAATCGGAGAAG	NA	False	NA	NA	False	NA	NA	NA	66757036	66757236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66757000_66757200
ES_00025723	chr17	+	687	4	FSM	ENSMUSG00000024044.20	ENSMUST00000225062.2	666	4	-21	0	-21	0	multi-exon	FALSE	canonical	1	4	junction_1	22.6274169979695	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCGAACATCTGAACCT	NA	False	NA	NA	False	NA	NA	NA	69382725	69545372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_69382991_69514880_69515072_69517180_69517379_69545339
ES_00025725	chr17	+	3625	3	FSM	ENSMUSG00000049672.16	ENSMUST00000062369.14	3625	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	68.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690313	69697745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_69690416_69692415_69692500_69694306
ES_00025727	chr17	+	210	2	Antisense	novelGene_ENSMUSG00000097282.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	132	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCTCGCAGACACCTG	NA	False	NA	NA	False	NA	NA	NA	71035219	71064575	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_71035274_71064419
ES_00025730	chr17	+	4128	16	NNC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	35	2	at_least_one_novel_splicesite	FALSE	canonical	1	20	junction_1	14.2289220330362	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGCTGTGTCTTTTACCC	NA	False	NA	5	True	AATAAA	-18	NA	72089646	72165347	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_72089842_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886_72156960_72163222
ES_00025731	chr17	+	2019	14	NIC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	79	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	21.0510790458371	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCCACTGTGTGTGTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	72089690	72157156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_72089846_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886
ES_00025732	chr17	+	512	5	FSM	ENSMUSG00000024059.11	ENSMUST00000229903.2	651	5	139	0	139	0	multi-exon	FALSE	canonical	3	23	junction_4	16.3916899677855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGTTAGGTACGTGGG	NA	False	NA	NA	False	NA	NA	NA	72138199	72163337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_72138335_72141178_72141303_72144688_72144754_72156886_72156960_72163222
ES_00025733	chr17	+	2741	1	FSM	ENSMUSG00000024065.9	ENSMUST00000233212.2	3528	1	765	22	58	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCGAAGAATAGAATAAACT	NA	False	NA	NA	False	ACTAAA	-27	NA	74111893	74114634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_74111900_74114600
ES_00025734	chr17	+	2220	1	FSM	ENSMUSG00000117262.2	ENSMUST00000233585.2	2125	1	100	-195	100	195	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGAACTCTTGCCTGT	NA	False	NA	NA	False	ATTAAA	-11	NA	74519052	74521272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_74519100_74521300
ES_00025745	chr17	+	6674	34	FSM	ENSMUSG00000001870.17	ENSMUST00000001927.12	6671	34	-3	0	-3	0	multi-exon	FALSE	canonical	2	10	junction_21	5.00871600276228	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACAACCTGTCTATGAT	NA	False	NA	NA	False	NA	NA	NA	75312559	75698762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583390_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ES_00025746	chr17	+	5909	34	NIC	ENSMUSG00000001870.17	novel	6671	34	NA	NA	-88	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_21	5.00871600276228	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTGAGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	75312724	75698321	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583549_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ES_00025747	chr17	+	513	1	FSM	ENSMUSG00000117192.2	ENSMUST00000233688.2	461	1	65	-117	65	117	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTTTAACAATGTATA	7499	False	NA	NA	False	ATTAAA	-10	NA	79059748	79060261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_79059700_79060300
ES_00025748	chr17	+	531	2	FSM	ENSMUSG00000024082.6	ENSMUST00000233138.2	514	2	-17	0	5	0	multi-exon	FALSE	canonical	3	397	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACCCTCCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	79244570	79245390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_79244631_79244919
ES_00025749	chr17	+	1259	10	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	142.310909847869	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCTGTACCAAATCTG	NA	False	NA	NA	False	AATAAA	-13	NA	79244589	79255361	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79255201
ES_00025753	chr17	+	1363	4	FSM	ENSMUSG00000024245.5	ENSMUST00000025092.5	1696	4	81	252	81	-252	multi-exon	FALSE	canonical	2	2	junction_2	0.471404520791032	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATTATTTGTGAATGT	NA	False	NA	NA	False	NA	NA	NA	81252141	81308993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_81252518_81293608_81293723_81297133_81297272_81308258
ES_00025755	chr17	+	5090	22	FSM	ENSMUSG00000032624.17	ENSMUST00000112363.10	5081	22	-9	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	90.7300948604083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCCAAGTGTTTCACGT	NA	False	NA	66	True	AATGAA	-3	NA	83658410	83787693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ES_00025756	chr17	+	1685	14	ISM	ENSMUSG00000055817.19	ENSMUST00000067826.15	2087	17	9	22030	9	0	5prime_fragment	FALSE	canonical	1	12	junction_6	306.604442276476	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTGTTTTTTTTTTT	NA	False	NA	12	True	AATAAA	-17	NA	84013628	84100304	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070342_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
ES_00025758	chr17	+	327	3	FSM	ENSMUSG00000040852.7	ENSMUST00000235090.2	663	3	167	169	167	-169	multi-exon	FALSE	canonical	2	2	junction_1	1.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTACCCACTCTAATAT	NA	False	NA	NA	False	NA	NA	NA	84883144	84890973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_84883232_84884585_84884745_84890892
ES_00025759	chr17	+	4497	4	NNC	ENSMUSG00000071037.7	novel	741	4	NA	NA	24	-36018	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	37.6769897358528	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGTCCATCTGTGATG	2251	False	NA	3	True	AATAAA	-39	NA	85398057	85437918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_85398292_85403917_85404091_85421210_85421276_85433893
ES_00025768	chr17	+	1217	10	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	12	5	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_6	46.65343727826	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCCCTCCCATTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	95057551	95082565	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ES_00025770	chr17	-	423	2	NNC	ENSMUSG00000023795.17	novel	712	5	NA	NA	37	-4301	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCTCCAAGCAGCAGCG	NA	False	NA	NA	False	NA	NA	NA	3134421	3132743	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_3132988_3134242
ES_00025771	chr17	-	257	1	FSM	ENSMUSG00000116941.2	ENSMUST00000232579.2	355	1	139	-41	139	41	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTACAAAAACAAAACAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	3180648	3180391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3180400_3180600
ES_00025772	chr17	-	312	1	FSM	ENSMUSG00000116838.2	ENSMUST00000231500.2	1936	1	1385	239	1385	-239	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTCCTAACTCCCGTTA	NA	False	NA	NA	False	AATACA	-3	NA	3363075	3362763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3362800_3363100
ES_00025773	chr17	-	279	1	FSM	ENSMUSG00000115039.2	ENSMUST00000228135.2	533	1	293	-39	293	39	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	AATAAA	-19	NA	3512314	3512035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_3512000_3512300
ES_00025774	chr17	-	1891	2	Antisense	novelGene_ENSMUSG00000069729.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATGTGTTACAGTCTGT	NA	False	NA	-6	True	GATAAA	-10	NA	5103579	5099246	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_5100466_5102907
ES_00025775	chr17	-	804	6	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	0	9645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2942.06897267892	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGCAGTGGTGGCACAC	NA	False	NA	NA	False	NA	NA	NA	6367775	6346969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6347007_6360822_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ES_00025776	chr17	-	353	1	FSM	ENSMUSG00000118494.2	ENSMUST00000238962.2	292	1	-66	5	-66	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGCGCAAGGGGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	6372077	6371724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6371700_6372100
ES_00025777	chr17	-	292	1	FSM	ENSMUSG00000094843.3	ENSMUST00000178232.3	618	1	386	-60	386	60	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTCTTGTTCTCTACA	NA	False	NA	NA	False	AATACA	-20	NA	6374531	6374239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6374200_6374500
ES_00025778	chr17	-	913	1	FSM	ENSMUSG00000116921.2	ENSMUST00000232389.2	838	1	-96	21	-96	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCTCCCAAGGCGAAGAA	NA	False	NA	NA	False	NA	NA	NA	6405897	6404984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_6405000_6405900
ES_00025779	chr17	-	226	2	Intergenic	novelGene_1676	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGATTTTTATGGTTGG	NA	False	NA	NA	False	NA	NA	NA	6729577	6679955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6680138_6729533
ES_00025780	chr17	-	244	1	Intergenic	novelGene_1677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAATGATTTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	6680202	6679958	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6680000_6680200
ES_00025781	chr17	-	5192	11	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-1239	8987	intron_retention	FALSE	non_canonical	0	0	junction_1	346.869427883173	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTTGGGAGCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	6718383	6696935	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6696958_6705930_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836
ES_00025782	chr17	-	2756	17	NNC	ENSMUSG00000096780.8	novel	2426	9	NA	NA	-10155	0	intron_retention	FALSE	canonical	0	0	junction_3	300.322430897194	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACTTTTTGTTGCTGTG	2313	False	NA	2	True	AATAAA	-23	NA	6744576	6705922	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6706243_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717874_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ES_00025784	chr17	-	1154	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-23417	-15007	at_least_one_novel_splicesite	TRUE	canonical	3	74	junction_4	288.250758888854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	6757838	6723807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6757652
ES_00025785	chr17	-	8303	12	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	-22991	4353	multi-exon	FALSE	canonical	2	9	junction_11	14.936781380757	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTACATGTGTGCCAAG	8907	False	NA	NA	False	AATAAA	-21	NA	6819103	6774836	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_6779304_6781304_6783818_6785940_6786085_6791132_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281_6817349_6818883
ES_00025786	chr17	-	385	5	NNC	ENSMUSG00000093880.4	novel	1386	16	NA	NA	18562	-3809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	211.215973591014	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTCCGTCATATGCCT	NA	False	NA	NA	False	NA	NA	NA	6888627	6884960	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6885037_6886506_6886563_6887684_6887779_6887944_6888076_6888599
ES_00025788	chr17	-	512	1	Intergenic	novelGene_1686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTCCGTCCTGAGAGGT	NA	False	NA	NA	False	GGGGCT	-18	NA	6913789	6913277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6913300_6913800
ES_00025789	chr17	-	2214	9	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	16	64248	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	355.161230992348	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATAGAAGAAAACCAGAGA	NA	False	NA	NA	False	NA	NA	NA	13179242	13097528	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13097554_13161924_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
ES_00025790	chr17	-	2124	10	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	0	64248	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	335.722475039896	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATAGAAGAAAACCAGAGA	NA	False	NA	NA	False	NA	NA	NA	13179634	13097528	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13097555_13161928_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ES_00025791	chr17	-	2126	10	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	0	64248	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	335.722475039896	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATAGAAGAAAACCAGAGA	NA	False	NA	NA	False	NA	NA	NA	13179634	13097528	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13097554_13161925_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ES_00025793	chr17	-	2012	19	FSM	ENSMUSG00000073460.6	ENSMUST00000233474.2	2004	19	0	-8	0	8	multi-exon	TRUE	canonical	1	1	junction_8	33.1558701951112	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCCAGTGCATTCCTTC	2974	False	NA	0	True	GATAAA	-28	NA	13128833	13107607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113499_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ES_00025794	chr17	-	2128	10	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	0	34681	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	335.722475039896	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTTAGTGTCCTAAATAA	NA	False	NA	NA	False	NA	NA	NA	13179634	13127095	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13127127_13161929_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ES_00025796	chr17	-	446	2	FSM	ENSMUSG00000057388.10	ENSMUST00000162978.2	446	2	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCAACTAGTTAGTTGCC	NA	False	NA	NA	False	NA	NA	NA	13134956	13134388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13134712_13134833
ES_00025798	chr17	-	3600	9	NIC	ENSMUSG00000060475.14	novel	2060	8	NA	NA	1	823	combination_of_known_junctions	FALSE	canonical	3	8	junction_8	239.684558326147	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTTAAGAGCACTGAC	NA	False	NA	NA	False	AGTAAA	-30	NA	13213051	13184859	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195_13212000_13212949
ES_00025799	chr17	-	559	1	FSM	ENSMUSG00000089883.2	ENSMUST00000160079.2	487	1	-36	-36	-36	36	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATTTTTCTTTAGCAA	NA	False	NA	NA	False	AATAAA	-19	NA	14083101	14082542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_14082500_14083100
ES_00025801	chr17	-	1018	3	Antisense	novelGene_ENSMUSG00000116953.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	70	junction_1	20	73	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAACGGGTTCTTTGGAAG	NA	False	NA	NA	False	AATAAA	-16	NA	15213462	15201657	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_15202006_15208649_15208854_15212996
ES_00025802	chr17	-	918	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	-59	-4601	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	16.779617264871	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAACCTTGATCTCCGCTG	NA	False	NA	NA	False	AGTAAA	-19	NA	15461104	15456447	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_15456884_15457287_15457536_15460531_15460624_15460962
ES_00025803	chr17	-	1970	5	FSM	ENSMUSG00000014769.11	ENSMUST00000231341.2	1970	5	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_3	328.285698744249	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718601	15696220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ES_00025804	chr17	-	670	4	FSM	ENSMUSG00000014771.14	ENSMUST00000139610.8	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_1	13.8884444373331	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAATATTAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-8	NA	15747346	15742964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15743169_15745530_15745663_15746634_15746875_15747252
ES_00025807	chr17	-	380	1	Genic_Genomic	ENSMUSG00000116614.2	novel	NA	NA	NA	NA	318	114	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTACCACTGACATTGT	NA	False	NA	NA	False	AATAGA	-21	NA	16541044	16540664	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_16540700_16541000
ES_00025811	chr17	-	1966	5	FSM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	255	0	-32	0	multi-exon	FALSE	canonical	2	10	junction_1	2.29128784747792	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTAAGAAAATACCTGGT	NA	False	NA	NA	False	NA	NA	NA	22128652	22098550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029_22127178_22128534
ES_00025812	chr17	-	969	1	FSM	ENSMUSG00000117049.2	ENSMUST00000233196.2	969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	411	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTGCTTACCATCTCTA	NA	False	NA	NA	False	GGGGCT	-7	NA	22140153	22139184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22139200_22140200
ES_00025813	chr17	-	1178	1	FSM	ENSMUSG00000117252.2	ENSMUST00000233487.2	1345	1	350	-183	350	183	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGGGACTGGTGCTGA	NA	False	NA	NA	False	AATATA	-15	NA	22404739	22403561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22403600_22404700
ES_00025815	chr17	-	760	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	22	-2802	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_6	14.4501057281791	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAAAAACCATGTAAACT	NA	False	NA	NA	False	AAAACA	-17	NA	22533796	22507653	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
ES_00025816	chr17	-	967	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	7	-1864	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.9463334554289	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGTTCTATCATTGGT	NA	False	NA	-1	True	TATAAA	-20	NA	22580374	22558833	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577970_22578420_22578506_22580148
ES_00025818	chr17	-	502	3	FSM	ENSMUSG00000062012.15	ENSMUST00000228298.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	39	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTGGTGTTATAACTAT	4879	False	NA	NA	False	NA	NA	NA	23805150	23803763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23803913_23804411_23804549_23804934
ES_00025819	chr17	-	1358	1	FSM	ENSMUSG00000066720.8	ENSMUST00000085989.8	1443	1	85	0	85	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCTCTGGTCTGTGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	23902915	23901557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23901600_23902900
ES_00025820	chr17	-	625	1	FSM	ENSMUSG00000118572.2	ENSMUST00000239094.2	615	1	136	-146	136	146	mono-exon	FALSE	NA	NA	NA	NA	NA	1735	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGGGGCTGGCGGCAC	NA	False	NA	NA	False	AGTAAA	-23	NA	23918951	23918326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23918300_23919000
ES_00025821	chr17	-	2121	10	FSM	ENSMUSG00000040680.10	ENSMUST00000046525.10	2123	10	0	2	0	-2	multi-exon	FALSE	canonical	1	2	junction_8	4.5242829047783	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTTTAGCAAGTTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	23964807	23960172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23960946_23961170_23961250_23961330_23961457_23961535_23961869_23962193_23962348_23962528_23962654_23962726_23962819_23963516_23963692_23963908_23964078_23964712
ES_00025822	chr17	-	210	2	Antisense	novelGene_ENSMUSG00000086719.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGCGTCGTACACTGAG	6502	False	NA	NA	False	NA	NA	NA	23991599	23967504	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_23967522_23991406
ES_00025823	chr17	-	2943	7	FSM	ENSMUSG00000040097.17	ENSMUST00000227120.2	2943	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	23.685438564654	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGTGTGTCAGTAATA	NA	False	NA	1	True	AATAAA	-25	NA	23982063	23971766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949
ES_00025824	chr17	-	3445	9	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	4	-9	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	43.4667617266343	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTACAGAGCTGCTGTGTG	7529	False	NA	-8	True	AATAAA	-16	NA	23990572	23971775	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208_23989307_23990388
ES_00025826	chr17	-	650	3	NNC	ENSMUSG00000023911.13	novel	694	3	NA	NA	-134	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	1	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGTAGTTTTTGTTGTT	NA	False	NA	-2	True	AATAAA	-24	NA	24005189	23995891	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_23996074_23998601_23999031_24005150
ES_00025827	chr17	-	434	3	FSM	ENSMUSG00000023911.13	ENSMUST00000122991.2	434	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAGAGAGAAAATAAAAG	NA	False	NA	-43	True	NA	NA	NA	23998765	23995932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23996074_23996785_23996915_23998601
ES_00025828	chr17	-	874	2	Intergenic	novelGene_1726	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTCCACCTGTGGCGTA	9389	False	NA	17	True	NA	NA	NA	24242000	24239855	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_24240269_24241539
ES_00025829	chr17	-	1727	14	FSM	ENSMUSG00000024122.17	ENSMUST00000115411.8	1724	14	0	-3	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.8150685713647	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTGCCATGGAGCCT	NA	False	NA	-3	True	AATAAA	-18	NA	24360527	24292653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24292725_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
ES_00025830	chr17	-	1214	4	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	0	34387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1264.20963451478	356	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGCCAAGCATGGTGATA	NA	False	NA	NA	False	NA	NA	NA	24388435	24348452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24348483_24382838_24383583_24383672_24383857_24388179
ES_00025831	chr17	-	1212	4	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	0	34387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1264.20963451478	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGCCAAGCATGGTGATA	NA	False	NA	NA	False	NA	NA	NA	24388435	24348452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24348483_24382840_24383583_24383672_24383857_24388179
ES_00025832	chr17	-	1213	4	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	0	34387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1264.20963451478	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGCCAAGCATGGTGATA	NA	False	NA	NA	False	NA	NA	NA	24388435	24348452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24348484_24382840_24383583_24383672_24383857_24388179
ES_00025833	chr17	-	1530	10	FSM	ENSMUSG00000036820.13	ENSMUST00000130520.2	1530	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	20.9644025156813	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382704	24374806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ES_00025834	chr17	-	1228	2	FSM	ENSMUSG00000036820.13	ENSMUST00000131766.2	1225	2	0	-3	0	3	multi-exon	FALSE	canonical	3	360	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGAATGGATTTTCTCTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	24382667	24381190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24382307_24382555
ES_00025835	chr17	-	1709	9	NIC	ENSMUSG00000024118.15	novel	1569	9	NA	NA	-7	3	intron_retention	FALSE	canonical	3	19	junction_7	88.9729593753068	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCAGTGGTGGTGCACG	3389	False	NA	NA	False	NA	NA	NA	24439712	24434024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24439225_24439285_24439495_24439590_24439664
ES_00025839	chr17	-	2301	14	NNC	ENSMUSG00000024137.10	novel	2226	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	33.0346778526506	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTGTGATTGGGTAGA	237	False	NA	0	True	AATAAA	-17	NA	24670453	24662751	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24662820_24662841_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379
ES_00025840	chr17	-	2599	14	NNC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.0572712352947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674289	24662755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24663333_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ES_00025847	chr17	-	589	1	FSM	ENSMUSG00000002496.11	ENSMUST00000227432.2	570	1	0	-19	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTGACTTTGTCTT	NA	False	NA	8	True	NA	NA	NA	24816032	24815443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24815400_24816000
ES_00025848	chr17	-	5429	40	FSM	ENSMUSG00000002496.11	ENSMUST00000228412.2	5432	40	10	-7	7	0	multi-exon	FALSE	canonical	3	88	junction_15	40.1073674085831	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGTGGAGTTCAGAGAGC	NA	False	NA	-36	True	AATAAA	-18	NA	24851594	24815487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ES_00025853	chr17	-	2767	21	FSM	ENSMUSG00000040688.17	ENSMUST00000046534.15	2767	21	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_14	40.6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCACTCTTAATCCTGC	NA	False	NA	-11	True	AATAGA	-34	NA	24926605	24919431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ES_00025856	chr17	-	835	3	FSM	ENSMUSG00000040048.15	ENSMUST00000129451.2	834	3	0	-1	0	1	multi-exon	FALSE	canonical	3	2248	junction_2	20.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTCTGGTGACTAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	24943394	24941032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24941495_24941628_24941768_24943160
ES_00025858	chr17	-	282	3	Antisense	novelGene_ENSMUSG00000046070.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_2	0.5	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGCTGGAAATTAACTC	NA	False	NA	NA	False	NA	NA	NA	25097535	25094552	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_25094653_25096077_25096186_25097461
ES_00025860	chr17	-	1513	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	0	-11	0	5	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGTCTTGTTTGGGG	NA	False	NA	0	True	AGTAAA	-30	NA	25105307	25101579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ES_00025863	chr17	-	5226	7	FSM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	3.80423740350444	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTGTGTTACAGTG	1896	False	NA	NA	False	AATAAA	-16	NA	25114029	25107459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
ES_00025864	chr17	-	549	2	FSM	ENSMUSG00000024163.18	ENSMUST00000133198.2	549	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCAATGAATCCCAGAGC	7005	False	NA	NA	False	AGTAAA	-41	NA	25122338	25121663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25122137_25122262
ES_00025868	chr17	-	736	6	FSM	ENSMUSG00000024165.10	ENSMUST00000233067.2	1430	6	0	694	0	-694	multi-exon	TRUE	canonical	1	8	junction_1	714.702007832635	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTGTGCTAAGGTCTG	4793	False	NA	NA	False	NA	NA	NA	25179643	25157086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25157141_25163413_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ES_00025869	chr17	-	1199	3	FSM	ENSMUSG00000024165.10	ENSMUST00000233316.2	1705	3	0	506	0	-506	multi-exon	FALSE	canonical	3	1697	junction_1	67.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCTCCCGGGGCAGCAT	4826	False	NA	NA	False	NA	NA	NA	25179610	25166773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25167755_25174991_25175141_25179541
ES_00025870	chr17	-	7671	21	FSM	ENSMUSG00000038002.10	ENSMUST00000233774.2	7674	21	0	3	0	-3	multi-exon	FALSE	canonical	1	1	junction_9	1.96468827043885	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTCTGTCTTTTGTGCC	5373	False	NA	-3	True	CATAAA	-20	NA	25234762	25180202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25183921_25187899_25188046_25189388_25189554_25190350_25190583_25191309_25191376_25192054_25192234_25192477_25192583_25193678_25193761_25196305_25196381_25196469_25196652_25198459_25198638_25201197_25202371_25202917_25203000_25203948_25204073_25204495_25204582_25211243_25211293_25213559_25213644_25216426_25216581_25222185_25222380_25232661_25233000_25234503
ES_00025876	chr17	-	2090	14	NIC	ENSMUSG00000063011.8	novel	2165	16	NA	NA	-8	0	intron_retention	FALSE	canonical	2	3	junction_13	17.5165179863711	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6934	False	NA	-2	True	AATAAA	-22	NA	25973009	25967586	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972747
ES_00025880	chr17	-	718	4	ISM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	32	173	2	9	intron_retention	FALSE	canonical	3	256	junction_1	25.0377492776186	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGTGCCAACATTTGG	7794	False	NA	NA	False	NA	NA	NA	26087706	26082844	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387
ES_00025881	chr17	-	1014	4	FSM	ENSMUSG00000025728.17	ENSMUST00000139078.3	1014	4	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_2	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGGACACAGCCTACCC	NA	False	NA	NA	False	NA	NA	NA	26150614	26146576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931
ES_00025882	chr17	-	1851	4	FSM	ENSMUSG00000025728.17	ENSMUST00000140304.2	1835	4	0	-16	0	16	multi-exon	FALSE	canonical	3	268	junction_1	24.9844396019247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAATATTAAATAAGACC	NA	False	NA	NA	False	ATTAAA	-36	NA	26160909	26152953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26153853_26153976_26154109_26155737_26156437_26160788
ES_00025884	chr17	-	3520	12	FSM	ENSMUSG00000037326.11	ENSMUST00000041641.9	3520	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	28.2921593554069	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGTTCCCTAGGGCAAG	1838	False	NA	NA	False	NA	NA	NA	26204654	26178529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26178708_26178780_26178960_26179038_26179206_26179310_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ES_00025885	chr17	-	1993	9	FSM	ENSMUSG00000036775.14	ENSMUST00000237265.2	1993	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	55.4211151096764	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	-23	True	NA	NA	NA	26309194	26300203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26301236_26301944_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ES_00025889	chr17	-	2544	11	NIC	ENSMUSG00000024187.16	novel	2749	12	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	85.9734842844001	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTCTGTCTGGATGTC	2001	False	NA	-4	True	AATAAA	-44	NA	26463115	26431670	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26439254_26439555_26462963
ES_00025890	chr17	-	2753	12	FSM	ENSMUSG00000024187.16	ENSMUST00000234175.2	2749	12	9	-13	9	-6	multi-exon	FALSE	canonical	3	10	junction_11	62.3582027847616	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTCTGTCTGGATGTC	1909	False	NA	-4	True	AATAAA	-44	NA	26463207	26431670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462963
ES_00025892	chr17	-	2327	3	FSM	ENSMUSG00000024190.8	ENSMUST00000126178.2	2313	3	0	-14	0	13	multi-exon	FALSE	canonical	3	485	junction_2	17.5	1419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGACCCCACTCTTG	NA	False	NA	13	True	AATAAA	-33	NA	26727448	26724550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26725625_26725958_26726694_26726930
ES_00025893	chr17	-	740	4	FSM	ENSMUSG00000024194.17	ENSMUST00000236744.2	740	4	0	0	0	0	multi-exon	FALSE	canonical	3	797	junction_2	77.9016473937918	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9663	False	NA	-17	True	AATAAA	-18	NA	27158132	27156945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157592_27157700_27157761_27157857
ES_00025894	chr17	-	786	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	0	-1	0	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9398	False	NA	-17	True	AATAAA	-18	NA	27158397	27156945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
ES_00025895	chr17	-	720	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236888.2	719	6	0	-1	0	0	multi-exon	FALSE	canonical	3	18	junction_3	368.320838400436	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9387	False	NA	-17	True	AATAAA	-18	NA	27158408	27156945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290
ES_00025897	chr17	-	525	5	NNC	ENSMUSG00000024208.17	novel	500	4	NA	NA	0	43296	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1242.09198532154	149	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAGGGAAAAAAAAAGTCA	1947	False	NA	NA	False	NA	NA	NA	27352890	27298340	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_27298371_27341641_27341815_27344120_27344191_27344857_27344933_27352713
ES_00025898	chr17	-	929	2	NNC	ENSMUSG00000117916.2	novel	2149	2	NA	NA	1710	-1660	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTTTTTCAAAATAGTT	7959	False	NA	NA	False	ACTAAA	-41	NA	27459923	27455708	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_27456112_27459397
ES_00025900	chr17	-	629	3	FSM	ENSMUSG00000024215.15	ENSMUST00000127622.3	1045	3	254	162	254	46	multi-exon	FALSE	canonical	1	1	junction_1	2.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGGGACTGGACCAAGT	NA	False	NA	NA	False	NA	NA	NA	27936439	27933586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27934021_27936142_27936290_27936391
ES_00025901	chr17	-	1382	4	FSM	ENSMUSG00000056692.14	ENSMUST00000075076.6	1382	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	6.23609564462324	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTTGTCCGTGACTGTA	NA	False	NA	NA	False	AGTAAA	-28	NA	28039428	27986462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27987214_28005044_28005243_28012882_28013038_28039150
ES_00025902	chr17	-	620	2	NNC	ENSMUSG00000024218.14	novel	805	2	NA	NA	0	69977	at_least_one_novel_splicesite	TRUE	canonical	3	117	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAATAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	28128113	28050118	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28050256_28127630
ES_00025903	chr17	-	1283	6	NNC	ENSMUSG00000024218.14	novel	1220	5	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	54	junction_1	40	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28126782	28120101	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28120278_28120298_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
ES_00025905	chr17	-	1540	2	NNC	ENSMUSG00000117120.2	novel	496	3	NA	NA	3576	1325	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	ATTAAA	-31	NA	28295693	28294066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28294481_28294567
ES_00025906	chr17	-	1496	1	FSM	ENSMUSG00000117028.2	ENSMUST00000232711.2	1064	1	0	-432	0	432	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCATGAGCCAATTGCT	8890	False	NA	NA	False	NA	NA	NA	28443141	28441645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28441600_28443100
ES_00025907	chr17	-	639	2	FSM	ENSMUSG00000037446.15	ENSMUST00000130877.2	1872	2	1212	21	1212	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGTCCGAGGCTGAACGC	NA	False	NA	NA	False	AATAAA	-2	NA	28572828	28570509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28570977_28572656
ES_00025909	chr17	-	231	2	Antisense	novelGene_ENSMUSG00000085333.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACCTATAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	29126724	29070006	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_29070186_29126672
ES_00025910	chr17	-	2957	4	NNC	ENSMUSG00000048905.6	novel	4597	12	NA	NA	4309	56	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	5.35412613473634	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGGCTGCCCCCGTGTT	NA	False	NA	52	True	NA	NA	NA	29120365	29115309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_29117898_29118456_29118721_29120104_29120170_29120325
ES_00025912	chr17	-	399	1	ISM	ENSMUSG00000024006.18	ENSMUST00000140355.9	1382	5	9	5495	9	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTCTTGTTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	29199210	29198811	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_29198800_29199200
ES_00025915	chr17	-	474	2	Genic_Genomic	ENSMUSG00000067575.6	novel	333	1	NA	NA	-61	39084	multi-exon	TRUE	non_canonical	0	0	junction_1	0	749	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCTGGACTTTGGGATA	NA	False	NA	NA	False	NA	NA	NA	29356339	29316861	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_29316894_29355897
ES_00025916	chr17	-	2322	12	FSM	ENSMUSG00000024008.17	ENSMUST00000126993.8	2332	12	10	0	10	0	multi-exon	FALSE	canonical	3	84	junction_8	10.8025096563731	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	8134	False	NA	-9	True	AGTAAA	-14	NA	29403067	29376889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896
ES_00025917	chr17	-	2606	14	ISM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	35413	2364	-18651	-4	3prime_fragment	FALSE	canonical	3	19	junction_13	23.8741770823823	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTAGATAGACCCCCCCT	8819	False	NA	-13	True	AGTAAA	-10	NA	29421728	29376893	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478
ES_00025918	chr17	-	1748	4	FSM	ENSMUSG00000024007.16	ENSMUST00000135123.3	1476	4	-263	-9	-25	5	multi-exon	FALSE	canonical	3	14	junction_3	716.343182808042	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTAGTATTGTTCTAGA	9664	False	NA	-19	True	AATAAA	-28	NA	29483185	29469796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29470700_29471223_29471293_29480710_29481147_29482845
ES_00025919	chr17	-	1108	13	FSM	ENSMUSG00000024012.19	ENSMUST00000235021.2	1108	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	349.661850538806	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566490	29551049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29551213_29551634_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
ES_00025921	chr17	-	1650	13	FSM	ENSMUSG00000024012.19	ENSMUST00000234416.2	1652	13	0	2	0	-2	multi-exon	FALSE	canonical	3	18	junction_11	417.184478245403	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCTGTGCAAGCCTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	29566526	29551051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29560038_29560176_29561796_29561882_29566440
ES_00025922	chr17	-	299	3	NNC	ENSMUSG00000097125.3	novel	417	2	NA	NA	13070	24951	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.5	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCCAATTGATCTGCTG	NA	False	NA	NA	False	NA	NA	NA	29670059	29640941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_29640970_29665892_29666108_29670003
ES_00025923	chr17	-	510	1	FSM	ENSMUSG00000091614.3	ENSMUST00000168877.2	510	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCCCGGTCGGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	29738764	29738254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29738300_29738800
ES_00025926	chr17	-	2024	7	FSM	ENSMUSG00000024026.14	ENSMUST00000024823.14	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	1513.88137103128	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30831586	30811834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822360_30822492_30822993_30823077_30831441
ES_00025927	chr17	-	898	6	FSM	ENSMUSG00000024026.14	ENSMUST00000235171.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1306.85751327373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831576	30812839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
ES_00025928	chr17	-	282	2	NIC	ENSMUSG00000099474.2	novel	845	4	NA	NA	96	0	combination_of_known_splicesites	FALSE	canonical	3	432	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845783	30841414	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_30841669_30845755
ES_00025929	chr17	-	971	3	ISM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	1720	2	1720	-2	3prime_fragment	FALSE	canonical	3	280	junction_2	76	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAATTCTTTCCTCTGAGA	NA	False	NA	-3	True	AATAAA	-23	NA	30844159	30841416	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_30841669_30843173_30843588_30843854
ES_00025930	chr17	-	1975	1	FSM	ENSMUSG00000118119.2	ENSMUST00000235890.2	1293	1	0	-682	0	682	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	31094258	31092283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31092300_31094300
ES_00025934	chr17	-	1059	1	FSM	ENSMUSG00000104159.2	ENSMUST00000193280.2	3170	1	1818	293	1818	-293	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACATTCTTGAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	31752616	31751557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31751600_31752600
ES_00025935	chr17	-	1046	9	Fusion	ENSMUSG00000061613.14_ENSMUSG00000118071.2	novel	1046	8	NA	NA	0	-1158	multi-exon	FALSE	non_canonical	0	0	junction_1	2066.5670053255	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTTGTCTAGGCAACA	NA	False	NA	NA	False	AGTAAA	-29	NA	31877677	31782913	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_31783103_31866054_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00025936	chr17	-	1046	9	Fusion	ENSMUSG00000061613.14_ENSMUSG00000118071.2	novel	975	9	NA	NA	0	-1158	multi-exon	FALSE	non_canonical	0	0	junction_1	2066.5670053255	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTTGTCTAGGCAACA	NA	False	NA	NA	False	AGTAAA	-29	NA	31877677	31782913	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_31783105_31866056_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00025937	chr17	-	1080	9	Fusion	ENSMUSG00000061613.14_ENSMUSG00000118071.2	novel	1046	8	NA	NA	0	-1158	multi-exon	FALSE	non_canonical	0	0	junction_1	2066.5670053255	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTTGTCTAGGCAACA	NA	False	NA	NA	False	AGTAAA	-29	NA	31877712	31782913	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_31783102_31866054_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00025938	chr17	-	1100	9	Fusion	ENSMUSG00000061613.14_ENSMUSG00000118071.2	novel	975	9	NA	NA	0	-1158	multi-exon	FALSE	non_canonical	0	0	junction_1	2723.95569152198	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTTGTCTAGGCAACA	NA	False	NA	NA	False	AGTAAA	-29	NA	31877729	31782913	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_31783105_31866054_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ES_00025941	chr17	-	984	7	NNC	ENSMUSG00000024042.8	novel	301	3	NA	NA	-51	45164	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	70.892916116884	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	32074829	32018059	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32018221_32069914_32070040_32070208_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
ES_00025942	chr17	-	208	2	Intergenic	novelGene_1759	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	127	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGCCCTAAACATTTCT	7844	False	NA	NA	False	NA	NA	NA	32384021	32331649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_32331822_32383985
ES_00025943	chr17	-	10188	20	NNC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	30007	0	intron_retention	FALSE	canonical	1	4	junction_19	104.430814484281	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTGTCTCCCTGAAAT	NA	False	NA	-4	True	AATAAA	-19	NA	32461332	32415247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32425968_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32443832_32443920_32444549_32444688_32448390_32448710_32461219
ES_00025944	chr17	-	5962	19	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	-42	0	intron_retention	FALSE	canonical	3	148	junction_18	43.3756203926174	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTGTCTCCCTGAAAT	NA	False	NA	-4	True	AATAAA	-19	NA	32503738	32415247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503491
ES_00025946	chr17	-	4448	20	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	0	-6	intron_retention	FALSE	canonical	3	16	junction_19	84.3313278277153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCCAGGTGACTTCTGA	NA	False	NA	NA	False	AAGAAA	-13	NA	32503083	32416724	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443057_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503036
ES_00025947	chr17	-	3809	15	NNC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	0	7244	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	157.187087931054	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTGTGAGTTACCATG	NA	False	NA	NA	False	NA	NA	NA	32540212	32515401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32515429_32522647_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
ES_00025948	chr17	-	1995	16	NNC	ENSMUSG00000002625.11	novel	1987	15	NA	NA	0	24996	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.420086739486	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTGTGAGTTACCATG	NA	False	NA	NA	False	NA	NA	NA	32569549	32515401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32515428_32540396_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ES_00025949	chr17	-	1975	10	NNC	ENSMUSG00000024045.7	novel	2021	12	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	1	6	junction_7	183.304711570518	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTGTTTTGTTTTTG	NA	False	NA	-9	True	AATAAA	-14	NA	32535361	32523665	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533116_32534415_32534463_32534628_32534759_32535160
ES_00025952	chr17	-	3359	6	ISM	ENSMUSG00000024050.19	ENSMUST00000169488.10	3578	9	3899	-601	3899	7	3prime_fragment	FALSE	canonical	3	73	junction_5	51.8096516104866	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGTGTGTTTTTTTCTG	NA	False	NA	-3	True	ATTAAA	-31	NA	32579538	32573021	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32579011
ES_00025953	chr17	-	4208	9	NIC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	-32	7	combination_of_known_junctions	FALSE	canonical	2	10	junction_4	72.0797084830398	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGTGTGTTTTTTTCTG	NA	False	NA	-3	True	ATTAAA	-31	NA	32583469	32573021	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576956_32577916_32578469_32579011_32579402_32580434_32580939_32581766_32581938_32583155
ES_00025954	chr17	-	4184	9	FSM	ENSMUSG00000024050.19	ENSMUST00000087703.12	4175	9	0	-9	0	7	multi-exon	FALSE	canonical	1	4	junction_8	91.2762804621222	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGTGTGTTTTTTTCTG	NA	False	NA	-3	True	ATTAAA	-31	NA	32607859	32573021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576956_32577916_32578469_32580434_32580939_32586797_32587122_32606546_32606792_32607577
ES_00025956	chr17	-	3607	1	Genic_Genomic	ENSMUSG00000024050.19	novel	NA	NA	NA	NA	-3577	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATCGGGCTAGCCAACCA	NA	False	NA	NA	False	NA	NA	NA	32592003	32588396	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_32588400_32592000
ES_00025958	chr17	-	10869	5	NNC	ENSMUSG00000024298.16	novel	10851	4	NA	NA	10	28314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.44097150806707	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAATAAGTCTGTAGGG	NA	False	NA	NA	False	NA	NA	NA	33007251	32956155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32956184_32984469_32994983_32996130_32996192_32996374_32996502_33007111
ES_00025959	chr17	-	374	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202759.2	374	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	14.4452991200136	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAATATACCGAAGGTCA	NA	False	NA	NA	False	AATGAA	-44	NA	33049220	33040051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33040074_33040751_33040813_33041041_33041175_33049062
ES_00025960	chr17	-	397	3	FSM	ENSMUSG00000095253.5	ENSMUST00000201499.2	651	3	0	254	0	-254	multi-exon	FALSE	canonical	3	24	junction_1	9.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTCAAACTGTTTTAATT	NA	False	NA	NA	False	AATAAA	-4	NA	33049189	33040669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33040813_33041047_33041175_33049062
ES_00025961	chr17	-	3711	2	FSM	ENSMUSG00000048602.10	ENSMUST00000053896.8	3712	2	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGCTTTTCATTATTTA	202	False	NA	NA	False	TATAAA	-16	NA	33358657	33354562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33357797_33358180
ES_00025962	chr17	-	353	4	FSM	ENSMUSG00000055240.18	ENSMUST00000183047.2	353	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.0765799460496	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATTATGGAAGAACACTG	NA	False	NA	NA	False	NA	NA	NA	33613579	33604680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33604743_33605395_33605442_33605658_33605786_33613461
ES_00025963	chr17	-	2238	16	NIC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	643.221420317728	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5819	False	NA	-8	True	AATAAA	-13	NA	33904314	33865212	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33896247_33896415_33904240
ES_00025966	chr17	-	1534	6	NIC	ENSMUSG00000079557.12	novel	1398	5	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	123.474045855799	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2660	False	NA	-11	True	AATAAA	-33	NA	33937660	33910488	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33934916_33935037_33937519
ES_00025969	chr17	-	982	2	FSM	ENSMUSG00000092564.3	ENSMUST00000172526.3	978	2	13	-17	13	17	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCAGGCAAATCATCCAT	1267	False	NA	NA	False	NA	NA	NA	34128139	34127000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34127561_34127717
ES_00025970	chr17	-	419	4	FSM	ENSMUSG00000024309.16	ENSMUST00000174426.2	396	4	0	-23	0	0	multi-exon	FALSE	canonical	3	39	junction_3	515.769974568767	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159304	34157896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34159270
ES_00025971	chr17	-	499	3	FSM	ENSMUSG00000008668.16	ENSMUST00000174758.8	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1139	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34171663	34170972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34171093_34171194_34171287_34171376
ES_00025972	chr17	-	1301	6	FSM	ENSMUSG00000073422.12	ENSMUST00000170644.8	1293	6	0	-8	0	5	multi-exon	FALSE	canonical	3	162	junction_4	17.6748408762286	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTTCTTGTGTCCAAGC	NA	False	NA	4	True	AATAAA	-28	NA	34247020	34245001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34246076_34246176_34246270_34246379
ES_00025973	chr17	-	1138	8	FSM	ENSMUSG00000073422.12	ENSMUST00000237759.2	1133	8	0	-5	0	5	multi-exon	FALSE	canonical	3	92	junction_7	39.6227104533936	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTTCTTGTGTCCAAGC	NA	False	NA	4	True	AATAAA	-28	NA	34247028	34245001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
ES_00025974	chr17	-	3712	11	FSM	ENSMUSG00000092595.3	ENSMUST00000168978.3	3711	11	0	-1	0	1	multi-exon	FALSE	canonical	3	49	junction_10	234.033523239727	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34250554	34245006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34246076_34246176_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34250237_34250521
ES_00025981	chr17	-	2623	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	18	0	18	0	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCTGTCTTATGTCTT	NA	False	NA	0	True	AATAAA	-18	NA	35101058	35081580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
ES_00025983	chr17	-	3087	3	Intergenic	novelGene_1776	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	30	junction_1	125.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAAGGTTGTCTGTT	NA	False	NA	-26	True	NA	NA	NA	35219859	35215709	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_35218446_35218974_35219185_35219718
ES_00025984	chr17	-	828	6	FSM	ENSMUSG00000024387.14	ENSMUST00000172765.9	828	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	373.178563157103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGGGAGCAAAGACAGTCA	NA	False	NA	NA	False	NA	NA	NA	35341029	35336671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340769
ES_00025985	chr17	-	6845	31	NNC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_17	132.735727418557	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGAAAGTCATGGGTGG	NA	False	NA	-1	True	AATAAA	-21	NA	35383845	35368051	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376869_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
ES_00025986	chr17	-	398	4	FSM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	17	0	17	0	multi-exon	FALSE	canonical	2	6	junction_2	1.24721912892465	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35407398	35404070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35404287_35405560_35405581_35405921_35406018_35407332
ES_00025987	chr17	-	1335	4	FSM	ENSMUSG00000024402.6	ENSMUST00000025266.6	1383	4	32	16	32	-16	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTTTTCTCTGAGATT	1070	False	NA	-15	True	NA	NA	NA	35424295	35422156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35423126_35423350_35423451_35423533_35423639_35424134
ES_00025990	chr17	-	4375	29	NNC	ENSMUSG00000038838.16	novel	4425	29	NA	NA	16	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	56.764764778938	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTACAGAGGTTAGCATT	1777	False	NA	NA	False	AATAAA	-9	NA	35978468	35966553	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973117_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
ES_00025991	chr17	-	658	3	FSM	ENSMUSG00000050705.16	ENSMUST00000154670.8	658	3	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_2	59	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGGCAGGTTTTCACG	NA	False	NA	-9	True	AATAAA	-13	NA	36206205	36203574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36204002_36205810_36206012_36206175
ES_00025992	chr17	-	1400	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	-12	0	-5	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGACTTGTCATTAT	NA	False	NA	-3	True	AATAAA	-33	NA	36220949	36208491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ES_00025993	chr17	-	1284	11	NIC	ENSMUSG00000024426.18	novel	1340	12	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	44.6434765671313	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCACTATAGCTACCGAC	NA	False	NA	-23	True	AATAAA	-13	NA	36220936	36208511	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_36208808_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ES_00025996	chr17	-	860	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174807.8	848	6	0	-12	0	5	multi-exon	FALSE	canonical	0	0	junction_1	524.403279928721	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTTGGGCTGTCTGTT	4355	False	NA	-1	True	AATAAA	-26	NA	36227222	36221265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36221744_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ES_00025997	chr17	-	544	1	FSM	ENSMUSG00000049832.7	ENSMUST00000173786.2	327	1	-42	-175	-42	175	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCAAAGCAAAGCGGAAGG	5611	False	NA	NA	False	AATAAA	-27	NA	36246884	36246340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36246300_36246900
ES_00025998	chr17	-	376	6	FSM	ENSMUSG00000038762.16	ENSMUST00000174128.8	376	6	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	359.563401919606	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGAGGAAGAGGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	36280251	36274530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280218
ES_00025999	chr17	-	1856	6	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	62	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	36.7205664444327	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290638	36283432	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018_36290148_36290599
ES_00026000	chr17	-	1500	9	FSM	ENSMUSG00000056116.19	ENSMUST00000173280.2	1723	9	223	0	40	0	multi-exon	FALSE	canonical	0	0	junction_3	0.85695682505013	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGTCTTAAATCTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	36353352	36349300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36349669_36349876_36349947_36350068_36350116_36350233_36350267_36351116_36351222_36351369_36351646_36352340_36352578_36352759_36353005_36353233
ES_00026001	chr17	-	223	1	ISM	ENSMUSG00000079492.3	ENSMUST00000113742.3	1344	6	1576	757	1576	-757	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACCCTGAGATGGGGTA	540	False	NA	NA	False	GGGGCT	-10	NA	36367687	36367464	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_36367500_36367700
ES_00026002	chr17	-	862	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
ES_00026003	chr17	-	1138	6	FSM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
ES_00026004	chr17	-	1105	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
ES_00026005	chr17	-	829	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
ES_00026006	chr17	-	213	2	ISM	ENSMUSG00000073405.7	ENSMUST00000172538.2	1067	7	1649	436	1649	-436	internal_fragment	FALSE	canonical	3	32	junction_1	0	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTCATTGTTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	36420901	36420561	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_36420625_36420751
ES_00026007	chr17	-	4131	3	ISM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	8059	-567	5187	567	3prime_fragment	FALSE	canonical	3	42	junction_1	7	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGCCCATAATTCATA	NA	False	NA	NA	False	NA	NA	NA	36574400	36569197	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_36571814_36572382_36572499_36573001
ES_00026008	chr17	-	520	4	FSM	ENSMUSG00000036398.14	ENSMUST00000174711.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	334.250737554243	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262633	37260181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_37260447_37260768_37260878_37262314_37262401_37262573
ES_00026010	chr17	-	1614	7	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	-547	731	multi-exon	FALSE	canonical	1	1	junction_6	65.4471797202395	196	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGCCAGGGTGTCAGT	NA	False	NA	NA	False	CATAAA	-2	NA	37292676	37279355	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37292031_37292399_37292517
ES_00026012	chr17	-	2857	5	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	0	1852	multi-exon	FALSE	canonical	3	20	junction_4	57.4603123903795	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGATTGTGTCACAATG	NA	False	NA	7	True	NA	NA	NA	37292109	37278234	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37292031
ES_00026013	chr17	-	2697	5	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	-183	279	intron_retention	FALSE	canonical	3	15	junction_4	93.890894127173	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTAAGTGAGACTGGAAAA	NA	False	NA	-4	True	TTTAAA	-5	NA	37300612	37294673	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396_37300097_37300320
ES_00026014	chr17	-	373	1	FSM	ENSMUSG00000067189.6	ENSMUST00000172475.2	373	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGGGCTCACCTCCCT	NA	False	NA	NA	False	AAAAAG	-9	NA	38024815	38024442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_38024400_38024800
ES_00026015	chr17	-	5595	18	NNC	ENSMUSG00000061665.8	novel	5364	18	NA	NA	12	3	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	66.4230959957521	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTTTTTTCCTGGTT	NA	False	NA	0	True	AATAAA	-20	NA	43187544	43103838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136787_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
ES_00026018	chr17	-	381	1	FSM	ENSMUSG00000117217.2	ENSMUST00000233124.2	939	1	33	525	33	-525	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCGGACAAAGGACTCCAA	NA	False	NA	NA	False	NA	NA	NA	45475022	45474641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45474600_45475000
ES_00026021	chr17	-	2234	12	FSM	ENSMUSG00000023942.16	ENSMUST00000163492.8	2216	12	0	-18	0	18	multi-exon	FALSE	canonical	3	1453	junction_5	300.974423009307	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTAACTAACTCCTTGG	NA	False	NA	17	True	AATAAA	-36	NA	45903501	45896107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104
ES_00026022	chr17	-	2051	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	-18	0	18	multi-exon	TRUE	canonical	3	17	junction_12	693.627476668052	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTAACTAACTCCTTGG	NA	False	NA	17	True	AATAAA	-36	NA	45910529	45896107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
ES_00026026	chr17	-	828	2	Intergenic	novelGene_1809	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAATTCTGGAGT	NA	False	NA	NA	False	NA	NA	NA	45929983	45925282	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_45925822_45929694
ES_00026027	chr17	-	657	5	NNC	ENSMUSG00000036026.16	novel	3284	24	NA	NA	43	1483	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	84.8100819478439	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAACTATAATGAGCC	NA	False	NA	NA	False	NA	NA	NA	45997142	45988405	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_45988609_45988851_45988943_45990162_45990243_45990457_45990641_45997042
ES_00026028	chr17	-	691	6	NNC	ENSMUSG00000036026.16	novel	507	4	NA	NA	43	1478	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	72.2728164664973	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAACTATAAT	NA	False	NA	NA	False	NA	NA	NA	45997142	45988410	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_45988609_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
ES_00026029	chr17	-	425	2	FSM	ENSMUSG00000036026.16	ENSMUST00000131089.2	438	2	13	0	13	0	multi-exon	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGGAGCCCAGAGCTCTA	NA	False	NA	NA	False	NA	NA	NA	45997800	45997149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45997415_45997640
ES_00026030	chr17	-	1991	8	FSM	ENSMUSG00000023951.19	ENSMUST00000142351.9	1973	8	-18	0	-18	0	multi-exon	FALSE	canonical	3	122	junction_2	174.18943476478	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACCCACCCACATACACA	NA	False	NA	NA	False	NA	NA	NA	46343313	46329468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46329806_46331916_46332049_46333202_46333275_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ES_00026033	chr17	-	463	2	FSM	ENSMUSG00000067148.16	ENSMUST00000124126.2	576	2	0	113	0	-113	multi-exon	FALSE	canonical	3	702	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGCTTCATTATATATG	NA	False	NA	NA	False	NA	NA	NA	46558894	46558337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46558727_46558820
ES_00026034	chr17	-	2192	8	FSM	ENSMUSG00000012296.17	ENSMUST00000225413.2	2189	8	0	-3	0	0	multi-exon	FALSE	canonical	3	25	junction_3	149.381035869855	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	NA	False	NA	-27	True	AATAAA	-21	NA	46574713	46568796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614
ES_00026035	chr17	-	2562	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	128.047189132086	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5846	False	NA	-30	True	AATAAA	-18	NA	46593912	46568799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ES_00026037	chr17	-	4884	20	FSM	ENSMUSG00000032842.14	ENSMUST00000047970.14	4885	20	0	1	0	-1	multi-exon	TRUE	canonical	3	24	junction_17	9.55491490762564	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTCTGTGTTTTAAAAA	7156	False	NA	-7	True	GATAAA	-11	NA	46638905	46614159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46614579_46614838_46614952_46615082_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618_46635841_46638697
ES_00026038	chr17	-	524	1	FSM	ENSMUSG00000091742.3	ENSMUST00000166852.3	520	1	71	-75	71	75	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGCAACTGTTACATAA	1248	False	NA	NA	False	AAAAAG	-20	NA	46750952	46750428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46750400_46751000
ES_00026039	chr17	-	219	2	Intergenic	novelGene_1816	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCAGTGATGTAAGGGCCA	NA	False	NA	NA	False	NA	NA	NA	46847461	46798668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_46798689_46847262
ES_00026040	chr17	-	506	3	FSM	ENSMUSG00000040327.17	ENSMUST00000183016.8	791	3	0	285	0	-285	multi-exon	FALSE	canonical	1	3	junction_2	0.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGAGCTGGGGACAGGA	805	False	NA	NA	False	NA	NA	NA	46831497	46830670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46830858_46830937_46831167_46831407
ES_00026043	chr17	-	1262	8	NIC	ENSMUSG00000023971.10	novel	2274	7	NA	NA	1	237	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	153.326382569461	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCCGGCCTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	46985212	46978146	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_46978160_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ES_00026046	chr17	-	4381	6	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	19222	0	-6	0	3prime_fragment	FALSE	canonical	3	125	junction_4	7.22772439983706	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47123117	47109045	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849
ES_00026047	chr17	-	4335	7	NIC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-74	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	45.4266808531433	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47123185	47109045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123064
ES_00026048	chr17	-	6480	13	NNC	ENSMUSG00000036568.8	novel	3685	12	NA	NA	-31965	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_12	44.4153376911875	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47201373	47109045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47124858_47124965_47135375_47137050_47140837_47140907_47140990_47141040_47141876_47141923_47169361_47169625_47201314
ES_00026049	chr17	-	7660	48	NNC	ENSMUSG00000023977.16	novel	5691	47	NA	NA	0	84750	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.6359134711016	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGTATTGTGGCACACGC	NA	False	NA	NA	False	NA	NA	NA	47321446	47154470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_47154500_47239222_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291245_47291345_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
ES_00026050	chr17	-	331	1	FSM	ENSMUSG00000062472.7	ENSMUST00000075152.7	453	1	269	-147	269	147	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTAGACATCAATGAAACTA	NA	False	NA	NA	False	AATAAA	-44	NA	47353696	47353365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47353400_47353700
ES_00026052	chr17	-	1444	5	FSM	ENSMUSG00000032717.15	ENSMUST00000066368.13	1711	5	265	2	265	-2	multi-exon	FALSE	canonical	0	0	junction_4	3	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAGGACTCTTTACA	957	False	NA	-4	True	AATAAA	-20	NA	48145351	48126254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48145237
ES_00026053	chr17	-	3703	17	NNC	ENSMUSG00000023991.17	novel	3999	17	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_14	41.8139013218092	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGTGTCACCAAGG	NA	False	NA	-2	True	ATTAAA	-18	NA	48235325	48178057	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191767_48199049_48199146_48215220_48215460_48235130
ES_00026054	chr17	-	3770	17	NNC	ENSMUSG00000023991.17	novel	3999	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_14	50.1059814293663	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGTGTCACCAAGG	NA	False	NA	-2	True	ATTAAA	-18	NA	48235356	48178057	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186650_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191767_48199049_48199146_48215220_48215460_48235130
ES_00026055	chr17	-	3828	17	FSM	ENSMUSG00000023991.17	ENSMUST00000097311.9	3197	17	0	-631	0	0	multi-exon	TRUE	canonical	3	24	junction_7	35.8812603422734	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGTGTCACCAAGG	NA	False	NA	-2	True	ATTAAA	-18	NA	48235360	48178057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186650_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ES_00026056	chr17	-	3504	8	FSM	ENSMUSG00000023994.14	ENSMUST00000159063.8	1255	8	-129	-2120	-129	0	multi-exon	TRUE	canonical	3	19	junction_4	13.8755400703864	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATTTTTGGTGTTTGTT	NA	False	NA	-4	True	AATAAA	-26	NA	48707701	48693912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48707465
ES_00026057	chr17	-	3608	10	NIC	ENSMUSG00000023994.14	novel	3653	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	14.6245185633537	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGATTTTTGGTGTTT	NA	False	NA	-7	True	AATAAA	-23	NA	48716769	48693915	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
ES_00026058	chr17	-	1761	7	FSM	ENSMUSG00000039316.15	ENSMUST00000156094.2	1759	7	0	-2	0	2	multi-exon	FALSE	canonical	3	80	junction_1	10.0457287772798	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGTCATAGTAAGAGCTA	NA	False	NA	NA	False	AATAAA	-16	NA	50497525	50343648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_50344085_50354324_50354529_50362264_50362656_50393595_50393705_50414097_50414285_50476030_50476188_50497248
ES_00026061	chr17	-	3994	17	FSM	ENSMUSG00000023923.11	ENSMUST00000225252.2	4150	17	9	147	-8	-147	multi-exon	FALSE	canonical	2	18	junction_7	4.02919036532155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAACCATGCCTGGAGCT	NA	False	NA	NA	False	NA	NA	NA	51486371	51104901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
ES_00026062	chr17	-	6231	11	FSM	ENSMUSG00000023927.16	ENSMUST00000144331.8	6243	11	0	12	0	-11	multi-exon	FALSE	canonical	3	5	junction_10	18.7245827723877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAACATGAGCAACATT	NA	False	NA	NA	False	AATAAA	-19	NA	52139700	52043226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52139497
ES_00026064	chr17	-	3623	12	NNC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	-2413	-2	intron_retention	FALSE	canonical	2	16	junction_3	7.6763024845762	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAATGTCCTGGTTTTGC	NA	False	NA	-6	True	ATTAAA	-12	NA	53772762	53705918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53772533
ES_00026065	chr17	-	422	3	FSM	ENSMUSG00000023940.15	ENSMUST00000144474.8	506	3	0	84	0	63	multi-exon	FALSE	canonical	3	305	junction_1	65.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTCTTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	53996314	53994671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_53994887_53995017_53995149_53996238
ES_00026066	chr17	-	329	2	Intergenic	novelGene_1830	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTACAATGACTTCTGAGG	NA	False	NA	NA	False	NA	NA	NA	54004671	53996962	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_53997053_54004432
ES_00026067	chr17	-	1375	9	FSM	ENSMUSG00000003200.11	ENSMUST00000233803.2	1375	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	231.47678069301	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAAGCAGAGGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	56343576	56324263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56324737_56324843_56324901_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ES_00026068	chr17	-	5244	21	NIC	ENSMUSG00000001229.10	novel	3374	21	NA	NA	0	446	intron_retention	FALSE	canonical	3	13	junction_4	38.0818526335051	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACGTGGGTAAGCCGCT	NA	False	NA	NA	False	ATTAAA	-25	NA	56525905	56493360	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_56494462_56495267_56495380_56496322_56496466_56496761_56496881_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408
ES_00026070	chr17	-	3384	21	FSM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	0	-10	0	0	multi-exon	FALSE	canonical	3	103	junction_20	12.6925174807837	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56525889	56493806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
ES_00026071	chr17	-	2196	9	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	0	25637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.024037072642	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATTACAGGTGGGCTC	NA	False	NA	NA	False	NA	NA	NA	56597511	56558838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56558877_56585962_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ES_00026072	chr17	-	884	3	FSM	ENSMUSG00000073380.3	ENSMUST00000097303.3	1056	3	0	172	0	85	multi-exon	FALSE	canonical	1	1	junction_2	4	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGTCACGATTCACCTC	2710	False	NA	NA	False	NA	NA	NA	56607286	56601282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56601665_56604826_56605033_56606990
ES_00026073	chr17	-	1617	3	FSM	ENSMUSG00000013236.18	ENSMUST00000223685.2	711	3	-33	-873	-33	0	multi-exon	FALSE	canonical	3	288	junction_2	18	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGAGTGCTCCTTAAT	NA	False	NA	0	True	ATTAAA	-21	NA	56721463	56719425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56720394_56720728_56720865_56720950
ES_00026078	chr17	-	527	5	NNC	ENSMUSG00000049760.7	novel	755	4	NA	NA	0	57819	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.865742332698	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAACAGGGAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	56916682	56856632	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56856664_56914621_56914842_56915637_56915693_56915845_56916024_56916639
ES_00026079	chr17	-	1203	4	FSM	ENSMUSG00000110218.2	ENSMUST00000209718.2	1269	4	66	0	66	0	multi-exon	FALSE	canonical	1	1	junction_1	0.471404520791032	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTGTGACCTGGCTTC	NA	False	NA	NA	False	AATAAA	-20	NA	56861321	56858413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56858990_56859687_56859997_56860448_56860563_56861117
ES_00026080	chr17	-	2633	3	FSM	ENSMUSG00000042625.17	ENSMUST00000124111.8	2636	3	0	3	0	-3	multi-exon	FALSE	canonical	3	209	junction_1	15	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTGTTAGTTTTTAT	2873	False	NA	NA	False	ATTAAA	-12	NA	56871567	56867975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56870432_56870511_56870625_56871503
ES_00026081	chr17	-	2915	9	NNC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	0	-3	intron_retention	FALSE	canonical	3	14	junction_7	72.8727486787757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTTCTGCTGCCAGGC	5179	False	NA	-1	True	AATAAA	-28	NA	56878677	56869941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878204_56878320_56878399
ES_00026084	chr17	-	303	2	FSM	ENSMUSG00000049760.7	ENSMUST00000233386.2	303	2	0	0	0	0	multi-exon	FALSE	canonical	3	1891	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTCTGGGTTTGGGAGA	NA	False	NA	NA	False	NA	NA	NA	56916682	56915763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56916024_56916639
ES_00026085	chr17	-	1932	6	NNC	ENSMUSG00000024206.16	novel	4141	5	NA	NA	-91	-1849	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	106.679707536157	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGCACACCTTTAATTC	NA	False	NA	NA	False	AATAAA	-16	NA	57138104	57108757	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_57109953_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
ES_00026086	chr17	-	658	4	ISM	ENSMUSG00000024206.16	ENSMUST00000233643.2	4141	5	-165	4234	-91	-4234	5prime_fragment	FALSE	canonical	3	258	junction_2	15.2970585407784	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGTCATAGGCCCCTGA	NA	False	NA	-6	True	AATAAA	-9	NA	57138104	57111142	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_57111397_57112357_57112448_57115233_57115326_57137882
ES_00026089	chr17	-	2013	4	FSM	ENSMUSG00000062591.6	ENSMUST00000071135.6	2228	4	198	17	198	-17	multi-exon	TRUE	canonical	0	0	junction_2	1.24721912892465	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTCATTGCTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	57394584	57387082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57388748_57392991_57393103_57393230_57393340_57394456
ES_00026090	chr17	-	666	5	FSM	ENSMUSG00000005823.10	ENSMUST00000233492.2	716	5	50	0	50	0	multi-exon	FALSE	canonical	3	7	junction_4	83.5983701994243	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCCAGGTGGCCTGCA	NA	False	NA	NA	False	NA	NA	NA	57555396	57551246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57555106
ES_00026091	chr17	-	316	1	FSM	ENSMUSG00000098123.2	ENSMUST00000182638.2	718	1	582	-180	582	180	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCCAAAAAACCTAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	62088045	62087729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_62087700_62088000
ES_00026092	chr17	-	210	2	NNC	ENSMUSG00000045036.16	novel	1165	5	NA	NA	41364	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGCACACATCTTTAT	2761	False	NA	NA	False	NA	NA	NA	65702026	65686159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_65686174_65701830
ES_00026093	chr17	-	626	1	FSM	ENSMUSG00000117300.2	ENSMUST00000233888.2	570	1	350	-406	350	406	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3144	False	NA	NA	False	NA	NA	NA	65745342	65744716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_65744700_65745300
ES_00026095	chr17	-	4020	6	NNC	ENSMUSG00000024098.7	novel	4086	5	NA	NA	0	98502	intron_retention	FALSE	canonical	0	0	junction_1	107.46422660588	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGATAAAGCACTCACACAC	8783	False	NA	NA	False	NA	NA	NA	66258132	66130464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66130492_66230063_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
ES_00026096	chr17	-	4090	6	NNC	ENSMUSG00000024098.7	novel	4086	5	NA	NA	25	98502	intron_retention	FALSE	non_canonical	0	0	junction_1	107.46422660588	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGATAAAGCACTCACACAC	8719	False	NA	NA	False	NA	NA	NA	66258196	66130464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66130494_66230059_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
ES_00026098	chr17	-	536	4	FSM	ENSMUSG00000024099.16	ENSMUST00000138847.8	699	4	163	0	163	0	multi-exon	FALSE	canonical	3	4079	junction_1	133.897971107357	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGAATACTTCATTTCT	NA	False	NA	7	True	NA	NA	NA	66399045	66394397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66394567_66396226_66396344_66396425_66396489_66398858
ES_00026099	chr17	-	393	2	Intergenic	novelGene_1853	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	3	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCCTGAAATTGGCAAAAT	7945	False	NA	NA	False	NA	NA	NA	66511795	66410472	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_66410670_66511599
ES_00026101	chr17	-	311	1	FSM	ENSMUSG00000117246.2	ENSMUST00000232894.2	779	1	373	95	373	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGATGAAAATAACTTGGC	NA	False	NA	NA	False	NA	NA	NA	66534649	66534338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66534300_66534600
ES_00026102	chr17	-	7589	15	Fusion	ENSMUSG00000052105.18_ENSMUSG00000117010.2	novel	7274	15	NA	NA	0	285	multi-exon	FALSE	non_canonical	0	0	junction_1	51.0094529054595	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGTTCTCCAGGCTCGA	NA	False	NA	NA	False	NA	NA	NA	66756745	66625785	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_66626156_66643978_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ES_00026104	chr17	-	7292	15	NIC	ENSMUSG00000052105.18	novel	7274	15	NA	NA	50	-2	combination_of_known_junctions	FALSE	canonical	3	31	junction_8	55.073235100998	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTCTTGGTGTCACCGT	NA	False	NA	-15	True	AATAAA	-19	NA	66756695	66643978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66678317_66678441_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ES_00026105	chr17	-	1968	6	NNC	ENSMUSG00000023460.14	novel	2010	6	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	94.309278440671	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAATTTGCCGTGTGTTT	NA	False	NA	-4	True	AATAAA	-22	NA	66826627	66801506	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66813027_66813089_66826346
ES_00026107	chr17	-	714	4	FSM	ENSMUSG00000023460.14	ENSMUST00000135620.2	381	4	-333	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	98.0827315189694	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGATGACTTGCCAAAGTG	NA	False	NA	NA	False	NA	NA	NA	66826705	66807343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66807444_66811983_66812174_66813027_66813089_66826342
ES_00026108	chr17	-	491	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	26	441	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	10.0591997693654	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGCTTGTAGCCAGAATA	NA	False	NA	NA	False	NA	NA	NA	69584177	69581915	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_69582041_69582162_69582295_69582786_69582902_69583120_69583191_69584128
ES_00026115	chr17	-	1226	2	FSM	ENSMUSG00000024053.12	ENSMUST00000233083.2	479	2	-16	-731	-16	0	multi-exon	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	71562417	71559166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71560089_71562113
ES_00026116	chr17	-	348	2	FSM	ENSMUSG00000024054.15	ENSMUST00000136071.2	411	2	63	0	63	0	multi-exon	FALSE	canonical	3	167	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTAAAAGGAGGAAAAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	71698659	71697475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71697511_71698346
ES_00026117	chr17	-	515	1	FSM	ENSMUSG00000103558.2	ENSMUST00000195774.2	1447	1	909	23	909	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAAGAAGGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	71699370	71698855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71698900_71699400
ES_00026118	chr17	-	1616	1	FSM	ENSMUSG00000091831.7	ENSMUST00000171504.6	1616	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTCTGCACTGACCCCTC	NA	False	NA	NA	False	NA	NA	NA	71766913	71765297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71765300_71766900
ES_00026119	chr17	-	920	1	FSM	ENSMUSG00000117257.2	ENSMUST00000233573.2	920	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	345	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTCCTCAGGGGATCAG	9776	False	NA	-106	True	NA	NA	NA	74178345	74177425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74177400_74178300
ES_00026121	chr17	-	543	1	FSM	ENSMUSG00000117202.2	ENSMUST00000232994.2	356	1	67	-254	67	254	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTAATTATAATTTTAAAAA	NA	False	NA	NA	False	ATTAAA	-29	NA	74636816	74636273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74636300_74636800
ES_00026122	chr17	-	467	1	FSM	ENSMUSG00000117187.2	ENSMUST00000233026.2	355	1	-29	-83	-29	83	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACACCAAAGAAGGGGGG	NA	False	NA	NA	False	AATAAA	-40	NA	74745663	74745196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74745200_74745700
ES_00026123	chr17	-	410	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	261	2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	41.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATTGGTCTCAGTGTTCC	NA	False	NA	-3	True	AATAAA	-16	NA	74834378	74826657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_74826911_74830509_74830574_74834285
ES_00026126	chr17	-	621	3	FSM	ENSMUSG00000002017.11	ENSMUST00000141969.2	621	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	16	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGTCATGCCGGTGTG	NA	False	NA	NA	False	GGGGCT	-3	NA	75858791	75851461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_75851878_75854605_75854755_75858735
ES_00026127	chr17	-	553	1	FSM	ENSMUSG00000091058.3	ENSMUST00000168236.3	325	1	1	-229	1	229	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAGGTGTATATAATATA	NA	False	NA	NA	False	AATAAA	-25	NA	77981693	77981140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_77981100_77981700
ES_00026128	chr17	-	521	2	FSM	ENSMUSG00000117648.2	ENSMUST00000234450.2	528	2	11	-4	11	4	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTTTGTGGCGAGACAT	NA	False	NA	NA	False	AATAAA	-18	NA	78507443	78506680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_78506781_78507022
ES_00026129	chr17	-	2000	9	FSM	ENSMUSG00000056121.17	ENSMUST00000112487.3	2041	9	41	0	-15	0	multi-exon	FALSE	canonical	2	4	junction_4	124.244718197596	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725540	78685313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78694419_78694501_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
ES_00026130	chr17	-	7971	19	NNC	ENSMUSG00000024077.16	novel	8629	18	NA	NA	626	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.3363197596069	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATGTGCTCCTAGGTGT	NA	False	NA	-10	True	AATAAA	-14	NA	79043999	78957341	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_78959612_78959643_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550_78974688_78977179_78977324_78980004_78980116_78984710_78984847_78990256_78990393_78991658_78991827_78995020_78995100_78999822_78999897_79008278_79008383_79043682
ES_00026132	chr17	-	1948	7	FSM	ENSMUSG00000038045.15	ENSMUST00000169544.8	2060	7	112	0	19	0	multi-exon	FALSE	canonical	1	1	junction_6	86.9770084562581	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACCTAGAATGGAAT	NA	False	NA	NA	False	AAGAAA	-36	NA	79214309	79191366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79204986_79205077_79212937_79213051_79214222
ES_00026133	chr17	-	2824	7	NNC	ENSMUSG00000038045.15	novel	2060	7	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	88.3301886232687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79214309	79192325	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136_79202099_79204986_79205077_79212937_79213051_79214222
ES_00026134	chr17	-	498	3	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	13	-1	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAATTGGAACATTGCT	NA	False	NA	-17	True	ATTAAA	-15	NA	79202516	79192326	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_79192646_79201971_79202099_79202464
ES_00026135	chr17	-	960	3	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	12	-1	intron_retention	FALSE	canonical	3	21	junction_1	60	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAATTGGAACATTGCT	NA	False	NA	-17	True	ATTAAA	-15	NA	79202517	79192326	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_79192646_79198274_79198370_79201971
ES_00026136	chr17	-	2869	3	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	0	-1	intron_retention	FALSE	canonical	1	3	junction_2	108.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAATTGGAACATTGCT	NA	False	NA	-17	True	ATTAAA	-15	NA	79202529	79192326	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_79192646_79196359_79196517_79200136
ES_00026137	chr17	-	831	1	FSM	ENSMUSG00000117047.2	ENSMUST00000232946.2	640	1	2	-193	2	193	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACCCTCCTCAAAAAAA	NA	False	NA	NA	False	AATATA	-6	NA	79565476	79564645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_79564600_79565500
ES_00026139	chr17	-	1023	8	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ES_00026140	chr17	-	4194	33	NIC	ENSMUSG00000024242.16	novel	4220	34	NA	NA	-35	-7	combination_of_known_splicesites	FALSE	canonical	3	18	junction_16	56.7851969596831	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACATGCTGTTGCGTAG	NA	False	NA	-11	True	AATAAA	-8	NA	81035557	80887952	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925985_80926025_80931484_80931544_80936714_80936778_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ES_00026141	chr17	-	3995	34	NNC	ENSMUSG00000024242.16	novel	4220	34	NA	NA	-87	-7	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_33	52.9802361056886	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACATGCTGTTGCGTAG	NA	False	NA	-11	True	AATAAA	-8	NA	81035609	80887952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222_81035280_81035521
ES_00026144	chr17	-	1140	1	FSM	ENSMUSG00000117507.2	ENSMUST00000234943.2	642	1	12	-510	12	510	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATATTTCCATGGAAATA	NA	False	NA	NA	False	ATTAAA	-6	NA	82500026	82498886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_82498900_82500000
ES_00026146	chr17	-	203	2	Intergenic	novelGene_1874	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	132	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTTCAAAGTCAAAACAT	NA	False	NA	NA	False	AAGAAA	-1	NA	82843451	82824218	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_82824368_82843397
ES_00026149	chr17	-	1114	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234676.2	773	6	0	-341	0	-88	multi-exon	FALSE	canonical	1	1	junction_5	72.4237530096308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAAATATTTCTGTTTC	NA	False	NA	NA	False	AATATA	-34	NA	85397669	85385574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85395871_85397533
ES_00026152	chr17	-	1797	4	NIC	ENSMUSG00000024150.13	novel	813	5	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	142.964642093382	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGACGTTGACTCTGT	NA	False	NA	1	True	AATAAA	-20	NA	87573291	87562082	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573219
ES_00026161	chr17	-	3809	23	FSM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	-1059	1003	-796	99	multi-exon	FALSE	canonical	3	18	junction_20	22.0632542949277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCGGGATTTTAGCATTA	NA	False	NA	NA	False	AATAGA	-18	NA	88373515	88299289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984_88320115_88321833_88321976_88322826_88322909_88323015_88323141_88372436
ES_00026163	chr17	+	203	1	Intergenic	novelGene_1668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGATACGTGAACAAGTA	7615	False	NA	NA	False	NA	NA	NA	5812273	5812476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_5812300_5812500
ES_00026164	chr17	+	339	1	Intergenic	novelGene_1678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGTGGTGTACTTGT	NA	False	NA	NA	False	AGTAAA	-38	NA	6759646	6759985	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6759600_6760000
ES_00026165	chr17	+	1372	1	Intergenic	novelGene_1684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCAGGCTATCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	6878293	6879665	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6878300_6879700
ES_00026166	chr17	+	223	1	Intergenic	novelGene_1688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAACATTTCTTTAGGTG	NA	False	NA	NA	False	NA	NA	NA	7283548	7283771	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_7283500_7283800
ES_00026167	chr17	+	278	1	Intergenic	novelGene_1689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACTCAATTTACATTTAT	724	False	NA	NA	False	NA	NA	NA	8507068	8507346	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_8507100_8507300
ES_00026169	chr17	+	669	1	Intergenic	novelGene_1698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTATCCAGTGGTATGC	NA	False	NA	NA	False	AATAAA	-12	NA	13993114	13993783	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_13993100_13993800
ES_00026171	chr17	+	217	1	Intergenic	novelGene_1702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTGATTCTTGAGCTT	NA	False	NA	NA	False	ATTAAA	-6	NA	16051857	16052074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_16051900_16052100
ES_00026172	chr17	+	216	1	Intergenic	novelGene_1709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTAGCTTTGATATTACT	NA	False	NA	NA	False	NA	NA	NA	17715354	17715570	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17715400_17715600
ES_00026173	chr17	+	210	1	Intergenic	novelGene_1711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCTGGCAGAGTGAGGA	NA	False	NA	NA	False	NA	NA	NA	17726423	17726633	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_17726400_17726600
ES_00026175	chr17	+	747	1	Intergenic	novelGene_1715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGTCAGACCTGTACT	NA	False	NA	NA	False	NA	NA	NA	22235490	22236237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_22235500_22236200
ES_00026176	chr17	+	389	1	Intergenic	novelGene_1717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCTCAGAGTTCAGGA	NA	False	NA	NA	False	NA	NA	NA	22236571	22236960	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_22236600_22237000
ES_00026177	chr17	+	233	1	Intergenic	novelGene_1727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGAGCCATCTCTCCAG	201	False	NA	NA	False	NA	NA	NA	24753188	24753421	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_24753200_24753400
ES_00026178	chr17	+	223	1	Intergenic	novelGene_1728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCAGCACTTGGGAGGCA	NA	False	NA	NA	False	NA	NA	NA	24944931	24945154	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_24944900_24945200
ES_00026180	chr17	+	325	1	Intergenic	novelGene_1733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCCCCCCCCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27396230	27396555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_27396200_27396600
ES_00026181	chr17	+	206	1	Intergenic	novelGene_1735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTTTAATGCTCAAATT	NA	False	NA	NA	False	NA	NA	NA	27761881	27762087	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_27761900_27762100
ES_00026182	chr17	+	203	1	Intergenic	novelGene_1736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTTGTTTTCGAGACAGG	6931	False	NA	NA	False	NA	NA	NA	27847139	27847342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_27847100_27847300
ES_00026183	chr17	+	207	1	Intergenic	novelGene_1766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAATATTTCTTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	34028871	34029078	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34028900_34029100
ES_00026185	chr17	+	228	1	Intergenic	novelGene_1773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATTGCATATCGCTG	6193	False	NA	NA	False	NA	NA	NA	34843462	34843690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34843500_34843700
ES_00026186	chr17	+	264	1	Intergenic	novelGene_1784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTTCTGTTTTCTTT	360	False	NA	NA	False	AAAAAG	-32	NA	35668029	35668293	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35668000_35668300
ES_00026187	chr17	+	264	1	Intergenic	novelGene_1787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATTGTGTTTCTTAACA	NA	False	NA	NA	False	NA	NA	NA	35749977	35750241	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35750000_35750200
ES_00026188	chr17	+	206	1	Intergenic	novelGene_1792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCTGGCTCACAACTTTA	NA	False	NA	NA	False	NA	NA	NA	35959628	35959834	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35959600_35959800
ES_00026189	chr17	+	210	1	Intergenic	novelGene_1800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTCAGCAGGGCAGGCA	NA	False	NA	NA	False	TTTAAA	-1	NA	37338677	37338887	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_37338700_37338900
ES_00026190	chr17	+	252	1	Intergenic	novelGene_1811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGCAGTGTATTCATATA	NA	False	NA	NA	False	NA	NA	NA	46074735	46074987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_46074700_46075000
ES_00026191	chr17	+	222	1	Intergenic	novelGene_1812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAGAAAAAAATTGATT	NA	False	NA	NA	False	NA	NA	NA	46092997	46093219	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_46093000_46093200
ES_00026193	chr17	+	218	1	Intergenic	novelGene_1815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	284	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGTTCTCTACACCTC	36	False	NA	NA	False	NA	NA	NA	46772851	46773069	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_46772900_46773100
ES_00026194	chr17	+	206	1	Intergenic	novelGene_1819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTTTTTAAATAGGGT	NA	False	NA	NA	False	NA	NA	NA	47128062	47128268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_47128100_47128300
ES_00026196	chr17	+	202	1	Intergenic	novelGene_1827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGATTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAGAAA	-3	NA	48370145	48370347	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_48370100_48370300
ES_00026198	chr17	+	539	1	Intergenic	novelGene_1834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAATAGAGCTCGGT	NA	False	NA	NA	False	NA	NA	NA	54212406	54212945	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54212400_54212900
ES_00026199	chr17	+	204	1	Intergenic	novelGene_1837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCGTTGGCCCATGTGGG	NA	False	NA	NA	False	NA	NA	NA	54438163	54438367	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54438200_54438400
ES_00026200	chr17	+	217	1	Intergenic	novelGene_1846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGAGTTTAAAGGTCT	1011	False	NA	NA	False	NA	NA	NA	57280186	57280403	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_57280200_57280400
ES_00026201	chr17	+	221	1	Intergenic	novelGene_1847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTTGACCTCCACACAT	NA	False	NA	NA	False	NA	NA	NA	57584819	57585040	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_57584800_57585000
ES_00026202	chr17	+	211	1	Intergenic	novelGene_1848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCATGTTTGACATGCAT	NA	False	NA	NA	False	NA	NA	NA	59421575	59421786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_59421600_59421800
ES_00026205	chr17	+	212	1	Intergenic	novelGene_1858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATCCCTCTTCCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	66899501	66899713	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_66899500_66899700
ES_00026206	chr17	+	217	1	Intergenic	novelGene_1869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGAACTTTCTCTTTGCCA	NA	False	NA	NA	False	NA	NA	NA	74965741	74965958	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_74965700_74966000
ES_00026207	chr17	+	203	1	Intergenic	novelGene_1870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCTCTTGTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75268936	75269139	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_75268900_75269100
ES_00026212	chr17	+	203	1	Intergenic	novelGene_1876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTTTTTAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	85411859	85412062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_85411900_85412100
ES_00026216	chr17	+	1085	1	FSM	ENSMUSG00000116817.2	ENSMUST00000231620.2	1148	1	-739	802	-739	-802	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCCTCAAGATGATCAAC	NA	False	NA	NA	False	NA	NA	NA	3146553	3147638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_3146600_3147600
ES_00026217	chr17	+	4863	20	NNC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	33.7657729635013	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	9446	False	NA	11	True	AATAAA	-18	NA	3165253	3249134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219604_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ES_00026219	chr17	+	734	2	Genic_Genomic	ENSMUSG00000116620.2	novel	490	1	NA	NA	0	80964	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACACCGTAGACTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	4930900	5012354	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_+_4931597_5012316
ES_00026220	chr17	+	6340	26	NNC	ENSMUSG00000023805.18	novel	4808	26	NA	NA	-218	824	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	4.53889854480137	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCCAGAGATGGGAAAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	6025642	6090489	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_6025706_6026069_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6082971_6083085_6084089_6084199_6085685_6085835_6087658
ES_00026223	chr17	+	5468	2	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	461	junction_1	0	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCCAGAGTAGCTGAGTAA	NA	False	NA	NA	False	NA	NA	NA	6843126	6848641	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6848157_6848203
ES_00026224	chr17	+	1175	3	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	352	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAGAGAGTCCTGTAAC	NA	False	NA	NA	False	NA	NA	NA	6843193	6844617	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6843908_6844123_6844258_6844290
ES_00026225	chr17	+	402	2	Antisense	novelGene_ENSMUSG00000093880.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	23	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAACATAAACTACTAATT	NA	False	NA	NA	False	NA	NA	NA	6888652	6889991	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_6888682_6889618
ES_00026226	chr17	+	615	3	FSM	ENSMUSG00000073471.4	ENSMUST00000231845.2	621	3	0	6	0	-6	multi-exon	TRUE	canonical	0	0	junction_2	33	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACGACACAGGACTGTGTG	NA	False	NA	NA	False	TTTAAA	-10	NA	8164826	8173642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_8165136_8171380_8171469_8173424
ES_00026229	chr17	+	1879	8	NIC	ENSMUSG00000062327.11	novel	2046	8	NA	NA	165	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	9.95295054191449	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTTTGTGGATTATT	NA	False	NA	5	True	AATAAA	-15	NA	8653419	8661323	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
ES_00026230	chr17	+	323	3	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	-5667	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	30	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12364991	12438532	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_12365023_12375061_12375095_12438273
ES_00026231	chr17	+	521	1	FSM	ENSMUSG00000089695.3	ENSMUST00000160654.3	423	1	-14	-84	-14	84	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTACTCTTGGTCCCT	NA	False	NA	50	True	NA	NA	NA	13181640	13182161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_13181600_13182200
ES_00026232	chr17	+	1236	7	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	7	-264	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1532.52225831217	507	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTCTGTGTGAATTGCT	NA	False	NA	44	True	ATTAAA	-32	NA	13225739	13234239	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_13225849_13226330_13226423_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ES_00026233	chr17	+	3108	1	NIC	ENSMUSG00000006818.6	novel	4057	7	NA	NA	1980	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTGGGATAATGAG	NA	False	NA	NA	False	AATAAA	-22	NA	13255842	13258950	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_13255800_13259000
ES_00026234	chr17	+	698	2	ISM	ENSMUSG00000117282.2	ENSMUST00000233603.2	599	3	-16	6696	-16	-6696	5prime_fragment	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCCATGCTAGCAAAACT	NA	False	NA	NA	False	NA	NA	NA	13414748	13416596	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_13414866_13416015
ES_00026236	chr17	+	1949	4	Fusion	ENSMUSG00000079711.5_ENSMUSG00000090211.4	novel	2463	3	NA	NA	0	-19	multi-exon	FALSE	non_canonical	0	0	junction_1	2.82842712474619	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGATGTTTGTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	13721215	13748676	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_13721317_13736994_13738577_13748382_13748495_13748522
ES_00026237	chr17	+	6159	32	NNC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	1	251	at_least_one_novel_splicesite	FALSE	canonical	1	43	junction_28	84.1601342667173	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGGATTTAAGCCTAG	NA	False	NA	NA	False	NA	NA	NA	13980801	14124882	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_13981041_14024200_14024397_14027541_14027655_14029193_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116355_14116485_14119206_14119490_14122791_14122877_14124115
ES_00026240	chr17	+	1466	2	FSM	ENSMUSG00000050088.10	ENSMUST00000174004.2	1466	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163530	15165248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15163582_15163833
ES_00026241	chr17	+	887	6	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	407	5727	-2	-4196	5prime_fragment	FALSE	canonical	3	116	junction_1	50.4126968134021	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCGAGGCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	15199136	15205440	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079
ES_00026242	chr17	+	2551	18	NIC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	59.4887678037601	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15261848	15284485	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
ES_00026243	chr17	+	807	6	FSM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	-19	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	84.7216619289305	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCCTCTGAATGGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	15261876	15266171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15265897
ES_00026245	chr17	+	4745	17	NNC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	64.9315745612256	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15262509	15284485	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15281587
ES_00026247	chr17	+	1669	8	NIC	ENSMUSG00000036552.20	novel	1342	8	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	36.4809147754979	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCTATGTTGCCTTTC	NA	False	NA	10	True	ATTAAA	-23	NA	15273097	15284490	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ES_00026248	chr17	+	8183	36	NNC	ENSMUSG00000023852.15	novel	7916	36	NA	NA	-267	4	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	68.2379629812961	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTCTGCTATGTGAG	NA	False	NA	NA	False	AATAAA	-27	NA	15924961	15992876	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_15925575_15927201_15927402_15945534_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182_15975344_15977021_15977064_15977878_15978010_15978536_15978676_15978843_15978995_15980589_15980713_15981540_15981670_15982643_15982785_15985104_15985284_15986592_15986690_15987711_15987767_15988827_15989039_15990239
ES_00026249	chr17	+	3226	7	ISM	ENSMUSG00000023852.15	ENSMUST00000173159.2	1372	8	24	-1064	24	1064	intron_retention	FALSE	canonical	3	308	junction_1	30.926885103777	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCTCACAGCTCATTCC	NA	False	NA	NA	False	AATAAA	-13	NA	15925303	15953234	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010
ES_00026250	chr17	+	504	1	FSM	ENSMUSG00000116958.2	ENSMUST00000231260.2	685	1	15	166	15	-166	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCATTTTGGAGCTGCT	3594	False	NA	NA	False	NA	NA	NA	17067671	17068175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17067700_17068200
ES_00026251	chr17	+	2430	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-59113	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	51.0783711564885	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17225261	17309890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17225539_17257537_17257665_17257906_17257968_17307505_17308958_17309377
ES_00026252	chr17	+	483	2	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-67	-19628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTTTTTGTTTTTTGGT	NA	False	NA	NA	False	ATTAAA	-25	NA	17284307	17290262	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17284469_17289940
ES_00026253	chr17	+	2264	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	106.167320772449	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366285_17366704
ES_00026254	chr17	+	2682	6	FSM	ENSMUSG00000047786.13	ENSMUST00000115576.3	3116	6	210	224	210	-224	multi-exon	FALSE	canonical	0	0	junction_5	1.74355957741627	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCCACCACTGCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	17623143	17679425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_17623289_17647417_17647582_17663909_17664051_17666229_17666326_17674521_17674600_17677367
ES_00026255	chr17	+	3236	1	FSM	ENSMUSG00000080316.12	ENSMUST00000178056.2	4074	1	16	822	16	50	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGTGTTCTGAATCCAG	NA	False	NA	NA	False	NA	NA	NA	18053229	18056465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_18053200_18056500
ES_00026257	chr17	+	506	1	FSM	ENSMUSG00000117037.2	ENSMUST00000233488.2	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTGAGTCAGGGTAGCA	NA	False	NA	NA	False	NA	NA	NA	21750541	21751047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_21750500_21751000
ES_00026258	chr17	+	2552	7	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	39.6880194629171	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787269	21808961	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807255_21807354
ES_00026259	chr17	+	1405	6	NIC	ENSMUSG00000061544.14	novel	640	6	NA	NA	-96	634	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	67.9923525111464	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCTTTACCTGTG	NA	False	NA	4	True	AATAAA	-17	NA	21949679	21988957	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21988273
ES_00026260	chr17	+	1606	3	FSM	ENSMUSG00000053347.16	ENSMUST00000153985.8	1598	3	-8	0	-1	0	multi-exon	FALSE	canonical	3	19	junction_1	3	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCACTGGTTGATACTT	NA	False	NA	NA	False	AGTAAA	-15	NA	22181531	22211025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_22181801_22207011_22207083_22209759
ES_00026261	chr17	+	2368	4	FSM	ENSMUSG00000023902.19	ENSMUST00000115509.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	114.030210422014	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_23819934_23824478_23824939_23827081_23827140_23828240
ES_00026263	chr17	+	231	2	FSM	ENSMUSG00000043782.10	ENSMUST00000233930.2	854	2	623	0	623	0	multi-exon	FALSE	canonical	2	2	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCCCAGCCTTCAATACA	4844	False	NA	NA	False	NA	NA	NA	23885722	23886066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_23885921_23886033
ES_00026264	chr17	+	216	1	Intergenic	novelGene_1724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCACCATGCCCGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	24014052	24014268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_24014100_24014300
ES_00026265	chr17	+	1100	1	FSM	ENSMUSG00000095266.3	ENSMUST00000178572.3	508	1	-351	-241	-351	241	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATATCACAATATAGACAT	NA	False	NA	NA	False	TATAAA	-9	NA	24242396	24243496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24242400_24243500
ES_00026266	chr17	+	341	3	FSM	ENSMUSG00000034681.18	ENSMUST00000234089.2	341	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	513.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTCCGGCTCCCCAA	4408	False	NA	NA	False	NA	NA	NA	24637143	24639305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24637203_24637430_24637587_24639179
ES_00026267	chr17	+	474	2	FSM	ENSMUSG00000024132.7	ENSMUST00000234731.2	540	2	-222	288	-9	-288	multi-exon	FALSE	canonical	3	503	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAGTAGGAACCTGGAA	4831	False	NA	NA	False	NA	NA	NA	24645605	24652272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24645914_24652106
ES_00026269	chr17	+	5084	20	NNC	ENSMUSG00000033597.10	novel	5938	20	NA	NA	11	-1043	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3.55954493029704	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGGGAACCTCTGCCAG	7681	False	NA	NA	False	NA	NA	NA	24707585	24726599	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_24708038_24714939_24714992_24715072_24715192_24715399_24715546_24715627_24715724_24715837_24715969_24717831_24717941_24718034_24718144_24718226_24718322_24718476_24718595_24719670_24719773_24719864_24719954_24720033_24720119_24720203_24720308_24721089_24721201_24721290_24721393_24722774_24722914_24722993_24724995_24725496_24725912_24726090
ES_00026270	chr17	+	14060	46	FSM	ENSMUSG00000032855.7	ENSMUST00000035565.5	14164	46	104	0	104	0	multi-exon	FALSE	canonical	1	5	junction_9	8.28283961566113	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCCAGATGTGCGTGTGC	NA	False	NA	37	True	AATAAA	-42	NA	24769027	24815482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24769452_24783123_24783196_24783309_24783382_24783552_24783723_24783984_24784657_24784760_24784945_24786100_24786319_24786570_24786687_24787186_24787314_24787599_24787836_24788325_24789079_24790153_24790286_24790494_24790671_24790949_24791084_24791591_24795218_24795411_24795562_24796492_24796637_24796723_24797004_24797069_24797284_24797352_24797513_24797784_24797935_24798694_24798840_24798928_24799550_24799848_24800006_24800164_24800418_24800536_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806152_24806267_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ES_00026271	chr17	+	6681	31	FSM	ENSMUSG00000032855.7	ENSMUST00000227107.2	6681	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	9.62802621978611	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGGCCAGATGTGCGTGTG	NA	False	NA	36	True	AATAAA	-41	NA	24795517	24815481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24795562_24796492_24796637_24796723_24797004_24797069_24797284_24797352_24797513_24797784_24797935_24798694_24798840_24798928_24799550_24799848_24800006_24800164_24800418_24800536_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806152_24806267_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24810148_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ES_00026272	chr17	+	625	5	FSM	ENSMUSG00000032855.7	ENSMUST00000227836.2	702	5	77	0	77	0	multi-exon	FALSE	canonical	2	5	junction_3	5.76085931090146	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCAGGCCTGGCTGCA	544	False	NA	NA	False	NA	NA	NA	24804896	24806716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24805041_24805137_24805349_24805435_24805563_24806373_24806424_24806623
ES_00026274	chr17	+	962	5	FSM	ENSMUSG00000044533.16	ENSMUST00000146867.2	962	5	0	0	0	0	multi-exon	FALSE	canonical	2	95	junction_4	4232.31002970009	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6378	False	NA	0	True	AATAAA	-19	NA	24939224	24940899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
ES_00026275	chr17	+	637	3	FSM	ENSMUSG00000044533.16	ENSMUST00000129580.2	637	3	0	0	0	0	multi-exon	FALSE	canonical	3	10975	junction_2	36.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTACCACATAAGGGT	6950	False	NA	-58	True	NA	NA	NA	24939796	24940841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_24940277_24940596_24940689_24940776
ES_00026276	chr17	+	1370	10	NIC	ENSMUSG00000002500.16	novel	599	5	NA	NA	-15	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	4.96158079150358	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTCTGTGTGTCTG	NA	False	NA	20	True	AATAAA	-20	NA	24947132	24955119	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_24947193_24947290_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
ES_00026277	chr17	+	388	4	FSM	ENSMUSG00000024158.18	ENSMUST00000154363.8	388	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	188.170726262674	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCAATTCCCAGCAACC	NA	False	NA	NA	False	NA	NA	NA	25069549	25073108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25073054
ES_00026278	chr17	+	885	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234862.2	995	2	110	0	110	0	multi-exon	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCGCAACCTCATCAC	7283	False	NA	NA	False	NA	NA	NA	25096739	25099654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25096897_25098926
ES_00026279	chr17	+	1884	6	FSM	ENSMUSG00000038880.14	ENSMUST00000154236.2	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_5	226.408480406543	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25114096	25116476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25114463_25114635_25114679_25114761_25115733_25115825_25115928_25116001_25116115_25116187
ES_00026281	chr17	+	4699	15	FSM	ENSMUSG00000015127.15	ENSMUST00000160896.8	4787	15	88	0	88	0	multi-exon	FALSE	canonical	1	2	junction_1	16.0955374725609	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTGGATCTTTGGGC	NA	False	NA	3	True	ATTAAA	-15	NA	25407975	25453417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25407992_25408439_25408650_25418740_25418918_25420015_25420150_25424572_25424709_25427062_25427181_25428527_25428613_25429777_25429861_25432020_25432081_25437551_25437730_25447556_25447641_25448212_25448441_25449180_25449384_25449494_25449750_25450685
ES_00026282	chr17	+	1080	3	FSM	ENSMUSG00000091475.5	ENSMUST00000235022.2	1164	3	84	0	9	0	multi-exon	FALSE	canonical	1	1	junction_2	2	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCATTTATTCCCTT	3265	False	NA	13	True	AATAAA	-16	NA	25789864	25794008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_25790076_25792959_25793507_25793686
ES_00026285	chr17	+	218	1	Intergenic	novelGene_1730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	26465642	26465860	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_26465600_26465900
ES_00026286	chr17	+	879	2	FSM	ENSMUSG00000068604.5	ENSMUST00000090257.5	879	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGTTTTTATACAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	26761733	26762689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26761911_26761987
ES_00026287	chr17	+	2150	5	FSM	ENSMUSG00000001576.16	ENSMUST00000236163.2	2150	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	205.205994064501	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTGACTCTGCCTT	4320	False	NA	14	True	ATTAAA	-18	NA	26854996	26875908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_26855021_26857716_26857818_26860555_26860679_26873800_26873835_26874040
ES_00026288	chr17	+	1152	7	FSM	ENSMUSG00000024191.16	ENSMUST00000126505.3	1139	7	-13	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.097733374922	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	1994	False	NA	15	True	AATAAA	-15	NA	27000039	27011495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27000151_27001551_27001606_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ES_00026290	chr17	+	2526	14	FSM	ENSMUSG00000024193.9	ENSMUST00000237189.2	2526	14	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.73992557113158	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGGCATGAGTCATTTT	NA	False	NA	3	True	AATAAA	-13	NA	27152122	27156863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155655_27155744_27155840_27156027_27156109_27156253
ES_00026291	chr17	+	529	1	FSM	ENSMUSG00000082741.3	ENSMUST00000119573.3	346	1	-47	-136	-47	136	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACACCAGCCCTGACTCC	NA	False	NA	NA	False	NA	NA	NA	27748993	27749522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27749000_27749500
ES_00026292	chr17	+	472	2	Genic_Genomic	ENSMUSG00000082741.3	novel	346	1	NA	NA	-47	2029	multi-exon	FALSE	non_canonical	0	0	junction_1	0	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAACAGGTCCACTTC	NA	False	NA	NA	False	NA	NA	NA	27748993	27751415	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_+_27749438_27751387
ES_00026293	chr17	+	706	1	FSM	ENSMUSG00000116884.2	ENSMUST00000231475.2	1109	1	-123	526	-123	-526	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCCCGGCCCCGGAAGA	NA	False	NA	NA	False	NA	NA	NA	27783962	27784668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27784000_27784700
ES_00026294	chr17	+	4126	10	FSM	ENSMUSG00000040276.16	ENSMUST00000045896.11	4176	10	0	50	0	-50	multi-exon	TRUE	canonical	0	0	junction_1	19.6078845315467	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATCAGTTGTGACCGT	NA	False	NA	NA	False	TTTAAA	-34	NA	27874521	27930035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_27874734_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ES_00026296	chr17	+	976	7	FSM	ENSMUSG00000024217.11	ENSMUST00000232873.2	984	7	8	0	8	0	multi-exon	FALSE	canonical	1	2	junction_1	752.710306529382	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28057131	28070942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28057234_28058947_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ES_00026297	chr17	+	5635	25	NIC	ENSMUSG00000024219.17	novel	6846	25	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	18	junction_23	11.2395012740285	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCGATTTTGTTTGAATTA	4280	False	NA	11	True	CATAAA	-12	NA	28128320	28281570	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28277721_28277821_28278267_28278366_28279535
ES_00026299	chr17	+	1815	8	FSM	ENSMUSG00000007570.17	ENSMUST00000114801.9	1825	8	7	3	7	-1	multi-exon	FALSE	canonical	3	8	junction_7	56.3505790130149	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCAGGCTTGGTGGCTC	317	False	NA	10	True	AATAAA	-12	NA	28532503	28545539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28545125
ES_00026302	chr17	+	462	3	FSM	ENSMUSG00000005936.20	ENSMUST00000233064.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	69.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCCAGAGAGATTTGGAA	NA	False	NA	NA	False	NA	NA	NA	29171572	29180511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29171732_29176852_29177032_29180387
ES_00026303	chr17	+	254	2	Antisense	novelGene_ENSMUSG00000084632.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	187	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTCAAAATGACCAACTG	NA	False	NA	NA	False	NA	NA	NA	29196938	29222533	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_29196991_29222331
ES_00026304	chr17	+	246	1	Intergenic	novelGene_1744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGCTGGCCTCAAAATGA	NA	False	NA	NA	False	NA	NA	NA	29222280	29222526	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29222300_29222500
ES_00026305	chr17	+	781	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	-8	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	140.841187157735	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	468	False	NA	19	True	AATAAA	-20	NA	29487918	29520503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ES_00026306	chr17	+	692	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235040.2	685	6	-7	0	0	0	multi-exon	FALSE	canonical	2	13	junction_3	131.616716263551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACCCTGAAGTCACAGAG	497	False	NA	NA	False	NA	NA	NA	29487947	29513294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501702_29501866_29512980_29513136_29513248
ES_00026308	chr17	+	203	2	Intergenic	novelGene_1750	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTATTGATCTTAGCCCTT	8467	False	NA	NA	False	NA	NA	NA	29725598	29780237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29725628_29780063
ES_00026310	chr17	+	3443	1	ISM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	56858	1	3580	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTGCATTTGGTGTCAA	7950	False	NA	NA	False	AATAAA	-32	NA	31333518	31336961	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_31333500_31337000
ES_00026311	chr17	+	460	3	Antisense	novelGene_ENSMUSG00000024033.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	10.5	49	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGAGTCTCATCCCCTTA	4608	False	NA	NA	False	NA	NA	NA	31475652	31477617	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_31475783_31477088_31477258_31477456
ES_00026312	chr17	+	3307	19	NIC	ENSMUSG00000024036.17	novel	3389	20	NA	NA	21	9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	29.7382096150913	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCCCACATATAATAC	NA	False	NA	NA	False	AATAAA	-22	NA	31515209	31569678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
ES_00026313	chr17	+	1097	6	Intergenic	novelGene_1758	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	4.48998886412873	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGGCCTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31943273	31950745	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_31943325_31944056_31944165_31945955_31946064_31948635_31948677_31949717_31949795_31950033
ES_00026319	chr17	+	1640	10	FSM	ENSMUSG00000042099.17	ENSMUST00000234357.2	1640	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	109.894674603335	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	4519	False	NA	12	True	AATAAA	-15	NA	34036880	34041891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34036986_34037166_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ES_00026321	chr17	+	5544	9	Fusion	ENSMUSG00000051390.11_ENSMUSG00000024308.16	novel	2898	8	NA	NA	-66	0	multi-exon	FALSE	canonical	3	17	junction_1	70.2775746593463	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	NA	False	NA	12	True	AATAAA	-17	NA	34134806	34148265	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_+_34134939_34135790_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
ES_00026324	chr17	+	2529	21	NNC	ENSMUSG00000024319.19	novel	3383	20	NA	NA	205	31617	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	70.7377374532152	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAACGGAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	34175123	34217626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932_34185463_34217595
ES_00026325	chr17	+	2315	10	FSM	ENSMUSG00000039656.18	ENSMUST00000173354.9	2502	10	189	-2	-16	0	multi-exon	FALSE	canonical	3	20	junction_1	72.5503656472905	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCATTTTCTGGACTGAG	NA	False	NA	19	True	CATAAA	-19	NA	34251358	34257371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
ES_00026327	chr17	+	1019	4	ISM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	1372	1	1290	0	3prime_fragment	FALSE	canonical	2	3	junction_1	6.79869268479038	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTGTGTCCTTTTCAC	571	False	NA	NA	False	ACTAAA	-15	NA	34312685	34314207	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_34313056_34313281_34313564_34313656_34313793_34313976
ES_00026328	chr17	+	2445	12	FSM	ENSMUSG00000024339.13	ENSMUST00000025197.6	3442	12	971	26	-69	-23	multi-exon	FALSE	canonical	1	1	junction_4	2.62221910942836	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATATAAAATGCTTTT	6117	False	NA	NA	False	TATAAA	-8	NA	34423471	34435269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34423598_34424260_34424759_34424843_34424959_34427727_34427859_34428063_34428270_34430843_34431042_34431203_34431333_34432988_34433178_34433296_34433471_34433619_34433780_34434307_34434445_34434887
ES_00026329	chr17	+	704	5	FSM	ENSMUSG00000034254.18	ENSMUST00000174041.8	832	5	128	0	128	0	multi-exon	FALSE	canonical	1	1	junction_1	52.9923343513003	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGATCACAGCATCTGC	NA	False	NA	NA	False	NA	NA	NA	34823363	34830671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34823465_34829418_34829619_34829845_34829980_34830247_34830424_34830578
ES_00026330	chr17	+	1108	7	FSM	ENSMUSG00000034254.18	ENSMUST00000173973.8	1105	7	-3	0	-3	0	multi-exon	FALSE	canonical	1	5	junction_3	44.7688507781917	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTTCTTCCTCCCTGTA	NA	False	NA	NA	False	NA	NA	NA	34824831	34831417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_34825146_34829418_34829619_34829845_34829901_34830247_34830424_34830578_34830675_34830764_34830841_34831226
ES_00026331	chr17	+	4066	27	NIC	ENSMUSG00000013787.16	novel	4026	27	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_13	93.2398764274868	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	7162	False	NA	19	True	AATAAA	-20	NA	35117936	35133027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125928_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ES_00026332	chr17	+	371	2	ISM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	11216	80	11216	0	3prime_fragment	FALSE	canonical	3	35	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTATGGCTTTATTTT	5605	False	NA	NA	False	ATTAAA	-23	NA	35147910	35149332	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_35148040_35149090
ES_00026334	chr17	+	1567	2	FSM	ENSMUSG00000007050.18	ENSMUST00000172523.2	1586	2	-18	37	-18	-37	multi-exon	FALSE	canonical	3	1192	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACCAAACAAACA	65	False	NA	NA	False	NA	NA	NA	35200819	35202920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35201062_35201595
ES_00026335	chr17	+	921	6	NNC	ENSMUSG00000007050.18	novel	873	5	NA	NA	-8	85441	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	743.601667561336	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGAACATTTCGGTAGTG	227	False	NA	NA	False	NA	NA	NA	35201088	35290308	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392_35204868_35290276
ES_00026336	chr17	+	1169	3	ISM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	-69	-254	-40	0	intron_retention	FALSE	canonical	3	186	junction_1	151	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295837	35297780	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_35295967_35296110_35296183_35296812
ES_00026337	chr17	+	273	1	Intergenic	novelGene_1780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATGGATACACACACAAA	NA	False	NA	NA	False	NA	NA	NA	35306558	35306831	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35306600_35306800
ES_00026338	chr17	+	2268	3	FSM	ENSMUSG00000043311.8	ENSMUST00000061859.7	2142	3	-42	-84	-29	84	multi-exon	FALSE	canonical	0	0	junction_2	1	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGGGTCAAAGTGGAGAA	2138	False	NA	107	True	NA	NA	NA	35345319	35347915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35345427_35345618_35345762_35345897
ES_00026339	chr17	+	3735	25	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_4	178.059739507092	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8802	False	NA	15	True	AATAAA	-16	NA	35354467	35366281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ES_00026341	chr17	+	220	2	Antisense	novelGene_ENSMUSG00000064853.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35369905	35388561	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_35369992_35388427
ES_00026342	chr17	+	844	6	FSM	ENSMUSG00000019432.16	ENSMUST00000174757.8	759	6	-85	0	-53	0	multi-exon	FALSE	canonical	3	59	junction_1	884.111395696266	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAAAGAGATCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	35460668	35468001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926
ES_00026344	chr17	+	1223	1	FSM	ENSMUSG00000091655.4	ENSMUST00000174736.2	384	1	-57	-782	-57	782	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTAAAGGCTGTATTTC	2653	False	NA	NA	False	AATAAA	-41	NA	35554827	35556050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35554800_35556000
ES_00026345	chr17	+	456	2	NNC	ENSMUSG00000055413.13	novel	172	3	NA	NA	438	773	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTGTCACTGAGCTAT	NA	False	NA	NA	False	AATAAA	-23	NA	35616743	35617549	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_35616777_35617126
ES_00026346	chr17	+	4208	3	FSM	ENSMUSG00000060550.17	ENSMUST00000173788.2	4209	3	1	0	1	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCTGTGTCACTGAGCT	8351	False	NA	NA	False	AATAAA	-25	NA	35658183	35662745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35658261_35658427_35658698_35658884
ES_00026347	chr17	+	994	4	FSM	ENSMUSG00000024406.17	ENSMUST00000173934.8	994	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	1747.14109332933	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGTGAGTGCCAAGATC	4500	False	NA	NA	False	NA	NA	NA	35818378	35821031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_35818967_35819999_35820121_35820304_35820436_35820877
ES_00026349	chr17	+	3413	20	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	-57	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	390.084236942942	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTGAAAACCTGCCTTAT	NA	False	NA	42	True	AATGAA	-32	NA	36190653	36203552	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196890_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ES_00026350	chr17	+	1021	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	400.503017050642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACCTGCCTTATGTCA	7384	False	NA	46	True	AATGAA	-36	NA	36198829	36203556	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_36198890_36198975_36199124_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ES_00026351	chr17	+	1654	4	NNC	ENSMUSG00000036036.16	novel	1991	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1475.04508405676	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTTGTATTTGTTTTT	NA	False	NA	39	True	AATAAA	-44	NA	37313437	37321527	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_37313632_37315688_37315796_37316950_37317087_37320310
ES_00026352	chr17	+	1826	5	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	121	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	1403.50810471475	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTATTATTAATTAGCAC	NA	False	NA	NA	False	AAAAAG	-18	NA	37313445	37321648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_37313652_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ES_00026353	chr17	+	315	1	FSM	ENSMUSG00002076600.1	ENSMUST00020182768.1	248	1	109	-176	109	176	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCACATGGTTGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	37326343	37326658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_37326300_37326700
ES_00026354	chr17	+	7325	19	NIC	ENSMUSG00000024462.18	novel	5248	23	NA	NA	-67	0	intron_retention	FALSE	canonical	3	39	junction_7	19.5540561293843	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACTGTCCTGTGAACTG	NA	False	NA	40	True	AATAAA	-28	NA	37356790	37385196	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ES_00026357	chr17	+	991	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113430.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_1	404.985047734961	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTCACTTGGGAGG	NA	False	NA	35	True	AATAAA	-24	NA	46957195	46961065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46957325_46958321_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
ES_00026358	chr17	+	756	4	FSM	ENSMUSG00000002768.9	ENSMUST00000232732.2	748	4	-8	0	-8	0	multi-exon	FALSE	canonical	3	20	junction_1	423.826222249953	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCCAGCCCACCTTAG	NA	False	NA	-69	True	NA	NA	NA	46991375	46993963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_46991429_46992542_46992824_46992934_46993038_46993644
ES_00026359	chr17	+	7055	18	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16092	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	15.6486067345807	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGAGGTGCATTCCTTA	2001	False	NA	NA	False	AATAAA	-20	NA	47507220	47672883	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834_47670689_47670708
ES_00026360	chr17	+	7051	17	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16092	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	15.165235738359	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGAGGTGCATTCCTTA	2001	False	NA	NA	False	AATAAA	-20	NA	47507220	47672883	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630545_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664622_47664871_47669834
ES_00026361	chr17	+	1545	1	FSM	ENSMUSG00000096361.3	ENSMUST00000177586.3	375	1	-110	-1060	-110	1060	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCAGTTAGCTGTGGAT	NA	False	NA	NA	False	AATAAA	-36	NA	47721177	47722722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47721200_47722700
ES_00026362	chr17	+	2639	7	FSM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	-69	5682	-69	0	multi-exon	FALSE	canonical	2	4	junction_1	48.3861780080037	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47941545	47991981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_47941841_47960874_47960949_47982968_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ES_00026364	chr17	+	460	2	FSM	ENSMUSG00000051682.16	ENSMUST00000153131.2	513	2	53	0	53	0	multi-exon	FALSE	canonical	1	2	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCTCTACCGAAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	48579519	48581540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_48579847_48581407
ES_00026365	chr17	+	1786	5	FSM	ENSMUSG00000043592.16	ENSMUST00000161587.8	1786	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.7092249953019	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATACTGGTACTTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	48769362	48775708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_48769467_48770389_48770492_48771469_48771571_48771943_48772058_48774343
ES_00026366	chr17	+	212	2	Intergenic	novelGene_1829	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCAATGAGTTAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	52197737	52217454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_52197761_52217265
ES_00026368	chr17	+	295	1	FSM	ENSMUSG00000117237.2	ENSMUST00000233377.2	1411	1	804	312	804	-312	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGAGAGATCTTCAAGGA	2518	False	NA	NA	False	NA	NA	NA	56008210	56008505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56008200_56008500
ES_00026369	chr17	+	284	1	FSM	ENSMUSG00000003208.10	ENSMUST00000233204.2	3557	1	3104	169	3052	-169	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCGCAAGCACAAAAGCC	3446	False	NA	NA	False	NA	NA	NA	56269275	56269559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56269300_56269600
ES_00026370	chr17	+	350	4	FSM	ENSMUSG00000003199.17	ENSMUST00000159420.2	350	4	0	0	0	0	multi-exon	FALSE	canonical	3	845	junction_1	54.0760780957923	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCCCCCAGGCT	NA	False	NA	NA	False	NA	NA	NA	56318942	56322120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_56318963_56319270_56319344_56319415_56319493_56321940
ES_00026371	chr17	+	934	1	Intergenic	novelGene_1841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTCACCAGCCCAAATACA	NA	False	NA	NA	False	NA	NA	NA	56570760	56571694	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_56570800_56571700
ES_00026372	chr17	+	4735	24	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	40.7135319325118	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4839	False	NA	12	True	ATTAAA	-28	NA	56633003	56709864	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ES_00026373	chr17	+	1506	11	NNC	ENSMUSG00000040828.11	novel	1617	12	NA	NA	704	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	4.00124980474851	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCAGGTTGCTAAGTGCC	NA	False	NA	15	True	AATAAA	-16	NA	56959485	56971457	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_56959564_56960579_56960757_56962096_56962187_56962988_56963048_56965072_56965152_56966528_56966582_56967170_56967246_56968241_56968371_56969661_56969846_56970267_56970426_56971033
ES_00026376	chr17	+	536	1	FSM	ENSMUSG00000117256.2	ENSMUST00000233628.2	346	1	11	-201	11	201	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	AATAAA	-13	NA	63877908	63878444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_63877900_63878400
ES_00026378	chr17	+	805	2	FSM	ENSMUSG00000035842.11	ENSMUST00000223801.2	805	2	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGCTATAAATGCCC	NA	False	NA	NA	False	NA	NA	NA	66445919	66447047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66446070_66446392
ES_00026379	chr17	+	1467	1	FSM	ENSMUSG00000117003.2	ENSMUST00000233518.2	2746	1	1278	1	1278	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGCGTGCTTTGACTAA	NA	False	NA	NA	False	NA	NA	NA	66758126	66759593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_66758100_66759600
ES_00026380	chr17	+	6210	32	ISM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	-52	40177	-52	25558	intron_retention	FALSE	canonical	3	108	junction_11	22.5684759835618	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTTTATGCCAAAGAT	NA	False	NA	NA	False	AATAAA	-22	NA	68004201	68089465	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_+_68004412_68023688_68023860_68024156_68024270_68044468_68044712_68045705_68045886_68049019_68049110_68050269_68050388_68052040_68052220_68052844_68052951_68053742_68053904_68055038_68055180_68057511_68057686_68059376_68059479_68059772_68059985_68060745_68060858_68063661_68063773_68068597_68068726_68070765_68070853_68071624_68071837_68073947_68074055_68074379_68074561_68075294_68075432_68076374_68076612_68077950_68078095_68079656_68079837_68080681_68080868_68081458_68081587_68082765_68082887_68083902_68084041_68086043_68086166_68087523_68087611_68087873
ES_00026381	chr17	+	7742	18	NIC	ENSMUSG00000024044.20	novel	3188	20	NA	NA	17	1	intron_retention	FALSE	canonical	3	29	junction_17	10.777074218902	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCTCGTCTTCCATGT	NA	False	NA	17	True	AATAAA	-18	NA	69463869	69596981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
ES_00026382	chr17	+	209	1	Intergenic	novelGene_1862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAAGTGCTCTTAACCAC	NA	False	NA	NA	False	NA	NA	NA	71004097	71004306	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_71004100_71004300
ES_00026384	chr17	+	327	2	NNC	ENSMUSG00000100865.3	novel	443	4	NA	NA	-5069	60	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCGGTGGTGGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	71177765	71183020	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_71177840_71182767
ES_00026385	chr17	+	231	1	Intergenic	novelGene_1866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAATCTATAATATT	NA	False	NA	NA	False	NA	NA	NA	71896548	71896779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_71896500_71896800
ES_00026386	chr17	+	276	1	FSM	ENSMUSG00000093289.3	ENSMUST00000175548.3	85	1	64	-255	64	255	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAGCAAGATCTTGTC	NA	False	NA	NA	False	NA	NA	NA	71938339	71938615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_71938300_71938600
ES_00026387	chr17	+	459	6	FSM	ENSMUSG00000041057.11	ENSMUST00000235094.2	459	6	0	0	0	0	multi-exon	FALSE	canonical	3	1489	junction_4	74.0470120936693	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACCTCTCCCGGACA	NA	False	NA	16	True	NA	NA	NA	71949690	71960471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447
ES_00026388	chr17	+	2920	8	FSM	ENSMUSG00000024059.11	ENSMUST00000230160.2	2920	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	19.6167358785964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGTGCTGTGTCTTTTAC	NA	False	NA	3	True	AATAAA	-16	NA	72117879	72165345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72163222
ES_00026390	chr17	+	217	2	Antisense	novelGene_ENSMUSG00000024067.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3328	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTTCTTAACCGCTGAG	NA	False	NA	NA	False	NA	NA	NA	74613347	74625713	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_+_74613465_74625613
ES_00026391	chr17	+	2060	13	NIC	ENSMUSG00000024069.15	novel	2148	14	NA	NA	1	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	51.7040187563361	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTCCCATTTACAAT	NA	False	NA	NA	False	AATAAA	-16	NA	74702640	74731209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_74702664_74708906_74708994_74710998_74711084_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ES_00026392	chr17	+	15568	73	NIC	ENSMUSG00000024073.17	novel	14610	73	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	2	10	junction_12	10.2327843983546	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTCTTGTTTCTAAAAT	NA	False	NA	14	True	AATAAA	-20	NA	74835516	75010348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159_74887558_74892947_74893098_74896589_74896816_74900083_74900245_74901316_74901449_74901864_74901997_74903851_74904034_74905033_74905168_74905977_74906140_74906231_74906364_74906864_74906963_74909959_74910108_74911488_74911623_74912983_74913119_74915091_74915280_74916053_74916384_74916631_74916732_74917989_74918205_74918342_74918552_74918993_74919341_74920371_74920592_74921293_74921428_74922214_74922326_74925430_74925559_74926701_74926834_74929030_74929247_74929903_74930088_74930745_74930902_74932100_74932235_74933956_74934111_74936399_74936517_74937954_74938110_74938605_74938733_74941790_74941902_74942757_74942892_74945337_74945466_74946774_74947338_74948627_74948804_74949255_74949353_74949486_74949682_74950289_74950491_74953463_74953744_74954198_74954456_74954711_74954821_74955112_74955335_74956617_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ES_00026393	chr17	+	4744	30	FSM	ENSMUSG00000001870.17	ENSMUST00000112514.2	4870	30	126	0	126	0	multi-exon	FALSE	canonical	2	10	junction_17	5.33313515287757	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTGAGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	75486031	75698321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_+_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583549_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ES_00026403	chr17	+	5094	22	NIC	ENSMUSG00000032624.17	novel	5441	24	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	112.735940543597	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTTTGTTTGGT	NA	False	NA	19	True	GATAAA	-22	NA	83658410	83787793	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ES_00026404	chr17	+	5154	21	NIC	ENSMUSG00000032624.17	novel	5286	24	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	116.303256618205	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCCTTTGCCTTTGTTT	NA	False	NA	16	True	GATAAA	-19	NA	83658417	83787790	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ES_00026412	chr17	+	1294	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-2	5	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCCCTCCCATTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	95057537	95082565	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
ES_00026413	chr17	+	404	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	9	19018	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	79.7413788443616	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057574	95101578	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95093195_95093277_95101454
ES_00026418	chr17	-	1304	5	NNC	ENSMUSG00000116995.2	novel	1210	4	NA	NA	7	9	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1.11803398874989	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGGCACCATCCGGCC	NA	False	NA	NA	False	TTTAAA	-7	NA	3165063	3162055	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_3162848_3162936_3163029_3163562_3163623_3164462_3164621_3164861
ES_00026419	chr17	-	754	6	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-30	9649	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2942.06897267892	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGGTGGCACACGCCT	NA	False	NA	NA	False	NA	NA	NA	6367723	6346965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6347001_6360818_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ES_00026420	chr17	-	899	6	Fusion	ENSMUSG00000092074.3_ENSMUSG00000118494.2	novel	3321	5	NA	NA	69	9649	multi-exon	FALSE	non_canonical	0	0	junction_1	3402.14970864011	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGGTGGCACACGCCT	NA	False	NA	NA	False	NA	NA	NA	6371942	6346965	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_6347003_6360818_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6371724
ES_00026422	chr17	-	4713	2	ISM	ENSMUSG00000116812.2	ENSMUST00000231574.2	3159	6	19816	-4285	19816	4285	3prime_fragment	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATTACATGTGTGCCA	NA	False	NA	NA	False	AATAAA	-19	NA	6392307	6385593	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_6389993_6391993
ES_00026425	chr17	-	277	3	Intergenic	novelGene_1674	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	48	junction_1	1	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGCTGAGACCACTGAGG	4512	False	NA	NA	False	NA	NA	NA	6651323	6646766	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6646892_6649596_6649676_6651250
ES_00026426	chr17	-	3677	11	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	279	8992	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.869427883173	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGAGCTGTCATGGTAA	NA	False	NA	NA	False	NA	NA	NA	6716865	6696930	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6696958_6705932_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836
ES_00026428	chr17	-	4423	18	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10128	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	314.033178772948	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	2340	False	NA	0	True	AATAAA	-21	NA	6744549	6705924	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6716919_6717857_6717874_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ES_00026429	chr17	-	4418	17	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10128	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	295.649067466397	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	2340	False	NA	0	True	AATAAA	-21	NA	6744549	6705924	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6716930_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ES_00026431	chr17	-	7127	3	ISM	ENSMUSG00000116560.2	ENSMUST00000231996.2	3159	6	10025	-4353	10025	4353	3prime_fragment	FALSE	canonical	3	12	junction_2	10	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTACATGTGTGCCAAG	NA	False	NA	NA	False	AATAAA	-21	NA	6786087	6774836	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_6779304_6781304_6783818_6785940
ES_00026432	chr17	-	267	2	Intergenic	novelGene_1681	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGATACGCGCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	6861843	6850324	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6850527_6861778
ES_00026433	chr17	-	2191	1	Intergenic	novelGene_1682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGACCGAAATCTGAT	NA	False	NA	15	True	AATAAA	-36	NA	6879677	6877486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_6877500_6879700
ES_00026434	chr17	-	950	6	NNC	ENSMUSG00000093880.4	novel	1386	16	NA	NA	21971	1099	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	289.011003250741	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCATTTTTAATAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	6885218	6880052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_6880426_6881151_6881219_6881459_6881550_6882632_6882716_6884475_6884528_6884933
ES_00026437	chr17	-	238	3	ISM	ENSMUSG00000093880.4	ENSMUST00000115772.6	1386	16	10	16613	10	-16613	5prime_fragment	FALSE	canonical	3	466	junction_2	90	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTGGGGTGGCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	6907179	6897764	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_6897853_6899827_6899884_6907085
ES_00026438	chr17	-	370	2	Genic_Genomic	ENSMUSG00000076218.3	novel	109	1	NA	NA	-58	49969	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAAATGAAAAGGGAGATA	7028	False	NA	NA	False	NA	NA	NA	7162794	7112658	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_7112690_7162455
ES_00026439	chr17	-	369	2	Genic_Genomic	ENSMUSG00000076218.3	novel	109	1	NA	NA	-58	49969	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAAATGAAAAGGGAGATA	7028	False	NA	NA	False	NA	NA	NA	7162794	7112658	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_7112689_7162455
ES_00026440	chr17	-	989	5	ISM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	36932	17	36857	-17	3prime_fragment	FALSE	canonical	2	7	junction_1	26.4102252924885	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTTCATTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	7178823	7172131	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676
ES_00026442	chr17	-	5238	26	NIC	ENSMUSG00000014426.10	novel	5441	27	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_25	52.5607305885297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGCGTCTGTTACTGGCT	NA	False	NA	1	True	AATAAA	-23	NA	12537671	12446507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12461536_12461693_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12537384
ES_00026443	chr17	-	2131	10	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	0	34684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	335.722475039896	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGTGTCCTAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	13179634	13127092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_13127126_13161928_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ES_00026444	chr17	-	1087	2	FSM	ENSMUSG00000117147.2	ENSMUST00000233183.2	1624	2	0	537	0	-537	multi-exon	FALSE	canonical	2	3	junction_1	0	549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCCATGATGTTAT	NA	False	NA	NA	False	NA	NA	NA	13317359	13316102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_13317114_13317283
ES_00026445	chr17	-	360	1	NIC	ENSMUSG00000117042.2	novel	796	3	NA	NA	17217	-207	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTTTATTAGAACAAAAAT	NA	False	NA	NA	False	NA	NA	NA	13703381	13703021	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_13703000_13703400
ES_00026446	chr17	-	305	2	FSM	ENSMUSG00000046991.13	ENSMUST00000228869.2	1800	2	28	1467	-6	1	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCTCAGTTCAGTTGC	NA	False	NA	NA	False	NA	NA	NA	15163392	15159571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15159843_15163358
ES_00026447	chr17	-	579	4	FSM	ENSMUSG00000014771.14	ENSMUST00000137233.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	378.76319192281	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACTTCATTGTGTTCTC	NA	False	NA	NA	False	TTTAAA	-40	NA	15747248	15743052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_15743169_15745530_15745663_15746634_15746875_15747157
ES_00026448	chr17	-	2885	11	FSM	ENSMUSG00000023845.8	ENSMUST00000232462.2	2864	11	0	-21	0	21	multi-exon	FALSE	canonical	3	25	junction_1	4.50444225182208	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGTGAGAATCAGCAAT	NA	False	NA	NA	False	AATACA	-41	NA	17844751	17772358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_17773221_17773423_17773585_17783014_17783147_17786944_17787077_17788582_17788697_17791135_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
ES_00026449	chr17	-	467	1	ISM	ENSMUSG00000091259.3	ENSMUST00000169559.3	8810	6	25017	3180	25017	-3180	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCCCAGGCATGAGCTG	NA	False	NA	NA	False	NA	NA	NA	20791668	20791201	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_20791200_20791700
ES_00026450	chr17	-	3207	6	NNC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	1205	11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	18.9799894625893	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGTGCTCAATTTCC	NA	False	NA	-1	True	NA	NA	NA	22063535	22035854	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22037690_22038194_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22063404
ES_00026451	chr17	-	301	4	NIC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	58	-2253	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	20.6774165590278	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGTGAATATCCAAGTGAA	NA	False	NA	NA	False	AATATA	-42	NA	22064682	22039101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_22039170_22040050_22040178_22042824_22042873_22064624
ES_00026452	chr17	-	604	4	ISM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	212	2268	-75	-2268	5prime_fragment	FALSE	canonical	2	13	junction_3	1.24721912892465	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTCATTGCTTTTCCT	NA	False	NA	NA	False	AATAAA	-23	NA	22128695	22100818	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_22101066_22106291_22106340_22127029_22127178_22128534
ES_00026453	chr17	-	1880	1	FSM	ENSMUSG00000117252.2	ENSMUST00000233487.2	1345	1	-7	-528	-7	528	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTCACCAAAATTTTG	NA	False	NA	NA	False	NA	NA	NA	22405096	22403216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22403200_22405100
ES_00026454	chr17	-	853	1	FSM	ENSMUSG00000117164.2	ENSMUST00000232725.2	1139	1	334	-48	334	48	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAGAAAGCCTACAAAAG	NA	False	NA	NA	False	NA	NA	NA	22551641	22550788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_22550800_22551600
ES_00026455	chr17	-	378	2	Intergenic	novelGene_1718	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	3	junction_1	0	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTCATTGTTTCAACA	NA	False	NA	-26	True	NA	NA	NA	22995162	22991599	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_22991955_22995139
ES_00026456	chr17	-	2744	7	NNC	ENSMUSG00000117333.2	novel	1533	2	NA	NA	-9962	584	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	4.02768199119819	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTTATCTCAAATGAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	23036672	22995606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_22997582_22998380_22998508_22998733_22998945_23001024_23001092_23004787_23004923_23035266_23035358_23036534
ES_00026457	chr17	-	749	6	FSM	ENSMUSG00000002617.15	ENSMUST00000135840.2	759	6	10	0	10	0	multi-exon	FALSE	canonical	1	1	junction_4	4.4988887516808	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAAGTCTTACAAATA	NA	False	NA	NA	False	NA	NA	NA	23412215	23396258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410483_23410650_23410777_23412048
ES_00026458	chr17	-	1044	7	FSM	ENSMUSG00000024114.16	ENSMUST00000024926.14	1128	7	0	84	0	-84	multi-exon	FALSE	canonical	1	1	junction_2	10.7651701746368	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCCATATACTGTAGGG	NA	False	NA	NA	False	NA	NA	NA	24063146	24055842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24056123_24056464_24056623_24061218_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
ES_00026459	chr17	-	260	1	FSM	ENSMUSG00000077184.4	ENSMUST00000103996.4	129	1	3	-134	3	134	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTGGCAGAGAAATGGA	9090	False	NA	NA	False	NA	NA	NA	24242299	24242039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24242000_24242300
ES_00026460	chr17	-	1214	4	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	0	34387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1264.20963451478	910	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGCCAAGCATGGTGATA	NA	False	NA	NA	False	NA	NA	NA	24388435	24348452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24348484_24382839_24383583_24383672_24383857_24388179
ES_00026462	chr17	-	2231	13	FSM	ENSMUSG00000024137.10	ENSMUST00000228882.2	2226	13	0	-5	0	1	multi-exon	FALSE	canonical	3	30	junction_9	27.3844795864779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGATTGGGTAGAG	237	False	NA	1	True	AATAAA	-18	NA	24670453	24662750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379
ES_00026463	chr17	-	2534	15	NNC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	31.8523378823506	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGATTGGGTAGAG	NA	False	NA	1	True	AATAAA	-18	NA	24674260	24662750	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24662820_24662839_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ES_00026467	chr17	-	877	4	FSM	ENSMUSG00000002504.16	ENSMUST00000235042.2	874	4	0	-3	0	3	multi-exon	FALSE	canonical	3	54	junction_2	10.6562449087639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTATACCTCTACTACT	5475	False	NA	NA	False	NA	NA	NA	24868967	24860658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24860727_24860792_24861345_24866500_24866702_24868911
ES_00026468	chr17	-	671	5	NNC	ENSMUSG00000040048.15	novel	732	4	NA	NA	0	30543	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	950.087495970766	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATTTTGTCCCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	24943368	24910490	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_24910518_24941037_24941195_24941354_24941495_24941628_24941768_24943160
ES_00026469	chr17	-	1130	4	NIC	ENSMUSG00000040888.11	novel	1162	4	NA	NA	3	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	273.584843634779	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTGGTTTCTGTGTGCTT	NA	False	NA	-9	True	AATAAA	-15	NA	24915061	24912162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_24912587_24913164_24913417_24914227_24914425_24914804
ES_00026470	chr17	-	798	3	FSM	ENSMUSG00000040888.11	ENSMUST00000046839.10	1776	3	0	978	0	17	multi-exon	FALSE	canonical	3	527	junction_2	47.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTCAAGAGTTTAGCGTA	NA	False	NA	23	True	ATTAAA	-44	NA	24915130	24913141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_24913417_24914227_24914425_24914804
ES_00026472	chr17	-	5320	34	NNC	ENSMUSG00000024163.18	novel	5418	33	NA	NA	0	219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	21.0607586652418	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTCCCTTGGTCCCTA	NA	False	NA	NA	False	NA	NA	NA	25155919	25117362	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25128123_25128136_25131721_25131841_25132503_25132607_25133432_25133680_25135477_25135603_25135941_25136560_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ES_00026473	chr17	-	751	5	FSM	ENSMUSG00000024163.18	ENSMUST00000125648.2	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	9.02773504263389	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAACAAGGTGCATGTTA	8651	False	NA	NA	False	NA	NA	NA	25120692	25119517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313
ES_00026476	chr17	-	2008	16	NIC	ENSMUSG00000063011.8	novel	2165	16	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_15	17.5494222760244	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTGAGATGTCCTGTAG	6942	False	NA	-10	True	AATAAA	-14	NA	25973001	25967594	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25972904
ES_00026478	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4359	False	NA	-35	True	AATAAA	-14	NA	26004541	26001796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
ES_00026479	chr17	-	824	4	NIC	ENSMUSG00000057411.10	novel	1321	5	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	73.8421740380568	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8408	False	NA	-7	True	AATAAA	-17	NA	26011331	26009479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_26009753_26010319_26010461_26010545_26010651_26011026
ES_00026480	chr17	-	634	5	FSM	ENSMUSG00000025733.18	ENSMUST00000176583.8	634	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	4.96865172858795	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGAAGGTGAGGCAGAC	7395	False	NA	NA	False	NA	NA	NA	26062117	26060541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26060642_26060730_26061066_26061153_26061263_26061339_26061393_26062080
ES_00026481	chr17	-	5260	29	ISM	ENSMUSG00000073434.13	ENSMUST00000177170.8	5946	40	4545	0	-1544	0	3prime_fragment	TRUE	canonical	3	31	junction_22	14.0583695748135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTTTATTGTCCCAT	6276	False	NA	NA	False	AATAAA	-23	NA	26075812	26063744	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732
ES_00026484	chr17	-	4487	11	NNC	ENSMUSG00000037326.11	novel	4922	10	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_4	30.5844731849349	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCATTCTGTTGTCACC	1841	False	NA	-6	True	AATAAA	-21	NA	26204651	26177337	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_26178708_26178780_26178960_26179365_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ES_00026486	chr17	-	795	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236967.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	27	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26313142	26310707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_26311127_26312590_26312935_26313110
ES_00026487	chr17	-	2857	13	NNC	ENSMUSG00000024187.16	novel	2833	13	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_12	61.2392847770122	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTCTGTCTGGATG	1931	False	NA	-6	True	AATAAA	-42	NA	26463185	26431672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26445014_26462963
ES_00026488	chr17	-	2737	13	NIC	ENSMUSG00000024187.16	novel	2833	13	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	64.7081052797012	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	2006	False	NA	-17	True	AATAAA	-31	NA	26463110	26431683	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_26432692_26432777_26432881_26433319_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
ES_00026490	chr17	-	642	5	NIC	ENSMUSG00000024194.17	novel	719	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	388.018685117096	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9387	False	NA	-17	True	AATAAA	-18	NA	27158408	27156945	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_27157151_27157391_27157442_27157700_27157761_27157857_27158067_27158290
ES_00026492	chr17	-	2389	6	Fusion	ENSMUSG00000024213.15_ENSMUSG00000116657.2	novel	2223	5	NA	NA	0	-4650	intron_retention	FALSE	non_canonical	0	0	junction_1	138.057379375389	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGCCACCTATTGAATTC	NA	False	NA	NA	False	NA	NA	NA	27842469	27769330	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_27769502_27798360_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
ES_00026493	chr17	-	677	4	FSM	ENSMUSG00000062753.15	ENSMUST00000080190.9	677	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	115.750689942748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_27782991_27783122_27783314_27783535_27783725_27784633
ES_00026494	chr17	-	2086	6	NIC	ENSMUSG00000024218.14	novel	3457	6	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_5	59.2702286143727	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGGGTTTCTCTGTGTTG	NA	False	NA	-7	True	AATAAA	-21	NA	28128088	28120099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127743
ES_00026495	chr17	-	1900	4	NNC	ENSMUSG00000117120.2	novel	496	3	NA	NA	-275	1313	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	16.2138486760204	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	ATTAAA	-19	NA	28299544	28294078	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28295471_28296959_28297033_28298895_28299280_28299493
ES_00026496	chr17	-	504	1	FSM	ENSMUSG00000117028.2	ENSMUST00000232711.2	1064	1	637	-77	637	77	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACCCAACACCTGTTTC	9527	False	NA	NA	False	NA	NA	NA	28442504	28442000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28442000_28442500
ES_00026497	chr17	-	237	2	Intergenic	novelGene_1741	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAACAACAACAAAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	28610007	28497949	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_28497979_28609799
ES_00026498	chr17	-	2586	12	NIC	ENSMUSG00000002249.22	novel	2585	13	NA	NA	-8	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	2.83717936987768	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAACAGGTGTTGACAC	NA	False	NA	NA	False	NA	NA	NA	28569767	28550650	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28555484_28555548_28559127_28559193_28560322_28560575_28569582
ES_00026499	chr17	-	720	2	FSM	ENSMUSG00000037446.15	ENSMUST00000142143.3	1962	2	370	872	-264	-348	multi-exon	FALSE	canonical	3	5	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGGCTGTTCTGAAAC	NA	False	NA	NA	False	NA	NA	NA	28575412	28572383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28572829_28575137
ES_00026500	chr17	-	2881	7	NNC	ENSMUSG00000024222.18	novel	3543	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	204.007080487146	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCATGGCTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28637479	28618067	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637414
ES_00026501	chr17	-	1550	1	FSM	ENSMUSG00000117313.2	ENSMUST00000233201.2	1708	1	-124	282	-124	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCCAACTGTAATCTCCA	NA	False	NA	NA	False	NA	NA	NA	28645528	28643978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28644000_28645500
ES_00026502	chr17	-	224	2	FSM	ENSMUSG00000024222.18	ENSMUST00000147716.2	2247	2	0	2023	0	-2023	multi-exon	FALSE	canonical	2	8	junction_1	0	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTACCCTGTAGGTGC	NA	False	NA	NA	False	NA	NA	NA	28726380	28718339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_28718393_28726209
ES_00026503	chr17	-	1671	1	FSM	ENSMUSG00000117255.2	ENSMUST00000233925.2	2130	1	50	409	50	-409	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTGTTCAGCATCCTAA	NA	False	NA	NA	False	AATAAA	-45	NA	29020547	29018876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29018900_29020500
ES_00026504	chr17	-	2778	2	ISM	ENSMUSG00000048905.6	ENSMUST00000062357.6	4597	12	15576	20	5952	-20	3prime_fragment	FALSE	canonical	3	14	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGACACTGACTCAAA	NA	False	NA	-24	True	NA	NA	NA	29118722	29115385	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_29117898_29118456
ES_00026506	chr17	-	2541	8	ISM	ENSMUSG00000024006.18	ENSMUST00000232836.2	2778	13	18506	-830	1	-8	3prime_fragment	FALSE	canonical	3	678	junction_3	46.4296703166659	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCGAACTGTGGTGGATT	NA	False	NA	-6	True	AATAAA	-13	NA	29201159	29189861	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005
ES_00026507	chr17	-	1455	13	ISM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	99	2165	0	0	5prime_fragment	FALSE	canonical	3	678	junction_2	54.8107856377029	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATCCCACTGGCTGCCAC	NA	False	NA	NA	False	NA	NA	NA	29226870	29192018	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
ES_00026508	chr17	-	627	4	FSM	ENSMUSG00000024006.18	ENSMUST00000232723.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_1	11.2644968324772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACATGTTCACTTCTCTT	NA	False	NA	NA	False	AATATA	-15	NA	29226886	29210154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29210395_29211390_29211443_29218982_29219116_29226684
ES_00026509	chr17	-	3032	2	FSM	ENSMUSG00000085912.3	ENSMUST00000133221.3	3218	2	186	0	186	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCAAGCCACCCTCGAC	NA	False	NA	NA	False	CATAAA	-1	NA	29297967	29276403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29279333_29297864
ES_00026510	chr17	-	457	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	-63	-61	-63	61	mono-exon	FALSE	NA	NA	NA	NA	NA	1023	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAAAAAGACAA	NA	False	NA	NA	False	NA	NA	NA	29356341	29355884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_29355900_29356300
ES_00026515	chr17	-	418	2	NNC	ENSMUSG00000097125.3	novel	417	2	NA	NA	15952	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGAGACCCATCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	29667177	29665892	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_29666108_29666974
ES_00026516	chr17	-	2079	12	FSM	ENSMUSG00000062202.15	ENSMUST00000237037.2	2079	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	32.1250140688782	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	30795423	30439072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_30439119_30439483_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ES_00026517	chr17	-	219	1	Intergenic	novelGene_1753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGTATTAAGCCACAGA	NA	False	NA	NA	False	NA	NA	NA	30753045	30752826	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_30752800_30753000
ES_00026518	chr17	-	1486	5	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-866	3	at_least_one_novel_splicesite	FALSE	canonical	3	145	junction_3	110.320838919943	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTCCTCTGAGATGACA	NA	False	NA	2	True	AATAAA	-28	NA	30846745	30841411	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755_30846170_30846397
ES_00026519	chr17	-	666	1	FSM	ENSMUSG00000118119.2	ENSMUST00000235890.2	1293	1	1292	-665	1292	665	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TACAATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31092966	31092300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31092300_31093000
ES_00026520	chr17	-	1924	1	FSM	ENSMUSG00000118119.2	ENSMUST00000235890.2	1293	1	-726	95	-726	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCACAGAGATGGACAGG	NA	False	NA	NA	False	NA	NA	NA	31094984	31093060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31093100_31095000
ES_00026522	chr17	-	259	1	FSM	ENSMUSG00000118081.2	ENSMUST00000236844.2	324	1	109	-44	109	44	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGACCGGGTACCATCT	9725	False	NA	NA	False	NA	NA	NA	31680700	31680441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31680400_31680700
ES_00026523	chr17	-	3634	11	FSM	ENSMUSG00000024037.14	ENSMUST00000172284.9	3633	11	0	-1	0	0	multi-exon	FALSE	canonical	3	14	junction_8	141.425033144772	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGTTGTCTCTGTGTCTT	NA	False	NA	0	True	ATTAAA	-23	NA	31731257	31713295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728794_31728887_31729551_31729621_31731140
ES_00026524	chr17	-	448	1	FSM	ENSMUSG00000104159.2	ENSMUST00000193280.2	3170	1	2688	34	2688	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGCGCCGGAAAATAAACC	NA	False	NA	NA	False	NA	NA	NA	31751746	31751298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31751300_31751700
ES_00026525	chr17	-	276	1	FSM	ENSMUSG00000118071.2	ENSMUST00000235397.2	2911	1	2229	406	2229	-406	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCGAAAAAACAAAAAACAAA	8208	False	NA	NA	False	NA	NA	NA	31782437	31782161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_31782200_31782400
ES_00026526	chr17	-	1033	9	Fusion	ENSMUSG00000061613.14_ENSMUSG00000118071.2	novel	1046	8	NA	NA	0	-1167	multi-exon	FALSE	non_canonical	0	0	junction_1	2066.5670053255	299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAATTTGCCTGGCTTGTC	NA	False	NA	NA	False	AGTAAA	-20	NA	31877677	31782922	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_31783099_31866054_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ES_00026527	chr17	-	975	2	Genic_Genomic	ENSMUSG00000118161.2	novel	882	1	NA	NA	0	5306	multi-exon	FALSE	non_canonical	0	0	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAGAAACTTCTCAGA	7279	False	NA	NA	False	NA	NA	NA	31863753	31857565	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_31857605_31862817
ES_00026528	chr17	-	974	2	Genic_Genomic	ENSMUSG00000118161.2	novel	882	1	NA	NA	0	5306	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAGAAACTTCTCAGA	7279	False	NA	NA	False	NA	NA	NA	31863753	31857565	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_31857604_31862817
ES_00026531	chr17	-	2751	7	NNC	ENSMUSG00000002076.13	novel	2867	8	NA	NA	0	162	at_least_one_novel_splicesite	FALSE	non_canonical	3	53	junction_1	552.415202140162	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGAAGAGCCATCCTGT	NA	False	NA	NA	False	NA	NA	NA	32253482	32163580	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32164934_32164957_32165786_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ES_00026532	chr17	-	5680	20	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_19	65.4612866922249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTGTCTCCCTGAAAT	NA	False	NA	-4	True	AATAAA	-19	NA	32503100	32415247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
ES_00026533	chr17	-	5924	21	NIC	ENSMUSG00000024002.19	novel	5957	20	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_16	76.686292777784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTGTCTCCCTGAAAT	NA	False	NA	-4	True	AATAAA	-19	NA	32503636	32415247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443057_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
ES_00026540	chr17	-	692	3	FSM	ENSMUSG00000024050.19	ENSMUST00000172216.8	1485	3	0	793	0	247	multi-exon	FALSE	canonical	2	4	junction_2	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGGGAGGGGACAGGTC	NA	False	NA	NA	False	NA	NA	NA	32607700	32586797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32587122_32606546_32606792_32607577
ES_00026541	chr17	-	309	2	NNC	ENSMUSG00000024050.19	novel	2781	4	NA	NA	-7057	-118	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATCGGGCTAGCCAACCA	NA	False	NA	NA	False	NA	NA	NA	32595483	32588396	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_32588504_32595281
ES_00026542	chr17	-	251	2	FSM	ENSMUSG00000052142.16	ENSMUST00000134723.2	354	2	103	0	103	0	multi-exon	FALSE	canonical	2	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCGGCCAGTGCTGCGCA	NA	False	NA	NA	False	NA	NA	NA	32612597	32611612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_32611763_32612496
ES_00026543	chr17	-	567	2	Genic_Genomic	ENSMUSG00000117468.2	novel	816	1	NA	NA	56	-160	multi-exon	TRUE	canonical	0	0	junction_1	0	1111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAACGCTTCAAGGAAT	NA	False	NA	NA	False	NA	NA	NA	33071938	33071338	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr17_-_33071867_33071899
ES_00026544	chr17	-	898	4	FSM	ENSMUSG00000024295.10	ENSMUST00000234274.2	897	4	0	-1	0	1	multi-exon	FALSE	canonical	2	2	junction_1	2.86744175568088	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGATATTCATTGTTAC	NA	False	NA	NA	False	ATTAAA	-14	NA	33184686	33174969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33175278_33176508_33176849_33179548_33179752_33184639
ES_00026545	chr17	-	924	3	FSM	ENSMUSG00000055240.18	ENSMUST00000174512.4	6095	3	0	5171	0	-100	multi-exon	FALSE	canonical	3	44	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTAAGAACTTATTTTGG	NA	False	NA	NA	False	NA	NA	NA	33613597	33604780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_33605442_33605658_33605786_33613461
ES_00026546	chr17	-	2321	17	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	626.847466369411	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5788	False	NA	-8	True	AATAAA	-13	NA	33904345	33865212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888050_33888140_33888151_33889054_33889108_33896247_33896415_33904240
ES_00026547	chr17	-	287	4	NNC	ENSMUSG00000067288.14	novel	382	4	NA	NA	0	57994	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9015.43679844003	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGAAAATCAGACA	NA	False	NA	NA	False	NA	NA	NA	34043320	33980006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33980041_34042023_34042091_34042166_34042305_34043272
ES_00026548	chr17	-	346	5	NNC	ENSMUSG00000067288.14	novel	382	4	NA	NA	0	57994	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8192.0966485998	1749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGAAAATCAGACA	NA	False	NA	NA	False	NA	NA	NA	34043468	33980006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_33980039_34042023_34042091_34042166_34042305_34043272_34043321_34043407
ES_00026549	chr17	-	2118	6	FSM	ENSMUSG00000079553.12	ENSMUST00000174507.8	2118	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	177.650218125394	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATCACAGGCTGTGTGTT	9723	False	NA	NA	False	NA	NA	NA	34109605	34101575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34102853_34103562_34103961_34104141_34104193_34105549_34105650_34105737_34105876_34109451
ES_00026550	chr17	-	1499	6	NIC	ENSMUSG00000067203.9	novel	1052	6	NA	NA	15	25	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	9.338094023943	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTATGCTGTGTGTATC	3659	False	NA	NA	False	AATAAA	-30	NA	34197786	34193607	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_34194083_34194470_34194588_34194714_34194990_34196744_34197021_34197227_34197498_34197700
ES_00026551	chr17	-	1590	2	FSM	ENSMUSG00000061232.17	ENSMUST00000173602.2	1590	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTTCCAGAATCTGG	NA	False	NA	-26	True	AATAAA	-10	NA	34216729	34215012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34216132_34216258
ES_00026552	chr17	-	2069	3	ISM	ENSMUSG00000061728.6	ENSMUST00000023469.8	1763	9	10531	-1283	10531	1283	3prime_fragment	FALSE	canonical	3	5	junction_2	1.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATTCTCTTATTTGTAT	NA	False	NA	NA	False	NA	NA	NA	34756094	34750567	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_34752582_34752929_34752957_34756066
ES_00026553	chr17	-	1731	9	FSM	ENSMUSG00000015474.17	ENSMUST00000064953.15	1729	9	0	-2	0	1	multi-exon	FALSE	canonical	2	11	junction_8	20.0249843945008	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTGGCTTATTCCCAG	3988	False	NA	1	True	AATAAA	-18	NA	34846351	34835634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846220
ES_00026554	chr17	-	1096	7	Fusion	ENSMUSG00000061207.12_ENSMUSG00000092202.2	novel	768	4	NA	NA	4	284	multi-exon	FALSE	canonical	1	4	junction_1	31.5330514434194	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTCTTTCTGTGTCCTTT	5595	False	NA	NA	False	AATAAA	-14	NA	35055899	34963442	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_34963773_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ES_00026555	chr17	-	690	3	FSM	ENSMUSG00000015451.17	ENSMUST00000159539.3	759	3	69	0	-33	0	multi-exon	FALSE	canonical	0	0	junction_1	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAGTCACCCACAGACAC	NA	False	NA	NA	False	NA	NA	NA	35031164	35030294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35030386_35030479_35030661_35030746
ES_00026556	chr17	-	926	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	31.928670501604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5619	False	NA	-4	True	AATAAA	-16	NA	35055875	35042968	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_35043301_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ES_00026559	chr17	-	953	4	FSM	ENSMUSG00000036185.10	ENSMUST00000040151.9	935	4	0	-18	0	0	multi-exon	FALSE	canonical	3	19	junction_3	16.4181471413663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246992	35244934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35245434_35245669_35245763_35246419_35246561_35246772
ES_00026560	chr17	-	1044	10	NIC	ENSMUSG00000007035.16	novel	2678	25	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	5.39089309809254	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGACAGCTTATTTTAT	1783	False	NA	NA	False	NA	NA	NA	35265708	35258122	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_35258395_35260445_35260492_35262704_35262741_35263000_35263111_35263292_35263415_35264089_35264153_35264269_35264351_35264905_35265030_35265206_35265364_35265675
ES_00026561	chr17	-	630	3	FSM	ENSMUSG00000073413.10	ENSMUST00000007259.4	546	3	12	-96	12	96	multi-exon	FALSE	canonical	2	3	junction_2	9.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAATGTTCGTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	35293464	35290322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35290736_35293150_35293289_35293385
ES_00026562	chr17	-	451	2	FSM	ENSMUSG00000073413.10	ENSMUST00000173120.2	667	2	0	216	0	82	multi-exon	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGCGGGTTTCCCCTC	NA	False	NA	NA	False	NA	NA	NA	35297041	35293106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35293289_35296772
ES_00026564	chr17	-	1732	4	FSM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	32.9983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGCGTTGAATCTAAG	9372	False	NA	-8	True	AATAAA	-17	NA	35827682	35823633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_35824082_35825370_35825918_35826774_35827437_35827607
ES_00026565	chr17	-	2485	11	NNC	ENSMUSG00000003534.18	novel	3769	18	NA	NA	8967	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_10	9.22821759604746	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGGTGTATTTCCTGG	6743	False	NA	1	True	AATAAA	-35	NA	35999896	35992458	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_35999853
ES_00026566	chr17	-	3668	17	NIC	ENSMUSG00000003534.18	novel	3769	18	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_15	11.1186779789685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGGTGTATTTCCTGG	9037	False	NA	1	True	AATAAA	-35	NA	36011512	35992458	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
ES_00026567	chr17	-	440	2	FSM	ENSMUSG00000092600.2	ENSMUST00000174630.2	492	2	52	0	52	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTCTCTTCACCATTGA	9212	False	NA	NA	False	NA	NA	NA	36075031	36054214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36054515_36074891
ES_00026568	chr17	-	201	1	Intergenic	novelGene_1794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTATGTTTTAGAACAA	NA	False	NA	NA	False	NA	NA	NA	36097894	36097693	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_36097700_36097900
ES_00026569	chr17	-	762	3	FSM	ENSMUSG00000001525.11	ENSMUST00000134978.3	762	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4366.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGAGGCACTGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	36149100	36146792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36146932_36147054_36147466_36148888
ES_00026571	chr17	-	1350	12	NIC	ENSMUSG00000024426.18	novel	1452	13	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	38.0604130471848	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	False	NA	-15	True	AATAAA	-21	NA	36220925	36208503	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_36208808_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ES_00026572	chr17	-	2002	11	FSM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	0	32	0	3	multi-exon	FALSE	canonical	3	5	junction_1	41.2200194080498	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGACATTTTCAGCGAAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	36220937	36210740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ES_00026576	chr17	-	2239	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	3	1	intron_retention	FALSE	canonical	3	88	junction_4	22.0056810846654	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCTCTCATTTCTCTGT	NA	False	NA	0	True	AATAAA	-17	NA	36290568	36283431	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
ES_00026578	chr17	-	323	4	ISM	ENSMUSG00000073405.7	ENSMUST00000172538.2	1067	7	1649	10	1649	-10	3prime_fragment	FALSE	canonical	1	1	junction_1	14.613540144522	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTCAGAAGGCATGACAA	NA	False	NA	NA	False	NA	NA	NA	36420901	36420135	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_36420163_36420301_36420332_36420508_36420625_36420751
ES_00026579	chr17	-	307	5	Fusion	ENSMUSG00000073405.7_ENSMUSG00000079491.10	novel	1067	7	NA	NA	1827	-10	multi-exon	TRUE	canonical	1	1	junction_1	32.7137203631748	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTCAGAAGGCATGACAA	NA	False	NA	NA	False	NA	NA	NA	36430214	36420135	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_36420163_36420301_36420332_36420508_36420625_36420751_36420816_36430144
ES_00026580	chr17	-	687	3	NNC	ENSMUSG00000073403.12	novel	1698	6	NA	NA	540	-932	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	74	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTCTCTCTGTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	36456096	36453581	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_36453700_36454043_36454320_36455803
ES_00026581	chr17	-	908	1	NIC	ENSMUSG00000045409.17	novel	1465	5	NA	NA	5174	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGTGAGATTCATTGT	NA	False	NA	-9	True	ATTAAA	-11	NA	36574413	36573505	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_36573500_36574400
ES_00026582	chr17	-	2742	5	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	0	1852	multi-exon	FALSE	canonical	3	16	junction_4	59.1877309921575	81	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGATTGTGTCACAATG	NA	False	NA	7	True	NA	NA	NA	37292109	37278234	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37292031
ES_00026583	chr17	-	2042	5	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	106	1844	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	40.2080526760499	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGGTATTGATTGTG	NA	False	NA	-1	True	NA	NA	NA	37282182	37278242	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732
ES_00026585	chr17	-	2561	5	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	-7	282	intron_retention	FALSE	canonical	3	8	junction_4	96.6394717493841	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGTGAGACTGGAAAAAAA	NA	False	NA	-1	True	TTTAAA	-8	NA	37300403	37294670	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396_37299673_37299826
ES_00026587	chr17	-	2289	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	50	junction_12	700.728690881751	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906428	45896128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903450_45904257_45904359_45906407
ES_00026588	chr17	-	2137	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-259	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_13	654.668894134085	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45907142	45896128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45907005
ES_00026589	chr17	-	2094	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	18	-3	combination_of_known_splicesites	FALSE	canonical	2	40	junction_13	699.633708052855	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATAGCTCTGTGCATCCT	NA	False	NA	-7	True	AATAAA	-12	NA	45906811	45896131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906720
ES_00026590	chr17	-	1978	12	NIC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	-31	-3	combination_of_known_junctions	FALSE	canonical	2	106	junction_11	693.390150511562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATAGCTCTGTGCATCCT	NA	False	NA	-7	True	AATAAA	-12	NA	45910563	45896131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45910398
ES_00026592	chr17	-	809	2	FSM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	0	-5	0	5	multi-exon	FALSE	canonical	2	9	junction_1	0	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGGCTTTTGTTTTTG	NA	False	NA	0	True	AATAAA	-25	NA	45912993	45911891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_45912612_45912904
ES_00026594	chr17	-	550	2	FSM	ENSMUSG00000023951.19	ENSMUST00000143985.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCTTCGAGGAGCACT	NA	False	NA	NA	False	NA	NA	NA	46332298	46329637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46329806_46331916
ES_00026595	chr17	-	1493	2	FSM	ENSMUSG00000032842.14	ENSMUST00000165733.2	2283	2	0	790	0	-790	multi-exon	FALSE	canonical	3	48	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAACAGGCAGAGAAGGAG	7138	False	NA	NA	False	GGGGCT	-36	NA	46638923	46634573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46635841_46638697
ES_00026596	chr17	-	657	1	FSM	ENSMUSG00000091742.3	ENSMUST00000166852.3	520	1	-133	-4	-133	4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTCCAAAAAGCCAATA	1044	False	NA	NA	False	NA	NA	NA	46751156	46750499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_46750500_46751200
ES_00026597	chr17	-	2373	17	NNC	ENSMUSG00000003546.11	novel	2322	16	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	30.5511226266728	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	-5	True	AATAAA	-15	NA	46956938	46941552	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956900
ES_00026598	chr17	-	2604	17	NNC	ENSMUSG00000003546.11	novel	2322	16	NA	NA	259	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_16	32.0511675879366	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956689	46941556	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956416
ES_00026599	chr17	-	2155	8	NNC	ENSMUSG00000023971.10	novel	2274	7	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	190.22972149161	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGCCTTGCATCAGCCT	NA	False	NA	-5	True	NA	NA	NA	46985213	46977251	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_46978160_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983771_46985122
ES_00026600	chr17	-	858	3	FSM	ENSMUSG00000002769.10	ENSMUST00000147112.2	855	3	0	-3	0	3	multi-exon	FALSE	canonical	3	17	junction_2	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTGGTGTTTCTTCAG	5346	False	NA	NA	False	AGTAAA	-26	NA	47037727	47036586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47036898_47036986_47037338_47037531
ES_00026601	chr17	-	4263	7	NNC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-272	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	43.9523100138725	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47123383	47109045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123334
ES_00026602	chr17	-	736	1	FSM	ENSMUSG00000062472.7	ENSMUST00000075152.7	453	1	-136	-147	-136	147	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTAGACATCAATGAAACTA	NA	False	NA	NA	False	AATAAA	-44	NA	47354101	47353365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47353400_47354100
ES_00026604	chr17	-	724	4	FSM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	156	-7	156	7	multi-exon	FALSE	canonical	0	0	junction_3	32.6904675198546	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCAGCTTTTTTCTTTGGG	1992	False	NA	7	True	NA	NA	NA	47711353	47705475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_47705746_47706032_47706127_47706472_47706623_47711143
ES_00026606	chr17	-	3032	8	NNC	ENSMUSG00000023980.8	novel	2793	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	5	junction_1	69.953920693612	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_47801447_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ES_00026607	chr17	-	1532	4	ISM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	59	-6	-2	-2	3prime_fragment	FALSE	canonical	2	6	junction_1	0.942809041582063	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAGGACTCTTTACA	2151	False	NA	-4	True	AATAAA	-20	NA	48144157	48126254	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868
ES_00026608	chr17	-	361	2	FSM	ENSMUSG00000010592.10	ENSMUST00000233756.2	457	2	96	0	96	0	multi-exon	FALSE	canonical	3	591	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGATAAAAAAT	NA	False	NA	NA	False	AAGAAA	-15	NA	50590255	50588078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_50588340_50590155
ES_00026609	chr17	-	3840	1	FSM	ENSMUSG00000023927.16	ENSMUST00000146414.4	3840	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATCAGA	NA	False	NA	NA	False	AATACA	-39	NA	52117947	52114107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_52114100_52117900
ES_00026611	chr17	-	1068	6	ISM	ENSMUSG00000038781.8	ENSMUST00000233494.2	1597	12	5319	-5	-1774	0	3prime_fragment	FALSE	canonical	3	21	junction_5	4.54312667664022	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56307254	56304076	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56307016_56307086
ES_00026612	chr17	-	1079	6	FSM	ENSMUSG00000019578.12	ENSMUST00000146467.2	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_5	15.1393526942204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGCTCTGTTCTTTGGA	6486	False	NA	NA	False	NA	NA	NA	56381848	56377117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ES_00026613	chr17	-	1983	8	FSM	ENSMUSG00000011305.12	ENSMUST00000113072.3	1986	8	9	-6	9	0	multi-exon	FALSE	canonical	2	6	junction_1	3.35638289270592	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTTTTGGAACTTGGG	1400	False	NA	NA	False	AATAAA	-20	NA	56424289	56418600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082
ES_00026614	chr17	-	861	7	NNC	ENSMUSG00000019579.14	novel	1710	6	NA	NA	0	50646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.982098409358	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACGCAAAAGGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	56490849	56432097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56432123_56483546_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ES_00026615	chr17	-	2198	9	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	0	25638	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	208.024037072642	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATTACAGGTGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	56597511	56558837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_56558875_56585959_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ES_00026616	chr17	-	231	2	Intergenic	novelGene_1842	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTGGTAAAGGTGCTT	1243	False	NA	NA	False	NA	NA	NA	56608753	56608370	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_56608399_56608550
ES_00026617	chr17	-	229	3	Antisense	novelGene_ENSMUSG00000024201.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	19.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTGGTAAAGGTGCTT	NA	False	NA	NA	False	NA	NA	NA	56636151	56608370	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_56608399_56608550_56608701_56636100
ES_00026620	chr17	-	2676	19	NIC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	0	0	intron_retention	FALSE	canonical	3	24	junction_13	56.9141653915985	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891524	56869938	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
ES_00026621	chr17	-	4371	16	FSM	ENSMUSG00000041168.11	ENSMUST00000233732.2	4362	16	0	-9	0	9	multi-exon	FALSE	canonical	0	0	junction_15	205.931854963939	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTCTCAGTGTCGCCGT	1583	False	NA	-3	True	AATAAA	-26	NA	56933875	56921287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933365
ES_00026622	chr17	-	353	1	Intergenic	novelGene_1845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	8212	False	NA	NA	False	NA	NA	NA	57073504	57073151	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_57073200_57073500
ES_00026624	chr17	-	1751	14	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	0	44589	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.124841038755	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACCAAAAACAAAACCA	NA	False	NA	NA	False	AATGAA	-35	NA	57318288	57265815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_57265847_57310401_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ES_00026625	chr17	-	1750	14	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	0	44589	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.124841038755	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACCAAAAACAAAACCA	NA	False	NA	NA	False	AATGAA	-35	NA	57318288	57265815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_57265846_57310401_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ES_00026626	chr17	-	1940	2	ISM	ENSMUSG00000002668.9	ENSMUST00000011623.9	2521	24	10384	42	-234	-42	intron_retention	FALSE	canonical	3	34	junction_1	0	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTTCCCAACTCTCAATA	NA	False	NA	NA	False	NA	NA	NA	57375126	57373096	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_57373642_57373731
ES_00026627	chr17	-	635	1	FSM	ENSMUSG00000117298.2	ENSMUST00000232925.2	574	1	4	-65	4	65	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACTCACACACACACACA	NA	False	NA	NA	False	ATTAAA	-1	NA	59110617	59109982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_59110000_59110600
ES_00026628	chr17	-	511	1	FSM	ENSMUSG00000098123.2	ENSMUST00000182638.2	718	1	387	-180	387	180	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCCAAAAAACCTAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	62088240	62087729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_62087700_62088200
ES_00026629	chr17	-	212	2	NNC	ENSMUSG00000045036.16	novel	1165	5	NA	NA	41365	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGCACACATCTTTAT	2762	False	NA	NA	False	NA	NA	NA	65702025	65686159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_65686174_65701827
ES_00026630	chr17	-	8843	12	NIC	ENSMUSG00000034647.16	novel	10821	13	NA	NA	19	516	intron_retention	FALSE	canonical	3	23	junction_5	19.3732370565579	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAAGAGTGAAAGTGTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	66383958	66274491	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_66277333_66279291_66279388_66283015_66283160_66286496_66286596_66289830_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ES_00026631	chr17	-	927	9	FSM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	1803.30633403618	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5516	False	NA	-11	True	AATAAA	-15	NA	66408490	66386435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66407972_66408070_66408409
ES_00026632	chr17	-	289	1	Intergenic	novelGene_1854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAATAAAAAAA	8842	False	NA	NA	False	NA	NA	NA	66410856	66410567	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_66410600_66410900
ES_00026633	chr17	-	211	1	NIC	ENSMUSG00000117010.2	novel	228	2	NA	NA	168	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCCTTATGTCGCCATAT	NA	False	NA	NA	False	NA	NA	NA	66626339	66626128	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_66626100_66626300
ES_00026635	chr17	-	370	2	Antisense	novelGene_ENSMUSG00000117003.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	21	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGTGAAGTTTTAAAACG	NA	False	NA	NA	False	NA	NA	NA	66774588	66738913	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr17_-_66739029_66774333
ES_00026636	chr17	-	241	1	Intergenic	novelGene_1856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTAGGGTCTGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	66767057	66766816	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_-_66766800_66767100
ES_00026637	chr17	-	2040	7	NNC	ENSMUSG00000023460.14	novel	2010	6	NA	NA	0	12547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.6141085409257	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAGAAAAGAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	66826665	66788959	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66788990_66801506_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66813027_66813089_66826342
ES_00026638	chr17	-	2037	7	NNC	ENSMUSG00000023460.14	novel	2010	6	NA	NA	0	12547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.6141085409257	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAGAAAAGAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	66826665	66788959	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_66788992_66801511_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66813027_66813089_66826342
ES_00026640	chr17	-	884	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	18	2454	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	11.6484977572217	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCCACAGCCAATTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	69584185	69579902	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_69580339_69582162_69582295_69582786_69582902_69583120_69583191_69584054
ES_00026641	chr17	-	852	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	16	2446	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	9.09670269933013	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAAAACATCCCACAGCC	NA	False	NA	-9	True	ATTAAA	-9	NA	69584187	69579910	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_69580313_69582162_69582295_69582786_69582902_69583120_69583191_69584054
ES_00026643	chr17	-	1720	3	FSM	ENSMUSG00000047407.18	ENSMUST00000166395.9	1714	3	0	-6	0	0	multi-exon	FALSE	canonical	2	3	junction_2	438.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158729	71151199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71152268_71153166_71153394_71158304
ES_00026646	chr17	-	1084	3	ISM	ENSMUSG00000024053.12	ENSMUST00000233148.2	758	5	12585	-845	334	0	3prime_fragment	FALSE	canonical	2	7	junction_2	5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	71563007	71559166	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr17_-_71560089_71562113_71562243_71562974
ES_00026647	chr17	-	223	1	FSM	ENSMUSG00000103558.2	ENSMUST00000195774.2	1447	1	-26	1250	-26	-1250	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCCTTCTTGACGCCCC	NA	False	NA	NA	False	NA	NA	NA	71700305	71700082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_71700100_71700300
ES_00026648	chr17	-	1210	7	FSM	ENSMUSG00000058704.10	ENSMUST00000232989.2	1210	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	104.977378515564	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74601796	74507696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74562222_74562292_74565418_74565501_74601686
ES_00026652	chr17	-	8035	19	NNC	ENSMUSG00000024077.16	novel	8629	18	NA	NA	589	19	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.3363197596069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGTGACTTGGACTGTGT	NA	False	NA	9	True	AATAAA	-33	NA	79044036	78957322	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr17_-_78959612_78959635_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550_78974688_78977179_78977324_78980004_78980116_78984710_78984847_78990256_78990393_78991658_78991827_78995020_78995100_78999822_78999897_79008278_79008383_79043682
ES_00026653	chr17	-	5058	19	NIC	ENSMUSG00000024070.16	novel	5884	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_8	49.5907012888605	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAAACAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	79328206	79257977	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270006_79273603_79273881_79275468_79275547_79278788_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
ES_00026654	chr17	-	3922	4	FSM	ENSMUSG00000059811.14	ENSMUST00000221286.2	3922	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	166.182630460186	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAAGTTGTGATTCTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	80162031	80156491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80158223_80158315_80160386_80161262_80161335_80161982
ES_00026655	chr17	-	2742	14	FSM	ENSMUSG00000024095.16	ENSMUST00000184297.8	2742	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	238.271661377061	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGTTCATCTTCATT	3570	False	NA	NA	False	TATAAA	-15	NA	80369656	80337265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80352368_80352452_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
ES_00026658	chr17	-	3769	19	FSM	ENSMUSG00000024242.16	ENSMUST00000234585.2	3769	19	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_17	22.0011924480425	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	6358	False	NA	-4	True	AATAAA	-15	NA	80932415	80887945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484
ES_00026663	chr17	+	202	1	Intergenic	novelGene_1669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAATAGACTTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	6057131	6057333	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_6057100_6057300
ES_00026664	chr17	+	1249	1	Intergenic	novelGene_1691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAATTATTATACATTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	10538817	10540066	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_10538800_10540100
ES_00026665	chr17	+	206	1	Intergenic	novelGene_1692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTTTAAAGAGATAGAG	NA	False	NA	NA	False	NA	NA	NA	12068214	12068420	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_12068200_12068400
ES_00026667	chr17	+	415	1	Intergenic	novelGene_1716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGTCAGACCTGTACT	NA	False	NA	NA	False	NA	NA	NA	22235822	22236237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_22235800_22236200
ES_00026668	chr17	+	343	1	Intergenic	novelGene_1721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	453	False	NA	NA	False	NA	NA	NA	23812964	23813307	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_23813000_23813300
ES_00026669	chr17	+	201	1	Intergenic	novelGene_1725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTCCTCTACTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	24056648	24056849	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_24056600_24056800
ES_00026671	chr17	+	221	1	Intergenic	novelGene_1746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTCACCTGTGCCAAAT	NA	False	NA	NA	False	NA	NA	NA	29290380	29290601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29290400_29290600
ES_00026672	chr17	+	312	1	Intergenic	novelGene_1749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGGTGCTTGTTGTCAA	4080	False	NA	NA	False	NA	NA	NA	29685255	29685567	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_29685300_29685600
ES_00026673	chr17	+	224	1	Intergenic	novelGene_1754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAGGAGACACACCATTAA	175	False	NA	NA	False	NA	NA	NA	31104286	31104510	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_31104300_31104500
ES_00026675	chr17	+	206	1	Intergenic	novelGene_1756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTGTGTTCTTAAAGC	1528	False	NA	NA	False	NA	NA	NA	31914260	31914466	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_31914300_31914500
ES_00026676	chr17	+	245	1	Intergenic	novelGene_1760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAACCATCACTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	32410220	32410465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_32410200_32410500
ES_00026677	chr17	+	232	1	Intergenic	novelGene_1763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATCTCCCTGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	33056095	33056327	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_33056100_33056300
ES_00026678	chr17	+	203	1	Intergenic	novelGene_1765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAACCACATTAT	2370	False	NA	NA	False	AATAAA	-14	NA	33943629	33943832	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_33943600_33943800
ES_00026679	chr17	+	275	1	Intergenic	novelGene_1767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGTATGTTTCTTGACA	NA	False	NA	NA	False	NA	NA	NA	34110829	34111104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34110800_34111100
ES_00026680	chr17	+	287	1	Intergenic	novelGene_1768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGGAGCTGCAGCTAATA	1448	False	NA	NA	False	CATAAA	-36	NA	34327116	34327403	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34327100_34327400
ES_00026681	chr17	+	212	1	Intergenic	novelGene_1769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGTTGGGAGTTATCTT	2060	False	NA	NA	False	AAAAAG	-1	NA	34327728	34327940	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34327700_34327900
ES_00026682	chr17	+	202	1	Intergenic	novelGene_1772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TATAAAAAAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34779231	34779433	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_34779200_34779400
ES_00026683	chr17	+	288	1	Intergenic	novelGene_1774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCTGTCTTGAAAAAGCC	1661	False	NA	NA	False	NA	NA	NA	35143966	35144254	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35144000_35144300
ES_00026684	chr17	+	278	1	Intergenic	novelGene_1786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTCATGGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	35735568	35735846	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35735600_35735800
ES_00026685	chr17	+	214	1	Intergenic	novelGene_1791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCAGGGTTTCTATTCCT	7441	False	NA	NA	False	NA	NA	NA	35807158	35807372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_35807200_35807400
ES_00026686	chr17	+	231	1	Intergenic	novelGene_1797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAGACTCTGGGTGAAC	NA	False	NA	NA	False	AATGAA	-11	NA	36266213	36266444	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_36266200_36266400
ES_00026687	chr17	+	267	1	Intergenic	novelGene_1798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCAGTCATTCTTGG	NA	False	NA	NA	False	NA	NA	NA	36396779	36397046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_36396800_36397000
ES_00026690	chr17	+	200	1	Intergenic	novelGene_1805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGTCTTTTGACCCA	NA	False	NA	NA	False	NA	NA	NA	41057492	41057692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_41057500_41057700
ES_00026691	chr17	+	323	1	Intergenic	novelGene_1808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAAGAGAAAGGGGCTA	NA	False	NA	NA	False	NA	NA	NA	45925280	45925603	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_45925300_45925600
ES_00026692	chr17	+	204	1	Intergenic	novelGene_1810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCCACCTCTGCCCCTTC	NA	False	NA	NA	False	NA	NA	NA	45948207	45948411	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_45948200_45948400
ES_00026694	chr17	+	611	1	Intergenic	novelGene_1817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACCAAATAACCAAAC	NA	False	NA	NA	False	TTTAAA	-44	NA	47049151	47049762	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_47049200_47049800
ES_00026695	chr17	+	208	1	Intergenic	novelGene_1821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTTCTCTTGAAGTA	4480	False	NA	NA	False	NA	NA	NA	47211592	47211800	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_47211600_47211800
ES_00026696	chr17	+	205	1	Intergenic	novelGene_1826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	48282018	48282223	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_48282000_48282200
ES_00026697	chr17	+	1858	1	Intergenic	novelGene_1832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTTAAAATATTTGGTC	NA	False	NA	NA	False	NA	NA	NA	54210293	54212151	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_54210300_54212200
ES_00026699	chr17	+	204	1	Intergenic	novelGene_1840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAATTGAACAAAGCCAT	NA	False	NA	NA	False	NA	NA	NA	55909393	55909597	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_55909400_55909600
ES_00026700	chr17	+	272	1	Intergenic	novelGene_1851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTGGCAGCTTTGA	NA	False	NA	NA	False	AAGAAA	-19	NA	66197586	66197858	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_66197600_66197900
ES_00026702	chr17	+	202	1	Intergenic	novelGene_1861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTTTTCTTACATCTT	NA	False	NA	NA	False	NA	NA	NA	70135903	70136105	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr17_+_70135900_70136100
ES_00026708	chr18	+	3727	20	FSM	ENSMUSG00000024231.16	ENSMUST00000025073.12	3727	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_19	256.100893379987	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATACCAATTGTCAAGAAA	-35	True	NA	2	True	ATTAAA	-14	NA	3382987	3436374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3434843
ES_00026709	chr18	+	2845	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-25	True	NA	72	True	ATTAAA	-28	NA	3382997	3435385	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ES_00026710	chr18	+	3872	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	-47	3	-40	0	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATACCAATTGTCAAGAAA	162	False	NA	2	True	ATTAAA	-14	NA	3383184	3436374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ES_00026713	chr18	+	2729	1	FSM	ENSMUSG00000096528.2	ENSMUST00000179907.2	2686	1	34	-77	34	77	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTGGCCCCTACAGAAG	NA	False	NA	NA	False	NA	NA	NA	3471663	3474392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3471700_3474400
ES_00026714	chr18	+	2487	3	FSM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	0	2587	0	-2587	multi-exon	FALSE	canonical	3	117	junction_2	19.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCCACCTGTGTGGACT	-8	True	NA	NA	False	ACTAAA	-24	NA	3507922	3513817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3508286_3511256_3511545_3511981
ES_00026715	chr18	+	217	1	Intergenic	novelGene_1887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTCCAATGGTGAATCT	NA	False	NA	NA	False	NA	NA	NA	3840234	3840451	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_3840200_3840500
ES_00026716	chr18	+	2656	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234186.2	2110	9	-3	-543	-3	0	multi-exon	FALSE	canonical	3	50	junction_3	58.8005102018681	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGATAACAGTATTTC	-15	True	NA	15	True	AATAAA	-16	NA	4375588	4397328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ES_00026717	chr18	+	2633	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	-7	0	-3	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGATAACAGTATTTC	-15	True	NA	15	True	AATAAA	-16	NA	4375588	4397328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ES_00026718	chr18	+	2654	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	-3	0	-3	0	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGATAACAGTATTTCTA	-15	True	NA	17	True	AATAAA	-18	NA	4375588	4397330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ES_00026719	chr18	+	6774	4	FSM	ENSMUSG00000033960.7	ENSMUST00000037029.7	6782	4	8	0	8	0	multi-exon	TRUE	canonical	3	21	junction_2	13.6950923894494	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGTATTGTGTCTT	NA	False	NA	14	True	AATAAA	-19	NA	4634885	4682869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_4635032_4649074_4649406_4672514_4676168_4680225
ES_00026721	chr18	+	6863	35	NIC	ENSMUSG00000024236.19	novel	7907	38	NA	NA	-46	6	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	19.7669816616964	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGAATTCCAAGCCTGT	NA	False	NA	28	True	AATAAA	-34	NA	4920493	5119305	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_4920875_4971089_4971198_5037107_5037166_5040147_5040240_5046588_5046647_5046763_5046916_5048884_5049495_5058124_5058160_5058712_5058775_5059229_5059370_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ES_00026723	chr18	+	5777	8	FSM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	-6	30	-2	-30	multi-exon	FALSE	canonical	3	32	junction_5	9.45666809339164	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGTAATAAATGACTGCC	421	False	NA	NA	False	NA	NA	NA	5591857	5775437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_5591968_5705042_5705244_5748693_5748856_5758964_5759168_5761327_5761434_5766220_5768026_5770383_5770565_5772428
ES_00026724	chr18	+	2872	7	NNC	ENSMUSG00000024238.16	novel	5801	8	NA	NA	-6	2047	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	15.0406855635713	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAGAAAAGCAT	20	False	NA	NA	False	NA	NA	NA	5591905	5769789	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_5591968_5705042_5705244_5748693_5748856_5758964_5759168_5761327_5761434_5766220_5768026_5769456
ES_00026727	chr18	+	508	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	-42	-55	-42	55	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTTAAAAAATGAACATT	-9	True	NA	NA	False	ATTAAA	-31	NA	6332589	6333097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_6332600_6333100
ES_00026728	chr18	+	6531	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	-17	1	-17	-1	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCATTGATTTATTCAG	7	False	NA	NA	False	CATAAA	-22	NA	6765127	6794428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ES_00026729	chr18	+	674	1	FSM	ENSMUSG00000117556.2	ENSMUST00000234527.2	595	1	23	-102	23	102	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATCATTAGACAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	7549009	7549683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_7549000_7549700
ES_00026730	chr18	+	4406	14	FSM	ENSMUSG00000024283.16	ENSMUST00000074919.11	3070	14	-884	-452	-866	0	multi-exon	TRUE	canonical	3	146	junction_1	117.532571338518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTTGGCTTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	7867965	7927519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ES_00026732	chr18	+	5208	14	FSM	ENSMUSG00000024283.16	ENSMUST00000167020.8	5208	14	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_6	70.7547644077099	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGCAGTTATTTCAGAAT	12	True	NA	NA	False	AATAAA	-17	NA	7869196	7929028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ES_00026734	chr18	+	3346	13	FSM	ENSMUSG00000024283.16	ENSMUST00000092112.11	3094	13	-252	0	0	0	multi-exon	FALSE	canonical	3	106	junction_6	129.708862029118	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTTGGCTTTTTT	20	False	NA	NA	False	AATAAA	-22	NA	7869240	7927519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ES_00026738	chr18	+	982	1	FSM	ENSMUSG00000117428.2	ENSMUST00000235002.2	790	1	-78	-114	-78	114	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATCATGCTCTGTGTCTA	NA	False	NA	NA	False	ATTAAA	-40	NA	8051124	8052106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_8051100_8052100
ES_00026740	chr18	+	3294	1	FSM	ENSMUSG00000092097.3	ENSMUST00000171469.3	439	1	-242	-2613	-242	2613	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAAGCAAATGCTG	NA	False	NA	NA	False	NA	NA	NA	8693856	8697150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_8693900_8697200
ES_00026742	chr18	+	545	2	Intergenic	novelGene_1913	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAAGACTCCTGAATT	NA	False	NA	NA	False	NA	NA	NA	9592387	9598036	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9592459_9597562
ES_00026743	chr18	+	1535	2	Intergenic	novelGene_1914	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	67	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAAGACTCCTGAATT	NA	False	NA	NA	False	NA	NA	NA	9592387	9598036	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9592989_9597102
ES_00026744	chr18	+	4853	10	FSM	ENSMUSG00000036103.10	ENSMUST00000234965.2	8024	10	9	3162	3	1483	multi-exon	FALSE	canonical	3	13	junction_7	3.52066211505664	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGGGAAATCAAAGGTGT	9	False	NA	NA	False	NA	NA	NA	9707603	9879482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_9707760_9720920_9720972_9840238_9840362_9846786_9846886_9848103_9849151_9858545_9859035_9859837_9859975_9866743_9866854_9874788_9874935_9876987
ES_00026749	chr18	+	2095	14	FSM	ENSMUSG00000024287.9	ENSMUST00000234901.2	1875	14	-255	35	-255	0	multi-exon	FALSE	canonical	0	0	junction_10	213.882564692146	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGTTTTGGTAAACAATA	5359	False	NA	-21	True	ATTAAA	-45	NA	9963548	9993690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ES_00026752	chr18	+	474	1	FSM	ENSMUSG00000117552.2	ENSMUST00000234693.2	1079	1	275	330	275	-330	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATGCCATCCAATGGT	NA	False	NA	NA	False	NA	NA	NA	10262481	10262955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_10262500_10263000
ES_00026754	chr18	+	460	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	-21	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	-32	True	NA	2	True	NA	NA	NA	10617774	10627955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
ES_00026755	chr18	+	10253	21	FSM	ENSMUSG00000024294.15	ENSMUST00000052838.11	10231	21	-22	0	-22	0	multi-exon	FALSE	canonical	3	73	junction_1	10.1237344888139	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTATATTTTATCATTG	9	False	NA	NA	False	AATAAA	-18	NA	10725525	10818578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_10726534_10740982_10741155_10743268_10743399_10747355_10747461_10749322_10749390_10751822_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
ES_00026756	chr18	+	10196	22	NNC	ENSMUSG00000024294.15	novel	10231	21	NA	NA	-22	0	intron_retention	FALSE	non_canonical	2	25	junction_1	17.5479905627145	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTATATTTTATCATTG	9	False	NA	NA	False	AATAAA	-18	NA	10725525	10818578	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_10725780_10725836_10726534_10740982_10741155_10743268_10743399_10747355_10747461_10749322_10749390_10751822_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
ES_00026758	chr18	+	285	2	FSM	ENSMUSG00000005836.11	ENSMUST00000234971.2	616	2	13	318	13	-318	multi-exon	FALSE	canonical	2	2	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTTGCTCCTGTTTATC	12	False	NA	NA	False	NA	NA	NA	11059059	11063143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_11059219_11063017
ES_00026759	chr18	+	3230	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	-21	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3270	False	NA	9	True	ATTAAA	-31	NA	11790464	11875935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ES_00026761	chr18	+	3100	19	NIC	ENSMUSG00000041238.17	novel	781	8	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	44.3982051133146	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3681	False	NA	9	True	ATTAAA	-31	NA	11790875	11875935	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ES_00026762	chr18	+	3374	10	FSM	ENSMUSG00000040957.16	ENSMUST00000171109.9	3396	10	22	0	22	0	multi-exon	FALSE	canonical	3	22	junction_4	6.21428064627092	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGTGTGTGAACATG	NA	False	NA	NA	False	ATTAAA	-25	NA	11972298	12078683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_11973591_12015770_12015843_12021793_12021887_12038981_12039060_12056416_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
ES_00026763	chr18	+	3234	9	FSM	ENSMUSG00000040957.16	ENSMUST00000046948.10	3202	9	-32	0	22	0	multi-exon	FALSE	canonical	3	8	junction_3	10.1357967126418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTTGAAGAGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	11972298	12078621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_11973591_12015770_12015843_12021793_12021887_12056416_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
ES_00026764	chr18	+	3778	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	0	12	0	-12	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACCAATGCAAGGGTGA	5505	False	NA	NA	False	NA	NA	NA	12261797	12290432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ES_00026765	chr18	+	3817	1	FSM	ENSMUSG00000024404.8	ENSMUST00000235106.2	3817	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	12280304	12284121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12280300_12284100
ES_00026769	chr18	+	2057	20	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_18	66.8495644408247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGTAATAAAGTAC	NA	False	NA	NA	False	AATAAA	-15	NA	12301802	12323024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322270_12322443_12322862
ES_00026772	chr18	+	3776	5	FSM	ENSMUSG00000024410.16	ENSMUST00000139151.8	3776	5	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_2	14.8218588577816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12318487	12323031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ES_00026775	chr18	+	1561	1	FSM	ENSMUSG00000082051.2	ENSMUST00000119574.2	2377	1	36	780	36	-780	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTAGCTCGGACTTCTG	9631	False	NA	NA	False	NA	NA	NA	12420496	12422057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12420500_12422100
ES_00026777	chr18	+	6267	32	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19757	1360	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	16.1479888600645	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTTATGCACATTGGT	4959	False	NA	NA	False	AATATA	-11	NA	12657012	12717430	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ES_00026778	chr18	+	1973	14	FSM	ENSMUSG00000024424.16	ENSMUST00000169401.8	1950	14	-23	0	7	0	multi-exon	FALSE	canonical	1	3	junction_1	13.7926315977239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTGACCTTGCAGGA	NA	False	NA	2	True	AATAAA	-16	NA	12732959	12870107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
ES_00026779	chr18	+	4407	14	FSM	ENSMUSG00000024424.16	ENSMUST00000234966.2	4385	14	-22	0	-22	0	multi-exon	FALSE	canonical	3	26	junction_4	8.52563138615225	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGATGTGGATTGTGT	NA	False	NA	NA	False	ATTAAA	-25	NA	12776378	12871920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12777101_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
ES_00026788	chr18	+	1520	6	NIC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	33.7792835921664	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATAGAGTGTCTCCTTCA	NA	False	NA	9	True	NA	NA	NA	14839251	14895354	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_14839390_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ES_00026789	chr18	+	5134	15	FSM	ENSMUSG00000054321.8	ENSMUST00000234789.2	5134	15	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_13	8.14912039825809	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTTTTTGTTGTCAGT	NA	False	NA	NA	False	AATACA	-11	NA	14916301	15033416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_14916992_14929969_14930116_14932135_14932244_14937522_14937685_14937773_14937897_14940401_14940492_14946147_14946748_14954494_14954613_14955150_14955263_14963075_14963246_14968848_14968980_14974961_14975088_14977470_14977528_14992228_14992334_15031020
ES_00026803	chr18	+	3002	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134397	21161280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ES_00026804	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134964	21160592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ES_00026805	chr18	+	2851	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	-83	1	0	0	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134964	21161280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ES_00026807	chr18	+	2723	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-302	3	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGATCTTTCTCCCTCC	NA	False	NA	12	True	AATAAA	-24	NA	21194677	21233259	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
ES_00026808	chr18	+	4039	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	-14	1	-14	-1	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTCTGGACTTATTCTT	NA	False	NA	13	True	AATAAA	-17	NA	23937026	24026913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
ES_00026811	chr18	+	5863	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-58	-2	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	35.3647658929996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTGTGTGGATCTCTTT	NA	False	NA	20	True	GATAAA	-22	NA	24087690	24097728	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_24088241_24089395_24089911_24090111_24090254_24093072
ES_00026813	chr18	+	5649	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-18	-16	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24.0554914035583	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAATATGCAAACATTTT	NA	False	NA	6	True	GATAAA	-8	NA	24087730	24097714	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_24088081_24089395_24089911_24090111_24090254_24093072
ES_00026814	chr18	+	5541	4	FSM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	-71	2	-58	-2	multi-exon	FALSE	canonical	3	23	junction_1	32.0659043568433	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTGTGTGGATCTCTTT	NA	False	NA	20	True	GATAAA	-22	NA	24087690	24097728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24087919_24089395_24089911_24090111_24090254_24093072
ES_00026818	chr18	+	4108	13	FSM	ENSMUSG00000000420.16	ENSMUST00000170243.8	4108	13	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	61.8270437052697	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATGATACTCTGAG	NA	False	NA	8	True	ATTAAA	-19	NA	24338823	24419867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24339138_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
ES_00026820	chr18	+	4187	13	NIC	ENSMUSG00000000420.16	novel	4108	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	149.779907976115	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATGATACTCTGAG	NA	False	NA	8	True	ATTAAA	-19	NA	24339015	24419867	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_24339409_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
ES_00026822	chr18	+	1055	4	NIC	ENSMUSG00000024273.9	novel	1146	5	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	89.4886709154976	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGAATGGTAGTATTTAAT	345	False	NA	16	True	GATAAA	-13	NA	24603911	24610854	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_24604038_24606006_24606207_24608581_24608782_24610325
ES_00026827	chr18	+	5370	11	FSM	ENSMUSG00000033632.17	ENSMUST00000097643.10	5351	11	-19	0	2	0	multi-exon	FALSE	canonical	3	22	junction_9	9.53100204595508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTGTAATAATTTTTT	NA	False	NA	12	True	AATAAA	-21	NA	25302057	25600378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995_25423124_25472770_25473442_25477920_25478020_25532982_25533165_25553023_25553133_25596673
ES_00026829	chr18	+	3257	25	FSM	ENSMUSG00000033628.16	ENSMUST00000131405.2	3144	25	-113	0	-56	0	multi-exon	FALSE	canonical	1	1	junction_13	35.8936507848765	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCATATGCCTTGTTTTC	NA	False	NA	6	True	AGTAAA	-17	NA	30405866	30481173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444199_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
ES_00026830	chr18	+	3253	25	FSM	ENSMUSG00000033628.16	ENSMUST00000115812.10	3257	25	4	0	4	0	multi-exon	FALSE	canonical	3	114	junction_11	21.8495089571063	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTTGTTTTCCCTGTC	NA	False	NA	12	True	AGTAAA	-23	NA	30405803	30481179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
ES_00026832	chr18	+	4052	21	FSM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	-37	0	-25	0	multi-exon	FALSE	canonical	3	84	junction_13	29.4439722184355	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGAGCAGTTTGCCTCT	6780	False	NA	8	True	AATAAA	-20	NA	31767398	31856114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ES_00026833	chr18	+	4060	21	FSM	ENSMUSG00000024260.15	ENSMUST00000235017.2	4030	21	-30	0	-30	0	multi-exon	FALSE	canonical	3	64	junction_13	32.249767441022	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGAGCAGTTTGCCTCT	6775	False	NA	8	True	AATAAA	-20	NA	31767393	31856114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815059_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ES_00026834	chr18	+	3940	21	NIC	ENSMUSG00000024260.15	novel	400	3	NA	NA	16	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	43.0866568672948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGAGCAGTTTGCCT	7535	False	NA	6	True	AATAAA	-18	NA	31768153	31856112	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_31768185_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815059_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ES_00026839	chr18	+	1048	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	-33	0	-33	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922178	31929754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
ES_00026841	chr18	+	2416	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCACTGTTAGAATCT	5733	False	NA	7	True	AATAAA	-18	NA	31937228	31968475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
ES_00026843	chr18	+	9613	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACTAATGCTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32200793	32237381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ES_00026847	chr18	+	2194	15	FSM	ENSMUSG00000024381.17	ENSMUST00000091967.13	2091	15	-107	4	-92	0	multi-exon	FALSE	canonical	3	7	junction_10	7.8846919627173	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACGAGGCGTGTCTT	NA	False	NA	12	True	AAAAAG	-19	NA	32510190	32568786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
ES_00026849	chr18	+	6689	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	-7	-2227	-7	2227	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTAAAGTTTCATTCTT	8957	False	NA	NA	False	ATTAAA	-14	NA	32970270	33002874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ES_00026850	chr18	+	2906	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
ES_00026851	chr18	+	3078	8	FSM	ENSMUSG00000038299.17	ENSMUST00000234798.2	3063	8	-15	0	-15	0	multi-exon	FALSE	canonical	3	688	junction_1	67.4473339513346	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGGCTTTTGATGAAACA	836	False	NA	34	True	ATTAAA	-27	NA	32986144	32999473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ES_00026855	chr18	+	12811	16	FSM	ENSMUSG00000005871.16	ENSMUST00000079362.13	12811	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	20.0838243370131	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAACTAAAGTAACTA	NA	False	NA	NA	False	NA	NA	NA	34354036	34455605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431475_34431855_34433018_34433115_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
ES_00026860	chr18	+	974	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	-18	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464210	34469606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
ES_00026861	chr18	+	3674	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	0	0	0	0	multi-exon	FALSE	canonical	3	938	junction_13	99.0044268869321	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCCACGAAGTTCTC	5977	False	NA	NA	False	AGTAAA	-10	NA	34757787	34766330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ES_00026862	chr18	+	3605	19	FSM	ENSMUSG00000003779.17	ENSMUST00000166044.3	3107	19	-26	-472	0	0	multi-exon	FALSE	canonical	3	116	junction_1	232.455445087047	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCCACGAAGTTCTC	6249	False	NA	NA	False	AGTAAA	-10	NA	34758059	34766330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34758317_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ES_00026863	chr18	+	4260	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCCATTTTCCCAAGC	5083	False	NA	4	True	AATAAA	-11	NA	34892604	34906791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
ES_00026864	chr18	+	2086	7	FSM	ENSMUSG00000038773.12	ENSMUST00000224715.2	2032	7	-54	0	-35	0	multi-exon	FALSE	canonical	3	241	junction_6	14.229273425661	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAAGTCGTATTTTTCT	NA	False	NA	27	True	AATAAA	-36	NA	34910064	34937686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502
ES_00026866	chr18	+	6091	23	NIC	ENSMUSG00000038773.12	novel	6363	24	NA	NA	-8	339	combination_of_known_junctions	FALSE	canonical	3	21	junction_6	70.7726104979477	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGAGTAGACAAAATTCT	NA	False	NA	154	True	ATTAAA	-17	NA	34910110	34972052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ES_00026867	chr18	+	6688	24	NNC	ENSMUSG00000038773.12	novel	6363	24	NA	NA	-8	339	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_20	71.6353927161918	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGAGTAGACAAAATTCT	NA	False	NA	154	True	ATTAAA	-17	NA	34910110	34972052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502_34937103_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964479_34964617_34966363_34966541_34967269_34967405_34970642
ES_00026870	chr18	+	3733	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	0	0	0	0	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGAAGTCGTTCTT	NA	False	NA	33	True	AATAAA	-21	NA	35251911	35387832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
ES_00026871	chr18	+	1180	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	10	0	10	0	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTGTGTAGTTGGTC	NA	False	NA	NA	False	NA	NA	NA	35686433	35691369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ES_00026874	chr18	+	1680	3	FSM	ENSMUSG00000117869.2	ENSMUST00000235750.2	1676	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	201	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACATTGGAATTTCATTG	NA	False	NA	NA	False	NA	NA	NA	35686456	35690935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35687515_35689668_35689745_35690389
ES_00026876	chr18	+	6126	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	-11	147	1	-147	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTAGACTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	35695199	35726741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ES_00026877	chr18	+	4218	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	-72	-2292	1	-962	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTTCCCCAGATGT	NA	False	NA	NA	False	TTTAAA	-38	NA	35695199	35725926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ES_00026882	chr18	+	1530	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	-8	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTGCTTGTGTTAT	4664	False	NA	19	True	AATAAA	-13	NA	35731693	35750236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ES_00026883	chr18	+	1588	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236868.2	683	4	-108	-797	-29	0	multi-exon	FALSE	canonical	3	144	junction_1	1322.78519294202	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4611	False	NA	22	True	AATAAA	-16	NA	35731640	35750239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35731897_35743923_35744088_35746375_35746556_35749251
ES_00026885	chr18	+	1487	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	-12	0	-12	0	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4628	False	NA	22	True	AATAAA	-16	NA	35731657	35750239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ES_00026886	chr18	+	771	7	FSM	ENSMUSG00000037058.17	ENSMUST00000235210.2	766	7	-5	0	-5	0	multi-exon	FALSE	canonical	1	2	junction_1	1378.69765439063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACTGTGTTACACTTACG	5255	False	NA	-65	True	NA	NA	NA	35732284	35749398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35732364_35732765_35732812_35733097_35733171_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ES_00026891	chr18	+	2556	3	NIC	ENSMUSG00000046668.10	novel	2302	3	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	329	junction_2	30	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTCCTGGCTTCTTGCT	NA	False	NA	35	True	AATAAA	-26	NA	35962840	35994742	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_35963293_35991445_35992510_35993702
ES_00026892	chr18	+	2303	3	FSM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	0	-1	0	1	multi-exon	FALSE	canonical	3	48	junction_1	140.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTCCTGGCTTCTTGCT	NA	False	NA	35	True	AATAAA	-26	NA	35962840	35994742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35963040_35991445_35992510_35993702
ES_00026894	chr18	+	2177	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35963378	35994741	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_35963453_35991445_35992510_35993702
ES_00026895	chr18	+	236	2	Antisense	novelGene_ENSMUSG00000118358.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	198	junction_1	0	162	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCCATGTTAGACTGGT	NA	False	NA	NA	False	NA	NA	NA	35985674	36033227	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_+_35985726_36033042
ES_00026897	chr18	+	5879	2	NNC	ENSMUSG00000043991.6	novel	5957	2	NA	NA	5012	-9	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTACTCACTGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	36419161	36425579	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_36419546_36420084
ES_00026901	chr18	+	831	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_1	90	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481749	36536033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36481870_36499567_36499795_36535549
ES_00026904	chr18	+	8223	34	FSM	ENSMUSG00000024483.20	ENSMUST00000155329.9	8223	34	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_33	32.0795613324134	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGAGTGGGGTGTGATC	NA	False	NA	10	True	AATAAA	-14	NA	36693663	36791961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36791452
ES_00026908	chr18	+	3518	9	FSM	ENSMUSG00000024483.20	ENSMUST00000037072.11	3518	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	60.5825882576834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGGGTGTGATCCTTTC	NA	False	NA	15	True	AATAAA	-19	NA	36777350	36791966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36791452
ES_00026910	chr18	+	2831	3	FSM	ENSMUSG00000033272.13	ENSMUST00000186538.7	2842	3	11	0	11	0	multi-exon	FALSE	canonical	3	269	junction_1	96	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGTCCTGTCTTCTGT	NA	False	NA	19	True	AATAAA	-37	NA	36812278	36816914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36812677_36813568_36813668_36814580
ES_00026912	chr18	+	2362	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGTACAGTTGTCCTG	NA	False	NA	11	True	AATAAA	-29	NA	36812631	36816906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
ES_00026913	chr18	+	1739	9	FSM	ENSMUSG00000006850.9	ENSMUST00000237727.2	1736	9	-9	6	-9	-6	multi-exon	FALSE	canonical	3	18	junction_3	17.9164728671689	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGTCAGAAGCATCTTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	36868082	36872879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36868310_36868440_36868554_36870509_36870633_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207
ES_00026916	chr18	+	717	5	FSM	ENSMUSG00000006850.9	ENSMUST00000237559.2	732	5	0	15	0	-15	multi-exon	FALSE	canonical	3	53	junction_4	5.71729831301464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCCTTTTGACCCATTT	NA	False	NA	NA	False	NA	NA	NA	36868219	36871362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148
ES_00026922	chr18	+	2067	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	111	-176	73	176	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGGACCTGAGTTCATT	NA	False	NA	10	True	NA	NA	NA	36916394	36924923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
ES_00026926	chr18	+	2379	3	FSM	ENSMUSG00000001383.10	ENSMUST00000235399.2	707	3	-58	-1614	-58	31	multi-exon	FALSE	canonical	3	554	junction_2	104.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCTGTGTAGCATCTGA	8437	False	NA	53	True	NA	NA	NA	36928749	36932750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36929164_36929551_36929698_36930931
ES_00026929	chr18	+	6307	1	FSM	ENSMUSG00000073590.4	ENSMUST00000192137.2	6292	1	35	-50	35	50	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGGAAACGTCTGCCTG	NA	False	NA	NA	False	AAAAAG	-44	NA	37788538	37794845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_37788500_37794800
ES_00026934	chr18	+	4912	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	168	0	-25	0	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	7889	False	NA	17	True	AATAAA	-20	NA	37898800	37974926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
ES_00026935	chr18	+	4710	4	FSM	ENSMUSG00000102918.2	ENSMUST00000076807.7	4687	4	-23	0	23	0	multi-exon	FALSE	canonical	3	36	junction_1	87.788888185743	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	17	True	AATAAA	-20	NA	37939439	37974926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_37942031_37958073_37958133_37966317_37966407_37972955
ES_00026940	chr18	+	1858	7	FSM	ENSMUSG00000024442.7	ENSMUST00000236078.2	1837	7	-21	0	-1	0	multi-exon	FALSE	canonical	3	315	junction_6	32.9515637801236	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTGAAGATATTGAATA	3962	False	NA	NA	False	NA	NA	NA	38383306	38388605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522
ES_00026942	chr18	+	354	2	FSM	ENSMUSG00000060450.15	ENSMUST00000238031.2	796	2	-11	453	-11	44	multi-exon	FALSE	canonical	3	200	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCTAAGCTTAAGCGGAC	950	False	NA	NA	False	NA	NA	NA	38429711	38433020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38429852_38432806
ES_00026943	chr18	+	3166	11	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	89.3559734992575	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGTAATTGAAGTAGACA	950	False	NA	10	True	AATAAA	-15	NA	38429711	38450889	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ES_00026945	chr18	+	3019	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	21	0	-14	0	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACACGGTGTCCTGTTG	947	False	NA	23	True	AATAAA	-28	NA	38429708	38450902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ES_00026949	chr18	+	3097	11	NNC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-1	-22	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_4	94.2422941146914	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATAAAGTAATTTAAGAT	984	False	NA	-12	True	NA	NA	NA	38429745	38450867	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432950_38433464_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ES_00026950	chr18	+	2802	8	NNC	ENSMUSG00000060450.15	novel	2886	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_2	78.3558080365535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGACACGGTGTCCTGT	997	False	NA	21	True	AATAAA	-26	NA	38429758	38450900	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_38429852_38432806_38432950_38433464_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ES_00026951	chr18	+	1796	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTGTTTCATTTGGGG	9067	False	NA	44	True	AATAAA	-29	NA	38551959	38598250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ES_00026952	chr18	+	1719	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236480.2	838	8	-42	-839	0	16	multi-exon	FALSE	canonical	3	26	junction_5	228.987121997758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCTTACATTGGCTGAT	9102	False	NA	60	True	AATAAA	-45	NA	38551994	38598266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585425_38589107_38589175_38593597_38593704_38597329
ES_00026953	chr18	+	1793	8	FSM	ENSMUSG00000024425.5	ENSMUST00000025293.5	1392	8	-27	-374	0	16	multi-exon	FALSE	canonical	3	22	junction_7	234.910230357323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCTTACATTGGCTGAT	9102	False	NA	60	True	AATAAA	-45	NA	38551994	38598266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597313
ES_00026959	chr18	+	6430	21	FSM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	-18	-111	1	0	multi-exon	FALSE	canonical	3	82	junction_6	14.1470845052965	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTAATTCTGGCTTGT	NA	False	NA	19	True	ACTAAA	-2	NA	42408418	42474607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
ES_00026960	chr18	+	6280	20	FSM	ENSMUSG00000024491.17	ENSMUST00000091920.6	6266	20	-14	0	-14	0	multi-exon	TRUE	canonical	3	13	junction_8	26.3045239044415	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTAATTCTGGCTTGT	NA	False	NA	19	True	ACTAAA	-2	NA	42408403	42474607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
ES_00026964	chr18	+	4673	23	FSM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-166	-981	-130	32	multi-exon	FALSE	canonical	3	105	junction_21	184.268556260818	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	42644421	42708890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707224_42707319_42707582
ES_00026965	chr18	+	2389	16	FSM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	-24	0	-12	0	multi-exon	FALSE	canonical	3	14	junction_12	245.611128955238	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAAAGAAGATTC	NA	False	NA	NA	False	NA	NA	NA	42644539	42697259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42684174_42684226_42685556_42685693_42686472_42686563_42693998_42694118_42697147
ES_00026967	chr18	+	850	4	FSM	ENSMUSG00000024498.17	ENSMUST00000237390.2	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	217.663859093685	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAAACAGCAGATGGGA	NA	False	NA	-70	True	NA	NA	NA	42657003	42669354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_42657418_42663694_42663956_42668149_42668213_42669242
ES_00026971	chr18	+	3373	2	FSM	ENSMUSG00000024498.17	ENSMUST00000237901.2	3373	2	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAGAAAGAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	42686446	42697255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_42686563_42693998
ES_00026974	chr18	+	405	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	-7	0	-7	0	multi-exon	FALSE	canonical	3	169	junction_1	0	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCCCTTTTTGTTTTTC	NA	False	NA	13	True	AATAAA	-14	NA	44513561	44529152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_44513754_44528939
ES_00026975	chr18	+	8616	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGGTTTTTTTGTTCT	NA	False	NA	15	True	AATAAA	-20	NA	44513593	44558036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
ES_00026982	chr18	+	2165	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	841.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730864	46742316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_46731224_46731707_46731768_46740570
ES_00026985	chr18	+	1015	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	-223	0	-178	0	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTATAAATATTT	NA	False	NA	-11	True	TTTAAA	-1	NA	47091704	47168874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
ES_00026986	chr18	+	1677	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234701.2	528	6	-242	-907	-178	0	multi-exon	FALSE	canonical	3	144	junction_2	502.986441169143	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091704	47221062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_47091996_47093482_47093574_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ES_00026988	chr18	+	1627	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	-17	0	-17	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091865	47221062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ES_00026989	chr18	+	1396	5	FSM	ENSMUSG00000042705.10	ENSMUST00000234085.2	494	5	-117	-785	-55	-2	multi-exon	FALSE	canonical	3	159	junction_2	523.690271057235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCAAGCGTACAATGTTT	NA	False	NA	24	True	AATAAA	-25	NA	47091827	47221060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_47091996_47093482_47093574_47123545_47123657_47219318_47219379_47220094
ES_00027004	chr18	+	1990	16	NNC	ENSMUSG00000034484.9	novel	2067	15	NA	NA	0	58759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	324.033509926914	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAATGGAGTCAGTG	NA	False	NA	NA	False	NA	NA	NA	53309460	53412696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443_53353907_53412669
ES_00027005	chr18	+	2144	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	-167	0	-167	0	multi-exon	TRUE	canonical	3	19	junction_3	2.70801280154532	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGAGTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	53378566	53523992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
ES_00027007	chr18	+	4592	14	NIC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	-34	213	combination_of_known_junctions	FALSE	canonical	3	18	junction_10	80.3450399451452	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATCTAAGCTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	53995159	54088833	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065262_54065412_54066521_54066618_54069924_54070021_54081119_54081227_54081716_54081741_54086316
ES_00027008	chr18	+	3458	12	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	0	-764	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_8	32.497425199977	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTGTATTTTGTAATT	NA	False	NA	NA	False	AATGAA	-38	NA	53995193	54087856	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54086316
ES_00027010	chr18	+	2230	13	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	163	288	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_11	65.9298343358722	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTTGTGGCATCTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	53995422	54086833	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54081716_54081741_54086316
ES_00027019	chr18	+	4294	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	-53	-3718	-53	0	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTGTGCAATGATTTAA	NA	False	NA	9	True	AATAAA	-19	NA	57506910	57526025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ES_00027027	chr18	+	1543	2	FSM	ENSMUSG00000024603.9	ENSMUST00000223590.2	1530	2	-13	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTACAAAGTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	60659272	60661050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_60659438_60659672
ES_00027031	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	2680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907667	60911618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ES_00027032	chr18	+	641	6	NNC	ENSMUSG00000024608.12	novel	597	5	NA	NA	0	50901	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	10470.3724556484	2568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGGCTCAGTGGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	60907667	60962519	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502_60911613_60962469
ES_00027033	chr18	+	622	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	-16	-4	0	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60907736	60911617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ES_00027037	chr18	+	2994	2	FSM	ENSMUSG00000036412.6	ENSMUST00000040359.6	2975	2	-19	0	-19	0	multi-exon	FALSE	canonical	0	0	junction_1	0	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGAGATGCTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	61044832	61051633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61045623_61049429
ES_00027040	chr18	+	1489	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	-5	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	613.012254927549	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	467	False	NA	25	True	ATTAAA	-16	NA	61688383	61715187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
ES_00027042	chr18	+	2323	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	467	False	NA	27	True	ATTAAA	-20	NA	61688383	61721375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ES_00027045	chr18	+	588	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61772840_61778233_61778437_61780274
ES_00027049	chr18	+	1041	3	NNC	ENSMUSG00000098702.2	novel	890	2	NA	NA	15	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATCTCTCAGTTTGCAGTT	NA	False	NA	15	True	AATAAA	-29	NA	61859475	61868992	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_61860074_61867419_61867539_61868668
ES_00027050	chr18	+	905	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	-15	0	-15	0	multi-exon	FALSE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGATCTCTCAGTTTGC	NA	False	NA	11	True	AATAAA	-25	NA	61859488	61868988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61860074_61868668
ES_00027056	chr18	+	3647	13	FSM	ENSMUSG00000024581.14	ENSMUST00000150267.2	1129	13	0	-2518	0	0	multi-exon	FALSE	canonical	2	11	junction_10	86.248671487353	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110971	63132521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63125411_63125562_63127382_63127463_63128033_63128164_63129887
ES_00027061	chr18	+	456	1	FSM	ENSMUSG00000118264.2	ENSMUST00000235992.2	443	1	-13	0	-13	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGGCCATTAAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	64421415	64421871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_64421400_64421900
ES_00027064	chr18	+	4802	30	FSM	ENSMUSG00000024589.19	ENSMUST00000236736.2	4802	30	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_13	18.1799042339286	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTGGGGGGAGGGGAGA	NA	False	NA	NA	False	NA	NA	NA	65021028	65347798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65021167_65130418_65130493_65207794_65207877_65210768_65210808_65213088_65213143_65276866_65276918_65288326_65288389_65288716_65288820_65290915_65291083_65294585_65294722_65296065_65296243_65298642_65298718_65305345_65305478_65305986_65306107_65307115_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
ES_00027068	chr18	+	6351	10	NIC	ENSMUSG00000042439.14	novel	5757	10	NA	NA	-23	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	22.2660678562196	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACATAGTCAAACTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	65713892	65822512	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_65714220_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ES_00027069	chr18	+	5932	11	NIC	ENSMUSG00000042439.14	novel	5175	10	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	27.4925444439033	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	NA	False	NA	8	True	AATAAA	-21	NA	65713893	65822011	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_65714220_65715797_65715881_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ES_00027075	chr18	+	2848	5	FSM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	-19	0	-15	0	multi-exon	FALSE	canonical	3	355	junction_1	12.6565200588471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933601	65950736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65933783_65942515_65942626_65945735_65948029_65949891_65949950_65950530
ES_00027092	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	AATAAA	-11	NA	67908044	67925663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
ES_00027098	chr18	+	8123	46	NNC	ENSMUSG00000024542.10	novel	8093	46	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_43	31.5891370608143	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTTTTTGTATTTTA	80	False	NA	10	True	AATAAA	-19	NA	67933149	68018241	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013818_68013949_68014354_68014414_68017809
ES_00027099	chr18	+	3113	17	FSM	ENSMUSG00000024542.10	ENSMUST00000224921.2	3113	17	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	24.4259083761485	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTTTTTGTATTTTA	NA	False	NA	10	True	AATAAA	-19	NA	67987213	68018241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011732_68013821_68013949_68014354_68014414_68017809
ES_00027104	chr18	+	2480	7	FSM	ENSMUSG00000009535.14	ENSMUST00000151833.2	2474	7	-6	0	0	0	multi-exon	FALSE	canonical	3	867	junction_3	84.7042239534461	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGTGAAA	NA	False	NA	NA	False	AATAGA	-5	NA	68433462	68448521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058
ES_00027105	chr18	+	3627	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114982.8	3694	20	67	0	15	0	multi-exon	FALSE	canonical	2	4	junction_1	28.7490816425648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAAAAAAATGCC	3259	False	NA	NA	False	AAAAAG	-30	NA	69478858	69817597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_69479011_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
ES_00027108	chr18	+	3248	20	NIC	ENSMUSG00000053477.19	novel	2192	20	NA	NA	27	-219	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	25.7485174249798	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGGGATTTTCAGAGG	3671	False	NA	NA	False	AAAAAG	-36	NA	69479270	69817195	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697107_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
ES_00027114	chr18	+	1618	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058536	70102555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
ES_00027117	chr18	+	1290	3	FSM	ENSMUSG00000024513.17	ENSMUST00000114946.4	1290	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	64.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGAAGTGCCTGGTGT	NA	False	NA	13	True	AATAAA	-30	NA	70701404	70715983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_70702039_70713723_70713884_70715487
ES_00027118	chr18	+	1281	3	NNC	ENSMUSG00000024513.17	novel	1290	3	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	140	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGAAGTGCCTGGTGT	NA	False	NA	13	True	AATAAA	-30	NA	70701350	70715983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_70702039_70713723_70713884_70715550
ES_00027121	chr18	+	2492	14	NNC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	97	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	92.4449620364309	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGCTCTCTCTCAATAG	NA	False	NA	13	True	AATAAA	-16	NA	74349298	74354563	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354049_74354129
ES_00027124	chr18	+	1491	8	NNC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	143	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	84.8703693395801	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74352054	74354564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_74352310_74352456_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ES_00027128	chr18	+	4681	16	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	19.7033556081755	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATGTTAGTGTTTC	NA	False	NA	NA	False	TTTAAA	-17	NA	74401267	74414305	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
ES_00027129	chr18	+	2839	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	-1	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401360	74415756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
ES_00027133	chr18	+	963	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	-99	-340	-98	0	multi-exon	FALSE	canonical	3	91	junction_1	354	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138840	75143004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_75138972_75141721_75141898_75142348
ES_00027135	chr18	+	1300	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	-34	0	-2	0	multi-exon	FALSE	canonical	3	388	junction_1	205.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGATGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	75138936	75143223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_75139186_75141721_75141898_75142348
ES_00027137	chr18	+	1636	9	FSM	ENSMUSG00000035765.11	ENSMUST00000236220.2	1571	9	-69	4	-69	-4	multi-exon	FALSE	canonical	2	9	junction_8	64.1424196612507	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCCAGTTTGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	75151782	75239486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75238937
ES_00027138	chr18	+	2529	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	-73	0	-69	0	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151782	75420035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
ES_00027142	chr18	+	1418	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	-23	7	-23	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAAGCGTCTGATTT	NA	False	NA	8	True	AATAAA	-10	NA	77017689	77029301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_77017913_77027263_77027366_77028208
ES_00027143	chr18	+	1565	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	-51	-11	-23	4	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGATTTATGCCTTTATA	NA	False	NA	19	True	AATAAA	-21	NA	77017689	77029312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
ES_00027146	chr18	+	4405	7	FSM	ENSMUSG00000025421.16	ENSMUST00000148955.3	3069	7	0	-1336	0	-1069	multi-exon	FALSE	canonical	0	0	junction_2	159.414292542001	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATGCTGGGCACTGAGG	NA	False	NA	NA	False	NA	NA	NA	77032132	77061934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_77032224_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ES_00027147	chr18	+	2088	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26823	-13	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTACAAACTTAACTATG	6262	False	NA	6	True	ATTAAA	-18	NA	77126080	77234620	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ES_00027148	chr18	+	4958	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26781	1910	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	341.46650267483	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6304	False	NA	7	True	AATAAA	-18	NA	77126122	77243406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ES_00027150	chr18	+	2272	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26642	-3	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACTATGTAGCATTTAT	6443	False	NA	16	True	ATTAAA	-28	NA	77126261	77234630	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ES_00027151	chr18	+	5174	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26642	1910	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6443	False	NA	7	True	AATAAA	-18	NA	77126261	77243406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ES_00027152	chr18	+	5159	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	1910	at_least_one_novel_splicesite	FALSE	canonical	3	109	junction_13	342.490737576133	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6432	False	NA	7	True	AATAAA	-18	NA	77126250	77243406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240336
ES_00027153	chr18	+	5135	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26641	1910	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	364.190731470323	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6444	False	NA	7	True	AATAAA	-18	NA	77126262	77243406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77240310
ES_00027154	chr18	+	3060	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCATAATTCTCATCAAT	7899	False	NA	NA	False	CATAAA	-17	NA	77152903	77241496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ES_00027155	chr18	+	5679	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	109	junction_13	417.061799232078	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	7929	False	NA	13	True	AATAAA	-26	NA	77152933	77240813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398_77237795_77240336
ES_00027157	chr18	+	2077	13	FSM	ENSMUSG00000025423.17	ENSMUST00000114776.4	2077	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	406.688660607432	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	8381	False	NA	19	True	ATTAAA	-31	NA	77153385	77234633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_77153604_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ES_00027163	chr18	+	2650	9	ISM	ENSMUSG00000025429.10	ENSMUST00000114741.4	2267	15	75707	-878	75707	878	3prime_fragment	FALSE	canonical	3	30	junction_2	5.23061898822692	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	9100	False	NA	NA	False	AATAAA	-20	NA	77957951	77971457	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_+_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ES_00027167	chr18	+	395	1	FSM	ENSMUSG00000117813.2	ENSMUST00000237811.2	534	1	23	116	23	-116	mono-exon	FALSE	NA	NA	NA	NA	NA	370	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCTGCACTCTCTACGC	NA	False	NA	NA	False	NA	NA	NA	80002243	80002638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80002200_80002600
ES_00027170	chr18	+	1704	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	-21	0	12	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-12	NA	80249991	80255947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
ES_00027175	chr18	+	1756	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80250108	80255956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
ES_00027178	chr18	+	2122	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	-207	-4	-173	0	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTCATGTGGTGTAAG	NA	False	NA	6	True	AATAAA	-39	NA	80299325	80335931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ES_00027184	chr18	+	5826	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15100	0	at_least_one_novel_splicesite	FALSE	canonical	3	187	junction_2	10.2713192920871	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTTTGACCTGTGGTT	NA	False	NA	52	True	NA	NA	NA	82990832	83023439	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_82990974_83004868_83006324_83011194_83011315_83012594_83012663_83019397
ES_00027189	chr18	+	1529	10	FSM	ENSMUSG00000034391.13	ENSMUST00000223789.3	1557	10	28	0	28	0	multi-exon	FALSE	canonical	1	1	junction_1	268.357187805569	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	NA	False	NA	-12	True	NA	NA	NA	84970268	84999501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_84970384_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ES_00027198	chr18	+	210	1	Intergenic	novelGene_2020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTATACTCTTTTACAT	NA	False	NA	NA	False	NA	NA	NA	90562916	90563126	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_90562900_90563100
ES_00027201	chr18	-	2550	6	NIC	ENSMUSG00000063889.17	novel	1996	8	NA	NA	15	-22	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	27.7459907013608	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAATATTACTTTCTTT	25	False	NA	-24	True	NA	NA	NA	3337664	3266377	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3325360_3325479_3337379
ES_00027202	chr18	-	1437	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	0	-15	0	15	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTATGTAGTTATTAGAA	-20	True	NA	NA	False	ATTAAA	-29	NA	3337589	3294168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
ES_00027203	chr18	-	1256	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	-5	True	NA	-6	True	AATAAA	-12	NA	3337574	3294481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ES_00027204	chr18	-	1360	6	ISM	ENSMUSG00000063889.17	ENSMUST00000154470.8	1996	8	166	27223	7	-2	5prime_fragment	FALSE	canonical	3	12	junction_4	28.2460616723819	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATTTAGTCTTGTGCAT	-13	True	NA	-8	True	AATAAA	-10	NA	3337582	3294483	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
ES_00027205	chr18	-	1076	5	NIC	ENSMUSG00000063889.17	novel	1553	9	NA	NA	26	-31	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	36.9145973836909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTGGAAGCTCTAATAAA	227	False	NA	-37	True	NA	NA	NA	3337462	3294512	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_3295183_3295321_3295417_3309645_3309756_3325360_3325479_3337379
ES_00027206	chr18	-	3993	1	FSM	ENSMUSG00000073647.5	ENSMUST00000097690.5	619	1	-235	-3139	-235	3139	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTAATTACTATCATC	161	False	NA	NA	False	NA	NA	NA	4199173	4195180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_4195200_4199200
ES_00027207	chr18	-	2555	8	FSM	ENSMUSG00000024235.12	ENSMUST00000025078.10	2569	8	0	14	0	0	multi-exon	FALSE	canonical	2	4	junction_5	7.63450812336422	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTATTTTGTCTTAATTTT	406	False	NA	NA	False	AATAAA	-12	NA	4353015	4331340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_4332437_4333817_4334065_4334616_4334770_4339496_4339604_4340546_4340809_4343021_4343190_4348980_4349339_4352851
ES_00027208	chr18	-	3211	5	FSM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	5.40832691319598	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGTTGTTTTCTTAA	362	False	NA	NA	False	CATAAA	-17	NA	5334439	5210028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334345
ES_00027211	chr18	-	4717	18	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-11	-17	combination_of_known_junctions	FALSE	canonical	3	59	junction_14	38.8663756441135	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTTCCTTCCTTTCT	29	True	NA	-10	True	ATTAAA	-34	NA	6135918	6024443	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ES_00027212	chr18	-	3934	16	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	8	-17	combination_of_known_junctions	FALSE	canonical	3	24	junction_15	50.5179396078484	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTTCCTTCCTTTCT	20	True	NA	-10	True	ATTAAA	-34	NA	6135927	6024443	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6135803
ES_00027213	chr18	-	4834	18	FSM	ENSMUSG00000041225.17	ENSMUST00000077128.13	4431	18	-63	-340	0	-18	multi-exon	FALSE	canonical	3	72	junction_11	36.3783463484115	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATATTTTCCTTCCTTTC	-23	True	NA	-11	True	ATTAAA	-33	NA	6135970	6024444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ES_00027214	chr18	-	4162	20	FSM	ENSMUSG00000041225.17	ENSMUST00000182213.8	4162	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	53.935942307298	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAATGTGCGTTTTAGTT	-13	True	NA	-3	True	AATAAA	-34	NA	6135960	6025196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6056978_6056994_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ES_00027215	chr18	-	4697	17	FSM	ENSMUSG00000041225.17	ENSMUST00000182383.8	2500	17	-82	-2115	0	-14	multi-exon	FALSE	canonical	3	59	junction_13	36.3438440454501	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTCCTTCCTTTCTTTT	-23	True	NA	-7	True	ATTAAA	-37	NA	6135970	6024440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ES_00027216	chr18	-	6032	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	215.348105169282	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGACGTATTAGCTTG	-5	True	NA	0	True	AATAAA	-42	NA	6241523	6201001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ES_00027217	chr18	-	5837	27	NNC	ENSMUSG00000006740.15	novel	6032	26	NA	NA	8	-18	intron_retention	TRUE	non_canonical	0	0	junction_1	281.066818057589	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACATTTGAACCTTACT	3	True	NA	-18	True	AATAAA	-24	NA	6241515	6201019	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_6202202_6202370_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ES_00027218	chr18	-	522	2	FSM	ENSMUSG00000006740.15	ENSMUST00000166249.2	456	2	-66	0	-66	0	multi-exon	FALSE	canonical	3	1046	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAGAAGAAAGTGTGAAG	3861	False	NA	NA	False	GATAAA	-42	NA	6223104	6220859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6220996_6222718
ES_00027219	chr18	-	3967	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	0	-2	0	0	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTGGTCTTTGCCTT	-18	True	NA	1	True	AATAAA	-29	NA	6490856	6435950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
ES_00027220	chr18	-	565	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTTATTTAACCTTTTA	-18	True	NA	NA	False	AATAAA	-15	NA	6490856	6489159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6489331_6490462
ES_00027221	chr18	-	489	1	FSM	ENSMUSG00000117359.2	ENSMUST00000234092.2	444	1	3	-48	3	48	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACCTAGTATTTTCCACA	NA	False	NA	NA	False	NA	NA	NA	6760956	6760467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6760500_6761000
ES_00027222	chr18	-	3630	7	FSM	ENSMUSG00000061013.7	ENSMUST00000079788.7	3650	7	10	10	10	-10	multi-exon	FALSE	canonical	2	10	junction_4	2.3392781412697	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCTAGACTTCAGTGAT	NA	False	NA	NA	False	AATAAA	-45	NA	7004770	6934527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6937055_6937167_6937202_6992037_6992374_6992777_6992935_7000592_7000753_7002356_7002624_7004621
ES_00027223	chr18	-	220	1	FSM	ENSMUSG00000117381.2	ENSMUST00000235104.2	227	1	43	-36	43	36	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGCAAGAAAATTTGAAGA	NA	False	NA	NA	False	AAAACA	-42	NA	7044092	7043872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_7043900_7044100
ES_00027224	chr18	-	4975	17	FSM	ENSMUSG00000057440.9	ENSMUST00000115869.4	4981	17	0	6	0	-1	multi-exon	FALSE	canonical	3	19	junction_16	22.8061635035356	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAATAATGCTTTCAAGA	-22	True	NA	NA	False	ATTAAA	-14	NA	7626866	7347964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
ES_00027225	chr18	-	4806	17	NIC	ENSMUSG00000057440.9	novel	4981	17	NA	NA	4	-158	combination_of_known_junctions	FALSE	canonical	3	86	junction_16	10.4634781502137	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAACAATATATCTGCTT	-6	True	NA	NA	False	AATAAA	-6	NA	7626850	7348121	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
ES_00027226	chr18	-	1784	13	FSM	ENSMUSG00000057440.9	ENSMUST00000234571.2	1784	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	25.7265265177145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGTGCTCGTATTTTCC	-17	True	NA	NA	False	AATAAA	-27	NA	7626861	7379647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
ES_00027227	chr18	-	211	2	Genic_Genomic	ENSMUSG00000117505.2	novel	1096	1	NA	NA	572	1961	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATCTTTAAAAA	551	False	NA	NA	False	NA	NA	NA	7868541	7866056	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr18_-_7866218_7868491
ES_00027228	chr18	-	1366	1	FSM	ENSMUSG00000117505.2	ENSMUST00000234126.2	1096	1	-59	-211	-59	211	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCAATATTGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	7869172	7867806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_7867800_7869200
ES_00027229	chr18	-	5759	10	FSM	ENSMUSG00000024286.9	ENSMUST00000053917.6	5757	10	0	-2	0	2	multi-exon	FALSE	canonical	3	51	junction_9	12.9995251575197	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTCATCTCATATGTA	18	False	9450168	2	True	AATAAA	-26	NA	9450150	9312301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_9316673_9319408_9319572_9332783_9332951_9345193_9345314_9345413_9345472_9349387_9349424_9353406_9353508_9377793_9377829_9386734_9386810_9449517
ES_00027230	chr18	-	5710	9	NIC	ENSMUSG00000024286.9	novel	5757	10	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	27.6122708229512	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGACTTCATCTCATATG	-10	True	NA	0	True	AATAAA	-24	NA	9450139	9312303	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_9316673_9319408_9319572_9332783_9332951_9345193_9345314_9345413_9345472_9353406_9353508_9377793_9377829_9386734_9386810_9449517
ES_00027232	chr18	-	545	2	Intergenic	novelGene_1915	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACGTGGCATATGCGA	NA	False	NA	NA	False	NA	NA	NA	9598036	9592387	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_9592561_9597664
ES_00027233	chr18	-	534	2	Intergenic	novelGene_1916	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	1994	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACGTGGCATATGCGA	NA	False	NA	NA	False	NA	NA	NA	9598036	9592387	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_9592544_9597658
ES_00027234	chr18	-	4473	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	0	253	0	-253	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATATAGAGATGTGCA	-60	True	NA	NA	False	NA	NA	NA	10030141	9993318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ES_00027235	chr18	-	1346	7	FSM	ENSMUSG00000047879.18	ENSMUST00000128334.8	1346	7	0	0	0	0	multi-exon	FALSE	canonical	3	830	junction_4	53.4334996878259	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	0	True	NA	NA	False	NA	NA	NA	10030081	10009352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ES_00027236	chr18	-	660	2	FSM	ENSMUSG00000047879.18	ENSMUST00000145929.2	656	2	0	-4	0	0	multi-exon	FALSE	canonical	3	992	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAGAAGAACA	NA	False	NA	NA	False	NA	NA	NA	10016925	10011996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10012272_10016540
ES_00027238	chr18	-	6592	33	NIC	ENSMUSG00000024290.10	novel	6440	33	NA	NA	-155	0	combination_of_known_junctions	TRUE	canonical	3	26	junction_22	39.4484310326469	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGGGCTCTAAAAC	3	True	NA	NA	False	ATTAAA	-21	NA	10182200	10064400	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_10066052_10067470_10067679_10070218_10070481_10070621_10070701_10072831_10072921_10073114_10073186_10079114_10079275_10080350_10080540_10083121_10083211_10084317_10084412_10090812_10090979_10092128_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116860_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
ES_00027239	chr18	-	6621	33	FSM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-181	0	-181	0	multi-exon	TRUE	canonical	3	139	junction_22	28.5588755906111	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGGGCTCTAAAAC	NA	False	NA	NA	False	ATTAAA	-21	NA	10182226	10064400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10066052_10067470_10067679_10070218_10070481_10070621_10070701_10072831_10072921_10073114_10073186_10079114_10079275_10080350_10080540_10083121_10083211_10084317_10084412_10090812_10090979_10092128_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
ES_00027240	chr18	-	1989	14	FSM	ENSMUSG00000024290.10	ENSMUST00000234734.2	1989	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	40.6931074517889	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAAGAGAAGAAATATAG	411	False	NA	-2	True	AAGAAA	-16	NA	10181792	10106350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10106458_10112343_10112393_10116773_10116860_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
ES_00027241	chr18	-	2736	2	Intergenic	novelGene_1919	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTATTTCTAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	10276006	10272256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_10274701_10275714
ES_00027242	chr18	-	884	1	FSM	ENSMUSG00000094111.3	ENSMUST00000179225.3	379	1	-72	-433	-72	433	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAGAACCTGAGGAAA	NA	False	NA	-6	True	AATAAA	-32	NA	10483537	10482653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10482700_10483500
ES_00027244	chr18	-	2249	11	FSM	ENSMUSG00000024293.17	ENSMUST00000145320.2	2249	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	42.8836798794133	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGCTTTTTCTAAGTGA	245	False	10610134	-48	True	AATAAA	-14	NA	10610109	10566629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10595675_10595876_10596338_10596442_10610025
ES_00027245	chr18	-	1892	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	70	0	5	0	multi-exon	FALSE	canonical	2	2	junction_1	3.63145976158349	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTTTGTGAGTTTT	33	True	NA	NA	False	AATAAA	-15	NA	10706701	10644410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
ES_00027246	chr18	-	202	1	Intergenic	novelGene_1920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGGTAGATGGAGAGT	NA	False	NA	NA	False	NA	NA	NA	11744891	11744689	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_11744700_11744900
ES_00027248	chr18	-	2520	1	FSM	ENSMUSG00000117634.2	ENSMUST00000235010.2	2365	1	-166	11	-166	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAAAAGATATTTTTGA	NA	False	NA	NA	False	NA	NA	NA	11791007	11788487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_11788500_11791000
ES_00027250	chr18	-	2653	15	FSM	ENSMUSG00000049411.16	ENSMUST00000209859.2	1426	15	16	-1243	0	105	multi-exon	TRUE	canonical	3	13	junction_4	4.03871569806491	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCAGTGTGGGTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	12254571	12114889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
ES_00027251	chr18	-	5225	25	FSM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	0	-1	0	0	multi-exon	FALSE	canonical	3	21	junction_11	10.5137971521024	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGGTCTTTTATTGCAG	NA	False	NA	-25	True	AATAAA	-17	NA	12369457	12322748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12369237
ES_00027252	chr18	-	3183	13	FSM	ENSMUSG00000044252.19	ENSMUST00000118313.8	2893	13	-201	-89	0	75	multi-exon	FALSE	canonical	3	43	junction_12	94.3352473304061	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAGTGGTCAGTTAGCA	NA	False	NA	67	True	NA	NA	NA	12995971	12888295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
ES_00027254	chr18	-	2776	14	FSM	ENSMUSG00000044252.19	ENSMUST00000117361.8	2687	14	0	-89	0	75	multi-exon	FALSE	canonical	3	16	junction_13	98.4808875218973	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAGTGGTCAGTTAGCA	NA	False	NA	67	True	NA	NA	NA	12996437	12888295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996199
ES_00027255	chr18	-	5393	28	FSM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	64	-1501	0	1501	multi-exon	FALSE	canonical	3	91	junction_13	124.793898676083	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTATGCACAGTCATGTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	13074834	12886869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
ES_00027256	chr18	-	4720	14	FSM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	-189	-1501	52	1501	multi-exon	FALSE	canonical	3	56	junction_13	88.7068171466208	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTATGCACAGTCATGTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	12995919	12886869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
ES_00027257	chr18	-	4273	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	60	-1515	0	1501	multi-exon	TRUE	canonical	3	45	junction_13	91.3749671156418	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTATGCACAGTCATGTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	12996437	12886869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
ES_00027258	chr18	-	2444	13	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	73	-3	intron_retention	TRUE	canonical	3	22	junction_12	99.8294030945904	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAATTTCAGTTGATAT	NA	False	NA	-11	True	AATAAA	-36	NA	12996275	12888373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996128
ES_00027260	chr18	-	5954	8	FSM	ENSMUSG00000024420.10	ENSMUST00000025288.9	6206	8	165	87	26	-84	multi-exon	FALSE	canonical	0	0	junction_3	3.11022015101103	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCACAAGTCATGGAATG	NA	False	NA	NA	False	NA	NA	NA	14105679	13820156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_13822082_13848197_13848314_13850672_13850805_13950294_13950380_13976838_13980192_14072018_14072199_14104420_14104462_14105557
ES_00027262	chr18	-	4159	10	FSM	ENSMUSG00000037013.18	ENSMUST00000040964.13	4153	10	0	-6	0	6	multi-exon	FALSE	canonical	3	40	junction_6	374.482193942845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTATTTGTTATCATT	NA	False	NA	NA	False	AATAAA	-39	NA	14815823	14757248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ES_00027263	chr18	-	5387	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	-465	-1824	-465	399	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTTTGATTTTTTTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	14816436	14756855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ES_00027264	chr18	-	2627	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	-24	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815823	14758687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ES_00027265	chr18	-	2913	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	0	-2	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815885	14758685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ES_00027268	chr18	-	3446	5	FSM	ENSMUSG00000036225.16	ENSMUST00000168989.9	2777	5	15	-684	15	-31	multi-exon	FALSE	canonical	2	9	junction_4	2.1650635094611	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATGAATTAAAATGAAAT	NA	False	NA	NA	False	TTTAAA	-38	NA	15196660	15101772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_15102753_15107036_15107343_15119392_15119538_15140752_15140932_15194824
ES_00027270	chr18	-	4715	16	FSM	ENSMUSG00000024304.15	ENSMUST00000025166.14	4843	16	128	0	128	0	multi-exon	FALSE	canonical	2	10	junction_5	4.09009644004746	555	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTTTGAACTTTTTC	NA	False	NA	-1	True	AATAAA	-20	NA	16942175	16721933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_16723411_16734678_16734844_16755184_16755325_16757207_16757442_16757776_16758011_16760624_16760768_16762515_16762770_16765260_16765447_16766064_16766203_16773478_16773652_16776986_16777132_16779528_16779685_16781543_16781691_16783328_16783556_16907564_16907677_16941391
ES_00027271	chr18	-	4357	16	FSM	ENSMUSG00000024331.12	ENSMUST00000075214.9	4508	16	149	2	149	-2	multi-exon	FALSE	canonical	2	8	junction_1	3.07245829914744	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGTGTGCAGGTGGTGAAG	NA	False	NA	NA	False	AATAAA	-15	NA	20192386	20163691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_20165461_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
ES_00027272	chr18	-	206	1	Intergenic	novelGene_1929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGGAAAGAATTTATTTG	NA	False	NA	NA	False	NA	NA	NA	20783057	20782851	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_20782900_20783100
ES_00027274	chr18	-	5810	9	FSM	ENSMUSG00000056124.6	ENSMUST00000070080.6	5808	9	0	-2	0	2	multi-exon	FALSE	canonical	3	256	junction_5	29.4098197886352	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGATGTCATTGTTTT	NA	False	NA	-1	True	AATATA	-18	NA	20879461	20817653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_20821526_20821991_20822094_20822277_20822401_20825448_20825637_20833795_20833913_20839461_20839587_20853085_20853200_20861018_20861136_20878409
ES_00027275	chr18	-	5203	29	FSM	ENSMUSG00000033382.16	ENSMUST00000225661.3	5194	29	0	-9	0	9	multi-exon	TRUE	canonical	3	24	junction_23	36.8553951689739	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTCCTGTGAAAGCTT	NA	False	NA	-13	True	AATAAA	-28	NA	21029150	20950270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999264_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ES_00027276	chr18	-	5341	29	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-204	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_23	38.3663862233171	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTAGCCTAGTTTCCTG	NA	False	NA	-22	True	AATAAA	-19	NA	21029354	20950279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999264_21000873_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ES_00027277	chr18	-	5521	29	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-325	5	at_least_one_novel_splicesite	FALSE	canonical	3	164	junction_9	17.2092464467595	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTAGTTTCCTGTGAAA	NA	False	NA	-17	True	AATAAA	-24	NA	21029475	20950274	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999261_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ES_00027278	chr18	-	3173	5	FSM	ENSMUSG00000033382.16	ENSMUST00000223584.2	4263	5	181	909	181	567	multi-exon	FALSE	canonical	3	186	junction_1	12.2576506721313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGTTTTAATCATTTT	NA	False	NA	NA	False	NA	NA	NA	20989643	20978634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001
ES_00027280	chr18	-	237	1	FSM	ENSMUSG00000062962.6	ENSMUST00000084199.5	442	1	135	70	135	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAACTCTTCAGCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	21210031	21209794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_21209800_21210000
ES_00027281	chr18	-	7301	6	FSM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	-45	-2333	-45	2333	multi-exon	FALSE	canonical	1	3	junction_2	4.12795348811006	418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTGAAGTCTTTCCTGA	NA	False	NA	-7	True	NA	NA	NA	21433240	21257924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_21263080_21264389_21264557_21280788_21281962_21301792_21301924_21369057_21369199_21432706
ES_00027283	chr18	-	5717	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	2	13	2	-13	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTCTGTTAACCTCTGC	NA	False	NA	NA	False	AATAAA	-23	NA	24153865	24142771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
ES_00027284	chr18	-	1513	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGAAGTTTATA	NA	False	NA	NA	False	TTTAAA	-24	NA	24153377	24146981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
ES_00027285	chr18	-	6096	4	NIC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	5	-21	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGATTTGGGCTCTGTTA	NA	False	NA	NA	False	AATAAA	-15	NA	24153372	24142779	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
ES_00027287	chr18	-	2500	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	0	-2	0	2	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGGGTGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	24255010	24237811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ES_00027288	chr18	-	909	6	FSM	ENSMUSG00000047989.12	ENSMUST00000055012.12	909	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	344.638129057131	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGCTTTCTTCCCCTC	NA	False	NA	-124	True	NA	NA	NA	24254892	24239430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_24239716_24241793_24241940_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ES_00027289	chr18	-	4301	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	0	-2	0	2	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGTGTGTGTGTTA	NA	False	NA	NA	False	AATAAA	-22	NA	24663261	24618014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
ES_00027291	chr18	-	2951	5	FSM	ENSMUSG00000040446.5	ENSMUST00000234403.2	2950	5	0	-1	0	1	multi-exon	FALSE	canonical	3	215	junction_1	46.5886252211846	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCTCATGTTTTTGAA	NA	False	NA	0	True	AATAAA	-19	NA	24663115	24638482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_24640067_24640161_24641149_24641226_24641334_24642849_24642980_24662972
ES_00027295	chr18	-	2303	2	ISM	ENSMUSG00000024268.17	ENSMUST00000115816.3	3995	13	266966	1	-120	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAACCAAAAACC	NA	False	NA	NA	False	AATAAA	-9	NA	25620074	25610689	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_25612769_25619850
ES_00027296	chr18	-	1676	1	FSM	ENSMUSG00000117416.2	ENSMUST00000234906.2	1708	1	64	-32	64	32	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATAGTCAAGTTGGGGGT	NA	False	NA	NA	False	NA	NA	NA	28321806	28320130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_28320100_28321800
ES_00027298	chr18	-	496	1	FSM	ENSMUSG00000055771.3	ENSMUST00000069529.3	370	1	-25	-101	-25	101	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAGCACGTAGCCCAATA	NA	False	NA	NA	False	AATAAA	-34	NA	30628451	30627955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_30628000_30628500
ES_00027299	chr18	-	388	1	FSM	ENSMUSG00000117526.2	ENSMUST00000235078.2	354	1	7	-41	7	41	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	30741936	30741548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_30741500_30741900
ES_00027300	chr18	-	4377	8	FSM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	0	-6	0	6	multi-exon	FALSE	canonical	3	132	junction_7	28.1852472628023	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATATGTTTCTCTTATT	NA	False	NA	NA	False	GATAAA	-18	NA	31742955	31713214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_31716823_31727629_31727688_31730091_31730149_31733184_31733286_31735775_31735854_31738805_31738864_31740274_31740318_31742581
ES_00027303	chr18	-	376	1	Intergenic	novelGene_1942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACACAAACACACTGC	7703	False	NA	NA	False	NA	NA	NA	32029277	32028901	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_32028900_32029300
ES_00027304	chr18	-	2727	1	FSM	ENSMUSG00000044982.8	ENSMUST00000054984.8	2727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCTGGATGGTCTCTG	NA	False	NA	NA	False	TATAAA	-18	NA	32044877	32042150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_32042200_32044900
ES_00027305	chr18	-	5085	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	12	0	12	0	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGATGTATATTTTTA	NA	False	NA	-80	True	AATAAA	-14	NA	33346903	33332407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ES_00027306	chr18	-	558	1	FSM	ENSMUSG00000117730.2	ENSMUST00000237135.2	558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCGCAGCGAATGCTG	NA	False	NA	NA	False	NA	NA	NA	33518008	33517450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33517400_33518000
ES_00027308	chr18	-	3613	24	FSM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	-47	0	0	0	multi-exon	FALSE	canonical	3	87	junction_23	34.3352756377329	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTCTCTTTACTG	NA	False	NA	0	True	AATAAA	-13	NA	34140019	33929379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
ES_00027310	chr18	-	2222	18	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	0	-21717	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_13	50.8174696823198	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACCTTCTTGTCTTTTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	34140019	33957309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013319_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
ES_00027312	chr18	-	2855	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	0	-3	0	3	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAAAATGTTGTTTTATT	5561	False	NA	-4	True	AATAAA	-30	NA	34506422	34477934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
ES_00027313	chr18	-	5028	21	NNC	ENSMUSG00000036501.8	novel	3344	21	NA	NA	0	1780	at_least_one_novel_splicesite	TRUE	canonical	3	9	junction_16	11.2338773359869	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTGTAAATGTATGTTT	NA	False	NA	-27	True	AATAAA	-19	NA	34639876	34573623	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34624069_34624166_34627209_34627352_34627651_34627830_34630386_34630600_34632738_34632906_34639581
ES_00027314	chr18	-	3344	21	FSM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_18	10.452152888281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTTTTTCTTTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	34639876	34575403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209_34627352_34627651_34627830_34630386_34630600_34631020_34631213_34632738_34632906_34639581
ES_00027316	chr18	-	203	2	Intergenic	novelGene_1950	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4279	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGCCTACAGCTATACCA	NA	False	NA	NA	False	NA	NA	NA	34708933	34667745	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_34667897_34708881
ES_00027317	chr18	-	5561	20	FSM	ENSMUSG00000003778.15	ENSMUST00000152612.8	4335	20	0	-1226	0	11	multi-exon	FALSE	canonical	3	50	junction_7	140.778976490123	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGACCCTTTTTAAAAAT	NA	False	NA	NA	False	AATAAA	-28	NA	34757606	34731656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ES_00027318	chr18	-	4479	22	FSM	ENSMUSG00000003778.15	ENSMUST00000003876.10	4468	22	0	-11	0	11	multi-exon	FALSE	canonical	3	307	junction_21	99.9950565671548	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGACCCTTTTTAAAAAT	NA	False	NA	NA	False	AATAAA	-28	NA	34757654	34731656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ES_00027319	chr18	-	4269	21	FSM	ENSMUSG00000003778.15	ENSMUST00000115766.8	4258	21	0	-11	0	11	multi-exon	FALSE	canonical	3	33	junction_11	140.007142674936	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGACCCTTTTTAAAAAT	NA	False	NA	NA	False	AATAAA	-28	NA	34757654	34731656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ES_00027320	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757654	34732911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ES_00027321	chr18	-	3387	23	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	-265	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_22	141.509490672581	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757919	34732911	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590_34757738_34757839
ES_00027322	chr18	-	3144	23	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	-219	-358	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_7	161.595588731626	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCATTGAAGCAGATATG	NA	False	NA	NA	False	NA	NA	NA	34757873	34733269	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34738980_34739040_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ES_00027323	chr18	-	3869	21	FSM	ENSMUSG00000003778.15	ENSMUST00000115765.2	3869	21	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_20	102.255794456842	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAAGAATAA	NA	False	NA	NA	False	NA	NA	NA	34757654	34734227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ES_00027325	chr18	-	2093	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	-9	0	9	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTTTCTAGAGTTTATA	NA	False	NA	NA	False	AATAAA	-23	NA	34784788	34763994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ES_00027326	chr18	-	2389	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	17	1727	0	268	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTAAAATCTTCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	34784771	34766462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ES_00027329	chr18	-	348	1	Intergenic	novelGene_1953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAATAAATAAATCTTT	1082	False	NA	NA	False	NA	NA	NA	34861708	34861360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_34861400_34861700
ES_00027330	chr18	-	1956	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	0	-11	0	11	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAAGCCTGTCGTGCTGA	2792	False	NA	-4	True	AATAAA	-33	NA	34884586	34866034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
ES_00027333	chr18	-	3709	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35065060	35035837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ES_00027334	chr18	-	3052	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	-3	0	3	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	1860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCGTTGTAATCTTCTATC	199	False	NA	-16	True	CATAAA	-8	NA	35087410	35070463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ES_00027337	chr18	-	766	1	FSM	ENSMUSG00000118145.2	ENSMUST00000237898.2	267	1	-31	-468	-31	468	mono-exon	FALSE	NA	NA	NA	NA	NA	441	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGAGTTCTCAGAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	35103819	35103053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35103100_35103800
ES_00027338	chr18	-	204	2	Antisense	novelGene_ENSMUSG00000037815.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1650	junction_1	0	66	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAATAAATAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	35322706	35304741	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_-_35304849_35322609
ES_00027340	chr18	-	244	2	Intergenic	novelGene_1961	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTGTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	35772909	35766567	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_35766760_35772857
ES_00027342	chr18	-	712	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	6	-16	6	16	multi-exon	TRUE	canonical	3	154	junction_2	20.7980768341691	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTACCTTCTCTGTCCTG	NA	False	NA	9	True	AATAAA	-42	NA	35795233	35789725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
ES_00027344	chr18	-	710	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	13.2748718344933	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTTTTATCCCATTT	NA	False	NA	-1	True	NA	NA	NA	35795239	35793068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
ES_00027348	chr18	-	1052	9	FSM	ENSMUSG00000073599.11	ENSMUST00000133064.8	1055	9	-9	12	-9	-10	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCCTGGAATCCAATTT	NA	False	NA	NA	False	ATTAAA	-8	NA	35855418	35846150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35855296
ES_00027349	chr18	-	2293	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	1	5	1	-5	multi-exon	FALSE	canonical	2	5	junction_4	3.35638289270592	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAACTGCCTTGGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	35873606	35866738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
ES_00027350	chr18	-	1109	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	0	0	0	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ES_00027351	chr18	-	1022	3	FSM	ENSMUSG00000024346.7	ENSMUST00000237792.2	1024	3	0	2	0	-2	multi-exon	FALSE	canonical	3	64	junction_1	1494	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCCTGTTGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36537514_36584132_36584300_36587505
ES_00027352	chr18	-	2376	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	0	-1	0	1	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCATTTTTGGTTT	NA	False	NA	-9	True	AATAAA	-23	NA	36648858	36637978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
ES_00027355	chr18	-	1869	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	0	110	0	-110	multi-exon	FALSE	canonical	3	1172	junction_4	156.810992918226	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCAACAACTAGATTTC	NA	False	NA	NA	False	NA	NA	NA	36803868	36799843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
ES_00027357	chr18	-	1307	4	FSM	ENSMUSG00000006050.13	ENSMUST00000236330.2	760	4	0	-547	0	-21	multi-exon	FALSE	canonical	3	29	junction_3	696.127542592272	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAGAAAGATTTATGTTT	NA	False	NA	NA	False	NA	NA	NA	36803343	36799754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803300
ES_00027358	chr18	-	1299	4	FSM	ENSMUSG00000006050.13	ENSMUST00000173202.3	1299	4	0	0	0	0	multi-exon	FALSE	canonical	3	1470	junction_2	40.4227658628155	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGGAAGTGGGTAGGAA	NA	False	NA	-35	True	NA	NA	NA	36803661	36800324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056
ES_00027360	chr18	-	2259	12	FSM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	0	-1	0	0	multi-exon	FALSE	canonical	3	26	junction_10	13.4925752462923	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812369	36804206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ES_00027361	chr18	-	2063	10	NIC	ENSMUSG00000117679.2	novel	2067	13	NA	NA	8	0	intron_retention	FALSE	canonical	3	5	junction_9	22.3744784062247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812411	36804206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810049_36810162_36810310_36810497_36810559_36812049
ES_00027362	chr18	-	2067	13	FSM	ENSMUSG00000117679.2	ENSMUST00000001415.9	2067	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	18.7888486431003	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812419	36804206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36809676_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ES_00027363	chr18	-	2100	12	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	38	-3	intron_retention	FALSE	canonical	2	4	junction_3	18.6569730832228	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTAGTGATGAGTATAT	NA	False	NA	-6	True	AATAAA	-15	NA	36812086	36804210	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_36804729_36808002_36808195_36808333_36808578_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ES_00027366	chr18	-	1453	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	0	-2	0	0	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGTCTGCTTGGTATAC	NA	False	NA	-6	True	ATTAAA	-16	NA	36899251	36896723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
ES_00027368	chr18	-	3406	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	-104	0	104	multi-exon	FALSE	canonical	3	1260	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTATGAGCCACCATGT	NA	False	NA	NA	False	NA	NA	NA	37777257	37773439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_37776586_37776997
ES_00027369	chr18	-	1689	1	FSM	ENSMUSG00000102827.2	ENSMUST00000193029.2	1420	1	51	-320	51	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATCTTCCCAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	37787174	37785485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_37785500_37787200
ES_00027373	chr18	-	5664	28	NNC	ENSMUSG00000024456.17	novel	5741	29	NA	NA	-16	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	21.3026399569584	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTCCTTTGTAAAATTC	NA	False	NA	-12	True	AATAAA	-23	NA	38068492	37976645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986761_37987531_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993567_38022267_38022277_38022750_38022866_38023529_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
ES_00027376	chr18	-	1040	7	FSM	ENSMUSG00000024454.17	ENSMUST00000153945.3	1040	7	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_2	49.5244047583276	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGACAGGTCTCTGGAAC	NA	False	NA	NA	False	NA	NA	NA	38077044	38070462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730
ES_00027382	chr18	-	1929	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ES_00027383	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ES_00027385	chr18	-	303	2	FSM	ENSMUSG00000052102.16	ENSMUST00000129062.2	303	2	0	0	0	0	multi-exon	FALSE	canonical	3	1328	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGGGCAGGAGAACATGC	NA	False	NA	NA	False	NA	NA	NA	38468131	38466149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_38466390_38468068
ES_00027388	chr18	-	1050	1	FSM	ENSMUSG00000118140.2	ENSMUST00000235767.2	1098	1	-59	107	-59	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCGGCCTTCTGCCAAC	NA	False	NA	NA	False	NA	NA	NA	38493650	38492600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_38492600_38493600
ES_00027389	chr18	-	6703	9	NIC	ENSMUSG00000024431.16	novel	6436	9	NA	NA	-16	-10	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	16.8221394299298	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACTCCCAACATGTTTT	NA	False	NA	-23	True	AATAAA	-20	NA	39622915	39543609	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39622529
ES_00027396	chr18	-	4715	7	NNC	ENSMUSG00000024487.6	novel	3328	6	NA	NA	0	1507	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.421824690167	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTGAATGCTTGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	40352391	40335441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_40337981_40338009_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
ES_00027399	chr18	-	1421	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	25	-578	0	578	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGCGTGAAGAGTACAGG	NA	False	NA	NA	False	NA	NA	NA	42084282	42008086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ES_00027401	chr18	-	3885	33	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	3594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	457.619844275792	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTTAGGCACTCATATC	NA	False	NA	NA	False	NA	NA	NA	42395183	42331768	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_42331801_42335413_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ES_00027402	chr18	-	3935	33	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	31	3594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	457.619844275792	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTTAGGCACTCATATC	NA	False	NA	NA	False	NA	NA	NA	42395228	42331768	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_42331802_42335409_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ES_00027403	chr18	-	3996	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	0	-16	0	16	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGAAGTGTCAGGATGC	NA	False	NA	57	True	AATAAA	-33	NA	42395259	42335346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ES_00027410	chr18	-	2379	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	43610861	43608482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_43608500_43610900
ES_00027412	chr18	-	218	1	FSM	ENSMUSG00000117929.2	ENSMUST00000237335.2	973	1	-63	818	-63	-818	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAATGGCTGCCAGA	NA	False	NA	NA	False	AATAAA	-4	NA	45204424	45204206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_45204200_45204400
ES_00027413	chr18	-	459	2	Intergenic	novelGene_1987	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACCATGGTGTGTCCTT	NA	False	NA	-4	True	AATAAA	-23	NA	45692415	45691129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_45691359_45692185
ES_00027414	chr18	-	7331	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	153	-7	-10	7	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGAAAATCCAGTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46413907	46368410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
ES_00027422	chr18	-	1348	3	FSM	ENSMUSG00000033184.15	ENSMUST00000151189.2	1348	3	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_1	23	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATTAACTGTAGCC	NA	False	NA	NA	False	AATAAA	-21	NA	46730602	46721098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46721756_46726315_46726562_46730157
ES_00027423	chr18	-	1588	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	0	7	0	4	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCTTTTTGATGCACA	2577	False	NA	1	True	AATAAA	-23	NA	46861462	46846266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ES_00027424	chr18	-	4647	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	118	0	-118	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTAGACTGTAAACCATC	NA	False	NA	NA	False	NA	NA	NA	46874646	46863328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ES_00027428	chr18	-	3149	6	FSM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	0	-4	0	4	multi-exon	FALSE	canonical	3	168	junction_3	20.6145579627602	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGTTTGTTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	49888668	49829207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_49831568_49833325_49833455_49856688_49856882_49857179_49857275_49861435_49861527_49888387
ES_00027429	chr18	-	1484	5	FSM	ENSMUSG00000024505.17	ENSMUST00000237137.2	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	81.4996165635152	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGTGTTCACTGAGCAA	NA	False	NA	-114	True	NA	NA	NA	49888634	49830645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_49831568_49833325_49833455_49857179_49857275_49861435_49861527_49888387
ES_00027431	chr18	-	416	1	FSM	ENSMUSG00000117714.2	ENSMUST00000238008.2	267	1	-1	-148	-1	148	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCTTGTGAAATGCAAC	NA	False	NA	NA	False	AATAAA	-24	NA	50342212	50341796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_50341800_50342200
ES_00027435	chr18	-	1357	6	NNC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	76	82985	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.025675292837	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAACAAAGAAAAGGTGGA	NA	False	NA	NA	False	NA	NA	NA	53551111	53456418	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_53456449_53539403_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
ES_00027438	chr18	-	4565	21	FSM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	-16	5	0	-5	multi-exon	FALSE	canonical	1	72	junction_13	46.6927189184781	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTTGTGTGGTCGGTC	NA	False	NA	-6	True	AATAAA	-19	NA	53877635	53814799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
ES_00027439	chr18	-	3060	20	FSM	ENSMUSG00000048799.9	ENSMUST00000237062.2	3261	20	0	201	0	-201	multi-exon	FALSE	canonical	1	72	junction_12	46.0364181985742	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGCATATAAATCATTTAAA	NA	False	NA	NA	False	AAAAAG	-8	NA	53877680	53818767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
ES_00027441	chr18	-	4131	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTTTTTTCTCTGGTT	2854	False	NA	NA	False	ATTAAA	-14	NA	56706023	56657793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
ES_00027442	chr18	-	1914	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
ES_00027445	chr18	-	2405	5	FSM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	0	-5	0	5	multi-exon	FALSE	canonical	3	74	junction_4	15.0228991875736	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTGGTAGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	57108440	57088899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108405
ES_00027446	chr18	-	2477	5	NIC	ENSMUSG00000024592.16	novel	2400	5	NA	NA	0	53	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	31.2329953734828	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGCAGAGCCTCGTGGT	NA	False	NA	NA	False	NA	NA	NA	57108440	57088851	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108381
ES_00027447	chr18	-	336	3	FSM	ENSMUSG00000024598.10	ENSMUST00000235281.2	681	3	54	291	54	-291	multi-exon	FALSE	canonical	2	4	junction_1	0.5	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTGAACACATGACTAT	NA	False	NA	NA	False	NA	NA	NA	58168996	58160888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_58161015_58168344_58168477_58168918
ES_00027448	chr18	-	220	1	FSM	ENSMUSG00000118327.2	ENSMUST00000235423.2	243	1	24	-1	24	1	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGCTATTAAGAGATGCAA	NA	False	NA	NA	False	NA	NA	NA	59907519	59907299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_59907300_59907500
ES_00027449	chr18	-	1619	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	365	6	-46	-6	multi-exon	FALSE	canonical	3	18	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAACTGTGTTTTGTTTG	NA	False	NA	-4	True	GATAAA	-9	NA	60634694	60607268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_60608658_60634464
ES_00027450	chr18	-	7853	15	NIC	ENSMUSG00000054008.10	novel	6478	15	NA	NA	50	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_14	10.0957153975216	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGGGTCTTGTTCTTGT	NA	False	NA	-7	True	AATAAA	-18	NA	60881438	60817565	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443_60833573_60835844_60836031_60836808_60836964_60838147_60838236_60840672_60841168_60845794_60846705_60881382
ES_00027451	chr18	-	8351	15	FSM	ENSMUSG00000054008.10	ENSMUST00000237783.2	6478	15	-404	-1469	-404	0	multi-exon	FALSE	canonical	2	17	junction_9	9.29367790380062	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGGGTCTTGTTCTTGT	NA	False	NA	-7	True	AATAAA	-18	NA	60882126	60817565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443_60833573_60835844_60836031_60836808_60836964_60838147_60838236_60840672_60841168_60845794_60846705_60881572
ES_00027452	chr18	-	4614	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	0	-19	0	19	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGACTCGGACTGTTAC	NA	False	NA	1	True	AATAAA	-36	NA	60982001	60946807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
ES_00027453	chr18	-	4548	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	0	-19	0	19	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	1488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGACTCGGACTGTTAC	NA	False	NA	1	True	AATAAA	-36	NA	60982043	60946807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
ES_00027457	chr18	-	3372	14	FSM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	0	-6	0	6	multi-exon	FALSE	canonical	2	6	junction_10	5.15671561910596	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACTCTGCTACAAAAGG	NA	False	NA	1	True	AATAAA	-25	NA	61147294	61128445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136663_61137460_61137596_61138783_61138923_61140446_61140682_61140787_61140920_61142493_61142678_61147048
ES_00027458	chr18	-	732	2	ISM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	13564	957	13548	-957	3prime_fragment	FALSE	canonical	3	23	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTTCCCAAGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	61133730	61129408	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_61129904_61133493
ES_00027459	chr18	-	1757	3	FSM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	0	-7	0	7	multi-exon	FALSE	canonical	3	995	junction_1	57.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTTCTCGTGATTGTG	7754	False	NA	2	True	ATTAAA	-29	NA	61169271	61151926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61153014_61153445_61153592_61168747
ES_00027461	chr18	-	5152	20	FSM	ENSMUSG00000024622.9	ENSMUST00000235480.2	5131	20	0	-21	0	6	multi-exon	FALSE	canonical	3	101	junction_18	18.508813502905	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTCAATGCTGTGTCC	5877	False	NA	1	True	AATAAA	-35	NA	61310069	61264342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
ES_00027462	chr18	-	5109	21	FSM	ENSMUSG00000024622.9	ENSMUST00000091884.6	5103	21	0	-6	0	6	multi-exon	FALSE	canonical	3	70	junction_14	23.3398264775041	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTCAATGCTGTGTCC	5824	False	NA	1	True	AATAAA	-35	NA	61310122	61264342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290591_61290686_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
ES_00027465	chr18	-	972	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	-7	0	7	mono-exon	FALSE	NA	NA	NA	NA	NA	2475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAGAGATGGCTCAGCA	7423	False	NA	NA	False	NA	NA	NA	61393043	61392071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61392100_61393000
ES_00027468	chr18	-	4042	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	-4	0	4	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGTTCTCTCATGATTGC	NA	False	NA	2	True	ATTAAA	-18	NA	61859394	61845490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ES_00027470	chr18	-	1703	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49250	1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCAGAGGGTAGCTGGCT	NA	False	NA	2	True	AATAAA	-22	NA	61870432	61863330	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
ES_00027471	chr18	-	2246	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	-51	-51	-51	51	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCCACTGGAAACCACAG	NA	False	NA	NA	False	NA	NA	NA	62313081	62310835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_62310800_62313100
ES_00027472	chr18	-	4373	22	NIC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-22	94	combination_of_known_junctions	FALSE	canonical	3	48	junction_8	62.0483682299543	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	46	True	AATAAA	-17	NA	62681788	62637131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648619_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ES_00027473	chr18	-	4594	23	NIC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-138	94	combination_of_known_junctions	FALSE	canonical	1	2	junction_22	88.4667024253562	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	46	True	AATAAA	-17	NA	62681904	62637131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62677889_62677998_62681682
ES_00027475	chr18	-	4507	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	-159	-94	-159	94	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	46	True	AATAAA	-17	NA	62681925	62637131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ES_00027477	chr18	-	2951	10	FSM	ENSMUSG00000042211.8	ENSMUST00000236904.2	2951	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	80.8331615118449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGATGTTTTATGAT	NA	False	NA	NA	False	AATAAA	-19	NA	62663842	62646941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_62648619_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759
ES_00027479	chr18	-	793	2	FSM	ENSMUSG00000041789.8	ENSMUST00000048109.7	809	2	12	4	12	-4	multi-exon	FALSE	canonical	3	9	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACATGTTGCACTAGAAG	NA	False	NA	NA	False	AATAAA	-14	NA	62889406	62887864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_62888246_62888994
ES_00027481	chr18	-	4349	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	0	-6	0	6	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTGTTTATTTATTTG	NA	False	NA	NA	False	AATAAA	-22	NA	63825508	63794158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ES_00027483	chr18	-	1005	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGGAAAAATGAAGAAGAA	NA	False	NA	NA	False	AAGAAA	-22	NA	64582760	64581755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64581800_64582800
ES_00027487	chr18	-	2726	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	19	0	19	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	1154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649704	64632717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ES_00027488	chr18	-	2687	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	0	0	0	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACACTTTGCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	64649679	64632728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ES_00027489	chr18	-	2273	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	0	-5	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649508	64633283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ES_00027490	chr18	-	2103	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237369.2	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	1341.18505510642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649626	64633283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644970_64645054_64645121_64648396_64648480_64649486
ES_00027494	chr18	-	716	1	FSM	ENSMUSG00000118133.2	ENSMUST00000236712.2	716	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGCCCTTTTTACCGTG	NA	False	NA	NA	False	NA	NA	NA	64745511	64744795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64744800_64745500
ES_00027495	chr18	-	217	2	NNC	ENSMUSG00000032845.17	novel	792	4	NA	NA	-13771	10666	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCTCAGTTCCCCTAGGA	9137	False	NA	NA	False	NA	NA	NA	65496376	65485453	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_65485478_65496183
ES_00027498	chr18	-	3582	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	0	-1	0	1	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCTGTATCCTGCTGT	NA	False	NA	-2	True	AATAAA	-35	NA	66135710	66113807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ES_00027499	chr18	-	4676	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTTTTCCTCCAT	NA	False	NA	-22	True	AATAAA	-15	NA	66135710	66113827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ES_00027503	chr18	-	2494	11	FSM	ENSMUSG00000062526.5	ENSMUST00000073054.5	2494	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	12.1016527796826	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378901	67358113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
ES_00027505	chr18	-	1982	11	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	64	-282	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	11.9348229982686	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCTTCTCTGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	67378674	67358395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360947_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
ES_00027506	chr18	-	3102	17	FSM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	0	-8	0	8	multi-exon	FALSE	canonical	3	685	junction_14	36.0532917186489	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTTGTGCTTATGTT	NA	False	NA	6	True	AATAAA	-39	NA	67582242	67537825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
ES_00027507	chr18	-	4664	1	FSM	ENSMUSG00000024527.11	ENSMUST00000236810.2	4664	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAACTTTCCATTGAA	NA	False	NA	NA	False	NA	NA	NA	67582179	67577515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67577500_67582200
ES_00027508	chr18	-	5458	16	NIC	ENSMUSG00000024533.18	novel	5405	17	NA	NA	-92	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_15	10.4234777732237	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTTGAATTCCTAT	NA	False	NA	NA	False	AATAAA	-17	NA	67743952	67621278	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_67624620_67628209_67628347_67628432_67628461_67629631_67629703_67630246_67630385_67636500_67636644_67638720_67638815_67639623_67639797_67652360_67652491_67652873_67652961_67661933_67662099_67663476_67663555_67678684_67678811_67685643_67685878_67720894_67720930_67743474
ES_00027510	chr18	-	3576	12	FSM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	9.14800253679584	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTGGATGTCTTGA	830	False	NA	-4	True	AATAAA	-18	NA	67774406	67750869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999_67758167_67759589_67759779_67762888_67763018_67766520_67766619_67767824_67768011_67770208_67770434_67771335_67771412_67773077_67773234_67774181
ES_00027511	chr18	-	1583	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	-15	0	14	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATGTGTGTGTTAT	NA	False	NA	0	True	ATTAAA	-33	NA	67857658	67798566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ES_00027512	chr18	-	2667	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTCCCTTACCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	67857665	67804281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ES_00027513	chr18	-	205	2	Antisense	novelGene_ENSMUSG00000024542.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	89	junction_1	0	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGAGATGGTAGGATCT	NA	False	NA	NA	False	NA	NA	NA	67973803	67958137	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_-_67958291_67973751
ES_00027514	chr18	-	9632	4	FSM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	19	0	19	0	multi-exon	FALSE	canonical	3	166	junction_3	16.3367343397905	2313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTGTGGATACTGTTG	NA	False	NA	NA	False	AATAAA	-14	NA	68433385	68393257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_68402024_68405633_68405746_68408832_68409346_68433144
ES_00027517	chr18	-	3320	6	FSM	ENSMUSG00000044906.7	ENSMUST00000212683.2	3317	6	0	-3	0	2	multi-exon	FALSE	canonical	3	13	junction_1	79.1722173492697	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTACGTCTCCTTT	NA	False	NA	0	True	AATAAA	-20	NA	70605580	70585280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_70586460_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
ES_00027518	chr18	-	3075	8	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	81.2868440795198	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATATGTTGTTACGTCT	NA	False	NA	-5	True	AATAAA	-15	NA	70605542	70585285	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_70586460_70589544_70589616_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
ES_00027522	chr18	-	4393	4	FSM	ENSMUSG00000044906.7	ENSMUST00000237800.2	4393	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_3	21.483844059096	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAGGTAAATTACTGA	NA	False	NA	NA	False	AATAAA	-21	NA	70605575	70598045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_70601589_70602519_70602849_70604743_70605051_70605361
ES_00027524	chr18	-	2795	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	134	-338	-32	334	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGCCACAGTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	70663371	70641416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ES_00027525	chr18	-	3511	10	FSM	ENSMUSG00000038425.19	ENSMUST00000160713.2	3504	10	0	-7	0	0	multi-exon	FALSE	canonical	3	11	junction_6	123.922118114664	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCACTGTAAGTTGTG	NA	False	NA	-12	True	AATAAA	-23	NA	70663339	70641750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70657801_70658600_70659627_70659793_70661772_70661899_70662821
ES_00027526	chr18	-	2871	10	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-59	-1	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	108.067651422387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCTCACTGTAAGTTGT	NA	False	NA	-13	True	AATAAA	-22	NA	70663750	70641751	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70661772_70661899_70663258
ES_00027527	chr18	-	2292	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCACTGTAAGTTGTG	NA	False	NA	-12	True	AATAAA	-23	NA	70663328	70641750	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
ES_00027528	chr18	-	2792	10	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-32	334	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_9	93.0357690406634	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGCCACAGTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	70663371	70641416	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661896_70663258
ES_00027529	chr18	-	1003	1	FSM	ENSMUSG00000117810.2	ENSMUST00000236578.2	889	1	-48	-66	-48	66	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGGTTGGCTTGCAAAAC	NA	False	NA	NA	False	AATAAA	-25	NA	70781156	70780153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_70780200_70781200
ES_00027532	chr18	-	2638	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGCCTTCTTTTGTA	371	False	NA	NA	False	AATAAA	-16	NA	73948509	73902973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ES_00027533	chr18	-	2177	4	FSM	ENSMUSG00000024556.5	ENSMUST00000237619.2	715	4	-331	-1131	-331	-81	multi-exon	FALSE	canonical	3	527	junction_1	22.8375908439475	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCAGTGCTTGGAAAT	29	False	NA	NA	False	NA	NA	NA	73948851	73929601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_73931050_73934799_73934934_73938122_73938241_73948374
ES_00027534	chr18	-	3366	1	FSM	ENSMUSG00000024556.5	ENSMUST00000235595.2	3366	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCGTTTCTGATCTCC	364	False	NA	NA	False	NA	NA	NA	73948516	73945150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_73945200_73948500
ES_00027536	chr18	-	4815	6	NIC	ENSMUSG00000024558.13	novel	4594	6	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	6.68131723539603	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGTCAGGAATTGTCACG	9395	False	NA	NA	False	AATAAA	-18	NA	74198423	74061557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961_74104348_74198111
ES_00027537	chr18	-	2635	7	FSM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	0	-5	0	5	multi-exon	FALSE	canonical	3	11	junction_6	177.375699826354	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATGGTGGCTTCCTGCCT	6765	False	NA	-3	True	NA	NA	NA	74340850	74328364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340600
ES_00027539	chr18	-	466	1	FSM	ENSMUSG00000095419.2	ENSMUST00000122178.2	408	1	-27	-31	-27	31	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCAGAGTGAATATGCTC	NA	False	NA	NA	False	NA	NA	NA	74437029	74436563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_74436600_74437000
ES_00027540	chr18	-	358	1	FSM	ENSMUSG00000094153.3	ENSMUST00000179328.3	622	1	-18	282	-18	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	704	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGCAGCCTGGCTTATCC	NA	False	NA	NA	False	NA	NA	NA	75315903	75315545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_75315500_75315900
ES_00027541	chr18	-	349	5	FSM	ENSMUSG00000025420.14	ENSMUST00000138336.2	668	5	319	0	319	0	multi-exon	FALSE	canonical	2	4	junction_4	3.53553390593274	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTTGCTGGCCAAAGCG	NA	False	NA	NA	False	NA	NA	NA	77095579	77090236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480
ES_00027542	chr18	-	1600	6	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13991	4	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTTTTTTTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	77120948	77097732	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
ES_00027543	chr18	-	7551	8	FSM	ENSMUSG00000025427.16	ENSMUST00000026494.14	7300	8	-251	0	-226	0	multi-exon	FALSE	canonical	3	20	junction_2	6.65168384389875	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGGAGTGCAGAGTGTT	NA	False	NA	0	True	AATAAA	-24	NA	77653083	77543805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_77550146_77550579_77550687_77554372_77554469_77554630_77554736_77555936_77556067_77563169_77563281_77571844_77572161_77652737
ES_00027544	chr18	-	5069	4	NIC	ENSMUSG00000047466.11	novel	5125	5	NA	NA	1	63	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	18.3726850393609	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTCCCAAGCTATCC	NA	False	NA	55	True	NA	NA	NA	77801682	77719129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_77723025_77730763_77730891_77761595_77762381_77801420
ES_00027545	chr18	-	5257	5	FSM	ENSMUSG00000047466.11	ENSMUST00000074653.6	5125	5	-69	-63	-19	63	multi-exon	FALSE	canonical	3	42	junction_2	68.2948570538075	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTCCCAAGCTATCC	NA	False	NA	55	True	NA	NA	NA	77801702	77719129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77801420
ES_00027546	chr18	-	5159	5	FSM	ENSMUSG00000047466.11	ENSMUST00000237203.2	1606	5	0	-3553	0	63	multi-exon	FALSE	canonical	3	34	junction_4	65.6291665343999	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTCCCAAGCTATCC	NA	False	NA	55	True	NA	NA	NA	77802186	77719129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77802002
ES_00027547	chr18	-	2672	2	FSM	ENSMUSG00000047466.11	ENSMUST00000235641.2	2571	2	-101	0	-101	0	multi-exon	FALSE	canonical	3	170	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCCCATTGTAGAGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	77801784	77760072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_77762381_77801420
ES_00027549	chr18	-	1299	10	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	5514	at_least_one_novel_splicesite	TRUE	canonical	3	1190	junction_7	186.090247586792	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAGCTTTCGATCAAAC	NA	False	NA	NA	False	NA	NA	NA	77855486	77839752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_77839897_77845121_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ES_00027551	chr18	-	5484	4	NNC	ENSMUSG00000053950.11	novel	5012	4	NA	NA	-232	236	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	66.5131565932636	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACGAGAGCATCATGGA	5704	False	NA	NA	False	NA	NA	NA	80194929	80169289	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_80174210_80180698_80180789_80185863_80185985_80194576
ES_00027552	chr18	-	5012	4	FSM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	18.0800688297608	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCTTAAGTCAAGCAGG	5936	False	NA	87	True	AATAAA	-29	NA	80194697	80169525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80174210_80180698_80180789_80185863_80185985_80194580
ES_00027553	chr18	-	1377	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTGTGTATACGCAC	NA	False	NA	-3	True	AATAAA	-20	NA	80243873	80235479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
ES_00027554	chr18	-	1156	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	-45	-7	-45	7	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGTGTATGGAGGTTT	NA	False	NA	NA	False	AATACA	-21	NA	80280093	80272965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
ES_00027556	chr18	-	5298	30	FSM	ENSMUSG00000024566.11	ENSMUST00000091790.5	5357	30	0	59	0	-59	multi-exon	FALSE	canonical	3	35	junction_1	27.0288523341592	2130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTTCTGCAGGCCT	9821	False	NA	NA	False	NA	NA	NA	80977198	80777414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80779365_80780026_80780060_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ES_00027557	chr18	-	5150	29	FSM	ENSMUSG00000024566.11	ENSMUST00000225980.2	5150	29	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_24	14.8266772117982	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTCAGTCCTACAAGGGA	9746	False	NA	NA	False	AATAAA	-17	NA	80977273	80777604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80779365_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ES_00027560	chr18	-	2041	16	FSM	ENSMUSG00000024566.11	ENSMUST00000225205.2	3038	16	0	997	0	825	multi-exon	FALSE	canonical	3	12	junction_6	30.3583047396699	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCACGTTATTCTCAGC	9772	False	NA	NA	False	NA	NA	NA	80977247	80808237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ES_00027561	chr18	-	7019	4	FSM	ENSMUSG00000024565.11	ENSMUST00000057950.9	7079	4	0	60	0	-60	multi-exon	FALSE	canonical	3	26	junction_2	9.39266853573691	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTATAAATCTTAACTTTA	NA	False	NA	NA	False	TTTAAA	-25	NA	81029986	81009650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_81013120_81014395_81014737_81014952_81017845_81029669
ES_00027562	chr18	-	7254	3	FSM	ENSMUSG00000024565.11	ENSMUST00000238808.2	4214	3	-537	-2503	-302	-343	multi-exon	FALSE	canonical	3	38	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAGAGGATGTGATAGA	NA	False	NA	NA	False	NA	NA	NA	81030288	81009933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_81013120_81014395_81017845_81029669
ES_00027565	chr18	-	8918	26	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	23989	-3562	14823	0	3prime_fragment	TRUE	canonical	1	4	junction_23	7.62102355330306	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCGTATATTTACTTCTT	6033	False	NA	4	True	AATAAA	-25	NA	82686870	82611717	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278_82646492_82648095_82648248_82648711_82648816_82651102_82651255_82651811_82651914_82654857_82655115_82657444_82657706_82658224_82658367_82662181_82662386_82664093_82664367_82675073_82675303_82676127_82676332_82682962_82683107_82686696
ES_00027568	chr18	-	4895	2	FSM	ENSMUSG00000046982.12	ENSMUST00000060303.10	5656	2	638	123	638	-123	multi-exon	FALSE	canonical	1	2	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAATTATACATTTTGAT	NA	False	NA	NA	False	NA	NA	NA	84103891	84029874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_84034367_84103488
ES_00027570	chr18	-	2156	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	0	-4	0	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGTGGTCTGACTTTCT	NA	False	NA	2	True	AATAAA	-25	NA	84700184	84685589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
ES_00027572	chr18	-	1068	1	FSM	ENSMUSG00000024644.18	ENSMUST00000235149.2	1669	1	62	539	62	-539	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGCACCCACTGTAAC	NA	False	NA	NA	False	NA	NA	NA	84703690	84702622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_84702600_84703700
ES_00027573	chr18	-	2451	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	19	-52	0	52	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGTAAACTCAGGACAAGA	NA	False	NA	NA	False	NA	NA	NA	84969630	84964263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
ES_00027577	chr18	-	544	1	FSM	ENSMUSG00000118171.2	ENSMUST00000235287.2	591	1	48	-1	48	1	mono-exon	FALSE	NA	NA	NA	NA	NA	762	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCATGGATTCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	87870116	87869572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_87869600_87870100
ES_00027578	chr18	-	6038	3	FSM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	0	-2	0	2	multi-exon	FALSE	canonical	3	70	junction_1	76	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTGTCATCAGTAACAT	NA	False	NA	0	True	AATAAA	-19	NA	88912446	88883290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_88889043_88905332_88905458_88912285
ES_00027579	chr18	-	2811	4	FSM	ENSMUSG00000056153.16	ENSMUST00000125362.8	2814	4	3	0	3	0	multi-exon	FALSE	canonical	3	64	junction_2	64.5652125115891	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAAATTGTTGCCTTTT	NA	False	NA	-5	True	ATTAAA	-25	NA	88912473	88886618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_88889043_88905115_88905190_88905332_88905458_88912285
ES_00027582	chr18	+	222	1	Intergenic	novelGene_1888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGTTTTCACAAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	4058595	4058817	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_4058600_4058800
ES_00027583	chr18	+	229	1	Intergenic	novelGene_1892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	4532873	4533102	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_4532900_4533100
ES_00027584	chr18	+	285	1	Intergenic	novelGene_1893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTAGCCATGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	5538197	5538482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_5538200_5538500
ES_00027586	chr18	+	318	1	Intergenic	novelGene_1896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCTGATGCTGCCCAAC	NA	False	NA	NA	False	NA	NA	NA	6042084	6042402	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_6042100_6042400
ES_00027587	chr18	+	370	1	Intergenic	novelGene_1897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTAGGTTGACTTAGGA	NA	False	NA	NA	False	NA	NA	NA	6760084	6760454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_6760100_6760500
ES_00027588	chr18	+	242	1	Intergenic	novelGene_1898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTGCAACATAAGCATTG	NA	False	NA	NA	False	CATAAA	-4	NA	7846497	7846739	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_7846500_7846700
ES_00027589	chr18	+	219	1	Intergenic	novelGene_1899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	774	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATCTTGTAAATAGATTT	NA	False	NA	NA	False	NA	NA	NA	7847208	7847427	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_7847200_7847400
ES_00027590	chr18	+	759	1	Intergenic	novelGene_1903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGCCTAGAGGGAAGGT	NA	False	NA	NA	False	NA	NA	NA	8145698	8146457	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8145700_8146500
ES_00027591	chr18	+	237	1	Intergenic	novelGene_1905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGATATCACATGCCTCA	NA	False	NA	NA	False	ATTAAA	-33	NA	8227058	8227295	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8227100_8227300
ES_00027592	chr18	+	223	1	Intergenic	novelGene_1907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACGTGTGGACAGGGGT	NA	False	NA	NA	False	NA	NA	NA	8416315	8416538	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8416300_8416500
ES_00027593	chr18	+	406	1	Intergenic	novelGene_1908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCTACAGCACTCAACTA	NA	False	NA	NA	False	NA	NA	NA	9468750	9469156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9468800_9469200
ES_00027594	chr18	+	662	1	Intergenic	novelGene_1910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGCTCCTCACTGCT	NA	False	NA	NA	False	NA	NA	NA	9470376	9471038	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9470400_9471000
ES_00027595	chr18	+	1616	1	Intergenic	novelGene_1917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTTCTTACATAATG	NA	False	NA	NA	False	NA	NA	NA	9890916	9892532	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9890900_9892500
ES_00027599	chr18	+	200	1	Intergenic	novelGene_1921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGAATTCTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	12296617	12296817	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_12296600_12296800
ES_00027600	chr18	+	208	1	Intergenic	novelGene_1923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAACCCA	NA	False	NA	NA	False	NA	NA	NA	18081410	18081618	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_18081400_18081600
ES_00027601	chr18	+	372	1	Intergenic	novelGene_1925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCGCGCTGTCCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	18962812	18963184	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_18962800_18963200
ES_00027602	chr18	+	1303	1	Intergenic	novelGene_1926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGCTGCCTCTTACAAG	NA	False	NA	NA	False	NA	NA	NA	18963618	18964921	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_18963600_18964900
ES_00027603	chr18	+	369	1	Intergenic	novelGene_1927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTGCTTCAATACAAAA	NA	False	NA	NA	False	NA	NA	NA	18966065	18966434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_18966100_18966400
ES_00027604	chr18	+	253	1	Intergenic	novelGene_1931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACCGGGTAAGAGTCAC	NA	False	NA	NA	False	NA	NA	NA	20909935	20910188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_20909900_20910200
ES_00027605	chr18	+	347	1	Intergenic	novelGene_1935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTCTTCTCTGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	24119266	24119613	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_24119300_24119600
ES_00027606	chr18	+	258	1	Intergenic	novelGene_1936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGACGTAAGCACATACA	NA	False	NA	NA	False	NA	NA	NA	24134608	24134866	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_24134600_24134900
ES_00027607	chr18	+	224	1	Intergenic	novelGene_1938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAGAAACAAGCTCAT	NA	False	NA	NA	False	AATAAA	-38	NA	28321880	28322104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_28321900_28322100
ES_00027608	chr18	+	272	1	Intergenic	novelGene_1939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGGTCTTGATACAACTT	NA	False	NA	NA	False	NA	NA	NA	30818369	30818641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_30818400_30818600
ES_00027610	chr18	+	219	1	Intergenic	novelGene_1944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAATTAAGTTGTAAAATC	NA	False	NA	NA	False	NA	NA	NA	34195048	34195267	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34195000_34195300
ES_00027611	chr18	+	318	1	Intergenic	novelGene_1945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCCTGTCTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34205228	34205546	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34205200_34205500
ES_00027618	chr18	+	203	1	Intergenic	novelGene_1971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGTATGTGTTCACAT	NA	False	NA	NA	False	NA	NA	NA	36873145	36873348	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_36873100_36873300
ES_00027619	chr18	+	206	1	Intergenic	novelGene_1974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGCATTTTTAAGTACAAA	NA	False	NA	NA	False	NA	NA	NA	38556136	38556342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_38556100_38556300
ES_00027620	chr18	+	212	1	Intergenic	novelGene_1975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTTCCCTCTTTGCCCT	NA	False	NA	NA	False	AAAAAG	-42	NA	39228765	39228977	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_39228800_39229000
ES_00027621	chr18	+	221	1	Intergenic	novelGene_1976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCTCTTTTTACATG	NA	False	NA	NA	False	NA	NA	NA	39947303	39947524	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_39947300_39947500
ES_00027622	chr18	+	218	1	Intergenic	novelGene_1977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	466	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCGTAAATCCCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	42440241	42440459	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_42440200_42440500
ES_00027625	chr18	+	885	1	Intergenic	novelGene_1979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTCAAAATGAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	43306592	43307477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_43306600_43307500
ES_00027626	chr18	+	245	1	Intergenic	novelGene_1981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGGTTTTTTGATCAA	NA	False	NA	NA	False	NA	NA	NA	44511633	44511878	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_44511600_44511900
ES_00027627	chr18	+	1975	1	Intergenic	novelGene_1982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAATTTACAATTGCTTA	NA	False	NA	NA	False	NA	NA	NA	44868845	44870820	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_44868800_44870800
ES_00027629	chr18	+	201	1	Intergenic	novelGene_1990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGGCATCCCAGATGTG	NA	False	NA	NA	False	NA	NA	NA	47461380	47461581	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_47461400_47461600
ES_00027631	chr18	+	219	1	Intergenic	novelGene_1992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCTATTATTTTTACAAC	5511	False	NA	NA	False	NA	NA	NA	53927610	53927829	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_53927600_53927800
ES_00027632	chr18	+	326	1	Intergenic	novelGene_1994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2014	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATATTCCATGCTCTTATA	NA	False	NA	NA	False	NA	NA	NA	54832124	54832450	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_54832100_54832400
ES_00027637	chr18	+	224	1	Intergenic	novelGene_2000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATGATTAATAATTAAAC	NA	False	NA	NA	False	NA	NA	NA	60612442	60612666	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_60612400_60612700
ES_00027638	chr18	+	208	1	Intergenic	novelGene_2001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGCATTTTCTTGACTG	7167	False	NA	NA	False	NA	NA	NA	61227643	61227851	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_61227600_61227900
ES_00027640	chr18	+	210	1	Intergenic	novelGene_2005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACATGCCTTTTAAAGT	1004	False	NA	NA	False	NA	NA	NA	65026997	65027207	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_65027000_65027200
ES_00027644	chr18	+	203	1	Intergenic	novelGene_2008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAAAAACATGAAATCATA	NA	False	NA	NA	False	NA	NA	NA	74299539	74299742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_74299500_74299700
ES_00027645	chr18	+	391	1	Intergenic	novelGene_2009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTTCCAGCTAACTAGAT	NA	False	NA	NA	False	NA	NA	NA	75314252	75314643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_75314300_75314600
ES_00027646	chr18	+	204	1	Intergenic	novelGene_2011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCACTTTAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	76989940	76990144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_76989900_76990100
ES_00027647	chr18	+	296	1	Intergenic	novelGene_2012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTATTCTTTTGCAGA	NA	False	NA	NA	False	NA	NA	NA	77811183	77811479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_77811200_77811500
ES_00027648	chr18	+	241	1	Intergenic	novelGene_2013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCATCTCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	77919470	77919711	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_77919500_77919700
ES_00027649	chr18	+	221	1	Intergenic	novelGene_2014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGACACTTTTTTAAAACGC	NA	False	NA	NA	False	NA	NA	NA	78374270	78374491	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_78374300_78374500
ES_00027651	chr18	+	267	1	Intergenic	novelGene_2016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAACTT	NA	False	NA	NA	False	AATAAA	-17	NA	79978978	79979245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_79979000_79979200
ES_00027652	chr18	+	1946	1	Intergenic	novelGene_2017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTCAACAGCGTCACCCA	NA	False	NA	NA	False	NA	NA	NA	80165886	80167832	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_80165900_80167800
ES_00027653	chr18	+	256	1	Intergenic	novelGene_2018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTTGCCCCTGGGACAG	NA	False	NA	NA	False	NA	NA	NA	80228572	80228828	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_80228600_80228800
ES_00027655	chr18	+	208	1	Intergenic	novelGene_2019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAGACCACAGCATGA	NA	False	NA	NA	False	NA	NA	NA	81046068	81046276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_81046100_81046300
ES_00027661	chr18	+	4183	3	Intergenic	novelGene_1883	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTCGTATTTATTTA	27	False	NA	NA	False	TTTAAA	-25	NA	3000120	3013990	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_3000266_3001024_3001087_3010014
ES_00027662	chr18	+	669	2	FSM	ENSMUSG00000097746.3	ENSMUST00000181558.3	1436	2	153	614	95	-614	multi-exon	FALSE	canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGATGTCCATGGCTGC	98	False	NA	NA	False	NA	NA	NA	3336832	3366249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3337179_3365926
ES_00027663	chr18	+	2799	21	FSM	ENSMUSG00000024231.16	ENSMUST00000080089.11	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	205.086591468092	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-19	True	NA	72	True	ATTAAA	-28	NA	3383224	3435385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414173_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ES_00027664	chr18	+	6799	1	FSM	ENSMUSG00000096528.2	ENSMUST00000179907.2	2686	1	11	-4124	11	4124	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCCATAAGTACTTCTC	NA	False	NA	NA	False	NA	NA	NA	3471640	3478439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_3471600_3478400
ES_00027666	chr18	+	6735	34	NIC	ENSMUSG00000024236.19	novel	7907	38	NA	NA	-41	-1	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	17.6671084720473	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGATCAGTTCACATT	NA	False	NA	13	True	AATAAA	-19	NA	4920498	5119290	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_4920875_5037107_5037166_5040147_5040240_5046588_5046647_5046763_5046916_5048884_5049495_5058124_5058160_5058712_5058775_5059229_5059370_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ES_00027669	chr18	+	354	5	FSM	ENSMUSG00000073639.7	ENSMUST00000234720.2	354	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	585.941336654106	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCCAGCTATTATAGAGG	7	True	NA	NA	False	NA	NA	NA	6765202	6783152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_6765333_6767643_6767717_6770053_6770110_6778494_6778557_6783119
ES_00027670	chr18	+	2205	13	FSM	ENSMUSG00000024283.16	ENSMUST00000171042.8	2205	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	207.122397388597	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATTGGGGGGGGGGGTT	-11	True	NA	NA	False	AAAAAG	-8	NA	7868831	7926505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917564_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ES_00027671	chr18	+	5854	1	FSM	ENSMUSG00000036904.7	ENSMUST00000041080.7	5974	1	3	117	3	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTACATGAAAAAAATGTT	3	True	NA	NA	False	NA	NA	NA	9212165	9218019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_9212200_9218000
ES_00027672	chr18	+	210	1	NIC	ENSMUSG00000117453.2	novel	1103	2	NA	NA	718	-378	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACACAGAGGAAGAGATTA	NA	False	NA	NA	False	AAAAAG	-2	NA	9909910	9910120	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_9909900_9910100
ES_00027673	chr18	+	1233	1	FSM	ENSMUSG00000092039.3	ENSMUST00000165917.3	832	1	-88	-313	-88	313	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTCCAGATAACAATAGTT	-6	True	NA	NA	False	NA	NA	NA	9916838	9918071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_9916800_9918100
ES_00027677	chr18	+	3305	19	NNC	ENSMUSG00000041238.17	novel	3209	19	NA	NA	0	126	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_8	47.134428192009	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTAGTCTATAATTTAT	3270	False	NA	11	True	NA	NA	NA	11790464	11876061	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851940_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ES_00027681	chr18	+	2297	19	FSM	ENSMUSG00000024410.16	ENSMUST00000127123.8	2297	19	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.871831952861	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301808	12323031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ES_00027683	chr18	+	7719	38	NNC	ENSMUSG00000024421.17	novel	5551	38	NA	NA	-256	1909	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	20.7911806329277	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGAGATCCTTAGGTCAT	NA	False	NA	NA	False	NA	NA	NA	12636999	12717979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_12637453_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ES_00027684	chr18	+	1048	8	FSM	ENSMUSG00000024424.16	ENSMUST00000234974.2	1070	8	22	0	-8	0	multi-exon	FALSE	canonical	1	3	junction_1	18.4833074167267	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGCTACTACGCATATC	NA	False	NA	NA	False	NA	NA	NA	12732974	12858074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828620_12830947_12831117_12853006_12853101_12857995
ES_00027685	chr18	+	1990	14	FSM	ENSMUSG00000024424.16	ENSMUST00000025294.9	1990	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.4427045935424	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACCTTGCAGGAGCGCCT	NA	False	NA	8	True	AATAAA	-22	NA	12776418	12870113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12776531_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
ES_00027686	chr18	+	955	1	FSM	ENSMUSG00000117494.2	ENSMUST00000234213.2	2858	1	-4	1907	-4	-1907	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACCTTGTTTTAGAAGG	3953	False	NA	NA	False	GATAAA	-7	NA	12995481	12996436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12995500_12996400
ES_00027687	chr18	+	492	1	FSM	ENSMUSG00000053740.9	ENSMUST00000066378.9	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGCTCCCCGCAACCAGC	NA	False	NA	NA	False	NA	NA	NA	14703203	14703695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_14703200_14703700
ES_00027689	chr18	+	629	2	Genic_Genomic	ENSMUSG00000058064.7	novel	534	1	NA	NA	-21	69522	multi-exon	FALSE	non_canonical	0	0	junction_1	0	748	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAACCACGTGATA	NA	False	NA	NA	False	NA	NA	NA	15965829	16035906	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr18_+_15966428_16035875
ES_00027690	chr18	+	770	1	FSM	ENSMUSG00000043223.8	ENSMUST00000155839.2	972	1	-15	217	-15	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGTCCCAGGTGTATG	NA	False	NA	NA	False	NA	NA	NA	16121409	16122179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_16121400_16122200
ES_00027691	chr18	+	808	2	Intergenic	novelGene_1930	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGCTCCACGTGGTTCA	NA	False	NA	NA	False	NA	NA	NA	20895474	20902185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_20895821_20901723
ES_00027692	chr18	+	218	2	Antisense	novelGene_ENSMUSG00000033382.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGGGTTTTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	20899585	20954373	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_+_20899612_20954181
ES_00027694	chr18	+	2531	8	NNC	ENSMUSG00000024277.15	novel	4026	7	NA	NA	0	22586	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	48.3110668861025	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAGAAAGAAAAG	NA	False	NA	NA	False	AAAAAG	-43	NA	23937076	24049504	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913_24025420_24049468
ES_00027697	chr18	+	1849	4	FSM	ENSMUSG00000024273.9	ENSMUST00000234559.2	1023	4	-45	-781	-44	640	multi-exon	FALSE	canonical	3	162	junction_1	19.3620476419435	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGCAACACACACAAAAAA	296	False	NA	NA	False	ATTAAA	-20	NA	24603862	24611495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24604142_24606006_24606207_24608581_24608782_24610325
ES_00027698	chr18	+	2213	8	FSM	ENSMUSG00000024271.9	ENSMUST00000234847.2	2527	8	-132	446	-108	-446	multi-exon	FALSE	canonical	3	667	junction_5	72.5089719993889	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATTTCTTAACATATTA	NA	False	NA	NA	False	NA	NA	NA	24736909	24750361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945
ES_00027699	chr18	+	703	2	FSM	ENSMUSG00000024271.9	ENSMUST00000234014.2	757	2	0	54	0	-54	multi-exon	FALSE	canonical	3	743	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCACTTTTCCTGACCCC	2382	False	NA	NA	False	NA	NA	NA	24749030	24751107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24749084_24750457
ES_00027700	chr18	+	627	4	FSM	ENSMUSG00000024271.9	ENSMUST00000234351.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	889	junction_3	36.8088153692684	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACTACATTTCAGATTT	NA	False	NA	NA	False	NA	NA	NA	24759242	24764879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24759275_24759444_24759503_24760051_24760125_24764415
ES_00027701	chr18	+	1740	2	NNC	ENSMUSG00000046636.6	novel	801	2	NA	NA	-59	722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGATGTGCTTGTCAT	NA	False	NA	NA	False	AATAAA	-30	NA	27731637	27733531	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_27732447_27732600
ES_00027702	chr18	+	240	1	FSM	ENSMUSG00000092124.2	ENSMUST00000164667.2	1240	1	811	189	811	-189	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACGTATTCCCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	31743375	31743615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31743400_31743600
ES_00027703	chr18	+	779	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	-73	0	-72	0	multi-exon	FALSE	canonical	3	63	junction_2	315.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGAATGATGTTCAAACA	NA	False	NA	NA	False	NA	NA	NA	31922139	31929542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31922298_31924892_31925074_31929102
ES_00027704	chr18	+	205	2	Intergenic	novelGene_1941	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGACTTTTCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	32008837	32029285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_32008866_32029108
ES_00027705	chr18	+	383	1	Intergenic	novelGene_1943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGACTTTTCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	32028902	32029285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_32028900_32029300
ES_00027706	chr18	+	3697	14	NIC	ENSMUSG00000024384.5	novel	9613	14	NA	NA	6	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	55.8815314941366	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCATACTTTTTATTTCT	NA	False	NA	NA	False	AATAAA	-31	NA	32200826	32231501	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_32201093_32203159_32203276_32212723_32213631_32216321_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ES_00027710	chr18	+	1825	11	FSM	ENSMUSG00000005871.16	ENSMUST00000170023.8	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_9	9.4578010129205	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATAGGAAAAAGAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	34354065	34433255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431475_34431855_34433018
ES_00027711	chr18	+	243	2	Intergenic	novelGene_1946	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCTTTTTTTTTTACC	NA	False	NA	NA	False	NA	NA	NA	34374881	34417332	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34374914_34417121
ES_00027713	chr18	+	741	4	FSM	ENSMUSG00000014504.17	ENSMUST00000131713.8	744	4	3	0	3	0	multi-exon	FALSE	canonical	1	5	junction_1	857.182594316987	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTTTATAAGTTTAATAA	NA	False	NA	-74	True	NA	NA	NA	34464178	34469574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34464313_34467345_34467418_34467509_34467622_34469151
ES_00027714	chr18	+	3316	4	FSM	ENSMUSG00000014504.17	ENSMUST00000140279.8	3295	4	-19	-2	3	0	multi-exon	FALSE	canonical	3	833	junction_2	563.243188053694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464178	34469606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34464313_34464802_34467418_34467509_34467622_34469151
ES_00027715	chr18	+	2432	1	NIC	ENSMUSG00000014503.16	novel	3788	15	NA	NA	31145	-1114	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAGTCATATCTTCTTA	NA	False	NA	NA	False	NA	NA	NA	34573623	34576055	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_34573600_34576100
ES_00027716	chr18	+	3146	19	FSM	ENSMUSG00000003779.17	ENSMUST00000167161.9	3146	19	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_1	232.664995218447	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGGGACAGAAAATTGATA	5855	False	NA	53	True	TATAAA	-2	NA	34757665	34765888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34757906_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ES_00027717	chr18	+	3113	6	NIC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	-575	0	intron_retention	FALSE	canonical	3	945	junction_1	122.712672532221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	1846	False	NA	23	True	AATAAA	-20	NA	34761400	34765858	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ES_00027718	chr18	+	4640	1	FSM	ENSMUSG00000078240.3	ENSMUST00000105038.3	1656	1	-2944	-40	-2944	40	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATACAAAGGAAACCTTCAA	1807	False	NA	NA	False	NA	NA	NA	34866467	34871107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34866500_34871100
ES_00027720	chr18	+	4226	6	NNC	ENSMUSG00000034300.18	novel	4256	5	NA	NA	-4	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	16	junction_5	9.35093578204877	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCCATTTTCCCAAGC	5083	False	NA	4	True	AATAAA	-11	NA	34892604	34906791	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650_34904331_34904364
ES_00027722	chr18	+	6698	24	NNC	ENSMUSG00000038773.12	novel	6363	24	NA	NA	0	339	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	75.0991279377679	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGAGTAGACAAAATTCT	NA	False	NA	154	True	ATTAAA	-17	NA	34910099	34972052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502_34937103_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960395_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ES_00027723	chr18	+	218	1	FSM	ENSMUSG00000062742.5	ENSMUST00000081864.5	365	1	-4	151	-4	-151	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCCATCCCTTCGTCAG	NA	False	NA	NA	False	NA	NA	NA	35669631	35669849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35669600_35669800
ES_00027725	chr18	+	880	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	-23	0	1	0	multi-exon	FALSE	canonical	3	24	junction_1	1458.22751997073	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	4641	False	NA	-19	True	NA	NA	NA	35731670	35749572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
ES_00027726	chr18	+	7813	6	FSM	ENSMUSG00000091896.9	ENSMUST00000236235.2	8159	6	346	0	346	0	multi-exon	FALSE	canonical	3	837	junction_1	122.977071033587	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTTCACCTGTCTCA	NA	False	NA	10	True	AATAAA	-21	NA	35920722	35940214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ES_00027729	chr18	+	864	4	NNC	ENSMUSG00000046727.14	novel	831	3	NA	NA	0	50775	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	406.912767064392	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTAAGCAATGAATTGA	NA	False	NA	NA	False	NA	NA	NA	36481749	36586925	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_36481870_36499567_36499795_36535549_36536031_36586889
ES_00027730	chr18	+	2033	10	NNC	ENSMUSG00000024483.20	novel	8200	34	NA	NA	-46	16994	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	32.2367783214019	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGCATACAAGTCTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	36693617	36734039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_36694109_36708071_36708223_36711712_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818
ES_00027731	chr18	+	6684	32	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	70	-2	multi-exon	FALSE	canonical	3	51	junction_10	33.3266868156782	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGCTCCATTGTTGT	506	False	NA	31	True	AGTAAA	-13	NA	36714199	36798968	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr18_+_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747815_36747871_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ES_00027732	chr18	+	6465	27	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	16	-2	multi-exon	FALSE	canonical	3	51	junction_4	33.3977508720813	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGCTCCATTGTTGT	6244	False	NA	31	True	AGTAAA	-13	NA	36733868	36798968	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr18_+_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ES_00027735	chr18	+	2104	8	NIC	ENSMUSG00000117942.2	novel	2235	8	NA	NA	78	-2	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	54.257887604909	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGCTCCATTGTTGT	NA	False	NA	31	True	AGTAAA	-13	NA	36780990	36798968	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ES_00027738	chr18	+	768	3	FSM	ENSMUSG00000090264.2	ENSMUST00000036765.8	744	3	-24	0	-24	0	multi-exon	FALSE	canonical	2	3	junction_1	104	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTCCATTGTTGTCC	560	False	NA	33	True	AGTAAA	-15	NA	36797088	36798970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36797356_36798334_36798509_36798643
ES_00027742	chr18	+	2300	4	NNC	ENSMUSG00000102918.2	novel	4687	4	NA	NA	-19	-6	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	99.533355659743	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGTGTGACCGCGTCT	NA	False	NA	11	True	AATAAA	-14	NA	37939443	37974920	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_37939631_37958073_37958133_37966317_37966407_37972955
ES_00027743	chr18	+	3361	1	FSM	ENSMUSG00000023036.15	ENSMUST00000193222.2	3100	1	-263	2	114	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37948245	37951606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_37948200_37951600
ES_00027745	chr18	+	684	6	FSM	ENSMUSG00000060450.15	ENSMUST00000237903.2	662	6	-22	0	-14	0	multi-exon	FALSE	canonical	3	40	junction_1	67.1428328267433	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCTTTCTGCCACCAC	947	False	NA	NA	False	AATACA	-2	NA	38429708	38434751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708
ES_00027746	chr18	+	2432	10	FSM	ENSMUSG00000060450.15	ENSMUST00000236116.2	2410	10	-22	0	-14	0	multi-exon	FALSE	canonical	2	2	junction_2	94.0070919310524	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCCTTGTGGGTCACTT	947	False	NA	NA	False	ATTAAA	-16	NA	38429708	38450239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38429852_38430552_38430629_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ES_00027747	chr18	+	2498	6	NIC	ENSMUSG00000060450.15	novel	2886	8	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	976	False	NA	18	True	AATAAA	-23	NA	38429737	38450897	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ES_00027748	chr18	+	644	3	FSM	ENSMUSG00000024425.5	ENSMUST00000236803.2	729	3	-71	156	-36	-156	multi-exon	FALSE	canonical	3	668	junction_1	54	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTTTGGAATAATAAG	9031	False	NA	NA	False	NA	NA	NA	38551923	38580993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38552230_38575969_38576058_38580743
ES_00027752	chr18	+	2307	11	NNC	ENSMUSG00000024498.17	novel	4101	21	NA	NA	0	17754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	221.665513781463	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACCACCATCAT	NA	False	NA	NA	False	TTTAAA	-40	NA	42685572	42726612	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582_42708665_42726580
ES_00027753	chr18	+	2116	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	535	0	246	0	multi-exon	FALSE	canonical	3	1710	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46731326	46742245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_46731768_46740570
ES_00027754	chr18	+	3634	1	FSM	ENSMUSG00000037416.14	ENSMUST00000181042.2	3669	1	72	-37	72	37	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTAATGTAAAGCTGCAA	5206	False	NA	NA	False	NA	NA	NA	50089113	50092747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_50089100_50092700
ES_00027756	chr18	+	2021	14	NIC	ENSMUSG00000034484.9	novel	2067	15	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	346.56256212617	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTAGGGATCTTTTTTT	NA	False	NA	38	True	AATAAA	-18	NA	53309389	53353937	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
ES_00027761	chr18	+	4300	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	12	True	AATAAA	-22	NA	57506963	57526028	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ES_00027762	chr18	+	1035	1	Genic_Genomic	ENSMUSG00000073554.4	novel	NA	NA	NA	NA	-53	339	mono-exon	FALSE	NA	NA	NA	NA	NA	348	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATCATTGGTTACAAAA	1116	False	NA	NA	False	AATAAA	-28	NA	60559310	60560345	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr18_+_60559300_60560300
ES_00027765	chr18	+	667	4	FSM	ENSMUSG00000024608.12	ENSMUST00000122279.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	24831	junction_3	1445.1337500576	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60909310	60911617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_60909624_60910001_60910164_60910884_60910962_60911502
ES_00027766	chr18	+	202	1	Intergenic	novelGene_2002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCAAAGTAATCTAAGCT	NA	False	NA	NA	False	NA	NA	NA	61670548	61670750	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_61670500_61670800
ES_00027767	chr18	+	2259	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTGTTGCTTAGATAA	493	False	NA	-31	True	NA	NA	NA	61688409	61721253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ES_00027768	chr18	+	716	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183083.8	483	3	-53	-180	-53	0	multi-exon	FALSE	canonical	3	10	junction_1	32.5	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772559	61780543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61772804_61778233_61778437_61780274
ES_00027770	chr18	+	3604	2	NNC	ENSMUSG00000098098.8	novel	588	3	NA	NA	2438	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACGAATGACTTTCTTAA	NA	False	NA	14	True	AATAAA	-14	NA	61775161	61780540	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_61778500_61780274
ES_00027771	chr18	+	734	3	FSM	ENSMUSG00000024578.4	ENSMUST00000235713.2	748	3	-19	33	-19	-33	multi-exon	FALSE	canonical	0	0	junction_1	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATAAACAGTAAACGCTG	NA	False	NA	NA	False	NA	NA	NA	61820966	61825574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_61821113_61823188_61823479_61825276
ES_00027772	chr18	+	6947	28	NNC	ENSMUSG00000040560.11	novel	7135	28	NA	NA	5	8	intron_retention	TRUE	non_canonical	3	26	junction_27	9.6775162612963	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTATCCTGTTCTTA	NA	False	NA	10	True	AATAAA	-19	NA	63841790	64122833	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226_64122398_64122440
ES_00027774	chr18	+	1745	1	FSM	ENSMUSG00000032688.10	ENSMUST00000224229.2	6404	1	4900	-241	110	241	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATATTTTTTTAAAAAAA	3667	False	NA	NA	False	NA	NA	NA	65586855	65588600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65586900_65588600
ES_00027775	chr18	+	5422	8	FSM	ENSMUSG00000042439.14	ENSMUST00000182478.8	5471	8	49	0	49	0	multi-exon	FALSE	canonical	3	9	junction_1	31.3492505525105	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTTCAAGAGAGTTATT	NA	False	NA	9	True	AATAAA	-22	NA	65715537	65822012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65715881_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65815965_65816079_65818595_65818762_65820032
ES_00027776	chr18	+	5750	9	NIC	ENSMUSG00000042439.14	novel	3580	7	NA	NA	-244	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	NA	False	NA	8	True	AATAAA	-21	NA	65716241	65822011	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_65716579_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ES_00027777	chr18	+	3577	7	FSM	ENSMUSG00000042439.14	ENSMUST00000237756.2	3580	7	0	3	0	-3	multi-exon	FALSE	canonical	2	2	junction_1	30.6865877325366	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACATAGTCAAACTTT	NA	False	NA	NA	False	AATAAA	-17	NA	65758208	65822511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65758406_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ES_00027778	chr18	+	2781	1	FSM	ENSMUSG00000117775.2	ENSMUST00000237947.2	2678	1	29	-132	29	132	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGATTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	65767892	65770673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65767900_65770700
ES_00027780	chr18	+	1860	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	-8	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAATTCTGAGACTC	NA	False	NA	87	True	AATAAA	-17	NA	68433462	68454977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ES_00027782	chr18	+	4015	2	FSM	ENSMUSG00000007480.6	ENSMUST00000172148.4	3904	2	-146	35	-146	-35	multi-exon	FALSE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATATAATTAATAAAATGG	NA	False	NA	NA	False	AATAAA	-4	NA	68470520	68475482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_68470797_68471743
ES_00027784	chr18	+	7464	21	NNC	ENSMUSG00000053477.19	novel	2986	20	NA	NA	18	66078	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	28.6799581589653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	3262	False	NA	NA	False	AAGAAA	-6	NA	69478861	69888228	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147_69820997_69888213
ES_00027787	chr18	+	717	4	ISM	ENSMUSG00000053477.19	ENSMUST00000114978.9	2437	13	84928	237	-1783	10	3prime_fragment	FALSE	canonical	3	57	junction_1	39.4067112163511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGCAGACGCAAGAGGTTT	NA	False	NA	47	True	AATATA	-23	NA	69810986	69816279	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_+_69811201_69814639_69814870_69815753_69815895_69816147
ES_00027788	chr18	+	1817	12	NNC	ENSMUSG00000038903.14	novel	1618	11	NA	NA	-557	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	11.4660836548564	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70057939	70102555	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_70058085_70058478_70058692_70071916_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
ES_00027789	chr18	+	1496	9	FSM	ENSMUSG00000079608.11	ENSMUST00000114959.9	1496	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.87082869338697	5577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGGTTATAGTATACA	NA	False	NA	NA	False	NA	NA	NA	70605524	70634137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_70605640_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
ES_00027790	chr18	+	1146	3	NNC	ENSMUSG00000024513.17	novel	1290	3	NA	NA	103	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	155	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTATGGAAGTGCCTGGT	NA	False	NA	11	True	AATAAA	-28	NA	70701507	70715981	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_70702039_70713723_70713884_70715526
ES_00027791	chr18	+	2602	15	NNC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	30	0	at_least_one_novel_splicesite	TRUE	canonical	3	34	junction_8	60.669605408377	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349231	74354564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352322_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ES_00027792	chr18	+	5947	16	NNC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	25	junction_11	20.3550703484141	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401260	74415756	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406646_74406669_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
ES_00027793	chr18	+	3920	12	FSM	ENSMUSG00000024561.12	ENSMUST00000224332.2	3920	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	18.5708382432741	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATGTTAGTGTTTC	NA	False	NA	NA	False	TTTAAA	-17	NA	74406588	74414305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
ES_00027795	chr18	+	2240	16	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-3	-25	combination_of_known_splicesites	FALSE	canonical	3	7	junction_14	49.9165525875157	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACGGGAAACGTGC	NA	False	NA	-7	True	NA	NA	NA	75151863	75420010	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75376355_75376470_75419690
ES_00027796	chr18	+	513	2	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	120199	-6	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTCAACATGTGACTTAT	8118	False	NA	12	True	AATAAA	-12	NA	75378694	75420029	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_75378869_75419690
ES_00027799	chr18	+	8544	11	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-141	785	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	78.4140293569971	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGGATCCAGTTTGTTT	NA	False	NA	15	True	ATTAAA	-30	NA	76374975	76444819	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_76375051_76395515_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ES_00027800	chr18	+	465	2	Antisense	novelGene_ENSMUSG00000025420.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77105547	77123201	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_+_77105899_77123087
ES_00027802	chr18	+	5705	14	NIC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	372	junction_1	335.189180884838	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	7929	False	NA	13	True	AATAAA	-26	NA	77152933	77240813	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398_77237795_77240310
ES_00027804	chr18	+	1173	1	Genic_Genomic	ENSMUSG00000056682.9	novel	NA	NA	NA	NA	98	31	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGCCTTTAATCCCAGT	1815	False	NA	NA	False	NA	NA	NA	77802007	77803180	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr18_+_77802000_77803200
ES_00027805	chr18	+	2674	12	FSM	ENSMUSG00000025428.16	ENSMUST00000114748.2	2674	12	0	0	0	0	multi-exon	FALSE	canonical	1	23	junction_1	1570.67692939348	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTCTTGGTTGATGA	NA	False	NA	17	True	ATTAAA	-19	NA	77861655	77870566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_77862244_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ES_00027806	chr18	+	3325	17	NNC	ENSMUSG00000025429.10	novel	2267	15	NA	NA	3	883	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	10.3493659226061	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTCTTGTGTTAGAC	2213	False	NA	NA	False	AATAAA	-25	NA	77877616	77971462	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77877687_77882004_77882171_77882305_77882451_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ES_00027807	chr18	+	3011	15	NIC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	6	883	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	7.97860659923186	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTCTTGTGTTAGAC	2216	False	NA	NA	False	AATAAA	-25	NA	77877619	77971462	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_77877687_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ES_00027808	chr18	+	626	1	FSM	ENSMUSG00000117813.2	ENSMUST00000237811.2	534	1	-78	-14	-78	14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCCCTCACTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	80002142	80002768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80002100_80002800
ES_00027809	chr18	+	246	1	FSM	ENSMUSG00000118357.2	ENSMUST00000237241.2	246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCGATGTCAAGGACGGGC	NA	False	NA	NA	False	NA	NA	NA	80059499	80059745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80059500_80059700
ES_00027810	chr18	+	246	1	FSM	ENSMUSG00000118304.2	ENSMUST00000236770.2	246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCGATGTCAAGGACGGGC	NA	False	NA	NA	False	NA	NA	NA	80062768	80063014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80062800_80063000
ES_00027812	chr18	+	1654	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	False	NA	NA	False	AATAAA	-3	NA	80250077	80255938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
ES_00027820	chr18	-	2426	7	NIC	ENSMUSG00000063889.17	novel	2530	8	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	26.6671874949138	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTAATTGCCTGTGTGT	-5	True	NA	-8	True	TATAAA	-11	NA	3337488	3266361	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3325360_3325479_3337379
ES_00027822	chr18	-	2573	10	FSM	ENSMUSG00000063889.17	ENSMUST00000150235.8	2662	10	81	8	-9	-6	multi-exon	FALSE	canonical	3	10	junction_3	23.6596233650871	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTAATTGCCTGTGTGT	-29	True	NA	-8	True	TATAAA	-11	NA	3337598	3266361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_3267733_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
ES_00027823	chr18	-	1827	10	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	-7	-1	combination_of_known_splicesites	FALSE	canonical	3	6	junction_7	29.8071993954895	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTATGGCTTTTTCCTT	-27	True	NA	NA	False	AATATA	-10	NA	3337596	3267514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3299161_3299309_3309645_3309756_3325360_3325479_3337379
ES_00027824	chr18	-	650	2	FSM	ENSMUSG00000024235.12	ENSMUST00000172805.2	2048	2	0	1398	0	-1398	multi-exon	FALSE	canonical	3	28	junction_1	0	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAATCACTTCTTTCTT	406	False	NA	NA	False	NA	NA	NA	4353015	4348852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_4349339_4352851
ES_00027825	chr18	-	488	1	FSM	ENSMUSG00000117548.2	ENSMUST00000234469.2	768	1	259	21	259	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATGTATCACTAAATT	NA	False	NA	NA	False	NA	NA	NA	6014762	6014274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6014300_6014800
ES_00027826	chr18	-	4626	17	ISM	ENSMUSG00000041225.17	ENSMUST00000182559.8	4265	19	23738	-772	3	-18	3prime_fragment	FALSE	canonical	3	72	junction_11	40.8348426591802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATATTTTCCTTCCTTTC	NA	False	NA	-11	True	ATTAAA	-33	NA	6112360	6024444	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684
ES_00027830	chr18	-	1959	9	FSM	ENSMUSG00000006740.15	ENSMUST00000168031.2	1959	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	342.63966130616	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAAAATTAACTT	9536	False	NA	NA	False	NA	NA	NA	6214540	6203088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511
ES_00027831	chr18	-	3952	14	NNC	ENSMUSG00000024240.14	novel	3965	14	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	15.8252289026884	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTGGTCTTTGCCTT	-7	True	NA	1	True	AATAAA	-29	NA	6490845	6435950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454390_6455188_6455335_6462831_6462992_6490462
ES_00027833	chr18	-	4691	2	FSM	ENSMUSG00000057440.9	ENSMUST00000234210.2	4694	2	0	3	0	-3	multi-exon	FALSE	canonical	3	105	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCAAATAATGCTTTCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	7354666	7347966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_7351145_7353153
ES_00027836	chr18	-	1302	1	FSM	ENSMUSG00000117385.2	ENSMUST00000234783.2	493	1	-87	-722	-87	722	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTTCCTTGCACACTC	NA	False	NA	NA	False	ATTAAA	-35	NA	8228093	8226791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_8226800_8228100
ES_00027837	chr18	-	2019	15	FSM	ENSMUSG00000047879.18	ENSMUST00000116669.2	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	235.664107213151	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	14	True	NA	-65	True	AATAAA	-15	NA	10030067	9995593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10022817_10022851_10024533_10024680_10029912
ES_00027839	chr18	-	2165	2	FSM	ENSMUSG00000024290.10	ENSMUST00000235067.2	813	2	-74	-1278	-74	0	multi-exon	FALSE	canonical	3	204	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGGGCTCTAAAAC	NA	False	NA	NA	False	ATTAAA	-21	NA	10067984	10064400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10066052_10067470
ES_00027840	chr18	-	4572	12	FSM	ENSMUSG00000024293.17	ENSMUST00000127099.9	4572	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	52.6252932305684	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATACAATGTTATATTG	2	True	NA	-20	True	AATAAA	-42	NA	10610352	10566601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10577637_10577760_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
ES_00027842	chr18	-	3698	10	NIC	ENSMUSG00000024293.17	novel	4545	11	NA	NA	29	-507	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	42.0954236391324	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTACTGTATTTTTTT	31	False	NA	NA	False	AATATA	-9	NA	10610323	10567136	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_10567647_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
ES_00027844	chr18	-	219	2	Genic_Genomic	ENSMUSG00000083332.2	novel	796	1	NA	NA	-2206	-657	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTGGCCTTAAGGCTA	1465	False	NA	NA	False	AAGAAA	-26	NA	12878522	12876177	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr18_-_12876203_12878328
ES_00027845	chr18	-	2341	12	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	8	0	intron_retention	FALSE	canonical	0	0	junction_11	110.308508022495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996340	12888384	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12996128
ES_00027846	chr18	-	2474	14	NIC	ENSMUSG00000044252.19	novel	2674	15	NA	NA	35	1	combination_of_known_junctions	FALSE	canonical	3	43	junction_13	119.481176255048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTGAATGCTTTCAGAA	NA	False	NA	-24	True	AATAAA	-23	NA	12995445	12888386	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_12889153_12889244_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
ES_00027849	chr18	-	967	2	Intergenic	novelGene_1922	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGGAGCACCGTTAGGAAG	NA	False	NA	NA	False	NA	NA	NA	14704763	14703707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_14704372_14704460
ES_00027851	chr18	-	5419	29	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-278	-8	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_23	35.6899917372375	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGTAGGCACTAGCCTA	NA	False	NA	-30	True	AATAAA	-11	NA	21029428	20950287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999219_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ES_00027853	chr18	-	3040	16	NNC	ENSMUSG00000033382.16	novel	2703	16	NA	NA	-325	0	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_10	12.8571640211466	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGTTCTATGGTCAT	NA	False	NA	-2	True	AATAAA	-28	NA	21029475	20979201	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999261_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ES_00027856	chr18	-	2388	3	NNC	ENSMUSG00000024268.17	novel	413	3	NA	NA	-414	10	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_2	19	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAACCTCAAAGAGTCC	NA	False	NA	NA	False	AATAAA	-20	NA	25620368	25610678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_25612769_25619850_25620077_25620296
ES_00027857	chr18	-	241	1	FSM	ENSMUSG00000091785.3	ENSMUST00000164794.3	463	1	337	-115	337	115	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTAAAAAAAAATCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30592260	30592019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_30592000_30592300
ES_00027858	chr18	-	213	2	Antisense	novelGene_ENSMUSG00000117533.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCACCAGCCTCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	31872127	31834974	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_-_31835172_31872111
ES_00027859	chr18	-	843	5	FSM	ENSMUSG00000042834.16	ENSMUST00000237066.2	843	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.2854627751008	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTCTTCCACAACTCAA	NA	False	NA	NA	False	NA	NA	NA	33596907	33571491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596652
ES_00027860	chr18	-	3581	23	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	331	0	331	0	3prime_fragment	FALSE	canonical	3	125	junction_9	28.0317116763164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTCTCTTTACTG	NA	False	NA	0	True	AATAAA	-13	NA	34139641	33929379	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
ES_00027861	chr18	-	2342	22	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-28985	-42	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_21	43.4022999066663	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34054012	33930011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34053910
ES_00027862	chr18	-	3459	24	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-497	-42	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_19	47.5448251335035	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34140516	33930011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013319_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
ES_00027874	chr18	-	1883	8	FSM	ENSMUSG00000024366.9	ENSMUST00000025224.9	1997	8	110	4	110	-4	multi-exon	FALSE	canonical	0	0	junction_2	0.903507902905251	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTCTTTCCTAATTTT	9460	False	NA	NA	False	ATTAAA	-16	NA	34853330	34822954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_34823677_34823868_34823958_34824317_34824453_34824601_34824706_34828616_34828930_34837533_34837627_34844168_34844457_34853191
ES_00027875	chr18	-	2358	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	0	166	at_least_one_novel_splicesite	FALSE	canonical	1	36	junction_9	1557.8670313926	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTATTTTCAGCTGCAT	199	False	NA	9	True	AATAAA	-37	NA	35087410	35071153	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079086_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ES_00027878	chr18	-	473	1	FSM	ENSMUSG00000118145.2	ENSMUST00000237898.2	267	1	-70	-136	-70	136	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACTTCATTACTGGGT	NA	False	NA	NA	False	NA	NA	NA	35103858	35103385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35103400_35103900
ES_00027879	chr18	-	6624	1	FSM	ENSMUSG00000071862.4	ENSMUST00000236530.2	2872	1	-63	-3689	-47	555	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGCTCTGTAAGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	35348124	35341500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35341500_35348100
ES_00027882	chr18	-	223	1	Intergenic	novelGene_1962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCTGTAGATGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	35772908	35772685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_35772700_35772900
ES_00027883	chr18	-	225	2	Intergenic	novelGene_1963	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCTGTAGATGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	35777275	35772685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_35772858_35777222
ES_00027884	chr18	-	4888	1	FSM	ENSMUSG00000073600.6	ENSMUST00000190196.5	4888	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTGTGTAGTCCTAATT	NA	False	NA	NA	False	AATAAA	-39	NA	35788291	35783403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35783400_35788300
ES_00027886	chr18	-	2828	2	FSM	ENSMUSG00000100320.2	ENSMUST00000188160.2	571	2	-2287	30	-2287	-30	multi-exon	FALSE	canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCTGGCTCTCCGCACC	NA	False	NA	NA	False	NA	NA	NA	35966433	35963471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35963617_35963750
ES_00027888	chr18	-	950	5	NNC	ENSMUSG00000024346.7	novel	1109	4	NA	NA	214	9912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1490.7038605974	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATACAAGGGACCAAAGA	NA	False	NA	NA	False	NA	NA	NA	36587363	36526816	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_36526850_36537137_36537514_36565358_36565444_36584132_36584300_36587074
ES_00027889	chr18	-	737	5	NNC	ENSMUSG00000024346.7	novel	1109	4	NA	NA	0	9912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1336.95876899776	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATACAAGGGACCAAAGA	NA	False	NA	NA	False	NA	NA	NA	36587577	36526816	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_36526852_36537135_36537514_36565358_36565444_36584132_36584300_36587505
ES_00027891	chr18	-	1038	5	NIC	ENSMUSG00000117679.2	novel	2067	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	28.1547065337219	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36809538	36804206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36809223_36809309_36809415
ES_00027892	chr18	-	1926	12	NIC	ENSMUSG00000117679.2	novel	2067	13	NA	NA	85	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	19.1285343517553	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812284	36804206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ES_00027896	chr18	-	1853	3	NNC	ENSMUSG00000051316.9	novel	3302	2	NA	NA	-51	76739	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCCACAAGAACAGAATGC	NA	False	NA	NA	False	NA	NA	NA	37777308	37696804	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_37696837_37775075_37776586_37776997
ES_00027897	chr18	-	1608	3	NNC	ENSMUSG00000051316.9	novel	3302	2	NA	NA	0	3351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGAGTTCACCCATGCAC	NA	False	NA	NA	False	TTTAAA	-29	NA	37777257	37770192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_37770221_37775265_37776586_37776997
ES_00027898	chr18	-	557	1	FSM	ENSMUSG00000102827.2	ENSMUST00000193056.2	475	1	-82	0	-82	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATCTTCCCAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	37786042	37785485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_37785500_37786000
ES_00027899	chr18	-	5708	29	NNC	ENSMUSG00000024456.17	novel	5741	29	NA	NA	8	13024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.080686996814	193	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCAGTATGCATACTTC	NA	False	NA	NA	False	NA	NA	NA	38068521	37963629	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_37963656_37976656_37978552_37984603_37984691_37986355_37986492_37986596_37986761_37987531_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993567_38022267_38022277_38022750_38022866_38023529_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
ES_00027900	chr18	-	1812	6	FSM	ENSMUSG00000024454.17	ENSMUST00000144471.8	1811	6	0	-1	0	1	multi-exon	FALSE	canonical	3	500	junction_2	48.6514131346665	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTAGTTAGGCCATGT	NA	False	NA	-4	True	AATAAA	-22	NA	38077128	38070023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_38070737_38074005_38074164_38074431_38074820_38074930_38075021_38076508_38076574_38076730
ES_00027901	chr18	-	4617	19	NIC	ENSMUSG00000038524.14	novel	4270	20	NA	NA	8	0	intron_retention	FALSE	canonical	2	8	junction_12	2.4317854031377	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGTCATGTGTTCGTC	NA	False	NA	-2	True	AATAAA	-16	NA	38102802	38090486	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100949_38101266_38101335_38101802_38101849_38102407_38102506_38102758
ES_00027904	chr18	-	6494	8	FSM	ENSMUSG00000024431.16	ENSMUST00000115571.8	6327	8	0	-167	0	165	multi-exon	FALSE	canonical	3	54	junction_5	7.56738436465659	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCAAAAGCGTACCCTG	NA	False	NA	NA	False	NA	NA	NA	39620298	39543432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050
ES_00027906	chr18	-	5980	7	ISM	ENSMUSG00000071856.11	ENSMUST00000164666.6	3606	17	198342	-4258	55592	38	3prime_fragment	FALSE	canonical	2	5	junction_2	1.89296944860009	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTAGATGTAAGATGACGA	4737	False	NA	NA	False	ATTAAA	-16	NA	44596991	44558088	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_44563135_44564402_44564526_44575978_44576077_44578796_44579004_44582271_44582507_44592865_44593050_44596904
ES_00027907	chr18	-	666	1	FSM	ENSMUSG00000071856.11	ENSMUST00000202845.2	3729	1	2	3061	2	-3061	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTGAGTCTCTGGAAACG	NA	False	NA	NA	False	NA	NA	NA	44795349	44794683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_44794700_44795300
ES_00027908	chr18	-	1691	1	FSM	ENSMUSG00000117929.2	ENSMUST00000237335.2	973	1	-60	-658	-60	658	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGGCCATTTATGT	NA	False	NA	NA	False	AATAAA	-27	NA	45204421	45202730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_45202700_45204400
ES_00027909	chr18	-	270	2	Intergenic	novelGene_1986	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	265	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCATGGTGTGTCCTTA	NA	False	NA	-3	True	AATAAA	-24	NA	45691505	45691128	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_45691359_45691465
ES_00027912	chr18	-	649	3	NNC	ENSMUSG00000024477.5	novel	1039	2	NA	NA	-2	5209	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	69	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGCTGAATCCAGTGTAG	NA	False	NA	NA	False	AAAAAG	-7	NA	46413888	46401348	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_46401733_46407652_46407776_46413746
ES_00027914	chr18	-	407	1	FSM	ENSMUSG00000046487.7	ENSMUST00000180618.2	576	1	209	-40	209	40	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCCCAACTAAGACCAGA	NA	False	NA	NA	False	NA	NA	NA	46598648	46598241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46598200_46598600
ES_00027915	chr18	-	266	1	ISM	ENSMUSG00000118097.2	ENSMUST00000236601.2	1197	2	347	1088	347	-1088	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACATCCTGGAGAACAAAG	NA	False	NA	NA	False	NA	NA	NA	48202742	48202476	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_48202500_48202700
ES_00027916	chr18	-	394	1	Intergenic	novelGene_1995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAGAATTCTTAAAAAAA	3134	False	NA	NA	False	NA	NA	NA	56788360	56787966	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_56788000_56788400
ES_00027917	chr18	-	394	2	Intergenic	novelGene_1996	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	248	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAGAATTCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56795334	56787966	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_56788309_56795282
ES_00027918	chr18	-	240	1	Intergenic	novelGene_1998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCGTGCTCATCTCTAG	NA	False	NA	-39	True	AAAACA	-43	NA	56795334	56795094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_56795100_56795300
ES_00027919	chr18	-	726	6	FSM	ENSMUSG00000024592.16	ENSMUST00000139243.9	726	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	41.2281457259479	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCGTGACCGTGGATGT	NA	False	NA	NA	False	NA	NA	NA	57108426	57090685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57100164_57100262_57106455_57106557_57108381
ES_00027921	chr18	-	288	1	FSM	ENSMUSG00000080779.2	ENSMUST00000118088.2	412	1	201	-77	201	77	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAAACACCTGGAGAGC	NA	False	NA	NA	False	AATAAA	-35	NA	60912265	60911977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_60912000_60912300
ES_00027923	chr18	-	2189	7	NNC	ENSMUSG00000024579.8	novel	2017	6	NA	NA	-129	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	34.3693177121688	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGACTTATTCTTTTTT	NA	False	NA	0	True	TATAAA	-17	NA	61840835	61829906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836423_61836466_61836582_61836790_61840564
ES_00027924	chr18	-	3445	19	FSM	ENSMUSG00000033032.16	ENSMUST00000120472.2	3444	19	0	-1	0	1	multi-exon	TRUE	canonical	1	2	junction_17	8.65740245593045	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCAGAGGGTAGCTGGCT	NA	False	NA	2	True	AATAAA	-22	NA	61919773	61863330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870566_61870679_61871754_61871828_61872194_61872341_61874700_61874913_61876348_61876502_61876737_61876832_61879848_61879942_61881766_61881947_61884736_61884949_61885579_61885679_61888633_61888746_61889910_61890006_61890722_61890807_61891670_61891800_61919646
ES_00027925	chr18	-	4218	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-189	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	64.6469568111548	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681955	62637225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ES_00027926	chr18	-	4310	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	0	94	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_8	75.834346259214	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	46	True	AATAAA	-17	NA	62681766	62637131	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648619_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
ES_00027928	chr18	-	213	1	FSM	ENSMUSG00000117875.2	ENSMUST00000237314.2	1385	1	1347	-175	1347	175	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	5433	False	NA	NA	False	NA	NA	NA	63676859	63676646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_63676600_63676900
ES_00027930	chr18	-	1917	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	-326	-586	-326	586	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCATTGGGGTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	64583086	64581169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64581200_64583100
ES_00027931	chr18	-	1648	2	FSM	ENSMUSG00000024587.11	ENSMUST00000237503.2	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	4998	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	AATAAA	-23	NA	64635026	64632725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64633721_64634373
ES_00027933	chr18	-	221	2	Antisense	novelGene_ENSMUSG00000001473.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAGAATTGGAAGCTTGG	NA	False	NA	NA	False	NA	NA	NA	67532019	67496814	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_-_67496845_67531828
ES_00027934	chr18	-	3122	18	NNC	ENSMUSG00000024527.11	novel	3094	17	NA	NA	0	41019	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.217689615875	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAGAATTGGAAGCTTGG	NA	False	NA	NA	False	NA	NA	NA	67582242	67496814	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_67496845_67537835_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
ES_00027937	chr18	-	1645	10	FSM	ENSMUSG00000024539.18	ENSMUST00000120934.8	1497	10	-134	-14	-112	14	multi-exon	FALSE	canonical	0	0	junction_7	167.715440958197	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATGTGTGTGTTAT	NA	False	NA	0	True	ATTAAA	-33	NA	67857777	67798566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_67798945_67805736_67805839_67808789_67808900_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ES_00027939	chr18	-	3387	8	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	-17	0	intron_retention	FALSE	canonical	3	82	junction_4	46.2782180878624	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605443	70585283	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
ES_00027940	chr18	-	3003	9	NNC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_6	75.5925550236265	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605389	70585282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602573_70602849_70604743_70605051_70605361
ES_00027941	chr18	-	2854	7	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	37	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	77.1463256127961	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605389	70585282	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_70586460_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
ES_00027942	chr18	-	3281	8	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	37	-3	intron_retention	FALSE	canonical	0	0	junction_5	77.2488689567818	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATGTTGTTACGTC	NA	False	NA	-6	True	AATAAA	-14	NA	70605389	70585286	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70601589_70602564_70602849_70604743_70605051_70605361
ES_00027944	chr18	-	2433	10	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	118.745292304345	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663319	70641755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70661772_70661896_70663258
ES_00027945	chr18	-	670	2	FSM	ENSMUSG00000092569.2	ENSMUST00000174338.2	690	2	20	0	20	0	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	75500139	75498402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_75498934_75500000
ES_00027946	chr18	-	380	1	FSM	ENSMUSG00000073532.4	ENSMUST00000097520.3	1252	1	52	820	52	-820	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACGGCAGGTGCGGGGACC	NA	False	NA	NA	False	NA	NA	NA	77273901	77273521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_77273500_77273900
ES_00027948	chr18	-	1268	10	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	21815	at_least_one_novel_splicesite	TRUE	canonical	3	258	junction_1	344.563850271006	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77855480	77823451	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_77823571_77845121_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ES_00027949	chr18	-	997	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_2	438.556848509974	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855477	77845268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_77845454_77846169_77846216_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ES_00027952	chr18	-	1031	5	FSM	ENSMUSG00000024566.11	ENSMUST00000235385.2	2533	5	0	1502	0	-1502	multi-exon	FALSE	canonical	3	129	junction_4	6.96419413859206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAAGCTGTATGAAGTGC	9744	False	NA	NA	False	NA	NA	NA	80977275	80934783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ES_00027955	chr18	-	1701	9	NIC	ENSMUSG00000041258.19	novel	1503	9	NA	NA	11	190	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	30.3603359665205	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGAGTTGTCATGTCC	NA	False	NA	NA	False	AATAAA	-14	NA	82710997	82674927	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_82675266_82676127_82676332_82682962_82683107_82686696_82686870_82689810_82689936_82692431_82692611_82698716_82698882_82700269_82700413_82710767
ES_00027958	chr18	-	2921	3	FSM	ENSMUSG00000056153.16	ENSMUST00000123826.2	2921	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	105.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATCTTTACAGTGTGCT	NA	False	NA	NA	False	AATAGA	-35	NA	88912340	88886297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_88889043_88905336_88905458_88912285
ES_00027959	chr18	+	292	1	Intergenic	novelGene_1889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCTTTGGTATCTTCCA	NA	False	NA	NA	False	NA	NA	NA	4281599	4281891	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_4281600_4281900
ES_00027960	chr18	+	654	1	Intergenic	novelGene_1894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	5868298	5868952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_5868300_5869000
ES_00027962	chr18	+	245	1	Intergenic	novelGene_1902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	572	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTAAATCCTAATTTAGA	NA	False	NA	NA	False	NA	NA	NA	8145658	8145903	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8145700_8145900
ES_00027963	chr18	+	286	1	Intergenic	novelGene_1904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAGTTTAAGACCTAAAG	NA	False	NA	NA	False	NA	NA	NA	8146118	8146404	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8146100_8146400
ES_00027964	chr18	+	396	1	Intergenic	novelGene_1906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATGGTGGCACACGCC	NA	False	NA	NA	False	NA	NA	NA	8416294	8416690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8416300_8416700
ES_00027965	chr18	+	278	1	Intergenic	novelGene_1909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCACTCAACTAGATCAT	NA	False	NA	NA	False	NA	NA	NA	9468884	9469162	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9468900_9469200
ES_00027968	chr18	+	264	1	Intergenic	novelGene_1933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCTCACTCTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	21054234	21054498	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_21054200_21054500
ES_00027969	chr18	+	213	1	Intergenic	novelGene_1940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATACTCTTTGGTTGGT	NA	False	NA	NA	False	NA	NA	NA	30829389	30829602	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_30829400_30829600
ES_00027971	chr18	+	376	1	Intergenic	novelGene_1955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGCCCTGGTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	35067716	35068092	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35067700_35068100
ES_00027972	chr18	+	279	1	Intergenic	novelGene_1956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTTTGTTACCGACACA	NA	False	NA	NA	False	NA	NA	NA	35103053	35103332	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35103100_35103300
ES_00027973	chr18	+	208	1	Intergenic	novelGene_1957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACAGGGTTTCTGTGTA	NA	False	NA	NA	False	NA	NA	NA	35110516	35110724	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35110500_35110700
ES_00027974	chr18	+	220	1	Intergenic	novelGene_1958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGAGTGAGTTCTAGGAC	NA	False	NA	NA	False	NA	NA	NA	35182823	35183043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35182800_35183000
ES_00027975	chr18	+	205	1	Intergenic	novelGene_1964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAACAAAAAAGAATTACCT	7132	False	NA	NA	False	NA	NA	NA	35802649	35802854	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35802600_35802900
ES_00027977	chr18	+	243	1	Intergenic	novelGene_1978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTCCCATTTAAGCGT	3595	False	NA	NA	False	NA	NA	NA	42557005	42557248	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_42557000_42557200
ES_00027978	chr18	+	2942	1	Intergenic	novelGene_1983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTTTTTCACGAGATG	NA	False	NA	NA	False	NA	NA	NA	44868845	44871787	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_44868800_44871800
ES_00027979	chr18	+	212	1	Intergenic	novelGene_1984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGATGCCAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	45027100	45027312	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_45027100_45027300
ES_00027980	chr18	+	209	1	Intergenic	novelGene_1989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTTGTGATTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	47086399	47086608	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_47086400_47086600
ES_00027981	chr18	+	221	1	Intergenic	novelGene_1991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGTAAAAATGACCTTA	NA	False	NA	NA	False	AAAAAG	-16	NA	53586155	53586376	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_53586200_53586400
ES_00027982	chr18	+	271	1	Intergenic	novelGene_1993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGCAGCGTTTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	54466396	54466667	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_54466400_54466700
ES_00027983	chr18	+	220	1	Intergenic	novelGene_1999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAATCTTTTCTAAAA	NA	False	NA	NA	False	NA	NA	NA	58921131	58921351	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_58921100_58921400
ES_00027984	chr18	+	200	1	Intergenic	novelGene_2003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGGGTTGAGTCTCCCT	8357	False	NA	NA	False	NA	NA	NA	61734779	61734979	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_61734800_61735000
ES_00027986	chr18	+	218	1	Intergenic	novelGene_2004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAGTACCTGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	64832431	64832649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_64832400_64832600
ES_00027987	chr18	+	204	1	Intergenic	novelGene_2006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCCCACTAGTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	65522775	65522979	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_65522800_65523000
ES_00027988	chr18	+	218	1	Intergenic	novelGene_2010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGCTCTTCTGGTGAAC	6174	False	NA	NA	False	NA	NA	NA	75494603	75494821	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_75494600_75494800
ES_00027990	chr18	+	326	1	Intergenic	novelGene_2015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACTTATATCACATAGCA	NA	False	NA	NA	False	NA	NA	NA	78677315	78677641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_78677300_78677600
ES_00027994	chr18	+	313	3	Intergenic	novelGene_1885	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	1	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGCATGTTCCAAT	NA	False	NA	NA	False	NA	NA	NA	3836244	3840442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_3836272_3838012_3838091_3840234
ES_00027995	chr18	+	424	4	Intergenic	novelGene_1886	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGCATGTTCCAAT	NA	False	NA	NA	False	NA	NA	NA	3836360	3840442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_3836385_3836847_3836909_3837959_3838091_3840234
ES_00027996	chr18	+	3608	1	FSM	ENSMUSG00000024234.8	ENSMUST00000234614.2	3608	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAAGGAAAG	0	True	NA	NA	False	NA	NA	NA	4375603	4379211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_4375600_4379200
ES_00027997	chr18	+	2613	9	NIC	ENSMUSG00000024234.8	novel	2651	9	NA	NA	11	0	intron_retention	FALSE	canonical	3	50	junction_2	76.754376911027	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGATAACAGTATTTCTA	11	True	NA	17	True	AATAAA	-18	NA	4375614	4397330	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_4375779_4379568_4379742_4380672_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ES_00027998	chr18	+	3637	14	NIC	ENSMUSG00000024283.16	novel	5208	14	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_11	143.536853812416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTTGGCTTTTTT	35	False	NA	NA	False	AATAAA	-22	NA	7869255	7927519	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921424_7921609_7921855_7921984_7926069
ES_00027999	chr18	+	494	1	FSM	ENSMUSG00000117484.2	ENSMUST00000234117.2	919	1	70	355	70	-355	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACACTTCGGGTGCCAT	NA	False	NA	NA	False	NA	NA	NA	8415198	8415692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_8415200_8415700
ES_00028000	chr18	+	4799	2	Intergenic	novelGene_1912	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	113	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAGAAGACTCCTGAAT	NA	False	NA	NA	False	NA	NA	NA	9592386	9598035	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9596253_9597102
ES_00028001	chr18	+	435	1	FSM	ENSMUSG00000092039.3	ENSMUST00000165917.3	832	1	-85	482	-85	-482	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGCTCACAAAAAAATGAAG	-3	True	NA	NA	False	NA	NA	NA	9916841	9917276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_9916800_9917300
ES_00028003	chr18	+	800	1	FSM	ENSMUSG00000117552.2	ENSMUST00000234693.2	1079	1	277	2	277	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGTGACCTGAAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	10262483	10263283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_10262500_10263300
ES_00028004	chr18	+	348	4	FSM	ENSMUSG00000042942.19	ENSMUST00000174553.2	586	4	0	238	0	-238	multi-exon	FALSE	canonical	2	2	junction_1	0	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCAATCGCAGACAGCGG	NA	False	NA	NA	False	NA	NA	NA	10509396	10515264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_10509410_10510627_10510757_10511328_10511464_10515193
ES_00028005	chr18	+	414	2	FSM	ENSMUSG00000005836.11	ENSMUST00000231831.2	3784	2	227	3143	227	-116	multi-exon	FALSE	canonical	1	3	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCAGCAAGCTGTTGTGGT	82	False	NA	NA	False	NA	NA	NA	11052734	11054440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_11052744_11054035
ES_00028006	chr18	+	1477	3	FSM	ENSMUSG00000024404.8	ENSMUST00000234563.2	1477	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	13	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGGAAAATGTAAGTTAT	5544	False	NA	NA	False	NA	NA	NA	12261836	12270395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_12262031_12268908_12270093_12270296
ES_00028009	chr18	+	205	1	FSM	ENSMUSG00000055795.7	ENSMUST00000069552.7	436	1	61	170	61	-170	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAGTTCCTGGCATCTT	NA	False	NA	NA	False	NA	NA	NA	14557985	14558190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_14558000_14558200
ES_00028010	chr18	+	718	5	NNC	ENSMUSG00000036743.5	novel	1023	6	NA	NA	-4	658	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_4	35.0142828000232	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTACACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	14839241	14865186	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14864991
ES_00028011	chr18	+	1562	7	FSM	ENSMUSG00000036743.5	ENSMUST00000234922.2	1918	7	356	0	356	0	multi-exon	FALSE	canonical	1	1	junction_1	35.6436841841892	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGTCTCCTTCAAAGG	NA	False	NA	13	True	NA	NA	NA	14839615	14895358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_14839665_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ES_00028012	chr18	+	635	2	Genic_Genomic	ENSMUSG00000058064.7	novel	534	1	NA	NA	-23	69522	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1680	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAACCACGTGATA	NA	False	NA	NA	False	NA	NA	NA	15965827	16035906	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr18_+_15966432_16035875
ES_00028013	chr18	+	598	3	Antisense	novelGene_ENSMUSG00002076630.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	7	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTTGTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	20895641	20997370	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_+_20895821_20951304_20951388_20997034
ES_00028014	chr18	+	573	3	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-311	-16494	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	15	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTGTTCTTTCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	21194668	21200748	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_21194811_21194905_21195074_21200485
ES_00028015	chr18	+	3886	8	FSM	ENSMUSG00000024277.15	ENSMUST00000170802.8	3936	8	46	4	-14	0	multi-exon	FALSE	canonical	2	2	junction_1	61.3021955860756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGGACTTATTCTTA	1852	False	NA	14	True	AATAAA	-18	NA	23885435	24026914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_23885478_23905660_23905717_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
ES_00028016	chr18	+	1545	3	FSM	ENSMUSG00000024273.9	ENSMUST00000234303.2	356	3	-48	-1141	-44	640	multi-exon	FALSE	canonical	2	3	junction_1	102.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGCAACACACACAAAAAA	296	False	NA	NA	False	ATTAAA	-20	NA	24603862	24611495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_24604038_24608581_24608782_24610325
ES_00028017	chr18	+	941	6	FSM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	-19	505	2	-505	multi-exon	FALSE	canonical	3	29	junction_5	7.56306816047562	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATAAGGTTCTATGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	25302057	25423460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995
ES_00028018	chr18	+	1160	8	FSM	ENSMUSG00000024400.17	ENSMUST00000082319.15	1115	8	-44	-1	-44	1	multi-exon	FALSE	canonical	1	3	junction_7	160.52299727161	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTAGTTTTTCCCTCTT	5603	False	NA	NA	False	AGTAAA	-18	NA	31937098	31974696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_31974492
ES_00028019	chr18	+	1174	2	FSM	ENSMUSG00000024384.5	ENSMUST00000212104.2	624	2	-139	-411	-78	411	multi-exon	FALSE	canonical	3	201	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAACTCTTCATGTAACC	NA	False	NA	NA	False	NA	NA	NA	32200715	32203956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32201093_32203159
ES_00028021	chr18	+	1530	14	FSM	ENSMUSG00000024381.17	ENSMUST00000234857.2	1530	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	8.17631157710597	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32510282	32568343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32564723_32564796_32565035_32565147_32565376_32565479_32568187
ES_00028022	chr18	+	12518	16	NNC	ENSMUSG00000005871.16	novel	12811	16	NA	NA	-60	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	24.5586825560511	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTGAAGGTTGCCATT	NA	False	NA	4	True	ATTAAA	-15	NA	34353916	34455243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34429083_34429183_34431475_34431855_34433018_34433115_34434314_34434369_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
ES_00028023	chr18	+	12289	17	NNC	ENSMUSG00000005871.16	novel	12811	16	NA	NA	-29	1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_9	21.8974884404582	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTGAAGGTTGCCATT	NA	False	NA	4	True	ATTAAA	-15	NA	34353947	34455243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431778_34431855_34433018_34433115_34434314_34434369_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
ES_00028024	chr18	+	214	1	Intergenic	novelGene_1947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTTTTTTTTTTAC	7681	False	NA	NA	False	NA	NA	NA	34417117	34417331	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34417100_34417300
ES_00028025	chr18	+	2684	1	FSM	ENSMUSG00000078240.3	ENSMUST00000105038.3	1656	1	-988	-40	-988	40	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATACAAAGGAAACCTTCAA	3763	False	NA	NA	False	NA	NA	NA	34868423	34871107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_34868400_34871100
ES_00028029	chr18	+	1604	2	FSM	ENSMUSG00000117869.2	ENSMUST00000235277.2	1586	2	-18	0	-4	0	multi-exon	FALSE	canonical	3	167	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTTATTTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	35686456	35689017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35686523_35687479
ES_00028030	chr18	+	716	3	FSM	ENSMUSG00000117869.2	ENSMUST00000237021.2	708	3	-8	0	-4	0	multi-exon	FALSE	canonical	3	167	junction_1	17	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTTAAAAGAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	35686456	35690283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35686523_35687479_35687515_35689668
ES_00028032	chr18	+	2638	13	FSM	ENSMUSG00000037236.17	ENSMUST00000235960.2	2638	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	348.249990029513	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTAGGTCATGTTGAT	NA	False	NA	32	True	AATAAA	-8	NA	35695263	35724472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_35695346_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ES_00028037	chr18	+	3592	2	ISM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	-97	0	-97	0	intron_retention	FALSE	canonical	3	48	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35962743	35994741	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_+_35963040_35991445
ES_00028038	chr18	+	212	1	Intergenic	novelGene_1965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTTAAGAGCACCGACTGC	NA	False	NA	NA	False	AAAACA	-25	NA	35985688	35985900	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35985700_35985900
ES_00028039	chr18	+	249	2	FSM	ENSMUSG00000118080.2	ENSMUST00000235808.2	539	2	40	250	40	-250	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGTGCACTTGGCCATG	8060	False	NA	NA	False	NA	NA	NA	36007406	36008840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36007478_36008662
ES_00028040	chr18	+	206	1	Intergenic	novelGene_1966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGTTTGGTGGGACC	NA	False	NA	NA	False	NA	NA	NA	36032989	36033195	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_36033000_36033200
ES_00028041	chr18	+	228	2	Intergenic	novelGene_1969	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTTTTAAGATCAGC	NA	False	NA	NA	False	NA	NA	NA	36465202	36471796	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_36465230_36471595
ES_00028042	chr18	+	800	4	NNC	ENSMUSG00000046727.14	novel	872	4	NA	NA	0	50775	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	406.912767064392	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTAAGCAATGAATTGA	NA	False	NA	NA	False	NA	NA	NA	36481815	36586925	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_36481870_36499567_36499795_36535549_36536030_36586886
ES_00028044	chr18	+	7510	35	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	4	-4	multi-exon	FALSE	canonical	3	51	junction_13	32.6766823734335	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCTTGGCTCCATTGTT	NA	False	NA	29	True	AGTAAA	-11	NA	36693667	36798966	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747815_36747871_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ES_00028045	chr18	+	8264	36	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8200	34	NA	NA	6	-4	multi-exon	FALSE	canonical	3	35	junction_30	35.0868310664516	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCTTGGCTCCATTGTT	NA	False	NA	29	True	AGTAAA	-11	NA	36693669	36798966	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ES_00028046	chr18	+	8319	36	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	6	0	multi-exon	FALSE	canonical	3	51	junction_13	31.0697700706796	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTCCATTGTTGTCC	NA	False	NA	33	True	AGTAAA	-15	NA	36693669	36798970	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ES_00028047	chr18	+	235	1	FSM	ENSMUSG00002074846.1	ENSMUST00020181660.1	143	1	6	-98	6	98	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCCAGAAAAAAATTGGG	4762	False	NA	NA	False	AATAAA	-31	NA	36934924	36935159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_36934900_36935200
ES_00028050	chr18	+	777	6	FSM	ENSMUSG00000060450.15	ENSMUST00000236982.2	776	6	-1	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	71.3929968554339	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGGCTGTCACCAACTC	975	False	NA	NA	False	NA	NA	NA	38429736	38434838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_38429852_38430518_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708
ES_00028053	chr18	+	542	3	Intergenic	novelGene_1980	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCCCTGATTGTTCTAG	NA	False	NA	NA	False	AATGAA	-22	NA	44499366	44509092	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_44499514_44501242_44501420_44508874
ES_00028054	chr18	+	3373	9	ISM	ENSMUSG00000054477.17	ENSMUST00000183850.8	3546	11	288960	0	-1504	0	3prime_fragment	FALSE	canonical	2	4	junction_1	5.63471383479232	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATTTGTTTGGTCTCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	45691031	45818950	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_+_45691556_45692417_45693692_45694287_45694384_45725072_45725492_45788264_45788407_45803284_45803396_45810003_45810132_45816137_45816208_45818341
ES_00028055	chr18	+	1905	4	FSM	ENSMUSG00000057561.11	ENSMUST00000235455.2	1905	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	698.014804045492	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_46730868_46731707_46731768_46732343_46732468_46740570
ES_00028056	chr18	+	1302	7	NIC	ENSMUSG00000024480.10	novel	978	7	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	269.615157833037	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTCAGTGTTGACTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	46875009	46923688	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_46875149_46887437_46887530_46890448_46890503_46891069_46891182_46912254_46912327_46913727_46913836_46922963
ES_00028057	chr18	+	607	5	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	12	-5050	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	119.357393989648	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAAAAATCACCTTTT	NA	False	NA	NA	False	NA	NA	NA	47054893	47062239	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47062050
ES_00028058	chr18	+	2067	3	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	2252	-2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	152.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAAGCTGGGTTTTCAGG	5238	False	NA	14	True	AATAAA	-10	NA	47061300	47067287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_47061413_47061585_47061726_47065472
ES_00028061	chr18	+	11382	44	NIC	ENSMUSG00000037416.14	novel	11319	43	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_33	30.2545894680986	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCGCATGCTTTTGT	NA	False	NA	14	True	AATAAA	-15	NA	49965736	50097321	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_49966244_49973453_49973580_49976852_49976925_49979651_49979731_49981734_49981862_49984496_49984564_49985312_49985492_49990299_49990490_49992182_49992352_49995971_49996185_49997014_49997269_49997376_49998062_49998149_49998272_50000871_50000962_50001041_50001145_50003939_50004060_50004636_50004859_50010749_50012433_50013801_50013910_50021782_50021953_50022529_50022628_50023682_50023849_50024457_50024720_50026285_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50058985_50059049_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ES_00028062	chr18	+	2617	23	NIC	ENSMUSG00000024507.7	novel	2684	24	NA	NA	42	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	66.5107491467816	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTCCTGCTCCTCTTTG	NA	False	NA	11	True	AATAAA	-20	NA	50261309	50329333	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
ES_00028064	chr18	+	3346	7	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	-43	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	82.1227062930155	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATAAATAAAGGTAGTTT	NA	False	NA	NA	False	TTTAAA	-28	NA	53995150	54088620	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_53995673_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54086316
ES_00028065	chr18	+	4840	13	NNC	ENSMUSG00000073563.4	novel	2180	13	NA	NA	-43	479	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	70.1610745990174	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTTTACTGAAGGATA	NA	False	NA	NA	False	NA	NA	NA	53995150	54089099	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54069924_54070021_54081119_54081227_54086316
ES_00028066	chr18	+	4249	13	FSM	ENSMUSG00000073563.4	ENSMUST00000069597.8	4249	13	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	67.2040838706167	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATAAATAAAGGTAGTTT	NA	False	NA	NA	False	TTTAAA	-28	NA	53995193	54088620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065262_54065412_54066521_54066618_54081119_54081227_54081716_54081741_54086316
ES_00028068	chr18	+	442	3	NNC	ENSMUSG00000024603.9	novel	1724	9	NA	NA	7	-4909	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	96.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGATCTATTAGCAGTAAA	NA	False	NA	NA	False	NA	NA	NA	60659296	60671131	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_60659438_60667664_60667736_60670901
ES_00028069	chr18	+	3852	16	ISM	ENSMUSG00000024620.12	ENSMUST00000115274.2	5423	24	21303	-8	21303	3	3prime_fragment	FALSE	canonical	1	6	junction_2	3.84476556141232	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGATTTCTCAGGGTTGGGT	NA	False	NA	NA	False	ATTAAA	-23	NA	61199574	61218136	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_+_61199686_61201167_61201292_61201813_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
ES_00028070	chr18	+	3613	10	FSM	ENSMUSG00000045629.9	ENSMUST00000236759.2	3615	10	0	2	0	2	multi-exon	FALSE	canonical	3	14	junction_4	4.32049379893857	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACCCTTTTGTCACCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	62111029	62148788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_62111144_62120626_62120761_62122263_62122306_62122414_62124116_62124208_62124390_62140718_62140870_62141527_62141651_62144877_62145029_62146103_62146301_62147969
ES_00028071	chr18	+	3535	12	NIC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	1	0	combination_of_known_junctions	FALSE	non_canonical	1	9	junction_3	68.5344818803759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110947	63132521	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_63111096_63113536_63113605_63115689_63115775_63116430_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ES_00028074	chr18	+	358	2	FSM	ENSMUSG00000042439.14	ENSMUST00000182655.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGCAATGGTTTGCATA	NA	False	NA	NA	False	AAAAAG	-14	NA	65716485	65756319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65716579_65756054
ES_00028075	chr18	+	591	1	FSM	ENSMUSG00000024516.14	ENSMUST00000235959.2	3992	1	3395	6	-2598	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCCATGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65937036	65937627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_65937000_65937600
ES_00028076	chr18	+	1302	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	-2	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774668	67787232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ES_00028080	chr18	+	2824	3	FSM	ENSMUSG00000053477.19	ENSMUST00000146908.2	3693	3	869	0	869	0	multi-exon	FALSE	canonical	3	123	junction_1	14	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATGCCAA	NA	False	NA	NA	False	AAAAAG	-32	NA	69813638	69817599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_+_69814870_69815753_69815895_69816147
ES_00028083	chr18	+	2634	15	NIC	ENSMUSG00000024561.12	novel	2833	15	NA	NA	24	-1877	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	18.2702222320409	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCTGTGCAATAATGTAT	NA	False	NA	NA	False	NA	NA	NA	74401269	74412428	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
ES_00028087	chr18	+	8543	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	1910	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	269.397486842694	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6432	False	NA	7	True	AATAAA	-18	NA	77126250	77243406	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398_77237795_77240310
ES_00028088	chr18	+	2038	13	NIC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	3	372	junction_1	338.465163150754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACTATGTAGCATTTAT	7929	False	NA	16	True	ATTAAA	-28	NA	77152933	77234630	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ES_00028097	chr18	-	1875	8	FSM	ENSMUSG00000063889.17	ENSMUST00000154470.8	1996	8	121	0	-38	0	multi-exon	FALSE	canonical	3	12	junction_6	25.7428412874535	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTAGGAAAGGGTGAT	3	True	NA	NA	False	AATAAA	-21	NA	3337627	3267260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
ES_00028098	chr18	-	1583	7	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	0	-21	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	33.6930589620803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAATTTGCTCTTACCT	-5	True	NA	NA	False	NA	NA	NA	3337574	3267443	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_3268130_3273421_3273579_3287903_3288093_3295039_3295183_3295321_3295417_3325360_3325479_3337379
ES_00028099	chr18	-	1453	8	FSM	ENSMUSG00000063889.17	ENSMUST00000156234.8	1436	8	0	-17	0	0	multi-exon	FALSE	canonical	3	10	junction_3	25.0639997133868	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTACAGTTGCTTTTGAA	NA	False	NA	NA	False	AAAACA	-37	NA	3325474	3267557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_3268130_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3299161_3299309_3325360
ES_00028100	chr18	-	619	1	FSM	ENSMUSG00000073647.5	ENSMUST00000097690.5	619	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATAATGACCACTGCTCA	396	False	NA	NA	False	AGTAAA	-17	NA	4198938	4198319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_4198300_4198900
ES_00028101	chr18	-	213	1	Intergenic	novelGene_1895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTATTAACAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	5875639	5875426	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_5875400_5875600
ES_00028102	chr18	-	3686	16	NIC	ENSMUSG00000041225.17	novel	4431	18	NA	NA	2	-14	combination_of_known_junctions	FALSE	canonical	3	24	junction_15	48.531593375404	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGCTTTGGGTGGGGAA	-21	True	NA	NA	False	NA	NA	NA	6135968	6024798	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6135803
ES_00028103	chr18	-	4163	19	FSM	ENSMUSG00000041225.17	ENSMUST00000182559.8	4265	19	102	0	-26	0	multi-exon	FALSE	canonical	3	72	junction_11	38.5140666943045	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGAGTTTTTTTCCAT	-49	True	NA	-23	True	AATAAA	-14	NA	6135996	6025216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ES_00028104	chr18	-	3800	14	FSM	ENSMUSG00000024240.14	ENSMUST00000115870.9	3817	14	17	0	17	0	multi-exon	FALSE	canonical	1	5	junction_13	15.1118120655772	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTGGTCTTTGCCTT	6	True	NA	1	True	AATAAA	-29	NA	6516091	6435950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6515864
ES_00028105	chr18	-	476	1	FSM	ENSMUSG00000091285.3	ENSMUST00000171339.3	466	1	32	-42	32	42	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAGGAAAACAAAAACAA	NA	False	NA	NA	False	AATAAA	-9	NA	9726638	9726162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_9726200_9726600
ES_00028107	chr18	-	379	1	FSM	ENSMUSG00000094111.3	ENSMUST00000179225.3	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCCTCCTGGCCACA	NA	False	NA	NA	False	NA	NA	NA	10483465	10483086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_10483100_10483500
ES_00028108	chr18	-	2688	15	FSM	ENSMUSG00000044252.19	ENSMUST00000121888.8	2674	15	0	-14	0	0	multi-exon	FALSE	canonical	3	46	junction_1	113.316357772281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	12995480	12888370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_12889153_12889244_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
ES_00028109	chr18	-	1504	2	Antisense	novelGene_ENSMUSG00000053740.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAGAGCCCGAAACTGG	NA	False	NA	NA	False	NA	NA	NA	14704752	14703167	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_-_14704406_14704486
ES_00028110	chr18	-	2086	4	FSM	ENSMUSG00000037013.18	ENSMUST00000235011.2	2086	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	426.45072660534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14784180	14758685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_14760369_14766599_14766734_14774012_14774181_14784079
ES_00028111	chr18	-	474	1	FSM	ENSMUSG00000062962.6	ENSMUST00000084199.5	442	1	-106	74	-106	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTCAAACTCTTCAGCAG	NA	False	NA	NA	False	NA	NA	NA	21210272	21209798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_21209800_21210300
ES_00028113	chr18	-	702	2	Intergenic	novelGene_1937	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	5	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTGTTTTTTCGAG	NA	False	NA	NA	False	AATAAA	-17	NA	24234488	24233608	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_24234107_24234284
ES_00028115	chr18	-	655	1	FSM	ENSMUSG00000091561.4	ENSMUST00000165131.4	658	1	142	-139	142	139	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGTCCTTGGGCTCTCC	NA	False	NA	NA	False	NA	NA	NA	31953430	31952775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_31952800_31953400
ES_00028116	chr18	-	2125	3	FSM	ENSMUSG00000090523.3	ENSMUST00000174459.2	2180	3	48	7	-6	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCATGAATTGTTTAGGTT	NA	False	NA	NA	False	AATAAA	-11	NA	32693039	32661381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_32663255_32665786_32665838_32692838
ES_00028117	chr18	-	5292	6	FSM	ENSMUSG00000024378.10	ENSMUST00000119991.8	941	6	-84	-4267	12	217	multi-exon	FALSE	canonical	1	1	junction_2	21.0959711793508	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTTTCCTATAATATT	NA	False	NA	-12	True	AATAAA	-21	NA	33346903	33332190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33336869_33338273_33338379_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ES_00028118	chr18	-	1112	1	FSM	ENSMUSG00000117730.2	ENSMUST00000237135.2	558	1	-43	-511	-43	511	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGACTGCTTAAAAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	33518051	33516939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33516900_33518100
ES_00028119	chr18	-	330	1	FSM	ENSMUSG00000024376.8	ENSMUST00000236716.2	2286	1	-11	1967	-11	-1493	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGTTTAGCATCAGGAAAA	NA	False	NA	NA	False	AGTAAA	-40	NA	33932266	33931936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_33931900_33932300
ES_00028120	chr18	-	4933	20	NIC	ENSMUSG00000036501.8	novel	3344	21	NA	NA	0	1781	combination_of_known_splicesites	FALSE	canonical	3	10	junction_18	9.19412072770848	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGTAAATGTATGTTTG	NA	False	NA	-26	True	AATAAA	-20	NA	34639876	34573622	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209_34627352_34627651_34627830_34630386_34630600_34632738_34632906_34639581
ES_00028121	chr18	-	1915	15	NNC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_13	49.8334470910812	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2818	False	NA	-15	True	AATAAA	-22	NA	34884560	34866045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884013_34884166_34884265_34884366
ES_00028123	chr18	-	335	1	Intergenic	novelGene_1954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	35031643	35031308	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_35031300_35031600
ES_00028124	chr18	-	267	1	FSM	ENSMUSG00000118145.2	ENSMUST00000237898.2	267	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGTGTGCATTTTTGA	NA	False	NA	NA	False	AAAACA	-40	NA	35103788	35103521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35103500_35103800
ES_00028126	chr18	-	534	4	FSM	ENSMUSG00000024357.11	ENSMUST00000236007.2	538	4	0	4	0	-4	multi-exon	FALSE	canonical	1	6	junction_1	61.0482504981829	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCCTAGGAAGTAATTTC	NA	False	NA	NA	False	NA	NA	NA	35631915	35563100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35563361_35565516_35565605_35571319_35571434_35631843
ES_00028127	chr18	-	5202	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	26	-12	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACATACAAAATTCGACTT	NA	False	NA	-16	True	ATTAAA	-6	NA	35836148	35804167	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
ES_00028128	chr18	-	2129	7	FSM	ENSMUSG00000024349.11	ENSMUST00000237919.2	2134	7	0	5	0	-5	multi-exon	TRUE	canonical	2	5	junction_4	3.4960294939005	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAACTGCCTTGGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	35873532	35866738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35873359
ES_00028129	chr18	-	2005	12	NNC	ENSMUSG00000117679.2	novel	2067	13	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	19.540591361159	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812357	36804206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809537_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ES_00028130	chr18	-	1800	3	NNC	ENSMUSG00000051316.9	novel	3302	2	NA	NA	0	76737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGCCACAAGAACAGAAT	NA	False	NA	NA	False	NA	NA	NA	37777257	37696806	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_37696836_37775074_37776586_37776997
ES_00028131	chr18	-	1209	1	FSM	ENSMUSG00000050304.5	ENSMUST00000239320.2	1346	1	121	16	121	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATATGCATCTTGAATG	NA	False	NA	NA	False	CATAAA	-2	NA	37771655	37770446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_37770400_37771700
ES_00028132	chr18	-	2306	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	0	61925	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.375952558535	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGATAGAAAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	38472033	38398662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_38398700_38460607_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ES_00028134	chr18	-	6337	9	NIC	ENSMUSG00000024431.16	novel	6436	9	NA	NA	205	-13	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	22.6770809408971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGACTCCCAACATGT	NA	False	NA	-26	True	AATAAA	-17	NA	39624147	39543612	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39624124
ES_00028135	chr18	-	3859	33	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	5015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	457.619844275792	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAAGTGTCCATTGTAA	NA	False	NA	NA	False	NA	NA	NA	42395156	42330347	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_42330381_42335413_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ES_00028137	chr18	-	816	1	FSM	ENSMUSG00000117662.2	ENSMUST00000236054.2	792	1	-20	-4	-1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTAACTGAGTTTTTAT	NA	False	NA	NA	False	TTTAAA	-21	NA	42408263	42407447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_42407400_42408300
ES_00028138	chr18	-	3811	2	ISM	ENSMUSG00000071856.11	ENSMUST00000164666.6	3606	17	230915	-3007	88165	-1213	3prime_fragment	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCCCATGTTTACACAGG	NA	False	NA	NA	False	NA	NA	NA	44564418	44559339	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_44563135_44564402
ES_00028139	chr18	-	979	1	FSM	ENSMUSG00000117929.2	ENSMUST00000237335.2	973	1	0	-6	0	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2522	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCTCTCCCTCTCTCCC	NA	False	NA	NA	False	NA	NA	NA	45204361	45203382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_45203400_45204400
ES_00028140	chr18	-	1277	1	FSM	ENSMUSG00000024477.5	ENSMUST00000235979.2	2439	1	1221	-59	1221	59	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAATTTTCATAGAACA	NA	False	NA	NA	False	AATAGA	-26	NA	46407775	46406498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46406500_46407800
ES_00028141	chr18	-	1788	1	FSM	ENSMUSG00000118282.2	ENSMUST00000237083.2	1810	1	-26	48	-26	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCCAAAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	46490060	46488272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46488300_46490100
ES_00028142	chr18	-	1465	4	FSM	ENSMUSG00000033022.9	ENSMUST00000234819.2	1466	4	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_3	76.3340611319016	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACATTGCCTTTTTGAT	2617	False	NA	-4	True	AATAAA	-18	NA	46861422	46846271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46861039
ES_00028143	chr18	-	544	1	FSM	ENSMUSG00000069379.4	ENSMUST00000091905.4	615	1	85	-14	85	14	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGACTAACCTATGCT	NA	False	NA	NA	False	NA	NA	NA	51998868	51998324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_51998300_51998900
ES_00028144	chr18	-	241	2	Intergenic	novelGene_1997	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCTCATCTCTAGGGA	NA	False	NA	-36	True	NA	NA	NA	56797397	56795091	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_-_56795283_56797347
ES_00028145	chr18	-	374	3	FSM	ENSMUSG00000032656.15	ENSMUST00000153044.2	4653	3	149	4130	149	-4130	multi-exon	FALSE	canonical	0	0	junction_2	2	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGTACTGGGACCTT	NA	False	NA	NA	False	NA	NA	NA	57058438	56940870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_56940941_56944903_56945148_57058378
ES_00028146	chr18	-	258	2	FSM	ENSMUSG00000024598.10	ENSMUST00000236932.2	600	2	342	0	342	0	multi-exon	FALSE	canonical	1	1	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACACCATGGGCTCCTTC	8747	False	NA	NA	False	NA	NA	NA	58159610	58158172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_58158224_58159403
ES_00028147	chr18	-	7879	15	NNC	ENSMUSG00000054008.10	novel	6478	15	NA	NA	-358	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	10.8871765047187	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGGGTCTTGTTCTTGT	NA	False	NA	-7	True	AATAAA	-18	NA	60882080	60817565	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443_60833573_60835844_60836031_60836808_60836964_60838147_60838236_60840672_60841168_60845794_60846705_60881998
ES_00028149	chr18	-	2421	3	ISM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	7886	-683	7864	683	3prime_fragment	FALSE	canonical	3	77	junction_2	6	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGCATAGTTCACTAGAGG	NA	False	NA	NA	False	AATAAA	-25	NA	61832820	61829224	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr18_-_61831048_61831434_61831576_61832363
ES_00028151	chr18	-	4202	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_21	58.4071253380051	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681755	62637225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
ES_00028152	chr18	-	2103	3	FSM	ENSMUSG00000041789.8	ENSMUST00000067450.3	2101	3	19	-21	19	21	multi-exon	FALSE	canonical	1	1	junction_1	4	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGACAGAAGTTCCAACCA	NA	False	NA	NA	False	NA	NA	NA	62889367	62884723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_62886405_62888196_62888246_62888994
ES_00028153	chr18	-	202	2	Antisense	novelGene_ENSMUSG00000045991.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	793	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCCTCGTCTTCTTCTGT	NA	False	NA	NA	False	AAGAAA	-6	NA	64493882	64491497	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr18_-_64491650_64493832
ES_00028154	chr18	-	1958	10	FSM	ENSMUSG00000024588.11	ENSMUST00000237717.2	2171	10	213	0	213	0	multi-exon	FALSE	canonical	1	3	junction_9	101.751088203602	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTGTACGCCTTCATT	NA	False	NA	-1	True	AATAAA	-19	NA	64612273	64590331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64612215
ES_00028156	chr18	-	4705	14	NNC	ENSMUSG00000041891.17	novel	4676	13	NA	NA	0	97653	intron_retention	FALSE	non_canonical	0	0	junction_1	259.05495064874	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAGATCGTCAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	66135710	66016155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_66016182_66113824_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ES_00028157	chr18	-	2192	11	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	13.2759180473518	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378326	67358113	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360947_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
ES_00028161	chr18	-	3022	9	NNC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-17	-8	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	66.2324269146164	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATGATATATGTTGTT	NA	False	NA	-11	True	AATAAA	-9	NA	70605443	70585291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70600913_70601589_70602519_70602849_70604743_70605051_70605361
ES_00028162	chr18	-	3197	10	NNC	ENSMUSG00000038425.19	novel	3504	10	NA	NA	0	334	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	99.7728283850399	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGCCACAGTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	70663339	70641416	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661896_70662821
ES_00028174	chr18	-	4364	29	NIC	ENSMUSG00000024566.11	novel	5150	29	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	26.4832205252261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGACCTGAGCGCCT	9772	False	NA	-30	True	AATAAA	-24	NA	80977247	80778289	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr18_-_80779365_80781867_80781997_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ES_00028179	chr18	+	411	1	Intergenic	novelGene_1884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAACAGGCATGCAT	297	False	NA	NA	False	NA	NA	NA	3000461	3000872	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_3000500_3000900
ES_00028180	chr18	+	268	1	Intergenic	novelGene_1890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGATATTCTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	4319347	4319615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_4319300_4319600
ES_00028181	chr18	+	237	1	Intergenic	novelGene_1891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCTGAGAACCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	4475802	4476039	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_4475800_4476000
ES_00028182	chr18	+	223	1	Intergenic	novelGene_1900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAGCAGCAAAGAGATCA	NA	False	NA	NA	False	NA	NA	NA	8137299	8137522	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8137300_8137500
ES_00028183	chr18	+	329	1	Intergenic	novelGene_1901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGAGGGCATAGCCTT	NA	False	NA	NA	False	NA	NA	NA	8142601	8142930	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_8142600_8142900
ES_00028184	chr18	+	422	1	Intergenic	novelGene_1911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGCTCCTCACTGCTGA	NA	False	NA	NA	False	NA	NA	NA	9470618	9471040	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9470600_9471000
ES_00028185	chr18	+	1427	1	Intergenic	novelGene_1918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATACCCAGATCCTCACT	NA	False	NA	NA	False	NA	NA	NA	9892746	9894173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_9892700_9894200
ES_00028187	chr18	+	335	1	Intergenic	novelGene_1924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCAGCCGCACGATTCT	2833	False	NA	NA	False	NA	NA	NA	18235107	18235442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_18235100_18235400
ES_00028188	chr18	+	395	1	Intergenic	novelGene_1928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTTCAGTCCTAAATCC	NA	False	NA	NA	False	NA	NA	NA	18968303	18968698	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_18968300_18968700
ES_00028189	chr18	+	206	1	Intergenic	novelGene_1932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTTTCAAAGCAGGCA	NA	False	NA	NA	False	NA	NA	NA	21047058	21047264	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_21047100_21047300
ES_00028190	chr18	+	201	1	Intergenic	novelGene_1934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	628	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCATAGGACTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	23261516	23261717	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_23261500_23261700
ES_00028191	chr18	+	348	1	Intergenic	novelGene_1948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTGGACGCCCACTCG	NA	False	NA	NA	False	NA	NA	NA	34530785	34531133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34530800_34531100
ES_00028192	chr18	+	232	1	Intergenic	novelGene_1949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATGGGGGGGGCACAC	NA	False	NA	NA	False	TTTAAA	-25	NA	34665950	34666182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34666000_34666200
ES_00028193	chr18	+	206	1	Intergenic	novelGene_1951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGCTATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	34700241	34700447	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34700200_34700400
ES_00028194	chr18	+	202	1	Intergenic	novelGene_1952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTTTAATAATACCCAT	NA	False	NA	NA	False	NA	NA	NA	34807046	34807248	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_34807000_34807200
ES_00028195	chr18	+	273	1	Intergenic	novelGene_1959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAGGAGGTTGTTATGA	8775	False	NA	NA	False	NA	NA	NA	35545317	35545590	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35545300_35545600
ES_00028196	chr18	+	280	1	Intergenic	novelGene_1960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATCTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35652982	35653262	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_35653000_35653300
ES_00028197	chr18	+	514	1	Intergenic	novelGene_1967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAGGAGGAAGATTT	NA	False	NA	NA	False	NA	NA	NA	36382673	36383187	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_36382700_36383200
ES_00028198	chr18	+	206	1	Intergenic	novelGene_1968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGATAGGTTTTTATATT	NA	False	NA	NA	False	NA	NA	NA	36400934	36401140	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_36400900_36401100
ES_00028199	chr18	+	234	1	Intergenic	novelGene_1970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTTCTTTTGGAAGAA	1193	False	NA	NA	False	NA	NA	NA	36728817	36729051	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_36728800_36729100
ES_00028200	chr18	+	206	1	Intergenic	novelGene_1972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATCAAATTCTTAACTCT	7741	False	NA	NA	False	NA	NA	NA	38427233	38427439	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_38427200_38427400
ES_00028201	chr18	+	204	1	Intergenic	novelGene_1973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAATAAAAGGAGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	38476033	38476237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_38476000_38476200
ES_00028202	chr18	+	428	1	Intergenic	novelGene_1985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGTGTCCATCACTGAT	NA	False	NA	NA	False	NA	NA	NA	45202729	45203157	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_45202700_45203200
ES_00028203	chr18	+	203	1	Intergenic	novelGene_1988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTCTCTGTTGATGAT	NA	False	NA	NA	False	NA	NA	NA	46701032	46701235	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_46701000_46701200
ES_00028204	chr18	+	425	1	Intergenic	novelGene_2007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCTTGGGTTTGAATGC	NA	False	NA	NA	False	NA	NA	NA	65795281	65795706	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr18_+_65795300_65795700
ES_00028213	chr19	+	621	1	FSM	ENSMUSG00000118052.2	ENSMUST00000236294.2	652	1	47	-16	47	16	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCACACTGTAATCCAGG	NA	False	NA	NA	False	AATAAA	-29	NA	3255653	3256274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3255700_3256300
ES_00028215	chr19	+	807	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	-5	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	7366	False	NA	13	True	NA	NA	NA	3333054	3341201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
ES_00028217	chr19	+	4328	19	FSM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	-11	0	-11	0	multi-exon	TRUE	canonical	3	230	junction_1	37.3718386086055	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCTGTCCCTGTCTCC	NA	False	NA	18	True	AATAAA	-20	NA	3373273	3435733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
ES_00028218	chr19	+	488	3	FSM	ENSMUSG00000024900.6	ENSMUST00000237444.2	466	3	-22	0	-22	0	multi-exon	FALSE	canonical	3	368	junction_1	9	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGTAAGACCATGGTGGC	NA	False	NA	NA	False	NA	NA	NA	3425017	3428498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3425210_3426410_3426576_3428367
ES_00028219	chr19	+	2182	9	FSM	ENSMUSG00000024905.16	ENSMUST00000025840.16	2234	9	14	38	14	0	multi-exon	FALSE	canonical	1	2	junction_6	4.715334028465	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTTAGTAGCTGAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	3438870	3457785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3439334_3442102_3442262_3443924_3444046_3445919_3445994_3446962_3447055_3452485_3452577_3454048_3454187_3454932_3455109_3456917
ES_00028220	chr19	+	777	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237320.2	772	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	113	junction_1	87.4541149530554	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACTCTGGCTGTACCTA	NA	False	NA	NA	False	NA	NA	NA	3758287	3766734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3758437_3764406_3764626_3765637_3765803_3766490
ES_00028221	chr19	+	1882	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGTGTGGGTCTGTGTG	NA	False	NA	11	True	ATTAAA	-23	NA	3758332	3767881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
ES_00028222	chr19	+	2193	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237955.2	2193	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	122.806984962402	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCCAGCTTGTGTGGG	NA	False	NA	3	True	ATTAAA	-15	NA	3758370	3767873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3758437_3764046_3764626_3765637_3765803_3766490
ES_00028223	chr19	+	1875	4	FSM	ENSMUSG00000035372.3	ENSMUST00000235837.2	1875	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	139.776806214606	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	10	True	ATTAAA	-22	NA	3758410	3767880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3758509_3764403_3764626_3765637_3765803_3766490
ES_00028224	chr19	+	3314	11	FSM	ENSMUSG00000045098.20	ENSMUST00000052699.13	3290	11	-24	0	-24	0	multi-exon	FALSE	canonical	2	4	junction_1	86.3583232815459	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAACTTTGTTTTCTTGA	NA	False	NA	50	True	AATAAA	-9	NA	3817396	3858829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3817731_3818021_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
ES_00028225	chr19	+	6002	11	FSM	ENSMUSG00000045098.20	ENSMUST00000113977.9	6002	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	115.292844530786	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCAGTGTTCACTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	3817420	3868303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3817731_3818021_3818341_3836388_3836628_3843067_3843216_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224_3857422_3864114
ES_00028226	chr19	+	3376	9	FSM	ENSMUSG00000045098.20	ENSMUST00000005518.16	1283	9	-1687	-406	-990	0	multi-exon	FALSE	canonical	3	249	junction_4	20.1242235875077	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAGAATTGACCAAA	NA	False	NA	4	True	AATAAA	-14	NA	3816430	3855463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
ES_00028227	chr19	+	3032	10	FSM	ENSMUSG00000045098.20	ENSMUST00000237440.2	1721	10	-285	-1026	-172	165	multi-exon	FALSE	canonical	3	50	junction_2	94.5832966226067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGAGAGAGATAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	3817860	3856489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
ES_00028229	chr19	+	2975	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	36.6093828625975	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTTGAGTCTGG	NA	False	NA	56	True	AATAAA	-15	NA	3818032	3858835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
ES_00028231	chr19	+	5549	11	ISM	ENSMUSG00000045098.20	ENSMUST00000113972.9	4159	12	812	-1911	0	0	3prime_fragment	FALSE	canonical	3	88	junction_10	64.0924332507356	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGTCAGTGTTCACTGT	NA	False	NA	NA	False	AATAAA	-17	NA	3818232	3868302	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224_3857422_3864114
ES_00028233	chr19	+	2712	13	FSM	ENSMUSG00000024843.16	ENSMUST00000128694.8	2683	13	-27	-2	-27	0	multi-exon	FALSE	canonical	3	10	junction_2	76.2468123195251	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	5693	False	NA	4	True	AATAAA	-15	NA	3901745	3944367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3902414_3914647_3914760_3921002_3921063_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ES_00028234	chr19	+	2568	11	FSM	ENSMUSG00000024843.16	ENSMUST00000072055.13	2549	11	-24	5	0	0	multi-exon	FALSE	canonical	3	55	junction_2	49.9220392211696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCAGACTGTTACCC	5720	False	NA	1	True	AATAAA	-12	NA	3901772	3944364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3902414_3914647_3914760_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ES_00028235	chr19	+	4665	10	FSM	ENSMUSG00000024843.16	ENSMUST00000125859.8	4652	10	-13	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	52.5843238152884	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	5744	False	NA	4	True	AATAAA	-15	NA	3901796	3944367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3902414_3914647_3914760_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3942214_3942709_3942792_3943347
ES_00028237	chr19	+	754	3	FSM	ENSMUSG00000036908.18	ENSMUST00000162193.2	747	3	-7	0	-7	0	multi-exon	FALSE	canonical	2	11	junction_1	1.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGGTCTCACAG	5218	False	NA	NA	False	NA	NA	NA	3985218	3986746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3985353_3985761_3985904_3986268
ES_00028238	chr19	+	1310	5	NNC	ENSMUSG00000036908.18	novel	1991	10	NA	NA	738	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	10.2316909648406	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTGTAGGTTGTGTTCT	369	False	NA	NA	False	AATAAA	-20	NA	3993177	3999340	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_3993199_3993528_3993712_3994022_3994297_3997006_3997126_3998627
ES_00028239	chr19	+	208	2	Antisense	novelGene_ENSMUSG00000118132.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	113	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGTTCTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	4017961	4093540	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_4017998_4093368
ES_00028240	chr19	+	1992	10	FSM	ENSMUSG00000075296.6	ENSMUST00000143380.3	2142	10	150	0	150	0	multi-exon	TRUE	canonical	1	2	junction_3	1.85259244450367	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTCAGGGAGAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	4022477	4031646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4022614_4027498_4027662_4028060_4028172_4028413_4028535_4028652_4028739_4028850_4028933_4029229_4029617_4030005_4030173_4030691_4030792_4031007
ES_00028241	chr19	+	756	5	FSM	ENSMUSG00000024866.11	ENSMUST00000236224.2	708	5	-48	0	-48	0	multi-exon	FALSE	canonical	3	6	junction_1	9.98436277385793	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCTGACGGGTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	4036521	4038231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4036612_4036827_4036952_4037050_4037306_4037730_4037924_4038137
ES_00028242	chr19	+	1203	7	FSM	ENSMUSG00000024866.11	ENSMUST00000235612.2	1142	7	-61	0	-48	0	multi-exon	FALSE	canonical	1	7	junction_1	13.4752860204648	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036521	4040005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4036612_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ES_00028243	chr19	+	1284	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036569	4040005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ES_00028244	chr19	+	1266	8	NIC	ENSMUSG00000024866.11	novel	1284	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	12.795088343356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACAGTTCTTGTTCTTTG	NA	False	NA	5	True	TATAAA	-19	NA	4036584	4040007	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_4036612_4036827_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ES_00028245	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3513	False	NA	9	True	ATTAAA	-18	NA	4050579	4052103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
ES_00028246	chr19	+	1654	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	-567	2	-348	0	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	4183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTCTGTGTGTGGTT	6528	False	NA	34	True	AATAAA	-23	NA	4146833	4149017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
ES_00028247	chr19	+	1418	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	-345	7	-345	0	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	6531	False	NA	27	True	AATAAA	-16	NA	4146836	4149010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ES_00028248	chr19	+	844	4	FSM	ENSMUSG00000024856.11	ENSMUST00000174799.2	843	4	-1	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	272.140078309356	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7095	False	NA	27	True	AATAAA	-16	NA	4147400	4149010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
ES_00028249	chr19	+	614	3	FSM	ENSMUSG00000024851.15	ENSMUST00000126620.3	656	3	42	0	42	0	multi-exon	FALSE	canonical	3	5	junction_2	1	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCAGCAGGTATCTGGG	4245	False	NA	NA	False	NA	NA	NA	4160841	4162014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4161190_4161581_4161699_4161865
ES_00028250	chr19	+	610	2	FSM	ENSMUSG00000024851.15	ENSMUST00000125596.2	1038	2	428	0	428	0	multi-exon	FALSE	canonical	3	8	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGGCCTTCCTGTCTGG	6151	False	NA	NA	False	AATAAA	-14	NA	4162747	4163965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4162877_4163484
ES_00028251	chr19	+	920	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	-47	1	8	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4353	False	NA	NA	False	AATAAA	-15	NA	4175941	4181725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ES_00028252	chr19	+	1029	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	-17	0	8	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4353	False	NA	NA	False	AATAAA	-15	NA	4175941	4181725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
ES_00028253	chr19	+	955	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	-17	0	8	0	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4353	False	NA	NA	False	AATAAA	-16	NA	4175941	4181726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ES_00028254	chr19	+	1633	6	FSM	ENSMUSG00000024845.20	ENSMUST00000130619.11	1615	6	-18	0	8	0	multi-exon	FALSE	canonical	3	568	junction_2	76.3952878127964	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACCGAGAATCTTT	4353	False	NA	NA	False	AATAAA	-8	NA	4175941	4182284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181029_4181075_4181227_4181282_4181360
ES_00028255	chr19	+	1485	6	FSM	ENSMUSG00000024845.20	ENSMUST00000169055.10	1476	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	226	junction_4	186.716255318063	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACCGAGAATCTTT	4336	False	NA	NA	False	AATAAA	-8	NA	4175924	4182284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ES_00028257	chr19	+	986	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	-49	0	-4	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4341	False	NA	NA	False	AATAAA	-24	NA	4175929	4181734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ES_00028259	chr19	+	1900	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	-12	0	-12	0	multi-exon	TRUE	canonical	3	251	junction_1	114.751906302248	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3563	False	NA	18	True	AATAAA	-19	NA	4198605	4204034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ES_00028260	chr19	+	1636	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	1	-63	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	140.317354593079	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTCTGTGGCAGGTCA	3589	False	NA	NA	False	NA	NA	NA	4198631	4203810	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_4198722_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ES_00028261	chr19	+	1643	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	1	-63	combination_of_known_junctions	FALSE	canonical	3	402	junction_1	75.9439925208044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTCTGTGGCAGGTCA	3589	False	NA	NA	False	NA	NA	NA	4198631	4203810	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ES_00028264	chr19	+	1463	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	10	0	10	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3287	False	NA	31	True	AATAAA	-20	NA	4242073	4245419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ES_00028267	chr19	+	4081	21	FSM	ENSMUSG00000024892.18	ENSMUST00000224726.3	4061	21	-20	0	-6	0	multi-exon	FALSE	canonical	3	75	junction_8	10.9748576300561	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTCATGTACAGTCTAC	1681	False	NA	10	True	AATAAA	-25	NA	4560493	4671707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4560610_4565681_4565719_4651627_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
ES_00028270	chr19	+	8098	36	NIC	ENSMUSG00000067889.8	novel	953	5	NA	NA	3	5	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	9.77443562753035	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTTGCTTTCCTGACC	NA	False	NA	18	True	ATTAAA	-28	NA	4771109	4802393	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_4771561_4774107_4774260_4774657_4774832_4775928_4776021_4776167_4776249_4776609_4776726_4779089_4779203_4779329_4779518_4781301_4781420_4781953_4782113_4782415_4782719_4783681_4783836_4784066_4784938_4787369_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ES_00028271	chr19	+	5777	3	FSM	ENSMUSG00000033760.18	ENSMUST00000182821.8	1443	3	0	-4334	0	145	multi-exon	FALSE	canonical	3	52	junction_2	14.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACTCTTATGTGATTT	NA	False	NA	NA	False	NA	NA	NA	4806570	4817238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4806690_4807273_4807698_4812004
ES_00028274	chr19	+	1807	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	-24	0	4	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4806574	4815968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
ES_00028275	chr19	+	1997	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	-22	5	-22	2	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTGTGGTGTAAGTGCT	NA	False	NA	5	True	AATAAA	-16	NA	4905135	4910941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ES_00028277	chr19	+	3628	2	FSM	ENSMUSG00000006463.14	ENSMUST00000162754.2	939	2	-1076	-1613	1	0	multi-exon	FALSE	canonical	3	165	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928718	4935423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4930427_4933503
ES_00028280	chr19	+	2142	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	-4	907	-4	-907	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTATTTAGCCTTGGCTG	3539	False	NA	NA	False	NA	NA	NA	5012170	5016120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
ES_00028281	chr19	+	813	5	FSM	ENSMUSG00000024902.6	ENSMUST00000236917.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	253.71871728353	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCTCAGCTTCTCTCC	3744	False	NA	10	True	AATAAA	-13	NA	5012375	5014972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013718_5014701
ES_00028282	chr19	+	2619	12	FSM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.4311992290135	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGAGTGTTCACTTCT	4058	False	NA	21	True	ATTAAA	-22	NA	5073887	5082000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ES_00028283	chr19	+	2052	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	-20	0	-20	0	multi-exon	FALSE	canonical	3	75	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCTCTGTTACTCTC	182	False	NA	9	True	AATAAA	-16	NA	5088833	5091159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5090061_5090334
ES_00028296	chr19	+	1027	7	FSM	ENSMUSG00000024875.6	ENSMUST00000238093.2	1018	7	-9	0	-2	0	multi-exon	FALSE	canonical	2	3	junction_6	209.84657093537	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5138563	5142533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142329
ES_00028297	chr19	+	1496	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	-9	1	-2	-1	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTATTCATATTTTGT	NA	False	NA	NA	False	GGGGCT	-13	NA	5138563	5142908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ES_00028301	chr19	+	2556	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	0	0	0	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	1792	False	NA	23	True	AATAAA	-40	NA	5416768	5421554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ES_00028304	chr19	+	1550	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	-22	0	-22	0	multi-exon	FALSE	canonical	3	164	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	225	False	NA	34	True	AATAAA	-35	NA	5475149	5477341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5475337_5475978
ES_00028305	chr19	+	1570	2	FSM	ENSMUSG00000047423.11	ENSMUST00000054477.8	1529	2	-41	0	-28	0	multi-exon	FALSE	canonical	3	21	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	219	False	NA	34	True	AATAAA	-35	NA	5475143	5477341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5475337_5475964
ES_00028310	chr19	+	1637	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	-80	0	-80	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524635	5531881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ES_00028312	chr19	+	2354	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	0	0	0	0	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	5540482	5545229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
ES_00028315	chr19	+	771	3	FSM	ENSMUSG00000024925.12	ENSMUST00000155639.2	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	34.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCCTGAGTCTGTGGG	5147	False	NA	2	True	AATAAA	-11	NA	5652002	5652960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5652109_5652220_5652403_5652477
ES_00028318	chr19	+	441	3	FSM	ENSMUSG00000004054.10	ENSMUST00000235727.2	441	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	11	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCAGTGGGCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	5738769	5740032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5738859_5739504_5739541_5739716
ES_00028319	chr19	+	3756	12	NIC	ENSMUSG00000004054.10	novel	2885	11	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	20.4999496068721	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAATGTCACCTTTCTTG	NA	False	NA	9	True	AATAAA	-21	NA	5738769	5752892	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_5738859_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ES_00028320	chr19	+	3897	12	FSM	ENSMUSG00000004054.10	ENSMUST00000004156.10	3898	12	0	1	0	-1	multi-exon	FALSE	canonical	3	4	junction_1	25.7338571721901	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAATGTCACCTTTCTTG	NA	False	NA	9	True	AATAAA	-21	NA	5739064	5752892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5739295_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ES_00028321	chr19	+	670	2	FSM	ENSMUSG00000004054.10	ENSMUST00000237032.2	670	2	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTCAGCCATGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	5739161	5740007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5739541_5739716
ES_00028322	chr19	+	2037	9	FSM	ENSMUSG00000024940.12	ENSMUST00000235336.2	2099	9	62	0	62	0	multi-exon	FALSE	canonical	2	4	junction_1	1.36358901432946	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGGTTGGAAGCCCAG	1383	False	NA	NA	False	AATAAA	-21	NA	5805151	5808560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5805703_5805959_5806128_5806274_5806359_5806611_5806741_5806821_5806960_5807338_5807501_5807574_5807656_5807738_5807871_5807968
ES_00028330	chr19	+	872	4	FSM	ENSMUSG00000038274.14	ENSMUST00000236976.2	744	4	-128	0	-18	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	964	False	NA	4	True	AATAAA	-16	NA	6107855	6109549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ES_00028331	chr19	+	505	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236217.2	503	5	-2	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6188.20864628852	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1105	False	NA	4	True	AATAAA	-16	NA	6107996	6109549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6108032_6108257_6108356_6108457_6108603_6109173_6109230_6109378
ES_00028339	chr19	+	5613	36	FSM	ENSMUSG00000024773.16	ENSMUST00000145600.2	5613	36	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_22	23.3502174092925	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGCCACGTCCAGGTC	1058	False	NA	15	True	AATAAA	-15	NA	6295494	6312325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735_6301894_6302456_6302608_6302719_6302914_6303017_6303099_6303363_6303471_6303553_6303647_6304388_6304460_6304619_6304697_6305130_6305302_6305438_6305569_6305648_6305858_6306197_6306407_6306581_6306718_6307468_6307673_6307806_6307909_6307992_6308075_6308163_6308297_6308390_6308464_6308580_6308664_6308893_6309016_6310018_6310174_6311401_6311555_6311630
ES_00028341	chr19	+	5896	37	FSM	ENSMUSG00000024769.8	ENSMUST00000025681.8	5995	37	97	2	97	-2	multi-exon	TRUE	canonical	1	1	junction_14	6.99001713203715	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGCTTCCCTGCCTAGG	NA	False	NA	6	True	AATAAA	-16	NA	6356582	6375680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6356906_6359155_6359248_6359328_6359413_6359756_6359853_6360247_6360397_6360824_6360919_6361051_6361253_6361351_6361601_6362147_6362228_6363248_6363347_6363444_6363526_6363718_6363826_6363920_6364101_6364314_6364396_6364525_6364648_6364734_6364811_6365019_6365127_6365201_6365317_6365668_6365818_6365893_6365983_6366228_6366282_6366370_6366470_6366548_6366609_6366858_6366965_6367190_6367325_6367404_6367545_6367633_6367716_6368387_6368605_6370108_6370172_6370272_6370873_6371686_6371785_6371856_6371942_6372056_6372178_6372283_6372402_6372584_6372709_6372822_6372912_6374546
ES_00028342	chr19	+	2706	10	FSM	ENSMUSG00000024947.18	ENSMUST00000113502.10	2652	10	-54	0	-54	0	multi-exon	TRUE	canonical	3	66	junction_1	106.997403914508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAGAGAGATGTAT	500	False	NA	12	True	GATAAA	-12	NA	6384954	6390910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6385101_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ES_00028344	chr19	+	2975	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_3	26.9153766460735	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	614	False	NA	21	True	GATAAA	-21	NA	6385068	6390919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ES_00028347	chr19	+	4367	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	-14	0	-14	0	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCATCCTCTGGTCT	588	False	NA	22	True	AATAAA	-14	NA	6413705	6428060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
ES_00028348	chr19	+	965	2	FSM	ENSMUSG00000024949.18	ENSMUST00000131083.8	489	2	0	-476	0	476	multi-exon	FALSE	canonical	3	1212	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATAATAAATGGAAGTTTT	834	False	NA	NA	False	ATTAAA	-26	NA	6413951	6416461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6414149_6415693
ES_00028349	chr19	+	2649	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
ES_00028354	chr19	+	626	5	NIC	ENSMUSG00000032946.17	novel	2124	4	NA	NA	-11	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	104.357558422953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449882	6453668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453060_6453117_6453461
ES_00028355	chr19	+	653	5	FSM	ENSMUSG00000032946.17	ENSMUST00000150713.8	453	5	-40	-160	-36	0	multi-exon	TRUE	canonical	0	0	junction_3	119.445332684036	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449857	6453668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6449995_6451750_6451894_6452501_6452605_6453053_6453117_6453461
ES_00028357	chr19	+	614	5	NIC	ENSMUSG00000032946.17	novel	2124	4	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	104.357558422953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449901	6453668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453053_6453117_6453461
ES_00028359	chr19	+	1763	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113472.8	2124	4	361	0	-53	0	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6450503	6453668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
ES_00028360	chr19	+	919	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6458434	6465241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ES_00028361	chr19	+	760	5	ISM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	4557	0	4557	0	3prime_fragment	FALSE	canonical	3	149	junction_1	9.57535900110278	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6462991	6465241	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ES_00028362	chr19	+	904	4	NIC	ENSMUSG00000032946.17	novel	919	7	NA	NA	4612	-1	intron_retention	FALSE	canonical	3	164	junction_1	5.65685424949238	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATCATCAGCCTAAAACC	NA	False	NA	18	True	AATAAA	-20	NA	6463046	6465239	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6463495_6463894_6464072_6464821_6464885_6465023
ES_00028364	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	TRUE	canonical	3	803	junction_1	23.6971634495683	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9314	False	NA	16	True	ATTAAA	-16	NA	6887114	6888396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ES_00028367	chr19	+	946	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	44	0	-19	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9365	False	NA	10	True	AATAAA	-15	NA	6919912	6929261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
ES_00028372	chr19	+	971	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	1	0	1	0	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973499	6976412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ES_00028373	chr19	+	1106	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	-3	0	-3	0	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973536	6976414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ES_00028374	chr19	+	1023	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	14.8174071805952	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973569	6976412	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976073_6976137_6976259
ES_00028375	chr19	+	1273	10	NIC	ENSMUSG00000036278.8	novel	1228	11	NA	NA	-75	5	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	15.0185071014251	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGGGTCTGGCTGGGT	8457	False	NA	11	True	AATAAA	-21	NA	7034102	7175427	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175277
ES_00028376	chr19	+	1228	11	FSM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	10.4383906805599	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	8532	False	NA	6	True	AATAAA	-16	NA	7034177	7175422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
ES_00028379	chr19	+	222	2	Intergenic	novelGene_2059	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	16	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGAGAGAGAGAGAGA	8198	False	NA	NA	False	NA	NA	NA	7230071	7321453	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7230135_7321294
ES_00028382	chr19	+	376	1	FSM	ENSMUSG00000099923.3	ENSMUST00000186160.3	1025	1	135	514	135	-514	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCAGTCCCGCCTCCAGAC	NA	False	NA	NA	False	NA	NA	NA	7360036	7360412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7360000_7360400
ES_00028383	chr19	+	874	2	Antisense	novelGene_ENSMUSG00000095690.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	33	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAGGGCTACCCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	7374807	7379221	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_7375631_7379170
ES_00028384	chr19	+	4993	5	FSM	ENSMUSG00000053080.11	ENSMUST00000159348.3	4989	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	16	junction_1	19.3713706278105	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTGTGTTTTTTATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	7394985	7403269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7395283_7397431_7397927_7398619_7399010_7399278_7399828_7400007
ES_00028387	chr19	+	4976	2	ISM	ENSMUSG00000053080.11	ENSMUST00000160561.3	4064	3	-368	-364	241	0	intron_retention	FALSE	canonical	3	69	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTGTGTTTTTTATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	7398024	7403269	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_7399010_7399278
ES_00028390	chr19	+	7442	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	0	-3074	0	0	multi-exon	TRUE	canonical	3	31	junction_6	6.18409698788397	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTCCTCATTCTTTAA	NA	False	NA	NA	False	AGTAAA	-19	NA	7471802	7517039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
ES_00028392	chr19	+	2350	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	0	-449	0	449	multi-exon	TRUE	canonical	3	44	junction_1	71.8135606971274	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCGTGAATTCTTGGCCA	NA	False	NA	NA	False	NA	NA	NA	7534849	7564525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ES_00028396	chr19	+	721	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205909.2	709	9	-12	0	-12	0	multi-exon	FALSE	canonical	3	781	junction_1	124.260814418706	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701356	8703807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ES_00028399	chr19	+	755	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	-11	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701510	8703807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ES_00028400	chr19	+	855	5	FSM	ENSMUSG00000108414.2	ENSMUST00000206462.2	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_1	85.4469864886995	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702026	8703807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8702086_8702377_8702888_8703145_8703191_8703430_8703467_8703602
ES_00028401	chr19	+	510	6	FSM	ENSMUSG00000108414.2	ENSMUST00000205852.2	510	6	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_1	74.1145060025364	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702260	8703807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ES_00028402	chr19	+	490	5	FSM	ENSMUSG00000108414.2	ENSMUST00000206255.2	478	5	-12	0	-12	0	multi-exon	FALSE	canonical	3	1003	junction_1	60.01822639832	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702455	8703807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ES_00028406	chr19	+	1078	11	FSM	ENSMUSG00000042729.12	ENSMUST00000210512.2	1078	11	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_5	341.044410597799	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATCCTGGACCTTTTG	963	False	NA	22	True	AATAAA	-15	NA	8713190	8717982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715227_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
ES_00028413	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6939	False	NA	12	True	NA	NA	NA	8719166	8733006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ES_00028414	chr19	+	2010	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6942	False	NA	12	True	NA	NA	NA	8719169	8733006	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ES_00028415	chr19	+	670	5	FSM	ENSMUSG00000010110.18	ENSMUST00000176182.8	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	4.92442890089805	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCTGAACCCTCCTCC	-1	True	NA	NA	False	NA	NA	NA	8725866	8732422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ES_00028417	chr19	+	4042	20	FSM	ENSMUSG00000010097.16	ENSMUST00000184970.9	4042	20	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	65.017278760312	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTTGTGTCCCATTACT	8603	False	NA	32	True	GATAAA	-11	NA	8734470	8748271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
ES_00028420	chr19	+	2077	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	-73	0	-73	0	multi-exon	FALSE	canonical	3	20	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5355	False	NA	12	True	CATAAA	-17	NA	8779845	8782210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8780050_8780337
ES_00028423	chr19	+	1795	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8816691	8826030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ES_00028425	chr19	+	1388	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817882	8826030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ES_00028428	chr19	+	1033	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTATATGCCTGGCTC	5912	False	NA	25	True	AATAAA	-13	NA	8848922	8853020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ES_00028430	chr19	+	1127	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	6013	False	NA	33	True	AATAAA	-21	NA	8849023	8853028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ES_00028432	chr19	+	806	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAACATTTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	8866216	8868245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ES_00028433	chr19	+	784	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866262	8868110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8866613_8867366_8867465_8867774
ES_00028435	chr19	+	843	4	FSM	ENSMUSG00000071653.10	ENSMUST00000190843.2	830	4	-13	0	-3	0	multi-exon	FALSE	canonical	3	137	junction_1	1438.49141657347	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	27	True	AATAAA	-16	NA	8866289	8868105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8866613_8867000_8867092_8867366_8867465_8867774
ES_00028438	chr19	+	3794	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	-6	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1893	False	NA	-56	True	GATAAA	-42	NA	8875464	8894036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ES_00028441	chr19	+	3482	22	FSM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	-504	0	-163	0	multi-exon	FALSE	canonical	3	39	junction_2	11.2769706937285	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	1752	False	NA	6	True	AATAAA	-14	NA	8906752	8918946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8907317_8908162_8908335_8908410_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ES_00028442	chr19	+	3322	22	FSM	ENSMUSG00000071647.6	ENSMUST00000096241.6	3322	22	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.0183155765295	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	1915	False	NA	6	True	AATAAA	-14	NA	8906915	8918946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ES_00028455	chr19	+	18115	5	FSM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	-15	0	-15	0	multi-exon	FALSE	canonical	3	15	junction_4	26.3853652618265	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATCGTGCTCTTGTATTC	NA	False	NA	6	True	AATAAA	-19	NA	8966632	8996560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_8979062
ES_00028467	chr19	+	5124	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	22	0	21	0	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTAGGGATTTTTTTT	3989	False	NA	NA	False	NA	NA	NA	9995578	10015741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ES_00028470	chr19	+	3475	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	-15	0	-15	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160236	10174238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ES_00028471	chr19	+	934	6	FSM	ENSMUSG00000010663.6	ENSMUST00000235515.2	934	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	313.49194567006	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTCAGCCTGGGGGC	NA	False	NA	NA	False	NA	NA	NA	10160402	10168864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10160629_10162290_10162402_10162941_10163247_10163741_10163844_10164118_10164248_10168803
ES_00028473	chr19	+	426	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	174	6	-30	0	multi-exon	FALSE	canonical	3	2797	junction_1	495.826806679734	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4151	False	NA	27	True	AATAAA	-16	NA	10181551	10185182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
ES_00028474	chr19	+	807	5	FSM	ENSMUSG00000036372.15	ENSMUST00000153854.8	981	5	174	0	-30	0	multi-exon	FALSE	canonical	3	12	junction_1	1802.63896829066	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	4151	False	NA	33	True	AATAAA	-22	NA	10181551	10185188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10181629_10183113_10183489_10183787_10183898_10184527_10184665_10185080
ES_00028478	chr19	+	3698	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-39	82	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	81.5971200472174	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCATTGAATAGATTTG	NA	False	NA	18	True	AATAAA	-23	NA	10502590	10525099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ES_00028482	chr19	+	3640	11	FSM	ENSMUSG00000034820.5	ENSMUST00000236206.2	3315	11	8	-333	8	82	multi-exon	FALSE	canonical	3	29	junction_4	86.2092802429066	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCATTGAATAGATTTG	NA	False	NA	18	True	AATAAA	-23	NA	10502637	10525099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ES_00028483	chr19	+	3555	10	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	0	82	combination_of_known_junctions	FALSE	canonical	3	71	junction_5	59.2792096047006	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCATTGAATAGATTTG	NA	False	NA	18	True	AATAAA	-23	NA	10502629	10525099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ES_00028484	chr19	+	3621	12	NNC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	105.918883667434	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTATACTGCATTGT	NA	False	NA	16	True	AATAAA	-16	NA	10502665	10525017	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510389_10510497_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ES_00028489	chr19	+	2510	7	NIC	ENSMUSG00000034445.9	novel	2634	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	29.2845237853262	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554535	10567186	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_10554928_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ES_00028490	chr19	+	3130	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554535	10567193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ES_00028491	chr19	+	2634	9	FSM	ENSMUSG00000034445.9	ENSMUST00000237581.2	2634	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	28.8693176226942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554854	10567186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10554928_10555097_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ES_00028492	chr19	+	4459	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	0	0	0	0	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTATTGGTCTCTGC	370	False	NA	56	True	AATAAA	-16	NA	10582690	10607183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ES_00028493	chr19	+	992	3	FSM	ENSMUSG00000024740.11	ENSMUST00000237318.2	988	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	3390	junction_1	165.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTACATGAGCTGAGAAG	1381	False	NA	NA	False	NA	NA	NA	10583701	10585833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10584358_10585156_10585274_10585614
ES_00028495	chr19	+	1279	4	FSM	ENSMUSG00000024740.11	ENSMUST00000236279.2	1279	4	0	0	0	0	multi-exon	FALSE	canonical	3	3022	junction_1	240.254032224227	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGAGACCTAGGAATGGG	NA	False	NA	NA	False	ACTAAA	-9	NA	10603966	10606698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10604127_10604489_10605229_10605788_10605913_10606442
ES_00028498	chr19	+	2708	5	FSM	ENSMUSG00000048832.10	ENSMUST00000235927.2	2690	5	-16	-2	0	1	multi-exon	TRUE	canonical	3	21	junction_1	43.0145324280062	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTCCATGATGAGTT	NA	False	NA	18	True	AATAAA	-21	NA	10666098	10691992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10666348_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ES_00028500	chr19	+	6035	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTGTGGTATGTGCCC	NA	False	NA	NA	False	AATAAA	-22	NA	10872777	10886923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ES_00028504	chr19	+	2981	3	FSM	ENSMUSG00000024683.7	ENSMUST00000237728.2	2981	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	27	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGGGTACAACTTCTCT	182	False	NA	25	True	ATTAAA	-13	NA	11747775	11752157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_11747889_11748165_11750388_11751511
ES_00028509	chr19	+	1522	1	FSM	ENSMUSG00000112693.2	ENSMUST00000220222.2	1522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	664	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGATCCTGAGGTCCAG	NA	False	NA	NA	False	GGGGCT	-45	NA	12882683	12884205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_12882700_12884200
ES_00028510	chr19	+	5784	7	FSM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	-140	0	-140	0	multi-exon	FALSE	canonical	3	23	junction_6	6.07590871118606	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGCTGCTCTTCTTAAAA	NA	False	NA	20	True	AATAAA	-24	NA	16110054	16364827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_16110826_16196951_16197137_16293380_16293536_16309440_16309570_16312344_16312475_16355520_16355675_16360567
ES_00028512	chr19	+	308	1	NIC	ENSMUSG00000046388.5	novel	552	3	NA	NA	132	-117	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCGCGGCCGGGAGCGAG	NA	False	NA	NA	False	NA	NA	NA	16758042	16758350	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_16758000_16758400
ES_00028517	chr19	+	929	6	FSM	ENSMUSG00000037847.15	ENSMUST00000161080.2	915	6	-14	0	-5	0	multi-exon	FALSE	canonical	1	1	junction_3	42.7364013459252	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTTTAATTATTGAAG	NA	False	NA	NA	False	NA	NA	NA	18609308	18618593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_18609446_18613442_18613507_18616281_18616764_18616881_18616973_18617249_18617299_18618487
ES_00028518	chr19	+	1980	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	-40	0	40	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTCAGTTGTCATTATT	NA	False	NA	NA	False	AATATA	-17	NA	18609313	18629832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
ES_00028522	chr19	+	2134	9	NNC	ENSMUSG00000024726.11	novel	4518	8	NA	NA	0	4085	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	420.054163174227	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAACAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	18648127	18688649	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_18648567_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383_18682153_18688621
ES_00028524	chr19	+	1631	2	FSM	ENSMUSG00000047044.8	ENSMUST00000055792.8	1631	2	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	9357	False	NA	26	True	AATAAA	-19	NA	18690599	18695792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_18691024_18694585
ES_00028525	chr19	+	7116	6	FSM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	0	269	0	-269	multi-exon	FALSE	canonical	3	349	junction_1	12.0166551086398	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTGAGCTGCACAGTGA	NA	False	NA	NA	False	NA	NA	NA	21249641	21263935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_21250107_21253789_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
ES_00028530	chr19	+	6709	24	FSM	ENSMUSG00000024754.14	ENSMUST00000025663.8	6602	24	0	-107	0	107	multi-exon	FALSE	canonical	3	56	junction_1	16.2129029807244	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGACCAGGTTTCATTG	NA	False	NA	NA	False	NA	NA	NA	21755721	21835831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_21756151_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ES_00028533	chr19	+	5258	3	Intergenic	novelGene_2086	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	205	junction_2	1611.5	618	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGCTGAGTAAAGGGGTA	1095	False	NA	NA	False	NA	NA	NA	22699753	22705272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_22700550_22700763_22704821_22704867
ES_00028534	chr19	+	5224	2	Intergenic	novelGene_2088	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGTAGCTGAGTAAAGGG	1173	False	NA	NA	False	NA	NA	NA	22699831	22705269	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_22700550_22700763
ES_00028536	chr19	+	414	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAACATCGCTAG	NA	False	NA	NA	False	NA	NA	NA	23112263	23113081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_23112319_23112722
ES_00028543	chr19	+	220	2	Intergenic	novelGene_2097	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	114	junction_1	0	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAATTTGAGGCCTCGG	5799	False	NA	NA	False	NA	NA	NA	25180883	25188225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_25180936_25188057
ES_00028544	chr19	+	5637	14	FSM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	16.8104644783043	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214338	25411860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_25214682_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ES_00028549	chr19	+	5886	34	FSM	ENSMUSG00000024921.18	ENSMUST00000176030.8	5862	34	-24	0	-24	0	multi-exon	FALSE	canonical	2	6	junction_1	7.73172777101398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGGTGTTGGTACTTT	NA	False	NA	17	True	AATAAA	-18	NA	26582494	26755675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_26582634_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26737277_26737332_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ES_00028550	chr19	+	5878	33	FSM	ENSMUSG00000024921.18	ENSMUST00000025862.15	5921	33	43	0	-24	0	multi-exon	FALSE	canonical	2	6	junction_1	7.35245494715881	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCGCCTTTTCTTTTA	NA	False	NA	63	True	AATAAA	-18	NA	26582494	26755721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_26582634_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ES_00028553	chr19	+	7966	19	FSM	ENSMUSG00000024924.15	ENSMUST00000167487.8	7971	19	0	5	0	-5	multi-exon	FALSE	canonical	3	7	junction_15	10.2837820299492	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGCAAAGTCTACTTTT	NA	False	NA	8	True	AATAAA	-19	NA	27194756	27231626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27223992_27224077_27224409_27224491_27225256_27225427_27226504
ES_00028557	chr19	+	4151	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	-20	-52	-20	52	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATTCTATCTTTAGTT	3801	False	NA	NA	False	GATAAA	-3	NA	28967731	28993223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
ES_00028558	chr19	+	5194	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	-15	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTAGTTATGATTTTGTC	3954	False	NA	11	True	AATAAA	-22	NA	28967884	28997637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
ES_00028563	chr19	+	645	1	FSM	ENSMUSG00000068466.7	ENSMUST00000084171.7	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGGTTCTAGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	29137517	29138162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_29137500_29138200
ES_00028565	chr19	+	5023	25	FSM	ENSMUSG00000024789.14	ENSMUST00000065796.10	5030	25	0	7	0	-7	multi-exon	FALSE	canonical	3	14	junction_12	5.21749194749951	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGGTAATTTGTTTAAA	NA	False	NA	NA	False	AATAAA	-38	NA	29229227	29290473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_29229519_29229836_29229920_29239582_29239834_29248750_29248875_29252401_29252520_29254149_29254296_29259716_29260039_29260941_29261062_29262236_29262395_29263700_29263813_29265300_29265488_29266073_29266202_29268566_29268702_29272255_29272344_29273041_29273170_29273909_29274049_29275692_29275845_29275987_29276139_29276878_29277016_29278308_29278499_29279011_29279137_29279298_29279472_29286994_29287113_29288327_29288442_29289140
ES_00028571	chr19	+	3624	16	FSM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	-88	0	-88	0	multi-exon	FALSE	canonical	3	216	junction_4	27.709124048868	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACGCATCCAGCTTT	3997	False	NA	25	True	AATAAA	-15	NA	30007824	30071122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_30008332_30016463_30016698_30033634_30033895_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
ES_00028575	chr19	+	1567	1	FSM	ENSMUSG00000118106.2	ENSMUST00000235511.2	2276	1	0	709	0	-709	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGCCGAGCATCCTG	NA	False	NA	NA	False	NA	NA	NA	32463322	32464889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_32463300_32464900
ES_00028579	chr19	+	2048	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	-24	0	-24	0	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169604	34217733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ES_00028580	chr19	+	5485	31	NIC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	97	junction_15	72.6510763092254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	NA	False	NA	2	True	AATAAA	-13	NA	34899736	34953134	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
ES_00028581	chr19	+	5366	31	NIC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_1	66.7043226985078	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGGTGTACTTTATAAGG	NA	False	NA	3	True	AATAAA	-14	NA	34899736	34953135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
ES_00028582	chr19	+	5596	32	FSM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-24	-8	-24	0	multi-exon	FALSE	canonical	3	97	junction_15	68.2854387453211	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTATAAGGCTCTTAAA	NA	False	NA	11	True	AATAAA	-22	NA	34899736	34953143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ES_00028583	chr19	+	5423	32	FSM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	62.1311593110583	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAAGGCTCTTAAACT	NA	False	NA	13	True	AATAAA	-24	NA	34899791	34953145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ES_00028586	chr19	+	2065	3	FSM	ENSMUSG00000024795.12	ENSMUST00000224381.2	675	3	-1390	0	1258	0	multi-exon	FALSE	canonical	3	341	junction_2	9	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTATAAGGCTCTTAAA	NA	False	NA	11	True	AATAAA	-22	NA	34948738	34953143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34950410_34951827_34951971_34952892
ES_00028590	chr19	+	1566	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	19.6580136331217	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ES_00028591	chr19	+	1715	10	FSM	ENSMUSG00000024805.17	ENSMUST00000225411.2	1626	10	-89	0	-89	0	multi-exon	FALSE	canonical	3	44	junction_8	28.4843470118477	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387058	36433592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
ES_00028592	chr19	+	4748	21	FSM	ENSMUSG00000041180.14	ENSMUST00000047247.12	4731	21	-23	6	7	-3	multi-exon	FALSE	canonical	3	10	junction_10	6.40683229060977	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCTTCAGTTCATTTT	NA	False	NA	6	True	ATTAAA	-13	NA	36532045	36598529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765_36564831_36572608_36572655_36574476_36574587_36576286_36576436_36576995_36577120_36578831_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ES_00028605	chr19	+	2541	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043469	38062869	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00028606	chr19	+	2519	10	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043469	38062871	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00028608	chr19	+	2762	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	-5	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043484	38062869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00028609	chr19	+	2442	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043484	38062871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00028610	chr19	+	2966	10	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	0	316	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	109.160432391962	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGACTCCTAATATCTT	NA	False	NA	NA	False	AATAAA	-23	NA	38043484	38063187	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_38043766_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00028611	chr19	+	2396	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_9	128.910630350192	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043499	38062871	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
ES_00028612	chr19	+	2902	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-464	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38042994	38062869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00028620	chr19	+	9439	32	FSM	ENSMUSG00000024998.18	ENSMUST00000169713.9	9439	32	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	4.96145391734978	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGCGCCCACCACCATT	NA	False	NA	NA	False	AATAAA	-16	NA	38512640	38773474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_38513897_38608886_38609176_38640238_38640556_38686893_38687040_38690263_38690523_38693683_38693890_38705007_38705684_38707999_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
ES_00028625	chr19	+	689	8	FSM	ENSMUSG00000025001.12	ENSMUST00000145051.2	689	8	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_1	565.44012115541	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTAGAAGGCATGGAATG	NA	False	NA	NA	False	NA	NA	NA	38919617	38932358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_38919663_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157
ES_00028631	chr19	+	6858	5	FSM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	-18	0	-18	0	multi-exon	FALSE	canonical	3	75	junction_1	19.3196790863617	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTCTTCTTTTTTTTAA	NA	False	NA	45	True	ATTAAA	-22	NA	40883130	40906391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_40883235_40885527_40885610_40896502_40896648_40899476_40899554_40899941
ES_00028632	chr19	+	6671	4	NIC	ENSMUSG00000049164.8	novel	6840	5	NA	NA	19	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	45.7019328548221	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGAGTTTCTTCTTTTT	NA	False	NA	40	True	ATTAAA	-17	NA	40883167	40906386	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_40883235_40885527_40885610_40899476_40899554_40899941
ES_00028634	chr19	+	6411	8	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	23	793	intron_retention	FALSE	canonical	3	26	junction_7	29.110626434836	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGACTCTTGTTTTC	NA	False	NA	8	True	NA	NA	NA	41471098	41575768	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41570216
ES_00028638	chr19	+	1869	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	4130	False	NA	9	True	AATAAA	-15	NA	41921919	41932534	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ES_00028639	chr19	+	1561	10	FSM	ENSMUSG00000025157.9	ENSMUST00000225968.2	1561	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	175.05477097042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	8317	False	NA	9	True	AATAAA	-15	NA	41926106	41932534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ES_00028642	chr19	+	2299	4	FSM	ENSMUSG00000025157.9	ENSMUST00000223768.2	1121	4	-849	-329	695	0	multi-exon	FALSE	canonical	3	425	junction_2	14.7648230602334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	9804	False	NA	18	True	AATAAA	-24	NA	41927593	41932543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_41929175_41929954_41930079_41930374_41930446_41932020
ES_00028645	chr19	+	4291	8	FSM	ENSMUSG00000025178.10	ENSMUST00000235988.2	4267	8	-24	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	29.3445402215868	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACCTCTCTGTCCAGT	NA	False	NA	13	True	TTTAAA	-31	NA	42078908	42110464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42104458_42104945_42105006_42108231
ES_00028646	chr19	+	1997	10	FSM	ENSMUSG00000025178.10	ENSMUST00000235932.2	1939	10	-58	0	-58	0	multi-exon	FALSE	canonical	3	49	junction_9	126.842081267405	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGTCCAGTTTCCTT	NA	False	NA	19	True	TTTAAA	-37	NA	42078850	42110470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231_42108424_42110033
ES_00028648	chr19	+	3066	3	NNC	ENSMUSG00000044345.10	novel	3066	2	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	44	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGGTCTCACGGCCTG	NA	False	NA	29	True	AATAAA	-21	NA	42135815	42140142	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_42135928_42135950_42137999_42139236
ES_00028653	chr19	+	2678	12	NIC	ENSMUSG00000018820.14	novel	5611	13	NA	NA	5	-7	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATGGTTTTGTCAG	NA	False	NA	0	True	AATAAA	-7	NA	42159037	42180149	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ES_00028655	chr19	+	2680	12	NNC	ENSMUSG00000018820.14	novel	2573	12	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_8	45.1729459004205	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159039	42180156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174246_42174389_42177635_42177683_42177960_42178043_42178821
ES_00028663	chr19	+	1818	9	FSM	ENSMUSG00000025192.14	ENSMUST00000144314.2	1829	9	0	11	0	-11	multi-exon	FALSE	canonical	2	6	junction_1	3.11247489949718	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTGAGGAAGATACATAAA	2807	False	NA	NA	False	ATTAAA	-22	NA	43678278	43711002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187
ES_00028664	chr19	+	1275	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	22	1	22	-1	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTGTTATAGTCTCAG	9194	False	NA	8	True	AATAAA	-11	NA	43741456	43757069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
ES_00028665	chr19	+	1233	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGTCTCAGGTTCTTTC	9274	False	NA	16	True	AATAAA	-19	NA	43741536	43757077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
ES_00028668	chr19	+	551	3	Fusion	ENSMUSG00000118217.2_ENSMUSG00000025202.9	novel	3489	6	NA	NA	12154	-3755	multi-exon	FALSE	canonical	1	1	junction_2	5.5	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACATGTCTGACCTGAAA	587	False	NA	NA	False	NA	NA	NA	44203861	44246130	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr19_+_44204124_44222661_44222793_44245972
ES_00028676	chr19	+	4469	4	ISM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	818	0	-77	0	3prime_fragment	FALSE	canonical	3	153	junction_1	12.2836838484589	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	2476	False	NA	26	True	AATGAA	-19	NA	44994919	45001201	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_44997960_44998570_44998679_44998856_44998999_45000022
ES_00028677	chr19	+	3570	5	FSM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	-82	0	-82	0	multi-exon	FALSE	canonical	3	97	junction_1	30.3593066455741	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	2471	False	NA	26	True	AATGAA	-19	NA	44994914	45001201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_44996815_44997718_44997960_44998570_44998679_44998856_44998999_45000022
ES_00028679	chr19	+	2886	5	FSM	ENSMUSG00000035342.15	ENSMUST00000179108.9	2798	5	0	-88	0	88	multi-exon	FALSE	canonical	3	23	junction_1	54.407605166925	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCATGAGTTTTGAGGAAC	1587	False	NA	NA	False	NA	NA	NA	45003638	45015638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_45003753_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ES_00028680	chr19	+	2738	5	FSM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	-116	72	-60	0	multi-exon	FALSE	canonical	3	72	junction_1	34.0954542424646	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATTTAAAAAAAAAA	35	False	NA	NA	False	NA	NA	NA	45006534	45015469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_45006670_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ES_00028684	chr19	+	2192	14	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	3	92	junction_2	165.00869620261	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCAGAATCTCTCTTG	NA	False	NA	10	True	TATAAA	-12	NA	45352170	45517725	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_45352326_45411571_45411680_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ES_00028685	chr19	+	2086	14	FSM	ENSMUSG00000025217.16	ENSMUST00000111936.4	2064	14	-22	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	132.758623339525	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352249	45517728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ES_00028686	chr19	+	2188	15	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	79	junction_2	163.999393353781	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352189	45517728	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_45352326_45394983_45395026_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ES_00028688	chr19	+	1355	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	0	-2	0	2	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTAGCATGTTTCCCA	3692	False	NA	NA	False	ATTAAA	-21	NA	45549053	45566728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ES_00028691	chr19	+	5263	14	NIC	ENSMUSG00000055491.15	novel	5205	14	NA	NA	-25	0	combination_of_known_junctions	TRUE	canonical	3	90	junction_2	137.394090464891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCAGCGTGTCCTTTC	NA	False	NA	3	True	AATAAA	-15	NA	46044952	46061348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00028692	chr19	+	5232	14	NNC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_10	135.492177551011	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCAGCGTGTCCTTTC	NA	False	NA	3	True	AATAAA	-15	NA	46044977	46061348	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059963_46060025_46060140_46060263_46060621_46060774_46060987
ES_00028693	chr19	+	5269	14	FSM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	-23	0	-23	0	multi-exon	TRUE	canonical	3	236	junction_7	80.0611452719015	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCAGCGTGTCCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	46044954	46061350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00028694	chr19	+	5202	14	NIC	ENSMUSG00000055491.15	novel	5205	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	238	junction_7	79.6883723412051	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCAGCGTGTCCTTTC	NA	False	NA	3	True	AATAAA	-15	NA	46045022	46061348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00028695	chr19	+	5205	14	FSM	ENSMUSG00000055491.15	ENSMUST00000062322.11	5205	14	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	120.971168749579	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCAGCGTGTCCTTTC	NA	False	NA	3	True	AATAAA	-15	NA	46045022	46061348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00028696	chr19	+	5227	14	NIC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	156	junction_4	105.735071407002	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCAGCGTGTCCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	46044990	46061350	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00028699	chr19	+	3523	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	265.145819419344	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCAGAGTTATGTCGT	244	False	NA	13	True	AATAAA	-16	NA	46064408	46073969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ES_00028701	chr19	+	2978	13	FSM	ENSMUSG00000015176.12	ENSMUST00000225780.2	2978	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	314.758494281286	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCATGGTTGAGTCACT	215	False	NA	NA	False	NA	NA	NA	46064379	46073392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ES_00028702	chr19	+	3474	13	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	263.476899156053	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTTCAGAGTTATGTC	35	False	NA	11	True	AATAAA	-14	NA	46064458	46073967	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ES_00028706	chr19	+	3001	23	FSM	ENSMUSG00000025225.16	ENSMUST00000073116.13	2979	23	-22	0	-22	0	multi-exon	FALSE	canonical	3	47	junction_13	7.7085334275273	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46293160	46300461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
ES_00028707	chr19	+	3468	22	FSM	ENSMUSG00000025225.16	ENSMUST00000111881.4	3141	22	15	-342	15	-16	multi-exon	FALSE	canonical	3	47	junction_12	7.7415743094745	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACGAAAAAAAAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	46294149	46300808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
ES_00028711	chr19	+	2419	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6896622735489	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGTCTGTGCCGTGTGT	4253	False	NA	18	True	AGTAAA	-18	NA	46345373	46363696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
ES_00028716	chr19	+	4372	13	NNC	ENSMUSG00000025231.18	novel	4522	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	28	junction_12	20.5526086476199	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTGTGCTTCTTTCT	NA	False	NA	19	True	ATTAAA	-19	NA	46385464	46477243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293_46476755_46476774
ES_00028722	chr19	+	4071	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	-11	-160	-11	160	multi-exon	FALSE	canonical	3	65	junction_1	42.0898509804389	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGGAATTTCCCTCAAA	NA	False	NA	NA	False	NA	NA	NA	46587511	46645988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
ES_00028723	chr19	+	3912	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	-1	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	18.7666592658363	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAATCTCCTGCCGCTC	NA	False	NA	17	True	AATAAA	-18	NA	46587551	46645821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
ES_00028726	chr19	+	1719	9	FSM	ENSMUSG00000003559.9	ENSMUST00000237219.2	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_4	13.865424623862	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	6484	False	NA	34	True	AATAAA	-44	NA	46696406	46729538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ES_00028728	chr19	+	8296	7	FSM	ENSMUSG00000064105.14_ENSMUSG00000117814.2	ENSMUST00000077666.6	3051	7	-168	-5077	-160	0	multi-exon	FALSE	canonical	0	0	junction_3	45.4337123975383	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGTGTGTTCCCTCTT	NA	False	NA	NA	False	GATAAA	-23	NA	46749874	46871878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46865646_46865832_46866271
ES_00028729	chr19	+	4955	8	FSM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	39.1240830889495	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGATGAAGGACTTGAG	NA	False	NA	NA	False	NA	NA	NA	46750034	46868631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
ES_00028730	chr19	+	1364	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46142	-68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	43.6507474747231	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTATCGTTTCTTTCAT	NA	False	NA	16	True	AATAGA	-22	NA	46807956	46866733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
ES_00028733	chr19	+	3282	11	FSM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	-22	0	-22	0	multi-exon	FALSE	canonical	3	160	junction_3	39.3161544406367	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTGTACAAATTGAGTA	NA	False	NA	15	True	AATAAA	-27	NA	47056162	47071918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47068979_47069145_47070247_47070426_47070582_47070761_47070865
ES_00028736	chr19	+	3942	3	FSM	ENSMUSG00000006435.17	ENSMUST00000235326.2	4034	3	0	92	0	-92	multi-exon	FALSE	canonical	3	49	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGATGTGGCCGGGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	47167460	47231958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_47167991_47228240_47228483_47228788
ES_00028739	chr19	+	792	3	FSM	ENSMUSG00000025060.16	ENSMUST00000123816.2	792	3	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_2	7	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACAGACAATTGAACGGC	NA	False	NA	33	True	AAGAAA	-23	NA	47609108	47613793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_47609392_47610674_47611134_47613743
ES_00028743	chr19	+	4054	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	22.1124214791929	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGTATAATGGGGT	151	False	NA	8	True	AATAAA	-17	NA	53131404	53235518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
ES_00028744	chr19	+	380	4	FSM	ENSMUSG00000025026.16	ENSMUST00000237593.2	380	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	86.9827569119305	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCCTCATCCAAGAGCA	182	False	NA	NA	False	NA	NA	NA	53131435	53215039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_53131521_53191844_53191907_53205231_53205447_53215021
ES_00028746	chr19	+	2340	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGCTTTATGAT	4414	False	NA	NA	False	TTTAAA	-25	NA	53317843	53361585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ES_00028747	chr19	+	942	3	FSM	ENSMUSG00000025025.15	ENSMUST00000237837.2	939	3	-3	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	76	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGTATTTATTGGTGA	4459	False	NA	NA	False	TATAAA	-18	NA	53317888	53320992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_53318152_53319781_53319915_53320446
ES_00028756	chr19	+	3886	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3893	False	NA	21	True	TATAAA	-24	NA	53933271	54021562	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ES_00028757	chr19	+	3965	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3932	False	NA	21	True	TATAAA	-24	NA	53933310	54021562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ES_00028758	chr19	+	4166	9	NIC	ENSMUSG00000024976.15	novel	2976	7	NA	NA	4934	208	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	129.893947126107	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACTAACACACAAATACAT	8871	False	NA	74	True	NA	NA	NA	53938249	54021772	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_53938375_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ES_00028761	chr19	+	1599	4	FSM	ENSMUSG00000024983.11	ENSMUST00000226069.2	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	51.1620519091597	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCATGCATCTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	55304758	55355935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55354724
ES_00028762	chr19	+	3429	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-24	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTTTTAAATGTTCCG	NA	False	NA	45	True	ATTAAA	-15	NA	55304758	55614993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
ES_00028764	chr19	+	3054	12	FSM	ENSMUSG00000024985.21	ENSMUST00000111654.8	3059	12	0	5	0	-2	multi-exon	FALSE	canonical	2	5	junction_3	33.4972553458112	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGATTAAAAAAGAAAAAAAG	NA	False	NA	NA	False	AATGAA	-4	NA	55730315	55913666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55743445_55743515_55806195_55806298_55896854_55896988_55899010_55899102_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327
ES_00028775	chr19	+	3794	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAGTTCTTTGCAGTAAG	NA	False	NA	18	True	AATAAA	-18	NA	57441338	57479437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
ES_00028777	chr19	+	716	5	NNC	ENSMUSG00000025086.14	novel	2513	6	NA	NA	-5	-9801	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	89.3602260516389	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGGATTATCCTTGAC	NA	False	NA	NA	False	ATTAAA	-26	NA	57441383	57462257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57462023
ES_00028789	chr19	+	2327	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800048	60824665	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ES_00028793	chr19	-	5569	15	FSM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	8.84936294259626	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAGCTGAGGAGTACTC	NA	False	NA	NA	False	NA	NA	NA	3333017	3309075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3311636_3311974_3312145_3314810_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
ES_00028794	chr19	-	790	6	FSM	ENSMUSG00000024907.8	ENSMUST00000237521.2	788	6	-2	0	-2	0	multi-exon	FALSE	canonical	1	1	junction_2	1.72046505340853	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACTGTTTGGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	3464546	3459914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3460166_3461128_3461207_3461557_3461648_3463294_3463350_3464031_3464113_3464311
ES_00028795	chr19	-	4799	23	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	0	19	combination_of_known_junctions	FALSE	canonical	3	145	junction_22	86.8173369782787	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTTCTAATAGCCACATA	NA	False	NA	NA	False	AATAAA	-43	NA	3625720	3504908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
ES_00028796	chr19	-	4688	22	NIC	ENSMUSG00000024908.16	novel	4841	23	NA	NA	0	19	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	104.600590087781	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTTCTAATAGCCACATA	NA	False	NA	NA	False	AATAAA	-43	NA	3625696	3504908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
ES_00028797	chr19	-	4676	22	FSM	ENSMUSG00000024908.16	ENSMUST00000172362.3	4633	22	-33	-10	0	5	multi-exon	FALSE	canonical	2	8	junction_9	119.716123030186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGAGCCTTTTTGGGGTT	NA	False	NA	NA	False	AATAAA	-29	NA	3625749	3504922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
ES_00028798	chr19	-	4860	23	FSM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	0	-19	0	19	multi-exon	FALSE	canonical	3	106	junction_9	88.0225482945391	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTTCTAATAGCCACATA	NA	False	NA	NA	False	AATAAA	-43	NA	3625720	3504908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
ES_00028800	chr19	-	4976	24	FSM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	0	-24	0	19	multi-exon	FALSE	canonical	3	249	junction_9	67.9031613363524	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTTCTAATAGCCACATA	NA	False	NA	NA	False	AATAAA	-43	NA	3625749	3504908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
ES_00028803	chr19	-	5182	23	FSM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	0	-21	0	21	multi-exon	TRUE	canonical	2	72	junction_10	15.3130555220533	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATATTTGAGTATTGAG	7827	False	NA	21	True	TATAAA	-41	NA	3736556	3634806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243_3709641_3736354
ES_00028804	chr19	-	609	3	FSM	ENSMUSG00000118249.2	ENSMUST00000236650.2	571	3	-34	-4	-34	4	multi-exon	FALSE	canonical	1	1	junction_2	1	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTTGGTGGTATCTGTG	NA	False	NA	NA	False	NA	NA	NA	3758210	3739681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3740001_3756645_3756786_3758060
ES_00028805	chr19	-	626	1	FSM	ENSMUSG00000117779.2	ENSMUST00000236552.2	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTCTAGCCTCGATGCA	NA	False	NA	NA	False	NA	NA	NA	3872389	3871763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3871800_3872400
ES_00028806	chr19	-	251	1	Intergenic	novelGene_2028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCTAGCCTTTAACTCC	9935	False	NA	NA	False	NA	NA	NA	3904766	3904515	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_3904500_3904800
ES_00028807	chr19	-	273	2	Intergenic	novelGene_2029	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCTAGCCTTTAACTCC	717	False	NA	NA	False	NA	NA	NA	3917977	3904515	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_3904710_3917898
ES_00028808	chr19	-	2844	20	FSM	ENSMUSG00000001750.17	ENSMUST00000126070.9	3041	20	197	0	197	0	multi-exon	FALSE	canonical	0	0	junction_19	15.1306407031772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3956794	3946049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3956523
ES_00028809	chr19	-	2670	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	18	0	-3	0	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957115	3946049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ES_00028810	chr19	-	219	2	NNC	ENSMUSG00000001750.17	novel	568	2	NA	NA	879	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGAGTGGGACACAAGTA	NA	False	NA	NA	False	NA	NA	NA	3951144	3948263	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_3948284_3950945
ES_00028811	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	705.446824517782	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	False	NA	-1	True	CATAAA	-22	NA	3962488	3958862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
ES_00028812	chr19	-	983	7	FSM	ENSMUSG00000059734.8	ENSMUST00000075092.8	983	7	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_6	645.480290601933	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962734	3958866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962466
ES_00028813	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962774	3958866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
ES_00028814	chr19	-	977	7	FSM	ENSMUSG00000059734.8	ENSMUST00000235847.2	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	709.089557108268	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962734	3958869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962469
ES_00028815	chr19	-	1842	10	FSM	ENSMUSG00000024885.10	ENSMUST00000051803.8	1924	10	81	1	0	-1	multi-exon	FALSE	canonical	2	3	junction_9	3.58322566591047	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTACAGGTGTCTTGTCTT	NA	False	NA	NA	False	ATTAAA	-19	NA	3979727	3963491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3979695
ES_00028816	chr19	-	1542	11	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	39415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	432.756513526949	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAGAAAAAGA	6571	False	NA	NA	False	NA	NA	NA	4062661	4017968	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4017997_4057498_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ES_00028817	chr19	-	1037	1	FSM	ENSMUSG00000118132.2	ENSMUST00000235840.2	995	1	-214	172	-214	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGTGTGACTGTGAG	8706	False	NA	NA	False	AATAGA	-20	NA	4050756	4049719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4049700_4050800
ES_00028818	chr19	-	1637	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	22	2	22	-2	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCTGGAACTTTGCTTT	6448	False	NA	1	True	AATAAA	-28	NA	4062784	4057498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ES_00028821	chr19	-	759	5	FSM	ENSMUSG00000037916.15	ENSMUST00000133474.8	759	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	557.199694903003	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCCTTTCCAGCAGATG	6524	False	NA	NA	False	NA	NA	NA	4062708	4059366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4059534_4059825_4060010_4061101_4061273_4061345_4061425_4062550
ES_00028822	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087985	4085406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ES_00028824	chr19	-	806	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237893.2	806	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1359.76024234667	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4087977	4085410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087865
ES_00028825	chr19	-	748	7	Fusion	ENSMUSG00000038155.12_ENSMUSG00000060803.7	novel	806	7	NA	NA	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	1117.07859317656	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4092218	4085410	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr19_-_4085662_4085823_4085932_4086687_4086792_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ES_00028829	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	1368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092263	4090284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ES_00028833	chr19	-	791	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	-74	-9	49	9	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTTGTCCTTAATCCTAA	8999	False	NA	NA	False	NA	NA	NA	4109520	4107467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
ES_00028834	chr19	-	1109	5	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	1	-8	1	7	intron_retention	FALSE	canonical	3	57	junction_3	9.36416040016402	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCTTGTCCTTAATCCT	9225	False	NA	NA	False	NA	NA	NA	4109294	4107469	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734
ES_00028835	chr19	-	1291	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	87	0	19	0	multi-exon	FALSE	canonical	2	3	junction_6	105.801307490346	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9703	False	NA	-3	True	TATAAA	-35	NA	4175771	4164445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
ES_00028836	chr19	-	1330	7	NIC	ENSMUSG00000024847.16	novel	1378	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	105.062547508086	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9616	False	NA	-3	True	TATAAA	-35	NA	4175858	4164445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175777
ES_00028837	chr19	-	1273	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	6	-18	6	0	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	3908	False	NA	-3	True	TATAAA	-35	NA	4171569	4164445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
ES_00028838	chr19	-	4586	15	FSM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	0	0	0	0	multi-exon	FALSE	canonical	2	38	junction_6	17.8245416691225	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGCTGCTTTTTCTGG	2749	False	NA	NA	False	AATATA	-7	NA	4213353	4203989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ES_00028839	chr19	-	1979	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2803	False	NA	-2	True	AGTAAA	-14	NA	4213299	4206793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ES_00028840	chr19	-	827	2	FSM	ENSMUSG00000040247.7	ENSMUST00000238094.2	878	2	34	17	34	-6	multi-exon	FALSE	canonical	2	2	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGATAAAGTTGGATCAAA	NA	False	NA	NA	False	AATAAA	-18	NA	4235497	4234392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4235073_4235350
ES_00028841	chr19	-	2125	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	0	-24	0	0	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	6027	False	NA	0	True	AATAAA	-15	NA	4251606	4245194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ES_00028842	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5998	False	NA	0	True	AATAAA	-15	NA	4251635	4245194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ES_00028845	chr19	-	582	2	FSM	ENSMUSG00000034616.18	ENSMUST00000235731.2	604	2	22	0	22	0	multi-exon	FALSE	canonical	2	4	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCCCAGAGGAGCCCCT	7078	False	NA	NA	False	NA	NA	NA	4314480	4313808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4313846_4313935
ES_00028847	chr19	-	598	4	FSM	ENSMUSG00000034616.18	ENSMUST00000236721.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.62466929133727	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAGGCAGCAACAGGAG	2450	False	NA	NA	False	NA	NA	NA	4319108	4316402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4316666_4317774_4318003_4318572_4318614_4319042
ES_00028848	chr19	-	2139	15	FSM	ENSMUSG00000005986.17	ENSMUST00000056888.13	2139	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	4.70128076340124	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCTGTCCTGCGTGGT	860	False	NA	-5	True	AATAAA	-17	NA	4333163	4320207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332071_4332196_4332333_4332908
ES_00028849	chr19	-	3394	21	FSM	ENSMUSG00000024858.15	ENSMUST00000088737.11	3376	21	0	-18	0	17	multi-exon	FALSE	canonical	3	202	junction_18	28.8679753360017	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTGTGCCTGGTGACTA	NA	False	NA	9	True	TATAAA	-31	NA	4356250	4336011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929
ES_00028851	chr19	-	7242	21	FSM	ENSMUSG00000054611.18	ENSMUST00000075856.11	7242	21	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_20	26.1194850638369	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAGACTTTAAAAA	NA	False	NA	7	True	NA	NA	NA	4447105	4366197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4446338
ES_00028852	chr19	-	5319	10	NIC	ENSMUSG00000054611.18	novel	7242	21	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	36.3402983470227	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAGACTTTAAAAA	4148	False	NA	7	True	NA	NA	NA	4384052	4366197	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4383670
ES_00028857	chr19	-	222	1	Genic_Genomic	ENSMUSG00000054611.18	novel	NA	NA	NA	NA	8310	24	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAGCATCATAGACTTT	1817	False	NA	NA	False	NA	NA	NA	4438635	4438413	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_-_4438400_4438600
ES_00028858	chr19	-	1490	4	FSM	ENSMUSG00000041845.12	ENSMUST00000117462.2	1495	4	0	5	0	-5	multi-exon	FALSE	canonical	3	13	junction_1	2.62466929133727	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTATTAGTGTCCTGAC	9159	False	NA	-9	True	ACTAAA	-10	NA	4489449	4475699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4476790_4482082_4482193_4482795_4482884_4489247
ES_00028860	chr19	-	3592	2	FSM	ENSMUSG00000045045.8	ENSMUST00000053597.3	3194	2	-390	-8	-225	1	multi-exon	FALSE	canonical	3	59	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGTTTTTCGTCTCAT	NA	False	NA	1	True	AATAAA	-19	NA	4665920	4661811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4662667_4663183
ES_00028861	chr19	-	3100	3	FSM	ENSMUSG00000045045.8	ENSMUST00000113822.3	2918	3	-180	-2	-180	2	multi-exon	FALSE	canonical	3	22	junction_2	18.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTTTCGTCTCATC	NA	False	NA	2	True	AATAAA	-20	NA	4665875	4661810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4662667_4663183_4664543_4664990
ES_00028862	chr19	-	1383	8	NIC	ENSMUSG00000024889.6	novel	1425	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	108	junction_6	91.2554163894295	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGGTCTTGGAACCTT	NA	False	NA	-14	True	ATTAAA	-16	NA	4675631	4672623	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675121_4675220_4675324_4675460
ES_00028863	chr19	-	1432	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	-7	0	3	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGAACCTTGGGACTCT	NA	False	NA	-6	True	ATTAAA	-24	NA	4675668	4672615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
ES_00028865	chr19	-	862	7	FSM	ENSMUSG00000024889.6	ENSMUST00000224675.3	862	7	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_6	51.0315806361338	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGCTCTCCAGCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	4675347	4673001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220
ES_00028869	chr19	-	466	1	FSM	ENSMUSG00000071691.12	ENSMUST00000223788.2	303	1	-237	74	-22	13	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACGCCCAGCAAGCCAAGGA	NA	False	NA	NA	False	NA	NA	NA	4676301	4675835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4675800_4676300
ES_00028870	chr19	-	2630	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	0	-20	0	20	multi-exon	TRUE	canonical	3	26	junction_3	29.8923996285938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTTTTTCTACTAACT	NA	False	NA	NA	False	AATAAA	-33	NA	4843929	4834300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
ES_00028872	chr19	-	2965	2	FSM	ENSMUSG00000094936.9	ENSMUST00000179820.2	2965	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAATGTTATTTACCTG	NA	False	NA	-11	True	NA	NA	NA	4843911	4840095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4842849_4843699
ES_00028874	chr19	-	3179	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	0	-14	0	14	multi-exon	FALSE	canonical	3	363	junction_1	19	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTGCGATCTGGCTGGG	7765	False	NA	NA	False	AATAAA	-31	NA	4861662	4850582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4851834_4852578_4854044_4861199
ES_00028875	chr19	-	3508	2	FSM	ENSMUSG00000006456.11	ENSMUST00000113793.4	3508	2	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7814	False	NA	0	True	AATAAA	-27	NA	4861613	4850949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4854044_4861199
ES_00028876	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889298	4875393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
ES_00028877	chr19	-	870	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889301	4875393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
ES_00028879	chr19	-	2975	21	FSM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	-92	4	-92	3	multi-exon	FALSE	canonical	2	4	junction_20	6.25519783859791	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTTTTGTTTTTGT	221	False	NA	0	True	AATAAA	-26	NA	4928029	4911247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798_4921886_4922266_4922387_4922569_4922685_4927738
ES_00028880	chr19	-	2666	19	NNC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	0	38304	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	197.388568345738	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCTTCTCAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	4978275	4918952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4918978_4957258_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ES_00028881	chr19	-	5605	17	FSM	ENSMUSG00000006464.10	ENSMUST00000053506.8	5602	17	1	-4	0	4	multi-exon	FALSE	canonical	2	6	junction_3	3.75832409459323	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTTGTGTGTGTAGG	5074	False	NA	NA	False	ATTAAA	-22	NA	4956655	4936901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4940787_4941017_4941105_4941680_4941816_4942915_4943050_4944288_4944448_4944989_4945060_4947307_4947467_4947601_4947723_4949227_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
ES_00028882	chr19	-	2668	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	14	1	14	-1	multi-exon	FALSE	canonical	3	495	junction_17	96.7659038009169	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCAGTGTATGTTTCTT	NA	False	NA	-6	True	AATAAA	-16	NA	4978301	4957257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ES_00028884	chr19	-	344	3	FSM	ENSMUSG00000024901.16	ENSMUST00000139436.8	794	3	450	0	450	0	multi-exon	FALSE	canonical	1	3	junction_2	4	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCTCTGTGACCGCCGG	5511	False	NA	NA	False	NA	NA	NA	4988206	4985013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4985126_4986145_4986248_4988076
ES_00028887	chr19	-	361	3	Intergenic	novelGene_2038	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_2	1.5	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGGCTCACTAGGTAAAGG	3345	False	NA	NA	False	ACTAAA	-10	NA	5069165	5067481	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_5067699_5068325_5068385_5069080
ES_00028888	chr19	-	1889	8	NNC	ENSMUSG00000024870.7	novel	1913	6	NA	NA	0	75913	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	499.29717951275	145	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATATATTTATGTGG	1568	False	NA	NA	False	NA	NA	NA	5157033	5073319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5073339_5127730_5127755_5149232_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ES_00028890	chr19	-	2598	2	FSM	ENSMUSG00000061451.14	ENSMUST00000077066.8	4006	2	7	1401	7	-1401	multi-exon	FALSE	canonical	2	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTCACACGTGTGTTC	NA	False	NA	NA	False	AATAAA	-15	NA	5135552	5130758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5133130_5135325
ES_00028891	chr19	-	1343	6	FSM	ENSMUSG00000024873.8	ENSMUST00000025805.8	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	5.2687759489278	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAATTCTGCTTCTGGA	NA	False	NA	0	True	AATAAA	-18	NA	5148549	5142895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5143526_5143699_5143844_5143947_5144061_5144311_5144360_5144759_5144829_5148210
ES_00028892	chr19	-	1913	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1501	False	NA	0	True	AATAAA	-43	NA	5157100	5149232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ES_00028895	chr19	-	2929	16	NIC	ENSMUSG00000024862.17	novel	2940	16	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	17.0507738501479	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAACCGGGCTTGTTTTG	NA	False	NA	-7	True	AATAAA	-12	NA	5168317	5157779	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
ES_00028897	chr19	-	4869	24	FSM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_19	9.30455099331212	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTTGTTATCTTCGAT	NA	False	NA	NA	False	AATAAA	-25	NA	5323147	5183185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634_5191738_5192271_5192383_5192543_5192699_5193378_5193486_5193802_5193908_5194827_5194964_5195098_5195215_5197154_5197236_5202301_5202396_5202687_5202849_5203691_5203752_5205716_5205798_5205883_5205976_5206384_5206530_5209995_5210122_5210745_5210836_5217951_5218040_5322566
ES_00028898	chr19	-	1894	8	FSM	ENSMUSG00000024853.11	ENSMUST00000237781.2	1894	8	0	0	0	0	multi-exon	FALSE	canonical	3	1640	junction_7	472.274435955561	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	NA	False	NA	-25	True	AATAAA	-18	NA	5334436	5323959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885
ES_00028901	chr19	-	514	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	-109	0	-109	0	multi-exon	FALSE	canonical	3	25	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGTTCTTTACTCTTTA	9091	False	NA	-3	True	NA	NA	NA	5357553	5355905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5356162_5357295
ES_00028902	chr19	-	758	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8986	False	NA	-9	True	AATAAA	-14	NA	5416391	5414668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5415187_5415845_5415985_5416290
ES_00028903	chr19	-	745	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	0	-2	0	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGTTCTGTGTCAGAG	8558	False	NA	-6	True	AATAAA	-17	NA	5416819	5414665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5415187_5416595
ES_00028904	chr19	-	1261	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	0	0	0	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGTTCTGTGTCAGAG	8181	False	NA	-6	True	AATAAA	-17	NA	5417196	5414665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5415187_5415845_5415985_5416595
ES_00028905	chr19	-	732	3	FSM	ENSMUSG00000024844.16	ENSMUST00000237167.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_2	2653	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATCTGTTGGATGCCCTT	8743	False	NA	-107	True	NA	NA	NA	5416634	5414766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5415187_5415845_5415985_5416461
ES_00028906	chr19	-	4826	20	FSM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	0	265	0	-265	multi-exon	FALSE	canonical	3	368	junction_1	46.7672968579718	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTAACAGTTTTTCTTC	9040	False	NA	NA	False	NA	NA	NA	5438731	5427815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
ES_00028907	chr19	-	595	3	FSM	ENSMUSG00000039148.6	ENSMUST00000237915.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_2	6	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGAGATCCATTGGGG	NA	False	NA	NA	False	NA	NA	NA	5433274	5432516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5432886_5432967_5433102_5433182
ES_00028908	chr19	-	492	4	FSM	ENSMUSG00000039330.6	ENSMUST00000044527.5	487	4	0	-5	0	5	multi-exon	FALSE	canonical	3	41	junction_1	3.74165738677394	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGAGACTTCTGAGGG	3342	False	NA	NA	False	ATTAAA	-18	NA	5444429	5440071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310
ES_00028909	chr19	-	1659	7	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	1241	-2	1241	2	3prime_fragment	TRUE	canonical	3	8	junction_6	13.7234592334926	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGTGTGAGACTTCTGA	6225	False	NA	NA	False	ATTAAA	-15	NA	5451313	5440074	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940_5450089_5450261_5450966_5451047
ES_00028912	chr19	-	957	7	FSM	ENSMUSG00000024914.17	ENSMUST00000113674.8	939	7	0	-18	0	0	multi-exon	FALSE	canonical	3	65	junction_3	385.460655147405	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTTGGTTTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	5474949	5472836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5473054_5473358_5473448_5473587_5473703_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ES_00028913	chr19	-	994	7	FSM	ENSMUSG00000024914.17	ENSMUST00000025853.16	992	7	0	-2	0	0	multi-exon	TRUE	canonical	3	999	junction_1	76.7282361469506	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTTGGTTTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	5475007	5472836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ES_00028914	chr19	-	734	6	FSM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_1	82.8700187039921	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTCTTAAATTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	5474542	5472870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
ES_00028915	chr19	-	1134	9	FSM	ENSMUSG00000024910.6	ENSMUST00000235502.2	1496	9	79	283	79	-83	multi-exon	FALSE	canonical	1	1	junction_4	0.85695682505013	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTTCTCCCACATGGC	NA	False	NA	NA	False	AGTAAA	-44	NA	5518437	5515353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5515480_5515557_5515759_5515832_5515898_5516047_5516174_5516258_5516514_5516608_5516764_5517050_5517165_5517865_5517951_5518430
ES_00028919	chr19	-	2044	13	ISM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	209	0	1	0	intron_retention	FALSE	canonical	3	118	junction_10	98.9692362414817	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3649	False	NA	-3	True	AATAAA	-18	NA	5660056	5653041	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879
ES_00028920	chr19	-	1908	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	-3	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3629	False	NA	-3	True	AATAAA	-18	NA	5660076	5653041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ES_00028921	chr19	-	1386	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTACCCATTGCCAT	3648	False	NA	NA	False	NA	NA	NA	5660057	5653445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ES_00028922	chr19	-	2154	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3440	False	NA	-3	True	AATAAA	-18	NA	5660265	5653041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ES_00028923	chr19	-	1429	9	FSM	ENSMUSG00000024926.11	ENSMUST00000235788.2	1429	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	64.0917311359274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAGGCATTCAAAAAGGCA	3633	False	NA	NA	False	NA	NA	NA	5660072	5655093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ES_00028924	chr19	-	3519	16	FSM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	0	-6	0	0	multi-exon	FALSE	canonical	3	39	junction_14	13.596404753545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTTTGTGTGTTCA	9047	False	NA	0	True	AAAAAG	-27	NA	5711663	5701212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623
ES_00028926	chr19	-	3589	17	FSM	ENSMUSG00000056917.14	ENSMUST00000164304.9	3584	17	0	-5	0	2	multi-exon	TRUE	canonical	3	17	junction_16	17.2005632175228	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTGTGTGTTCAAG	8124	False	NA	2	True	AAAAAG	-29	NA	5713708	5701210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5713631
ES_00028927	chr19	-	3583	16	FSM	ENSMUSG00000056917.14	ENSMUST00000169854.2	3583	16	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_15	19.0524422464826	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTTTGTGTGTTCA	8097	False	NA	0	True	AAAAAG	-27	NA	5713735	5701212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5713631
ES_00028928	chr19	-	7499	35	FSM	ENSMUSG00000054874.13	ENSMUST00000113615.9	7264	35	-161	-74	-161	74	multi-exon	TRUE	canonical	3	44	junction_25	21.6322679648029	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGTGAGGGATAAGGGGT	NA	False	NA	72	True	NA	NA	NA	5739097	5714588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733304_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ES_00028929	chr19	-	7087	35	NNC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_25	25.2079242772344	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCAGTTTTATTTTCTG	NA	False	NA	-2	True	NA	NA	NA	5738723	5714662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731621_5733304_5733441_5733815_5733907_5734317_5734494_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ES_00028934	chr19	-	2136	18	FSM	ENSMUSG00000054874.13	ENSMUST00000145270.8	2136	18	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_14	29.9410031198033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCAGCGCAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	5734697	5723319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733334_5733441_5733815_5733907_5734317_5734497_5734576
ES_00028935	chr19	-	719	7	FSM	ENSMUSG00000054874.13	ENSMUST00000127876.8	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	29.5183558711073	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCTTCAGCCTCACGCGA	NA	False	NA	NA	False	NA	NA	NA	5733371	5729010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731621_5733304
ES_00028937	chr19	-	2820	18	FSM	ENSMUSG00000024937.16	ENSMUST00000235730.2	2815	18	0	-5	0	0	multi-exon	FALSE	canonical	2	5	junction_10	4.01295480019072	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCGCCTGCCCTTTCTC	NA	False	NA	NA	False	AATAAA	-16	NA	5776303	5758077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770713_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ES_00028938	chr19	-	2487	12	FSM	ENSMUSG00000024937.16	ENSMUST00000237081.2	2493	12	6	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.86336897470469	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACCCCTACCCTGCT	NA	False	NA	NA	False	NA	NA	NA	5776303	5765823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5766523_5766923_5766973_5767066_5767225_5769975_5770436_5770591_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ES_00028939	chr19	-	1209	2	FSM	ENSMUSG00000024939.7	ENSMUST00000116558.3	1189	2	-18	-2	0	2	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTGCCTGGTTAATTGG	NA	False	NA	1	True	AATAAA	-19	NA	5779679	5778112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5778907_5779264
ES_00028941	chr19	-	2535	5	FSM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	0	-3	0	3	multi-exon	FALSE	canonical	3	87	junction_1	171.430744033852	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTGCCTGGTTAATTGG	NA	False	NA	1	True	AATAAA	-19	NA	5781741	5778112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5778897_5779264_5780741_5781268_5781354_5781471_5781624_5781703
ES_00028942	chr19	-	830	2	FSM	ENSMUSG00000079478.10	ENSMUST00000160141.2	826	2	0	-4	0	0	multi-exon	FALSE	canonical	3	503	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTCTTTCTTGGTTCT	NA	False	NA	3	True	AAAACA	-17	NA	5781688	5780330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5780741_5781268
ES_00028943	chr19	-	699	4	FSM	ENSMUSG00000079478.10	ENSMUST00000025885.6	699	4	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_2	15.6276108929747	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTCTTTCTTGGTTCT	NA	False	NA	3	True	AAAACA	-17	NA	5781755	5780330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5780741_5781268_5781354_5781471_5781624_5781703
ES_00028945	chr19	-	2715	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	21	-5	0	5	multi-exon	FALSE	canonical	3	227	junction_12	26.041358331508	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGTAAATTAAAGGGGC	9910	False	NA	70	True	NA	NA	NA	5821426	5808373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ES_00028951	chr19	-	6982	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	1	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGCTTCTTTGTGCAT	4062	False	NA	0	True	AATAAA	-17	NA	5852699	5845717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5845700_5852700
ES_00028953	chr19	-	3804	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	0	700	0	-700	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAGAACAGCAGGTCCAG	4335	False	NA	NA	False	NA	NA	NA	5925302	5900429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
ES_00028954	chr19	-	803	7	FSM	ENSMUSG00000024816.13	ENSMUST00000155227.2	768	7	-35	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	74.2690304830276	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCACCTCTGCAAGCGAG	4335	False	NA	NA	False	NA	NA	NA	5925302	5915297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924837_5925118
ES_00028956	chr19	-	3313	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	3	-2	3	2	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGAGTGCTCTGTCTGC	1275	False	NA	NA	False	NA	NA	NA	5962896	5946541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
ES_00028957	chr19	-	4100	19	Fusion	ENSMUSG00000024833.16_ENSMUSG00000024826.16	novel	2421	18	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	97.5723378376838	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	1676	False	NA	-26	True	AATAAA	-14	NA	6014180	5947414	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr19_-_5949148_5990573_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ES_00028960	chr19	-	725	4	FSM	ENSMUSG00000024826.16	ENSMUST00000142995.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_3	29.4882274061286	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTTTTGTTAGAGACTT	1374	False	NA	NA	False	NA	NA	NA	5962797	5955153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5955581_5956551_5956660_5957028_5957190_5962768
ES_00028962	chr19	-	2342	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1676	False	NA	0	True	AATAAA	-21	NA	6014180	5990569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
ES_00028963	chr19	-	2421	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ES_00028967	chr19	-	3065	22	FSM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	0	-3	0	3	multi-exon	TRUE	canonical	2	82	junction_11	40.0795693849892	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCTGGGTGTTATTCT	2594	False	NA	-3	True	AATAAA	-17	NA	6065236	6038569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
ES_00028968	chr19	-	3264	22	FSM	ENSMUSG00000024942.20	ENSMUST00000164843.10	3122	22	-137	-5	-137	4	multi-exon	FALSE	canonical	2	39	junction_21	51.1945734794372	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGGGTGTTATTCTC	1766	False	NA	-2	True	AATAAA	-18	NA	6066064	6038568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065765
ES_00028969	chr19	-	1764	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGAAACTCCTGTAACAC	NA	False	NA	0	True	ATTAAA	-42	NA	6107815	6103651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ES_00028970	chr19	-	1311	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	445.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107788	6103926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6105013_6105105_6105231_6107688
ES_00028972	chr19	-	1443	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAGGATTGAATGAA	4068	False	NA	NA	False	AATATA	-18	NA	6117806	6115556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ES_00028973	chr19	-	718	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	116.793264645983	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	9953	False	NA	-10	True	TATAAA	-13	NA	6117880	6116158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
ES_00028974	chr19	-	734	5	FSM	ENSMUSG00000024799.17	ENSMUST00000161528.2	732	5	0	-2	0	0	multi-exon	FALSE	canonical	3	22	junction_2	104.193329920874	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGGTTTTGCTTTAATA	9948	False	NA	-66	True	NA	NA	NA	6117885	6116214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
ES_00028975	chr19	-	2526	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	0	149	0	-1	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	987	False	NA	-4	True	AATAAA	-17	NA	6127261	6118020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
ES_00028978	chr19	-	861	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	0	-21	0	21	multi-exon	FALSE	canonical	3	178	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAGTCTGCCTTCAGAGC	1018	False	NA	22	True	ATTAAA	-41	NA	6127230	6125911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6126523_6126980
ES_00028982	chr19	-	1375	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	78	-11	78	11	multi-exon	FALSE	canonical	3	283	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAGACTTCATTTATTT	NA	False	NA	2	True	AATAAA	-36	NA	6168602	6166018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6166618_6167826
ES_00028983	chr19	-	1632	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	3	0	3	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178331	6169428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
ES_00028985	chr19	-	2742	14	FSM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_11	13.4199357135648	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	False	NA	0	True	AATAAA	-14	NA	6285902	6277794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6285130_6285541
ES_00028992	chr19	-	1271	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	0	-9	0	0	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGTTGTCTGCTTTGCCC	NA	False	NA	0	True	AATAAA	-30	NA	6887474	6884064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ES_00028993	chr19	-	2274	7	FSM	ENSMUSG00000024955.16	ENSMUST00000239322.2	2274	7	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	9.26762584963856	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTGGTCGGTGAGTCAC	9653	False	NA	0	True	AATATA	-17	NA	6899208	6888344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891564_6897430_6897768_6898989
ES_00028995	chr19	-	807	5	FSM	ENSMUSG00000050623.6	ENSMUST00000237380.2	806	5	0	-1	0	1	multi-exon	FALSE	canonical	3	6	junction_4	16.5529453572468	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGCGTGGCTGCTTGCG	7411	False	NA	2	True	ATTAAA	-23	NA	6902727	6899789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902518_6902659
ES_00028996	chr19	-	786	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	0	-2	0	2	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCGTGGCTGCTTGCGT	7390	False	NA	3	True	ATTAAA	-24	NA	6902748	6899788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
ES_00028997	chr19	-	1855	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	0	3	0	-3	multi-exon	FALSE	canonical	3	22	junction_3	2.47767812455308	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTCGTCTGTTCCTTCTC	6813	False	NA	-2	True	AATAAA	-29	NA	6918561	6915427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
ES_00028999	chr19	-	4571	30	FSM	ENSMUSG00000024960.10	ENSMUST00000237726.2	4558	30	0	-13	0	12	multi-exon	FALSE	canonical	3	577	junction_23	51.3241082764095	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGTTTGGATGAAAACAC	4365	False	NA	4	True	AATAAA	-28	NA	6947128	6931068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
ES_00029002	chr19	-	1515	6	FSM	ENSMUSG00000056629.17	ENSMUST00000238181.2	1526	6	17	-6	17	0	multi-exon	FALSE	canonical	3	23	junction_5	269.092103191454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957601	6955108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6956681
ES_00029003	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957808	6955108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
ES_00029004	chr19	-	667	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	-3	0	0	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957869	6955108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ES_00029006	chr19	-	1158	7	FSM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	60.459352736639	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4780	False	NA	-1	True	GATAAA	-17	NA	6964997	6959840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
ES_00029007	chr19	-	1281	7	FSM	ENSMUSG00000024962.14	ENSMUST00000025914.7	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	52.2323867176508	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4758	False	NA	-1	True	GATAAA	-17	NA	6965019	6959840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
ES_00029010	chr19	-	1074	6	FSM	ENSMUSG00000024963.13	ENSMUST00000025915.13	1074	6	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_3	27.3978101314685	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9276	False	NA	-4	True	AATAAA	-17	NA	6969871	6965278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526
ES_00029014	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	7045	False	NA	-3	True	AATAAA	-17	NA	6973405	6970385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
ES_00029015	chr19	-	1450	12	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	5024	535	4900	-514	3prime_fragment	FALSE	canonical	2	3	junction_11	6.80179849818541	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGCCTTCAGCTGTGTG	7622	False	NA	NA	False	NA	NA	NA	6991813	6976860	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991695
ES_00029016	chr19	-	2558	1	FSM	ENSMUSG00000024965.10	ENSMUST00000238171.2	2947	1	79	310	79	-310	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATTCCAGACTAAATCC	5635	False	NA	NA	False	NA	NA	NA	6996634	6994076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6994100_6996600
ES_00029020	chr19	-	2108	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	0	0	0	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ES_00029022	chr19	-	801	1	FSM	ENSMUSG00000117901.2	ENSMUST00000236559.2	953	1	-81	233	-81	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGTTTTTCAGAAAATGG	NA	False	NA	NA	False	NA	NA	NA	7065867	7065066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7065100_7065900
ES_00029023	chr19	-	1689	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	24	0	24	0	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	False	NA	2	True	AATAAA	-26	NA	7183657	7175566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
ES_00029024	chr19	-	498	3	FSM	ENSMUSG00000024767.12	ENSMUST00000127241.2	634	3	136	0	136	0	multi-exon	FALSE	canonical	3	1098	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGACCTCAGTAGCTGA	NA	False	NA	NA	False	NA	NA	NA	7177693	7176904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7176932_7177027_7177113_7177307
ES_00029027	chr19	-	556	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	0	-6	0	6	multi-exon	FALSE	canonical	3	12296	junction_1	0	850	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCCTTCTGCACCAGGCT	7366	False	NA	NA	False	AATAAA	-32	NA	7194981	7192511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7192850_7194763
ES_00029029	chr19	-	3324	7	FSM	ENSMUSG00000024764.11	ENSMUST00000236769.2	3324	7	0	0	0	0	multi-exon	TRUE	canonical	3	457	junction_3	27.2605738914075	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTTGTATGTCATTA	NA	False	NA	-2	True	NA	NA	NA	7218421	7203077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
ES_00029032	chr19	-	4625	18	FSM	ENSMUSG00000024969.16	ENSMUST00000165965.8	2874	18	-386	-1365	0	2	multi-exon	FALSE	canonical	0	0	junction_3	87.3120720397554	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCTACTGTTCCTTCT	3901	False	NA	1	True	AATAAA	-22	NA	7319184	7252758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ES_00029033	chr19	-	4491	18	FSM	ENSMUSG00000024969.16	ENSMUST00000032557.15	4488	18	0	-3	0	3	multi-exon	FALSE	canonical	3	38	junction_2	102.773914534042	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTACTGTTCCTTCTC	3901	False	NA	2	True	AATAAA	-23	NA	7319184	7252757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ES_00029036	chr19	-	3009	18	FSM	ENSMUSG00000024969.16	ENSMUST00000025921.15	3018	18	9	0	9	0	multi-exon	FALSE	canonical	0	0	junction_3	103.565869249268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3147	False	NA	NA	False	AAGAAA	-13	NA	7272803	7254123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7272402
ES_00029037	chr19	-	2660	19	FSM	ENSMUSG00000024969.16	ENSMUST00000171721.8	2660	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	113.063799863202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	4528	False	NA	NA	False	AAGAAA	-13	NA	7318557	7254123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ES_00029045	chr19	-	3153	6	FSM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	0	-1	0	1	multi-exon	FALSE	canonical	3	309	junction_2	10.2293694820355	2056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTCTCTAGGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	7360359	7333826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
ES_00029046	chr19	-	1489	5	FSM	ENSMUSG00000024970.6	ENSMUST00000236817.2	1477	5	0	-12	0	12	multi-exon	FALSE	canonical	3	309	junction_1	7.5291101731878	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGTGGTTTCTAACACTT	NA	False	NA	NA	False	ATTAAA	-19	NA	7360286	7350586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
ES_00029047	chr19	-	654	1	FSM	ENSMUSG00000095690.3	ENSMUST00000178377.3	654	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCCCTGCACTTTCTT	6604	False	NA	NA	False	NA	NA	NA	7376442	7375788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7375800_7376400
ES_00029049	chr19	-	2781	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	0	-19	0	19	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGTACAGTTTGGGTG	9039	False	NA	1	True	AATAAA	-36	NA	7460567	7403246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ES_00029052	chr19	-	480	1	FSM	ENSMUSG00000117937.2	ENSMUST00000235666.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	6259	False	NA	NA	False	NA	NA	NA	7705029	7704549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7704500_7705000
ES_00029053	chr19	-	273	1	FSM	ENSMUSG00000118220.2	ENSMUST00000236907.2	1365	1	811	281	811	-281	mono-exon	FALSE	NA	NA	NA	NA	NA	688	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCATGCAAGTTTGTTGAG	NA	False	NA	NA	False	NA	NA	NA	7937661	7937388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7937400_7937700
ES_00029056	chr19	-	2775	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	38	0	38	0	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGGATGAGTGATCAAA	9067	False	NA	NA	False	AATAAA	-17	NA	8700695	8684245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
ES_00029057	chr19	-	1410	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	-17	0	17	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	-4	True	AATAAA	-19	NA	8690349	8684933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
ES_00029058	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	False	NA	-18	True	TTTAAA	-26	NA	8691243	8684980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ES_00029060	chr19	-	755	5	NNC	ENSMUSG00000118346.2	novel	818	5	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	97.0090201991547	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5113	False	NA	-4	True	AATATA	-17	NA	8751792	8749888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_8750148_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ES_00029062	chr19	-	775	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5074	False	NA	-4	True	AATATA	-17	NA	8751831	8749888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
ES_00029063	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	5074	False	NA	-31	True	NA	NA	NA	8751831	8749915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ES_00029064	chr19	-	635	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5096	False	NA	-4	True	AATATA	-17	NA	8751809	8749888	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
ES_00029065	chr19	-	2065	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9901	False	NA	-3	True	AATAAA	-14	NA	8763680	8751855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
ES_00029066	chr19	-	2002	11	FSM	ENSMUSG00000003680.17	ENSMUST00000177056.8	2006	11	4	0	4	0	multi-exon	FALSE	canonical	3	11	junction_10	58.7504042539283	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9905	False	NA	-5	True	AATAAA	-12	NA	8763676	8751857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
ES_00029068	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
ES_00029069	chr19	-	822	7	FSM	ENSMUSG00000071662.5	ENSMUST00000235964.2	833	7	11	0	11	0	multi-exon	FALSE	canonical	3	1319	junction_5	75.5005518743627	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTCATGGAAATGTTG	NA	False	NA	-12	True	CATAAA	-12	NA	8775806	8770548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587
ES_00029072	chr19	-	3942	3	FSM	ENSMUSG00000071660.11	ENSMUST00000088092.6	1585	3	-118	-2239	-79	18	multi-exon	FALSE	canonical	3	241	junction_2	7	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTCACTGATAATTTC	1806	False	NA	5	True	AATAAA	-29	NA	8796776	8786420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8789203_8793217_8793401_8795799
ES_00029073	chr19	-	1624	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	0	19	0	-19	multi-exon	TRUE	canonical	3	189	junction_2	8	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATTTGTTTTCTTGTT	4762	False	NA	NA	False	NA	NA	NA	8816558	8814315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8815636_8815917_8816018_8816354
ES_00029075	chr19	-	831	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	5	-15	5	15	multi-exon	FALSE	canonical	3	500	junction_1	0	1269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTATTTATACACTCTA	NA	False	NA	7	True	AATGAA	-40	NA	8858282	8857362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8857981_8858069
ES_00029076	chr19	-	407	3	FSM	ENSMUSG00000114220.2	ENSMUST00000225181.2	642	3	200	35	200	-35	multi-exon	FALSE	canonical	1	1	junction_1	0.5	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAATTCAGCTCATAGTA	3819	False	NA	NA	False	NA	NA	NA	8918028	8914373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8914664_8915809_8915914_8918015
ES_00029077	chr19	-	4183	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	7	5	7	-5	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGACTTGCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	9112993	9087236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ES_00029080	chr19	-	3236	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAGCAGTATGTCTTG	NA	False	NA	-3	True	NA	NA	NA	9876915	9849659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ES_00029081	chr19	-	3472	17	FSM	ENSMUSG00000024660.10	ENSMUST00000238129.2	3449	17	0	-23	0	-5	multi-exon	FALSE	canonical	3	363	junction_13	49.1273854382665	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGTCTGCAGCAGTATG	NA	False	NA	-8	True	NA	NA	NA	9876825	9849664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ES_00029083	chr19	-	478	3	FSM	ENSMUSG00000024660.10	ENSMUST00000235358.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_2	13	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCAACTGCCAAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	9856003	9855124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_9855161_9855491_9855613_9855682
ES_00029087	chr19	-	3340	13	NNC	ENSMUSG00000024665.9	novel	3150	12	NA	NA	-179	57344	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	114.644468539335	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAGCAAGCAAACAAAAAT	9692	False	NA	NA	False	NA	NA	NA	10079289	9982784	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_9982811_10040143_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
ES_00029088	chr19	-	3153	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	0	-3	0	3	multi-exon	FALSE	canonical	3	359	junction_1	25.8738196920081	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTAGTTCAGCAAGATC	9871	False	NA	-1	True	AATAAA	-28	NA	10079110	10040125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
ES_00029089	chr19	-	2246	3	NNC	ENSMUSG00000024742.16	novel	2373	3	NA	NA	0	30346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAACGAAAAATAAAAC	2155	False	NA	NA	False	NA	NA	NA	10181307	10146149	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_10146181_10176502_10178462_10181051
ES_00029090	chr19	-	2099	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	1	0	-1	multi-exon	FALSE	canonical	3	443	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAATGTGTCTGAATGT	2155	False	NA	NA	False	AATAAA	-13	NA	10181307	10176502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10178462_10181167
ES_00029091	chr19	-	2340	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	0	1	0	-1	multi-exon	FALSE	canonical	3	832	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAATGTGTCTGAATGT	2030	False	NA	NA	False	AATAAA	-13	NA	10181432	10176502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10178462_10181051
ES_00029092	chr19	-	2365	3	FSM	ENSMUSG00000024742.16	ENSMUST00000156291.2	2373	3	0	8	0	2	multi-exon	FALSE	canonical	3	3	junction_2	414.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGAATGTGTCTGAATG	1929	False	NA	NA	False	AATAAA	-12	NA	10181533	10176503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10178462_10181051_10181384_10181458
ES_00029093	chr19	-	2156	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	0	-4	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2204	False	NA	NA	False	AATAAA	-14	NA	10181258	10176501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10178462_10181062
ES_00029094	chr19	-	542	3	FSM	ENSMUSG00000036098.16	ENSMUST00000189439.2	3177	3	0	2635	0	-2635	multi-exon	FALSE	canonical	3	10	junction_2	0.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGGGGCAGGGAGTG	7142	False	NA	NA	False	NA	NA	NA	10218112	10206016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10206281_10206383_10206472_10217922
ES_00029095	chr19	-	2981	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTCCCCAGGACCCAC	NA	False	NA	NA	False	AATAAA	-16	NA	10502479	10477897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
ES_00029096	chr19	-	1846	5	NNC	ENSMUSG00000024668.9	novel	2025	5	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.3954448053506	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502476	10479004	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_10479571_10479595_10480494_10494343_10494454_10494532_10494751_10502422
ES_00029097	chr19	-	2025	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502520	10479004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
ES_00029098	chr19	-	997	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGAGGCAAACTTTC	NA	False	NA	0	True	NA	NA	NA	10502456	10479707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
ES_00029099	chr19	-	884	6	FSM	ENSMUSG00000024667.13	ENSMUST00000236561.2	876	6	0	-8	0	1	multi-exon	FALSE	canonical	3	14	junction_1	26.7686383665662	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGTTGATTTTCTCCTA	NA	False	NA	-2	True	AATAAA	-18	NA	10533120	10527823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
ES_00029100	chr19	-	1023	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	0	-24	0	0	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533115	10527831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ES_00029101	chr19	-	927	5	FSM	ENSMUSG00000024667.13	ENSMUST00000154383.2	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	15.1224171348366	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACCCATTTAGTAGTTT	NA	False	NA	-92	True	NA	NA	NA	10533115	10527913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
ES_00029102	chr19	-	1533	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	0	-4	0	4	multi-exon	FALSE	canonical	3	12	junction_4	65.3543227338483	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTTCATGGTGAAG	1785	False	NA	0	True	AATAAA	-19	NA	10554451	10547837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
ES_00029103	chr19	-	1266	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	0	-6	0	4	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTTCATGGTGAAG	1765	False	NA	0	True	AATAAA	-19	NA	10554471	10547837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
ES_00029104	chr19	-	1599	4	FSM	ENSMUSG00000024666.7	ENSMUST00000236185.2	1593	4	0	-6	0	4	multi-exon	FALSE	canonical	3	102	junction_3	28.0158685192676	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTTCATGGTGAAG	1765	False	NA	0	True	AATAAA	-19	NA	10554471	10547837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10548969_10552200_10552373_10552603_10552876_10554447
ES_00029105	chr19	-	1594	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	0	-4	0	4	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTTCATGGTGAAG	1510	False	NA	0	True	AATAAA	-19	NA	10554726	10547837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ES_00029106	chr19	-	1747	5	NIC	ENSMUSG00000024666.7	novel	1590	5	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_4	52.1464284491278	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1468	False	NA	-4	True	AATAAA	-15	NA	10554768	10547841	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
ES_00029107	chr19	-	2441	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	-4	0	4	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCCCTGTTTACAGTGA	9789	False	NA	-19	True	AATAAA	-21	NA	10582748	10569556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
ES_00029108	chr19	-	2518	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236607.2	2516	18	0	-2	0	1	multi-exon	FALSE	canonical	3	13	junction_17	13.858404068355	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGTCCCTGTTTACAG	9519	False	NA	-22	True	AATAAA	-18	NA	10583018	10569559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
ES_00029109	chr19	-	2691	18	NIC	ENSMUSG00000034371.10	novel	2437	18	NA	NA	11	-10	combination_of_known_junctions	FALSE	canonical	3	19	junction_17	12.7406930547585	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGAAGCCATAGGACTTT	9800	False	NA	-36	True	AATAAA	-4	NA	10582737	10569573	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582304
ES_00029112	chr19	-	3907	10	FSM	ENSMUSG00000024736.16	ENSMUST00000120524.2	3895	10	0	-12	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.088497300281	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACACTCTCTGTC	NA	False	NA	1	True	AATAAA	-27	NA	10847142	10835185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ES_00029113	chr19	-	3507	11	FSM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	150	0	-12	0	multi-exon	FALSE	canonical	3	39	junction_8	9.57131129992124	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACACTCTCTGTC	NA	False	NA	1	True	AATAAA	-27	NA	10847154	10835185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ES_00029114	chr19	-	3490	11	NNC	ENSMUSG00000024736.16	novel	3657	11	NA	NA	1	5	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_6	16.1496129984591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTACTGCTGTGACACT	NA	False	NA	-6	True	AATAAA	-20	NA	10847141	10835192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841028_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ES_00029115	chr19	-	2110	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	81	-3	81	3	multi-exon	TRUE	canonical	3	149	junction_2	8.28653526310404	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTGACAAACTCTCTTC	NA	False	NA	0	True	AATAAA	-20	NA	10859284	10848020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
ES_00029116	chr19	-	743	3	FSM	ENSMUSG00000034659.15	ENSMUST00000147699.2	1096	3	290	63	0	-63	multi-exon	FALSE	canonical	3	149	junction_1	10	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAATTATGGCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	10859075	10849615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10850054_10851605_10851851_10859015
ES_00029120	chr19	-	1874	2	ISM	ENSMUSG00000041488.17	ENSMUST00000075304.14	2430	11	41461	-140	5554	140	3prime_fragment	FALSE	canonical	3	48	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGGAGATAAGCCAGGTTT	4312	False	NA	NA	False	NA	NA	NA	11754714	11752341	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_11753953_11754451
ES_00029121	chr19	-	2810	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGGGCCATCTCTCTG	7137	False	NA	-8	True	AATAAA	-25	NA	11796306	11754848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
ES_00029123	chr19	-	1127	1	FSM	ENSMUSG00000051548.5	ENSMUST00000054711.5	744	1	-39	-344	-39	344	mono-exon	FALSE	NA	NA	NA	NA	NA	1694	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGATTTTTATGATCCCA	NA	False	NA	NA	False	TTTAAA	-11	NA	11855761	11854634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_11854600_11855800
ES_00029126	chr19	-	7506	12	NIC	ENSMUSG00000118491.2	novel	3221	13	NA	NA	618	133	intron_retention	TRUE	canonical	2	5	junction_1	40.1453969037794	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATCTTCATTCAAACTAC	NA	False	NA	NA	False	AATAAA	-18	NA	12772872	12740890	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_12741745_12742644_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256_12756464_12767623_12767653_12772347
ES_00029127	chr19	-	5508	11	FSM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	23	0	23	0	multi-exon	FALSE	canonical	3	113	junction_5	14.0003571383019	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTTGTTTCCTTTTAA	NA	False	NA	-4	True	AATAAA	-18	NA	12773467	12744383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256_12756464_12767623_12767653_12772347
ES_00029129	chr19	-	4626	20	NNC	ENSMUSG00000024642.18	novel	4545	20	NA	NA	0	78	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_14	32.1687896093519	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAGATTGTTAAGTACT	NA	False	NA	62	True	ATTAAA	-17	NA	14575415	14425435	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495341_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731
ES_00029130	chr19	-	4545	20	FSM	ENSMUSG00000024642.18	ENSMUST00000052011.15	4545	20	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_14	23.8865044942308	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATTATTTTCTAATT	NA	False	NA	-16	True	ATTAAA	-15	NA	14575415	14425513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495338_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731
ES_00029132	chr19	-	1572	3	FSM	ENSMUSG00000024640.10	ENSMUST00000161707.2	1572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2829	junction_2	366	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15887076	15882493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_15883516_15884293_15884432_15886664
ES_00029133	chr19	-	2548	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	175	False	NA	NA	False	AATAAA	-16	NA	15962353	15933137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ES_00029135	chr19	-	494	1	FSM	ENSMUSG00000057990.5	ENSMUST00000075293.5	494	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTGACTTGCGGGCA	NA	False	NA	NA	False	NA	NA	NA	16142169	16141675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_16141700_16142200
ES_00029137	chr19	-	10838	72	FSM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_58	9.97459578127363	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTCAATGGATATTT	NA	False	NA	-27	True	CATAAA	-16	NA	16758291	16593049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872_16642269_16643517_16643801_16645961_16646066_16653409_16653571_16655217_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ES_00029142	chr19	-	2854	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	-125	-3	-91	3	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTTGTGTCACTGTGT	NA	False	NA	NA	False	TTTAAA	-7	NA	18609278	18556688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
ES_00029143	chr19	-	1402	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	272	0	1	0	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	7277	False	NA	2	True	AATAAA	-23	NA	20368036	20350791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
ES_00029146	chr19	-	1858	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	117	-1013	0	0	multi-exon	FALSE	canonical	3	207	junction_2	1.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	629	False	NA	NA	False	AATAAA	-21	NA	21630164	21574675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_21576233_21596472_21596580_21629970
ES_00029147	chr19	-	2069	7	FSM	ENSMUSG00000097930.3	ENSMUST00000181623.3	2057	7	0	-12	0	12	multi-exon	FALSE	canonical	0	0	junction_1	5.09901951359278	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCGGGTAGTTACAGTT	4961	False	NA	NA	False	ATTAAA	-30	NA	23053217	23014741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_23015986_23028913_23029070_23039177_23039444_23040703_23040803_23040913_23041034_23041720_23041808_23053120
ES_00029148	chr19	-	5707	24	NIC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	0	69	combination_of_known_junctions	FALSE	canonical	2	204	junction_5	69.1008413551705	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCAATGTCTGT	NA	False	NA	58	True	TTTAAA	-35	NA	23251182	23183745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ES_00029149	chr19	-	5868	25	FSM	ENSMUSG00000024943.10	ENSMUST00000087556.7	5683	25	-116	-69	-37	69	multi-exon	FALSE	canonical	2	93	junction_7	95.2415696910872	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCAATGTCTGT	NA	False	NA	58	True	TTTAAA	-35	NA	23251298	23183745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ES_00029150	chr19	-	5761	25	NIC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	2	93	junction_7	96.5628753139056	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTTATTTAAGATGAGAG	NA	False	NA	-13	True	AATAAA	-21	NA	23251259	23183816	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ES_00029151	chr19	-	3448	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	0	0	0	0	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATTTTTGGAAACCT	NA	False	NA	4	True	AATAAA	-29	NA	23251261	23186086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ES_00029153	chr19	-	2549	11	FSM	ENSMUSG00000071604.6	ENSMUST00000096164.6	2548	11	0	-1	0	1	multi-exon	FALSE	canonical	3	34	junction_3	7.73627817493658	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGTGTAGTGTTTGTGT	NA	False	NA	-3	True	AATAAA	-25	NA	24008383	23950112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_23950996_23952724_23953018_23955325_23955479_23956753_23956833_23956949_23957080_23962072_23962207_23963772_23963881_23965810_23965940_23972144_23972256_23998969_23999027_24007911
ES_00029154	chr19	-	4713	25	NNC	ENSMUSG00000024812.12	novel	4728	24	NA	NA	-78	2167	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	108.389696876082	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGCCTCTACCAGACTG	NA	False	NA	NA	False	NA	NA	NA	24202472	24069701	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_24069748_24072013_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
ES_00029155	chr19	-	4699	24	NIC	ENSMUSG00000024812.12	novel	4728	24	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_23	82.6461699898347	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTTTTAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	24202377	24071886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
ES_00029160	chr19	-	864	1	FSM	ENSMUSG00000118238.2	ENSMUST00000235913.2	790	1	-21	-53	-21	53	mono-exon	FALSE	NA	NA	NA	NA	NA	313	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTCATTGGAAAGAGT	NA	False	NA	NA	False	ATTAAA	-4	NA	25324588	25323724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_25323700_25324600
ES_00029161	chr19	-	2077	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	0	66961	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	363.11010464718	3266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCGACTTAACATTTTG	NA	False	NA	NA	False	NA	NA	NA	27404509	27299136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_27299165_27367466_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
ES_00029164	chr19	-	1726	11	FSM	ENSMUSG00000041360.9	ENSMUST00000235297.2	1721	11	0	-5	0	5	multi-exon	FALSE	canonical	3	1425	junction_3	83.6366546437625	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTTTTTTTTTTTA	NA	False	NA	NA	False	ATTAAA	-26	NA	27404509	27392735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
ES_00029165	chr19	-	275	1	FSM	ENSMUSG00000117862.2	ENSMUST00000236360.2	208	1	172	-239	172	239	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACTAATATGAACAAATAG	NA	False	NA	NA	False	ATTAAA	-27	NA	28123531	28123256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_28123300_28123500
ES_00029166	chr19	-	3337	1	ISM	ENSMUSG00000052942.14	ENSMUST00000162022.8	7514	11	417890	0	21719	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTATTCTATTAATCCA	NA	False	NA	NA	False	ATTAAA	-19	NA	28239587	28236250	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_28236200_28239600
ES_00029172	chr19	-	435	1	FSM	ENSMUSG00000063754.8	ENSMUST00000183196.2	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1466	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGACATCCCATGCACGG	9669	False	NA	NA	False	AATACA	-30	NA	28981242	28980807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_28980800_28981200
ES_00029173	chr19	-	2810	5	FSM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	0	-1	0	1	multi-exon	FALSE	canonical	3	26	junction_1	7.58287544405155	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTGTCTCCATGTTG	NA	False	NA	0	True	AATAAA	-17	NA	29025361	28998231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_29000347_29003611_29003731_29004570_29004744_29015271_29015392_29025078
ES_00029174	chr19	-	504	2	FSM	ENSMUSG00000024782.8	ENSMUST00000125587.2	504	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTATGAGACAGAA	NA	False	NA	NA	False	AGTAAA	-19	NA	29004644	29003300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_29003731_29004570
ES_00029175	chr19	-	942	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	78	0	-19	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	1	True	AATAAA	-21	NA	29339292	29325998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
ES_00029178	chr19	-	6933	16	NNC	ENSMUSG00000046324.13	novel	7058	15	NA	NA	0	-52	intron_retention	FALSE	non_canonical	0	0	junction_1	89.4715348899054	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCCATATGTAAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	29625778	29585669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_29587458_29587489_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
ES_00029179	chr19	-	7021	15	NNC	ENSMUSG00000046324.13	novel	7058	15	NA	NA	-16	-52	intron_retention	FALSE	canonical	3	18	junction_1	85.7602555300031	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCCATATGTAAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	29625831	29585669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_29590083_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
ES_00029182	chr19	-	3770	25	FSM	ENSMUSG00000024827.11	ENSMUST00000025778.9	3767	25	0	-3	0	3	multi-exon	FALSE	canonical	1	455	junction_4	183.478351735445	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTCCCATTTGATTTTA	NA	False	NA	-4	True	AATAAA	-19	NA	30152829	30075843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088072_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
ES_00029184	chr19	-	3263	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	0	-1	0	0	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTATTATATTGTGTT	8019	False	NA	-1	True	AATAAA	-18	NA	32188413	32100126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
ES_00029185	chr19	-	3665	10	FSM	ENSMUSG00000040451.19	ENSMUST00000099514.10	3665	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	73.0506335477551	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTATTATATTGTGTT	8331	False	NA	-1	True	AATAAA	-18	NA	32365912	32100126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32225393_32225437_32266940_32267032_32329344_32329424_32365619
ES_00029186	chr19	-	3420	7	NNC	ENSMUSG00000040451.19	novel	3665	10	NA	NA	-3498	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGCTATTATATTGTGT	4078	False	NA	-2	True	AATAAA	-17	NA	32219724	32100127	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
ES_00029188	chr19	-	718	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	1	-5	1	5	mono-exon	FALSE	NA	NA	NA	NA	NA	659	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAGTAAAAATGTGTAGCA	NA	False	NA	NA	False	AATAAA	-40	NA	32443977	32443259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_32443300_32444000
ES_00029189	chr19	-	3788	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	34	-51	0	51	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAGCCTACATGAATAAA	NA	False	NA	NA	False	AAAAAG	-6	NA	32689697	32648986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ES_00029191	chr19	-	1600	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	0	-3	0	3	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTTTTATAGCCTCACA	NA	False	NA	NA	False	AATAAA	-18	NA	33369665	33115143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
ES_00029192	chr19	-	2755	11	FSM	ENSMUSG00000024766.16	ENSMUST00000112508.9	2839	11	81	3	81	0	multi-exon	FALSE	canonical	3	39	junction_5	12.3109707172099	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTTCTGTTTCTTAAA	NA	False	NA	-4	True	NA	NA	NA	33567627	33532562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
ES_00029193	chr19	-	1545	4	FSM	ENSMUSG00000087303.4	ENSMUST00000238164.2	1550	4	0	5	0	-5	multi-exon	FALSE	canonical	2	8	junction_1	8.25967446224258	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAGCAGTCTTCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	33708256	33697074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_33698425_33699077_33699150_33700229_33700302_33708205
ES_00029195	chr19	-	2964	10	FSM	ENSMUSG00000024781.17	ENSMUST00000049572.15	2969	10	7	-2	7	2	multi-exon	FALSE	canonical	3	30	junction_9	6.37704215656966	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCGGTGTGGTGTTTGCTT	5922	False	NA	0	True	AATAAA	-22	NA	34504867	34469715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502247_34504765
ES_00029197	chr19	-	2728	2	FSM	ENSMUSG00000067279.4	ENSMUST00000087321.4	2725	2	0	-3	0	3	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATGTTTTCTTTCCCCC	NA	False	NA	4	True	AATAAA	-20	NA	36714053	36709127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_36711755_36713952
ES_00029200	chr19	-	5066	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	0	-7	0	7	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTGTGTGACTTTGT	NA	False	NA	5	True	AATAAA	-25	NA	37340010	37246134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
ES_00029204	chr19	-	6798	54	FSM	ENSMUSG00000048612.17	ENSMUST00000226068.2	6633	54	-48	-117	0	35	multi-exon	TRUE	canonical	3	86	junction_16	23.3368693179296	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCAGGTTCAGTTTCTC	8856	False	NA	34	True	NA	NA	NA	38031847	37887640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37915430_37915443_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
ES_00029205	chr19	-	6813	55	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_38	36.0505903104012	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTGTCCTCTATTCTG	8856	False	NA	1	True	AATAAA	-22	NA	38031847	37887673	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37915430_37915443_37916801_37916859_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956892_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
ES_00029206	chr19	-	6905	55	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	-83	2	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_16	31.7375046969603	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTGTCCTCTATTCTG	8773	False	NA	1	True	AATAAA	-22	NA	38031930	37887673	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37915430_37915443_37916801_37916859_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
ES_00029207	chr19	-	895	5	ISM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	145	7	42	-7	3prime_fragment	FALSE	canonical	3	7	junction_2	3.67423461417477	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACCATCTTCCTATGAG	5354	False	NA	-12	True	ATTAAA	-6	NA	38113131	38105084	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966
ES_00029208	chr19	-	1407	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	-5	0	5	multi-exon	TRUE	canonical	3	295	junction_2	36.3583414649629	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGAGTCTTTCCTTTCAT	NA	False	NA	-2	True	AATAAA	-25	NA	38212586	38176923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ES_00029210	chr19	-	947	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	5	16065	5	-3	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAAGTCTTTAGCATTA	NA	False	NA	NA	False	AATAAA	-7	NA	38212581	38192993	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ES_00029211	chr19	-	890	1	FSM	ENSMUSG00000117935.2	ENSMUST00000237606.2	814	1	-49	-27	-49	27	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACCTACCCTTCCCACAG	NA	False	NA	NA	False	NA	NA	NA	38692817	38691927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_38691900_38692800
ES_00029213	chr19	-	2496	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	0	75	0	-75	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCTAAAGCCCCTACTC	NA	False	NA	NA	False	NA	NA	NA	40260060	40209691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ES_00029215	chr19	-	5344	23	NIC	ENSMUSG00000025006.19	novel	2688	24	NA	NA	-43	2713	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	16.9725105892581	391	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTCTCTTCCTTC	9817	False	NA	-1	True	AATAAA	-23	NA	40502266	40280483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ES_00029220	chr19	-	3477	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	-41	-9	0	9	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTTTCTCCCTTATTTG	NA	False	NA	-2	True	AATAAA	-27	NA	40576854	40538691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ES_00029224	chr19	-	2743	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_10	4.39337855732112	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGACTTTTTTTCTTG	NA	False	NA	-1	True	CATAAA	-17	NA	40600677	40584889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ES_00029225	chr19	-	1686	12	FSM	ENSMUSG00000025008.16	ENSMUST00000135795.8	1686	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.71501908359634	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTCTCAACCCATG	NA	False	NA	NA	False	AATAAA	-15	NA	40600647	40593541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ES_00029227	chr19	-	608	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58660	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923931	40917370	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_40917737_40922870_40923027_40923845
ES_00029230	chr19	-	5105	12	FSM	ENSMUSG00000025154.16	ENSMUST00000026150.15	5103	12	0	-2	0	2	multi-exon	FALSE	canonical	3	296	junction_2	42.9826026693522	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTTCTGACTGGTCTC	4527	False	NA	NA	False	ATTAAA	-19	NA	41790486	41755024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
ES_00029231	chr19	-	1812	11	FSM	ENSMUSG00000025154.16	ENSMUST00000163265.9	1812	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	113.148398132718	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTCCAACTGGTATTTG	4527	False	NA	NA	False	TTTAAA	-28	NA	41790486	41758238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41758636_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
ES_00029232	chr19	-	1866	12	FSM	ENSMUSG00000025154.16	ENSMUST00000177495.2	1652	12	-20	-194	-20	0	multi-exon	FALSE	canonical	3	21	junction_5	104.114844409653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTCCAACTGGTATTTG	4507	False	NA	NA	False	TTTAAA	-28	NA	41790506	41758238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769744_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
ES_00029233	chr19	-	230	2	Intergenic	novelGene_2125	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	82	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACATATTTTTATGTGT	NA	False	NA	NA	False	NA	NA	NA	41818104	41800444	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_41800620_41818049
ES_00029236	chr19	-	2273	6	FSM	ENSMUSG00000034321.15	ENSMUST00000112123.4	2296	6	23	0	23	0	multi-exon	FALSE	canonical	3	144	junction_3	310.084246616948	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGAGTCCGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	41921839	41910730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41919794_41919870_41921487_41921604_41921690
ES_00029238	chr19	-	484	2	FSM	ENSMUSG00000034321.15	ENSMUST00000238034.2	484	2	0	0	0	0	multi-exon	FALSE	canonical	3	934	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGTCTCAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	41921687	41919585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41919870_41921487
ES_00029240	chr19	-	6607	31	FSM	ENSMUSG00000025159.9	ENSMUST00000171561.8	6607	31	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_15	35.2197703317643	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTGTCCCATAACAAG	NA	False	NA	NA	False	AATAAA	-16	NA	41969596	41929524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
ES_00029241	chr19	-	3418	30	FSM	ENSMUSG00000025159.9	ENSMUST00000164776.8	3412	30	0	-6	0	0	multi-exon	FALSE	canonical	2	4	junction_29	55.4890911711589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACACTCACGTGTACTGC	NA	False	NA	-8	True	AATAAA	-16	NA	41969575	41932643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41969437
ES_00029242	chr19	-	3520	31	NIC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	0	78	combination_of_known_junctions	FALSE	canonical	3	137	junction_15	29.8713723971445	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAGGCACAGAGAAGCTA	NA	False	NA	70	True	NA	NA	NA	41969553	41932565	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
ES_00029249	chr19	-	1906	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	36.2745089560148	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTTATGAACTTTCT	4134	False	NA	-1	True	AATAAA	-23	NA	42074802	42063378	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067117_42067216_42074635
ES_00029253	chr19	-	2619	15	FSM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	-2	1	0	-1	multi-exon	FALSE	canonical	3	19	junction_14	18.8128538342208	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTCTTCCAGCCTCTTT	NA	False	NA	0	True	GATAAA	-26	NA	42420224	42271474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
ES_00029255	chr19	-	504	1	FSM	ENSMUSG00000117706.2	ENSMUST00000237236.2	111	1	1	-394	1	394	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTGTGGGGAAAT	NA	False	NA	-9	True	AATAAA	-30	NA	42367539	42367035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42367000_42367500
ES_00029257	chr19	-	2823	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	9	15	-4	-15	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGTATGTGTGTATGT	NA	False	NA	73	True	NA	NA	NA	42768408	42743558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ES_00029258	chr19	-	2954	20	FSM	ENSMUSG00000025188.16	ENSMUST00000160455.8	2952	20	0	-2	0	0	multi-exon	FALSE	canonical	2	8	junction_12	35.0087444557164	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGCCTGTCCCTGGCCT	NA	False	NA	-3	True	AATAAA	-19	NA	42768415	42743634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768176
ES_00029259	chr19	-	2062	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	0	-4	0	4	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGATCCATTCATGAG	8317	False	NA	1	True	NA	NA	NA	43513044	43488186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ES_00029260	chr19	-	2651	4	NNC	ENSMUSG00000040414.9	novel	1535	4	NA	NA	0	19829	intron_retention	FALSE	non_canonical	0	0	junction_1	138.595334216801	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTTCATCCCCGGCT	NA	False	NA	NA	False	NA	NA	NA	43663320	43632410	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43632441_43652239_43653083_43654210_43655583_43662914
ES_00029261	chr19	-	1046	2	FSM	ENSMUSG00000040414.9	ENSMUST00000236286.2	1046	2	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	43654413	43652239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43653083_43654210
ES_00029262	chr19	-	1535	4	FSM	ENSMUSG00000040414.9	ENSMUST00000046038.9	1535	4	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	77.3146529162199	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	43663320	43652239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43653083_43654210_43654268_43655353_43655583_43662914
ES_00029263	chr19	-	3724	2	FSM	ENSMUSG00000040414.9	ENSMUST00000235953.2	3724	2	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACGCTGTGTTGGGTTTG	NA	False	NA	-7	True	ATTAAA	-15	NA	43663299	43652243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43655583_43662914
ES_00029264	chr19	-	2758	10	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	0	36555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.118675694562	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTATATATATAGGGAAC	NA	False	NA	NA	False	NA	NA	NA	43741439	43685137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43685168_43723762_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ES_00029265	chr19	-	4798	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTTGAACATACTAAT	NA	False	NA	NA	False	NA	NA	NA	43741439	43721692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ES_00029266	chr19	-	3909	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	0	-8	0	7	multi-exon	TRUE	canonical	3	34	junction_13	13.2052526755398	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTCCTTCATCTTGAA	NA	False	NA	2	True	AATAAA	-22	NA	43868207	43835252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43868051
ES_00029267	chr19	-	5217	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212048.2	4186	14	-86	-945	-86	3	multi-exon	FALSE	canonical	3	36	junction_13	12.8730717519697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTGTTTCCTTCATCT	571	False	NA	-2	True	AATAAA	-18	NA	43879216	43835256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43877748
ES_00029268	chr19	-	6134	17	NIC	ENSMUSG00000025195.10	novel	5074	16	NA	NA	-43	3	combination_of_known_junctions	FALSE	canonical	3	14	junction_13	22.3025187759141	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTGTTTCCTTCATCT	NA	False	NA	-2	True	AATAAA	-18	NA	43928673	43835256	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43889508_43891498_43899163_43899287_43900673_43900829_43928555
ES_00029269	chr19	-	1658	9	FSM	ENSMUSG00000025196.5	ENSMUST00000026210.5	1828	9	170	0	170	0	multi-exon	FALSE	canonical	3	15	junction_8	10.3191266587827	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	6032	False	NA	3	True	ATTAAA	-22	NA	43974825	43944745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43969241_43969439_43974504
ES_00029270	chr19	-	3143	13	NNC	ENSMUSG00000025198.17	novel	3136	12	NA	NA	0	56289	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	57.0085276272087	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATAGGGAGGGGGATTTT	NA	False	NA	NA	False	NA	NA	NA	44058195	43967093	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43967133_44023385_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
ES_00029272	chr19	-	3241	13	NNC	ENSMUSG00000025198.17	novel	3228	12	NA	NA	0	56282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.1183346525001	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAGAACATAGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	44058195	43967100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43967135_44023384_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
ES_00029273	chr19	-	3229	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	0	-1	0	1	multi-exon	FALSE	canonical	3	64	junction_11	39.5783562189201	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTGTTCTATTTTCT	NA	False	NA	-1	True	AATAAA	-20	NA	44058214	44023381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
ES_00029274	chr19	-	3137	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	-1	0	1	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTGTTCTATTTTCT	NA	False	NA	-1	True	AATAAA	-20	NA	44058224	44023381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
ES_00029275	chr19	-	3483	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	0	-2	0	1	multi-exon	FALSE	canonical	3	113	junction_2	45.2515193115104	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATCTCTACTCATTTT	NA	False	NA	0	True	ATTAAA	-16	NA	44095916	44061772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ES_00029276	chr19	-	3503	21	FSM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	0	-1	0	1	multi-exon	FALSE	canonical	3	185	junction_2	31.5901883501824	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATCTCTACTCATTTT	NA	False	NA	0	True	ATTAAA	-16	NA	44095919	44061772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ES_00029279	chr19	-	3598	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	0	-17	0	17	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTTGAGTAATTTAGACA	NA	False	NA	NA	False	AAAAAG	-19	NA	44124315	44097058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
ES_00029280	chr19	-	329	1	FSM	ENSMUSG00000077391.3	ENSMUST00000104203.3	146	1	2	-185	2	185	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTCCTGTGCCCCTCAG	4908	False	NA	76	True	AATACA	-35	NA	44102561	44102232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44102200_44102600
ES_00029281	chr19	-	899	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	0	-14	0	1	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTTTTTTGGTTTTTGT	963	False	NA	NA	False	ATTAAA	-19	NA	44134885	44127683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
ES_00029282	chr19	-	5503	7	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35337	0	intron_retention	FALSE	canonical	3	43	junction_6	11.9640665698954	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	896	False	NA	-1	True	AATAAA	-17	NA	44145544	44136075	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44140902_44142097_44144116_44144279_44144505_44145490
ES_00029283	chr19	-	2624	12	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	35189	0	35189	0	3prime_fragment	FALSE	canonical	3	31	junction_9	12.7694107632134	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	748	False	NA	-1	True	AATAAA	-17	NA	44145692	44136075	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
ES_00029285	chr19	-	5012	26	FSM	ENSMUSG00000051984.14	ENSMUST00000063632.14	3939	26	20	-1093	3	1093	multi-exon	TRUE	canonical	1	1	junction_23	5.22302594288024	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGAGGTGTGGCTTCCTGC	NA	False	NA	49	True	NA	NA	NA	44534283	44504302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496_44524693_44531704_44531829_44532139_44532252_44534226
ES_00029286	chr19	-	3545	25	FSM	ENSMUSG00000051984.14	ENSMUST00000111985.2	3548	25	3	0	3	0	multi-exon	FALSE	canonical	2	5	junction_17	4.98051759916131	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTTCCCTTGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	44534283	44505645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496_44524693_44532139_44532252_44534226
ES_00029287	chr19	-	2142	5	FSM	ENSMUSG00000025204.11	ENSMUST00000171415.8	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2269.24749366392	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTCTGGATTTTGTAA	1988	False	NA	NA	False	AATAAA	-16	NA	44543865	44537010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44538660_44541136_44541293_44542107_44542208_44543369_44543497_44543755
ES_00029288	chr19	-	680	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTCTTTCTCCAGG	1974	False	NA	-7	True	AATAAA	-29	NA	44543879	44538678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
ES_00029289	chr19	-	605	5	FSM	ENSMUSG00000025204.11	ENSMUST00000168083.2	603	5	0	-2	0	2	multi-exon	FALSE	canonical	3	85	junction_4	2211.89753096747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTCTGGTTTCTGTGTCT	1995	False	NA	-18	True	AATAAA	-18	NA	44543858	44538689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543454_44543755
ES_00029291	chr19	-	1510	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	22	-134	0	134	multi-exon	FALSE	canonical	3	460	junction_1	27.5	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTCAAAGTCACAATTCAAA	NA	False	NA	NA	False	NA	NA	NA	44994859	44993133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44994380_44994501_44994609_44994702
ES_00029293	chr19	-	3265	16	FSM	ENSMUSG00000074818.14	ENSMUST00000169459.4	3265	16	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_9	4.99955553580071	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAAGCTGGATGTCCAA	NA	False	NA	NA	False	NA	NA	NA	45034156	45015928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45016414_45016817_45016919_45017162_45017763_45018178_45018251_45018418_45018511_45018636_45018729_45021450_45021627_45022073_45022125_45024495_45024694_45025169_45025566_45025977_45026039_45027605_45027754_45028011_45028189_45028599_45028775_45029001_45029143_45033856
ES_00029294	chr19	-	207	2	Antisense	novelGene_ENSMUSG00000117848.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATTCCTGAGATCAAG	6705	False	NA	NA	False	NA	NA	NA	45051615	45048294	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_-_45048446_45051559
ES_00029295	chr19	-	2020	2	FSM	ENSMUSG00000025216.10	ENSMUST00000099401.6	2484	2	424	40	424	-40	multi-exon	FALSE	canonical	1	3	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCCTCCGATAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	45223827	45221162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45222697_45223341
ES_00029297	chr19	-	888	1	FSM	ENSMUSG00000057605.5	ENSMUST00000077435.5	888	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTAACCTCATTAAACA	2199	False	NA	-44	True	NA	NA	NA	45439634	45438746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45438700_45439600
ES_00029299	chr19	-	2700	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-38	0	intron_retention	FALSE	canonical	3	33	junction_7	11.0176111340908	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549008	45540713	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ES_00029302	chr19	-	893	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	0	-5	0	5	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTTTTCAATGCTG	4887	False	NA	5	True	AATAAA	-32	NA	45738030	45736167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ES_00029303	chr19	-	5069	16	FSM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	0	-12	0	12	multi-exon	FALSE	canonical	3	653	junction_7	84.8678973464054	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTTCTCTGGGTTCTC	5476	False	NA	0	True	AATAAA	-25	NA	45771990	45738685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
ES_00029304	chr19	-	2045	6	FSM	ENSMUSG00000025220.9	ENSMUST00000235508.2	2045	6	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_1	91.7527111316064	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGTGTGGTTGCATTTC	NA	False	NA	0	True	AATAAA	-23	NA	45751673	45740268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623
ES_00029305	chr19	-	2148	9	FSM	ENSMUSG00000025220.9	ENSMUST00000236960.2	2148	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	256.490953787848	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGTGTGGTTGCATTTC	NA	False	NA	0	True	AATAAA	-23	NA	45760325	45740268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45753888_45754064_45755832_45756447_45758489_45758649_45760120
ES_00029306	chr19	-	2050	9	NIC	ENSMUSG00000025221.17	novel	2395	10	NA	NA	47	-1	combination_of_known_junctions	TRUE	canonical	3	6	junction_8	6.92820323027551	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGTCTCTGCCTCTTTA	NA	False	NA	-1	True	AATAAA	-20	NA	45785436	45780785	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45784717_45784772_45785353
ES_00029308	chr19	-	240	2	Antisense	novelGene_ENSMUSG00000117956.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	157	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45841269	45799074	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_-_45799264_45841218
ES_00029309	chr19	-	240	2	Intergenic	novelGene_2131	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	664	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45883791	45799074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_45799264_45883740
ES_00029311	chr19	-	3862	26	NNC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	4853	2	at_least_one_novel_splicesite	TRUE	canonical	3	28	junction_25	35.5729335309867	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTCTCGTTAGTGTCTT	NA	False	NA	-1	True	ATTAAA	-19	NA	45982074	45805800	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45981817
ES_00029313	chr19	-	266	1	FSM	ENSMUSG00000117972.2	ENSMUST00000236365.2	480	1	17	197	17	-197	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAAGCACTCACAGAGC	NA	False	NA	NA	False	NA	NA	NA	45866548	45866282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45866300_45866500
ES_00029314	chr19	-	212	1	Intergenic	novelGene_2133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTGGTCACTCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	46006659	46006447	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_46006400_46006700
ES_00029315	chr19	-	3133	11	FSM	ENSMUSG00000025223.16	ENSMUST00000156585.9	3133	11	0	0	0	0	multi-exon	TRUE	canonical	3	350	junction_1	132.738992010637	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGAGTCATGTATGGTAC	6722	False	NA	NA	False	NA	NA	NA	46033649	46020008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ES_00029316	chr19	-	2296	11	FSM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	0	-1	0	0	multi-exon	FALSE	canonical	3	31	junction_10	244.379806858095	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	8088	False	NA	-30	True	ATTAAA	-21	NA	46028060	46021031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
ES_00029317	chr19	-	2108	11	FSM	ENSMUSG00000025223.16	ENSMUST00000152946.8	2108	11	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_1	177.433255056655	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	6718	False	NA	-30	True	ATTAAA	-21	NA	46033653	46021031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46021781_46022476_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ES_00029318	chr19	-	2890	10	FSM	ENSMUSG00000025223.16	ENSMUST00000137771.2	2014	10	-140	-736	0	0	multi-exon	FALSE	canonical	3	31	junction_9	235.530344562811	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGGTAAAATTCTGGGC	8088	False	NA	-126	True	GGGGCT	-35	NA	46028060	46021127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
ES_00029320	chr19	-	241	1	FSM	ENSMUSG00000093525.2	ENSMUST00000175770.2	479	1	333	-95	333	95	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCCCTTCCTAACTGA	NA	False	NA	NA	False	NA	NA	NA	46193964	46193723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46193700_46194000
ES_00029321	chr19	-	1790	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGGCTCCCAAGTCTG	5862	False	NA	NA	False	NA	NA	NA	46327059	46318250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ES_00029323	chr19	-	1941	10	FSM	ENSMUSG00000036748.17	ENSMUST00000167861.8	1941	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	353.322781114268	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGGCTCCCAAGTCTG	5822	False	NA	NA	False	NA	NA	NA	46327099	46318250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46327007
ES_00029324	chr19	-	1106	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_9	349.700542086801	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	-1	True	NA	-2	True	AGTAAA	-19	NA	46327055	46318978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ES_00029325	chr19	-	1220	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	344.205723727706	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5874	False	NA	-2	True	AGTAAA	-19	NA	46327047	46318978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
ES_00029326	chr19	-	1164	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	349.486642921081	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	-1	True	NA	-2	True	AGTAAA	-19	NA	46327055	46318978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ES_00029327	chr19	-	1179	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	122	junction_9	380.63750942366	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5844	False	NA	-2	True	AGTAAA	-19	NA	46327077	46318978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326851_46327007
ES_00029328	chr19	-	1057	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	-7	0	7	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCATTTCTGCCCC	5844	False	NA	5	True	AGTAAA	-26	NA	46327077	46318971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ES_00029329	chr19	-	1209	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5875	False	NA	-2	True	AGTAAA	-19	NA	46327046	46318978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ES_00029330	chr19	-	1325	9	ISM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	-4	0	0	intron_retention	FALSE	canonical	3	415	junction_8	247.19526694498	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5858	False	NA	-2	True	AGTAAA	-19	NA	46327063	46318978	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751
ES_00029331	chr19	-	1012	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	0	-13	0	7	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCATTTCTGCCCC	-2	True	NA	5	True	AGTAAA	-26	NA	46327056	46318971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ES_00029332	chr19	-	1011	9	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	390	junction_8	277.077155319597	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ES_00029333	chr19	-	1267	9	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	413	junction_5	271.660605121538	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751
ES_00029334	chr19	-	1175	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	-11	0	7	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCATTTCTGCCCC	5858	False	NA	5	True	AGTAAA	-26	NA	46327063	46318971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ES_00029336	chr19	-	2764	12	NNC	ENSMUSG00000025228.6	novel	2757	11	NA	NA	0	20569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.8605205674321	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTAGAAGAGGAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	46384164	46344680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_46344712_46365251_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ES_00029337	chr19	-	2781	12	NNC	ENSMUSG00000025228.6	novel	2757	11	NA	NA	0	10692	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.8605205674321	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACAACAACAAAAAACTCT	NA	False	NA	NA	False	NA	NA	NA	46384186	46354557	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_46354586_46365253_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ES_00029339	chr19	-	2757	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384186	46365249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ES_00029340	chr19	-	862	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	0	-19	0	19	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGATTAGAAAGGAGCAA	NA	False	NA	-2	True	ATTAAA	-12	NA	46561532	46519515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ES_00029342	chr19	-	3306	18	FSM	ENSMUSG00000025041.18	ENSMUST00000172239.3	3148	18	0	-158	0	0	multi-exon	FALSE	canonical	3	36	junction_17	29.5968295318789	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGGTATAAGGATTTTTT	NA	False	NA	NA	False	AAAACA	-21	NA	47003592	46876108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_47003136
ES_00029343	chr19	-	3728	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_5	15.8666589126981	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGTCTGAATAATTT	7192	False	NA	NA	False	AGTAAA	-14	NA	46950747	46875267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
ES_00029345	chr19	-	2162	10	FSM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	14	-17	0	17	multi-exon	FALSE	canonical	3	486	junction_3	49.2396507895471	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTTTGGTTTCTTATT	NA	False	NA	-2	True	AATAAA	-34	NA	47039329	47022038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ES_00029346	chr19	-	2142	10	NNC	ENSMUSG00000025050.9	novel	2159	10	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_2	147.016585945974	435	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTGTGTTGACATATTC	NA	False	NA	-16	True	AATAAA	-20	NA	47039327	47022052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_47023125_47025676_47025760_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ES_00029347	chr19	-	2832	7	FSM	ENSMUSG00000025050.9	ENSMUST00000236339.2	2832	7	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	32.688768033616	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTTAAAAAGAAAAACT	NA	False	NA	NA	False	NA	NA	NA	47039329	47029262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ES_00029349	chr19	-	447	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	0	-22	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	0	True	AATAAA	-17	NA	47079073	47071902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
ES_00029350	chr19	-	366	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	-4	0	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	0	True	AATAAA	-17	NA	47079082	47071902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
ES_00029352	chr19	-	1998	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	-6	0	6	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTTATGACTTGAAAGT	NA	False	NA	-4	True	AATAAA	-33	NA	47525558	47489465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ES_00029353	chr19	-	1462	10	FSM	ENSMUSG00000042694.18	ENSMUST00000182808.8	1618	10	0	156	0	-156	multi-exon	FALSE	canonical	1	1	junction_1	42.2937989792684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAAACCCTTGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	47525475	47495799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47496038_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ES_00029358	chr19	-	3142	6	FSM	ENSMUSG00000025027.19	ENSMUST00000235453.2	1679	6	-369	-1094	-369	564	multi-exon	FALSE	canonical	3	1351	junction_3	77.5768006558662	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTTGTCTCTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	52988673	52978519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582
ES_00029360	chr19	-	1469	11	FSM	ENSMUSG00000025027.19	ENSMUST00000238001.2	1422	11	-47	0	-47	0	multi-exon	FALSE	canonical	3	1197	junction_9	123.396758466339	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTGTCTGCCTCTTT	NA	False	NA	0	True	AATAAA	-17	NA	52993382	52979610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194
ES_00029361	chr19	-	4030	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	9975	False	NA	-3	True	AATAAA	-14	NA	53028686	52979613	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
ES_00029362	chr19	-	4078	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	0	0	0	0	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	9945	False	NA	-3	True	AATAAA	-14	NA	53028645	52979613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
ES_00029368	chr19	-	2043	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	53.0806514236172	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATCAACAGTGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	53933058	53918291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
ES_00029369	chr19	-	838	5	FSM	ENSMUSG00000084957.4	ENSMUST00000236885.2	838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.9315197050548	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGACTGCTACGGA	NA	False	NA	NA	False	AATACA	-21	NA	53932611	53919390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932586
ES_00029370	chr19	-	2120	4	FSM	ENSMUSG00000084957.4	ENSMUST00000237049.2	2120	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	83.0220854150669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTGTTGGGCTTGTACA	NA	False	NA	NA	False	AATAAA	-13	NA	53932662	53919444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_53919934_53920560_53922002_53931896_53932011_53932586
ES_00029371	chr19	-	723	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	29	-90	8	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTGTTGGGCTTGTACA	NA	False	NA	NA	False	AATAAA	-13	NA	53932630	53919444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
ES_00029372	chr19	-	3832	21	FSM	ENSMUSG00000024978.12	ENSMUST00000061856.6	3832	21	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	9.97045635866283	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCTGAACTTGAATTTC	9003	False	NA	NA	False	GATAAA	-23	NA	55087883	55058165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_55059479_55061143_55061203_55063002_55063193_55063973_55064112_55064722_55064801_55066257_55066401_55066754_55067020_55067647_55067719_55068815_55068932_55069823_55069910_55070033_55070148_55071632_55071846_55072129_55072230_55075816_55075954_55076542_55076640_55077229_55077377_55079567_55079682_55082350_55082425_55084552_55084676_55085928_55086060_55087760
ES_00029373	chr19	-	2437	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	0	-174	0	155	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTGAATGAGCCTGTTAC	7441	False	NA	NA	False	NA	NA	NA	55304462	55286577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
ES_00029374	chr19	-	2176	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	0	-8	0	8	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTAGTTTGCTTTTT	7439	False	NA	1	True	AAAAAG	-3	NA	55304464	55286724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
ES_00029376	chr19	-	4674	8	FSM	ENSMUSG00000025077.15	ENSMUST00000182058.8	4664	8	0	-10	0	8	multi-exon	FALSE	canonical	3	162	junction_7	14.3498560043974	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATGGGTTTCATTATT	9062	False	NA	0	True	AATAAA	-28	NA	56535587	56517590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56530056_56531064_56531199_56532446_56534079_56535068
ES_00029377	chr19	-	4203	10	NIC	ENSMUSG00000025077.15	novel	4109	10	NA	NA	-13	15	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	64.7782542387661	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTCATTATTGCCTTAT	8057	False	NA	7	True	AATAAA	-35	NA	56536592	56517583	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528724_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536405
ES_00029378	chr19	-	4234	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	-108	-17	-13	15	multi-exon	FALSE	canonical	3	154	junction_5	33.6088612653799	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTCATTATTGCCTTAT	8057	False	NA	7	True	AATAAA	-35	NA	56536592	56517583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536405
ES_00029379	chr19	-	4083	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182276.3	4087	10	21	-17	21	15	multi-exon	FALSE	canonical	3	30	junction_9	50.5063252364383	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTCATTATTGCCTTAT	7995	False	NA	7	True	AATAAA	-35	NA	56536654	56517583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536618
ES_00029380	chr19	-	4071	10	NNC	ENSMUSG00000025077.15	novel	4087	10	NA	NA	15	6	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_9	51.9973883484712	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGATGGGTTTCATTA	7989	False	NA	-2	True	AATAAA	-26	NA	56536660	56517592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536627
ES_00029381	chr19	-	322	2	FSM	ENSMUSG00000025077.15	ENSMUST00000181992.2	322	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGAATTATGGGTCATAA	5195	False	NA	NA	False	ATTAAA	-21	NA	56529977	56528442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_56528724_56529936
ES_00029382	chr19	-	899	2	ISM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	26	17689	26	-6847	5prime_fragment	FALSE	canonical	3	276	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCGAGCTGTAGAGATG	8191	False	NA	NA	False	NA	NA	NA	56536458	56535289	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_56536136_56536405
ES_00029384	chr19	-	691	3	FSM	ENSMUSG00000035173.15	ENSMUST00000140705.2	691	3	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_2	4	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGGAGGGTAGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	56785940	56781393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_56781939_56783521_56783603_56785875
ES_00029385	chr19	-	1486	4	ISM	ENSMUSG00000025083.19	ENSMUST00000118800.8	3531	19	92414	-2	12769	2	3prime_fragment	FALSE	canonical	3	9	junction_1	1.88561808316413	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGTTTCCCTTGTATT	NA	False	NA	NA	False	AATAAA	-13	NA	56904216	56900790	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_56901841_56902556_56902686_56902801_56902996_56904103
ES_00029386	chr19	-	5560	16	NIC	ENSMUSG00000025085.17	novel	5927	17	NA	NA	-8	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	19.9193931188232	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGAGTGGCAGTCCTT	NA	False	NA	-7	True	AATAAA	-18	NA	57107464	57021703	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
ES_00029387	chr19	-	1653	15	ISM	ENSMUSG00000025085.17	ENSMUST00000111544.8	2231	22	62788	3872	0	0	internal_fragment	FALSE	canonical	0	0	junction_1	31.5342379528237	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAAAAAAAAAAACAATT	8216	False	NA	NA	False	AATGAA	-19	NA	57123140	57029485	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_57029855_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035504_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57121293_57121388_57123013
ES_00029389	chr19	-	930	7	FSM	ENSMUSG00000025092.8	ENSMUST00000236429.2	1510	7	28	552	0	-552	multi-exon	TRUE	canonical	2	6	junction_2	2.54405625374562	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACCTCTGCTCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	58849416	58797881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
ES_00029392	chr19	-	3473	9	NIC	ENSMUSG00000057858.9	novel	951	8	NA	NA	0	1492	intron_retention	FALSE	canonical	3	13	junction_8	105.606507256892	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAAGGGTTCTTCGTGG	9784	False	NA	NA	False	NA	NA	NA	60215118	60185525	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
ES_00029393	chr19	-	7033	8	FSM	ENSMUSG00000057858.9	ENSMUST00000238054.2	951	8	-8	-6074	0	5413	multi-exon	FALSE	canonical	3	34	junction_7	86.2054972440971	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCAGGTTGCCAGCAAT	9776	False	NA	NA	False	NA	NA	NA	60215126	60181604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
ES_00029394	chr19	-	2035	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9773	False	NA	NA	False	AATGAA	-25	NA	60215129	60187017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ES_00029395	chr19	-	1492	7	NIC	ENSMUSG00000057858.9	novel	951	8	NA	NA	2	-13	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	116.899885942345	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAGAACTGATACCTG	9803	False	NA	NA	False	AATGAA	-12	NA	60215099	60187030	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60215075
ES_00029396	chr19	-	1598	7	FSM	ENSMUSG00000057858.9	ENSMUST00000235293.2	1598	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	113.09533834582	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTGATTTATTTT	9793	False	NA	NA	False	NA	NA	NA	60215109	60187346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214663
ES_00029397	chr19	-	1846	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	-91	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTTGTTTGTTTTACAC	9793	False	NA	NA	False	NA	NA	NA	60215109	60187108	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ES_00029398	chr19	-	5792	9	FSM	ENSMUSG00000033417.17	ENSMUST00000081790.15	5792	9	0	0	0	0	multi-exon	FALSE	canonical	2	169	junction_2	23.687747360186	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTTTGATACCTGGT	6346	False	NA	1	True	ATTAAA	-28	NA	60569463	60513133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60525851_60525942_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
ES_00029400	chr19	-	5125	22	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_17	297.134752636728	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8754	False	NA	-31	True	AATAAA	-17	NA	60779081	60749554	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766582_60767791_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ES_00029401	chr19	-	5556	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	0	-431	0	431	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTCAAAACGAGTAAAAGTA	8754	False	NA	NA	False	NA	NA	NA	60779081	60749123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ES_00029403	chr19	-	1770	11	FSM	ENSMUSG00000024991.9	ENSMUST00000235706.2	2282	11	0	512	0	-512	multi-exon	FALSE	canonical	0	0	junction_6	403.570130212829	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTCTTGAAGAGAGA	8739	False	NA	NA	False	NA	NA	NA	60779096	60761944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ES_00029404	chr19	-	2377	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	55	-1123	0	-348	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTCTGATTCTTAACAC	NA	False	NA	NA	False	NA	NA	NA	60849862	60826062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
ES_00029406	chr19	-	2709	1	FSM	ENSMUSG00000074733.15	ENSMUST00000181469.2	841	1	-317	-1551	-317	2	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTGGTCATGGTGTC	NA	False	NA	-2	True	NA	NA	NA	61106128	61103419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61103400_61106100
ES_00029407	chr19	-	2864	4	FSM	ENSMUSG00000074733.15	ENSMUST00000180544.3	2568	4	0	-296	0	296	multi-exon	FALSE	canonical	3	24	junction_1	12.675435561221	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCATGTGAATGATTTTA	NA	False	NA	NA	False	AATAAA	-7	NA	61129200	61106272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61108891_61115444_61115506_61115875_61116003_61129142
ES_00029409	chr19	-	2301	5	FSM	ENSMUSG00000059326.8	ENSMUST00000235172.2	2277	5	0	-24	0	24	multi-exon	FALSE	canonical	3	120	junction_3	9.66953980290686	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTTGTCTGCATGTCTA	9871	False	NA	NA	False	NA	NA	NA	61215121	61212370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214823_61214962
ES_00029411	chr19	-	632	3	FSM	ENSMUSG00000059326.8	ENSMUST00000236872.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	0.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCAGTTCCAGGGAT	NA	False	NA	NA	False	NA	NA	NA	61213928	61213088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61213472_61213570_61213653_61213761
ES_00029412	chr19	-	1326	10	FSM	ENSMUSG00000059326.8	ENSMUST00000237877.2	1326	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	40.1850657106946	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCCCGCCCCCAACGTGA	9817	False	NA	NA	False	NA	NA	NA	61215803	61213441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709
ES_00029414	chr19	-	452	3	Intergenic	novelGene_2143	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_2	4	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACAGTGTCAGGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	61301971	61286917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_61287117_61287295_61287423_61301845
ES_00029415	chr19	+	344	1	Intergenic	novelGene_2021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCTCACCAGCCCCTTA	NA	False	NA	NA	False	NA	NA	NA	3638424	3638768	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3638400_3638800
ES_00029416	chr19	+	224	1	Intergenic	novelGene_2024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATTTATTTAT	NA	False	NA	NA	False	TATAAA	-1	NA	3756097	3756321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3756100_3756300
ES_00029417	chr19	+	216	1	Intergenic	novelGene_2026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCGAGGCTAGACTACATA	NA	False	NA	NA	False	NA	NA	NA	3871529	3871745	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3871500_3871700
ES_00029418	chr19	+	203	1	Intergenic	novelGene_2033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTCTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	4360196	4360399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_4360200_4360400
ES_00029419	chr19	+	223	1	Intergenic	novelGene_2037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATGCATTCTTTATGG	NA	False	NA	NA	False	NA	NA	NA	4903650	4903873	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_4903600_4903900
ES_00029421	chr19	+	265	1	Intergenic	novelGene_2039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	5127807	5128072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5127800_5128100
ES_00029422	chr19	+	206	1	Intergenic	novelGene_2042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTATAAATATTATT	1085	False	NA	NA	False	AATAAA	-6	NA	5451342	5451548	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5451300_5451500
ES_00029423	chr19	+	252	1	Intergenic	novelGene_2043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGTTGTAAATCTCTA	NA	False	NA	NA	False	NA	NA	NA	5624185	5624437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5624200_5624400
ES_00029424	chr19	+	218	1	Intergenic	novelGene_2044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCCAAGAGGCCAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	5680672	5680890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5680700_5680900
ES_00029425	chr19	+	208	1	Intergenic	novelGene_2046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAGAGGCAGAGAAAGGC	NA	False	NA	NA	False	NA	NA	NA	5871193	5871401	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5871200_5871400
ES_00029427	chr19	+	268	1	Intergenic	novelGene_2050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGTTAAATGCTTTATAG	NA	False	NA	NA	False	TTTAAA	-20	NA	6642312	6642580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_6642300_6642600
ES_00029428	chr19	+	218	1	Intergenic	novelGene_2051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACGGTTCTTAAATGCT	7903	False	NA	NA	False	NA	NA	NA	6653051	6653269	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_6653100_6653300
ES_00029430	chr19	+	206	1	Intergenic	novelGene_2053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTTATAATATTGTGG	546	False	NA	NA	False	NA	NA	NA	6986588	6986794	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_6986600_6986800
ES_00029431	chr19	+	201	1	Intergenic	novelGene_2062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATCATTTTGTGGAGGCT	NA	False	NA	NA	False	AAAAAG	-1	NA	8015745	8015946	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_8015700_8015900
ES_00029432	chr19	+	225	1	Intergenic	novelGene_2066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTCTTAACTACTAAGC	387	False	NA	NA	False	NA	NA	NA	8827100	8827325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_8827100_8827300
ES_00029433	chr19	+	224	1	Intergenic	novelGene_2068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAACCATTTTAAATTCTA	NA	False	NA	NA	False	NA	NA	NA	10119972	10120196	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_10120000_10120200
ES_00029435	chr19	+	207	1	Intergenic	novelGene_2070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10231346	10231553	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_10231300_10231600
ES_00029436	chr19	+	282	1	Intergenic	novelGene_2073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAGAGTAATTTAGAACT	NA	False	NA	NA	False	NA	NA	NA	12522097	12522379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_12522100_12522400
ES_00029437	chr19	+	230	1	Intergenic	novelGene_2075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACATTTCTTAAGTTAGG	NA	False	NA	NA	False	NA	NA	NA	12689156	12689386	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_12689200_12689400
ES_00029439	chr19	+	233	1	Intergenic	novelGene_2079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	726	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAGGAACAAGGTGACTA	NA	False	NA	NA	False	NA	NA	NA	14936370	14936603	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_14936400_14936600
ES_00029441	chr19	+	203	1	Intergenic	novelGene_2080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1933	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTCTTTTTTGGTT	2114	False	NA	NA	False	NA	NA	NA	16135428	16135631	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_16135400_16135600
ES_00029442	chr19	+	217	1	Intergenic	novelGene_2082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAACTAGACAGTGGTAGA	NA	False	NA	NA	False	NA	NA	NA	16684144	16684361	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_16684100_16684400
ES_00029444	chr19	+	363	1	Intergenic	novelGene_2083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCTATTACCTGTAACT	NA	False	NA	NA	False	NA	NA	NA	17670543	17670906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_17670500_17670900
ES_00029450	chr19	+	307	1	Intergenic	novelGene_2094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGTTCCTTTTAGGGC	NA	False	NA	NA	False	NA	NA	NA	24516995	24517302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_24517000_24517300
ES_00029451	chr19	+	473	1	Intergenic	novelGene_2096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTGAAAATCCCATGTAAA	5834	False	NA	NA	False	AATAAA	-37	NA	25010492	25010965	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_25010500_25011000
ES_00029454	chr19	+	276	1	Intergenic	novelGene_2100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAAAAGAAACCTCA	5069	False	NA	NA	False	NA	NA	NA	28898110	28898386	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_28898100_28898400
ES_00029455	chr19	+	404	1	Intergenic	novelGene_2102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGTAAACTTTTATGAAC	3369	False	NA	NA	False	NA	NA	NA	29502809	29503213	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_29502800_29503200
ES_00029456	chr19	+	271	1	Intergenic	novelGene_2104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	966	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGATTGTAGAGAACAAGAA	NA	False	NA	NA	False	AATATA	-30	NA	30515974	30516245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_30516000_30516200
ES_00029457	chr19	+	237	1	Intergenic	novelGene_2105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAATAAAAAAGA	NA	False	NA	NA	False	AATAAA	-43	NA	32287110	32287347	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_32287100_32287300
ES_00029458	chr19	+	275	1	Intergenic	novelGene_2109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTATCAAACACCTGCAGC	NA	False	NA	NA	False	TTTAAA	-4	NA	33649677	33649952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_33649700_33650000
ES_00029459	chr19	+	251	1	Intergenic	novelGene_2110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACTGTTGCTTTTTTAAAA	NA	False	NA	NA	False	TATAAA	-6	NA	33650155	33650406	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_33650200_33650400
ES_00029460	chr19	+	440	1	Intergenic	novelGene_2111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACAGAAAACCACTTATC	NA	False	NA	NA	False	ATTAAA	-36	NA	33651013	33651453	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_33651000_33651500
ES_00029461	chr19	+	209	1	Intergenic	novelGene_2112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATTTCTTTATTTCTCAA	9016	False	NA	NA	False	NA	NA	NA	34959352	34959561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_34959400_34959600
ES_00029463	chr19	+	350	1	Intergenic	novelGene_2115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCTATTGATTGGTTGC	NA	False	NA	NA	False	NA	NA	NA	37130279	37130629	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_37130300_37130600
ES_00029465	chr19	+	336	1	Intergenic	novelGene_2116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACTTACATATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	37345469	37345805	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_37345500_37345800
ES_00029466	chr19	+	222	1	Intergenic	novelGene_2117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCTCAGCACTTGGGA	NA	False	NA	NA	False	NA	NA	NA	37451365	37451587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_37451400_37451600
ES_00029467	chr19	+	213	1	Intergenic	novelGene_2120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCTGTTGTTATTATTGT	NA	False	NA	NA	False	NA	NA	NA	38829682	38829895	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_38829700_38829900
ES_00029468	chr19	+	900	1	Intergenic	novelGene_2121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTACCCAGCTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	38862028	38862928	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_38862000_38862900
ES_00029469	chr19	+	1715	1	Intergenic	novelGene_2123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACATACAGATGCCAGG	NA	False	NA	NA	False	AATAAA	-34	NA	41513699	41515414	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_41513700_41515400
ES_00029470	chr19	+	6619	1	Intergenic	novelGene_2124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTGTAGTCACTGC	NA	False	NA	NA	False	ATTAAA	-18	NA	41577982	41584601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_41578000_41584600
ES_00029471	chr19	+	240	1	Intergenic	novelGene_2126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGGGGTTGATCAGAGA	8562	False	NA	NA	False	NA	NA	NA	42277252	42277492	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_42277300_42277500
ES_00029473	chr19	+	200	1	Intergenic	novelGene_2128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTCTTATTCTTTTGA	9961	False	NA	NA	False	NA	NA	NA	43622365	43622565	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_43622400_43622600
ES_00029474	chr19	+	213	1	Intergenic	novelGene_2132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGACTGGAAAGAGGGCTC	NA	False	NA	NA	False	NA	NA	NA	45918788	45919001	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_45918800_45919000
ES_00029476	chr19	+	220	1	Intergenic	novelGene_2135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTCTTTTAATATTTAA	NA	False	NA	NA	False	NA	NA	NA	46206532	46206752	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_46206500_46206800
ES_00029477	chr19	+	206	1	Intergenic	novelGene_2137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTTCAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	47561359	47561565	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_47561400_47561600
ES_00029478	chr19	+	226	1	Intergenic	novelGene_2138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGCTGACTTTTACAGTG	NA	False	NA	NA	False	NA	NA	NA	47777123	47777349	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_47777100_47777300
ES_00029480	chr19	+	208	1	Intergenic	novelGene_2140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGGAAGGATAATGATG	3183	False	NA	NA	False	AAAAAG	-2	NA	55222896	55223104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_55222900_55223100
ES_00029481	chr19	+	201	1	Intergenic	novelGene_2141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTCGGTTCTTAATGCT	NA	False	NA	NA	False	NA	NA	NA	56394048	56394249	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_56394000_56394200
ES_00029483	chr19	+	211	1	Intergenic	novelGene_2142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAAGCTTACTAAAGGC	NA	False	NA	NA	False	NA	NA	NA	60561174	60561385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_60561200_60561400
ES_00029486	chr19	+	1767	9	NIC	ENSMUSG00000045098.20	novel	772	6	NA	NA	-145	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	93.7253300874422	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAGAATTGACCAAA	NA	False	NA	4	True	AATAAA	-14	NA	3818401	3855463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_3818703_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
ES_00029487	chr19	+	2693	12	NIC	ENSMUSG00000024843.16	novel	2319	12	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	75.2636138532288	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	5721	False	NA	4	True	AATAAA	-15	NA	3901773	3944367	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_3902414_3914647_3914760_3931997_3932121_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ES_00029490	chr19	+	2269	11	FSM	ENSMUSG00000036908.18	ENSMUST00000162708.7	2266	11	-3	0	-3	0	multi-exon	FALSE	canonical	2	7	junction_5	6.90579466824782	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTGTAGGTTGTGTTCT	5182	False	NA	NA	False	AATAAA	-20	NA	3985182	3999340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
ES_00029491	chr19	+	412	4	FSM	ENSMUSG00000036908.18	ENSMUST00000236920.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	4.64279609239471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACCTCAGCAGCGCCC	5285	False	NA	NA	False	NA	NA	NA	3985285	3991933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991884
ES_00029494	chr19	+	1469	11	FSM	ENSMUSG00000024871.12	ENSMUST00000025806.5	1469	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.03960780543711	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGGAGTCTGCCCTTTCC	6246	False	NA	NA	False	AATAAA	-16	NA	4053312	4057005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4053402_4053510_4053815_4053944_4054025_4054095_4054168_4054322_4054433_4054512_4054649_4054762_4054817_4056109_4056268_4056357_4056440_4056551_4056649_4056718
ES_00029495	chr19	+	867	6	FSM	ENSMUSG00000024835.16	ENSMUST00000237125.2	854	6	-13	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	103.619303220973	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGAGTGATGTAGCAAGC	3575	False	NA	NA	False	NA	NA	NA	4198617	4200823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705
ES_00029496	chr19	+	2817	8	FSM	ENSMUSG00000024835.16	ENSMUST00000236023.2	2814	8	-3	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	88.4835970040522	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTTGACCTACTGTTGT	3610	False	NA	16	True	AATAAA	-17	NA	4198652	4204032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520
ES_00029498	chr19	+	927	2	FSM	ENSMUSG00000045826.10	ENSMUST00000061086.9	927	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCACTCTTGTGTCCCG	388	False	NA	NA	False	NA	NA	NA	4204604	4206750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4204703_4205921
ES_00029500	chr19	+	375	2	FSM	ENSMUSG00000040385.8	ENSMUST00000236921.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	3	3692	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTGCCCCAGATCGT	5861	False	NA	NA	False	AAGAAA	-16	NA	4244647	4245103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4244690_4244770
ES_00029501	chr19	+	422	3	FSM	ENSMUSG00000118245.2	ENSMUST00000236928.2	835	3	-34	447	-34	-447	multi-exon	FALSE	canonical	2	2	junction_2	1	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCAGTGACCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	4251743	4252792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4251798_4252125_4252238_4252536
ES_00029502	chr19	+	8088	37	NNC	ENSMUSG00000067889.8	novel	8299	37	NA	NA	-346	-8	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_1	10.212669147246	81	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	5215	False	NA	5	True	ATTAAA	-15	NA	4762065	4802380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_4762341_4768846_4769026_4774107_4774260_4774657_4774832_4775928_4776021_4776167_4776249_4776609_4776726_4779089_4779203_4779329_4779518_4781301_4781420_4781953_4782113_4782415_4782719_4783681_4783836_4784066_4784938_4787369_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ES_00029503	chr19	+	3657	2	ISM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	3017	0	-1808	0	3prime_fragment	FALSE	canonical	3	32	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4809615	4815968	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_4812676_4815371
ES_00029504	chr19	+	5773	1	FSM	ENSMUSG00000033760.18	ENSMUST00000183332.2	5670	1	41	-144	41	144	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGAACTCTTATGTGATT	NA	False	NA	NA	False	NA	NA	NA	4811464	4817237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4811500_4817200
ES_00029505	chr19	+	2776	1	FSM	ENSMUSG00000067872.3	ENSMUST00000088653.3	3163	1	129	258	129	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGTCCTTAAAAAAATATA	NA	False	NA	NA	False	AATAGA	-19	NA	4889522	4892298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4889500_4892300
ES_00029507	chr19	+	2159	13	FSM	ENSMUSG00000083282.4	ENSMUST00000237784.2	2093	13	-59	-7	0	0	multi-exon	FALSE	canonical	3	86	junction_7	9.02773504263389	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTAAGTGCTTAGTC	NA	False	NA	10	True	AATAAA	-21	NA	4905189	4910946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ES_00029509	chr19	+	2537	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162720.8	2523	3	-14	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	82.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATGTCTTTTTGTTTGTT	NA	False	NA	21	True	NA	NA	NA	4928717	4935424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4929056_4930148_4930427_4933503
ES_00029510	chr19	+	2190	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	26.9770272639518	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	4323	False	NA	18	True	ATTAAA	-19	NA	5074152	5081997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_5074306_5074538_5074621_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ES_00029512	chr19	+	4423	10	FSM	ENSMUSG00000024883.9	ENSMUST00000225427.2	4503	10	80	0	80	0	multi-exon	FALSE	canonical	1	3	junction_4	10.8320512061813	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGCTTGATAACTAGAA	NA	False	NA	4	True	NA	NA	NA	5100588	5107099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5100970_5101101_5101283_5101381_5101497_5101585_5101659_5101801_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ES_00029517	chr19	+	209	1	Intergenic	novelGene_2040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAGAAAAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	5379718	5379927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5379700_5379900
ES_00029518	chr19	+	394	1	FSM	ENSMUSG00000117959.2	ENSMUST00000237256.2	1266	1	-8	880	-8	-880	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGAAACTAAGAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	5438355	5438749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5438400_5438700
ES_00029519	chr19	+	1528	3	NNC	ENSMUSG00000047423.11	novel	1528	2	NA	NA	0	9530	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	82	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATACTGAGGATTCCAGA	260	False	NA	NA	False	NA	NA	NA	5475184	5486871	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_5475337_5475978_5477323_5486839
ES_00029520	chr19	+	899	2	Genic_Genomic	ENSMUSG00000117771.2_ENSMUSG00002076078.1	novel	728	1	NA	NA	40	4524	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCTCTGGGTTCGTCAT	5671	False	NA	NA	False	NA	NA	NA	5485967	5491277	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_5486840_5491250
ES_00029521	chr19	+	721	4	FSM	ENSMUSG00000024911.8	ENSMUST00000226017.2	721	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_2	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGGTCCTTGTTCCA	2756	False	NA	15	True	AATAAA	-15	NA	5513671	5515077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5513741_5513814_5514244_5514361_5514460_5514952
ES_00029523	chr19	+	1512	11	NIC	ENSMUSG00000024909.16	novel	1557	11	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	24.6771149042995	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCTGGCTGAGGTGGGTG	NA	False	NA	9	True	AATAAA	-14	NA	5524716	5531880	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530616_5530770_5531588
ES_00029524	chr19	+	1781	10	FSM	ENSMUSG00000024909.16	ENSMUST00000070118.14	1781	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	6.34209919681348	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524777	5531881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ES_00029525	chr19	+	463	2	FSM	ENSMUSG00000024909.16	ENSMUST00000167920.2	463	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGTACTAGCCATCTTC	NA	False	NA	NA	False	NA	NA	NA	5524804	5525496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5525207_5525435
ES_00029527	chr19	+	574	4	FSM	ENSMUSG00000109695.2	ENSMUST00000210638.2	1268	4	121	573	121	38	multi-exon	FALSE	canonical	1	2	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGTATGTGGATTATT	2467	False	NA	NA	False	AAAACA	-40	NA	5562676	5599823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5562975_5567680_5567721_5581567_5581687_5599706
ES_00029528	chr19	+	883	2	FSM	ENSMUSG00000024925.12	ENSMUST00000127071.2	869	2	-14	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGTCACAGATCCCTTC	5045	False	NA	-63	True	NA	NA	NA	5651900	5652895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5652109_5652220
ES_00029530	chr19	+	207	2	Intergenic	novelGene_2045	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	798	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGCCATTCTTATTCAA	NA	False	NA	NA	False	NA	NA	NA	5832595	5842680	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5832631_5842508
ES_00029532	chr19	+	432	2	FSM	ENSMUSG00000110156.3	ENSMUST00000210917.2	410	2	-22	0	-22	0	multi-exon	FALSE	canonical	3	17	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTCACACTACACAG	9333	False	NA	0	True	NA	NA	NA	5962958	5964854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5963101_5964564
ES_00029533	chr19	+	1237	6	FSM	ENSMUSG00000024807.19	ENSMUST00000129081.8	842	6	-37	-358	25	-90	multi-exon	FALSE	canonical	2	6	junction_1	47.2804399302714	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTACCACATGCTGGG	764	False	NA	NA	False	NA	NA	NA	6096630	6099591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6097012_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179
ES_00029534	chr19	+	2437	16	NIC	ENSMUSG00000024807.19	novel	3464	16	NA	NA	25	-852	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	31.1593752611741	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCAGCTCTAACCTCCC	764	False	NA	NA	False	NA	NA	NA	6096630	6102887	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6097012_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
ES_00029535	chr19	+	3387	16	FSM	ENSMUSG00000024807.19	ENSMUST00000156550.8	3363	16	-24	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	32.3134646857931	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTGGTAGAACGTGTCAC	801	False	NA	10	True	AATAAA	-13	NA	6096667	6103739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102589
ES_00029537	chr19	+	1373	2	Genic_Genomic	ENSMUSG00000075227.7	novel	1281	1	NA	NA	0	54916	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCCAAAGTGTTCCCAT	2533	False	NA	NA	False	TATAAA	-25	NA	6111221	6167418	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_6112503_6167326
ES_00029538	chr19	+	1482	3	FSM	ENSMUSG00000039699.15	ENSMUST00000045042.8	1391	3	-91	0	-91	0	multi-exon	FALSE	canonical	0	0	junction_1	1	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGTATGTATATGTACA	NA	False	NA	NA	False	AATAAA	-22	NA	6214377	6222506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6214584_6216497_6216603_6221335
ES_00029539	chr19	+	761	3	FSM	ENSMUSG00000039699.15	ENSMUST00000139326.8	865	3	104	0	69	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACCAACTGGCCCCACCA	NA	False	NA	NA	False	NA	NA	NA	6214587	6221798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6214781_6216497_6216603_6221335
ES_00029541	chr19	+	3009	9	FSM	ENSMUSG00000024947.18	ENSMUST00000156154.2	3002	9	-7	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	107.87463789047	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGTATGTATGTGTTTC	614	False	NA	23	True	GATAAA	-23	NA	6385068	6390921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6385101_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388992_6389368_6389534_6389716
ES_00029543	chr19	+	605	6	FSM	ENSMUSG00000024948.16	ENSMUST00000148410.8	647	6	0	42	0	-13	multi-exon	FALSE	canonical	3	17	junction_1	3.42928563989645	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCAGTCACTTTACTGT	1447	False	NA	NA	False	NA	NA	NA	6391245	6392862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6391376_6391488_6391547_6391773_6391998_6392284_6392341_6392639_6392688_6392773
ES_00029544	chr19	+	1458	9	FSM	ENSMUSG00000024948.16	ENSMUST00000137095.8	1458	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	5.3619026473818	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGGTATTAAAGCTGG	23	False	NA	-18	True	NA	NA	NA	6396578	6403870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6403221_6403307_6403364_6403469
ES_00029545	chr19	+	2863	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113489.8	2863	13	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	368.940026366828	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTTTCTTTTCTTTTAAA	631	False	NA	22	True	AATAAA	-22	NA	6413748	6427233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6426325
ES_00029546	chr19	+	2874	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTCTGTTGCAAAATA	NA	False	NA	14	True	AATAAA	-24	NA	6434428	6448489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
ES_00029547	chr19	+	2327	17	NIC	ENSMUSG00000032946.17	novel	2296	17	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	87.1697338529836	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATCATCAGCCTAAAACCC	NA	False	NA	19	True	AATAAA	-21	NA	6449343	6465240	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6449548_6451745_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ES_00029549	chr19	+	635	5	NIC	ENSMUSG00000032946.17	novel	573	5	NA	NA	-52	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	118.986081118759	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449433	6453668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6449548_6451745_6451894_6452501_6452605_6453053_6453117_6453461
ES_00029550	chr19	+	573	5	FSM	ENSMUSG00000032946.17	ENSMUST00000113475.8	573	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	121.807994401024	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGAGTGAGGGTCATG	NA	False	NA	9	True	NA	NA	NA	6449485	6453663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6449548_6451750_6451894_6452501_6452605_6453053_6453117_6453461
ES_00029551	chr19	+	608	5	NIC	ENSMUSG00000032946.17	novel	573	5	NA	NA	-37	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	121.807994401024	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449448	6453668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6449548_6451750_6451894_6452501_6452605_6453060_6453117_6453461
ES_00029553	chr19	+	626	5	NNC	ENSMUSG00000032946.17	novel	2124	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	122.050194592225	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449893	6453668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_6449999_6451745_6451894_6452501_6452605_6453053_6453117_6453461
ES_00029554	chr19	+	2552	4	ISM	ENSMUSG00000033768.18	ENSMUST00000113458.8	3503	7	15779	2	-3598	-1	3prime_fragment	FALSE	canonical	1	1	junction_1	2.05480466765633	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTCCTGTGTAGTTTG	NA	False	NA	13	True	AAAAAG	-23	NA	6563636	6583245	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_6563836_6566952_6567279_6569278_6569358_6581297
ES_00029556	chr19	+	1172	3	FSM	ENSMUSG00000024959.15	ENSMUST00000235240.2	1169	3	-3	0	-3	0	multi-exon	FALSE	canonical	3	98	junction_1	2.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9381	False	NA	10	True	AATAAA	-15	NA	6919928	6929261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6920415_6928007_6928199_6928766
ES_00029557	chr19	+	552	3	FSM	ENSMUSG00000056612.8	ENSMUST00000235195.2	552	3	0	0	0	0	multi-exon	FALSE	canonical	3	3100	junction_2	95	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACAGGCTTGGCTGGTCTT	3061	False	NA	NA	False	AATAAA	-26	NA	6953816	6954689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6953996_6954225_6954259_6954349
ES_00029558	chr19	+	1264	10	NIC	ENSMUSG00000036278.8	novel	1228	11	NA	NA	-66	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	17.6320415405843	1819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	8466	False	NA	6	True	AATAAA	-16	NA	7034111	7175422	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_7034551_7042832_7042935_7043454_7043572_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
ES_00029559	chr19	+	738	8	NNC	ENSMUSG00000036278.8	novel	1228	11	NA	NA	129049	-13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	18.1849904468224	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCTCAGCCCTCACT	NA	False	NA	-7	True	AATAAA	-3	NA	7163226	7175409	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_7163372_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
ES_00029560	chr19	+	207	2	Intergenic	novelGene_2056	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCTTACTATATGGAC	NA	False	NA	NA	False	NA	NA	NA	7196620	7197555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7196793_7197520
ES_00029562	chr19	+	212	1	Intergenic	novelGene_2060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	7321242	7321454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7321200_7321500
ES_00029564	chr19	+	839	1	FSM	ENSMUSG00000024761.4	ENSMUST00000025669.4	504	1	32	-367	32	367	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGTTGGAACATGTGAC	NA	False	NA	NA	False	AATAAA	-24	NA	7645683	7646522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7645700_7646500
ES_00029566	chr19	+	2360	4	FSM	ENSMUSG00000108414.2	ENSMUST00000205539.2	2348	4	-12	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	137.453830632528	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTGTGATGGCTTAT	NA	False	NA	24	True	AATAAA	-13	NA	8700838	8703805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8701554_8701766_8702888_8703145_8703467_8703602
ES_00029577	chr19	+	212	1	Intergenic	novelGene_2067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCCACTTTCAAACAGCT	1378	False	NA	NA	False	NA	NA	NA	8842600	8842812	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_8842600_8842800
ES_00029578	chr19	+	3024	6	FSM	ENSMUSG00000096740.9	ENSMUST00000187504.7	3164	6	140	0	-52	0	multi-exon	FALSE	canonical	0	0	junction_1	1508.84970755871	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	15	True	NA	NA	NA	8861235	8869991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8861444_8861519_8861680_8864398_8864615_8866487_8866613_8867366_8867465_8867774
ES_00029582	chr19	+	3149	5	FSM	ENSMUSG00000071644.11	ENSMUST00000135025.2	1272	5	-1859	-18	-1859	18	multi-exon	FALSE	canonical	3	8905	junction_2	398.043025312591	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTTCTCTGTCTGTC	4347	False	NA	NA	False	NA	NA	NA	8947908	8955861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ES_00029585	chr19	+	1303	7	NIC	ENSMUSG00000069833.14	novel	1188	7	NA	NA	0	170	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	26.9222130508537	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTCTGTTTCCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	8966647	9054448	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9022988_9023081_9053939
ES_00029587	chr19	+	1278	1	Genic_Genomic	ENSMUSG00000100141.2	novel	NA	NA	NA	NA	-298	-293	mono-exon	FALSE	NA	NA	NA	NA	NA	580	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCTACAATCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	9584169	9585447	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_9584200_9585400
ES_00029588	chr19	+	793	4	NNC	ENSMUSG00000118100.2	novel	582	3	NA	NA	-42	-30	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	5.18544972870135	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCAATTAAATGTTCCT	NA	False	NA	NA	False	NA	NA	NA	9877011	9879995	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_9877385_9878231_9878442_9879061_9879157_9879880
ES_00029589	chr19	+	202	2	Intergenic	novelGene_2069	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAATGCATCTCAGCCTT	NA	False	NA	NA	False	NA	NA	NA	10142377	10143768	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_10142431_10143619
ES_00029591	chr19	+	1310	5	FSM	ENSMUSG00000010663.6	ENSMUST00000237221.2	1310	5	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_1	26.688012290165	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAATCACA	NA	False	NA	NA	False	NA	NA	NA	10160348	10164737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118
ES_00029594	chr19	+	3639	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	2	94	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	93.086841175324	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATTTGTTGAGGTGTCTG	NA	False	NA	30	True	AATAAA	-35	NA	10502631	10525111	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509624_10509699_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ES_00029595	chr19	+	2769	1	FSM	ENSMUSG00000117955.2	ENSMUST00000237729.2	3034	1	-266	531	-266	-531	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACAAATACACAACTCTAA	NA	False	NA	NA	False	NA	NA	NA	10550609	10553378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10550600_10553400
ES_00029596	chr19	+	371	4	FSM	ENSMUSG00000034445.9	ENSMUST00000236743.2	368	4	-3	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	33.8919852865934	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATCGATGTGCATCCTCT	NA	False	NA	NA	False	NA	NA	NA	10554811	10559723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10554928_10556345_10556439_10557826_10557927_10559661
ES_00029598	chr19	+	2685	8	FSM	ENSMUSG00000034445.9	ENSMUST00000235271.2	2661	8	170	-194	130	194	multi-exon	FALSE	canonical	1	4	junction_1	32.1856857523176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATAATTTTAAACAA	16	False	NA	NA	False	NA	NA	NA	10554984	10567387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10555258_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ES_00029599	chr19	+	3030	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	-282	-1274	0	0	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554535	10567186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ES_00029604	chr19	+	452	4	FSM	ENSMUSG00000048832.10	ENSMUST00000237437.2	452	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	46.2673390921357	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATCGAAGGCATGAAGAT	NA	False	NA	NA	False	NA	NA	NA	10666126	10688681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10666261_10683573_10683673_10687633_10687806_10688634
ES_00029605	chr19	+	4253	20	FSM	ENSMUSG00000046139.9	ENSMUST00000238190.2	3158	20	0	-1095	0	7	multi-exon	FALSE	canonical	3	28	junction_5	81.8323060642279	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCATCTCTTTTTGCT	NA	False	NA	28	True	AATAAA	-18	NA	11889806	11922462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899284_11899359_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
ES_00029606	chr19	+	216	1	Intergenic	novelGene_2072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	3580	False	NA	NA	False	NA	NA	NA	11962219	11962435	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_11962200_11962400
ES_00029608	chr19	+	232	2	Intergenic	novelGene_2077	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCATCTCGCCAGCCCC	3543	False	NA	NA	False	NA	NA	NA	14667932	14679787	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_14667961_14679583
ES_00029609	chr19	+	227	2	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTGTGTGTGAGTGTC	NA	False	NA	NA	False	NA	NA	NA	15922648	15928761	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_15922700_15928585
ES_00029610	chr19	+	266	1	FSM	ENSMUSG00000117711.2	ENSMUST00000235413.2	267	1	-40	41	-40	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACCCAAGAGGGCGGCT	NA	False	NA	NA	False	NA	NA	NA	16002774	16003040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_16002800_16003000
ES_00029612	chr19	+	1340	9	FSM	ENSMUSG00000039126.11	ENSMUST00000224059.2	1377	9	37	0	37	0	multi-exon	FALSE	canonical	2	3	junction_1	27.7913543210834	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTACAGAGCTTCCTTCTA	NA	False	NA	NA	False	NA	NA	NA	17116139	17198558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_17116193_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
ES_00029614	chr19	+	1604	10	NNC	ENSMUSG00000037847.15	novel	1768	10	NA	NA	9	2	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	32.8389260136259	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGTGTGTCTCTGTGA	NA	False	NA	NA	False	CATAAA	-18	NA	18609334	18629293	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18625715_18625900_18628599
ES_00029615	chr19	+	1714	8	FSM	ENSMUSG00000024726.11	ENSMUST00000235736.2	1714	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	444.181981459245	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGGTGCCTTCTTATTC	NA	False	NA	NA	False	AATAAA	-45	NA	18648242	18681586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_18648856_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
ES_00029616	chr19	+	4260	2	FSM	ENSMUSG00000024750.12	ENSMUST00000133175.2	4260	2	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTACACCAGAAAAGGACT	NA	False	NA	NA	False	NA	NA	NA	21253403	21258335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_21257115_21257786
ES_00029618	chr19	+	5258	3	Intergenic	novelGene_2087	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	464	junction_2	1482	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGCTGAGTAAAGGGGTA	1095	False	NA	NA	False	NA	NA	NA	22699753	22705272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_22700550_22700763_22704781_22704827
ES_00029619	chr19	+	529	2	Genic_Genomic	ENSMUSG00000044424.5	novel	571	1	NA	NA	26	49	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGCTCAGAACTGAACAA	NA	False	NA	NA	False	AATAAA	-31	NA	23597138	23597732	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_23597389_23597453
ES_00029620	chr19	+	665	1	FSM	ENSMUSG00000082107.2	ENSMUST00000118970.2	1111	1	-608	1054	-608	-1054	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGTGGTTTAGCAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	24266471	24267136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_24266500_24267100
ES_00029621	chr19	+	5110	8	ISM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	-243	9156	-243	-644	5prime_fragment	FALSE	canonical	3	26	junction_1	20.4230761839721	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTATATATATATATAC	NA	False	NA	NA	False	NA	NA	NA	25214095	25402704	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_25214682_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501
ES_00029622	chr19	+	5537	14	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-226	-1	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	13.2338994508254	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTGCCCCTGCTTC	NA	False	NA	5	True	AATAAA	-14	NA	25214112	25411859	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ES_00029623	chr19	+	5281	13	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-215	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_7	18.9839113169254	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214123	25411860	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ES_00029624	chr19	+	5287	11	NIC	ENSMUSG00000032702.17	novel	3655	6	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	24.1072603171742	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	459	False	NA	6	True	AATAAA	-15	NA	25384069	25411860	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_25384398_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ES_00029626	chr19	+	2333	4	FSM	ENSMUSG00000048138.11	ENSMUST00000053068.7	2337	4	0	4	0	-4	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACCCAGTATTTGTTGA	NA	False	NA	NA	False	AATAAA	-17	NA	25649774	25656351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_25650123_25650779_25651341_25652914_25653018_25655030
ES_00029627	chr19	+	464	4	FSM	ENSMUSG00000024924.15	ENSMUST00000164746.8	454	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	4	junction_1	12.2565175405668	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACGGGGATCCTGATT	NA	False	NA	NA	False	NA	NA	NA	27194409	27212256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_27194533_27194942_27195097_27207595_27207716_27212189
ES_00029628	chr19	+	440	1	FSM	ENSMUSG00000092617.2	ENSMUST00000077493.7	440	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAAAGGTTCCTGCCAAT	NA	False	NA	NA	False	NA	NA	NA	27835457	27835897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_27835500_27835900
ES_00029633	chr19	+	819	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5892	29	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.2374789822141	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGCAGTAATGCAATTAAA	NA	False	NA	33	True	AATAAA	-24	NA	29681225	29685855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_29681401_29681868_29682117_29684207_29684322_29685573
ES_00029634	chr19	+	3960	3	FSM	ENSMUSG00000024817.14	ENSMUST00000134518.8	3231	3	-88	-641	-88	641	multi-exon	FALSE	canonical	3	253	junction_1	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAATGTTTAAGTTCTTG	3997	False	NA	NA	False	NA	NA	NA	30007824	30036853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_30008332_30016463_30016698_30033634
ES_00029638	chr19	+	1397	9	FSM	ENSMUSG00000024778.14	ENSMUST00000025691.13	1481	9	16	68	0	-62	multi-exon	FALSE	canonical	1	1	junction_8	3.55096817783545	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCTATGTGGAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	34268081	34305104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34268145_34284524_34284679_34292578_34292717_34293968_34294078_34295989_34296052_34296182_34296237_34296709_34296790_34297960_34297986_34304392
ES_00029640	chr19	+	857	6	FSM	ENSMUSG00000041180.14	ENSMUST00000149629.9	4491	6	-23	3657	7	-3657	multi-exon	FALSE	canonical	3	18	junction_3	6.15142259969188	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTTTTACTCTTAGG	NA	False	NA	NA	False	NA	NA	NA	36532045	36564890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765
ES_00029641	chr19	+	3864	21	FSM	ENSMUSG00000041180.14	ENSMUST00000169036.9	3842	21	-22	0	7	0	multi-exon	FALSE	canonical	3	14	junction_10	5.91840350094516	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTGCACCCAACCAGCA	NA	False	NA	NA	False	NA	NA	NA	36532045	36597642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765_36564831_36572608_36572655_36574476_36574587_36576286_36576436_36576995_36577120_36578828_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ES_00029643	chr19	+	1013	1	FSM	ENSMUSG00000117988.2	ENSMUST00000237246.2	946	1	-59	-8	-59	8	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATCTCTGTAAACAGTT	405	False	NA	NA	False	NA	NA	NA	37376795	37377808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_37376800_37377800
ES_00029646	chr19	+	2506	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	126.962033792356	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043401	38062869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048517_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00029647	chr19	+	2683	10	FSM	ENSMUSG00000024989.16	ENSMUST00000237408.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	135.940982110929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043536	38062869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_38043766_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
ES_00029648	chr19	+	2621	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_2	120.180419924933	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043539	38062869	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_38043766_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00029649	chr19	+	208	2	Antisense	novelGene_ENSMUSG00000118335.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	233	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCCGGGCAGTGGTGGC	NA	False	NA	NA	False	AAGAAA	-8	NA	38326711	38380271	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_38326765_38380116
ES_00029650	chr19	+	229	3	Intergenic	novelGene_2119	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGATGACAGCTGTAG	NA	False	NA	NA	False	NA	NA	NA	38337245	38338197	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_38337292_38337531_38337604_38338086
ES_00029653	chr19	+	1101	1	FSM	ENSMUSG00000098091.2	ENSMUST00000182456.2	998	1	-52	-51	-52	51	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTTGCTGAGGAGTCCCT	9746	False	NA	NA	False	NA	NA	NA	40200773	40201874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_40200800_40201900
ES_00029654	chr19	+	3843	6	NNC	ENSMUSG00000025010.15	novel	3819	6	NA	NA	-63	-6	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	8.01498596380555	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAATGGTCTTGCTGCTT	NA	False	NA	NA	False	AATAAA	-12	NA	40819659	40837010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_40819887_40820422_40820533_40825360_40825572_40833103_40833404_40833521_40833649_40834142
ES_00029655	chr19	+	6994	6	NNC	ENSMUSG00000049164.8	novel	6840	5	NA	NA	36	-26	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	49.3477456425316	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTAAACTTAAGCTTGT	NA	False	NA	15	True	AATGAA	-9	NA	40883184	40906361	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_40883235_40885527_40885610_40891282_40891503_40896502_40896648_40899476_40899554_40899941
ES_00029656	chr19	+	6859	5	NNC	ENSMUSG00000049164.8	novel	6568	3	NA	NA	473	-26	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	46.7038542306735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTAAACTTAAGCTTGT	NA	False	NA	15	True	AATGAA	-9	NA	40883621	40906361	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_40883757_40885527_40885610_40896502_40896648_40899476_40899554_40899941
ES_00029658	chr19	+	6411	9	NNC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	11	823	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_7	28.9816752448853	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATTTCCCTGCGCATC	NA	False	NA	38	True	NA	NA	NA	41471086	41575798	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41570216_41571608_41571649
ES_00029665	chr19	+	2427	1	Genic_Genomic	ENSMUSG00000018820.14	novel	NA	NA	NA	NA	6786	231	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCTGTAGACCAGGCTG	3639	False	NA	NA	False	NA	NA	NA	42180833	42183260	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_42180800_42183300
ES_00029669	chr19	+	1801	5	ISM	ENSMUSG00000025202.9	ENSMUST00000026220.7	3489	6	12194	1348	12194	650	3prime_fragment	FALSE	canonical	3	12	junction_1	133.013157243936	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTTCTTTCTGTGATC	627	False	NA	NA	False	NA	NA	NA	44203901	44231107	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_44204124_44222661_44222793_44224209_44224416_44226814_44227048_44230098
ES_00029671	chr19	+	2798	6	NNC	ENSMUSG00000035342.15	novel	3062	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	66.3487754220076	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATTTAAAAAAAAAA	868	False	NA	NA	False	NA	NA	NA	45002919	45015469	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_45002985_45003622_45003753_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ES_00029673	chr19	+	2158	14	NNC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_2	203.151006300601	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352189	45517728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_45352326_45411571_45411680_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517429
ES_00029675	chr19	+	2296	16	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	157	junction_2	153.826684580046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352189	45517728	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_45352326_45394983_45395026_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ES_00029676	chr19	+	2081	15	NNC	ENSMUSG00000025217.16	novel	2064	14	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_2	200.35734657489	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352278	45517728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_45352326_45394983_45395026_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517429
ES_00029677	chr19	+	840	6	NNC	ENSMUSG00000041035.10	novel	1353	6	NA	NA	-30	212	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_3	159.454570332744	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACTGACTGCCCCTTTC	3662	False	NA	14	True	AGTAAA	-21	NA	45549023	45566194	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_45549147_45553349_45553431_45560323_45560438_45560843_45560978_45565431_45565535_45565909
ES_00029678	chr19	+	626	2	FSM	ENSMUSG00000087367.2	ENSMUST00000133963.2	751	2	123	2	123	-2	multi-exon	FALSE	canonical	3	15	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAGTGTATCATATAGA	NA	False	NA	NA	False	AATAAA	-18	NA	45738069	45740747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_45738117_45740168
ES_00029679	chr19	+	228	2	Intergenic	novelGene_2130	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	201	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTTCTTTTAAGCAAT	NA	False	NA	NA	False	NA	NA	NA	45799039	45839271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_45799075_45839078
ES_00029680	chr19	+	203	2	Antisense	novelGene_ENSMUSG00000117972.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGTTCAATTTTTAACCT	NA	False	NA	NA	False	NA	NA	NA	45845435	45883791	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_45845465_45883617
ES_00029681	chr19	+	5161	14	NIC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	-23	-1	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	121.186784289338	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATTTTTAAGTGGTATTT	NA	False	NA	12	True	AATAAA	-14	NA	46044954	46061239	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00029682	chr19	+	5186	14	NNC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_10	135.667013166571	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCAGCGTGTCCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	46045022	46061350	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059963_46060025_46060140_46060263_46060621_46060774_46060987
ES_00029686	chr19	+	2179	3	FSM	ENSMUSG00000025224.17	ENSMUST00000236167.2	2179	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	6.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCAAATGGATCAGAGAT	9122	False	NA	NA	False	NA	NA	NA	46141018	46160955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46141232_46151958_46152065_46159095
ES_00029688	chr19	+	3153	22	FSM	ENSMUSG00000025225.16	ENSMUST00000237330.2	3846	22	0	693	0	-202	multi-exon	FALSE	canonical	3	47	junction_13	7.88983099353693	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGACAACCACCTTGGA	NA	False	NA	NA	False	NA	NA	NA	46292758	46300131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019
ES_00029690	chr19	+	1812	7	ISM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	-97	22911	11	0	5prime_fragment	FALSE	canonical	3	63	junction_6	13.5123400391395	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGACTTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	46385367	46442482	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600
ES_00029691	chr19	+	4370	13	NNC	ENSMUSG00000025231.18	novel	1747	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	3	28	junction_12	23.9890021097632	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTGAGTTGTGTGCTTC	NA	False	NA	14	True	ATTAAA	-14	NA	46385464	46477238	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293_46476755_46476774
ES_00029692	chr19	+	576	5	FSM	ENSMUSG00000025036.8	ENSMUST00000237001.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	15.5643824162734	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTGTCTGCAAACTAA	6130	False	NA	18	True	AATAAA	-18	NA	46579559	46585337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46579610_46579931_46579982_46580738_46580787_46583110_46583308_46585106
ES_00029697	chr19	+	1060	4	FSM	ENSMUSG00000006435.17	ENSMUST00000235290.2	1060	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	19.5675468285856	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGTTTGTTTTTGTT	NA	False	NA	NA	False	TATAAA	-14	NA	47167589	47229835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_47167991_47228240_47228483_47228788_47229111_47229740
ES_00029699	chr19	+	218	2	Intergenic	novelGene_2139	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTGTTATGTTT	NA	False	NA	NA	False	NA	NA	NA	51574656	51625525	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_51574691_51625341
ES_00029702	chr19	+	4431	6	FSM	ENSMUSG00000025025.15	ENSMUST00000025998.15	5036	6	267	338	29	-338	multi-exon	FALSE	canonical	3	12	junction_1	85.2478738737806	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGATTTGAGATACAGTCT	4726	False	NA	NA	False	NA	NA	NA	53318155	53363903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_53318237_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ES_00029704	chr19	+	948	2	NNC	ENSMUSG00000024983.11	novel	1599	4	NA	NA	7	-14085	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACAGTGGTTTTCTTGT	NA	False	NA	NA	False	ATTAAA	-11	NA	55304771	55306985	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_55304977_55306242
ES_00029705	chr19	+	3536	12	NIC	ENSMUSG00000024985.21	novel	3193	13	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	21	junction_6	22.2725417431976	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGGCCGCTTGCTTCTGT	NA	False	NA	22	True	AATAAA	-23	NA	55730700	55922091	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899102_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
ES_00029707	chr19	+	5515	17	NNC	ENSMUSG00000033478.6	novel	5951	17	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	26.2308710063162	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAACATTGTCGTATA	NA	False	NA	2	True	AATAAA	-13	NA	57349506	57378018	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_57349803_57356955_57357035_57359585_57359756_57361371_57361477_57361711_57361835_57366980_57367275_57367410_57367608_57369031_57369147_57369503_57369581_57369663_57369857_57370155_57370326_57370691_57370792_57371598_57371690_57372551_57372696_57373685_57373827_57374711_57374816_57374902
ES_00029716	chr19	-	728	1	FSM	ENSMUSG00000118213.2	ENSMUST00000237542.2	800	1	79	-7	79	7	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAGTTTTCTGTACAT	NA	False	NA	NA	False	NA	NA	NA	3367502	3366774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3366800_3367500
ES_00029718	chr19	-	5112	13	FSM	ENSMUSG00000024908.16	ENSMUST00000225446.2	5112	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	125.663875963708	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	3625696	3533527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576930_3594107_3594256_3625640
ES_00029719	chr19	-	5183	23	NNC	ENSMUSG00000024913.17	novel	5161	23	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_22	24.7228020691175	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTCCTTTGTGCCT	7810	False	NA	0	True	TATAAA	-20	NA	3736573	3634827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243_3709641_3736349
ES_00029720	chr19	-	202	2	Antisense	novelGene_ENSMUSG00000045098.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGAACTTGGGAAGGTGT	NA	False	NA	NA	False	NA	NA	NA	3819669	3811868	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_-_3812018_3819616
ES_00029721	chr19	-	751	1	FSM	ENSMUSG00000117779.2	ENSMUST00000236552.2	626	1	113	-238	113	238	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATCCCCACCCTCCAAA	NA	False	NA	NA	False	AATAAA	-39	NA	3872276	3871525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3871500_3872300
ES_00029722	chr19	-	1066	8	FSM	ENSMUSG00000001750.17	ENSMUST00000125792.9	1066	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	8.39582014566578	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCAGGTGCAGATCCA	NA	False	NA	NA	False	NA	NA	NA	3957040	3952493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_3952557_3952630_3952725_3952881_3952965_3953045_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ES_00029723	chr19	-	1545	11	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	39417	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	432.756513526949	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAAGAAA	6567	False	NA	NA	False	NA	NA	NA	4062665	4017966	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4017997_4057501_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ES_00029724	chr19	-	1585	11	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	39417	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	432.756513526949	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAAGAAA	6528	False	NA	NA	False	NA	NA	NA	4062704	4017966	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4017998_4057501_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ES_00029725	chr19	-	1585	11	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	39417	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	432.756513526949	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAAGAAA	6524	False	NA	NA	False	NA	NA	NA	4062708	4017966	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4017997_4057504_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ES_00029730	chr19	-	204	1	FSM	ENSMUSG00000104921.3	ENSMUST00000199928.3	216	1	26	-14	26	14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACCTGAGTGCTCTAGA	NA	False	NA	NA	False	NA	NA	NA	4128486	4128282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4128300_4128500
ES_00029731	chr19	-	700	5	FSM	ENSMUSG00000024847.16	ENSMUST00000121402.2	700	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	117.792985784384	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAAGCAAAGGCAGTAC	9626	False	NA	NA	False	NA	NA	NA	4175848	4165446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175777
ES_00029732	chr19	-	1839	14	NIC	ENSMUSG00000024830.18	novel	1979	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	79	junction_5	10.8698595277881	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2803	False	NA	-2	True	AGTAAA	-14	NA	4213299	4206793	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ES_00029733	chr19	-	1748	15	NNC	ENSMUSG00000024830.18	novel	4586	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	28.5724999799115	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2787	False	NA	-2	True	AGTAAA	-14	NA	4213315	4206793	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211062_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ES_00029736	chr19	-	2711	14	FSM	ENSMUSG00000034616.18	ENSMUST00000113852.6	2705	14	0	-6	0	6	multi-exon	TRUE	canonical	1	1	junction_12	2.03228381748045	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTTCCATTTGTGACA	2350	False	NA	-19	True	AATAAA	-20	NA	4319208	4311717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637_4315732_4315837_4316027_4316134_4316201_4316402_4316475_4316549_4316666_4317774_4318007_4318572_4318611_4319042
ES_00029739	chr19	-	1175	5	FSM	ENSMUSG00000041845.12	ENSMUST00000235680.2	1151	5	-24	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	7.56637297521078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTGTCCTGACTCTTC	9156	False	NA	-4	True	ACTAAA	-15	NA	4489452	4475694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4476285_4476607_4476790_4482082_4482193_4482795_4482884_4489247
ES_00029740	chr19	-	3034	8	FSM	ENSMUSG00000049303.11	ENSMUST00000059295.10	3581	8	300	247	9	-247	multi-exon	FALSE	canonical	1	2	junction_3	1.55182578445717	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCCAATATTCAAGAGG	NA	False	NA	NA	False	NA	NA	NA	4527175	4496182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4497889_4500956_4501091_4502304_4502426_4503792_4504009_4506522_4506916_4510644_4510839_4517934_4517992_4526962
ES_00029741	chr19	-	1458	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	0	-3	0	3	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGAACCTTGGGACTCT	NA	False	NA	-6	True	ATTAAA	-24	NA	4675669	4672615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
ES_00029742	chr19	-	1327	8	NIC	ENSMUSG00000024889.6	novel	1455	8	NA	NA	70	0	combination_of_known_junctions	TRUE	canonical	3	51	junction_4	128.932983699728	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCTTGGAACCTTGGG	NA	False	NA	-11	True	ATTAAA	-19	NA	4675547	4672620	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675121_4675220_4675324_4675460
ES_00029743	chr19	-	643	1	FSM	ENSMUSG00000071691.12	ENSMUST00000223788.2	303	1	-373	33	-158	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTCTGTATTTCAATAAA	NA	False	NA	NA	False	NA	NA	NA	4676437	4675794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4675800_4676400
ES_00029744	chr19	-	248	1	Intergenic	novelGene_2036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTACTTAGCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	4759663	4759415	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_4759400_4759700
ES_00029745	chr19	-	6337	3	ISM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	-2869	-7	-2869	7	intron_retention	FALSE	canonical	3	77	junction_2	10	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGGTGACTTCAAGT	NA	False	NA	NA	False	AATAAA	-20	NA	4846798	4834313	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_4835596_4837388_4838071_4842425
ES_00029746	chr19	-	1019	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	0	-1	0	1	multi-exon	FALSE	canonical	3	15	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTGCTTTGAGAAA	NA	False	NA	-3	True	AATAAA	-17	NA	4843879	4835179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4835596_4842425_4842849_4843699
ES_00029748	chr19	-	759	2	ISM	ENSMUSG00000094936.9	ENSMUST00000179189.9	1411	4	25	6775	16	-2014	5prime_fragment	FALSE	canonical	3	70	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGATGGTCTAGAGGGGG	NA	False	NA	NA	False	AATAAA	-15	NA	4843863	4842109	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_4842849_4843843
ES_00029750	chr19	-	2666	19	NNC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	0	38304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.388568345738	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCTTCTCAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	4978275	4918952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4918979_4957259_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ES_00029752	chr19	-	825	6	FSM	ENSMUSG00000063904.5	ENSMUST00000237930.2	825	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	70.9799971823048	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCCTATGCCGCAAAG	NA	False	NA	NA	False	NA	NA	NA	4971420	4966781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168
ES_00029753	chr19	-	3217	22	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	40988	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	500.962176257666	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGAGCCACTCATT	3918	False	NA	NA	False	TTTAAA	-42	NA	5345431	5282971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5283003_5323943_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ES_00029754	chr19	-	3166	21	NIC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_16	496.484226839081	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3919	False	NA	-25	True	AATAAA	-18	NA	5345430	5323959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ES_00029756	chr19	-	937	9	FSM	ENSMUSG00000024853.11	ENSMUST00000235182.2	933	9	0	-4	0	0	multi-exon	FALSE	canonical	3	100	junction_4	555.172045405746	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAACCGAAAGAAGAAGAAA	3918	False	NA	NA	False	NA	NA	NA	5345431	5337296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ES_00029759	chr19	-	683	3	FSM	ENSMUSG00000024914.17	ENSMUST00000124478.8	674	3	0	-9	0	9	multi-exon	FALSE	canonical	3	999	junction_1	16	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCATCCTGTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	5473951	5472823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5473054_5473358_5473448_5473587
ES_00029760	chr19	-	4139	2	FSM	ENSMUSG00000095098.3	ENSMUST00000236881.2	4165	2	0	26	0	-26	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATTAAAGGCATGTGCC	5331	False	NA	NA	False	NA	NA	NA	5507532	5503238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5507213_5507367
ES_00029761	chr19	-	4364	1	FSM	ENSMUSG00000095098.3	ENSMUST00000179549.3	4715	1	320	31	-70	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATTAAAGGCATGTGCC	5261	False	NA	NA	False	NA	NA	NA	5507602	5503238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5503200_5507600
ES_00029765	chr19	-	1730	3	FSM	ENSMUSG00000056185.6	ENSMUST00000236120.2	1724	3	0	-6	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTTGCCTTTACTTTC	NA	False	NA	0	True	AATAAA	-21	NA	5547393	5545301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5546246_5546343_5547054_5547317
ES_00029766	chr19	-	1876	12	FSM	ENSMUSG00000056185.6	ENSMUST00000237111.2	1872	12	0	-4	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.10691045284274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTTGCCTTTACTTTC	117	False	NA	0	True	AATAAA	-21	NA	5560491	5545301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5546011_5546085_5546246_5546343_5546431_5547013_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548423_5548535_5548747_5548853_5560360
ES_00029768	chr19	-	1021	1	FSM	ENSMUSG00000100937.2	ENSMUST00000189704.2	1021	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTCAGTTTATTTTTT	6793	False	NA	NA	False	ATTAAA	-18	NA	5553815	5552794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5552800_5553800
ES_00029769	chr19	-	3934	18	FSM	ENSMUSG00000056917.14	ENSMUST00000071857.13	3812	18	-116	-6	-69	0	multi-exon	FALSE	canonical	2	3	junction_16	22.9642417985895	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTATTTGTGTTTGTGTGT	8028	False	NA	-3	True	AAAAAG	-24	NA	5713804	5701215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5712615_5712870_5713631
ES_00029770	chr19	-	4071	17	NIC	ENSMUSG00000056917.14	novel	3584	17	NA	NA	-423	2	combination_of_known_junctions	FALSE	canonical	3	9	junction_16	18.506333375361	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTGTGTGTTCAAG	7674	False	NA	2	True	AAAAAG	-29	NA	5714158	5701210	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711687_5713631
ES_00029774	chr19	-	6550	35	NIC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	87	93	combination_of_known_junctions	TRUE	canonical	3	30	junction_25	22.9138600567203	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTGCTGGGCTCCAGG	NA	False	NA	91	True	NA	NA	NA	5738090	5714569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731621_5733304_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ES_00029776	chr19	-	840	9	FSM	ENSMUSG00000054874.13	ENSMUST00000137313.8	840	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	41.0790016310036	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTCCTGCTTGACTACT	2110	False	NA	NA	False	NA	NA	NA	5729605	5724950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5725083_5725387_5725533_5727152_5727196_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597
ES_00029777	chr19	-	3097	8	FSM	ENSMUSG00000054874.13	ENSMUST00000135119.2	3144	8	0	47	0	-47	multi-exon	FALSE	canonical	3	63	junction_2	16.1245154965971	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTCCAGTGGGCTTC	NA	False	NA	NA	False	NA	NA	NA	5738723	5733815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5737247_5737478_5737667_5738024
ES_00029778	chr19	-	3160	19	FSM	ENSMUSG00000024937.16	ENSMUST00000236215.2	3160	19	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_10	3.83655259347101	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCGCCTGCCCTTTCTC	NA	False	NA	NA	False	AATAAA	-16	NA	5776298	5758077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770212_5770436_5770591_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ES_00029779	chr19	-	2719	16	FSM	ENSMUSG00000024941.10	ENSMUST00000235599.2	2719	16	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_11	19.8173885486683	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCCCAGCTCAGTCCAA	9907	False	NA	-8	True	AATAAA	-16	NA	5821429	5808451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5808725_5808827_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ES_00029782	chr19	-	3004	2	FSM	ENSMUSG00000092274.4	ENSMUST00000174287.2	3004	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTTAGAATTGTCATGG	10003	False	NA	-12	True	AATAAA	-15	NA	5895504	5892334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5894787_5894952
ES_00029783	chr19	-	681	2	NNC	ENSMUSG00000024816.13	novel	4504	11	NA	NA	9234	-731	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCTAGGGGTGGAGAGT	8367	False	NA	NA	False	NA	NA	NA	5904476	5900460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5900844_5904178
ES_00029784	chr19	-	2943	11	NIC	ENSMUSG00000024816.13	novel	4504	11	NA	NA	1	-1539	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	59.3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAATGGTTATAAT	4371	False	NA	-24	True	AATAAA	-15	NA	5925266	5901268	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924837_5925118
ES_00029785	chr19	-	2927	11	NNC	ENSMUSG00000024816.13	novel	4504	11	NA	NA	0	-1539	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	59.262888893472	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAATGGTTATAAT	4370	False	NA	-24	True	AATAAA	-15	NA	5925267	5901268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923362_5924737_5924823_5925118
ES_00029787	chr19	-	618	3	FSM	ENSMUSG00000024833.16	ENSMUST00000237735.2	618	3	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_2	24	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGCGTGGCAGCGCAG	NA	False	NA	NA	False	NA	NA	NA	5992747	5990924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5991046_5992023_5992151_5992377
ES_00029791	chr19	-	679	5	FSM	ENSMUSG00000024942.20	ENSMUST00000237519.2	679	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	85.6314778571525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTAGGATCCCCAGGGC	2415	False	NA	NA	False	NA	NA	NA	6065415	6061326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065327
ES_00029794	chr19	-	465	3	FSM	ENSMUSG00000024797.15	ENSMUST00000161222.2	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTCTAGGTCCAGA	8605	False	NA	NA	False	ATTAAA	-16	NA	6119643	6118778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6118973_6119055_6119178_6119494
ES_00029795	chr19	-	675	2	FSM	ENSMUSG00000024797.15	ENSMUST00000236983.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	0	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAACCTCCTGAGCAATA	8530	False	NA	NA	False	NA	NA	NA	6119718	6118960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6118973_6119055
ES_00029798	chr19	-	438	2	FSM	ENSMUSG00000052188.7	ENSMUST00000137184.2	519	2	0	81	0	-81	multi-exon	FALSE	canonical	1	1	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGCTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	6581818	6580899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6581294_6581774
ES_00029799	chr19	-	367	4	FSM	ENSMUSG00000118668.1	ENSMUST00000239529.1	367	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	19.6015872373189	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCGCCAGTACTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	6817945	6816698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6816736_6816827_6817047_6817747_6817774_6817860
ES_00029800	chr19	-	345	2	FSM	ENSMUSG00000118668.1	ENSMUST00000239531.1	345	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGCTGGAGCTGGTTCGC	NA	False	NA	NA	False	NA	NA	NA	6817960	6816914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6817047_6817747
ES_00029801	chr19	-	755	5	FSM	ENSMUSG00000024953.18	ENSMUST00000149261.8	755	5	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	9.17537465175128	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGACCATATTTCTGCAA	NA	False	NA	-53	True	NA	NA	NA	6885669	6884117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349
ES_00029802	chr19	-	401	4	FSM	ENSMUSG00000050623.6	ENSMUST00000236981.2	897	4	496	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	4.10960933531265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGCATGGAATTTGAA	7901	False	NA	-56	True	NA	NA	NA	6902237	6899847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161
ES_00029803	chr19	-	394	3	FSM	ENSMUSG00000024958.14	ENSMUST00000237911.2	1666	3	586	686	586	256	multi-exon	FALSE	canonical	2	4	junction_2	11.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGCGCCTCTACCCTGCC	8596	False	NA	NA	False	NA	NA	NA	6916778	6916123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6916243_6916379_6916505_6916628
ES_00029804	chr19	-	921	3	FSM	ENSMUSG00000024960.10	ENSMUST00000235560.2	921	3	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_2	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTACAGCTGGAAGAGG	9459	False	NA	NA	False	NA	NA	NA	6932965	6931845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6932299_6932391_6932469_6932574
ES_00029805	chr19	-	746	6	NIC	ENSMUSG00000024963.13	novel	840	6	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	91.5654956847829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9949	False	NA	-4	True	AATAAA	-17	NA	6969936	6965278	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969916
ES_00029806	chr19	-	2587	15	FSM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	9.77945576717032	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACTGAGCTTGGGGCCA	5432	False	NA	13	True	AATAAA	-38	NA	6996837	6976325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991695_6991816_6991984_6992219_6996033_6996208_6996645
ES_00029807	chr19	-	2159	16	Fusion	ENSMUSG00000024966.10_ENSMUSG00000024965.10	novel	2108	14	NA	NA	0	-866	multi-exon	FALSE	non_canonical	0	0	junction_1	1149.3500462822	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAAAAGGAA	3763	False	NA	NA	False	NA	NA	NA	7017335	6992561	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr19_-_6992589_6994399_6994425_6998070_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ES_00029809	chr19	-	1240	1	FSM	ENSMUSG00000117901.2	ENSMUST00000236559.2	953	1	-327	40	-327	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTTGTCCTTTCTTGA	NA	False	NA	NA	False	TATAAA	-14	NA	7066113	7064873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7064900_7066100
ES_00029810	chr19	-	4007	7	FSM	ENSMUSG00000024764.11	ENSMUST00000236628.2	3993	7	0	-14	0	14	multi-exon	FALSE	canonical	3	441	junction_1	32.7078821624934	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACTGGGTGCCATGGGCA	NA	False	NA	-1	True	AATAAA	-35	NA	7218399	7203018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7212524_7218302
ES_00029813	chr19	-	249	1	Genic_Genomic	ENSMUSG00000024970.6	novel	NA	NA	NA	NA	20093	82	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATTCTCTGCATCAAGG	10000	False	NA	NA	False	TTTAAA	-21	NA	7331609	7331360	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_-_7331400_7331600
ES_00029814	chr19	-	239	2	NNC	ENSMUSG00000024970.6	novel	949	5	NA	NA	-18228	82	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATTCTCTGCATCAAGG	4459	False	NA	NA	False	TTTAAA	-21	NA	7378587	7331360	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_7331546_7378533
ES_00029815	chr19	-	2476	10	FSM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	-2	-4	-2	4	multi-exon	FALSE	canonical	2	3	junction_8	5.03322295684717	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATATGTTAGTGGTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	7584560	7574020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026_7584189_7584491
ES_00029818	chr19	-	671	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	15	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	96.6885032807245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCATGGATTTCTTGAT	5111	False	NA	-6	True	AATATA	-15	NA	8751794	8749890	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_8750199_8750391_8750471_8750868_8751057_8751698
ES_00029823	chr19	-	2694	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	3	7	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	96.3700549963525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTTAGAAATTTATTTCA	1989	False	NA	-6	True	AATAAA	-18	NA	8796593	8786431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_8788281_8788998_8789203_8793217_8793401_8795799_8796049_8796384
ES_00029824	chr19	-	422	2	Genic_Genomic	ENSMUSG00000070167.3_ENSMUSG00000093314.3	novel	148	1	NA	NA	0	23730	multi-exon	FALSE	non_canonical	0	0	junction_1	0	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTTTGTCTAGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	8866138	8842171	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_-_8842206_8865750
ES_00029825	chr19	-	1516	3	FSM	ENSMUSG00000071648.5	ENSMUST00000096242.5	1517	3	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACTGTTCTCCCGCTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	8906720	8904755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_8905252_8905341_8905589_8905947
ES_00029826	chr19	-	718	2	NNC	ENSMUSG00000071640.4	novel	758	2	NA	NA	728	8888	at_least_one_novel_splicesite	FALSE	non_canonical	1	9	junction_1	0	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATAAACTGAAGGGCT	NA	False	NA	NA	False	NA	NA	NA	9535819	9526267	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_9526323_9535156
ES_00029831	chr19	-	2178	9	FSM	ENSMUSG00000024670.18	ENSMUST00000025572.8	2173	9	0	-5	0	0	multi-exon	TRUE	canonical	1	1	junction_4	1.11102430216445	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCGTGTCTTGACAATT	8156	False	NA	NA	False	ATTAAA	-18	NA	10776108	10766704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10770191_10770309_10771505_10771602_10771927_10772069_10773689_10773753_10775679
ES_00029833	chr19	-	1133	1	FSM	ENSMUSG00000101439.2	ENSMUST00000186376.2	1480	1	-207	554	-207	-554	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTCAGCTGGAAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	11069648	11068515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_11068500_11069600
ES_00029834	chr19	-	746	1	FSM	ENSMUSG00000051548.5	ENSMUST00000054711.5	744	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	338	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTGCCCGCCCGCCTG	NA	False	NA	NA	False	NA	NA	NA	11855722	11854976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_11855000_11855700
ES_00029835	chr19	-	325	1	ISM	ENSMUSG00000057503.7	ENSMUST00000213493.2	8854	3	10198	989	7409	-989	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATAAAATGCTTAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	13116698	13116373	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_13116400_13116700
ES_00029836	chr19	-	831	1	FSM	ENSMUSG00000063586.2	ENSMUST00000072982.2	1218	1	-14	401	-14	-401	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGGCAGTAATCTTTATC	NA	False	NA	NA	False	NA	NA	NA	14938144	14937313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_14937300_14938100
ES_00029837	chr19	-	1487	1	FSM	ENSMUSG00000056829.5	ENSMUST00000072915.4	1487	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGAGACAATGGTCCCA	NA	False	NA	NA	False	NA	NA	NA	16851169	16849682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_16849700_16851200
ES_00029839	chr19	-	1700	7	FSM	ENSMUSG00000024713.17	ENSMUST00000235505.2	3334	7	0	1634	0	-1634	multi-exon	FALSE	canonical	2	3	junction_1	1.4142135623731	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCATGTTCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	17814981	17652449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_17652958_17655832_17655922_17689278_17689356_17692121_17692266_17729426_17729541_17770992_17771098_17814318
ES_00029840	chr19	-	714	4	FSM	ENSMUSG00000024725.14	ENSMUST00000138860.2	516	4	0	-198	0	198	multi-exon	FALSE	canonical	3	1094	junction_1	16.9771087709958	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGCTTTAATGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	18609082	18570766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_18571284_18573714_18573766_18581529_18581577_18608983
ES_00029841	chr19	-	1168	3	NIC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	90	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21581683	21574675	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_21575699_21576118_21576233_21581652
ES_00029843	chr19	-	2456	16	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	-17	-15603	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	103.870346533016	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTTAAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	23251278	23207701	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_23207912_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ES_00029844	chr19	-	4776	23	FSM	ENSMUSG00000024812.12	ENSMUST00000099558.5	4591	23	-157	-28	-153	10	multi-exon	FALSE	canonical	0	0	junction_22	84.2977309185516	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTATGAATGTTTTTCC	NA	False	NA	NA	False	ATTAAA	-26	NA	24202547	24071858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24202214
ES_00029846	chr19	-	1878	14	NIC	ENSMUSG00000024878.10	novel	1929	15	NA	NA	12	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	53.0831657421362	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATAGTGTGATGGTACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	24938953	24897280	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ES_00029847	chr19	-	2532	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_17	358.726852935909	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407225	27367460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27406767
ES_00029848	chr19	-	2105	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	284	junction_17	297.862756069448	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407225	27367460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404526_27407191
ES_00029851	chr19	-	7512	11	FSM	ENSMUSG00000052942.14	ENSMUST00000162022.8	7514	11	0	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_9	5.0950956811428	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGTTATTCTATTAATC	NA	False	NA	NA	False	ATTAAA	-17	NA	28657477	28236252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_28240516_28241261_28241445_28261051_28261228_28276177_28276347_28294653_28294814_28331605_28331717_28335190_28335353_28508272_28509387_28517600_28517809_28643152_28643637_28656995
ES_00029854	chr19	-	667	5	NIC	ENSMUSG00000016495.13	novel	1020	6	NA	NA	20	1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATCATGGCAGTATTCT	NA	False	NA	-104	True	AATAAA	-16	NA	29339253	29326103	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
ES_00029856	chr19	-	917	2	FSM	ENSMUSG00000074909.6	ENSMUST00000235906.2	917	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATCAAAACTTCAGGACT	NA	False	NA	NA	False	NA	NA	NA	29790354	29788322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_29789100_29790214
ES_00029857	chr19	-	3364	7	NNC	ENSMUSG00000040451.19	novel	3665	10	NA	NA	-3482	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_6	68.5362839831736	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTATTATATTGTGTT	4094	False	NA	-1	True	AATAAA	-18	NA	32219708	32100126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219503
ES_00029858	chr19	-	225	2	Intergenic	novelGene_2106	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAAATTTTCATTTGCA	NA	False	NA	NA	False	NA	NA	NA	32395130	32393815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_32393991_32395080
ES_00029859	chr19	-	208	1	Intergenic	novelGene_2107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAACTCTTTCAATCTAAC	NA	False	NA	NA	False	NA	NA	NA	32716041	32715833	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_32715800_32716000
ES_00029860	chr19	-	688	4	NNC	ENSMUSG00000087303.4	novel	2184	9	NA	NA	-10569	-3163	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	25.3683967872539	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCCAGGTAAGATCTGA	NA	False	NA	NA	False	NA	NA	NA	33739328	33726827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_33726937_33728653_33728760_33737292_33737435_33738997
ES_00029862	chr19	-	596	1	FSM	ENSMUSG00000101966.3	ENSMUST00000186108.3	716	1	283	-163	283	163	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGTGGCTTCTATAGT	NA	False	NA	NA	False	AATAAA	-23	NA	35029794	35029198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_35029200_35029800
ES_00029864	chr19	-	1985	1	FSM	ENSMUSG00002075338.1	ENSMUST00020181851.1	78	1	19	-1926	19	1926	mono-exon	FALSE	NA	NA	NA	NA	NA	530	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAGAAAAGAAAAAAAAA	1165	False	NA	NA	False	NA	NA	NA	37126543	37124558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_37124600_37126500
ES_00029865	chr19	-	406	1	FSM	ENSMUSG00000118211.2	ENSMUST00000229520.3	406	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATATTTTTGTTTTCA	NA	False	NA	NA	False	AATACA	-42	NA	37402295	37401889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_37401900_37402300
ES_00029867	chr19	-	987	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	-49	-1	-49	0	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCCTATGAGTTGAAGAC	5160	False	NA	-4	True	ATTAAA	-14	NA	38113325	38105076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
ES_00029871	chr19	-	522	1	FSM	ENSMUSG00000096592.2	ENSMUST00000120920.2	522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGGGTGCCTGATGCCA	NA	False	NA	NA	False	NA	NA	NA	40549502	40548980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_40549000_40549500
ES_00029872	chr19	-	7875	29	FSM	ENSMUSG00000025159.9	ENSMUST00000167927.8	7875	29	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_17	56.4363466614362	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTGTCCCATAACAAG	NA	False	NA	NA	False	AATAAA	-16	NA	41969553	41929524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41935543_41936128_41936186_41936654_41936756_41937893_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944036_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
ES_00029873	chr19	-	3583	27	FSM	ENSMUSG00000025159.9	ENSMUST00000170209.8	3780	27	197	0	197	0	multi-exon	FALSE	canonical	3	137	junction_15	30.7570168065799	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACACTCACGTGTACTGC	NA	False	NA	-8	True	AATAAA	-16	NA	41952869	41932643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301
ES_00029874	chr19	-	432	3	FSM	ENSMUSG00000025159.9	ENSMUST00000169779.2	432	3	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTCCTGGCCTAAACCCT	NA	False	NA	NA	False	NA	NA	NA	41934066	41932987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_41933020_41933095_41933197_41933767
ES_00029876	chr19	-	1921	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTATGAACTTTCTGGAC	4140	False	NA	3	True	AATAAA	-27	NA	42074796	42063374	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
ES_00029877	chr19	-	3738	15	FSM	ENSMUSG00000025185.15	ENSMUST00000026190.14	3738	15	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_12	2.28124563181019	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAATAGATGCTCGCA	NA	False	NA	NA	False	NA	NA	NA	42601252	42582420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42583844_42585936_42586049_42586383_42586521_42587139_42587256_42588315_42588560_42590611_42590775_42591625_42591794_42592293_42592449_42592570_42592755_42593245_42593466_42593684_42593724_42595008_42595215_42595992_42596172_42596690_42596987_42601156
ES_00029878	chr19	-	448	5	FSM	ENSMUSG00000060224.5	ENSMUST00000237747.2	1903	5	64	1391	32	-1391	multi-exon	FALSE	canonical	2	2	junction_1	2.59807621135332	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGAAGGTGAGCGGGGA	NA	False	NA	NA	False	NA	NA	NA	42740879	42730946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42731103_42735785_42735860_42735935_42736030_42737822_42737843_42740775
ES_00029879	chr19	-	1565	5	NNC	ENSMUSG00000040414.9	novel	1535	4	NA	NA	0	19829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.382535230883	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTTCATCCCCGGCT	NA	False	NA	NA	False	NA	NA	NA	43663320	43632410	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43632441_43652239_43653083_43654210_43654268_43655353_43655583_43662914
ES_00029880	chr19	-	2596	3	NIC	ENSMUSG00000040414.9	novel	3724	2	NA	NA	0	0	intron_retention	FALSE	canonical	3	293	junction_1	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACGCTGTGTTGGGTTTG	NA	False	NA	-7	True	ATTAAA	-15	NA	43663299	43652243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_43653083_43654210_43655583_43662914
ES_00029881	chr19	-	5071	16	FSM	ENSMUSG00000025195.10	ENSMUST00000212032.2	5074	16	3	0	3	0	multi-exon	FALSE	canonical	3	14	junction_13	21.6185105869947	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCACTCCATGGTCGACTG	NA	False	NA	NA	False	NA	NA	NA	43900828	43836201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43889508_43891498_43899163_43899287_43900673
ES_00029883	chr19	-	3173	11	FSM	ENSMUSG00000025198.17	ENSMUST00000170801.8	3172	11	0	-1	0	1	multi-exon	FALSE	canonical	3	157	junction_6	17.066048165876	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTGTTCTATTTTCT	NA	False	NA	-1	True	AATAAA	-20	NA	44057965	44023381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710
ES_00029884	chr19	-	2897	2	FSM	ENSMUSG00000025199.17	ENSMUST00000149091.2	642	2	-1219	-1036	-1219	-1	multi-exon	FALSE	canonical	3	313	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGAATCTCTACTCAT	4199	False	NA	-3	True	ATTAAA	-13	NA	44065562	44061775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44062980_44063869
ES_00029885	chr19	-	2817	14	NIC	ENSMUSG00000025200.8	novel	3581	14	NA	NA	7	72	combination_of_known_junctions	FALSE	canonical	3	20	junction_12	38.4159730092643	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGAGGCCAAAAGCTTT	NA	False	NA	69	True	NA	NA	NA	44124274	44097782	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120588_44121438_44121524_44124204
ES_00029886	chr19	-	687	5	FSM	ENSMUSG00000057506.6	ENSMUST00000237867.2	683	5	0	-4	0	4	multi-exon	FALSE	canonical	0	0	junction_1	551.264625656318	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGTAAGTAGCATTTT	1010	False	NA	NA	False	AATAAA	-21	NA	44134838	44130162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_44130467_44130562_44130668_44131459_44131580_44134379_44134497_44134797
ES_00029887	chr19	-	2201	7	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	38077	0	38077	0	intron_retention	FALSE	canonical	3	43	junction_4	6.39661368746516	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	3636	False	NA	-1	True	AATAAA	-17	NA	44142804	44136075	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097
ES_00029891	chr19	-	1799	6	FSM	ENSMUSG00000074818.14	ENSMUST00000038901.6	1799	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7.22218803410712	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGGTCTGACTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	45018454	45015344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45016414_45016817_45016919_45017162_45017333_45017411_45017763_45018178_45018251_45018418
ES_00029893	chr19	-	1005	8	FSM	ENSMUSG00000025221.17	ENSMUST00000086993.11	1005	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	6.66394502268034	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGAGACCACACTAGACG	NA	False	NA	NA	False	NA	NA	NA	45800730	45781787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
ES_00029894	chr19	-	519	1	FSM	ENSMUSG00000117972.2	ENSMUST00000236365.2	480	1	0	-39	0	39	mono-exon	FALSE	NA	NA	NA	NA	NA	313	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAAGTTTTTGTCCTG	NA	False	NA	NA	False	AATAAA	-19	NA	45866565	45866046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_45866000_45866600
ES_00029897	chr19	-	1110	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	365.48266750547	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46327007
ES_00029898	chr19	-	616	3	FSM	ENSMUSG00000036748.17	ENSMUST00000236066.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_2	343.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAAGGCTTGGGTAGGGC	-4	True	NA	NA	False	NA	NA	NA	46327141	46320353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46320496_46321056_46321141_46326751
ES_00029899	chr19	-	2764	12	NNC	ENSMUSG00000025228.6	novel	2757	11	NA	NA	0	20568	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.8605205674321	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAATTAGAAGAGGAAGTAA	NA	False	NA	NA	False	NA	NA	NA	46384164	46344681	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_46344713_46365251_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ES_00029901	chr19	-	3144	18	FSM	ENSMUSG00000025041.18	ENSMUST00000236501.2	3183	18	39	0	39	0	multi-exon	FALSE	canonical	3	7	junction_17	35.7064153463466	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGGTATAAGGATTTTTT	7619	False	NA	NA	False	AAAACA	-21	NA	46950320	46876108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950026
ES_00029902	chr19	-	2056	18	NIC	ENSMUSG00000025041.18	novel	7353	18	NA	NA	-50	355	combination_of_known_junctions	FALSE	canonical	1	5	junction_17	36.1371857478087	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGTATCTGTTCTCT	6908	False	NA	-16	True	TTTAAA	-24	NA	46951031	46877091	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950842
ES_00029904	chr19	-	2733	3	FSM	ENSMUSG00000071528.5	ENSMUST00000235771.2	2733	3	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_2	1312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	0	True	AATAAA	-17	NA	47079064	47071902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_47074487_47074572_47074669_47079011
ES_00029905	chr19	-	612	1	FSM	ENSMUSG00000062083.2	ENSMUST00000071866.2	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	50019174	50018562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_50018600_50019200
ES_00029906	chr19	-	713	3	ISM	ENSMUSG00000025027.19	ENSMUST00000235453.2	1679	6	3548	0	308	0	3prime_fragment	FALSE	canonical	3	1398	junction_2	80.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	NA	False	NA	-3	True	AATAAA	-14	NA	52984756	52979613	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_52980151_52983851_52983951_52984679
ES_00029907	chr19	-	4113	21	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	2	64	junction_3	339.706358492154	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	9975	False	NA	-3	True	AATAAA	-14	NA	53028686	52979613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_52980151_52983851_52983951_52984679_52984751_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
ES_00029909	chr19	-	1490	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	1.5	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGAGTTTTGTCTTTCTT	5149	False	NA	NA	False	AATAAA	-25	NA	53052940	53039150	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_-_53040340_53050500_53050648_53052786
ES_00029910	chr19	-	1992	6	FSM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	113.82794033101	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTAACAAAGGGGCGG	NA	False	NA	-2	True	AATAAA	-23	NA	53377853	53367820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53374803_53374988_53377733
ES_00029920	chr19	-	5522	16	NIC	ENSMUSG00000025085.17	novel	5927	17	NA	NA	25	1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	24.5351448606552	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGGCAGTCCTTTGAATC	NA	False	NA	-1	True	AATAAA	-24	NA	57107414	57021697	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035504_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
ES_00029933	chr19	-	1381	8	NNC	ENSMUSG00000059326.8	novel	1849	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	49.6284151654749	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9871	False	NA	-2	True	NA	NA	NA	61215121	61212839	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_61213472_61213570_61213653_61213761_61213859_61214021_61214091_61214229_61214260_61214365_61214494_61214638_61214823_61214962
ES_00029934	chr19	-	1780	11	FSM	ENSMUSG00000059326.8	ENSMUST00000237386.2	1771	11	0	-9	0	0	multi-exon	FALSE	canonical	3	34	junction_8	38.2137409841015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9806	False	NA	-2	True	NA	NA	NA	61215814	61212839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709
ES_00029939	chr19	+	204	1	Intergenic	novelGene_2023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTATTTTCTGTCCATT	NA	False	NA	NA	False	NA	NA	NA	3739042	3739246	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3739000_3739200
ES_00029940	chr19	+	208	1	Intergenic	novelGene_2030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2003	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGAACTTTCTACGTA	1909	False	NA	NA	False	NA	NA	NA	3950936	3951144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3950900_3951100
ES_00029941	chr19	+	202	1	Intergenic	novelGene_2031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGAGTGGTAGTGCAT	5266	False	NA	NA	False	NA	NA	NA	4145571	4145773	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_4145600_4145800
ES_00029942	chr19	+	207	1	Intergenic	novelGene_2035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAAAAAGTCATTGTC	NA	False	NA	NA	False	NA	NA	NA	4572732	4572939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_4572700_4572900
ES_00029945	chr19	+	269	1	Intergenic	novelGene_2048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTCTCTTGAAAGACCAAC	NA	False	NA	NA	False	NA	NA	NA	6445332	6445601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_6445300_6445600
ES_00029946	chr19	+	303	1	Intergenic	novelGene_2049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCTTTAAAAGGAGTGAG	NA	False	NA	NA	False	TTTAAA	-33	NA	6642247	6642550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_6642200_6642600
ES_00029947	chr19	+	275	1	Intergenic	novelGene_2055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCTTTCTAGACAAGGC	NA	False	NA	NA	False	NA	NA	NA	7196003	7196278	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7196000_7196300
ES_00029948	chr19	+	212	1	Intergenic	novelGene_2064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACCAAAAAGAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	8693073	8693285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_8693100_8693300
ES_00029949	chr19	+	209	1	Intergenic	novelGene_2071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGTTTTTTGTGAGCA	NA	False	NA	NA	False	NA	NA	NA	10243297	10243506	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_10243300_10243500
ES_00029950	chr19	+	235	1	Intergenic	novelGene_2074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGGACCCCTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	12525146	12525381	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_12525100_12525400
ES_00029951	chr19	+	205	1	Intergenic	novelGene_2076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAGCTATGAAGGACTA	NA	False	NA	NA	False	AAAAAG	-1	NA	14510788	14510993	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_14510800_14511000
ES_00029952	chr19	+	584	1	Intergenic	novelGene_2078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATAATTTCCCTCTTGATT	NA	False	NA	NA	False	NA	NA	NA	14769424	14770008	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_14769400_14770000
ES_00029953	chr19	+	223	1	Intergenic	novelGene_2085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTTTAAACTATACCGAT	NA	False	NA	NA	False	NA	NA	NA	20900421	20900644	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_20900400_20900600
ES_00029954	chr19	+	291	1	Intergenic	novelGene_2089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATATTCTTAAGTATT	4056	False	NA	NA	False	NA	NA	NA	23065635	23065926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_23065600_23065900
ES_00029955	chr19	+	368	1	Intergenic	novelGene_2091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACATTTTAAAAAATA	1409	False	NA	NA	False	NA	NA	NA	23089338	23089706	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_23089300_23089700
ES_00029956	chr19	+	231	1	Intergenic	novelGene_2092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTAAACTCTTAATGCC	NA	False	NA	NA	False	NA	NA	NA	23770559	23770790	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_23770600_23770800
ES_00029957	chr19	+	326	1	Intergenic	novelGene_2095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTTCAAAACAGACAGGGA	5830	False	NA	NA	False	NA	NA	NA	25010488	25010814	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_25010500_25010800
ES_00029958	chr19	+	211	1	Intergenic	novelGene_2101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATTTTTTTTTAAAAG	2299	False	NA	NA	False	NA	NA	NA	29473107	29473318	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_29473100_29473300
ES_00029959	chr19	+	204	1	Intergenic	novelGene_2103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTGTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	29654917	29655121	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_29654900_29655100
ES_00029961	chr19	+	200	1	Intergenic	novelGene_2114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37035405	37035605	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_37035400_37035600
ES_00029963	chr19	+	201	1	Intergenic	novelGene_2118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTCACCAGCCCACATAT	NA	False	NA	NA	False	NA	NA	NA	37513724	37513925	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_37513700_37513900
ES_00029964	chr19	+	212	1	Intergenic	novelGene_2122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	41464132	41464344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_41464100_41464300
ES_00029965	chr19	+	201	1	Intergenic	novelGene_2129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGCTAGTGACCCGGCA	NA	False	NA	NA	False	NA	NA	NA	44009549	44009750	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_44009500_44009800
ES_00029967	chr19	+	243	1	Intergenic	novelGene_2134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTCTTCAGTCCCACCT	3292	False	NA	NA	False	NA	NA	NA	46155836	46156079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_46155800_46156100
ES_00029968	chr19	+	203	1	Intergenic	novelGene_2136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCTTCTTGAAATAGAAC	1128	False	NA	NA	False	NA	NA	NA	46989068	46989271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_46989100_46989300
ES_00029971	chr19	+	669	6	FSM	ENSMUSG00000024829.13	ENSMUST00000139844.8	674	6	0	5	0	-5	multi-exon	FALSE	canonical	3	1812	junction_5	40.5935955539787	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTGGTATTGTGCCAGCA	7366	False	NA	NA	False	NA	NA	NA	3333054	3339174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983
ES_00029972	chr19	+	207	2	Antisense	novelGene_ENSMUSG00000024913.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTGTGGTAGCACATTC	NA	False	NA	NA	False	NA	NA	NA	3621821	3707696	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_3621873_3707540
ES_00029973	chr19	+	262	3	Antisense	novelGene_ENSMUSG00000118249.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTTCTTTTTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	3728628	3754885	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_3728757_3747196_3747299_3754853
ES_00029975	chr19	+	214	2	Antisense	novelGene_ENSMUSG00000082848.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	427	junction_1	0	40	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	3882333	3882715	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_3882412_3882579
ES_00029976	chr19	+	3556	2	FSM	ENSMUSG00000024843.16	ENSMUST00000154467.8	3605	2	0	49	0	-49	multi-exon	FALSE	canonical	3	158	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAAAGATAGAAAGA	5779	False	NA	NA	False	NA	NA	NA	3901831	3917621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3902414_3914647
ES_00029978	chr19	+	1613	5	FSM	ENSMUSG00000036908.18	ENSMUST00000161415.2	1668	5	55	0	55	0	multi-exon	FALSE	canonical	2	10	junction_1	8.46684711093805	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTGTAGGTTGTGTTCT	4151	False	NA	NA	False	AATAAA	-20	NA	3992494	3999340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
ES_00029979	chr19	+	608	3	FSM	ENSMUSG00000024871.12	ENSMUST00000235829.2	690	3	82	0	82	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAAGCTTGACTGAACA	6878	False	NA	NA	False	NA	NA	NA	4053944	4054821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4054168_4054322_4054649_4054762
ES_00029980	chr19	+	4176	24	FSM	ENSMUSG00000024851.15	ENSMUST00000049658.14	4206	24	30	0	-18	0	multi-exon	FALSE	canonical	1	1	junction_9	2.52323793539946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGGCCTTCCTGTCTGG	1337	False	NA	NA	False	AATAAA	-14	NA	4150027	4163965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4150214_4151143_4151263_4152672_4152888_4152974_4153097_4153260_4153486_4154813_4155141_4155229_4155326_4155414_4155523_4156563_4156626_4156711_4156963_4157785_4157976_4158085_4158194_4158422_4158581_4158664_4158868_4159825_4159997_4160494_4160660_4160841_4160991_4161078_4161190_4161581_4161699_4161865_4162015_4162100_4162251_4162326_4162511_4162747_4162877_4163484
ES_00029981	chr19	+	1638	3	FSM	ENSMUSG00000040663.10	ENSMUST00000046506.7	1847	3	209	0	58	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTGGACTCTTTGCCT	1984	False	NA	NA	False	AATAAA	-12	NA	4264500	4273544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4264555_4270231_4270399_4272127
ES_00029983	chr19	+	2073	5	FSM	ENSMUSG00000033760.18	ENSMUST00000236797.2	2110	5	37	0	4	0	multi-exon	FALSE	canonical	0	0	junction_3	32.5192250830182	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATCTTTTCTTAACTGAG	NA	False	NA	NA	False	AATAAA	-13	NA	4806574	4815964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_4806690_4807273_4807698_4810040_4810311_4812004_4812676_4815371
ES_00029984	chr19	+	2132	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	61	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGAGTGTTCACTTCT	4410	False	NA	21	True	ATTAAA	-22	NA	5074239	5082000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ES_00029985	chr19	+	2356	13	NNC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	33.2952907914751	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGAGTGTTCACTTCT	4410	False	NA	21	True	ATTAAA	-22	NA	5074239	5082000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_5074306_5074538_5074621_5074705_5074795_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ES_00029986	chr19	+	1646	1	NIC	ENSMUSG00000047658.7	novel	2421	3	NA	NA	7545	-1217	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGCGCGCGCGGGCCGCG	NA	False	NA	NA	False	NA	NA	NA	5355903	5357549	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_5355900_5357500
ES_00029987	chr19	+	207	1	Intergenic	novelGene_2041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGGAAGGAAGGAAGGA	1601	False	NA	NA	False	NA	NA	NA	5449496	5449703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_5449500_5449700
ES_00029988	chr19	+	1685	4	FSM	ENSMUSG00000024912.7	ENSMUST00000025850.7	1864	4	179	0	21	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGGTTGTCATGTTGGA	3122	False	NA	NA	False	AATAAA	-16	NA	5497753	5505974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5498084_5500187_5500380_5504440_5504549_5504919
ES_00029990	chr19	+	1888	11	FSM	ENSMUSG00000024909.16	ENSMUST00000235523.2	2215	11	-337	664	5	0	multi-exon	FALSE	canonical	1	3	junction_1	23.8706933288499	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524005	5531881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5524424_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ES_00029991	chr19	+	1841	5	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	0	41596	intron_retention	TRUE	non_canonical	0	0	junction_4	2714.10412244998	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGACCTTCGGAAGAGC	NA	False	NA	NA	False	NA	NA	NA	5540543	5586825	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5544661_5586708
ES_00029993	chr19	+	3092	2	FSM	ENSMUSG00000049562.7	ENSMUST00000096318.4	3092	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTCCTGGCCTGTTTTC	8015	False	NA	NA	False	NA	NA	NA	5618101	5621289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5618636_5618731
ES_00029994	chr19	+	704	3	FSM	ENSMUSG00000024940.12	ENSMUST00000237327.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCTGCGTGGGTGAGCAA	3229	False	NA	NA	False	NA	NA	NA	5806997	5807858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5807501_5807574_5807656_5807738
ES_00029995	chr19	+	475	2	FSM	ENSMUSG00000043488.6	ENSMUST00000187697.2	516	2	41	0	41	0	multi-exon	FALSE	canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACCTGTGCACACGCAT	NA	False	NA	NA	False	ATTAAA	-34	NA	5895691	5901416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_5895779_5901028
ES_00029996	chr19	+	1259	2	NNC	ENSMUSG00000110156.3	novel	647	2	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACACTACACAGCGGC	9365	False	NA	4	True	NA	NA	NA	5962990	5964858	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_5963101_5963709
ES_00029999	chr19	+	1590	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-52	14	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTAAGCCTTTTGTCTCT	7986	False	NA	24	True	AATAAA	-40	NA	6234365	6274269	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
ES_00030000	chr19	+	5540	36	ISM	ENSMUSG00000024769.8	ENSMUST00000025681.8	5995	37	2706	-1	2706	1	3prime_fragment	FALSE	canonical	1	1	junction_13	7.00180734685331	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTCCCTGCCTAGGTCT	NA	False	NA	9	True	AATAAA	-19	NA	6359191	6375683	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_6359248_6359328_6359413_6359756_6359853_6360247_6360397_6360824_6360919_6361051_6361253_6361351_6361601_6362147_6362228_6363248_6363347_6363444_6363526_6363718_6363826_6363920_6364101_6364314_6364396_6364525_6364648_6364734_6364811_6365019_6365127_6365201_6365317_6365668_6365818_6365893_6365983_6366228_6366282_6366370_6366470_6366548_6366609_6366858_6366965_6367190_6367325_6367404_6367545_6367633_6367716_6368387_6368605_6370108_6370172_6370272_6370873_6371686_6371785_6371856_6371942_6372056_6372178_6372283_6372402_6372584_6372709_6372822_6372912_6374546
ES_00030002	chr19	+	2875	31	FSM	ENSMUSG00000024948.16	ENSMUST00000123468.9	2875	31	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	5.4793551932078	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACTAGTCTCTCTGAG	1481	False	NA	10	True	ATTAAA	-14	NA	6391279	6403898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6391376_6391488_6391547_6391773_6391998_6392284_6392341_6392639_6392688_6392773_6392817_6393133_6393207_6393284_6393417_6393490_6393554_6393831_6393914_6394001_6394110_6394436_6394516_6394619_6394679_6395348_6395393_6395473_6395513_6395606_6395641_6395757_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
ES_00030003	chr19	+	532	3	FSM	ENSMUSG00000032648.15	ENSMUST00000139775.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	2.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACCCACTTTGGAACCCA	NA	False	NA	NA	False	NA	NA	NA	6447524	6448321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6447743_6447895_6447963_6448074
ES_00030005	chr19	+	2219	17	FSM	ENSMUSG00000032946.17	ENSMUST00000035716.15	2219	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	88.109218445064	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCTAAAACCCTCTGAT	NA	False	NA	25	True	AATAAA	-27	NA	6450591	6465246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6450682_6451745_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ES_00030006	chr19	+	1109	1	FSM	ENSMUSG00000024959.15	ENSMUST00000237244.2	1107	1	-2	0	-2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGAAGTCTTTCGAGGC	728	False	NA	NA	False	NA	NA	NA	6927840	6928949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6927800_6928900
ES_00030008	chr19	+	686	3	FSM	ENSMUSG00000056612.8	ENSMUST00000237084.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	1484	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTTATATTGACTC	1853	False	NA	NA	False	ATTAAA	-14	NA	6952608	6954618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_6952875_6953911_6953996_6954282
ES_00030010	chr19	+	315	1	Intergenic	novelGene_2054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAACACTGTCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	7190064	7190379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7190100_7190400
ES_00030011	chr19	+	377	1	Intergenic	novelGene_2057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACCAGCCCCTCAAATA	NA	False	NA	NA	False	NA	NA	NA	7196639	7197016	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7196600_7197000
ES_00030012	chr19	+	505	1	Intergenic	novelGene_2058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCTCCCTGAGCACTGG	NA	False	NA	NA	False	NA	NA	NA	7197379	7197884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7197400_7197900
ES_00030014	chr19	+	904	1	Intergenic	novelGene_2061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CGAAAAACCAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	7374806	7375710	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_7374800_7375700
ES_00030016	chr19	+	348	1	FSM	ENSMUSG00000024761.4	ENSMUST00000025669.4	504	1	137	19	137	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAGCCAGAGAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	7645788	7646136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_7645800_7646100
ES_00030017	chr19	+	1759	1	FSM	ENSMUSG00000117877.2	ENSMUST00000235438.2	2194	1	1050	-615	1050	615	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATCTCCTTTCCTGCCTG	NA	False	NA	NA	False	AATAAA	-37	NA	8250925	8252684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8250900_8252700
ES_00030019	chr19	+	463	1	FSM	ENSMUSG00000090840.3	ENSMUST00000187020.2	463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGGCCTAGGCTTCCAG	5898	False	NA	NA	False	AATAAA	-27	NA	8718125	8718588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8718100_8718600
ES_00030020	chr19	+	1799	11	FSM	ENSMUSG00000010110.18	ENSMUST00000010254.16	1780	11	-19	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	60.8157874239905	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6606	False	NA	12	True	NA	NA	NA	8718833	8733006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732240
ES_00030021	chr19	+	2106	10	FSM	ENSMUSG00000010110.18	ENSMUST00000176013.8	2106	10	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	59.188545772111	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	7024	False	NA	12	True	NA	NA	NA	8719251	8733006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720867_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ES_00030024	chr19	+	1919	2	NNC	ENSMUSG00000071661.8	novel	2004	2	NA	NA	-59	10	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGTTGGCTGGTTTCTT	5369	False	NA	22	True	CATAAA	-27	NA	8779859	8782220	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_8779896_8780337
ES_00030026	chr19	+	2640	1	Genic_Genomic	ENSMUSG00000100141.2	novel	NA	NA	NA	NA	-298	1069	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAGGCCTATGA	NA	False	NA	NA	False	NA	NA	NA	9584169	9586809	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_9584200_9586800
ES_00030027	chr19	+	3389	13	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	0	5773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	224.133702656844	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCCTGTCAATTGTTCT	NA	False	NA	NA	False	NA	NA	NA	10160348	10180014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234_10174239_10179988
ES_00030028	chr19	+	3786	11	NIC	ENSMUSG00000034820.5	novel	3315	11	NA	NA	0	82	combination_of_known_junctions	FALSE	canonical	3	42	junction_3	81.7863069223693	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCATTGAATAGATTTG	NA	False	NA	18	True	AATAAA	-23	NA	10502629	10525099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509699_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ES_00030029	chr19	+	2155	7	FSM	ENSMUSG00000034445.9	ENSMUST00000237641.2	2149	7	-6	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	40.1939741199543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAGGTCTCTTTTGTTCA	NA	False	NA	12	True	ATTAAA	-15	NA	10554811	10567191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10566492
ES_00030031	chr19	+	2602	5	NIC	ENSMUSG00000048832.10	novel	2690	5	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	46.3923485070545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTCTGTGGTGTCCATG	NA	False	NA	11	True	AATAAA	-14	NA	10666110	10691985	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_10666261_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ES_00030033	chr19	+	269	2	Antisense	novelGene_ENSMUSG00000118027.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCATGTTTTAATGTGGT	NA	False	NA	NA	False	NA	NA	NA	10779626	10821666	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_+_10779754_10821524
ES_00030034	chr19	+	1197	1	FSM	ENSMUSG00000099998.2	ENSMUST00000187178.2	916	1	-281	0	-281	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTTGTCTGGAATAAC	NA	False	NA	NA	False	AAAACA	-24	NA	11098592	11099789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_11098600_11099800
ES_00030035	chr19	+	802	4	NIC	ENSMUSG00000024639.6	novel	5644	7	NA	NA	-196	-85	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	13.735598518691	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATACACCAGCCAATATGA	NA	False	NA	NA	False	NA	NA	NA	16110463	16294553	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_16110826_16196951_16197137_16293380_16293536_16294453
ES_00030036	chr19	+	2747	7	FSM	ENSMUSG00000024697.5	ENSMUST00000025602.4	3290	7	352	191	352	-191	multi-exon	FALSE	canonical	1	2	junction_2	2.3392781412697	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTAACAGATGTCATGTA	NA	False	NA	NA	False	NA	NA	NA	16413477	16587993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_16414182_16511076_16511262_16576303_16576459_16580627_16580757_16582326_16582457_16585346_16585501_16586703
ES_00030037	chr19	+	1138	8	ISM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	23	13096	14	-1643	5prime_fragment	FALSE	canonical	3	57	junction_3	14.2427926635594	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGCTATTCTTTCAGA	NA	False	NA	10	True	AATAAA	-22	NA	17114152	17185852	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594
ES_00030038	chr19	+	3993	9	NIC	ENSMUSG00000039126.11	novel	2115	11	NA	NA	21	-2	combination_of_known_splicesites	FALSE	canonical	2	2	junction_7	39.0174239923653	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATTGTGGTTTCCTCTTT	NA	False	NA	0	True	AATAAA	-12	NA	17114159	17201294	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_17114256_17145626_17145707_17156153_17156355_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17193689_17193738_17198147
ES_00030039	chr19	+	1317	7	NNC	ENSMUSG00000024750.12	novel	7385	6	NA	NA	-402	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	136.840539802112	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCAGAGTTTTGCTT	NA	False	NA	NA	False	ATTAAA	-29	NA	21249239	21258028	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_21249332_21249625_21250107_21253789_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
ES_00030040	chr19	+	593	1	FSM	ENSMUSG00000117944.2	ENSMUST00000237913.2	382	1	-34	-177	-34	177	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACAAATATGACTCATAGA	NA	False	NA	NA	False	NA	NA	NA	23583227	23583820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_23583200_23583800
ES_00030041	chr19	+	633	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAAGTTCGTGCTTTCTG	NA	False	NA	NA	False	AAAAAG	-26	NA	23653211	23653844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_23653200_23653800
ES_00030042	chr19	+	1926	1	FSM	ENSMUSG00000082107.2	ENSMUST00000118970.2	1111	1	-728	-87	-728	87	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTTTTAAATACACTCC	NA	False	NA	NA	False	NA	NA	NA	24266351	24268277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_24266400_24268300
ES_00030043	chr19	+	511	4	FSM	ENSMUSG00000052085.8	ENSMUST00000235722.2	2158	4	0	1647	0	-1545	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTATCCCCTCTTTA	NA	False	NA	NA	False	NA	NA	NA	24976907	25042823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_24977068_25028850_25028954_25038471_25038648_25042751
ES_00030044	chr19	+	217	1	Intergenic	novelGene_2098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAAGTAATTTGAGGCC	5601	False	NA	NA	False	NA	NA	NA	25188004	25188221	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_25188000_25188200
ES_00030045	chr19	+	4768	8	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-232	-650	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	15.6739742690791	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTGTGTATATATAT	NA	False	NA	NA	False	NA	NA	NA	25214106	25402698	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501
ES_00030046	chr19	+	5494	13	NIC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	25.6525935444266	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214353	25411860	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_25214682_25252111_25252199_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ES_00030047	chr19	+	5347	14	NNC	ENSMUSG00000032702.17	novel	583	3	NA	NA	523	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	21.8263724091838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214861	25411860	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_25214915_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ES_00030049	chr19	+	6086	33	NIC	ENSMUSG00000024921.18	novel	5913	33	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_10	6.89535339467819	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCGCCTTTTCTTTTA	NA	False	NA	63	True	AATAAA	-18	NA	26584596	26755721	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_26584944_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ES_00030050	chr19	+	466	4	FSM	ENSMUSG00000024921.18	ENSMUST00000176019.2	661	4	0	195	0	-195	multi-exon	FALSE	canonical	2	15	junction_1	3.68178700572909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGAGCATTGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	26648497	26655782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_26648585_26650098_26650247_26654033_26654198_26655715
ES_00030051	chr19	+	723	5	FSM	ENSMUSG00000024921.18	ENSMUST00000176700.8	867	5	0	144	0	-144	multi-exon	FALSE	canonical	3	26	junction_1	4.38035386698381	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTCAAGTTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	26693514	26749009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907
ES_00030052	chr19	+	670	1	FSM	ENSMUSG00000024780.8	ENSMUST00000225598.2	557	1	548	-661	209	601	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCCAAGATTTTAAGACCA	NA	False	NA	NA	False	AATAGA	-24	NA	28989517	28990187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_28989500_28990200
ES_00030053	chr19	+	618	2	FSM	ENSMUSG00000118038.2	ENSMUST00000235636.2	618	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	29044746	29046903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_29044983_29046521
ES_00030054	chr19	+	2667	8	FSM	ENSMUSG00000038658.16	ENSMUST00000161330.2	2667	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	10.7494660522355	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAAGCAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	29575244	29583296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_29575306_29575389_29575527_29577231_29577519_29578217_29578410_29579672_29579851_29579991_29580181_29581260_29581633_29582045
ES_00030055	chr19	+	568	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5983	20	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	19.7709101684492	150	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTCTGGGCAGTAAT	NA	False	NA	24	True	AATAAA	-15	NA	29681316	29685846	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_29681401_29682019_29682117_29684207_29684322_29685573
ES_00030056	chr19	+	383	1	FSM	ENSMUSG00000058607.5	ENSMUST00000080982.5	378	1	-5	0	-5	0	mono-exon	FALSE	NA	NA	NA	NA	NA	458	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGATCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	30138014	30138397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_30138000_30138400
ES_00030057	chr19	+	1481	6	FSM	ENSMUSG00000024776.19	ENSMUST00000125232.2	4234	6	2753	0	2563	0	multi-exon	FALSE	canonical	3	52	junction_5	5.03587132480567	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATACAATTAATAAAAACA	4304	False	NA	NA	False	NA	NA	NA	34197586	34213262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609
ES_00030058	chr19	+	263	3	FSM	ENSMUSG00000024778.14	ENSMUST00000112472.4	532	3	41	228	41	-228	multi-exon	FALSE	canonical	1	1	junction_2	2.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAAGGGGGTGGGGTGGG	NA	False	NA	NA	False	AAAAAG	-11	NA	34268122	34286522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_34268145_34284524_34284679_34286435
ES_00030060	chr19	+	6430	9	FSM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	7	6	7	-6	multi-exon	FALSE	canonical	3	10	junction_1	36.9382931386928	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTGTTGGCCTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	36325715	36438364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_36325970_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ES_00030061	chr19	+	1733	10	NNC	ENSMUSG00000024805.17	novel	430	5	NA	NA	294	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	40.2780459761186	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387441	36433592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_36387711_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
ES_00030062	chr19	+	6291	26	NIC	ENSMUSG00000024811.12	novel	6481	27	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	243	junction_17	153.021912156397	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTCTTGATTGTGCCT	NA	False	NA	16	True	AATAAA	-22	NA	36811632	36870877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
ES_00030067	chr19	+	1501	1	FSM	ENSMUSG00000117988.2	ENSMUST00000237246.2	946	1	-32	-523	-32	523	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTTTCTGTAATTTAAAT	432	False	NA	NA	False	AATAGA	-35	NA	37376822	37378323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_37376800_37378300
ES_00030068	chr19	+	5022	8	ISM	ENSMUSG00000024989.16	ENSMUST00000096096.12	2366	9	51	0	2	0	3prime_fragment	FALSE	canonical	3	299	junction_1	30.684703361906	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043538	38062869	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_+_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ES_00030069	chr19	+	1507	2	FSM	ENSMUSG00000044026.4	ENSMUST00000236865.2	1610	2	0	103	0	-103	multi-exon	FALSE	canonical	3	381	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTGTGTTCTCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	38384488	38390127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_38384750_38388881
ES_00030070	chr19	+	366	2	FSM	ENSMUSG00000048120.17	ENSMUST00000160286.2	380	2	-7	21	-7	-21	multi-exon	FALSE	canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAAGCTTGCTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	40600825	40604141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_40600968_40603917
ES_00030071	chr19	+	1853	2	Genic_Genomic	ENSMUSG00000044065.4	novel	906	1	NA	NA	-5440	793	multi-exon	FALSE	canonical	2	2	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAGTAACTGTAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	41442811	41449950	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_+_41442955_41448240
ES_00030072	chr19	+	2396	1	FSM	ENSMUSG00000044065.4	ENSMUST00000057038.4	906	1	-24	-1466	-24	1466	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGAAGTTGTTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	41448227	41450623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_41448200_41450600
ES_00030074	chr19	+	1864	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	4175	False	NA	9	True	AATAAA	-15	NA	41921964	41932534	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ES_00030075	chr19	+	393	3	FSM	ENSMUSG00000025176.15	ENSMUST00000167381.2	567	3	115	59	115	-59	multi-exon	FALSE	canonical	2	2	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACCAAGGTAGGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	42034404	42048724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_42034550_42048326_42048456_42048605
ES_00030076	chr19	+	5608	13	FSM	ENSMUSG00000018820.14	ENSMUST00000169536.8	5611	13	3	0	3	0	multi-exon	FALSE	canonical	2	5	junction_9	59.023300483792	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGGCTGACTTCAGTTTC	NA	False	NA	NA	False	ATTAAA	-11	NA	42159008	42183029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174058_42174080_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ES_00030077	chr19	+	6816	20	NNC	ENSMUSG00000036097.9	novel	6249	20	NA	NA	13	487	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_19	47.5808103966877	40	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGCAACTTTTGAT	1068	False	NA	7	True	ATTAAA	-20	NA	44919614	44972225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_44919890_44922550_44922595_44923371_44924106_44926803_44926859_44929897_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44969000
ES_00030081	chr19	+	5082	14	NNC	ENSMUSG00000055491.15	novel	5205	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_2	157.352805267157	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTTTAAGTGGTATTTG	NA	False	NA	13	True	AATAAA	-15	NA	46045022	46061240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059963_46060025_46060140_46060263_46060621_46060774_46060987
ES_00030082	chr19	+	5076	14	NNC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_10	119.48246386645	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTTTAAGTGGTATTTG	NA	False	NA	13	True	AATAAA	-15	NA	46045031	46061240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059963_46060025_46060140_46060263_46060621_46060774_46060987
ES_00030083	chr19	+	3166	7	NIC	ENSMUSG00000055491.15	novel	5205	14	NA	NA	-1344	0	intron_retention	FALSE	canonical	3	433	junction_1	46.196741106802	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCAGCGTGTCCTTTC	NA	False	NA	3	True	AATAAA	-15	NA	46054928	46061348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ES_00030084	chr19	+	2933	13	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	8	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	332.5726633217	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGTACCTGCATGGTTG	12	False	NA	NA	False	NA	NA	NA	46064435	46073385	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_+_46064589_46067141_46067198_46067296_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ES_00030086	chr19	+	1246	5	FSM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	-5	2	-2	-2	multi-exon	FALSE	canonical	0	0	junction_1	11.8004237212059	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCGTGGTGCATAGGG	6311	False	NA	6	True	AATAAA	-15	NA	46316620	46318882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_+_46316741_46316841_46316966_46317113_46317268_46317526_46318033_46318540
ES_00030101	chr19	-	202	1	Intergenic	novelGene_2025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGAACTTGGGAAGGTGT	NA	False	NA	NA	False	NA	NA	NA	3812070	3811868	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_3811900_3812100
ES_00030102	chr19	-	803	8	NNC	ENSMUSG00000059734.8	novel	780	7	NA	NA	0	7921	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	682.782303131377	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGTTCAAGGTTCAGTG	NA	False	NA	NA	False	NA	NA	NA	3962768	3950941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_3950967_3958862_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
ES_00030103	chr19	-	1957	10	NNC	ENSMUSG00000024885.10	novel	1924	10	NA	NA	-1053	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	2.58198889747161	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3980861	3963490	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3980715
ES_00030104	chr19	-	1545	11	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	39419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	432.756513526949	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAGAAAAAGAAAAA	6571	False	NA	NA	False	NA	NA	NA	4062661	4017964	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4017997_4057499_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ES_00030106	chr19	-	849	8	NNC	ENSMUSG00000060803.7	novel	821	7	NA	NA	0	17042	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1275.00980388388	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAGAAAAAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	4087977	4068364	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4068404_4085409_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ES_00030107	chr19	-	788	8	Fusion	ENSMUSG00000038155.12_ENSMUSG00000060803.7	novel	821	7	NA	NA	0	17042	multi-exon	FALSE	non_canonical	0	0	junction_1	1360.59355294905	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAGAAAAAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	4092218	4068364	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr19_-_4068404_4085409_4085662_4085823_4085932_4086687_4086792_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ES_00030108	chr19	-	692	6	FSM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	1	-8	1	7	multi-exon	FALSE	canonical	3	12	junction_5	23.4469614236046	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCTTGTCCTTAATCCT	9225	False	NA	NA	False	NA	NA	NA	4109294	4107469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258
ES_00030109	chr19	-	374	2	FSM	ENSMUSG00000024847.16	ENSMUST00000136043.2	674	2	24	276	24	-276	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACATGCCGAGCTCGACGC	9708	False	NA	NA	False	NA	NA	NA	4175766	4171208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4171546_4175729
ES_00030110	chr19	-	2090	14	FSM	ENSMUSG00000024830.18	ENSMUST00000154307.8	2090	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	26.2800124287345	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2787	False	NA	-2	True	AGTAAA	-14	NA	4213315	4206793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208363_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ES_00030111	chr19	-	224	1	ISM	ENSMUSG00000117905.2	ENSMUST00000235329.2	3709	16	21844	238	21844	-238	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTCGTTTTATAGACCA	NA	False	NA	NA	False	NA	NA	NA	4219202	4218978	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_4219000_4219200
ES_00030112	chr19	-	1755	10	FSM	ENSMUSG00000040247.7	ENSMUST00000235450.2	1996	10	229	12	-8	8	multi-exon	FALSE	canonical	0	0	junction_2	0.785674201318386	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACTCTCCACCCTGGCC	NA	False	NA	NA	False	AATAAA	-43	NA	4241054	4234367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4235073_4235350_4235506_4237940_4238131_4238244_4238311_4238942_4239058_4239211_4239319_4239404_4239513_4239862_4239963_4240662_4240835_4241017
ES_00030113	chr19	-	336	2	FSM	ENSMUSG00000117718.2	ENSMUST00000236420.2	460	2	122	2	122	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGCTTGTACAGTGTG	NA	False	NA	NA	False	NA	NA	NA	4307557	4304060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4304204_4307364
ES_00030114	chr19	-	917	7	FSM	ENSMUSG00000005986.17	ENSMUST00000169653.2	1217	7	0	300	0	-300	multi-exon	FALSE	canonical	1	1	junction_1	5.39804491356722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCATAATTATATGAGGG	858	False	NA	NA	False	NA	NA	NA	4333165	4329793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4329813_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332071_4332196_4332333_4332908
ES_00030115	chr19	-	261	3	FSM	ENSMUSG00000024858.15	ENSMUST00000168594.8	261	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	5.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGCCCTGAGCCTGA	NA	False	NA	NA	False	NA	NA	NA	4339422	4338423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4338536_4338619_4338687_4339340
ES_00030116	chr19	-	7235	22	NNC	ENSMUSG00000054611.18	novel	7242	21	NA	NA	-318	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_21	35.1498896047914	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAGACTTTAAAAA	NA	False	NA	7	True	NA	NA	NA	4448631	4366197	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4446338_4446429_4447961
ES_00030121	chr19	-	2693	19	NNC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	14	38304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.388568345738	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCTTCTCAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	4978301	4918952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_4918978_4957257_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ES_00030122	chr19	-	1145	9	FSM	ENSMUSG00000006464.10	ENSMUST00000235498.2	1244	9	6	93	6	-93	multi-exon	FALSE	canonical	2	10	junction_2	3.11247489949718	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACTTGCACTGTAGACC	5089	False	NA	NA	False	NA	NA	NA	4956640	4948922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
ES_00030123	chr19	-	4089	7	FSM	ENSMUSG00000024901.16	ENSMUST00000025834.15	4110	7	21	0	-8	0	multi-exon	FALSE	canonical	1	2	junction_1	5.01386965216377	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCTGGTAAAGGACTTCA	8727	False	NA	NA	False	NA	NA	NA	4993134	4979744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_4982896_4984394_4984584_4984930_4985126_4986145_4986248_4988076_4988207_4991787_4991941_4992965
ES_00030124	chr19	-	627	3	NIC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-644	26	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCCAGGCCACTCAGCC	NA	False	NA	-6	True	AATAAA	-34	NA	5122804	5120860	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5121140_5121682_5121923_5122696
ES_00030126	chr19	-	3252	22	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	40987	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	500.962176257666	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGCCAGAGCCACTCAT	3866	False	NA	NA	False	TTTAAA	-41	NA	5345483	5282972	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5283003_5323959_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ES_00030127	chr19	-	494	5	FSM	ENSMUSG00000039148.6	ENSMUST00000236511.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	66.2962102989304	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCAGATGTAGTGTTAAA	NA	False	NA	-50	True	AATGAA	-16	NA	5431348	5430128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237
ES_00030128	chr19	-	1972	16	FSM	ENSMUSG00000024906.11	ENSMUST00000025841.4	1954	16	0	-18	0	0	multi-exon	TRUE	canonical	1	1	junction_2	26.5385254551441	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAATGCCAAGGTCCT	NA	False	NA	-6	True	AATAAA	-31	NA	5538313	5532867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5533058_5533135_5533250_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
ES_00030130	chr19	-	2072	13	NIC	ENSMUSG00000024926.11	novel	2154	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	11	junction_10	120.917556854063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3648	False	NA	-3	True	AATAAA	-18	NA	5660057	5653041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5659013_5659263_5659401_5659490_5659560_5659879
ES_00030132	chr19	-	6899	35	NNC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	118	-1	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_25	27.1164348331834	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCAGTTTTATTTTCT	NA	False	NA	-3	True	NA	NA	NA	5738605	5714663	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733334_5733441_5733815_5733907_5734317_5734494_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ES_00030133	chr19	-	7043	35	NNC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_28	24.0650071156035	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTGGCAGTTTTATTTT	NA	False	NA	-5	True	NA	NA	NA	5738721	5714665	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733304_5733441_5733815_5733907_5734317_5734494_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ES_00030134	chr19	-	709	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	0	-4	0	0	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTCTTTCTTGGTTCT	NA	False	NA	3	True	AAAACA	-17	NA	5781760	5780330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
ES_00030135	chr19	-	374	1	Intergenic	novelGene_2047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	8367	False	NA	NA	False	NA	NA	NA	5904476	5904102	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_5904100_5904500
ES_00030136	chr19	-	742	5	FSM	ENSMUSG00000024833.16	ENSMUST00000236013.2	656	5	-86	0	-86	0	multi-exon	FALSE	canonical	2	5	junction_4	175.421456783371	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCATCCTGGTAGGTCCCC	NA	False	NA	NA	False	NA	NA	NA	6002298	5998439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6001933
ES_00030137	chr19	-	1891	10	FSM	ENSMUSG00000037451.9	ENSMUST00000041827.8	1897	10	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_6	2.68512132746546	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGAGATGCTGGGTCTT	8730	False	NA	NA	False	AATAAA	-19	NA	6036165	6020261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6020582_6021426_6021634_6021746_6021856_6022883_6023099_6030387_6030504_6031657_6031782_6032860_6033030_6034825_6034981_6035607_6035712_6035793
ES_00030138	chr19	-	902	6	NNC	ENSMUSG00000024944.7	novel	1286	5	NA	NA	0	93560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	290.357297135788	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCCCTTTTCTCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	6191170	6090843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_6090871_6184415_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
ES_00030141	chr19	-	1252	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6693	False	NA	NA	False	AATAAA	-18	NA	6134720	6130791	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
ES_00030143	chr19	-	2309	4	FSM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	0	-4	0	4	multi-exon	FALSE	canonical	3	648	junction_1	55.8091987638836	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAGTCACTGACTTTA	NA	False	NA	5	True	AATAAA	-31	NA	6191170	6184399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6184832_6186008_6187671_6187759_6187871_6191066
ES_00030144	chr19	-	360	2	FSM	ENSMUSG00000024777.11	ENSMUST00000153155.2	389	2	29	0	29	0	multi-exon	FALSE	canonical	3	118	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACACTGTGCTGCCTGCGG	NA	False	NA	NA	False	NA	NA	NA	6280480	6279314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_6279380_6280185
ES_00030146	chr19	-	4087	31	NIC	ENSMUSG00000024960.10	novel	4257	31	NA	NA	58	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_30	127.230940506711	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGTGTACAGTGTAGTT	NA	False	NA	-9	True	AATAAA	-15	NA	6951661	6931081	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6951562
ES_00030148	chr19	-	861	7	NNC	ENSMUSG00000024963.13	novel	840	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_3	78.2788817838715	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9948	False	NA	-4	True	AATAAA	-17	NA	6969937	6965278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526_6969641_6969916
ES_00030150	chr19	-	406	3	NNC	ENSMUSG00000024965.10	novel	2856	14	NA	NA	19389	-344	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCACCTCCAGGGACCCC	8128	False	NA	NA	False	NA	NA	NA	6977324	6976690	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_6976889_6977006_6977149_6977258
ES_00030151	chr19	-	1445	11	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	5298	365	5174	-344	3prime_fragment	FALSE	canonical	3	13	junction_3	4.73392015141785	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCACCTCCAGGGACCCC	7896	False	NA	NA	False	NA	NA	NA	6991539	6976690	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427
ES_00030152	chr19	-	203	1	Intergenic	novelGene_2052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTCTTTAATCATATT	9386	False	NA	NA	False	NA	NA	NA	6978306	6978103	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_6978100_6978300
ES_00030153	chr19	-	431	1	FSM	ENSMUSG00000117901.2	ENSMUST00000236559.2	953	1	499	23	499	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	439	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAATAAATAGAAAGATTT	NA	False	NA	NA	False	TATAAA	-31	NA	7065287	7064856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7064900_7065300
ES_00030154	chr19	-	3227	1	FSM	ENSMUSG00000024764.11	ENSMUST00000235323.2	4520	1	2400	-1107	2380	1107	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAACCCTGTCTCAAAA	1573	False	NA	NA	False	NA	NA	NA	7216019	7212792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7212800_7216000
ES_00030155	chr19	-	4545	17	NIC	ENSMUSG00000024969.16	novel	2874	18	NA	NA	13	0	intron_retention	FALSE	canonical	0	0	junction_2	112.194568022476	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGCCTACTGTTCCTT	3934	False	NA	-1	True	AATAAA	-20	NA	7319151	7252760	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_7254816_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ES_00030157	chr19	-	1490	3	ISM	ENSMUSG00000024972.17	ENSMUST00000079902.6	2590	8	6377	198	6377	-198	3prime_fragment	FALSE	canonical	2	5	junction_2	2	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAGCCCGGAACTCTAG	5243	False	NA	NA	False	AAAAAG	-27	NA	7578091	7574276	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_7575537_7576124_7576276_7578012
ES_00030158	chr19	-	320	1	FSM	ENSMUSG00000118220.2	ENSMUST00000236907.2	1365	1	298	747	298	-747	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGGTTCAAGGGATGG	NA	False	NA	NA	False	NA	NA	NA	7938174	7937854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_7937900_7938200
ES_00030159	chr19	-	286	2	Intergenic	novelGene_2063	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCCGCCCCCCACATCT	NA	False	NA	NA	False	NA	NA	NA	8671587	8665584	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_8665679_8671395
ES_00030160	chr19	-	2188	13	NIC	ENSMUSG00000003680.17	novel	2065	12	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_11	69.7284415110187	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9973	False	NA	-3	True	AATAAA	-14	NA	8763608	8751855	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8762996_8763192_8763573
ES_00030163	chr19	-	5589	26	FSM	ENSMUSG00000036098.16	ENSMUST00000189897.2	3339	26	-136	-2114	5	1	multi-exon	FALSE	canonical	2	5	junction_20	4.43693587963585	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTCTGACATCTTCTT	7150	False	NA	1	True	NA	NA	NA	10218104	10185634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192470_10193105_10193175_10193424_10193514_10193783_10193857_10193981_10194143_10194783_10194894_10195511_10195624_10195827_10196029_10196401_10196493_10196885_10196997_10197158_10197236_10198541_10198738_10200480_10200605_10200680_10200932_10201735_10202016_10202812_10202875_10206016_10206281_10206383_10206472_10217922
ES_00030164	chr19	-	2073	1	FSM	ENSMUSG00000090291.4	ENSMUST00000171400.4	2103	1	11	19	11	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCTTGGAGAAAGAAT	NA	False	NA	NA	False	CATAAA	-3	NA	10434826	10432753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_10432800_10434800
ES_00030166	chr19	-	864	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTGGTTGATTTTCTC	NA	False	NA	-5	True	AATAAA	-15	NA	10533089	10527826	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ES_00030167	chr19	-	1280	8	ISM	ENSMUSG00000024738.7	ENSMUST00000025647.7	1417	9	1272	-1	18	1	3prime_fragment	FALSE	canonical	3	9	junction_1	1.72614942479922	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACTAACGTCTGCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	10654163	10646318	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_10646626_10646718_10646818_10646891_10647037_10649151_10649269_10651001_10651202_10652190_10652310_10652407_10652526_10653988
ES_00030168	chr19	-	3475	11	NNC	ENSMUSG00000024736.16	novel	3657	11	NA	NA	12	5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	20.7161772535379	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTACTGCTGTGACACT	NA	False	NA	-6	True	AATAAA	-20	NA	10847130	10835192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_10836516_10836927_10837120_10837487_10837758_10838893_10839097_10840586_10840731_10840828_10841028_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ES_00030169	chr19	-	1309	1	FSM	ENSMUSG00000101439.2	ENSMUST00000186376.2	1480	1	-115	286	-115	-286	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAAATAACCTTGCACA	NA	False	NA	NA	False	AAAAAG	-42	NA	11069556	11068247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_11068200_11069600
ES_00030171	chr19	-	332	1	ISM	ENSMUSG00000067529.3	ENSMUST00000214472.2	5570	4	7508	1691	2931	-1691	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTCAGTGATTAAGATCC	NA	False	NA	NA	False	TATAAA	-33	NA	12011173	12010841	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_12010800_12011200
ES_00030172	chr19	-	526	2	FSM	ENSMUSG00000086213.3	ENSMUST00000136697.2	1106	2	584	-4	537	4	multi-exon	FALSE	canonical	1	2	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	893	False	NA	NA	False	NA	NA	NA	12573346	12563227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_12563709_12573301
ES_00030173	chr19	-	4397	1	Genic_Genomic	ENSMUSG00000057503.7	novel	NA	NA	NA	NA	4442	116	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATGACATGGATTTGAG	NA	False	NA	NA	False	NA	NA	NA	13119665	13115268	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr19_-_13115300_13119700
ES_00030174	chr19	-	459	1	ISM	ENSMUSG00000057503.7	ENSMUST00000213493.2	8854	3	5716	5337	2927	2284	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAAACAGTTTCAAGGGC	NA	False	NA	NA	False	NA	NA	NA	13121180	13120721	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_13120700_13121200
ES_00030175	chr19	-	1272	1	FSM	ENSMUSG00000063586.2	ENSMUST00000072982.2	1218	1	-14	-40	-14	40	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGATGGGGTTAAGGAAC	NA	False	NA	NA	False	GGGGCT	-35	NA	14938144	14936872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_14936900_14938100
ES_00030176	chr19	-	2367	14	NIC	ENSMUSG00000041491.9	novel	2548	15	NA	NA	-5	-1	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	44.4826939288933	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTATATTGAGTGATAAAA	186	False	NA	NA	False	AATAAA	-15	NA	15962342	15933138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_15933768_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ES_00030177	chr19	-	12361	69	NIC	ENSMUSG00000046230.12	novel	2939	22	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_1	10.4210140870299	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTGGATTTTTTTTT	NA	False	NA	1	True	AATAAA	-15	NA	16758291	16609919	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_16612958_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872_16642269_16643517_16643801_16645961_16646066_16653409_16653571_16655217_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ES_00030178	chr19	-	296	1	Intergenic	novelGene_2081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATTATGTACTTAACTA	NA	False	NA	NA	False	NA	NA	NA	16647641	16647345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_16647300_16647600
ES_00030180	chr19	-	431	1	FSM	ENSMUSG00000056829.5	ENSMUST00000072915.4	1487	1	1080	-24	1080	24	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGGTGCTCCAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	16850089	16849658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_16849700_16850100
ES_00030181	chr19	-	2038	13	FSM	ENSMUSG00000024747.4	ENSMUST00000025656.4	2066	13	24	4	24	-4	multi-exon	FALSE	canonical	0	0	junction_1	0.276385399196283	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGTTCAGTTTGAAT	NA	False	NA	NA	False	AATAAA	-13	NA	20704902	20670320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_20670900_20673699_20673775_20677261_20677420_20679574_20679740_20685513_20685699_20686761_20686865_20692044_20692159_20693284_20693414_20695059_20695122_20696549_20696680_20699641_20699783_20704321_20704427_20704810
ES_00030182	chr19	-	605	4	Intergenic	novelGene_2093	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_2	6.12825877028341	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACACTGGCAACTTAAC	NA	False	NA	NA	False	TATAAA	-14	NA	23934126	23884633	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_23885008_23885116_23885214_23932923_23932974_23934042
ES_00030183	chr19	-	4585	23	FSM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	83	0	83	0	multi-exon	FALSE	canonical	1	2	junction_22	83.9099280958925	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAAATGTGTGTATGA	NA	False	NA	NA	False	ATTAAA	-16	NA	24151470	24071868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24151318
ES_00030184	chr19	-	1072	5	FSM	ENSMUSG00000059363.11	ENSMUST00000123684.2	1072	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	173.887894920837	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAAGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	24257932	24238864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_24239418_24244665_24244764_24249667_24249832_24254544_24254640_24257770
ES_00030185	chr19	-	3548	1	FSM	ENSMUSG00000074922.2	ENSMUST00000099556.2	855	1	-109	-2584	-109	2584	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATACTTAAGTACTGTC	NA	False	NA	NA	False	TATAAA	-8	NA	24454829	24451281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_24451300_24454800
ES_00030186	chr19	-	502	1	FSM	ENSMUSG00000098105.2	ENSMUST00000182565.2	998	1	334	162	334	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGTGACTTCAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	25773837	25773335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_25773300_25773800
ES_00030187	chr19	-	3843	1	FSM	ENSMUSG00000041360.9	ENSMUST00000236705.2	3843	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGTAA	8117	False	NA	NA	False	TTTAAA	-16	NA	27390972	27387129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_27387100_27391000
ES_00030188	chr19	-	625	6	FSM	ENSMUSG00000041360.9	ENSMUST00000235631.2	3056	6	0	2431	0	-2431	multi-exon	FALSE	canonical	3	1425	junction_4	101.990979993331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGCGTTGGTCAGTT	206	False	NA	NA	False	NA	NA	NA	27398883	27389560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696
ES_00030190	chr19	-	705	2	FSM	ENSMUSG00000050957.5	ENSMUST00000052380.5	708	2	3	0	3	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGCTTATATGTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	29302753	29298743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_29299140_29302444
ES_00030191	chr19	-	8391	7	FSM	ENSMUSG00000046138.16	ENSMUST00000177155.8	6632	7	-587	-1172	-587	-1	multi-exon	FALSE	canonical	1	2	junction_6	8.20568908339411	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCATGATTTCATTACT	3333	False	NA	-1	True	AATAAA	-22	NA	29783976	29691802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_29697007_29697985_29698174_29700789_29700906_29712515_29712606_29720932_29721013_29730999_29732418_29782681
ES_00030192	chr19	-	1366	5	FSM	ENSMUSG00000071573.15	ENSMUST00000163093.2	1378	5	0	12	0	-12	multi-exon	FALSE	canonical	0	0	junction_4	8.20060973342836	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTTACTACCAAATGTCG	NA	False	NA	NA	False	AATAAA	-3	NA	33369695	33115158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33369354
ES_00030193	chr19	-	684	3	FSM	ENSMUSG00000087303.4	ENSMUST00000235430.2	923	3	0	239	0	-239	multi-exon	FALSE	canonical	2	5	junction_1	0.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAGTAGATTGGTATAT	NA	False	NA	NA	False	NA	NA	NA	33726858	33723903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_33724349_33725834_33726034_33726818
ES_00030194	chr19	-	233	2	NNC	ENSMUSG00000024766.16	novel	2768	11	NA	NA	263	-204470	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGAAATGGATTTTCTCT	NA	False	NA	NA	False	AAAAAG	-5	NA	33739088	33737292	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_33737435_33738997
ES_00030196	chr19	-	222	1	Intergenic	novelGene_2113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATATACTCTTAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	36898751	36898529	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_-_36898500_36898800
ES_00030198	chr19	-	5841	10	NIC	ENSMUSG00000039652.17	novel	3148	11	NA	NA	-83	-4	combination_of_known_junctions	TRUE	canonical	1	1	junction_7	3.12694383988229	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAACGTGCGAGATCTCA	9291	False	NA	-10	True	AATAAA	-13	NA	37184775	36998700	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_37002488_37021921_37022104_37031659_37031775_37045572_37045692_37064937_37065028_37065819_37065988_37103731_37103789_37116461_37116622_37151366_37152386_37184631
ES_00030200	chr19	-	1884	1	FSM	ENSMUSG00000054237.7	ENSMUST00000238154.2	1884	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTTGTATTTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	38212586	38210702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_38210700_38212600
ES_00030201	chr19	-	594	1	FSM	ENSMUSG00000105709.2	ENSMUST00000199966.2	1044	1	-172	622	-157	-622	mono-exon	FALSE	NA	NA	NA	NA	NA	504	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGAGTCGGGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	38303875	38303281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_38303300_38303900
ES_00030202	chr19	-	1336	1	FSM	ENSMUSG00000117935.2	ENSMUST00000237606.2	814	1	-51	-471	-51	471	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGATGATGCTAGTGTG	NA	False	NA	NA	False	AATAAA	-21	NA	38692819	38691483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_38691500_38692800
ES_00030203	chr19	-	213	2	Antisense	novelGene_ENSMUSG00000048720.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	456	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAATAATTAAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	38834261	38829674	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr19_-_38829843_38834216
ES_00030204	chr19	-	5645	24	NIC	ENSMUSG00000025006.19	novel	3589	29	NA	NA	0	2713	intron_retention	FALSE	canonical	3	22	junction_3	18.4479034520711	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTCTCTTCCTTC	9888	False	NA	-1	True	AATAAA	-23	NA	40502195	40280483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40365088_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ES_00030205	chr19	-	5494	25	NIC	ENSMUSG00000025006.19	novel	4313	27	NA	NA	0	2706	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	23.0361657086321	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGCACCTCTGTGTTCTC	9888	False	NA	-8	True	AATAAA	-16	NA	40502195	40280490	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40310236_40310405_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ES_00030210	chr19	-	3471	30	NIC	ENSMUSG00000025159.9	novel	3412	30	NA	NA	0	78	combination_of_known_junctions	FALSE	canonical	2	4	junction_29	52.4045363876748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAGGCACAGAGAAGCTA	NA	False	NA	70	True	NA	NA	NA	41969553	41932565	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41969437
ES_00030211	chr19	-	836	5	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	133776	497	-10053	0	3prime_fragment	FALSE	canonical	3	50	junction_1	10.2347447452294	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	-17	True	AATAAA	-17	NA	42286446	42271970	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092
ES_00030212	chr19	-	2608	16	FSM	ENSMUSG00000025188.16	ENSMUST00000162061.2	2608	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.7108544675922	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGCTTCTGACAGAGTG	791	False	NA	NA	False	AAGAAA	-17	NA	42766702	42746918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_42747747_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560
ES_00030214	chr19	-	2972	10	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	0	20131	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.118675694562	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGTGCAAACTTGAG	NA	False	NA	NA	False	NA	NA	NA	43741439	43701561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43701587_43723543_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ES_00030215	chr19	-	849	3	NNC	ENSMUSG00000025197.10	novel	1916	9	NA	NA	21628	1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_2	7	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTATGTTTGACTT	9579	False	NA	NA	False	AATAAA	-19	NA	43996010	43993459	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr19_-_43994062_43995462_43995605_43995905
ES_00030218	chr19	-	2755	11	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35342	0	intron_retention	FALSE	canonical	3	31	junction_8	12.458330546265	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	901	False	NA	-1	True	AATAAA	-17	NA	44145539	44136075	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
ES_00030219	chr19	-	3950	17	ISM	ENSMUSG00000051984.14	ENSMUST00000063632.14	3939	26	13974	-1045	-11297	1045	3prime_fragment	FALSE	canonical	2	8	junction_8	5.1234753829798	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTCTCCTCTGCATCCT	NA	False	NA	1	True	AATAAA	-21	NA	44520329	44504350	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119
ES_00030224	chr19	-	2008	8	NIC	ENSMUSG00000025221.17	novel	1005	8	NA	NA	35	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	7.23934826246853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGTCTCTGCCTCTTTA	NA	False	NA	-1	True	AATAAA	-20	NA	45785448	45780785	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45785353
ES_00030227	chr19	-	2792	10	NIC	ENSMUSG00000025223.16	novel	3133	11	NA	NA	7	0	intron_retention	FALSE	canonical	3	657	junction_1	53.8023359904074	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTCATGTTCCCCTAT	6729	False	NA	-31	True	ATTAAA	-20	NA	46033642	46021032	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ES_00030229	chr19	-	1178	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	0	-11	0	7	multi-exon	FALSE	canonical	3	29	junction_9	358.309542707226	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCATTTCTGCCCC	5874	False	NA	5	True	AGTAAA	-26	NA	46327047	46318971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46327007
ES_00030240	chr19	-	1841	7	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	2	-6	intron_retention	FALSE	canonical	3	31	junction_5	103.870779764517	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGATACCTGGGAAGTC	9795	False	NA	NA	False	AATGAA	-19	NA	60215107	60187023	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
ES_00030241	chr19	-	1342	6	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	2	-3	intron_retention	FALSE	canonical	2	2	junction_5	112.055343469198	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAAGCAGTTGATTTAT	9795	False	NA	NA	False	NA	NA	NA	60215107	60187349	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60214663
ES_00030242	chr19	-	1128	13	NIC	ENSMUSG00000063698.10	novel	1309	14	NA	NA	40	-1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_11	6.73094016876956	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTGAAAGAAATCATCAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	60849822	60827196	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60848466_60848533_60849736
ES_00030244	chr19	-	4823	3	FSM	ENSMUSG00000074733.15	ENSMUST00000143264.8	4825	3	0	2	0	-2	multi-exon	FALSE	canonical	3	41	junction_2	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAAAAACCAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	61129228	61110895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr19_-_61115506_61115875_61116003_61129142
ES_00030248	chr19	+	238	1	Intergenic	novelGene_2022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCAGATGCTCTTACCCA	NA	False	NA	NA	False	NA	NA	NA	3638506	3638744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3638500_3638700
ES_00030249	chr19	+	245	1	Intergenic	novelGene_2027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATCAGATGCATTGTG	NA	False	NA	NA	False	NA	NA	NA	3879016	3879261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_3879000_3879300
ES_00030250	chr19	+	237	1	Intergenic	novelGene_2032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTGGTTTTTCGAGATA	1766	False	NA	NA	False	NA	NA	NA	4297392	4297629	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_4297400_4297600
ES_00030251	chr19	+	221	1	Intergenic	novelGene_2034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGCTGAGACAAGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	4395861	4396082	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_4395900_4396100
ES_00030252	chr19	+	761	1	Intergenic	novelGene_2065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAAATTCTAAAGCTGA	9293	False	NA	NA	False	NA	NA	NA	8783783	8784544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_8783800_8784500
ES_00030254	chr19	+	202	1	Intergenic	novelGene_2084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	823	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTATCTTAAATCTTAAAC	NA	False	NA	NA	False	NA	NA	NA	19114940	19115142	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_19114900_19115100
ES_00030255	chr19	+	201	1	Intergenic	novelGene_2090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTCACCAGCCCCCAAAG	4130	False	NA	NA	False	NA	NA	NA	23065709	23065910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_23065700_23065900
ES_00030256	chr19	+	390	1	Intergenic	novelGene_2099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCACCAAAAGCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	28750452	28750842	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_28750500_28750800
ES_00030257	chr19	+	272	1	Intergenic	novelGene_2108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGGTCATGTACAGGATT	9102	False	NA	NA	False	NA	NA	NA	32997053	32997325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_32997100_32997300
ES_00030259	chr19	+	297	1	Intergenic	novelGene_2127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTGACATCTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	42688937	42689234	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr19_+_42688900_42689200
ES_00030263	chr1_GL456212v1_random	+	215	2	Intergenic	novelGene_2144	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATCTATAAAACAGAAATGC	NA	False	NA	NA	False	NA	NA	NA	23452	29276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_GL456212v1_random_+_23506_29114
ES_00030264	chr1_MU069434v1_random	-	2297	2	Intergenic	novelGene_2145	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	56	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	3601	0	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_MU069434v1_random_-_2217_3520
ES_00030265	chr1_MU069434v1_random	-	1494	3	Intergenic	novelGene_2146	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	40	junction_1	27	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATATTCCATGGATTGA	NA	False	NA	NA	False	AATGAA	-7	NA	7750	4051	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr1_MU069434v1_random_-_5277_7393_7461_7548
ES_00030266	chr2	+	4215	8	FSM	ENSMUSG00000050530.15	ENSMUST00000115099.9	4149	8	-66	0	-66	0	multi-exon	TRUE	canonical	3	29	junction_6	7.31785627135183	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTTTATTCTGATTCA	820	False	NA	NA	False	AATAAA	-20	NA	3119352	3228843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3119690_3179272_3179501_3187459_3187553_3198313_3198473_3203581_3203759_3221289_3221407_3224506_3224622_3225854
ES_00030267	chr2	+	4461	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGAGTGTTTTCTGTAC	987	False	NA	21	True	AATAAA	-21	NA	3285248	3329914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ES_00030269	chr2	+	537	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1035	False	NA	NA	False	AATAAA	-16	NA	3337201	3342030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
ES_00030270	chr2	+	539	4	FSM	ENSMUSG00000026644.8	ENSMUST00000115089.2	531	4	-3	-5	-3	5	multi-exon	FALSE	canonical	2	5	junction_2	7.54247233265651	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGTATGGATATTTA	1035	False	NA	NA	False	AATAAA	-21	NA	3337201	3342035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3337259_3341369_3341488_3341591_3341655_3341734
ES_00030273	chr2	+	3637	14	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	0	1261	intron_retention	FALSE	canonical	1	1	junction_5	8.54365746271681	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACTTGAGTATGATGACA	1073	False	NA	10	True	AATAAA	-21	NA	3425238	3456390	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438066_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ES_00030274	chr2	+	328	1	FSM	ENSMUSG00000082580.4	ENSMUST00000122241.2	312	1	-16	0	-16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAAAGGAGAGCGGTCCA	1034	False	NA	NA	False	NA	NA	NA	3551777	3552105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3551800_3552100
ES_00030275	chr2	+	440	1	FSM	ENSMUSG00000081070.2	ENSMUST00000120117.2	1069	1	648	-19	648	19	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATCTGATCCTTGCTGC	1707	False	NA	NA	False	AAGAAA	-38	NA	3688046	3688486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3688000_3688500
ES_00030276	chr2	+	3153	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	3	0	3	0	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTTTGTCTCGTTTGT	947	False	NA	19	True	AATAAA	-25	NA	3714497	3783179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
ES_00030277	chr2	+	5867	12	FSM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	-52	-1460	-50	1	multi-exon	FALSE	canonical	3	30	junction_5	12.5901706380102	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTTGCCTCTTGGACAC	4381	False	NA	NA	False	ATTAAA	-22	NA	4564514	4618855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4565102_4570862_4571002_4577108_4577251_4591171_4591306_4595430_4595554_4599349_4599579_4602148_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
ES_00030278	chr2	+	417	1	FSM	ENSMUSG00000083378.4	ENSMUST00000118297.2	379	1	50	-88	50	88	mono-exon	FALSE	NA	NA	NA	NA	NA	529	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAAGAAAACTCTA	4872	False	NA	NA	False	CATAAA	-32	NA	4705098	4705515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4705100_4705500
ES_00030279	chr2	+	2257	9	FSM	ENSMUSG00000048186.15	ENSMUST00000184139.8	2251	9	-6	0	-6	0	multi-exon	FALSE	canonical	2	4	junction_5	3.45506874027131	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAATAATAATAACT	4437	False	NA	NA	False	AATAAA	-31	NA	4722635	4805374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530_4757803_4767888_4768115_4793266_4793387_4801343_4801395_4804764
ES_00030280	chr2	+	2302	9	FSM	ENSMUSG00000048186.15	ENSMUST00000056914.7	2302	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.45506874027131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGAAAAAAAATGTGAC	4757	False	NA	NA	False	NA	NA	NA	4722955	4805736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530_4757803_4767888_4768115_4793266_4793387_4801340_4801395_4804764
ES_00030281	chr2	+	2857	5	FSM	ENSMUSG00000048186.15	ENSMUST00000138322.2	2860	5	3	0	3	0	multi-exon	FALSE	canonical	1	2	junction_1	3.67423461417477	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACATGAGTCTTGCTTGC	NA	False	NA	4	True	AATAAA	-15	NA	4757530	4806953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4757803_4767892_4768115_4793266_4793387_4801340_4801395_4804764
ES_00030282	chr2	+	409	2	Antisense	novelGene_ENSMUSG00000083407.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTTTCTCTATGT	NA	False	NA	NA	False	NA	NA	NA	4837624	4899457	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_4837885_4899308
ES_00030283	chr2	+	5319	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATGTCTCTGTTTACT	4092	False	NA	NA	False	AATAAA	-17	NA	4886374	4915368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ES_00030284	chr2	+	4144	9	FSM	ENSMUSG00000026662.14	ENSMUST00000115019.2	2933	9	-848	-363	-167	363	multi-exon	FALSE	canonical	3	45	junction_1	174.928378200908	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGGACTTGCTTCTA	3925	False	NA	23	True	AATAAA	-32	NA	4886207	4913311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4887387_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ES_00030286	chr2	+	1460	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	-22	0	-22	0	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	969	False	NA	9	True	AATAAA	-20	NA	4923807	4943541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
ES_00030287	chr2	+	244	1	FSM	ENSMUSG00000086670.2	ENSMUST00000142299.2	311	1	-163	230	-163	-230	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGCAAGGATTCTCTGTA	NA	False	NA	NA	False	AAGAAA	-40	NA	4946821	4947065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4946800_4947100
ES_00030288	chr2	+	201	2	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	966	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCCCCTTTAAAACTGA	5875	False	NA	NA	False	NA	NA	NA	4982055	4996825	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_4982111_4996679
ES_00030289	chr2	+	1209	2	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	137	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATCTTTTTAAAAAAAAG	1116	False	NA	NA	False	NA	NA	NA	4995587	5016179	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_4996680_5016062
ES_00030290	chr2	+	2670	3	FSM	ENSMUSG00000026676.8	ENSMUST00000027988.8	2670	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	4	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTGTCTTTGGATCG	4727	False	NA	NA	False	AATAAA	-42	NA	5142586	5235689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_5143119_5146041_5146217_5233726
ES_00030292	chr2	+	1438	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	3	9	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_8	312.824409391453	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGGGTTTTTTTGTTGT	1939	False	NA	NA	False	NA	NA	NA	5850066	5873556	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ES_00030293	chr2	+	3446	9	NIC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	-1075	combination_of_known_splicesites	FALSE	canonical	3	49	junction_7	223.812107302085	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTGGTGTCAAATGAAG	1936	False	NA	8	True	AATAAA	-15	NA	5850063	5875631	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ES_00030294	chr2	+	4948	10	FSM	ENSMUSG00000025817.13	ENSMUST00000026927.10	4764	10	0	-184	0	184	multi-exon	FALSE	canonical	3	595	junction_8	64.0216012928353	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAGCACAGTTTTGCAA	1702	False	NA	NA	False	NA	NA	NA	5849829	5876890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871053_5871164_5871219_5872899
ES_00030295	chr2	+	5225	22	NIC	ENSMUSG00000043241.15	novel	5174	22	NA	NA	-54	0	combination_of_known_junctions	TRUE	canonical	3	51	junction_18	43.3799853532905	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTGTTTTATTTGGT	1624	False	NA	17	True	AATAAA	-21	NA	5956225	6061514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051711_6051877_6055148_6055291_6056319_6056441_6060243
ES_00030296	chr2	+	5420	23	NNC	ENSMUSG00000043241.15	novel	5174	22	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	62.7902187466164	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTGTTTTATTTGGT	1626	False	NA	17	True	AATAAA	-21	NA	5956227	6061514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_5956365_5957238_5957433_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
ES_00030297	chr2	+	5174	22	FSM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_5	24.2975694686972	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTGTTTTATTTGGT	1678	False	NA	17	True	AATAAA	-21	NA	5956279	6061514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
ES_00030298	chr2	+	7499	15	FSM	ENSMUSG00000039046.16	ENSMUST00000114937.8	7484	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	91	junction_4	18.797660514445	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGATGCAGCCTTGACTTA	4639	False	NA	10	True	ATTAAA	-20	NA	6327462	6451201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_6327766_6341178_6341271_6395865_6395934_6399283_6399367_6405090_6405131_6413739_6413821_6419743_6419852_6425713_6425824_6428232_6428282_6429082_6429204_6431705_6431801_6432362_6432429_6432522_6432623_6435236_6435390_6445171
ES_00030299	chr2	+	682	7	FSM	ENSMUSG00000039046.16	ENSMUST00000132391.2	682	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	38.2695120893324	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAGAGTTTGATATTA	4759	False	NA	NA	False	NA	NA	NA	6327582	6425823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_6327766_6341178_6341271_6395865_6395934_6405090_6405131_6413739_6413821_6419743_6419852_6425713
ES_00030300	chr2	+	263	3	FSM	ENSMUSG00000039046.16	ENSMUST00000150515.2	704	3	0	441	0	-441	multi-exon	FALSE	canonical	3	147	junction_2	7	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGCCCTGCATGTGAC	NA	False	NA	NA	False	NA	NA	NA	6425732	6429205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_6425824_6428232_6428282_6429082
ES_00030301	chr2	+	380	1	FSM	ENSMUSG00000103570.2	ENSMUST00000194765.2	1682	1	400	902	400	-902	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGGGCGAGGCAGTACGA	NA	False	NA	NA	False	NA	NA	NA	10053048	10053428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_10053000_10053400
ES_00030302	chr2	+	1371	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	0	101	0	-101	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATTTTATCTTTGTTCC	4825	False	NA	NA	False	AATAAA	-28	NA	10085434	10097516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
ES_00030303	chr2	+	7843	24	NIC	ENSMUSG00000061186.16	novel	1813	7	NA	NA	-54	0	combination_of_known_junctions	TRUE	canonical	2	9	junction_1	13.9709393226675	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	2709	False	NA	-9	True	AATAAA	-4	NA	10375266	10600052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_10375364_10376219_10376271_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ES_00030306	chr2	+	8036	23	FSM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	-174	12	-160	0	multi-exon	FALSE	canonical	3	38	junction_1	8.61768314629387	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	4529	False	NA	-9	True	AATAAA	-4	NA	10377086	10600052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ES_00030309	chr2	+	264	2	Antisense	novelGene_ENSMUSG00000082424.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACAAAGCTGTCATTAAA	NA	False	NA	NA	False	NA	NA	NA	11413658	11421989	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_11413871_11421937
ES_00030310	chr2	+	1618	7	FSM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	18.7742435858871	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4768	False	NA	33	True	AATAAA	-35	NA	11783301	11795136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_11783714_11784487_11784709_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
ES_00030311	chr2	+	1244	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	-12	0	-12	0	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGATGCTCCTTAGAGG	4700	False	NA	NA	False	NA	NA	NA	12928839	13005791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
ES_00030312	chr2	+	2095	1	FSM	ENSMUSG00000086358.3	ENSMUST00000193685.2	2782	1	880	-193	880	193	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACTACTATGTCCAGGAA	5688	False	NA	NA	False	NA	NA	NA	13277292	13279387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_13277300_13279400
ES_00030315	chr2	+	3981	13	FSM	ENSMUSG00000026718.18	ENSMUST00000028050.14	3981	13	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_8	25.5357864356845	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGTCTCTGTAATACCCT	4773	False	NA	NA	False	AATATA	-21	NA	14078999	14149176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512
ES_00030318	chr2	+	2396	1	FSM	ENSMUSG00000103475.2	ENSMUST00000195680.2	1844	1	83	-635	83	635	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGTGCATAATTTATTT	8680	False	NA	NA	False	NA	NA	NA	14350570	14352966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_14350600_14353000
ES_00030320	chr2	+	6978	6	FSM	ENSMUSG00000017418.15	ENSMUST00000069870.11	6981	6	3	0	3	0	multi-exon	FALSE	canonical	3	92	junction_3	13.7346277707115	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTAGCCTGTGTTTTCTTT	4661	False	NA	16	True	AATAAA	-18	NA	15060053	15087267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_15060386_15072949_15073011_15074630_15074779_15077934_15078019_15079772_15079925_15081066
ES_00030321	chr2	+	520	1	FSM	ENSMUSG00000081389.3	ENSMUST00000122443.3	430	1	6	-96	6	96	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTTGTTTGTTTT	NA	False	NA	NA	False	AAGAAA	-15	NA	15486728	15487248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_15486700_15487200
ES_00030322	chr2	+	7111	14	FSM	ENSMUSG00000026748.14	ENSMUST00000028081.13	6947	14	3	-167	3	167	multi-exon	FALSE	canonical	3	34	junction_8	9.12179261942059	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	102	False	NA	NA	False	NA	NA	NA	16361117	16760817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708195_16716892_16717041_16718480_16718520_16734063_16734225_16756001
ES_00030323	chr2	+	1282	1	Intergenic	novelGene_2159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGGGAGGAAGGGTGTA	NA	False	NA	NA	False	NA	NA	NA	17940946	17942228	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_17940900_17942200
ES_00030326	chr2	+	5065	22	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-109	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	60.4211973436093	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	4533	False	NA	11	True	AATAAA	-15	NA	18069337	18217198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069676_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00030329	chr2	+	5063	24	FSM	ENSMUSG00000026743.17	ENSMUST00000114671.8	5063	24	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	74.1776083487481	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4642	False	NA	12	True	AATAAA	-16	NA	18069446	18217199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00030331	chr2	+	8452	23	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	-3224	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	47.2740384433549	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	1176	False	NA	12	True	AATAAA	-16	NA	18065980	18217199	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00030334	chr2	+	720	4	NIC	ENSMUSG00000026743.17	novel	651	6	NA	NA	3	17586	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	71.2242156073964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTACTGGCTTACGT	4696	False	NA	NA	False	AATACA	-17	NA	18069500	18087652	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18087321
ES_00030335	chr2	+	4924	22	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_12	65.9975605953368	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	4696	False	NA	11	True	AATAAA	-15	NA	18069500	18217198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00030342	chr2	+	1245	1	FSM	ENSMUSG00000060795.6	ENSMUST00000122008.2	522	1	3	-726	3	726	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTGCAACCTAGCAGGG	NA	False	NA	NA	False	AAAAAG	-29	NA	19997734	19998979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_19997700_19999000
ES_00030343	chr2	+	5655	18	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9529	0	-215	0	3prime_fragment	FALSE	canonical	3	69	junction_16	36.8251268212062	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4581	False	NA	22	True	AATAAA	-14	NA	20524386	20815335	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
ES_00030344	chr2	+	7302	20	NIC	ENSMUSG00000036617.18	novel	7197	21	NA	NA	-185	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_16	40.2682831275283	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4611	False	NA	22	True	AATAAA	-14	NA	20524416	20815335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812185_20812712_20812836_20813520
ES_00030346	chr2	+	7197	21	FSM	ENSMUSG00000036617.18	ENSMUST00000066509.10	7197	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	63.9268918374732	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTCCTGCCTGACTC	4833	False	NA	34	True	AATAAA	-26	NA	20524638	20815347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20764357_20764463_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812185_20812712_20812836_20813520
ES_00030347	chr2	+	781	5	NNC	ENSMUSG00000036617.18	novel	1391	6	NA	NA	11	5919	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	78.1568934899539	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTTGGTTGTGATGTCT	4844	False	NA	NA	False	NA	NA	NA	20524649	20673046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_20524739_20534769_20535054_20653783_20653834_20666708_20666908_20672887
ES_00030362	chr2	+	3631	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114529.10	3630	13	-1	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	26.0302975182553	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAGAAATCGACAGCT	NA	False	NA	NA	False	ATTAAA	-11	NA	22959078	23004427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
ES_00030363	chr2	+	736	1	FSM	ENSMUSG00000026781.18	ENSMUST00000226938.2	1438	1	844	-142	-74	139	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGTGGATGGCCCT	NA	False	NA	NA	False	CATAAA	-43	NA	22970582	22971318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_22970600_22971300
ES_00030369	chr2	+	6442	17	FSM	ENSMUSG00000026979.17	ENSMUST00000056641.15	4748	17	51	-1745	30	1745	multi-exon	FALSE	canonical	2	7	junction_1	5.02338282435253	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATAAAGCCCTACAGTC	NA	False	NA	NA	False	AGTAAA	-13	NA	24275394	24300486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24275475_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ES_00030371	chr2	+	1576	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	-22	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852411	24862173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ES_00030374	chr2	+	1369	7	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	4	-28	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	42.6122700117649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTAATTTTAG	NA	False	NA	6	True	ATTAAA	-9	NA	24852456	24862145	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_24852638_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ES_00030375	chr2	+	1596	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	4	-26	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	28.4250659629841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTAATTTTAGAA	NA	False	NA	8	True	ATTAAA	-11	NA	24852456	24862147	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_24852638_24853034_24853169_24853467_24853556_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ES_00030378	chr2	+	1338	7	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	8	-26	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTAATTTTAGAA	NA	False	NA	8	True	ATTAAA	-11	NA	24852492	24862147	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ES_00030379	chr2	+	4872	35	FSM	ENSMUSG00000036833.17	ENSMUST00000045295.14	4574	35	-288	-10	-288	10	multi-exon	FALSE	canonical	3	15	junction_1	7.94602248652754	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTCTGGTGTAAAGGT	NA	False	NA	20	True	AATAAA	-23	NA	24865756	24944079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
ES_00030380	chr2	+	2841	22	FSM	ENSMUSG00000036833.17	ENSMUST00000139643.8	2990	22	0	149	0	-149	multi-exon	FALSE	canonical	3	15	junction_1	6.38912057156574	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTGTTCTGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	24866159	24929215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848
ES_00030381	chr2	+	571	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	-36	-52	-36	52	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAATGTTAATAGCCACC	NA	False	NA	NA	False	AATAAA	-35	NA	24875959	24876530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24876000_24876500
ES_00030382	chr2	+	2001	13	FSM	ENSMUSG00000036833.17	ENSMUST00000132082.8	2018	13	17	0	17	0	multi-exon	FALSE	canonical	3	34	junction_8	6.05530070819498	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTACTCTG	4180	False	NA	10	True	AATAAA	-13	NA	24929534	24944069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
ES_00030388	chr2	+	302	3	Intergenic	novelGene_2179	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTCACGGACTTTCCC	NA	False	NA	NA	False	NA	NA	NA	25044848	25146920	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_25044891_25104904_25104931_25146686
ES_00030395	chr2	+	358	1	Genic_Genomic	ENSMUSG00000085830.2	novel	NA	NA	NA	NA	7556	208	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCACTGTCTCGGACAAA	8037	False	NA	NA	False	NA	NA	NA	25188787	25189145	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_25188800_25189100
ES_00030397	chr2	+	1619	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	-19	0	-10	0	multi-exon	FALSE	canonical	3	11	junction_1	40.9536323175369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6647	False	NA	6	True	AGTAAA	-15	NA	25262322	25266815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ES_00030400	chr2	+	1612	7	NNC	ENSMUSG00000026955.14	novel	3121	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	41.0423223297881	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6708	False	NA	6	True	AGTAAA	-15	NA	25262383	25266815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_25263011_25263427_25263530_25264963_25265077_25265744_25265844_25265979_25266088_25266175_25266287_25266363
ES_00030407	chr2	+	3328	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	227	junction_5	21.7649784220956	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390870	25395483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ES_00030409	chr2	+	2213	9	NNC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	83.0929449472096	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390870	25395483	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393202_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ES_00030416	chr2	+	1996	4	FSM	ENSMUSG00000026930.16	ENSMUST00000147873.8	977	4	-7	-1012	-7	50	multi-exon	FALSE	canonical	2	4	junction_1	7.25718035235908	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACCCAGTGCAGTGTACA	NA	False	NA	NA	False	NA	NA	NA	26232293	26238299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26232443_26234613_26234771_26235162_26235372_26236818
ES_00030419	chr2	+	1656	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	-18	0	-9	0	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGTCTTTT	635	False	NA	NA	False	NA	NA	NA	26279341	26283953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
ES_00030426	chr2	+	834	3	FSM	ENSMUSG00000062647.17	ENSMUST00000129673.8	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	4686	junction_2	409.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26802203	26803330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26802814_26802999_26803070_26803176
ES_00030427	chr2	+	593	2	FSM	ENSMUSG00000062647.17	ENSMUST00000147143.2	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	4686	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26802630	26803330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26803070_26803176
ES_00030429	chr2	+	1203	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	33.4388995034227	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26806378	26810195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ES_00030430	chr2	+	2208	3	FSM	ENSMUSG00000015488.15	ENSMUST00000114004.8	2194	3	-14	0	-14	0	multi-exon	FALSE	canonical	3	82	junction_1	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTTCCCATTCAGATT	NA	False	NA	NA	False	ATTAAA	-18	NA	26899923	26907436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26900118_26904104_26904178_26905495
ES_00030433	chr2	+	1662	6	FSM	ENSMUSG00000015488.15	ENSMUST00000114006.8	1648	6	-14	0	-14	0	multi-exon	FALSE	canonical	1	1	junction_5	34.2718543414272	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTCTGCCTGTCAC	NA	False	NA	41	True	AGTAAA	-18	NA	26899923	26911101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899_26908992_26910032
ES_00030441	chr2	+	1107	4	FSM	ENSMUSG00000026833.19	ENSMUST00000152415.2	1102	4	0	-5	0	5	multi-exon	FALSE	canonical	2	4	junction_1	19.3045763140937	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGTGTTCTGAGGACTG	6494	False	NA	8	True	AATAAA	-16	NA	28083003	28104442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28083475_28098089_28098240_28102543_28102700_28104112
ES_00030442	chr2	+	1072	4	FSM	ENSMUSG00000026833.19	ENSMUST00000102879.4	1072	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	11.7756811551038	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGTGGTGTTCTGAG	203	False	NA	3	True	AATAAA	-11	NA	28095670	28104437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104112
ES_00030443	chr2	+	2823	6	FSM	ENSMUSG00000026833.19	ENSMUST00000028177.11	2757	6	-66	0	-66	0	multi-exon	FALSE	canonical	3	35	junction_4	5.85149553533112	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGATTTGCTTATTGTCT	137	False	NA	NA	False	AATAAA	-16	NA	28095604	28120748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104620_28104841_28112562_28112670_28119065
ES_00030445	chr2	+	5586	3	FSM	ENSMUSG00000035829.14	ENSMUST00000040324.14	5466	3	-118	-2	-118	2	multi-exon	FALSE	canonical	3	12	junction_2	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGTTCTTTGTTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	28337834	28345522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28337995_28338703_28338921_28340313
ES_00030446	chr2	+	2528	3	FSM	ENSMUSG00000035772.12	ENSMUST00000146332.2	2504	3	-24	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	8	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358077	28361177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28358155_28358254_28358963_28359434
ES_00030452	chr2	+	3590	18	FSM	ENSMUSG00000026821.17	ENSMUST00000028170.15	3590	18	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	10.8097738677858	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGGTTTTACTGTTTTT	NA	False	NA	25	True	ATTAAA	-26	NA	28403337	28443093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28403573_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
ES_00030455	chr2	+	7688	23	FSM	ENSMUSG00000026812.17	ENSMUST00000113867.9	7682	23	-6	0	0	0	multi-exon	FALSE	canonical	2	11	junction_16	12.8165698535106	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCAGTGTTGATGGAG	3452	False	NA	8	True	AATAAA	-16	NA	28531248	28581179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568978_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ES_00030463	chr2	+	10983	26	FSM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	-13	0	-13	0	multi-exon	FALSE	canonical	3	142	junction_8	57.9545477076648	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTTAGAAGTACTCC	NA	False	NA	NA	False	AATAAA	-18	NA	29014990	29072483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29066888_29066988_29067526_29067615_29069411
ES_00030464	chr2	+	1631	4	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	207	51314	207	708	5prime_fragment	FALSE	canonical	3	157	junction_1	22.939534045447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACTTAATACTTTGTT	NA	False	NA	NA	False	NA	NA	NA	29015210	29021169	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191
ES_00030467	chr2	+	4353	9	FSM	ENSMUSG00000043535.14	ENSMUST00000145422.2	1141	9	-281	-2931	-281	0	multi-exon	FALSE	canonical	3	32	junction_5	108.471194332873	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTTAGAAGTACTCC	NA	False	NA	NA	False	AATAAA	-18	NA	29054188	29072483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29064330_29064496_29066888_29066988_29067526_29067615_29069411
ES_00030470	chr2	+	875	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34419	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAAGGCTCTGTGTTCTGC	5281	False	NA	27	True	AATAAA	-15	NA	29352103	29414800	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ES_00030471	chr2	+	6423	24	FSM	ENSMUSG00000039844.21	ENSMUST00000102872.11	6402	24	-21	0	8	0	multi-exon	TRUE	canonical	3	225	junction_2	42.1435569818812	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGTTACCATAGCAATAG	NA	False	NA	NA	False	ATTAAA	-6	NA	29509760	29630990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29510076_29569144_29569282_29569748_29569863_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
ES_00030472	chr2	+	7044	23	NIC	ENSMUSG00000039844.21	novel	6402	24	NA	NA	8	735	intron_retention	FALSE	canonical	3	94	junction_2	58.96679272801	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGCACGCGCGCGCATGG	NA	False	NA	NA	False	NA	NA	NA	29509760	29631725	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29510076_29569144_29569282_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
ES_00030473	chr2	+	4222	24	FSM	ENSMUSG00000039844.21	ENSMUST00000238899.2	4205	24	-17	0	-17	0	multi-exon	FALSE	canonical	2	7	junction_1	80.1360138660296	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCAGCCAGCAGGTTCCTA	NA	False	NA	NA	False	NA	NA	NA	29533809	29628987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29533927_29569144_29569282_29569748_29569863_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
ES_00030476	chr2	+	1044	2	FSM	ENSMUSG00000026798.11	ENSMUST00000138233.2	1044	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGCTGGTTGTCCTAG	NA	False	NA	27	True	AATAAA	-17	NA	29685576	29686998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29686042_29686419
ES_00030480	chr2	+	681	6	FSM	ENSMUSG00000069020.10	ENSMUST00000147325.2	681	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	146.238708965855	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGGTGTTCCTGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	29717372	29733433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732473_29732559_29732732_29732782_29733114
ES_00030482	chr2	+	2714	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	1	0	1	0	multi-exon	FALSE	canonical	2	9	junction_10	4.78288961380578	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACAGCTGAGCCTCTTT	NA	False	NA	19	True	AATAAA	-30	NA	29759506	29772852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
ES_00030485	chr2	+	2249	16	FSM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	277.041625432393	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7128	False	NA	13	True	AATAAA	-17	NA	29779731	29812551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ES_00030486	chr2	+	2373	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113763.8	2364	17	-9	0	-9	0	multi-exon	FALSE	canonical	3	27	junction_1	425.292234087339	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7184	False	NA	13	True	AATAAA	-17	NA	29779787	29812551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29779934_29780777_29781015_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ES_00030487	chr2	+	3101	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113757.8	3082	21	-19	0	-9	0	multi-exon	FALSE	canonical	3	101	junction_2	283.670455810964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTTATTTTATTT	7184	False	NA	NA	False	NA	NA	NA	29779787	29821107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ES_00030490	chr2	+	2312	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	-7	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7219	False	NA	13	True	AATAAA	-17	NA	29779822	29812551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ES_00030491	chr2	+	3750	21	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	193.045616370846	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTCAGACTCCTTTGAT	7220	False	NA	11	True	AATAAA	-11	NA	29779823	29821755	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ES_00030492	chr2	+	3651	20	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	268.155761574078	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTCCTTTGATT	7223	False	NA	12	True	AATAAA	-12	NA	29779826	29821756	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ES_00030493	chr2	+	3600	20	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	269.578043114865	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7219	False	NA	14	True	AATAAA	-14	NA	29779822	29821758	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ES_00030494	chr2	+	3959	22	FSM	ENSMUSG00000026790.20	ENSMUST00000046571.14	3959	22	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	346.4391129144	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7303	False	NA	14	True	AATAAA	-14	NA	29779906	29821758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29779934_29780782_29781015_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ES_00030497	chr2	+	885	3	FSM	ENSMUSG00000019715.15	ENSMUST00000154490.8	860	3	-25	0	-23	0	multi-exon	FALSE	canonical	3	530	junction_2	57.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAGGAAGACAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	29825414	29828967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29825611_29826021_29826250_29828506
ES_00030499	chr2	+	395	2	FSM	ENSMUSG00000019715.15	ENSMUST00000123608.2	468	2	73	0	73	0	multi-exon	FALSE	canonical	3	512	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGTGTGTGTTGGCCTTC	5061	False	NA	NA	False	NA	NA	NA	29832446	29833799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29832779_29833736
ES_00030502	chr2	+	7958	56	FSM	ENSMUSG00000057738.15	ENSMUST00000113717.8	7958	56	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_36	107.955276935321	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCTCCTCTTTATCT	NA	False	NA	21	True	AATAAA	-21	NA	29855571	29921463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29904169_29904185_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
ES_00030503	chr2	+	8216	56	FSM	ENSMUSG00000057738.15	ENSMUST00000095083.11	7883	56	-333	0	-213	0	multi-exon	TRUE	canonical	3	62	junction_22	102.057131949797	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCTCCTCTTTATCT	NA	False	NA	21	True	AATAAA	-21	NA	29855358	29921463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29891111_29891172_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
ES_00030509	chr2	+	2824	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	0	0	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29951864	29962589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ES_00030511	chr2	+	2834	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	0	0	0	0	multi-exon	FALSE	canonical	3	3891	junction_1	4471.27957761808	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29956467	29962589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ES_00030512	chr2	+	804	6	FSM	ENSMUSG00000026785.15	ENSMUST00000125346.8	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	10.1508620323596	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCCTCCCACCCACTCT	1318	False	NA	NA	False	NA	NA	NA	29967695	29971137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29967812_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064
ES_00030513	chr2	+	3005	22	NIC	ENSMUSG00000026785.15	novel	3460	21	NA	NA	5	-6	combination_of_known_junctions	TRUE	canonical	3	77	junction_7	19.7860437769826	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGTAGCCAGGCCAGGGG	1323	False	NA	9	True	AATAAA	-11	NA	29967700	29981019	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29967812_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
ES_00030514	chr2	+	3460	21	FSM	ENSMUSG00000026785.15	ENSMUST00000148650.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	20.1955440629858	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCCAGGGGTTGTGT	1377	False	NA	15	True	AATAAA	-17	NA	29967754	29981025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29967812_29969545_29969775_29969937_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
ES_00030516	chr2	+	3449	21	FSM	ENSMUSG00000026785.15	ENSMUST00000137240.8	3449	21	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	28.2455306199052	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTTGTGTAGTGTCTAG	2388	False	NA	24	True	AATAAA	-26	NA	29968765	29981034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29968803_29969545_29969775_29969937_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
ES_00030525	chr2	+	1297	11	ISM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	100	0	2	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156832	30172160	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ES_00030530	chr2	+	506	2	FSM	ENSMUSG00000026858.19	ENSMUST00000137441.2	1793	2	-16	1303	-4	-696	multi-exon	FALSE	canonical	3	32	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGCAGCAGAAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	30254261	30258013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30254318_30257563
ES_00030538	chr2	+	1328	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	-136	0	-21	0	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697816	30713029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
ES_00030542	chr2	+	3054	5	FSM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	-15	0	-15	0	multi-exon	FALSE	canonical	1	21	junction_2	34.4990941910074	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGAGCTTTTCCTTG	NA	False	NA	13	True	AATAAA	-18	NA	30842955	30849027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30843236_30843763_30844030_30845789_30845966_30846459_30846588_30846823
ES_00030543	chr2	+	4785	4	FSM	ENSMUSG00000026848.15	ENSMUST00000133544.8	4775	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	100	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTTTCCTGAGCTTTTC	NA	False	NA	9	True	AATAAA	-14	NA	30842980	30849023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30843236_30843763_30845966_30846459_30846588_30846823
ES_00030547	chr2	+	220	2	Antisense	novelGene_ENSMUSG00000075415.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACACCTTTCATCCCAG	7402	False	NA	NA	False	NA	NA	NA	30960387	30975027	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_30960414_30974833
ES_00030551	chr2	+	4653	8	FSM	ENSMUSG00000062661.7	ENSMUST00000000199.8	4653	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	7.16852530873965	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTGTGAGCCTGGT	NA	False	NA	NA	False	ATTAAA	-22	NA	31135834	31186001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31136255_31160623_31160649_31170677_31170817_31172320_31172400_31174158_31174248_31174673_31174752_31177298_31177416_31182295
ES_00030554	chr2	+	1702	17	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	26	11123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	722.308925317796	871	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGAGTCAATTAGTGCGT	NA	False	NA	NA	False	NA	NA	NA	31360244	31421807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383_31410678_31421768
ES_00030555	chr2	+	1695	17	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	26	11123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	722.308925317796	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGAGTCAATTAGTGCGT	NA	False	NA	NA	False	NA	NA	NA	31360244	31421807	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383_31410684_31421781
ES_00030557	chr2	+	3269	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	-9	8	-9	0	multi-exon	TRUE	canonical	3	465	junction_18	67.3624112131124	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTAGTCTGTTTTGTT	484	False	NA	28	True	AATAAA	-29	NA	31462653	31507530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ES_00030559	chr2	+	3179	19	NNC	ENSMUSG00000026843.16	novel	3648	18	NA	NA	2	0	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	636	False	NA	29	True	AATAAA	-30	NA	31462805	31507531	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
ES_00030561	chr2	+	3648	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	659	False	NA	29	True	AATAAA	-30	NA	31462828	31507531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
ES_00030563	chr2	+	2092	8	FSM	ENSMUSG00000039356.16	ENSMUST00000149094.8	2076	8	-16	0	-12	0	multi-exon	FALSE	canonical	3	842	junction_5	49.3699073839727	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAGAAAACCAAAGA	NA	False	NA	-20	True	NA	NA	NA	31560714	31570992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31566749_31568462_31568640_31569862_31569992_31570501
ES_00030566	chr2	+	6502	11	FSM	ENSMUSG00000026842.17	ENSMUST00000075759.13	6327	11	-175	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	36.9031163995671	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTGGTCTGTGATTC	5579	False	NA	20	True	AATAAA	-21	NA	31578387	31693553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31579955_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
ES_00030567	chr2	+	5801	11	FSM	ENSMUSG00000026842.17	ENSMUST00000028190.13	5794	11	-7	0	-7	0	multi-exon	FALSE	canonical	3	93	junction_1	30.1131200641846	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGGTCCTGATGTGTC	NA	False	NA	NA	False	CATAAA	-17	NA	31649947	31694239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31650128_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
ES_00030572	chr2	+	591	1	FSM	ENSMUSG00000081480.2	ENSMUST00000121807.2	1406	1	658	157	658	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	411	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTGCTACAGGAATAGAC	NA	False	NA	NA	False	NA	NA	NA	31875728	31876319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31875700_31876300
ES_00030575	chr2	+	667	4	FSM	ENSMUSG00000001855.16	ENSMUST00000123062.2	667	4	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_1	8.73053390247253	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATTTTTTTAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	31915306	31921734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31915331_31916859_31916939_31920718_31920810_31921261
ES_00030577	chr2	+	8825	30	FSM	ENSMUSG00000039262.17	ENSMUST00000036691.14	8612	30	-213	0	-213	0	multi-exon	TRUE	canonical	3	120	junction_19	84.1956133534682	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGTCGGTTTTCTATC	6437	False	NA	24	True	AATAAA	-40	NA	32040880	32124549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109225_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
ES_00030579	chr2	+	8675	31	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	239	junction_29	73.1573342567617	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACATGCTTTCTCAGGCT	6650	False	NA	8	True	AATAAA	-24	NA	32041093	32124533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
ES_00030580	chr2	+	10671	32	FSM	ENSMUSG00000039262.17	ENSMUST00000069817.15	10671	32	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_16	123.67091540608	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGCTTTCTCAGGCTG	6716	False	NA	9	True	AATAAA	-25	NA	32041159	32124534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32102898_32104960_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
ES_00030581	chr2	+	8284	29	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	78	-10	combination_of_known_splicesites	FALSE	canonical	2	5	junction_27	99.8764287527751	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGCCAAACATGCTT	6794	False	NA	-1	True	AATAAA	-15	NA	32041237	32124524	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116956_32117049_32120622
ES_00030587	chr2	+	4361	26	FSM	ENSMUSG00000002546.18	ENSMUST00000239447.2	4361	26	-8	8	-8	0	multi-exon	FALSE	canonical	3	80	junction_7	19.1852443299532	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTAGGGTGTTC	NA	False	NA	22	True	AATAAA	-15	NA	32178256	32197925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32187765_32187847_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
ES_00030592	chr2	+	2604	15	FSM	ENSMUSG00000039205.17	ENSMUST00000113331.8	2604	15	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	14.676789950984	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCACCAGCACTGTGTC	NA	False	NA	12	True	AATAAA	-23	NA	32253816	32268315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ES_00030593	chr2	+	2670	16	FSM	ENSMUSG00000039205.17	ENSMUST00000113338.9	2666	16	-5	1	0	0	multi-exon	FALSE	canonical	3	33	junction_2	18.8985596158955	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253816	32268309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ES_00030602	chr2	+	1614	2	NNC	ENSMUSG00000039157.13	novel	370	3	NA	NA	78	9240	intron_retention	FALSE	canonical	2	3	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTAGCCCCAATTAAAT	1687	False	NA	NA	False	NA	NA	NA	32425448	32435442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_32426245_32434624
ES_00030610	chr2	+	2449	7	FSM	ENSMUSG00000026811.19	ENSMUST00000095044.10	2394	7	-57	2	8	0	multi-exon	FALSE	canonical	3	38	junction_2	28.6225435627234	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3312	False	NA	5	True	AATAAA	-14	NA	32496980	32510816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32497124_32498053_32498109_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ES_00030611	chr2	+	2299	5	NNC	ENSMUSG00000026811.19	novel	2402	6	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	39.7264080933577	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3312	False	NA	5	True	AATAAA	-14	NA	32496980	32510816	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_32497124_32502235_32502416_32504792_32505200_32508508_32508617_32509355
ES_00030615	chr2	+	2335	6	NNC	ENSMUSG00000026811.19	novel	2394	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	41.6768520884195	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	3369	False	NA	7	True	AATAAA	-16	NA	32497037	32510818	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_32497124_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509355
ES_00030620	chr2	+	2187	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	-153	0	-153	0	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGAAGTGAGTGTATT	NA	False	NA	11	True	AATAAA	-15	NA	32519362	32525064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ES_00030621	chr2	+	2074	6	NNC	ENSMUSG00000026817.15	novel	2034	6	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_2	123.418637166353	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32519473	32525066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_32519629_32519860_32519893_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ES_00030624	chr2	+	3403	15	FSM	ENSMUSG00000026814.17	ENSMUST00000167841.8	3403	15	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	47.9038684475993	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTTCCAGCAACACAG	582	False	NA	NA	False	AATAAA	-24	NA	32536633	32572681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32537037_32547530_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
ES_00030628	chr2	+	2749	4	FSM	ENSMUSG00000009563.17	ENSMUST00000149720.3	2712	4	-29	-8	2	6	multi-exon	FALSE	canonical	3	233	junction_3	10.6562449087639	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTTTCTTACTGTCCT	602	False	NA	15	True	AATAAA	-26	NA	32647258	32652262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32648949_32649538_32649715_32650600_32650729_32651507
ES_00030631	chr2	+	3708	14	FSM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	6	0	6	0	multi-exon	TRUE	canonical	3	292	junction_12	30.0169577319103	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTCATGTGCTGCTGGG	8863	False	NA	19	True	AATAAA	-19	NA	32766131	32815266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080_32812237_32812569_32812687_32812867_32812976_32813058_32813171_32813442
ES_00030633	chr2	+	1242	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATTGTTGGGGCTGCA	5641	False	NA	24	True	AATAAA	-25	NA	32851570	32854508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ES_00030638	chr2	+	1641	11	FSM	ENSMUSG00000038696.15	ENSMUST00000124443.8	1630	11	-11	0	-11	0	multi-exon	FALSE	canonical	3	20	junction_1	60.6699266523374	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAACAAAGAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	34296862	34513487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_34297267_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ES_00030639	chr2	+	2968	10	NIC	ENSMUSG00000038696.15	novel	3111	12	NA	NA	3	-9	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	85.6501641404379	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACCCTCTTTTGTAT	NA	False	NA	NA	False	AATAAA	-5	NA	34296892	34514952	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_34297267_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ES_00030640	chr2	+	3111	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	34297194	34514961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ES_00030641	chr2	+	3018	11	FSM	ENSMUSG00000038696.15	ENSMUST00000113126.3	3018	11	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	17.1767284428671	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTATATTGCTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	34322036	34514962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ES_00030644	chr2	+	3413	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	-800	0	-216	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTACATGAACCAAAACAT	NA	False	NA	NA	False	ATTAAA	-29	NA	34662106	34667343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ES_00030659	chr2	+	6422	14	NIC	ENSMUSG00000026883.18	novel	6287	16	NA	NA	-237	0	intron_retention	FALSE	canonical	3	43	junction_9	57.3698681813714	1766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	NA	False	NA	9	True	ATTAAA	-19	NA	35551124	35621004	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609930_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ES_00030661	chr2	+	6325	14	ISM	ENSMUSG00000026883.18	ENSMUST00000091010.12	6455	16	39238	-4	-75	-1	3prime_fragment	FALSE	canonical	3	179	junction_9	30.3936695370762	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGACTTGCCTTTCT	NA	False	NA	8	True	ATTAAA	-18	NA	35551286	35621003	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ES_00030662	chr2	+	6392	14	FSM	ENSMUSG00000026883.18	ENSMUST00000065001.12	6392	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	58.8774677870724	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	379	False	NA	9	True	ATTAAA	-19	NA	35582005	35621004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_35582423_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ES_00030668	chr2	+	635	5	FSM	ENSMUSG00000035437.16	ENSMUST00000148470.8	615	5	-20	0	-20	0	multi-exon	FALSE	canonical	3	29	junction_1	110.66023450183	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATGGGACTCCTGAGA	NA	False	NA	NA	False	NA	NA	NA	37342236	37365375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_37342314_37359527_37359589_37362306_37362527_37363590_37363796_37365303
ES_00030669	chr2	+	4245	19	FSM	ENSMUSG00000035437.16	ENSMUST00000066055.10	4247	19	0	2	0	-2	multi-exon	FALSE	canonical	3	120	junction_1	35.7809263624913	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAATATATATTTAATT	NA	False	NA	NA	False	NA	NA	NA	37342256	37434972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114
ES_00030670	chr2	+	4869	26	FSM	ENSMUSG00000035437.16	ENSMUST00000112920.2	4847	26	-22	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	33.7498088883478	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTATGTTTGCATAT	NA	False	NA	24	True	ATTAAA	-35	NA	37342256	37456466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
ES_00030671	chr2	+	4702	26	NIC	ENSMUSG00000035437.16	novel	4847	26	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	48.8404094986928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGCTTCATACAAAAGTA	NA	False	NA	7	True	ATTAAA	-18	NA	37342267	37456449	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_37342314_37359527_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
ES_00030680	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ES_00030681	chr2	+	1337	4	NIC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	449.53704580997	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_38898357_38903128_38903200_38903734_38903912_38905069
ES_00030682	chr2	+	4167	3	FSM	ENSMUSG00000026755.15	ENSMUST00000135049.2	4167	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_2	32	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38900029	38905889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_38903200_38903734_38903912_38905069
ES_00030684	chr2	+	1608	2	Genic_Genomic	ENSMUSG00000082536.2	novel	1365	1	NA	NA	53	337	multi-exon	FALSE	canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGAAGATCGCAGAAGA	NA	False	NA	NA	False	ATTAAA	-39	NA	40445816	40447465	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_40447301_40447341
ES_00030685	chr2	+	428	2	Intergenic	novelGene_2247	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	84	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACATTAG	NA	False	NA	NA	False	NA	NA	NA	43085693	43086563	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_43085874_43086315
ES_00030686	chr2	+	502	3	Intergenic	novelGene_2245	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_2	1.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-26	NA	43085690	43086543	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_43085874_43086137_43086229_43086315
ES_00030693	chr2	+	6876	26	FSM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	-23	3	-23	-3	multi-exon	TRUE	canonical	3	10	junction_25	6.95056832208705	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTCTGGTGTCCTTA	NA	False	NA	14	True	AATAAA	-15	NA	49509286	49664787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821_49648935_49661175
ES_00030695	chr2	+	13168	34	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-106	4382	intron_retention	FALSE	canonical	0	0	junction_15	139.06799837718	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGGTGTTTATTTTT	NA	False	NA	9	True	AATAAA	-10	NA	51962737	52016777	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00030696	chr2	+	8566	36	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-80	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	132.856178183902	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTAGTTAGTGCCTGCC	NA	False	NA	22	True	ATTAAA	-17	NA	51962763	52012393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00030697	chr2	+	8836	35	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-80	0	intron_retention	FALSE	canonical	0	0	junction_15	126.478033296594	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTAGTTAGTGCCTGCC	NA	False	NA	22	True	ATTAAA	-17	NA	51962763	52012393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00030698	chr2	+	8264	36	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-5	-10	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	138.623259820512	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGGAACCAGCAAATGTT	NA	False	NA	-9	True	ATTAAA	-3	NA	51962838	52012111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51962958_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983578_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00030699	chr2	+	8620	35	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-236	0	at_least_one_novel_splicesite	TRUE	canonical	3	117	junction_16	133.152395974061	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTAGTTAGTGCCTGCC	NA	False	NA	22	True	ATTAAA	-17	NA	51962607	52012393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983578_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00030708	chr2	+	5620	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_2	27.9815089612766	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57128393	57260731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ES_00030710	chr2	+	4520	21	FSM	ENSMUSG00000026991.21	ENSMUST00000168631.8	4484	21	-36	0	-36	0	multi-exon	FALSE	canonical	0	0	junction_9	23.7412615503052	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTTCTTGCAGTTC	NA	False	NA	20	True	AATAAA	-20	NA	58991157	59185548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
ES_00030711	chr2	+	4614	22	FSM	ENSMUSG00000026991.21	ENSMUST00000102754.11	4614	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	23.3372202787765	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGTTCTTGCAGTTCT	NA	False	NA	21	True	AATAAA	-21	NA	58991193	59185549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ES_00030712	chr2	+	4122	22	FSM	ENSMUSG00000026991.21	ENSMUST00000183359.8	4122	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.5631360146304	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAATAAAATGGATGCCC	NA	False	NA	NA	False	AATAAA	-31	NA	58991224	59185168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138428_59138902_59140445_59140635_59142040_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ES_00030713	chr2	+	4596	22	NNC	ENSMUSG00000026991.21	novel	4614	22	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	24.1264619826541	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGTTCTTGCAGTTCT	NA	False	NA	21	True	AATAAA	-21	NA	58991205	59185549	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135536_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ES_00030714	chr2	+	4278	20	NIC	ENSMUSG00000026991.21	novel	4484	21	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	25.5773228853877	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTGTTCTTGCAGTT	NA	False	NA	19	True	AATAAA	-19	NA	58991363	59185547	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_58991473_59045021_59045159_59096731_59096845_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
ES_00030721	chr2	+	527	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27278	-4	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	58.0344725141876	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGTGGTGGTATACCC	2608	False	NA	NA	False	NA	NA	NA	60214590	60242919	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242712
ES_00030722	chr2	+	773	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-140	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	74.2473344078201	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9206	False	NA	NA	False	NA	NA	NA	60241728	60242923	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_60242062_60242190_60242353_60242508_60242576_60242712
ES_00030723	chr2	+	566	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_60242062_60242190_60242353_60242712
ES_00030736	chr2	+	6894	11	NNC	ENSMUSG00000027035.11	novel	7038	10	NA	NA	11	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	18.4759302878096	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATGAGTGTCCTTTATT	NA	False	NA	5	True	AATAAA	-18	NA	68691824	68944626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943417_68943520
ES_00030737	chr2	+	6378	7	NNC	ENSMUSG00000027035.11	novel	7038	10	NA	NA	88224	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	20.591260281974	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATGAGTGTCCTTTATT	519	False	NA	5	True	AATAAA	-18	NA	68878478	68944626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_68878634_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943469_68943572
ES_00030746	chr2	+	6245	14	FSM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	98.4826299525295	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553436	69584356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69553708_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ES_00030750	chr2	+	2260	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619979	69627567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
ES_00030754	chr2	+	2105	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	-17	0	-17	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69691888	69702190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ES_00030755	chr2	+	666	6	FSM	ENSMUSG00000068882.14	ENSMUST00000156057.2	666	6	0	0	0	0	multi-exon	FALSE	canonical	3	1543	junction_5	106.585927776607	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAGACACAAGCCAGGAA	NA	False	NA	NA	False	TATAAA	-41	NA	69693634	69699494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69693660_69696533_69696638_69696831_69697007_69697615_69697897_69699122_69699195_69699485
ES_00030756	chr2	+	991	6	FSM	ENSMUSG00000068882.14	ENSMUST00000132603.2	991	6	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	654.178874620696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	14	True	TATAAA	-5	NA	69699122	69701854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701024_69701178_69701465
ES_00030758	chr2	+	7928	39	NIC	ENSMUSG00000044308.18	novel	8072	39	NA	NA	84	0	combination_of_known_junctions	FALSE	non_canonical	3	25	junction_2	26.5227127878882	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAATGTTTATGTTTTC	4467	False	NA	23	True	AATAAA	-37	NA	69727730	69854357	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_69728184_69744757_69744898_69747423_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821970_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
ES_00030759	chr2	+	8024	39	NIC	ENSMUSG00000044308.18	novel	8072	39	NA	NA	0	-3	combination_of_known_junctions	TRUE	non_canonical	3	58	junction_28	22.6070858893837	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTGAATGTTTATGTT	4383	False	NA	20	True	AATAAA	-34	NA	69727646	69854354	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_69728184_69744757_69744898_69747420_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821982_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
ES_00030764	chr2	+	1314	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	-118	0	-104	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491815	70519704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
ES_00030770	chr2	+	2483	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	-17	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042084	71093635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ES_00030771	chr2	+	2552	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112139.8	2483	16	-60	-9	-25	0	multi-exon	FALSE	canonical	3	42	junction_15	151.295501879233	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042024	71093647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ES_00030777	chr2	+	2783	9	FSM	ENSMUSG00000041921.17	ENSMUST00000139045.8	2770	9	-13	0	5	0	multi-exon	TRUE	canonical	3	42	junction_5	11.7147076361299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283681	71355538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71283743_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ES_00030778	chr2	+	1286	10	NIC	ENSMUSG00000041921.17	novel	837	9	NA	NA	-9481	-5	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	19.9171121908948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAAACCTATTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	71331120	71355530	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_71331214_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ES_00030782	chr2	+	5874	25	NIC	ENSMUSG00000027111.17	novel	4310	26	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	444	junction_20	38.1094686032516	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGTAATTTTATTTATT	NA	False	NA	96	True	TATAAA	-11	NA	71617282	71688757	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
ES_00030786	chr2	+	6663	12	FSM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_11	6.87671841784634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTTGTTATGTGTCGCT	3325	False	NA	NA	False	AATAAA	-16	NA	72116071	72237846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72232332
ES_00030787	chr2	+	1273	10	FSM	ENSMUSG00000004085.15	ENSMUST00000150126.8	1227	10	-13	-33	0	33	multi-exon	FALSE	canonical	3	24	junction_9	4.98887651569859	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGCATAGTGTTAGC	3361	False	NA	NA	False	NA	NA	NA	72116107	72220216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813
ES_00030793	chr2	+	678	2	FSM	ENSMUSG00000063714.16	ENSMUST00000137941.2	628	2	60	-110	60	40	multi-exon	FALSE	canonical	3	196	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGACAGCTAAACAAGACAGG	NA	False	NA	NA	False	AATAAA	-44	NA	72817644	72819061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72817977_72818715
ES_00030796	chr2	+	1897	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTACTTTGGTTGTA	NA	False	NA	NA	False	AATAAA	-36	NA	73142997	73151140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
ES_00030806	chr2	+	5173	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	-23	0	-17	0	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	7458	False	NA	3	True	ATTAAA	-18	NA	75489587	75499751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ES_00030808	chr2	+	4911	6	FSM	ENSMUSG00000059005.14	ENSMUST00000141974.2	754	6	-205	-3952	-205	0	multi-exon	FALSE	canonical	3	8907	junction_2	789.7217231405	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	NA	False	NA	3	True	ATTAAA	-18	NA	75492627	75499751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
ES_00030811	chr2	+	2601	14	FSM	ENSMUSG00000042410.17	ENSMUST00000111952.9	2589	14	-12	0	0	0	multi-exon	FALSE	canonical	3	643	junction_12	57.9822458033696	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATGGTTGTTGTTAT	487	False	NA	NA	False	AATAAA	-21	NA	75662520	75725552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388
ES_00030816	chr2	+	2320	10	NNC	ENSMUSG00000042369.9	novel	1898	10	NA	NA	32	5716	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	106.437717254369	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTGATTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	76200359	76219828	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76219060
ES_00030817	chr2	+	585	2	FSM	ENSMUSG00000042359.19	ENSMUST00000133275.2	593	2	7	1	7	-1	multi-exon	FALSE	canonical	3	11	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAACTTTGTTTTCCTC	NA	False	NA	NA	False	ATTAAA	-17	NA	76236858	76238274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_76237034_76237864
ES_00030818	chr2	+	6910	26	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	0	-1083	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	8.49621092016906	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGCTCTAGAAATGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	76236901	76429904	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ES_00030819	chr2	+	3853	25	FSM	ENSMUSG00000042359.19	ENSMUST00000111930.9	3853	25	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_10	10.6640621820309	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACAGAGTGCTGGCGTG	NA	False	NA	NA	False	AATAAA	-35	NA	76236901	76426940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ES_00030828	chr2	+	4266	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	173	-2807	-8	2107	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAATTGCTTCATTGATT	NA	False	NA	NA	False	AATAAA	-18	NA	80447561	80464812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
ES_00030830	chr2	+	1993	4	FSM	ENSMUSG00000027001.11	ENSMUST00000151204.2	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	40.1441845795323	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAGTACATACTGCAAA	NA	False	NA	NA	False	AATAAA	-15	NA	80447609	80462705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_80447951_80451537_80451585_80454669_80454705_80461135
ES_00030833	chr2	+	761	4	FSM	ENSMUSG00000027091.15	ENSMUST00000130948.8	755	4	-7	1	-7	-1	multi-exon	FALSE	canonical	3	844	junction_1	33.4697209761633	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAGTTTCGATTTGTCT	NA	False	NA	NA	False	AATAAA	-19	NA	83474817	83488645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352
ES_00030836	chr2	+	566	2	FSM	ENSMUSG00000027091.15	ENSMUST00000145099.2	566	2	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAAATGTAAGTTCTCTC	NA	False	NA	NA	False	ACTAAA	-3	NA	83486963	83488410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_83487472_83488352
ES_00030838	chr2	+	8823	30	NIC	ENSMUSG00000027087.12	novel	7054	30	NA	NA	-1773	-1	intron_retention	FALSE	canonical	3	66	junction_1	18.5760640227655	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGTGGATTCTATC	NA	False	NA	20	True	AATAAA	-20	NA	83552967	83637259	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_83555264_83566856_83566985_83578196_83578289_83586149_83586265_83592211_83592274_83593995_83594042_83596111_83596238_83596970_83597016_83598638_83598683_83599035_83599093_83600396_83600450_83601478_83601682_83606711_83606904_83609357_83609404_83612282_83612391_83614148_83614208_83615676_83615832_83619260_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
ES_00030839	chr2	+	7054	30	FSM	ENSMUSG00000027087.12	ENSMUST00000028499.11	7054	30	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	22.0930902622631	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTGGATTCTATCC	NA	False	NA	21	True	AATAAA	-21	NA	83554740	83637260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_83555264_83566853_83566985_83578196_83578289_83586149_83586265_83592211_83592274_83593995_83594042_83596111_83596238_83596970_83597016_83598638_83598683_83599035_83599093_83600396_83600450_83601478_83601682_83606711_83606904_83609357_83609404_83612282_83612391_83614148_83614208_83615676_83615832_83619260_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
ES_00030852	chr2	+	4268	14	FSM	ENSMUSG00000027075.17	ENSMUST00000111625.2	2487	14	-1797	16	-22	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2969598465759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGCTGGTGTGTATC	NA	False	NA	9	True	AATAAA	-11	NA	84669171	84693922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ES_00030853	chr2	+	2352	15	NIC	ENSMUSG00000027075.17	novel	2539	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	NA	False	NA	12	True	AATAAA	-14	NA	84669757	84693925	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ES_00030854	chr2	+	2556	15	FSM	ENSMUSG00000027075.17	ENSMUST00000111624.8	2556	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	20.7551321413303	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	307	False	NA	12	True	AATAAA	-14	NA	84670542	84693925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84670839_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ES_00030856	chr2	+	2627	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	-44	0	3	0	multi-exon	FALSE	canonical	3	20	junction_9	6.42693982821961	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84766963	84788853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ES_00030857	chr2	+	905	4	ISM	ENSMUSG00000027074.15	ENSMUST00000141650.8	835	6	74	3269	31	2987	5prime_fragment	FALSE	canonical	1	1	junction_1	18.263503375737	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCCTGGTTTCCTTTC	NA	False	NA	NA	False	TATAAA	-16	NA	84767063	84771661	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_84767194_84767905_84768214_84768566_84768697_84771324
ES_00030859	chr2	+	2739	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867577	84877453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ES_00030861	chr2	+	2734	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	-14	1	-14	-1	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGATGTCCTTATGTCT	NA	False	NA	19	True	AATAAA	-15	NA	84867780	84877449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ES_00030865	chr2	+	5763	12	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	44.7158152361265	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGGATTGTGGTGTGTG	NA	False	NA	12	True	AATAAA	-21	NA	84878362	84903392	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ES_00030870	chr2	+	8609	36	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2162	-3544	2162	3544	3prime_fragment	FALSE	canonical	3	459	junction_11	64.3521941969284	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGCAAAGTCAAATAATG	NA	False	NA	NA	False	AATAAA	-34	NA	90509720	90570216	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
ES_00030872	chr2	+	7709	30	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	1	3527	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	121.013221435461	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATGAACCTCCATAAAACA	NA	False	NA	NA	False	AATAAA	-17	NA	90520437	90570199	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532907_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
ES_00030875	chr2	+	4617	18	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_12	87.2084167868991	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTCTTGATTAGCAG	NA	False	NA	18	True	AATAAA	-22	NA	90575890	90611365	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90598300_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ES_00030880	chr2	+	4815	5	ISM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	28157	0	-2016	0	3prime_fragment	FALSE	canonical	3	295	junction_2	26.5459507269941	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTCTTGATTAGCAG	4353	False	NA	18	True	AATAAA	-22	NA	90603870	90611365	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ES_00030883	chr2	+	2585	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	0	11	0	-11	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTATTTCTAGAGGTGT	96	False	NA	NA	False	ATTAAA	-1	NA	90677498	90697143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ES_00030884	chr2	+	2301	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	-20	0	0	0	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	194	False	NA	7	True	NA	NA	NA	90677596	90696984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ES_00030887	chr2	+	574	3	FSM	ENSMUSG00000027282.18	ENSMUST00000135026.2	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	2343	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGACATTTATTTCTCC	NA	False	NA	131	True	NA	NA	NA	90691583	90695815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90691794_90693933_90694010_90695527
ES_00030890	chr2	+	4730	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	-31	3	combination_of_known_junctions	FALSE	canonical	3	185	junction_9	161.021958148313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTTTGTCTTCTGCG	2271	False	NA	11	True	ATTAAA	-11	NA	90770695	90849838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ES_00030891	chr2	+	4727	14	FSM	ENSMUSG00000005506.17	ENSMUST00000111451.10	4678	14	-46	-3	-31	3	multi-exon	FALSE	canonical	3	395	junction_7	113.564516501784	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTTTGTCTTCTGCG	2271	False	NA	11	True	ATTAAA	-11	NA	90770695	90849838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ES_00030892	chr2	+	4845	15	FSM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	-15	0	0	0	multi-exon	FALSE	canonical	3	193	junction_2	185.405677653416	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2302	False	NA	8	True	ATTAAA	-8	NA	90770726	90849835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ES_00030893	chr2	+	4822	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	-1	3	combination_of_known_junctions	FALSE	canonical	3	193	junction_2	195.382630878437	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTTTGTCTTCTGCG	2316	False	NA	11	True	ATTAAA	-11	NA	90770740	90849838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ES_00030894	chr2	+	7768	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	151	junction_14	215.029720299881	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTTTGTCTTCTGCG	2457	False	NA	11	True	ATTAAA	-11	NA	90770881	90849838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ES_00030895	chr2	+	4614	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	280	junction_7	133.754300931789	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	2376	False	NA	15	True	ATTAAA	-15	NA	90770800	90849842	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ES_00030896	chr2	+	4431	13	FSM	ENSMUSG00000005506.17	ENSMUST00000111448.2	4432	13	1	0	1	0	multi-exon	FALSE	canonical	3	185	junction_8	178.716935558876	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	90828924	90849842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ES_00030897	chr2	+	4235	12	NIC	ENSMUSG00000005506.17	novel	4441	13	NA	NA	16	3	combination_of_known_splicesites	FALSE	canonical	3	55	junction_9	203.022369813349	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTTTGTCTTCTGCG	NA	False	NA	11	True	ATTAAA	-11	NA	90828939	90849838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90843043_90843188_90843582_90843748_90846910
ES_00030906	chr2	+	2074	11	FSM	ENSMUSG00000027257.14	ENSMUST00000168916.8	1859	11	-217	2	-217	-1	multi-exon	FALSE	canonical	3	10	junction_1	24.287651183266	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGCGTCTTTTGATAG	4533	False	NA	18	True	AATAAA	-15	NA	91086940	91095022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91087272_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ES_00030907	chr2	+	497	4	FSM	ENSMUSG00000027257.14	ENSMUST00000144394.8	438	4	-4	-55	-4	0	multi-exon	FALSE	canonical	3	32	junction_1	20.0665559243899	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGGGCTTTCCACCGGCC	4746	False	NA	NA	False	NA	NA	NA	91087153	91091646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515
ES_00030908	chr2	+	1866	11	FSM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	-4	0	-4	0	multi-exon	FALSE	canonical	3	29	junction_1	20.1345474247622	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4746	False	NA	19	True	AATAAA	-16	NA	91087153	91095023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ES_00030919	chr2	+	6511	43	FSM	ENSMUSG00000040549.17	ENSMUST00000046769.16	6511	43	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_41	104.161003927713	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCCATTTCCCAAAATGC	NA	False	NA	9	True	AATAAA	-14	NA	91376666	91451007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450095_91450185_91450326
ES_00030921	chr2	+	2883	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480462	91502671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ES_00030922	chr2	+	2854	14	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	87.3500066894048	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_91480598_91482093_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ES_00030923	chr2	+	2866	14	FSM	ENSMUSG00000027247.17	ENSMUST00000090614.11	2866	14	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	93.668116113923	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91480598_91482108_91482169_91484390_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ES_00030924	chr2	+	3006	15	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	121.546833167554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	91480569	91502670	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_91480598_91481843_91482000_91482093_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ES_00030925	chr2	+	2225	3	FSM	ENSMUSG00000027247.17	ENSMUST00000149426.2	784	3	-97	-1344	-97	65	multi-exon	FALSE	canonical	3	352	junction_1	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGAGAGCTTTAGGGAG	1853	False	NA	NA	False	NA	NA	NA	91500178	91502736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91500620_91500810_91500915_91501056
ES_00030926	chr2	+	2573	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	2	474	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCTAAAGACCTTGGCA	3375	False	NA	NA	False	AATAAA	-42	NA	91541199	91552364	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_91541321_91542424_91543211_91550698
ES_00030928	chr2	+	2313	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	-5	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3437	False	NA	NA	False	NA	NA	NA	91541261	91551890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91541597_91542424_91543211_91550698
ES_00030929	chr2	+	2113	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3451	False	NA	NA	False	NA	NA	NA	91541275	91551890	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_91541411_91542424_91543211_91550698
ES_00030930	chr2	+	4933	18	FSM	ENSMUSG00000040506.17	ENSMUST00000111317.9	4929	18	-4	0	0	0	multi-exon	TRUE	canonical	3	16	junction_8	30.449799858434	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91560478	91749193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ES_00030932	chr2	+	5203	18	FSM	ENSMUSG00000040506.17	ENSMUST00000045705.14	5203	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_5	14.4832560525026	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCTCCTGCTTATTTCT	NA	False	NA	7	True	ATTAAA	-19	NA	91560569	91749194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ES_00030934	chr2	+	1470	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	-78	0	-78	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205572	92211562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ES_00030936	chr2	+	2654	8	FSM	ENSMUSG00000068735.15	ENSMUST00000090554.11	2654	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	50.0424309757148	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAATCTGCGTGGTGT	NA	False	NA	10	True	AAGAAA	-43	NA	93017928	93032094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_93018093_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ES_00030938	chr2	+	2840	8	NIC	ENSMUSG00000068735.15	novel	2703	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	62	junction_2	86.7591082085498	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAATCTGCGTGGTGT	NA	False	NA	10	True	AAGAAA	-43	NA	93017892	93032094	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_93018093_93027241_93027324_93027806_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ES_00030941	chr2	+	5267	7	NIC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	0	-699	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8426555195142	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGAGTTGTAGTTTTT	NA	False	NA	NA	False	TTTAAA	-43	NA	101508784	101531315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_101508966_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
ES_00030945	chr2	+	954	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	-48	13	-48	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4545	False	NA	12	True	AATAAA	-34	NA	102903971	102922976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ES_00030950	chr2	+	3720	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTATTTATTTATTT	NA	False	NA	14	True	NA	NA	NA	103858204	103887849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
ES_00030951	chr2	+	2791	11	NIC	ENSMUSG00000027180.13	novel	3720	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTATTTATTTATTT	NA	False	NA	14	True	NA	NA	NA	103858159	103887849	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
ES_00030954	chr2	+	502	4	Fusion	ENSMUSG00000068686.13_ENSMUSG00000032679.13	novel	434	4	NA	NA	0	0	multi-exon	FALSE	canonical	3	60	junction_1	77.288780269555	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCTGTATTAATTTAG	NA	False	NA	-48	True	NA	NA	NA	103900235	103944608	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_103900265_103909202_103909282_103941084_103941190_103944319
ES_00030955	chr2	+	1796	5	FSM	ENSMUSG00000032679.13	ENSMUST00000168176.8	1806	5	10	0	10	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAGATTATCTTGAC	NA	False	NA	NA	False	ATTAAA	-15	NA	103926155	103945694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ES_00030956	chr2	+	1681	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	10	0	10	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103926155	103945699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ES_00030957	chr2	+	1396	3	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	1	115	intron_retention	FALSE	canonical	3	58	junction_1	259.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGCTGTGTTAATGTCA	NA	False	NA	27	True	AAGAAA	-23	NA	104389537	104399292	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104389595_104390068_104390321_104398205
ES_00030961	chr2	+	1239	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	0	-703	0	0	multi-exon	FALSE	canonical	3	101	junction_1	238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAATGCCCCCTTCTGGTG	NA	False	NA	-88	True	NA	NA	NA	104389536	104399177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104389552_104390068_104390321_104398205
ES_00030962	chr2	+	1404	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	3	-7111	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	77	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	104389539	104391284	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104389830_104390068_104390321_104390422
ES_00030963	chr2	+	1516	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	3	162	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGGCTGGCCTTGGAC	NA	False	NA	74	True	NA	NA	NA	104389539	104399339	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
ES_00030964	chr2	+	1755	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	3	162	intron_retention	FALSE	canonical	3	251	junction_2	163	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGGCTGGCCTTGGAC	NA	False	NA	74	True	NA	NA	NA	104389539	104399339	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104390321_104398205_104398836_104398995
ES_00030965	chr2	+	1281	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	3	162	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGGCTGGCCTTGGAC	NA	False	NA	74	True	NA	NA	NA	104389539	104399339	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
ES_00030968	chr2	+	2598	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	-9	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCGGTATTTCATGGTGT	6900	False	NA	NA	False	AATAAA	-22	NA	104420867	104441751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104421048_104439215_104439318_104439435
ES_00030970	chr2	+	644	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6995	False	NA	4	True	ATTAAA	-16	NA	104420962	104439774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104421048_104439215
ES_00030982	chr2	+	4228	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109721197	109731348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ES_00030984	chr2	+	2093	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-23	0	-23	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCACCATTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	109848138	109875661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ES_00030985	chr2	+	840	3	FSM	ENSMUSG00000027160.17	ENSMUST00000126990.8	840	3	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_2	21	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAGCAACGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	109852317	109871608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_109852360_109862676_109862785_109870918
ES_00030986	chr2	+	3473	3	FSM	ENSMUSG00000027160.17	ENSMUST00000152930.2	3511	3	38	0	38	0	multi-exon	FALSE	canonical	3	458	junction_1	9.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTTGCATTTATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	109868409	109875194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_109871078_109871605_109871748_109874531
ES_00030990	chr2	+	1650	14	NNC	ENSMUSG00000027134.5	novel	2275	14	NA	NA	361	-32	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	19.0119862534606	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCAGAGGCCTACCCTATG	NA	False	NA	NA	False	NA	NA	NA	112070173	112077286	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_112070403_112071889_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
ES_00030992	chr2	+	7548	25	FSM	ENSMUSG00000027130.16	ENSMUST00000028549.14	6105	25	-1245	-198	-251	191	multi-exon	FALSE	canonical	3	33	junction_1	16.1464112799787	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTAAAAAAAGAAACAGTAAA	NA	False	NA	NA	False	NA	NA	NA	112095918	112193699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_112097438_112146585_112146631_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ES_00030993	chr2	+	2837	19	FSM	ENSMUSG00000027130.16	ENSMUST00000110987.9	3722	19	0	885	0	-885	multi-exon	FALSE	canonical	3	15	junction_1	20.5291121202171	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCTGGGTCACCACTTT	NA	False	NA	NA	False	NA	NA	NA	112097086	112185489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_112097438_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319
ES_00030994	chr2	+	6080	25	FSM	ENSMUSG00000027130.16	ENSMUST00000053666.8	6060	25	-20	0	-20	0	multi-exon	FALSE	canonical	3	47	junction_1	14.1194679432336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATAAGTTGTGCTGTAGT	NA	False	NA	NA	False	AATAAA	-20	NA	112114901	112193501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_112115151_112146585_112146631_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ES_00030995	chr2	+	4396	4	FSM	ENSMUSG00000027130.16	ENSMUST00000137896.2	4464	4	68	0	68	0	multi-exon	FALSE	canonical	3	102	junction_2	2.94392028877595	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGCTGTAGTTTCTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	112186607	112193508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_112187937_112188112_112188298_112188850_112188985_112190760
ES_00030998	chr2	+	896	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	49	-4720	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTATCTTCTGTTTTTCTT	409	False	NA	9	True	ATTAAA	-22	NA	112285390	112297787	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ES_00030999	chr2	+	4576	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	0	159	0	-159	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGGGAATCCTAACC	NA	False	NA	NA	False	NA	NA	NA	112323308	112464759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
ES_00031002	chr2	+	2637	12	NNC	ENSMUSG00000040282.14	novel	2770	11	NA	NA	0	-179	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	116.630234374488	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTAAGTTACCAGTTTG	NA	False	NA	8	True	ATTAAA	-17	NA	115412196	115609070	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_115412467_115434047_115434112_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
ES_00031009	chr2	+	3678	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	-10	0	-10	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428681	118472072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
ES_00031018	chr2	+	585	3	FSM	ENSMUSG00000027332.12	ENSMUST00000154104.2	668	3	83	0	83	0	multi-exon	FALSE	canonical	3	195	junction_2	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGAGTGTGCCACACAGG	NA	False	NA	NA	False	NA	NA	NA	118706996	118708381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118707451_118708141_118708247_118708355
ES_00031020	chr2	+	4594	7	FSM	ENSMUSG00000040007.9	ENSMUST00000036578.7	4594	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	7.79779171019306	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTTTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-32	NA	118731933	118755009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118732239_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752076_118752178_118752863
ES_00031024	chr2	+	8239	24	NIC	ENSMUSG00000027326.14	novel	7800	23	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	11.4505594583524	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCGTGGTAGCGCATGCC	7214	False	NA	59	True	TATAAA	-16	NA	118877602	118935982	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458
ES_00031025	chr2	+	2985	9	FSM	ENSMUSG00000027323.11	ENSMUST00000152327.8	2975	9	-10	0	0	0	multi-exon	FALSE	canonical	2	25	junction_7	266.546870878275	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTCCAGGCACCTC	NA	False	NA	NA	False	AAAACA	-41	NA	118943287	118967518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964867_118964990_118965529
ES_00031027	chr2	+	482	2	FSM	ENSMUSG00000027323.11	ENSMUST00000154683.2	482	2	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCCCAAAAAACCCATTGG	NA	False	NA	NA	False	NA	NA	NA	118961998	118964936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118962099_118964554
ES_00031029	chr2	+	681	1	FSM	ENSMUSG00000081572.4	ENSMUST00000122061.2	745	1	31	33	31	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACTTCTAAGTCTGAGTC	9888	False	NA	NA	False	NA	NA	NA	119018028	119018709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119018000_119018700
ES_00031033	chr2	+	2273	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067842	119079995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ES_00031034	chr2	+	2386	10	FSM	ENSMUSG00000027315.14	ENSMUST00000110817.3	2323	10	-76	13	0	0	multi-exon	FALSE	canonical	3	281	junction_4	16.649620912898	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067957	119079995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ES_00031035	chr2	+	3095	4	FSM	ENSMUSG00000034216.13	ENSMUST00000139367.8	3194	4	10	89	8	-89	multi-exon	FALSE	canonical	3	64	junction_3	5.71547606649408	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTATCTTATAATAT	6385	False	NA	NA	False	TTTAAA	-27	NA	119119230	119125879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399
ES_00031047	chr2	+	4150	19	FSM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	-174	13	13	0	multi-exon	FALSE	canonical	3	227	junction_12	19.4854329889133	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAATCAAAGCTTTGT	NA	False	NA	NA	False	AATAAA	-9	NA	119629820	119648572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119630365_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
ES_00031051	chr2	+	13931	24	FSM	ENSMUSG00000033943.16	ENSMUST00000110774.8	13931	24	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_1	56.5525668439122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGCAAAAAAACTGAC	NA	False	NA	NA	False	NA	NA	NA	119727708	119800062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119727828_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859_119757203_119762191_119762416_119762984_119763168_119763553_119763624_119765629_119766148_119769119_119769268_119771702_119772327_119776652_119776944_119777305_119778775_119781566_119781695_119783355_119783408_119788637_119788845_119790820_119790933_119791206_119791441_119792274_119792452_119794172
ES_00031059	chr2	+	1272	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	49.0736408087093	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857968	119863075	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862055_119862133_119862321_119862482_119862594
ES_00031061	chr2	+	1263	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857996	119863075	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
ES_00031065	chr2	+	1430	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAATTGAATGTTCC	NA	False	NA	NA	False	TTTAAA	-4	NA	120439863	120450387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
ES_00031067	chr2	+	2812	3	NIC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	46	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_1	139.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120439909	120452041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_120440027_120448353_120448463_120449455
ES_00031074	chr2	+	2603	11	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_1	16.3572613844739	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970909	120987159	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ES_00031075	chr2	+	2477	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970978	120987159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ES_00031076	chr2	+	2567	12	NNC	ENSMUSG00000027259.16	novel	2298	10	NA	NA	245	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	42.0699928395604	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120971246	120987159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_120971364_120971717_120971803_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ES_00031078	chr2	+	2406	17	NIC	ENSMUSG00000027263.13	novel	2915	19	NA	NA	0	-28	combination_of_known_junctions	FALSE	canonical	3	61	junction_3	56.955266163455	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGTAAACAGTGGGTTG	NA	False	NA	NA	False	NA	NA	NA	121001689	121027502	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_121001953_121004038_121004168_121005820_121005944_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ES_00031080	chr2	+	2934	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	-19	0	-19	0	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001670	121029250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
ES_00031081	chr2	+	4212	18	FSM	ENSMUSG00000027263.13	ENSMUST00000039541.12	4206	18	-6	0	0	0	multi-exon	FALSE	canonical	3	111	junction_12	42.7635326321784	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001689	121029251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ES_00031083	chr2	+	2887	19	FSM	ENSMUSG00000027263.13	ENSMUST00000144076.8	2887	19	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_18	58.617614173199	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001720	121029250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
ES_00031088	chr2	+	1620	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	1635	False	NA	32	True	AGTAAA	-20	NA	121189090	121194218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ES_00031091	chr2	+	3272	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	-167	0	6	0	multi-exon	FALSE	canonical	3	5931	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGAGCATTCTGGGT	NA	False	NA	3	True	NA	NA	NA	121279681	121283486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121279923_121280455
ES_00031093	chr2	+	540	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	-15	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	2874	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121279923_121280455_121280565_121281178
ES_00031094	chr2	+	1349	3	FSM	ENSMUSG00000027245.12	ENSMUST00000125849.8	1349	3	0	0	0	0	multi-exon	FALSE	canonical	3	4276	junction_1	147	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	12	True	TATAAA	-20	NA	121287173	121288917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121288183_121288472_121288525_121288629
ES_00031096	chr2	+	602	1	FSM	ENSMUSG00000081967.2	ENSMUST00000121934.2	386	1	-99	-117	-99	117	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTAAAAAAAAAAAAAGGA	5522	False	NA	33	True	AATAAA	-37	NA	121311510	121312112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121311500_121312100
ES_00031099	chr2	+	3155	9	FSM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	5.85101486923423	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAACAACCACAACAA	NA	False	NA	NA	False	NA	NA	NA	121337235	121363846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766
ES_00031100	chr2	+	3959	11	NNC	ENSMUSG00000060227.16	novel	4215	10	NA	NA	-129	-3	at_least_one_novel_splicesite	TRUE	non_canonical	3	134	junction_10	36.99513481527	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATCACTTTCTGGGTT	NA	False	NA	-36	True	TTTAAA	-2	NA	121697321	121766344	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958_121765678_121765705
ES_00031101	chr2	+	4049	9	FSM	ENSMUSG00000060227.16	ENSMUST00000110586.10	4032	9	-17	0	-17	0	multi-exon	FALSE	canonical	3	90	junction_8	46.1246612453685	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	121697433	121766686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958
ES_00031102	chr2	+	4232	10	FSM	ENSMUSG00000060227.16	ENSMUST00000078752.10	4215	10	-17	0	-17	0	multi-exon	FALSE	canonical	3	136	junction_8	32.2490309931942	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTAGGGTTGTTTACTGTA	NA	False	NA	NA	False	NA	NA	NA	121697433	121766701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958
ES_00031103	chr2	+	2696	11	NNC	ENSMUSG00000060227.16	novel	4215	10	NA	NA	-17	68949	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_10	66.371756041256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTACTTACATATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	121697433	121835650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958_121765019_121835503
ES_00031108	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	121978166	121983564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ES_00031110	chr2	+	1899	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1959	False	NA	NA	False	AATAAA	-15	NA	122016766	122036878	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
ES_00031111	chr2	+	1984	5	FSM	ENSMUSG00000027229.6	ENSMUST00000149861.2	448	5	-100	-1436	-100	0	multi-exon	FALSE	canonical	3	28	junction_1	43.0486643230658	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	2047	False	NA	NA	False	AATAAA	-15	NA	122016854	122036878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ES_00031124	chr2	+	1950	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	0	0	0	0	multi-exon	TRUE	canonical	3	2160	junction_3	102.069780052668	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGTATATGTTTTAAGG	NA	False	NA	117	True	ATTAAA	-18	NA	125089401	125100528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ES_00031127	chr2	+	1816	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	112	0	-24	0	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTGCTCTTGAATG	NA	False	NA	8	True	ATTAAA	-15	NA	125708138	125825507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
ES_00031129	chr2	+	1276	4	FSM	ENSMUSG00000023330.13	ENSMUST00000110437.4	1276	4	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	13.6381816969859	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCCCTTACCTTTCGACT	9679	False	NA	28	True	ATTAAA	-26	NA	125996460	126007199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_125996781_126000329_126000474_126001689_126001949_126006646
ES_00031130	chr2	+	2918	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGAGGCTTCGCTGTCT	NA	False	NA	16	True	AATAAA	-16	NA	126394326	126430163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
ES_00031136	chr2	+	1177	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	-17	0	-15	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2194	False	NA	NA	False	AATAAA	-20	NA	126912569	126939004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ES_00031138	chr2	+	1085	6	NNC	ENSMUSG00000001999.16	novel	772	7	NA	NA	1	453	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	79.0103790650317	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAGTATTTTGCATGTGA	2210	False	NA	NA	False	NA	NA	NA	126912585	126932722	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_126912646_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
ES_00031142	chr2	+	5181	3	NIC	ENSMUSG00000034850.16	novel	4811	4	NA	NA	-24	0	intron_retention	FALSE	canonical	3	85	junction_1	28.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTTCCGGTCTACTCT	2371	False	NA	10	True	AATAAA	-15	NA	127089864	127103027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_127090730_127097924_127098090_127098876
ES_00031148	chr2	+	2664	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	61.0786266991636	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4968	False	NA	14	True	AATAAA	-25	NA	127267085	127278012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273199_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ES_00031149	chr2	+	2628	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ES_00031150	chr2	+	4488	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	-7	0	-7	0	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	3960	False	NA	7	True	AATAAA	-18	NA	127429134	127448749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ES_00031151	chr2	+	1447	5	FSM	ENSMUSG00000027374.13	ENSMUST00000134101.8	812	5	0	-635	0	635	multi-exon	FALSE	canonical	3	1110	junction_4	81.6160982894919	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACCTGAGACTTAGTAA	4164	False	NA	NA	False	NA	NA	NA	127429338	127438612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583
ES_00031153	chr2	+	4937	5	FSM	ENSMUSG00000027374.13	ENSMUST00000145271.2	718	5	-1069	-3150	-1069	176	multi-exon	FALSE	canonical	3	1290	junction_1	136.582163916084	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAGCCTAGCTCGTCAG	NA	False	NA	NA	False	NA	NA	NA	127440676	127448925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ES_00031154	chr2	+	2781	19	NIC	ENSMUSG00000027380.11	novel	531	6	NA	NA	-86	8	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	2.77999911182151	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGGCGGAAATGAATTTC	NA	False	NA	NA	False	AATAAA	-26	NA	127680709	127965801	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_127680903_127691112_127691210_127709202_127709287_127713181_127713269_127714029_127714129_127719663_127719779_127720676_127720764_127722345_127722419_127726325_127726459_127753349_127753385_127814451_127814569_127820592_127820747_127851996_127852087_127876732_127876843_127886263_127886376_127917766_127917855_127928278_127928350_127947596_127947699_127964867
ES_00031156	chr2	+	4961	5	NIC	ENSMUSG00000027381.17	novel	974	4	NA	NA	-69	0	intron_retention	FALSE	canonical	3	24	junction_2	4.32290411644765	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTGTTCGATGTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	127969425	128004467	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_127969733_127970539_127970677_127970844_127970935_127989004_127989115_128000150
ES_00031162	chr2	+	213	1	Intergenic	novelGene_2366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAGACATTTAATTGG	NA	False	NA	NA	False	NA	NA	NA	128861298	128861511	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_128861300_128861500
ES_00031176	chr2	+	3992	8	FSM	ENSMUSG00000037902.19	ENSMUST00000103202.10	3982	8	-10	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	10.6215030259663	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129435114	129474148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ES_00031177	chr2	+	3644	8	FSM	ENSMUSG00000037902.19	ENSMUST00000049262.14	3644	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	35.4193536395697	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129435474	129474148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469918_129471846
ES_00031178	chr2	+	876	6	FSM	ENSMUSG00000037902.19	ENSMUST00000160276.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	39.9729908813439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGGCTGTGGTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	129435532	129472104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ES_00031182	chr2	+	2976	7	FSM	ENSMUSG00000027405.17	ENSMUST00000161543.2	2960	7	-16	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	225.275695291101	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAAAGCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	130116349	130120903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119891_130120075
ES_00031183	chr2	+	3641	5	FSM	ENSMUSG00000027405.17	ENSMUST00000150745.9	3627	5	-14	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	249.795291188605	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTATTTTGTTTATT	NA	False	NA	30	True	AATAAA	-19	NA	130116349	130121232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130118095_130118355
ES_00031189	chr2	+	1209	4	FSM	ENSMUSG00000027405.17	ENSMUST00000153353.9	1204	4	0	-5	0	0	multi-exon	FALSE	canonical	3	1876	junction_1	235.799820940465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTATTTTGTTTATT	NA	False	NA	30	True	AATAAA	-19	NA	130119008	130121232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130119545_130119768_130119891_130120075_130120211_130120816
ES_00031190	chr2	+	946	5	FSM	ENSMUSG00000027405.17	ENSMUST00000028890.15	946	5	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	920.852152899693	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAACCCCAATAAAAACA	NA	False	NA	-4	True	NA	NA	NA	130119076	130121198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ES_00031191	chr2	+	1028	6	FSM	ENSMUSG00000027405.17	ENSMUST00000150401.8	1005	6	-23	0	-23	0	multi-exon	FALSE	canonical	3	83	junction_5	967.657501391892	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAACCCCAATAAAAACAC	NA	False	NA	-3	True	NA	NA	NA	130119114	130121199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
ES_00031192	chr2	+	793	3	FSM	ENSMUSG00000027405.17	ENSMUST00000145335.3	779	3	-14	0	-14	0	multi-exon	FALSE	canonical	3	2327	junction_2	43.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCCCAATAAAAACACA	NA	False	NA	-2	True	NA	NA	NA	130119616	130121200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130119891_130120075_130120211_130120816
ES_00031193	chr2	+	3161	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTAGGTTGTGTTCAGG	NA	False	NA	NA	False	NA	NA	NA	130266284	130286189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
ES_00031200	chr2	+	1061	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	543	junction_1	21	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	381	False	NA	14	True	NA	NA	NA	130405657	130407314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130405911_130406000_130406352_130406857
ES_00031206	chr2	+	3058	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	-56	2	-47	0	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATCTGTTTGTTATGCA	NA	False	NA	NA	False	AATAAA	-16	NA	131028821	131040415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ES_00031208	chr2	+	1373	2	FSM	ENSMUSG00000068264.12	ENSMUST00000134086.2	868	2	4	-509	4	0	multi-exon	FALSE	canonical	3	35	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTTGTCCTCTTTTTGT	NA	False	NA	8	True	ATTAAA	-14	NA	131052293	131055431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131052602_131054366
ES_00031210	chr2	+	1537	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	-16	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	10	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	11	True	ATTAAA	-17	NA	131052343	131055434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131052602_131053182_131053394_131054366
ES_00031214	chr2	+	4271	7	FSM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	-5	0	0	0	multi-exon	FALSE	canonical	3	323	junction_2	97.0093065409477	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTGCTTGCATGTA	864	False	NA	5	True	AATAAA	-19	NA	131104414	131141108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131104736_131115830_131116184_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
ES_00031215	chr2	+	1398	7	FSM	ENSMUSG00000037514.19	ENSMUST00000184105.9	1398	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	197.100651106653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACCCCATCCCACCCCC	894	False	NA	NA	False	GATAAA	-20	NA	131104444	131138408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131104736_131115830_131116041_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
ES_00031216	chr2	+	3622	5	FSM	ENSMUSG00000037514.19	ENSMUST00000184932.9	3622	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	240.508315864546	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTGTTTGCTTGCATG	937	False	NA	3	True	AATAAA	-17	NA	131104487	131141106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131104736_131115830_131116041_131129393_131129518_131135318_131135445_131138192
ES_00031217	chr2	+	5366	4	FSM	ENSMUSG00000086329.2_ENSMUSG00000037514.19	ENSMUST00000145904.2	558	4	0	-4808	0	1304	multi-exon	FALSE	canonical	3	31	junction_2	262.90725022757	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGCCAAGAAGGGAGATGA	1165	False	NA	NA	False	NA	NA	NA	131104715	131143059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131104736_131115830_131116184_131135318_131135445_131138192
ES_00031218	chr2	+	718	3	ISM	ENSMUSG00000037514.19	ENSMUST00000145904.2	558	4	11296	-361	15	1	3prime_fragment	FALSE	canonical	3	31	junction_1	260	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGAGGTCATCTTTC	NA	False	NA	14	True	NA	NA	NA	131116011	131138612	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_131116184_131135318_131135445_131138192
ES_00031221	chr2	+	2316	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	-177	31	2	0	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGATAATAAAAGAAGTGAC	NA	False	NA	-11	True	NA	NA	NA	131333685	131367061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
ES_00031222	chr2	+	2234	8	NNC	ENSMUSG00000027333.19	novel	471	4	NA	NA	1386	-3	intron_retention	FALSE	canonical	3	6	junction_1	58.1177551991451	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCACGCTCCTTTGCTTCT	NA	False	NA	12	True	AATAAA	-13	NA	131352257	131367084	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_131352424_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
ES_00031228	chr2	+	1235	4	FSM	ENSMUSG00000058793.15	ENSMUST00000110158.8	1247	4	12	0	12	0	multi-exon	FALSE	canonical	3	261	junction_1	90.9322091817122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTCTGAGCCCTTTCTT	5256	False	NA	NA	False	AATAAA	-16	NA	132105079	132138113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450
ES_00031229	chr2	+	8313	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_13	116.445024741215	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	5259	False	NA	NA	False	AATAAA	-17	NA	132105082	132153970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147715_132147782
ES_00031232	chr2	+	3663	13	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3427	2278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.581213686209	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCCTTGTCAGGAGTCC	NA	False	NA	5	True	AATAAA	-10	NA	132131285	132149526	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
ES_00031233	chr2	+	1166	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	-90	0	-90	0	multi-exon	FALSE	canonical	3	37	junction_1	20.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528760	132592975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_132528902_132533869_132534052_132592132
ES_00031236	chr2	+	1946	7	FSM	ENSMUSG00000027357.17	ENSMUST00000028835.13	1924	7	-22	0	-22	0	multi-exon	FALSE	canonical	3	562	junction_2	81.1632442810305	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGTTGTCCTGTGGTG	1600	False	NA	13	True	AATAAA	-28	NA	132688563	132708705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_132689046_132691785_132691924_132696812_132696943_132703128_132703215_132704254_132704324_132706009_132706102_132707756
ES_00031241	chr2	+	423	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2425	0	at_least_one_novel_splicesite	FALSE	canonical	3	337	junction_4	128.141523324799	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488401	135493983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493442_135493766
ES_00031242	chr2	+	593	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2425	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	272.981024981591	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488401	135493983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
ES_00031243	chr2	+	389	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2425	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	189.688048003968	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488401	135493983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_135488469_135490846_135490892_135493417_135493478_135493766
ES_00031244	chr2	+	2626	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	-2214	0	-2214	0	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488612	135493983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
ES_00031246	chr2	+	5475	39	NNC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	-33	8	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_19	24.1549275783594	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCAGAGTATTTGCTTCC	NA	False	NA	10	True	AATAAA	-22	NA	135501440	135856521	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_135501651_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803635_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
ES_00031255	chr2	+	300	1	FSM	ENSMUSG00000083215.4	ENSMUST00000119377.2	930	1	173	457	173	-457	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAGAAAAAGAAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	142419020	142419320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_142419000_142419300
ES_00031260	chr2	+	2748	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	327	-716	327	5	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTATTTATAGGGTGATT	NA	False	NA	NA	False	AATAAA	-25	NA	144113187	144123152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ES_00031264	chr2	+	934	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	-9	-232	-9	232	multi-exon	FALSE	canonical	3	459	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCATTATTATTATTAGT	NA	False	NA	19	True	AATAAA	-20	NA	144210906	144215873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144211078_144215110
ES_00031266	chr2	+	4428	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	-25	0	-25	0	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTTTCTGGTATTAT	572	False	NA	8	True	GATAAA	-24	NA	144369612	144383915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
ES_00031269	chr2	+	2760	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398176	144432669	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ES_00031271	chr2	+	694	4	FSM	ENSMUSG00000027429.17	ENSMUST00000149697.3	694	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	278.696968049529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTTGTCATGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	144398253	144406572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144398568_144401126_144401362_144404051_144404110_144406485
ES_00031286	chr2	+	956	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	0	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514545	148517947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_148514756_148517201
ES_00031288	chr2	+	1986	4	FSM	ENSMUSG00000074736.11	ENSMUST00000109935.8	2050	4	15	49	15	-49	multi-exon	FALSE	canonical	1	4	junction_1	14.290634073484	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTACGACTTTTCT	NA	False	NA	NA	False	NA	NA	NA	149672722	149846263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_149672846_149741337_149741896_149772824_149772963_149845096
ES_00031290	chr2	+	3376	5	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	18	3516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.0746772020624	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTGTGTGTGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	150023692	150038715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150035207_150037056
ES_00031299	chr2	+	1087	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
ES_00031301	chr2	+	1445	10	FSM	ENSMUSG00000027455.17	ENSMUST00000089140.13	1486	10	-7	48	-7	0	multi-exon	FALSE	canonical	1	251	junction_3	435.093348860014	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACTTTAAAGAAAAAAAAATA	NA	False	NA	-24	True	NA	NA	NA	151336094	151353182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344374_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ES_00031303	chr2	+	1476	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	-3	-109	0	0	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGTACACATAATC	NA	False	NA	128	True	NA	NA	NA	151336209	151353334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ES_00031306	chr2	+	930	2	FSM	ENSMUSG00000027455.17	ENSMUST00000139229.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACTTTAAAGAAAAAAAAATA	NA	False	NA	-24	True	NA	NA	NA	151351019	151353182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151351594_151352826
ES_00031312	chr2	+	1424	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3586	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.0987313559674	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151418127	151431925	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_151418234_151424610_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ES_00031314	chr2	+	2665	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	-75	0	-75	0	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAACTACTTAAAC	NA	False	NA	-18	True	NA	NA	NA	151841709	151851142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ES_00031318	chr2	+	2556	2	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	52398	58797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGATGCTAAAATC	NA	False	NA	NA	False	NA	NA	NA	152121230	152182569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_152123761_152182543
ES_00031321	chr2	+	1183	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-133	35305	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	152195401	152231791	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_152196550_152231756
ES_00031322	chr2	+	402	1	FSM	ENSMUSG00000068062.4	ENSMUST00000089083.3	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCAGGAAGACCATTTA	NA	False	NA	NA	False	NA	NA	NA	152216667	152217069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152216700_152217100
ES_00031323	chr2	+	2782	3	FSM	ENSMUSG00000019188.17	ENSMUST00000148156.2	2769	3	-13	0	12	0	multi-exon	FALSE	canonical	3	150	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGAGGTGTGTTTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	152511392	152525361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152511685_152519461_152519561_152522970
ES_00031324	chr2	+	1089	4	FSM	ENSMUSG00000019188.17	ENSMUST00000109825.8	1063	4	-10	-16	-8	16	multi-exon	FALSE	canonical	3	150	junction_2	4.78423336480244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTATTTTTTTAACGT	NA	False	NA	NA	False	AATAAA	-32	NA	152511397	152528637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017
ES_00031326	chr2	+	1758	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	-15	0	12	0	multi-exon	FALSE	canonical	3	19	junction_11	48.170054667466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	False	NA	21	True	ATTAAA	-35	NA	152511392	152546956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
ES_00031328	chr2	+	573	2	Genic_Genomic	ENSMUSG00000042814.9	novel	912	1	NA	NA	131	-96	multi-exon	TRUE	canonical	3	34	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCGTTGTATCTCTGTG	NA	False	NA	5	True	TATAAA	-1	NA	152529085	152529770	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_152529294_152529405
ES_00031332	chr2	+	4185	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	-24	0	-24	0	multi-exon	FALSE	canonical	3	176	junction_2	164.31464036434	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2670	False	NA	13	True	NA	NA	NA	152689859	152737241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ES_00031333	chr2	+	4389	18	FSM	ENSMUSG00000027469.17	ENSMUST00000164120.8	4365	18	-24	0	-24	0	multi-exon	FALSE	canonical	3	159	junction_1	220.211647171926	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2670	False	NA	13	True	NA	NA	NA	152689859	152737241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152690218_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ES_00031334	chr2	+	3494	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	-11	0	3	0	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2697	False	NA	NA	False	NA	NA	NA	152689886	152736574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ES_00031335	chr2	+	4325	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	0	-671	0	4	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2725	False	NA	17	True	NA	NA	NA	152689914	152737245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ES_00031336	chr2	+	4137	18	NIC	ENSMUSG00000027469.17	novel	4365	18	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	164	junction_2	166.868304785146	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2734	False	NA	13	True	NA	NA	NA	152689923	152737241	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_152690030_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ES_00031337	chr2	+	1999	13	NNC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	-648	-6	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5877188310572	200	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAAGGGTCAGCTTCT	NA	False	NA	11	True	AATAAA	-21	NA	152949739	152993353	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_152949942_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ES_00031343	chr2	+	5660	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	10	-70	2	70	multi-exon	FALSE	canonical	3	95	junction_4	7.06320670013903	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGCCCCGCCCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	153083462	153112237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
ES_00031347	chr2	+	6563	12	NNC	ENSMUSG00000042548.15	novel	6981	12	NA	NA	405	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	51.8797082897678	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCCTTGTCATCTGT	NA	False	NA	7	True	AATAAA	-16	NA	153188169	153245927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_153188311_153194108_153194191_153198985_153199099_153233448_153233570_153233644_153233743_153234760_153234855_153235268_153235422_153235543_153235708_153235801_153235899_153238651_153238758_153239295_153239921_153241158
ES_00031351	chr2	+	4322	24	FSM	ENSMUSG00000027478.16	ENSMUST00000056495.14	4318	24	-4	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	26.7017412684545	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491369	153529646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ES_00031352	chr2	+	4357	24	FSM	ENSMUSG00000027478.16	ENSMUST00000109774.9	4320	24	-41	4	-38	0	multi-exon	FALSE	canonical	3	28	junction_1	28.4266708280574	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491331	153529646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ES_00031353	chr2	+	4025	21	FSM	ENSMUSG00000027478.16	ENSMUST00000109772.8	4015	21	-10	0	-6	0	multi-exon	FALSE	canonical	3	33	junction_15	23.6207535866238	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491363	153529650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ES_00031354	chr2	+	3630	23	FSM	ENSMUSG00000027478.16	ENSMUST00000109771.2	3630	23	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	22.8903242036621	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTGAGCAGTGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	153491536	153529236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ES_00031359	chr2	+	6201	11	FSM	ENSMUSG00000038533.16	ENSMUST00000109725.8	6080	11	-121	0	-121	0	multi-exon	FALSE	canonical	3	122	junction_9	126.860553364708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACCAGACCTGGGGAA	5182	False	NA	37	True	AATAAA	-27	NA	154278279	154381276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373144_154373333_154376803
ES_00031365	chr2	+	560	3	FSM	ENSMUSG00000038533.16	ENSMUST00000154487.2	560	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	170	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACAGTCTACCACACACA	NA	False	NA	12	True	AATAAA	-17	NA	154365903	154373519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154366020_154370756_154370826_154373144
ES_00031370	chr2	+	1724	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	-15	0	-15	0	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633000	154709165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ES_00031372	chr2	+	1773	9	FSM	ENSMUSG00000027593.16	ENSMUST00000116389.9	1759	9	-14	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	53.4051437129421	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633015	154709181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ES_00031373	chr2	+	1802	10	FSM	ENSMUSG00000027593.16	ENSMUST00000029120.14	1802	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	48.6369772452561	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154633052	154709164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ES_00031374	chr2	+	1771	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	-24	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633052	154709181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ES_00031376	chr2	+	5309	26	FSM	ENSMUSG00000027598.17	ENSMUST00000109685.8	5309	26	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	35.1837689851443	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTTGCCTTTTCGTCTG	NA	False	NA	55	True	AATAAA	-15	NA	154975478	155068773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154975506_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
ES_00031377	chr2	+	690	4	FSM	ENSMUSG00000047459.15	ENSMUST00000054912.15	677	4	-13	0	-13	0	multi-exon	FALSE	canonical	3	38	junction_1	797.62021037584	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTGTGTTGTGTCTTTA	NA	False	NA	14	True	AGTAAA	-16	NA	155078439	155092192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155078538_155084654_155084727_155089690_155089859_155091840
ES_00031388	chr2	+	1312	8	FSM	ENSMUSG00000038241.17	ENSMUST00000109618.2	1254	8	-54	-4	-18	4	multi-exon	FALSE	canonical	3	36	junction_1	9.61291648072041	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTAACTCATTCATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	155798459	155809718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477
ES_00031391	chr2	+	6361	15	FSM	ENSMUSG00000038241.17	ENSMUST00000148191.2	6361	15	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	24.1023540217082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGGCTGCTGTCTCTG	NA	False	NA	12	True	AATAAA	-19	NA	155818308	155840820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ES_00031394	chr2	+	1189	12	NIC	ENSMUSG00000038180.12	novel	747	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.06486846443059	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907661	155911421	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_155907806_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
ES_00031396	chr2	+	400	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	-21	0	-14	0	multi-exon	FALSE	canonical	3	37	junction_1	474	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6531	False	NA	14	True	AATAAA	-19	NA	155986138	155987714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155986201_155986364_155986510_155987521
ES_00031397	chr2	+	550	2	FSM	ENSMUSG00000067847.14	ENSMUST00000109597.10	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	985	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6545	False	NA	14	True	AATAAA	-19	NA	155986152	155987714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155986510_155987521
ES_00031402	chr2	+	5834	21	NIC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_12	20.7663188841932	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7853	False	NA	13	True	AATAAA	-28	NA	156263040	156385134	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ES_00031403	chr2	+	3896	22	NIC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	-4	865	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	39.9894543921899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACCTGACTGTGATTGAT	7812	False	NA	30	True	AATAAA	-40	NA	156262999	156382771	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352676_156352802_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ES_00031404	chr2	+	5811	22	NNC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	35.2440149467844	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGGACTCCCTCAGCC	7844	False	NA	11	True	AATAAA	-26	NA	156263031	156385132	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729_156382318_156382347
ES_00031406	chr2	+	2774	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389495	156410076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
ES_00031409	chr2	+	1595	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTAGAACCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	156562964	156605044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ES_00031410	chr2	+	3988	7	FSM	ENSMUSG00000061689.16	ENSMUST00000099145.6	3402	7	-586	0	-125	0	multi-exon	FALSE	canonical	3	22	junction_1	125.628309796089	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGCCTCATGGTGTTATT	NA	False	NA	7	True	NA	NA	NA	156562825	156606283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156564023_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ES_00031412	chr2	+	4084	5	FSM	ENSMUSG00000061689.16	ENSMUST00000127944.9	4083	5	-1	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	85.3591676388658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACAGCGTTTCTCACCC	NA	False	NA	11	True	ATTAAA	-14	NA	156562964	156604875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156563008_156587754_156591277_156602770_156602863_156603692_156603849_156604604
ES_00031413	chr2	+	3023	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9334	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGCCTCATGGTGTTATT	NA	False	NA	7	True	NA	NA	NA	156572745	156606283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ES_00031414	chr2	+	2900	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156681926	156697490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156682159_156686075_156686302_156695048
ES_00031415	chr2	+	2690	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
ES_00031416	chr2	+	2793	3	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-56	0	intron_retention	FALSE	canonical	3	38	junction_1	89.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682885	156697490	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_156683011_156686075_156686302_156695048
ES_00031422	chr2	+	2756	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	0	0	0	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157120978	157168239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ES_00031423	chr2	+	2577	17	FSM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	0	-263	0	0	multi-exon	FALSE	canonical	3	22	junction_1	580.610235953303	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157121345	157168239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157121444_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ES_00031424	chr2	+	688	4	FSM	ENSMUSG00000027642.16	ENSMUST00000150349.8	670	4	-18	0	-18	0	multi-exon	FALSE	canonical	2	12	junction_1	1133.25578166037	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTTGTCGCTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	157121470	157132631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157121694_157125503_157125698_157131447_157131544_157132456
ES_00031426	chr2	+	1943	17	FSM	ENSMUSG00000027642.16	ENSMUST00000126248.8	1944	17	1	0	1	0	multi-exon	FALSE	canonical	3	59	junction_15	739.834966288935	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAGACCCTGAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	157125503	157167655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
ES_00031427	chr2	+	1107	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	136	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157209561_157220968_157221175_157237829
ES_00031429	chr2	+	4024	14	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2079	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	38.5845724450749	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157262442	157313755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_157262723_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ES_00031430	chr2	+	3993	15	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2228	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	44.3039133112852	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	False	NA	10	True	ATTAAA	-16	NA	157262591	157313758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_157262723_157263520_157263636_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ES_00031431	chr2	+	3949	13	NIC	ENSMUSG00000027646.16	novel	3887	15	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	40.2881978858435	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	False	NA	10	True	ATTAAA	-16	NA	157266055	157313758	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_157266335_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ES_00031432	chr2	+	4147	14	FSM	ENSMUSG00000027646.16	ENSMUST00000029175.14	3906	14	-268	27	-104	0	multi-exon	FALSE	canonical	3	53	junction_1	27.1024791983727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157265931	157313755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157266335_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ES_00031433	chr2	+	3986	15	NIC	ENSMUSG00000027646.16	novel	3887	15	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	47.6961043204467	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	False	NA	10	True	ATTAAA	-16	NA	157266203	157313758	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_157266335_157266747_157266856_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ES_00031440	chr2	+	4433	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	-21	92	-21	-92	multi-exon	FALSE	canonical	3	106	junction_3	28.7807806241133	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGCCATCTCTCCAGCC	NA	False	NA	NA	False	NA	NA	NA	157870395	157920035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
ES_00031441	chr2	+	4164	6	FSM	ENSMUSG00000027651.17	ENSMUST00000156552.8	4179	6	0	15	0	-15	multi-exon	FALSE	canonical	3	10	junction_1	66.332495807108	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAGTAAACAAGATCTCC	NA	False	NA	NA	False	AATAAA	-21	NA	157870611	157920112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157870966_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
ES_00031446	chr2	+	8384	30	FSM	ENSMUSG00000027652.16	ENSMUST00000046274.12	8366	30	-18	0	-13	0	multi-exon	FALSE	canonical	3	25	junction_15	22.7822239150626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTGTGCTTTTGGTT	NA	False	NA	29	True	ATTAAA	-26	NA	158251754	158341173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_158252024_158262733_158262950_158268084_158268288_158272336_158272501_158274653_158274841_158277377_158277510_158278409_158278589_158278922_158279072_158279179_158279397_158282689_158282892_158285157_158285326_158285746_158285862_158286492_158286641_158288048_158288114_158290239_158290370_158292108_158292231_158296043_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
ES_00031454	chr2	+	3328	2	FSM	ENSMUSG00000027654.3	ENSMUST00000151801.2	3328	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	8943	False	NA	8	True	AATAAA	-16	NA	158623327	158628557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_158625178_158627079
ES_00031459	chr2	+	5181	33	NIC	ENSMUSG00000016933.18	novel	5107	32	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	165	junction_14	23.8978947817585	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTAACTTGTTTGTT	NA	False	NA	16	True	AATAAA	-17	NA	160573205	160605206	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_160573265_160573637_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
ES_00031460	chr2	+	5431	31	ISM	ENSMUSG00000016933.18	ENSMUST00000103115.8	4435	34	-17	12477	-7	-3	intron_retention	FALSE	canonical	3	165	junction_14	21.8658790508561	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTTTTAACTTGTTT	NA	False	NA	13	True	AATAAA	-14	NA	160573212	160605203	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_160573265_160573637_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479
ES_00031470	chr2	+	930	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-43	2478	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	4.02768199119819	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	162232689	162238343	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162233118_162233218_162233320_162236359_162236484_162238066
ES_00031472	chr2	+	2897	5	FSM	ENSMUSG00000016921.15	ENSMUST00000193611.6	2897	5	0	0	0	0	multi-exon	FALSE	canonical	3	867	junction_4	48.9304353138208	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGATTGCCTTATTGAA	NA	False	NA	14	True	AATAAA	-12	NA	162773447	162777128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_162773698_162773913_162775471_162775573_162775783_162776147_162776232_162776331
ES_00031474	chr2	+	1666	7	FSM	ENSMUSG00000016921.15	ENSMUST00000017065.15	1666	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	407.538443994347	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTAAAGTATTGCA	NA	False	NA	NA	False	NA	NA	NA	162773481	162776946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_162773698_162773913_162774063_162774734_162775003_162775345_162775471_162775573_162775783_162776147_162776232_162776331
ES_00031478	chr2	+	2220	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859424	162888061	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ES_00031488	chr2	+	1056	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	-24	4	-11	-2	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGCTTATGATCTTTT	8579	False	NA	6	True	AATAAA	-16	NA	163500294	163568070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
ES_00031493	chr2	+	694	3	FSM	ENSMUSG00000018209.16	ENSMUST00000137866.2	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_2	9	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTTTCCTGTTTTGT	NA	False	NA	NA	False	TATAAA	-16	NA	163941639	163960289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_163941746_163942329_163942517_163959888
ES_00031498	chr2	+	429	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164404725_164407711_164407859_164410254
ES_00031504	chr2	+	1825	3	FSM	ENSMUSG00000050373.14	ENSMUST00000172577.8	1825	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	7.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTGCTTTGCCTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	164627910	164634972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164628245_164628617_164628769_164633632
ES_00031508	chr2	+	1819	15	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	906	1448	0	-435	3prime_fragment	FALSE	canonical	3	800	junction_1	78.7051135439063	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ES_00031510	chr2	+	684	7	FSM	ENSMUSG00000017760.17	ENSMUST00000152721.2	684	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	361.061706022053	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATGACAACAAAGACCCAG	NA	False	NA	NA	False	NA	NA	NA	164675777	164678397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164675913_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346
ES_00031511	chr2	+	2056	13	NIC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	2	-435	intron_retention	FALSE	canonical	3	937	junction_9	56.2506790082474	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675779	164681504	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ES_00031512	chr2	+	611	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCACGCAAAGAAAATCT	5896	False	NA	44	True	NA	NA	NA	164721223	164725119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164721410_164724694
ES_00031513	chr2	+	5779	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	0	1	0	-1	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGTGGCCACAGACATGA	5949	False	NA	8	True	AATAAA	-15	NA	164721276	164736373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
ES_00031520	chr2	+	5781	23	FSM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	-24	0	-24	0	multi-exon	FALSE	canonical	3	143	junction_19	38.1274504699546	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCCACTCATCATTTTA	NA	False	NA	16	True	ATTAAA	-22	NA	165834531	165913390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
ES_00031524	chr2	+	8770	39	FSM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_4	19.7687636593819	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTCCCAGTGTCATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	166647507	166739972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_166647756_166668846_166668878_166669461_166669586_166676390_166676538_166677532_166677713_166678121_166678378_166684604_166684674_166687369_166687522_166690786_166690918_166692962_166693198_166693874_166693975_166695174_166695315_166696824_166696934_166698326_166698511_166701182_166701295_166701705_166701912_166702233_166702319_166702444_166702617_166703503_166703656_166705476_166705606_166706612_166706772_166707599_166707748_166708831_166708932_166709065_166709107_166709207_166709378_166710811_166710964_166712129_166712303_166713378_166713540_166715495_166715627_166715782_166715913_166718412_166718549_166720190_166720330_166720437_166720493_166723091_166723207_166727698_166727830_166732188_166732358_166733686_166733826_166735420_166735539_166736531
ES_00031532	chr2	+	659	4	FSM	ENSMUSG00000074578.15	ENSMUST00000143587.3	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.8351063543137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905138	166907782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353
ES_00031544	chr2	+	3399	3	FSM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTGTTTGAAATTACA	NA	False	NA	NA	False	AATAAA	-22	NA	167922923	167943123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_167923280_167929261_167929485_167940303
ES_00031547	chr2	+	248	2	Intergenic	novelGene_2442	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCTTCCTGGGTCAGTT	5483	False	NA	NA	False	NA	NA	NA	168676000	168676813	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168676052_168676616
ES_00031556	chr2	+	3641	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	-24	0	-24	0	multi-exon	FALSE	canonical	3	138	junction_1	7.5	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGTCTGCCGTCTGGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	172187460	172197669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_172187768_172193374_172193545_172194505
ES_00031557	chr2	+	3331	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTGACGTAAAGGTAGTT	NA	False	NA	12	True	AATAAA	-19	NA	172212601	172224367	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
ES_00031561	chr2	+	3003	7	FSM	ENSMUSG00000028640.12	ENSMUST00000099058.10	2985	7	-18	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCTGGTTCTGACCCTT	NA	False	NA	22	True	AATAAA	-24	NA	172392683	172400539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ES_00031569	chr2	+	2295	3	FSM	ENSMUSG00000027510.18	ENSMUST00000155512.8	2281	3	-14	0	0	0	multi-exon	FALSE	canonical	3	757	junction_2	26	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAAGGTGGTTTGAGGTT	NA	False	NA	NA	False	AATAAA	-17	NA	172863691	172876521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_172864709_172865119_172865175_172875298
ES_00031575	chr2	+	4456	8	NIC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	11	junction_1	29.7787761703546	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCAGCATTCCTAGTATT	NA	False	NA	124	True	AATAAA	-22	NA	173918109	173941562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_173918983_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ES_00031576	chr2	+	4488	9	FSM	ENSMUSG00000027522.16	ENSMUST00000087908.10	3865	9	-623	0	-9	0	multi-exon	TRUE	canonical	1	10	junction_1	35.0633355515416	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	126	True	AATAAA	-24	NA	173918091	173941564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ES_00031577	chr2	+	4425	8	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	-9	0	intron_retention	FALSE	canonical	3	30	junction_1	23.5554058096468	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	126	True	AATAAA	-24	NA	173918091	173941564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_173918932_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ES_00031579	chr2	+	906	7	FSM	ENSMUSG00000039263.17	ENSMUST00000125502.3	906	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	124.085208179254	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCGAGGCACCCCCTAA	NA	False	NA	NA	False	NA	NA	NA	173952946	173962175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961297_173961453_173962019
ES_00031584	chr2	+	3664	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109085.8	1789	11	-1907	32	76	0	multi-exon	FALSE	non_canonical	0	0	junction_2	262.324150622851	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	False	NA	-17	True	NA	NA	NA	174169891	174188505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_174172228_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ES_00031585	chr2	+	1716	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	False	NA	-17	True	NA	NA	NA	174171881	174188505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ES_00031586	chr2	+	1703	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109084.8	1695	11	-8	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	245.35078968693	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174171881	174188537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_174172228_174176004_174176078_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ES_00031593	chr2	+	3090	6	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	0	1844	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	416.330926067233	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGACAAACAGAAATATCT	NA	False	NA	-1	True	NA	NA	NA	174852033	174862885	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951_174860386_174860553
ES_00031594	chr2	+	4448	5	Fusion	ENSMUSG00000080888.4_ENSMUSG00000078906.10	novel	1281	4	NA	NA	0	2143	multi-exon	TRUE	non_canonical	0	0	junction_4	430.100569634591	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTGAATAAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	174852033	174933854	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_174852115_174858430_174858558_174858749_174858811_174859951_174860234_174929957
ES_00031595	chr2	+	1353	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	1147	0	489	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCATCAGTATAATCAGT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859894	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_174852115_174858430_174858558_174858749
ES_00031597	chr2	+	1465	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	3049	-489	2971	489	3prime_fragment	FALSE	canonical	3	748	junction_1	226.5	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCATCAGTATAATCAGT	NA	False	NA	NA	False	NA	NA	NA	174855082	174859894	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_174855276_174858430_174858558_174858749
ES_00031598	chr2	+	1861	4	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	3021	440	combination_of_known_junctions	FALSE	canonical	3	515	junction_3	284.818460700067	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAACAGATCCTGGATGA	NA	False	NA	NA	False	NA	NA	NA	174855132	174861481	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_174855276_174858430_174858558_174858749_174858811_174859951
ES_00031613	chr2	+	606	6	FSM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	-7	0	-7	0	multi-exon	FALSE	canonical	3	14	junction_2	84.5846321739357	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661030	175671684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349_175670411_175671567
ES_00031615	chr2	+	1629	4	FSM	ENSMUSG00000078886.13	ENSMUST00000109007.8	1621	4	-8	0	-8	0	multi-exon	FALSE	canonical	3	28	junction_2	114.545478595476	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175757115	175769428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_175757228_175760682_175760738_175767761_175767889_175768093
ES_00031617	chr2	+	4283	1	Genic_Genomic	ENSMUSG00000078891.5	novel	NA	NA	NA	NA	1165	2529	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGATGAACAGCAGTATGA	NA	False	NA	NA	False	NA	NA	NA	175840745	175845028	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_175840700_175845000
ES_00031623	chr2	+	1277	3	FSM	ENSMUSG00000078879.11	ENSMUST00000121956.8	1271	3	-6	0	-6	0	multi-exon	FALSE	canonical	3	19	junction_2	40	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTCCCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	176362308	176371667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176362453_176370328_176370456_176370661
ES_00031624	chr2	+	6623	4	FSM	ENSMUSG00000078879.11	ENSMUST00000108985.9	1295	4	-12	-5316	-12	5316	multi-exon	FALSE	canonical	3	5	junction_3	41.4085337420521	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTTTC	NA	False	NA	NA	False	NA	NA	NA	176362342	176378199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176362453_176370328_176370456_176370661_176370723_176371874
ES_00031626	chr2	+	1167	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTGCAAACACTGTGA	NA	False	NA	NA	False	NA	NA	NA	176400147	176411996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
ES_00031628	chr2	+	1228	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	-15	0	-15	0	multi-exon	FALSE	canonical	3	47	junction_2	11.7284080571728	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGAGTTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	176490389	176500411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
ES_00031629	chr2	+	834	5	NIC	ENSMUSG00000078877.12	novel	2505	4	NA	NA	1	776	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	16.6038399173203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAGTCATCTCCACAAA	NA	False	NA	NA	False	NA	NA	NA	176490405	176501187	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702
ES_00031632	chr2	+	492	5	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	683	5	NA	NA	-50	33907	multi-exon	FALSE	canonical	3	20	junction_4	17.3835410661925	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACACCATGACTGTAATT	NA	False	NA	NA	False	NA	NA	NA	176692698	176813047	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176692840_176696293_176696349_176701473_176701601_176776368_176776430_176812939
ES_00031634	chr2	+	540	5	NIC	ENSMUSG00000078875.11	novel	683	5	NA	NA	0	451	combination_of_known_junctions	FALSE	canonical	3	46	junction_2	44.7178655572915	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAACAATGTGGTAAAGTC	NA	False	NA	NA	False	NA	NA	NA	176692748	176703228	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022
ES_00031635	chr2	+	5519	5	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	1749	4	NA	NA	-414	2789	multi-exon	FALSE	canonical	2	15	junction_4	56.8303396083465	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTTTTCAAGAAGAGAAT	NA	False	NA	NA	False	AATGAA	-30	NA	176695931	176781929	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176696349_176701473_176701601_176701806_176701868_176703022_176704665_176778657
ES_00031637	chr2	+	559	5	NNC	ENSMUSG00000078872.10	novel	973	4	NA	NA	-153	33925	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	52.578512721453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCCCCAACTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	176765959	176813065	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_176766152_176772059_176772113_176776035_176776163_176776368_176776430_176812939
ES_00031638	chr2	+	948	4	FSM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_2	72.8666971637631	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTTGCAGCAAGCATTG	NA	False	NA	NA	False	NA	NA	NA	176766112	176778827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176766152_176776035_176776163_176776368_176776430_176778106
ES_00031641	chr2	+	2308	3	FSM	ENSMUSG00000082724.4	ENSMUST00000118630.2	2308	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	4.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAACATTTCTAATTCTT	NA	False	NA	NA	False	NA	NA	NA	176830452	176834124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176830574_176830784_176830852_176832004
ES_00031649	chr2	+	817	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-237	-266	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	121.969941652305	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACCATGACTGTAACCAA	NA	False	NA	NA	False	NA	NA	NA	177400843	177411489	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ES_00031650	chr2	+	448	5	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-259	combination_of_known_junctions	FALSE	canonical	3	49	junction_2	122.051218756717	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	177401080	177411496	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_177401169_177404638_177404694_177409836_177409964_177410168_177410230_177411379
ES_00031652	chr2	+	550	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-259	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	177401080	177411496	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
ES_00031653	chr2	+	386	4	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-266	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	100.353818506766	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACCATGACTGTAACCAA	NA	False	NA	NA	False	NA	NA	NA	177401080	177411489	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_177401169_177409836_177409964_177410168_177410230_177411379
ES_00031656	chr2	+	3997	4	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	34	3733	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	19.3620476419435	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	177538922	177551310	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177539047_177546077_177546205_177546411_177546473_177547625
ES_00031657	chr2	+	573	3	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	82	34625	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	8	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTTGTTTGAAATATG	NA	False	NA	NA	False	TTTAAA	-10	NA	177538970	177582202	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177539047_177568633_177568718_177581789
ES_00031658	chr2	+	923	3	FSM	ENSMUSG00000074519.12	ENSMUST00000108925.10	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGATATGCAGTATAACAT	NA	False	NA	NA	False	NA	NA	NA	177665076	177674080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_177665175_177673047_177673175_177673382
ES_00031661	chr2	+	456	1	FSM	ENSMUSG00000061897.6	ENSMUST00000118761.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATCATACTCCCCAGTC	NA	False	NA	NA	False	AATGAA	-34	NA	178819217	178819673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_178819200_178819700
ES_00031663	chr2	+	2144	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	0	2468	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	11	True	NA	NA	NA	179056728	179061143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179056894_179057552_179057714_179059325
ES_00031664	chr2	+	1468	6	FSM	ENSMUSG00000000305.13	ENSMUST00000108911.2	1208	6	-191	-69	0	69	multi-exon	FALSE	canonical	3	23	junction_4	4.89897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGATTACATATGTCCCC	NA	False	NA	NA	False	NA	NA	NA	179084223	179489566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179084472_179086492_179086605_179422046_179422274_179439250_179439422_179484761_179484918_179489012
ES_00031667	chr2	+	2534	9	FSM	ENSMUSG00000039108.15	ENSMUST00000055485.12	2534	9	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_3	10.2705586508232	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCCTCTGTCCGTCAC	NA	False	NA	15	True	AATAAA	-16	NA	179666779	179677254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179667106_179668427_179668592_179669692_179669829_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
ES_00031670	chr2	+	1744	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	-14	0	-10	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712370	179727695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
ES_00031671	chr2	+	1701	10	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_3	39.9749921826134	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712383	179727695	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ES_00031674	chr2	+	1843	10	NNC	ENSMUSG00000039069.20	novel	1444	7	NA	NA	89	0	at_least_one_novel_splicesite	TRUE	canonical	1	7	junction_1	62.273788156479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712473	179727695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179712641_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ES_00031675	chr2	+	923	2	FSM	ENSMUSG00000039069.20	ENSMUST00000136803.2	1009	2	0	86	0	-86	multi-exon	FALSE	canonical	3	230	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTATATGGTGATGCCTT	NA	False	NA	NA	False	NA	NA	NA	179720412	179724597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179720617_179723878
ES_00031678	chr2	+	2761	14	NNC	ENSMUSG00000039050.9	novel	2805	14	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	46.788963448571	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAACATGGGTTGAAGGTT	NA	False	NA	7	True	ATTAAA	-13	NA	179761112	179804470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179761263_179778771_179778906_179780032_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
ES_00031679	chr2	+	1797	13	FSM	ENSMUSG00000039050.9	ENSMUST00000142376.2	1688	13	0	-109	0	109	multi-exon	TRUE	canonical	3	166	junction_6	20.4306074853936	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTTCAAATATGGTCAG	NA	False	NA	NA	False	NA	NA	NA	179761196	179801194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821
ES_00031682	chr2	+	2587	5	FSM	ENSMUSG00000039041.16	ENSMUST00000128029.8	2576	5	-11	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_4	179.611386053335	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTATGGTCTGGGCCTGTG	NA	False	NA	0	True	AATAAA	-20	NA	179813387	179818077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179816740_179816952
ES_00031684	chr2	+	683	5	NIC	ENSMUSG00000039001.13	novel	394	6	NA	NA	-119	0	intron_retention	FALSE	canonical	3	3954	junction_4	1482.42763314099	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899050	179900235	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ES_00031685	chr2	+	475	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	-84	3	-84	0	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899085	179900235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ES_00031688	chr2	+	1531	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	-21	0	-21	0	multi-exon	TRUE	canonical	3	47	junction_3	10.4253297309965	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224483	180228080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
ES_00031689	chr2	+	1857	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	-32	0	-21	0	multi-exon	FALSE	canonical	3	65	junction_2	3.55902608401044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224483	180228097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
ES_00031691	chr2	+	1678	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	-23	0	-23	0	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCTTCTAAAAAGTTCT	NA	False	NA	18	True	AATAAA	-29	NA	180351886	180360526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
ES_00031701	chr2	+	1153	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCTCCCCACTACTTGC	3385	False	NA	NA	False	NA	NA	NA	180829088	180830534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
ES_00031702	chr2	+	761	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	-11	0	0	0	multi-exon	TRUE	canonical	3	258	junction_1	285.921123544395	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
ES_00031703	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	248.035279748668	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
ES_00031704	chr2	+	899	4	NIC	ENSMUSG00000016344.15	novel	689	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	629	junction_1	111.05254011803	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180829530_180829601_180829680_180829796_180829894_180829974
ES_00031705	chr2	+	1110	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	-339	0	-50	0	multi-exon	TRUE	canonical	3	861	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3286	False	NA	1	True	AATAAA	-17	NA	180828989	180830297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180829680_180829796_180829894_180829974
ES_00031709	chr2	+	4326	33	FSM	ENSMUSG00000038685.19	ENSMUST00000098971.11	4307	33	-19	0	-19	0	multi-exon	TRUE	canonical	3	28	junction_30	51.0130095998805	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961512	180998409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997102_180997346_180997443_180997606_180997716
ES_00031710	chr2	+	4471	33	FSM	ENSMUSG00000038685.19	ENSMUST00000139608.8	4448	33	-23	0	0	0	multi-exon	FALSE	canonical	3	117	junction_30	43.3964284244683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTGTAGGCTGTCCAAT	NA	False	NA	-23	True	NA	NA	NA	180961531	180998371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
ES_00031711	chr2	+	4424	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	-23	0	0	0	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961531	180998409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
ES_00031712	chr2	+	4091	35	NIC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_33	59.5404619481285	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTGTCTGTATTGTGGTC	NA	False	NA	14	True	AATAAA	-15	NA	180961551	180998408	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
ES_00031713	chr2	+	4209	36	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_34	59.3590527456187	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961551	180998409	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
ES_00031714	chr2	+	4322	34	FSM	ENSMUSG00000038685.19	ENSMUST00000108814.8	4322	34	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_31	42.9439380842258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTGTAGGCTGTCCAAT	NA	False	NA	-23	True	NA	NA	NA	180961577	180998371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
ES_00031715	chr2	+	4243	33	FSM	ENSMUSG00000038685.19	ENSMUST00000108815.8	4243	33	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_30	41.94582396899	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961577	180998409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
ES_00031723	chr2	+	2323	14	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	2	0	intron_retention	FALSE	canonical	3	12	junction_11	83.8299913850723	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	6871	False	NA	15	True	AATAAA	-16	NA	180991922	180998409	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997209_180997346_180997443_180997606_180997716
ES_00031727	chr2	+	2083	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007186	181022575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
ES_00031728	chr2	+	4475	10	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	3	-3	intron_retention	FALSE	canonical	3	53	junction_7	40.6748625620843	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	181007200	181025416	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
ES_00031729	chr2	+	3681	11	FSM	ENSMUSG00000027582.17	ENSMUST00000116366.9	3666	11	-15	0	3	0	multi-exon	FALSE	canonical	3	28	junction_6	46.2520269826091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	181007200	181025421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181023188_181023986_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
ES_00031730	chr2	+	4892	6	FSM	ENSMUSG00000027582.17	ENSMUST00000131284.8	4892	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	37.4785271855765	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTGGCTCTTGGTTGCT	NA	False	NA	NA	False	ATTAAA	-13	NA	181007244	181025419	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181024108_181024279
ES_00031739	chr2	+	2971	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-21	0	-4	0	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAATTCACTATGCTCC	NA	False	NA	NA	False	NA	NA	NA	181138952	181159164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ES_00031740	chr2	+	3498	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	-23	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAACATTTGTAAGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	181138956	181159755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ES_00031741	chr2	+	1817	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	-18	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGCTGTCATCTTT	NA	False	NA	NA	False	AATGAA	-44	NA	181138973	181158049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ES_00031742	chr2	+	6565	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	0	13	0	-13	multi-exon	FALSE	canonical	3	111	junction_4	50.7413785780402	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAACCACTACCTGGTT	7005	False	NA	NA	False	NA	NA	NA	181162277	181196913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
ES_00031743	chr2	+	6599	6	FSM	ENSMUSG00000000826.17	ENSMUST00000116365.9	3728	6	0	-2871	0	-13	multi-exon	FALSE	canonical	3	78	junction_5	67.7642973843897	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAACCACTACCTGGTT	7046	False	NA	NA	False	NA	NA	NA	181162318	181196913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
ES_00031745	chr2	+	4989	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	15	1248	intron_retention	FALSE	canonical	3	55	junction_1	77.7924589318699	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCACTGTAGACCAGATAA	7086	False	NA	NA	False	AATAAA	-24	NA	181162358	181195290	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
ES_00031746	chr2	+	2801	7	NIC	ENSMUSG00000000826.17	novel	3664	6	NA	NA	45	-672	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	83.5144698041403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCTCCATATGTAGATCA	7116	False	NA	NA	False	AATAAA	-16	NA	181162388	181193353	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181191065_181191814_181191959
ES_00031755	chr2	-	1042	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGGATCCTGCATGGA	2317	False	NA	-15	True	AATAAA	-18	NA	3333680	3329985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_3330911_3333563
ES_00031756	chr2	-	4327	6	FSM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	33.2024095511154	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTTGTTCTGTATTT	NA	False	NA	-2	True	AATAAA	-16	NA	3476068	3456851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3473538_3473685_3475739
ES_00031757	chr2	-	2331	5	FSM	ENSMUSG00000026646.17	ENSMUST00000127540.2	2331	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	64.4995155020563	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGAAAAAACTTACTT	NA	False	NA	-33	True	AGTAAA	-5	NA	3476006	3458639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3475739
ES_00031758	chr2	-	1795	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3942	False	NA	-5	True	ATTAAA	-20	NA	3513851	3489886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ES_00031759	chr2	-	4314	5	FSM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	532.771702983557	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGGGTTTGTCTACTTC	3999	False	NA	NA	False	AATAAA	-19	NA	3513794	3505563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_3508787_3509329_3510133_3512051_3512135_3512210_3512292_3513670
ES_00031760	chr2	-	2390	5	FSM	ENSMUSG00000051396.16	ENSMUST00000140494.2	2390	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	525.594425389007	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTATCTGAGGCTCTTT	3966	False	NA	NA	False	AGTAAA	-13	NA	3513827	3507445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_3508787_3509329_3510058_3512051_3512135_3512210_3512292_3513670
ES_00031761	chr2	-	3524	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	0	-2	0	2	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGCTGCTTGATTCATT	NA	False	NA	NA	False	AGTAAA	-25	NA	4656897	4626866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ES_00031762	chr2	-	334	1	FSM	ENSMUSG00000082795.2	ENSMUST00000117275.2	225	1	-72	-37	-72	37	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGGACATAATGCCTTG	NA	False	NA	NA	False	TATAAA	-35	NA	4961176	4960842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4960800_4961200
ES_00031763	chr2	-	208	1	FSM	ENSMUSG00000069188.6	ENSMUST00000101199.3	208	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTGCAGCTGGTGGGGG	NA	False	NA	NA	False	NA	NA	NA	4964563	4964355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4964400_4964600
ES_00031764	chr2	-	2764	5	FSM	ENSMUSG00000026669.15	ENSMUST00000151533.2	789	5	-429	-1546	-429	0	multi-exon	FALSE	canonical	3	707	junction_3	72.3550274687254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATGTTTATCTTTTTTC	1497	False	NA	NA	False	ATTAAA	-19	NA	5000078	4994524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380
ES_00031765	chr2	-	4867	20	FSM	ENSMUSG00000026669.15	ENSMUST00000102985.8	4867	20	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_19	167.610417568725	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATGTTTATCTTTTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	5017155	4994524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5016705
ES_00031766	chr2	-	3494	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017602	4995534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
ES_00031767	chr2	-	2475	4	FSM	ENSMUSG00000026669.15	ENSMUST00000125201.2	2475	4	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_3	9.20144916122817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAAAAAGTC	2831	False	NA	NA	False	NA	NA	NA	5009910	5003831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5005868_5006074_5006192_5008818_5008987_5009756
ES_00031768	chr2	-	866	4	FSM	ENSMUSG00000026669.15	ENSMUST00000125851.2	866	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	90.1566537878499	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCGCGCGTGTGTGTGTG	NA	False	NA	NA	False	AATACA	-15	NA	5017526	5011808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5012244_5013290_5013624_5015499_5015587_5017515
ES_00031769	chr2	-	2867	14	FSM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	-40	-213	-34	213	multi-exon	FALSE	canonical	3	74	junction_13	32.625179951441	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCAAACCTGGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	5068896	5025239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ES_00031770	chr2	-	2123	8	FSM	ENSMUSG00000026672.12	ENSMUST00000125203.8	2299	8	176	0	176	0	multi-exon	FALSE	canonical	3	32	junction_1	41.5294338698593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5040538	5025452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778
ES_00031771	chr2	-	4138	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	-154	-1573	-41	1571	multi-exon	FALSE	canonical	3	32	junction_1	40.4028817925511	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGAGTTCCTATTTT	NA	False	NA	1	True	NA	NA	NA	5068903	5023881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ES_00031772	chr2	-	697	5	FSM	ENSMUSG00000026672.12	ENSMUST00000143809.2	697	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	37.5599520766467	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGAGAAGCTGAAGACC	NA	False	NA	NA	False	NA	NA	NA	5068862	5050967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5051011_5057798_5058002_5059350_5059528_5067669_5067799_5068717
ES_00031773	chr2	-	6977	11	FSM	ENSMUSG00000039145.17	ENSMUST00000044009.14	6962	11	-17	2	-17	-2	multi-exon	FALSE	canonical	3	18	junction_10	11.2977873939989	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGGGTTGTCTGTTTCC	NA	False	NA	-1	True	AATAAA	-19	NA	5719343	5298269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5718956
ES_00031774	chr2	-	7005	11	NNC	ENSMUSG00000039145.17	novel	6962	11	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	16.2160414404996	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTTGTCTGTTTCCTA	NA	False	NA	1	True	AATAAA	-21	NA	5719365	5298267	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_5303913_5306302_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5718956
ES_00031776	chr2	-	1830	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	0	-3	0	3	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTCTGGTTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	5849975	5799101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ES_00031777	chr2	-	562	5	FSM	ENSMUSG00000039128.14	ENSMUST00000150876.2	562	5	0	0	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	96.4507646418627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTCTCAGTTGAGCAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	5849662	5827626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ES_00031778	chr2	-	2447	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	1	0	1	0	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900242	5875797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ES_00031779	chr2	-	2110	11	FSM	ENSMUSG00000025816.16	ENSMUST00000193792.6	2110	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	89.7356673792534	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTTGCAGTTGT	NA	False	NA	-59	True	AATAAA	-9	NA	5900145	5875839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ES_00031783	chr2	-	5503	17	FSM	ENSMUSG00000025815.14	ENSMUST00000095147.9	5480	17	12	-35	12	35	multi-exon	FALSE	canonical	3	33	junction_14	8.78119439484174	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAATTTCTTATGTTTTC	NA	False	NA	-3	True	AATAAA	-28	NA	5947591	5900890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
ES_00031784	chr2	-	4013	4	FSM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	0	385	0	-385	multi-exon	FALSE	canonical	3	22	junction_3	5.90668171555645	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGATGCTGCCCACTGG	NA	False	NA	NA	False	NA	NA	NA	6135022	6102802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134852
ES_00031785	chr2	-	338	1	FSM	ENSMUSG00000118578.2	ENSMUST00000238876.2	818	1	126	354	126	-354	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGCGCTGTTCCCGCGCT	NA	False	NA	NA	False	NA	NA	NA	6327765	6327427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6327400_6327800
ES_00031786	chr2	-	7044	13	FSM	ENSMUSG00000002107.19	ENSMUST00000100429.11	7491	13	2	445	0	-445	multi-exon	FALSE	canonical	3	11	junction_4	7.1816703411455	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTGGCCAGACAATCAGC	NA	False	NA	NA	False	AATAAA	-3	NA	6726424	6544960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227
ES_00031787	chr2	-	2223	12	FSM	ENSMUSG00000002107.19	ENSMUST00000182879.8	2223	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	9.50684833629191	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	6726426	6549651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6550487_6551852_6552025_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227
ES_00031788	chr2	-	1530	12	FSM	ENSMUSG00000002107.19	ENSMUST00000150624.9	2332	12	0	802	0	-170	multi-exon	FALSE	canonical	3	17	junction_5	6.43852043986392	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTCCCACAAGCCAGCC	NA	False	NA	NA	False	NA	NA	NA	6726424	6551852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6552025_6554642_6554787_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227
ES_00031789	chr2	-	1418	2	NNC	ENSMUSG00000082953.4	novel	953	4	NA	NA	310	473	intron_retention	FALSE	non_canonical	3	217	junction_1	0	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAACTAGT	NA	False	NA	NA	False	NA	NA	NA	9046985	9045461	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_9046821_9046926
ES_00031790	chr2	-	1129	3	NNC	ENSMUSG00000082953.4	novel	953	4	NA	NA	279	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTTCACCAGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	9047016	9045678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_9046478_9046580_9046821_9046926
ES_00031791	chr2	-	4793	7	FSM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	0	-1	0	1	multi-exon	FALSE	canonical	3	96	junction_4	19.5078331845327	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTCCATTTTCTTT	NA	False	NA	1	True	AATAAA	-21	NA	10053407	9919361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924_9957757_10047237_10047481_10053045
ES_00031792	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	1503.84357564209	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	9587	False	NA	12	True	AATAAA	-33	NA	10085238	10060826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ES_00031793	chr2	-	1166	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	0	0	0	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9504	False	NA	-2	True	AATAAA	-19	NA	10085321	10060840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ES_00031794	chr2	-	650	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8804	19674	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.084336693988	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGTAATTTGACCTA	NA	False	NA	NA	False	NA	NA	NA	10370048	10324419	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_10324454_10344090_10344284_10346331_10346540_10350061_10350197_10369968
ES_00031795	chr2	-	654	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8804	19674	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	230.435864179168	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGTAATTTGACCTA	NA	False	NA	NA	False	NA	NA	NA	10370048	10324419	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_10324454_10344090_10344284_10346331_10346540_10350061_10350197_10369964
ES_00031796	chr2	-	718	1	FSM	ENSMUSG00000083900.3	ENSMUST00000121757.3	1330	1	-65	677	-65	-677	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAACCTAGAGGCCTC	NA	False	NA	NA	False	NA	NA	NA	11105138	11104420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11104400_11105100
ES_00031797	chr2	-	1260	1	FSM	ENSMUSG00000082424.5	ENSMUST00000120014.3	1000	1	-61	-199	-61	199	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAAAGTGCTGGCC	NA	False	NA	NA	False	AATAAA	-32	NA	11414902	11413642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11413600_11414900
ES_00031798	chr2	-	4641	15	FSM	ENSMUSG00000026773.20	ENSMUST00000114846.9	4634	15	-7	0	-7	0	multi-exon	FALSE	canonical	3	18	junction_2	9.41693004267163	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGACTCGCTTCTC	6301	False	NA	-5	True	AATAAA	-17	NA	11506919	11476636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
ES_00031799	chr2	-	4537	16	NNC	ENSMUSG00000026773.20	novel	4756	16	NA	NA	17	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.8595484268537	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGGACTCGCTTCTCA	6351	False	NA	-4	True	AATAAA	-18	NA	11506869	11476635	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_11477682_11477736_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
ES_00031800	chr2	-	1599	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	0	0	0	0	multi-exon	FALSE	canonical	3	1239	junction_6	93.4948621914506	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	False	NA	-24	True	TATAAA	-18	NA	11608073	11590247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
ES_00031803	chr2	-	3566	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	0	3	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTACTGTCATTTTTAAG	NA	False	NA	3	True	ATTAAA	-40	NA	11782359	11747380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
ES_00031804	chr2	-	3572	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	0	-5	0	3	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTACTGTCATTTTTAAG	NA	False	NA	3	True	ATTAAA	-40	NA	11782393	11747380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
ES_00031806	chr2	-	620	1	FSM	ENSMUSG00000080801.3	ENSMUST00000120962.3	1381	1	385	376	385	-376	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACGAATATTCAGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	12088418	12087798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_12087800_12088400
ES_00031807	chr2	-	1987	12	FSM	ENSMUSG00000026767.13	ENSMUST00000154899.7	1984	12	0	-3	0	3	multi-exon	FALSE	canonical	1	5	junction_9	46.6171323098428	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCACTTTTACATTTGTGA	NA	False	NA	-19	True	AATAAA	-22	NA	12424259	12352070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12410670_12410732_12414811_12414892_12423969
ES_00031808	chr2	-	2346	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	0	-2	0	2	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCACTTTTACATTTGTG	NA	False	NA	-20	True	AATAAA	-21	NA	12424281	12352071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ES_00031809	chr2	-	1663	8	NIC	ENSMUSG00000026767.13	novel	1843	10	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTTGCACTTTTACATT	NA	False	NA	-24	True	AATAAA	-17	NA	12424235	12352075	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
ES_00031811	chr2	-	1546	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7043	False	NA	-7	True	AATAAA	-12	NA	13276226	13081822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ES_00031812	chr2	-	1513	7	FSM	ENSMUSG00000026727.11	ENSMUST00000162223.8	1505	7	0	-8	0	8	multi-exon	FALSE	canonical	3	310	junction_3	21.3911975666005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTATCCTTTGATAG	7125	False	NA	NA	False	NA	NA	NA	13276144	13220802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ES_00031815	chr2	-	3783	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	0	5	0	-5	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	1269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATCACCATTGTGAAAC	9029	False	NA	NA	False	ATTAAA	-18	NA	13549479	13513829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
ES_00031816	chr2	-	7621	8	FSM	ENSMUSG00000003418.12	ENSMUST00000003509.10	7618	8	0	-3	0	3	multi-exon	FALSE	canonical	3	67	junction_4	4.91146098219174	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGTTGTGAGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	13798875	13655828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13662102_13670230_13670324_13673595_13673709_13677293_13677439_13701638_13701726_13728253_13728344_13797564_13797664_13798154
ES_00031817	chr2	-	888	6	FSM	ENSMUSG00000063275.16	ENSMUST00000091429.12	871	6	0	-17	0	17	multi-exon	FALSE	canonical	1	3	junction_3	43.3340512761039	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAATATAAGAAAAAGCAT	NA	False	NA	15	True	AATAAA	-36	NA	14060831	14031624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_14031818_14040589_14040769_14049593_14049683_14049758_14049778_14049948_14050067_14060541
ES_00031818	chr2	-	544	1	FSM	ENSMUSG00000070271.8	ENSMUST00000117485.3	433	1	-44	-67	-44	67	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAACCACCCTGAGACA	NA	False	NA	NA	False	ATTAAA	-39	NA	14632176	14631632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_14631600_14632200
ES_00031819	chr2	-	780	1	FSM	ENSMUSG00000085281.4	ENSMUST00000140537.2	691	1	6	-95	6	95	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATATTGGTATTGGGCT	6574	False	NA	NA	False	NA	NA	NA	14817343	14816563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_14816600_14817300
ES_00031820	chr2	-	2897	11	FSM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.53287759199674	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTGAAAAATATCAT	978	False	NA	NA	False	NA	NA	NA	15054091	14999941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
ES_00031823	chr2	-	2346	1	FSM	ENSMUSG00000081619.2	ENSMUST00000118087.2	414	1	-6	-1926	-6	1926	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGAAAAGCCAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	18184259	18181913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_18181900_18184300
ES_00031824	chr2	-	5497	12	FSM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.9016666653772	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTATGTATAATATT	NA	False	NA	NA	False	AATAAA	-21	NA	18397641	18218559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
ES_00031826	chr2	-	3478	10	FSM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	0	-1	0	1	multi-exon	FALSE	canonical	3	72	junction_7	14.3139403690559	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTCTCTGTGCTGGA	NA	False	NA	1	True	AATAAA	-22	NA	19002937	18847064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18877094_18877242_18893862_18894016_18911039_18911137_18912865_18912964_19002662
ES_00031827	chr2	-	1061	1	FSM	ENSMUSG00000081128.2	ENSMUST00000120816.2	1020	1	1	-42	1	42	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGAGGACAGGCCACCC	NA	False	NA	NA	False	NA	NA	NA	20240874	20239813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_20239800_20240900
ES_00031830	chr2	-	7066	25	NIC	ENSMUSG00000036591.17	novel	6920	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_24	20.8291662499166	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCACTGTTGGGAGCTT	NA	False	NA	-21	True	AATAAA	-15	NA	20973436	20852750	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973290
ES_00031831	chr2	-	519	1	FSM	ENSMUSG00000082516.2	ENSMUST00000121055.2	207	1	-81	-231	-81	231	mono-exon	FALSE	NA	NA	NA	NA	NA	1354	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGAAATATGAGTTAT	1097	False	NA	NA	False	AATAAA	-17	NA	22415623	22415104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_22415100_22415600
ES_00031833	chr2	-	672	1	FSM	ENSMUSG00000083863.2	ENSMUST00000120780.2	672	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAATGTTCTGTTCA	NA	False	NA	-6	True	ACTAAA	-35	NA	22477974	22477302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_22477300_22478000
ES_00031834	chr2	-	275	1	Genic_Genomic	ENSMUSG00000069136.5	novel	NA	NA	NA	NA	-26	-167	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGCTCTAGTCGGGAGC	NA	False	NA	NA	False	NA	NA	NA	22785774	22785499	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_22785500_22785800
ES_00031835	chr2	-	3360	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930207	22830084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ES_00031836	chr2	-	3316	9	FSM	ENSMUSG00000058835.15	ENSMUST00000149719.8	3303	9	0	-13	0	0	multi-exon	FALSE	canonical	3	21	junction_2	106.193220122567	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930253	22830084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ES_00031839	chr2	-	3032	10	FSM	ENSMUSG00000058835.15	ENSMUST00000078977.14	3027	10	0	-5	0	0	multi-exon	FALSE	canonical	2	7	junction_7	139.976188451227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930242	22830375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_22832060_22836587_22836774_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
ES_00031840	chr2	-	3403	10	FSM	ENSMUSG00000058835.15	ENSMUST00000140164.8	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	62.0443887296789	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930253	22830084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ES_00031842	chr2	-	4664	12	NNC	ENSMUSG00000026779.7	novel	5590	12	NA	NA	18	-797	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	43.4758411112491	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAAAACTTCGTGCGTT	NA	False	NA	NA	False	NA	NA	NA	23045891	23006414	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035359_23035465_23036053_23036194_23040999_23041138_23045690
ES_00031843	chr2	-	1325	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	-136	12	-9	-12	multi-exon	FALSE	canonical	3	131	junction_4	13.2759180473518	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTTCATCCTCATTTAG	NA	False	NA	NA	False	TATAAA	-4	NA	23046045	23026707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ES_00031844	chr2	-	6595	11	FSM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	7.44580418759451	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTTCTTGCTTGGATT	NA	False	NA	-2	True	AATAAA	-22	NA	23462116	23396231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23433208_23433337_23434757_23434910_23435164_23435287_23435455_23435592_23461854
ES_00031845	chr2	-	321	1	ISM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	63067	2497	6186	1955	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGATCTCACGAGAACCT	NA	False	NA	NA	False	NA	NA	NA	23399049	23398728	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_23398700_23399000
ES_00031846	chr2	-	4176	12	FSM	ENSMUSG00000026771.15	ENSMUST00000132827.8	1516	12	-107	-2553	-7	1955	multi-exon	FALSE	canonical	3	30	junction_7	7.08391263228297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGATCTCACGAGAACCT	NA	False	NA	NA	False	NA	NA	NA	23462097	23398728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23431530_23431628_23433208_23433337_23434757_23434910_23435164_23435287_23435455_23435592_23461854
ES_00031848	chr2	-	1327	1	FSM	ENSMUSG00000084241.2	ENSMUST00000117264.2	1612	1	211	74	211	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGAGTTATGAACAACTA	NA	False	NA	NA	False	NA	NA	NA	24484314	24482987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24483000_24484300
ES_00031849	chr2	-	5953	27	FSM	ENSMUSG00000036893.18	ENSMUST00000147147.8	5953	27	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_23	50.1601134592868	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCATTGTCTTTTTT	9590	False	NA	NA	False	AATAAA	-17	NA	24809626	24679939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777082_24809565
ES_00031851	chr2	-	4694	27	FSM	ENSMUSG00000036893.18	ENSMUST00000102938.10	4680	27	0	-14	0	0	multi-exon	FALSE	canonical	3	154	junction_23	33.3131324390158	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAACAAAATGATTT	9613	False	NA	NA	False	AATAAA	-25	NA	24809603	24681154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
ES_00031852	chr2	-	4615	27	FSM	ENSMUSG00000036893.18	ENSMUST00000091348.11	4615	27	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_26	45.6963867643122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGGTGCTGAATCTGGTG	9617	False	NA	NA	False	AATAAA	-16	NA	24809599	24681226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
ES_00031854	chr2	-	2777	15	FSM	ENSMUSG00000036893.18	ENSMUST00000139000.4	3651	15	0	874	0	-874	multi-exon	FALSE	canonical	3	73	junction_14	52.715689102496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCTATGATCATGCAA	9625	False	NA	NA	False	ATTAAA	-19	NA	24809591	24725987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
ES_00031857	chr2	-	1669	8	FSM	ENSMUSG00000026972.16	ENSMUST00000028349.14	1666	8	0	-3	0	3	multi-exon	FALSE	canonical	3	62	junction_2	7.55658923167897	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCGAGTGGCTGGCCTTCT	9317	False	NA	-28	True	AATAAA	-20	NA	24825264	24815360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ES_00031859	chr2	-	773	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	1	2	1	-2	multi-exon	FALSE	canonical	3	317	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTATGTGTTTTGAATCAA	NA	False	NA	-5	True	ATTAAA	-19	NA	24865109	24864130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24864694_24864899
ES_00031861	chr2	-	2766	12	FSM	ENSMUSG00000013465.20	ENSMUST00000128876.8	2754	12	0	-12	0	8	multi-exon	FALSE	canonical	3	539	junction_7	56.9757089026427	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTTGTCCTGGGACT	NA	False	NA	NA	False	AATAAA	-28	NA	25101393	25089715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720
ES_00031864	chr2	-	1329	2	FSM	ENSMUSG00000036770.12	ENSMUST00000155706.2	1329	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGTGTTTT	NA	False	NA	NA	False	ACTAAA	-19	NA	25103663	25102218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25103185_25103300
ES_00031865	chr2	-	1603	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	0	-5	0	5	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTCCAATTCCTTCTGA	NA	False	NA	-19	True	ATTAAA	-23	NA	25114714	25112166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
ES_00031866	chr2	-	831	2	FSM	ENSMUSG00000036752.5	ENSMUST00000145607.2	831	2	0	0	0	0	multi-exon	FALSE	canonical	3	1369	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAAAGCTTGTGCCATT	NA	False	NA	NA	False	NA	NA	NA	25114666	25113534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25114245_25114545
ES_00031867	chr2	-	4833	13	Fusion	ENSMUSG00000006471.19_ENSMUSG00000115018.3	novel	2336	14	NA	NA	1	6	intron_retention	FALSE	canonical	3	150	junction_2	19.1717384593979	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCCATCCTCATTATT	NA	False	NA	NA	False	AATAAA	-25	NA	25145397	25134824	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
ES_00031868	chr2	-	2336	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145421	25137240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
ES_00031870	chr2	-	859	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	0	-14	0	14	multi-exon	FALSE	canonical	3	46	junction_2	398.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCATATATCCTGTTGGT	NA	False	NA	8	True	AATAAA	-30	NA	25162422	25161036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25161594_25161940_25162141_25162320
ES_00031872	chr2	-	1006	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCCATGGCCTCTGG	NA	False	NA	-53	True	AAGAAA	-32	NA	25162450	25161097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25161594_25161940
ES_00031874	chr2	-	640	2	FSM	ENSMUSG00000026959.14	ENSMUST00000153465.2	634	2	0	-6	0	6	multi-exon	FALSE	canonical	3	31	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGGGACAGTGGGTGGA	1679	False	NA	NA	False	NA	NA	NA	25195112	25193486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25194064_25195049
ES_00031876	chr2	-	1696	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	0	-14	0	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATGCATGGAAGGATGAG	9001	False	NA	-3	True	AATAAA	-31	NA	25246371	25242287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
ES_00031877	chr2	-	1159	8	FSM	ENSMUSG00000026958.14	ENSMUST00000144218.8	1159	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	91.9929012345574	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAAGGCCTGGGCTGGTGT	9063	False	NA	NA	False	NA	NA	NA	25246309	25243371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25245569_25245734_25245825_25245966_25246040
ES_00031880	chr2	-	3346	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	0	3	0	-3	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAGGAGTCCACGTGG	NA	False	NA	NA	False	GATAAA	-15	NA	25255694	25249903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
ES_00031882	chr2	-	1354	3	FSM	ENSMUSG00000026956.16	ENSMUST00000151131.8	1353	3	0	-1	0	0	multi-exon	FALSE	canonical	3	466	junction_2	8.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTCTGTCTATTTT	1662	False	NA	-15	True	NA	NA	NA	25253710	25251500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25251752_25252082_25252150_25252674
ES_00031884	chr2	-	917	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTCCGTCAAATAAACT	5322	False	NA	-53	True	NA	NA	NA	25351020	25349542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
ES_00031886	chr2	-	678	3	FSM	ENSMUSG00000047617.12	ENSMUST00000138079.8	765	3	0	87	0	-71	multi-exon	FALSE	canonical	3	16	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATGCCACGACTCTCTC	5307	False	NA	NA	False	NA	NA	NA	25351035	25350110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25350370_25350456_25350507_25350666
ES_00031887	chr2	-	1209	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	-59	0	-59	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390684	25388662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
ES_00031888	chr2	-	3044	11	FSM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	20.6164982477626	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTTGTATTTGAC	NA	False	NA	NA	False	NA	NA	NA	25436952	25407993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877_25429097_25436873
ES_00031889	chr2	-	2151	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	38.6141165896619	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25436922	25408877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
ES_00031890	chr2	-	925	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	12	0	12	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5212	False	NA	-8	True	ATTAAA	-20	NA	25465224	25463441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25463712_25464199_25464325_25464694
ES_00031891	chr2	-	656	3	FSM	ENSMUSG00000036504.7	ENSMUST00000147096.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	365.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTGCCAGGCCTTA	5546	False	NA	-80	True	GGGGCT	-34	NA	25464890	25463513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25463712_25464199_25464462_25464694
ES_00031894	chr2	-	742	5	NIC	ENSMUSG00000026939.13	novel	795	5	NA	NA	0	7	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	18.9406969248758	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCTGAAGCAATTAAACAC	NA	False	NA	1	True	AATAAA	-25	NA	25511980	25510108	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_25510543_25511077_25511186_25511372_25511471_25511619_25511687_25511945
ES_00031895	chr2	-	797	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	-2	0	2	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCTGTGGGTGAAGCGC	NA	False	NA	33	True	ATTAAA	-16	NA	25512017	25510076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
ES_00031896	chr2	-	813	5	NNC	ENSMUSG00000026939.13	novel	795	5	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	22.0907220343745	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTATGTGAGCTCTGAAGC	NA	False	NA	-9	True	AATAAA	-15	NA	25511980	25510118	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25510543_25511077_25511186_25511372_25511471_25511619_25511768_25511945
ES_00031897	chr2	-	583	4	FSM	ENSMUSG00000026939.13	ENSMUST00000128149.2	583	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	21.7460085737335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACCAAATCCAGGACCTG	NA	False	NA	NA	False	NA	NA	NA	25511792	25510338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25510543_25511077_25511186_25511372_25511471_25511619
ES_00031898	chr2	-	7981	17	FSM	ENSMUSG00000026933.18	ENSMUST00000114167.9	7981	17	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	28.655006107136	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGGAAGAAAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	25873294	25816849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825574_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25872793
ES_00031899	chr2	-	7743	17	NIC	ENSMUSG00000026933.18	novel	7981	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_16	31.7755802464723	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGGAAGAAAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	25873294	25816849	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25873034
ES_00031900	chr2	-	7975	17	NIC	ENSMUSG00000026933.18	novel	7981	17	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	3	81	junction_13	18.9348182919721	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGGGGAAGAAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	25873286	25816850	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25872793
ES_00031902	chr2	-	1852	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911759	25888554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
ES_00031904	chr2	-	6381	6	FSM	ENSMUSG00000026932.15	ENSMUST00000028300.6	6378	6	0	-3	0	3	multi-exon	FALSE	canonical	3	39	junction_4	3.79473319220206	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTTTGCTTGACC	8899	False	NA	3	True	AATAAA	-19	NA	26012830	25945543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_26012700
ES_00031905	chr2	-	628	3	FSM	ENSMUSG00000026932.15	ENSMUST00000128674.2	628	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	19.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGATCCTGGAGAGA	2876	False	NA	NA	False	NA	NA	NA	25980387	25954503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25954631_25979554_25979737_25980068
ES_00031906	chr2	-	2481	2	FSM	ENSMUSG00000087679.3	ENSMUST00000133808.2	2483	2	0	2	0	-2	multi-exon	FALSE	canonical	3	70	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATGGAGTGATTGCTTA	NA	False	NA	-8	True	ATTAAA	-17	NA	26030533	26026827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26028926_26030150
ES_00031908	chr2	-	2562	13	FSM	ENSMUSG00000036327.19	ENSMUST00000036187.9	2559	13	-2	-1	-2	1	multi-exon	FALSE	canonical	3	18	junction_1	31.8210054663408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCAGTTTTTTGAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	26127539	26099135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26099806_26101285_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
ES_00031910	chr2	-	2916	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	24.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGGGGCGGCCACCAT	NA	False	NA	NA	False	AATAAA	-18	NA	26242122	26238132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26240571_26241346_26241487_26241784
ES_00031911	chr2	-	724	3	NNC	ENSMUSG00000075467.5	novel	2916	3	NA	NA	18	-2168	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_2	135.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTGGGCTCCTGTTTTT	NA	False	NA	-17	True	AGTAAA	-22	NA	26242094	26240300	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_26240571_26241346_26241491_26241784
ES_00031912	chr2	-	381	2	FSM	ENSMUSG00000026928.15	ENSMUST00000153370.2	516	2	135	0	135	0	multi-exon	FALSE	canonical	3	19	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGGTTGGATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	26242652	26242198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26242424_26242496
ES_00031916	chr2	-	4372	23	FSM	ENSMUSG00000036281.14	ENSMUST00000114115.9	4368	23	-4	0	0	0	multi-exon	FALSE	canonical	3	40	junction_10	11.6217948571845	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATAGCCTTTGGTGATTT	NA	False	NA	-3	True	AATAAA	-31	NA	26270665	26252776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
ES_00031917	chr2	-	724	2	FSM	ENSMUSG00000036281.14	ENSMUST00000136054.2	724	2	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGACCTGATAAGCTGTG	NA	False	NA	NA	False	AATAGA	-38	NA	26257782	26256625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26257314_26257746
ES_00031918	chr2	-	793	3	FSM	ENSMUSG00000036281.14	ENSMUST00000144871.2	793	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTTGGGTCTCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	26264750	26263573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26264198_26264503_26264577_26264654
ES_00031922	chr2	-	1959	8	FSM	ENSMUSG00000026927.18	ENSMUST00000077983.13	1955	8	0	-4	0	4	multi-exon	FALSE	canonical	3	120	junction_7	82.5556089640708	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTCTTGTCATTTACTC	NA	False	NA	1	True	AATAAA	-17	NA	26279309	26272809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26279160
ES_00031923	chr2	-	2035	9	FSM	ENSMUSG00000026927.18	ENSMUST00000028293.12	2031	9	0	-4	0	4	multi-exon	FALSE	canonical	3	146	junction_8	70.8147892392543	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTCTTGTCATTTACTC	NA	False	NA	1	True	AATAAA	-17	NA	26279316	26272809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26279160
ES_00031924	chr2	-	2197	10	FSM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	0	-4	0	4	multi-exon	FALSE	canonical	3	51	junction_9	111.566621850404	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTCTTGTCATTTACTC	NA	False	NA	1	True	AATAAA	-17	NA	26279328	26272809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927_26279078_26279160
ES_00031931	chr2	-	8798	31	FSM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	0	-1	0	1	multi-exon	FALSE	canonical	3	86	junction_3	26.343373613365	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGGCTTCCTTTGTGTTT	NA	False	NA	1	True	AATAAA	-28	NA	26335226	26299441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26300966_26302847_26302926_26303690_26303751_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
ES_00031932	chr2	-	8771	30	FSM	ENSMUSG00000026924.18	ENSMUST00000091252.5	8737	30	-31	-3	-31	1	multi-exon	FALSE	canonical	3	97	junction_2	23.0104665219992	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGGCTTCCTTTGTGTTT	NA	False	NA	1	True	AATAAA	-28	NA	26335259	26299441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26300966_26302847_26302926_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
ES_00031934	chr2	-	9488	34	FSM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_31	9.72382644510991	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGAGTGTGGTTTGGTTC	NA	False	NA	0	True	AATAAA	-34	NA	26393834	26347914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243_26358816_26359616_26359730_26359812_26360071_26360285_26360419_26360833_26361019_26361163_26361318_26362082_26362285_26362795_26363025_26363692_26363846_26364132_26364253_26366085_26366200_26366359_26366506_26366958_26367152_26367891_26368003_26368081_26368316_26368618_26368733_26369458_26369573_26369882_26370069_26370235_26370392_26370985_26371220_26371582_26371706_26374279_26374619_26375198_26375462_26391892_26391972_26393509
ES_00031935	chr2	-	1273	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9602	False	NA	1	True	TATAAA	-45	NA	26494223	26483068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
ES_00031937	chr2	-	2597	5	FSM	ENSMUSG00000026922.14	ENSMUST00000140386.8	1145	5	-6	-1446	-6	0	multi-exon	FALSE	canonical	0	0	junction_4	320.696897396903	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9390	False	NA	1	True	TATAAA	-45	NA	26494435	26483068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
ES_00031938	chr2	-	750	4	Intergenic	novelGene_2186	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	46	junction_3	6.37704215656966	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTTTGCTGTCAGCAC	NA	False	NA	2	True	AATAAA	-24	NA	26530256	26527179	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_26527646_26528052_26528108_26529441_26529484_26530069
ES_00031940	chr2	-	3957	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	0	-986	0	-460	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGCACAATGGTCCCTT	NA	False	NA	NA	False	AAAAAG	-34	NA	26792891	26779460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
ES_00031942	chr2	-	3510	3	FSM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	0	-4	0	4	multi-exon	FALSE	canonical	3	168	junction_1	2.5	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTCTTGATTAGT	NA	False	NA	0	True	AATAAA	-22	NA	26800689	26795269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26798314_26799004_26799086_26800304
ES_00031943	chr2	-	1156	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	0	-5	0	3	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTCTGAAACCGTTTT	NA	False	NA	0	True	AATAAA	-24	NA	26806480	26803389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ES_00031946	chr2	-	2927	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	354	0	-191	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823586	26810051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ES_00031948	chr2	-	2260	8	FSM	ENSMUSG00000052406.15	ENSMUST00000064244.11	2281	8	26	-5	26	5	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGAAGTTCATGTTTT	NA	False	NA	-1	True	AATAAA	-19	NA	26854372	26843569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
ES_00031950	chr2	-	624	2	FSM	ENSMUSG00000052406.15	ENSMUST00000139635.2	600	2	0	-24	0	24	multi-exon	FALSE	canonical	3	202	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCCTCTGACTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	26846331	26844988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26845582_26846300
ES_00031951	chr2	-	575	2	FSM	ENSMUSG00000052406.15	ENSMUST00000128130.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGGGTGCAGCAGGAAAA	NA	False	NA	NA	False	ATTAAA	-43	NA	26850278	26848047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26848580_26850235
ES_00031953	chr2	-	2921	3	FSM	ENSMUSG00000009216.8	ENSMUST00000151224.3	2959	3	36	2	36	-2	multi-exon	FALSE	canonical	1	1	junction_2	1	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGGTGCGTGGCTGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	27032467	27000393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_27002903_27003559_27003676_27032171
ES_00031956	chr2	-	5223	28	FSM	ENSMUSG00000009621.19	ENSMUST00000056176.8	5221	28	0	-2	0	2	multi-exon	FALSE	canonical	1	3	junction_2	15.8636162645109	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTTAGCCTTCTGTGTC	NA	False	NA	0	True	AATAAA	-21	NA	27317045	27152113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_27154224_27157241_27157397_27158162_27158250_27158910_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27169202_27169220_27171912_27172002_27172300_27172403_27173320_27173431_27175644_27175778_27176450_27176537_27178617_27178705_27181361_27181431_27181820_27181917_27182681_27182782_27186134_27186236_27187679_27187749_27189385_27189485_27192019_27192123_27208939_27209009_27226691_27226751_27276501_27276619_27316287
ES_00031957	chr2	-	5162	27	NIC	ENSMUSG00000009621.19	novel	5221	28	NA	NA	-26	2	combination_of_known_splicesites	FALSE	canonical	3	35	junction_23	9.47466256756571	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTTAGCCTTCTGTGTC	NA	False	NA	0	True	AATAAA	-21	NA	27317071	27152113	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_27154224_27157241_27157397_27158910_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27169202_27169220_27171912_27172002_27172300_27172403_27173320_27173431_27175644_27175778_27176450_27176537_27178617_27178705_27181361_27181431_27181820_27181917_27182681_27182782_27186134_27186236_27187679_27187749_27189385_27189485_27192019_27192123_27208939_27209009_27226691_27226751_27276501_27276619_27316287
ES_00031959	chr2	-	5289	13	FSM	ENSMUSG00000026918.17	ENSMUST00000113941.9	5289	13	0	0	0	0	multi-exon	TRUE	canonical	2	24	junction_5	87.0507514805779	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATAAAAAGGGAAAGAAG	NA	False	NA	5	True	NA	NA	NA	27365685	27335611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27343411_27343463_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
ES_00031961	chr2	-	2893	8	FSM	ENSMUSG00000026918.17	ENSMUST00000130932.2	2893	8	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	33.5747718699986	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGAAAAGAAGAAGAAA	NA	False	NA	-4	True	NA	NA	NA	27365665	27343007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
ES_00031964	chr2	-	2739	12	FSM	ENSMUSG00000026816.15	ENSMUST00000028157.9	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_7	20.5992858738452	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGTTTGATGCCCT	NA	False	NA	-49	True	AATAAA	-22	NA	28473291	28456322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28457190_28457619_28457797_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
ES_00031965	chr2	-	698	5	FSM	ENSMUSG00000026809.16	ENSMUST00000124840.2	699	5	0	1	0	-1	multi-exon	FALSE	canonical	3	6	junction_1	1.22474487139159	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGCCTGGCTTGGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	28589695	28582096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28582165_28582923_28583072_28583635_28583839_28585918_28586096_28589593
ES_00031967	chr2	-	7050	6	NIC	ENSMUSG00000035666.15	novel	7127	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	92.4588557143122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGATTTTTTTTTATTCTT	NA	False	NA	1	True	AATAAA	-25	NA	28730298	28712310	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28726036_28726140_28729894
ES_00031968	chr2	-	7208	6	FSM	ENSMUSG00000035666.15	ENSMUST00000171404.8	7127	6	-81	0	-81	0	multi-exon	FALSE	canonical	2	8	junction_4	103.395551161547	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGATTTTTTTTTATTCTT	NA	False	NA	1	True	AATAAA	-25	NA	28730453	28712310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28726422_28726529_28729894
ES_00031971	chr2	-	3930	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTGGTGTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29677672	29664695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
ES_00031972	chr2	-	2255	10	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	69.5021093915612	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677634	29666121	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_29666217_29666255_29666457_29666690_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ES_00031973	chr2	-	3408	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29678514	29666121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ES_00031977	chr2	-	855	2	FSM	ENSMUSG00000039715.9	ENSMUST00000139145.2	494	2	0	-361	0	-5	multi-exon	FALSE	canonical	3	175	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACCTGAGAGCCCCAAG	NA	False	NA	-5	True	NA	NA	NA	29922517	29921562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29921985_29922084
ES_00031978	chr2	-	1814	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938893	29921557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
ES_00031979	chr2	-	1194	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	0	-7	0	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983647	29980955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
ES_00031980	chr2	-	1321	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	0	-156	0	156	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGGTTACGTGGAGGCT	NA	False	NA	NA	False	ATTAAA	-15	NA	29983660	29980799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
ES_00031982	chr2	-	4184	16	FSM	ENSMUSG00000039686.15	ENSMUST00000113677.3	4189	16	5	0	2	0	multi-exon	FALSE	canonical	3	68	junction_8	7.41889479639656	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGAGTGGTGTCTTTTCTT	NA	False	NA	-2	True	AATACA	-17	NA	30014589	29987294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29988856_29990325_29990429_29991047_29991146_29991776_29991966_29992740_29992857_29993328_29993449_29993550_29993593_29994818_29995035_29997506_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673_30001111_30001193_30001345_30003257_30003494_30014287
ES_00031983	chr2	-	2012	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	0	-2	0	0	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068471	30063482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
ES_00031984	chr2	-	1805	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068462	30063482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
ES_00031987	chr2	-	2065	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	-31	-8	15	1	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTTCTCTCTTCCTTTG	NA	False	NA	-2	True	AATAAA	-26	NA	30095844	30075134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
ES_00031988	chr2	-	1942	14	NIC	ENSMUSG00000039648.15	novel	1876	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	49.6595510039827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095827	30075135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
ES_00031990	chr2	-	1771	13	NNC	ENSMUSG00000039648.15	novel	1876	13	NA	NA	35	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	44.4605786686988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACCCTCAAGGCAGCTT	NA	False	NA	-15	True	AATAAA	-13	NA	30095752	30075147	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_30075596_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
ES_00031992	chr2	-	2104	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	2248	False	NA	24	True	AATAAA	-44	NA	30176346	30174242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30174200_30176300
ES_00031993	chr2	-	1769	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	0	-20	0	20	multi-exon	FALSE	canonical	3	26	junction_3	118.792269553979	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCTGAAAGTGGATGGA	NA	False	NA	10	True	AATAAA	-36	NA	30249252	30234800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ES_00031994	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249328	30234820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ES_00031995	chr2	-	1716	10	FSM	ENSMUSG00000026860.17	ENSMUST00000113620.10	1694	10	0	-22	0	20	multi-exon	FALSE	canonical	3	12	junction_5	106.475639131188	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCTGAAAGTGGATGGA	NA	False	NA	10	True	AATAAA	-36	NA	30249277	30234800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ES_00031999	chr2	-	2683	1	FSM	ENSMUSG00000089762.4	ENSMUST00000065134.4	2683	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTATGGTGGTTCCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	30364231	30361548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30361500_30364200
ES_00032000	chr2	-	1629	7	FSM	ENSMUSG00000044320.15	ENSMUST00000050003.9	1672	7	0	43	0	-43	multi-exon	FALSE	canonical	3	15	junction_6	6.6248689714506	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCTCAGCCTAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	30691719	30685355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
ES_00032002	chr2	-	3042	5	ISM	ENSMUSG00000039483.11	ENSMUST00000129628.8	784	6	11	-1372	0	-1	intron_retention	FALSE	canonical	3	80	junction_2	14.4460202131937	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTGTCTTTGTATGAC	1761	False	NA	-20	True	ATTAAA	-18	NA	30718266	30713109	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934
ES_00032004	chr2	-	3649	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	-2	0	2	multi-exon	FALSE	canonical	3	78	junction_1	10.5	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGGTCATGATGTCTC	8411	False	NA	NA	False	NA	NA	NA	30793309	30779480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30782839_30790878_30790962_30793101
ES_00032005	chr2	-	3488	3	FSM	ENSMUSG00000026849.19	ENSMUST00000123762.2	455	3	-1306	-1727	-1306	1301	multi-exon	FALSE	canonical	3	466	junction_1	37	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCCAGAGCCTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	30855193	30849337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30851210_30853486_30853615_30853705
ES_00032006	chr2	-	1395	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	7	-1	7	1	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGGCTTTGTGTGTCTTT	NA	False	NA	-7	True	TTTAAA	-31	NA	30857938	30850637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
ES_00032007	chr2	-	1605	4	FSM	ENSMUSG00000026849.19	ENSMUST00000137694.8	1605	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	239.033238042095	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATAACGTTTTATT	NA	False	NA	-61	True	NA	NA	NA	30857884	30850691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101
ES_00032011	chr2	-	1278	9	NNC	ENSMUSG00000026851.10	novel	1984	9	NA	NA	42	-659	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_7	112.790112044452	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCCTGTCTTCTAATGT	NA	False	NA	NA	False	ATTAAA	-14	NA	30871911	30862847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871499_30871555_30871789
ES_00032012	chr2	-	854	4	FSM	ENSMUSG00000026851.10	ENSMUST00000152007.2	854	4	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	14.0554457615387	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAGTCTCCCACCCCTGG	NA	False	NA	NA	False	NA	NA	NA	30870518	30865903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30866101_30867903_30867982_30868906_30868978_30870010
ES_00032014	chr2	-	8789	15	FSM	ENSMUSG00000075415.14	ENSMUST00000100208.9	1859	15	-137	-6793	0	0	multi-exon	FALSE	canonical	3	84	junction_6	25.508001945768	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTCTCTGTTGTATGA	4837	False	NA	-5	True	AATAAA	-18	NA	31031951	30916217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ES_00032015	chr2	-	4726	16	NIC	ENSMUSG00000075415.14	novel	4726	17	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	84	junction_7	27.5474540061731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTCTCTGTTGTATGA	4754	False	NA	-5	True	AATAAA	-18	NA	31032034	30916217	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_30918896_30923041_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ES_00032018	chr2	-	1910	9	FSM	ENSMUSG00000075415.14	ENSMUST00000113552.9	1910	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	13.559475469206	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTGTGTCTTCTT	4837	False	NA	-13	True	NA	NA	NA	31031951	30943246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ES_00032019	chr2	-	921	2	FSM	ENSMUSG00000087269.2	ENSMUST00000133550.2	920	2	0	-1	0	1	multi-exon	FALSE	canonical	3	14	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCGCCGGGC	8886	False	NA	NA	False	NA	NA	NA	31042303	31040651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_31041263_31041993
ES_00032020	chr2	-	4010	2	FSM	ENSMUSG00000050592.9	ENSMUST00000056406.7	4107	2	97	0	97	0	multi-exon	FALSE	canonical	3	11	junction_1	0	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTCTGGTGGCAAT	NA	False	NA	NA	False	AATAAA	-35	NA	31973698	31956878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_31959786_31972595
ES_00032021	chr2	-	2004	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	1	0	1	0	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150170	32145013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ES_00032024	chr2	-	930	6	FSM	ENSMUSG00000044627.12	ENSMUST00000140406.8	919	6	0	-11	0	11	multi-exon	FALSE	canonical	2	10	junction_2	1714.39027062102	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTCTACTAGCCCG	NA	False	NA	-1	True	AATAAA	-25	NA	32177947	32168816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32169144_32170238_32170523_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ES_00032025	chr2	-	707	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	-119	-8	-49	8	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCCTTGTCTCTACTAGC	NA	False	NA	-4	True	AATAAA	-22	NA	32178136	32168819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
ES_00032026	chr2	-	786	5	FSM	ENSMUSG00000044627.12	ENSMUST00000050410.11	775	5	0	-11	0	11	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTCTACTAGCCCG	NA	False	NA	-1	True	AATAAA	-25	NA	32178087	32168816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ES_00032027	chr2	-	667	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	-44	-101	-38	-1	multi-exon	FALSE	canonical	3	43	junction_4	1473.86522026269	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTTCTGATCCTTGTC	NA	False	NA	-13	True	AATAAA	-13	NA	32178125	32168828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
ES_00032029	chr2	-	619	3	NNC	ENSMUSG00000039195.5	novel	2618	2	NA	NA	0	47528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGGGCAGCAGATCCC	NA	False	NA	NA	False	NA	NA	NA	32271874	32219580	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_32219602_32269118_32269546_32271703
ES_00032030	chr2	-	2510	2	FSM	ENSMUSG00000039195.5	ENSMUST00000146423.2	2618	2	0	108	0	-108	multi-exon	FALSE	canonical	1	5	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCTCAGCTCGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	32271874	32267216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32269546_32271693
ES_00032031	chr2	-	681	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	-8	7	-8	-7	multi-exon	FALSE	canonical	3	268	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCCCCTTCTTCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	32271958	32269119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32269546_32271703
ES_00032032	chr2	-	4897	11	FSM	ENSMUSG00000026819.16	ENSMUST00000028160.15	3294	11	-1379	-224	-1356	224	multi-exon	FALSE	canonical	3	9	junction_7	31.7200252206709	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCGCCTCAGAGCTTTGT	6797	False	NA	NA	False	NA	NA	NA	32342813	32304274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32310667_32310704_32311314_32311403_32311484_32311612_32341078
ES_00032033	chr2	-	3281	10	FSM	ENSMUSG00000026819.16	ENSMUST00000113310.9	3278	10	0	-3	0	0	multi-exon	FALSE	canonical	3	77	junction_4	7.53919797941661	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGGAGCCAGGGTTTTTC	8153	False	NA	-6	True	AATAAA	-17	NA	32341457	32304498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484_32311612_32341078
ES_00032036	chr2	-	1733	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602796	32597449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
ES_00032037	chr2	-	260	1	FSM	ENSMUSG00000105841.3	ENSMUST00000198213.3	73	1	-193	6	-193	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGCGGCGGCGGAGGCTC	NA	False	NA	NA	False	NA	NA	NA	32603177	32602917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32602900_32603200
ES_00032038	chr2	-	3889	19	FSM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	0	3	0	2	multi-exon	FALSE	canonical	3	22	junction_3	6.44827472379863	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATGAAGAGCTTCTTTT	5149	False	NA	NA	False	AATAAA	-20	NA	32737257	32677616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32679650_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
ES_00032039	chr2	-	3616	20	FSM	ENSMUSG00000026797.17	ENSMUST00000077458.7	3616	20	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	11.5751189843295	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGTGCCTGGGCCCAC	5192	False	NA	-23	True	AATAAA	-15	NA	32737214	32677972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32679650_32684599_32684726_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
ES_00032043	chr2	-	2103	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	5	0	5	0	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTCAGTGGAGCCAGA	3955	False	NA	-13	True	AATAAA	-15	NA	32872089	32863001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
ES_00032046	chr2	-	3327	28	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	5	-3886	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	18.5239251366749	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTTTAAAGGGGGGT	NA	False	NA	NA	False	NA	NA	NA	33020615	32880271	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
ES_00032048	chr2	-	201	1	Genic_Genomic	ENSMUSG00000038860.16	novel	NA	NA	NA	NA	-798	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1001	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTAAGATTAAGATTAATT	NA	False	NA	NA	False	NA	NA	NA	32899138	32898937	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_32898900_32899100
ES_00032055	chr2	-	6629	3	FSM	ENSMUSG00000068966.11	ENSMUST00000113158.8	6602	3	-26	-1	-26	1	multi-exon	FALSE	canonical	3	36	junction_2	5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTGGTCTCTGTGTTC	NA	False	NA	1	True	AATAAA	-19	NA	33321362	33296118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33302508_33318112_33318233_33321242
ES_00032056	chr2	-	4927	2	FSM	ENSMUSG00000026788.14	ENSMUST00000095035.3	4925	2	0	-2	0	2	multi-exon	FALSE	canonical	3	37	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTTTTCACTCATGT	1265	False	NA	1	True	AATAAA	-27	NA	33352365	33340296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33345136_33352277
ES_00032057	chr2	-	5064	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	0	-3236	0	1	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTTTTCACTCATG	NA	False	NA	0	True	AATAAA	-26	NA	33358517	33340297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
ES_00032058	chr2	-	5000	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	0	-2	0	2	multi-exon	FALSE	canonical	3	44	junction_1	8.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTTTTCACTCATGT	NA	False	NA	1	True	AATAAA	-27	NA	33358544	33340296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33345136_33354925_33354987_33358444
ES_00032059	chr2	-	5036	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	54	-4603	0	2	multi-exon	TRUE	canonical	3	37	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTTTTCACTCATGT	NA	False	NA	1	True	AATAAA	-27	NA	33358517	33340296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33345136_33354925_33355050_33358444
ES_00032062	chr2	-	4994	10	FSM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	0	4	0	-4	multi-exon	FALSE	canonical	3	7	junction_2	24.5990063033268	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCCCCAGTTTGCTGTT	3749	False	NA	-5	True	AATAAA	-16	NA	33777958	33619968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33623544_33642320_33642381_33645001_33645058_33692756_33692852_33715059_33715183_33717693_33717824_33724548_33724646_33730170_33730279_33764349_33764473_33777331
ES_00032064	chr2	-	531	3	FSM	ENSMUSG00000038740.10	ENSMUST00000146892.2	520	3	0	-11	0	11	multi-exon	FALSE	canonical	3	76	junction_1	8	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTTTTGATGAATTGGG	4213	False	NA	6	True	AATAAA	-26	NA	33777494	33763614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33763860_33764349_33764473_33777331
ES_00032065	chr2	-	2729	9	FSM	ENSMUSG00000038718.16	ENSMUST00000040638.15	2587	9	124	-266	0	0	multi-exon	FALSE	canonical	3	23	junction_3	7.22733526273688	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCATGTGTGTCTCTGT	956	False	NA	NA	False	AATAAA	-24	NA	34261932	34061468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34062986_34065876_34065967_34066760_34066874_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
ES_00032066	chr2	-	2871	8	FSM	ENSMUSG00000038718.16	ENSMUST00000113132.9	2734	8	-135	-2	-129	2	multi-exon	FALSE	canonical	3	6	junction_2	11.7577590534584	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCATGTGTGTCTCTGTTC	703	False	NA	NA	False	AATAAA	-26	NA	34262185	34061466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34062986_34065876_34065967_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
ES_00032069	chr2	-	6360	26	FSM	ENSMUSG00000026867.20	ENSMUST00000028224.15	5695	26	136	-801	0	0	multi-exon	FALSE	canonical	2	111	junction_18	27.1558465159899	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTGCAGGGCTCTTTT	5916	False	NA	-7	True	AATAAA	-15	NA	34644437	34566195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607327_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
ES_00032070	chr2	-	5758	26	FSM	ENSMUSG00000026867.20	ENSMUST00000113099.10	5758	26	0	0	0	0	multi-exon	FALSE	canonical	2	81	junction_18	31.5772069695849	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	5780	False	NA	NA	False	NA	NA	NA	34644573	34566996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
ES_00032073	chr2	-	2863	8	FSM	ENSMUSG00000070953.14	ENSMUST00000145903.8	2968	8	0	105	0	-105	multi-exon	FALSE	canonical	3	258	junction_7	62.9123134503371	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGCCACCAAGCTGG	2637	False	NA	NA	False	NA	NA	NA	34689924	34667672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
ES_00032074	chr2	-	1431	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCACATTTGTATTA	2821	False	NA	-42	True	NA	NA	NA	34689740	34669248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
ES_00032078	chr2	-	205	2	Antisense	novelGene_ENSMUSG00000081904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	256	junction_1	0	182	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATCTACTTAGACGGCCA	3920	False	NA	NA	False	AAAAAG	-4	NA	34721523	34679590	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_34679741_34721468
ES_00032079	chr2	-	2030	7	FSM	ENSMUSG00000035949.16	ENSMUST00000028220.10	2030	7	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	71.5238887831658	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGAGTCTGCTGGTTG	9358	False	NA	NA	False	NA	NA	NA	34716085	34695189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973
ES_00032080	chr2	-	2087	8	NIC	ENSMUSG00000035949.16	novel	1838	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_6	128.342971632057	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	9230	False	NA	-3	True	ATTAAA	-15	NA	34716213	34695349	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715691_34716083_34716183
ES_00032081	chr2	-	1926	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	0	-3	0	0	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	9201	False	NA	-3	True	ATTAAA	-15	NA	34716242	34695349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
ES_00032082	chr2	-	1839	8	FSM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	0	-1	0	0	multi-exon	FALSE	canonical	3	82	junction_6	107.582336764329	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	9196	False	NA	-3	True	ATTAAA	-15	NA	34716247	34695349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715973_34716083_34716183
ES_00032083	chr2	-	2260	7	FSM	ENSMUSG00000035949.16	ENSMUST00000113075.8	2260	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_6	77.5026881254235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATAAGTTAACCTGTAG	9230	False	NA	NA	False	AATAAA	-18	NA	34716213	34696264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
ES_00032084	chr2	-	1898	4	FSM	ENSMUSG00000035949.16	ENSMUST00000131534.8	1930	4	32	0	32	0	multi-exon	FALSE	canonical	3	239	junction_3	100.641277151409	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCAGCTCCAATATGTT	9152	False	NA	NA	False	NA	NA	NA	34716291	34701850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34703022_34712569_34713080_34715973_34716083_34716183
ES_00032086	chr2	-	209	2	Antisense	novelGene_ENSMUSG00000081904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	970	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTAGGGAAGTTGAGAC	3920	False	NA	NA	False	AAAAAG	-4	NA	34721523	34710487	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_34710642_34721468
ES_00032087	chr2	-	4405	1	FSM	ENSMUSG00000035949.16	ENSMUST00000201806.2	4405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	9224	False	NA	NA	False	NA	NA	NA	34716219	34711814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34711800_34716200
ES_00032090	chr2	-	835	1	FSM	ENSMUSG00000026869.13	ENSMUST00000202917.2	1103	1	407	-139	407	139	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCTGGGAACCTAGTAGG	9968	False	NA	NA	False	NA	NA	NA	34761815	34760980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34761000_34761800
ES_00032091	chr2	-	3796	15	FSM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	-50	-5	0	5	multi-exon	FALSE	canonical	3	18	junction_3	4.03871569806491	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCTTGGAGCTGGCT	3637	False	NA	-12	True	ATTAAA	-33	NA	34804038	34783763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801815_34803952
ES_00032092	chr2	-	2141	11	FSM	ENSMUSG00000026875.15	ENSMUST00000113064.8	2325	11	184	0	-3	0	multi-exon	FALSE	canonical	1	1	junction_10	3.16385840391127	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTCAGGTGTGAGACCA	NA	False	NA	NA	False	AAAACA	-23	NA	34851600	34833269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34834104_34835409_34835559_34836693_34836872_34838152_34838564_34839050_34839117_34846207_34846293_34847970_34848119_34848524_34848624_34849486_34849526_34850832_34850900_34851535
ES_00032094	chr2	-	3341	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	-260	0	260	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGATTGTCATAGTGCAG	9552	False	NA	NA	False	AATAAA	-19	NA	35091132	35069956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ES_00032096	chr2	-	2842	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	-54	-1	-54	1	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGAGTCTTGTTTCTG	NA	False	NA	1	True	AATAAA	-21	NA	35227042	35203996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
ES_00032097	chr2	-	3253	6	FSM	ENSMUSG00000035778.18	ENSMUST00000079424.11	3254	6	1	0	1	0	multi-exon	TRUE	canonical	3	18	junction_3	29.2054789380349	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35322644	35290190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525
ES_00032099	chr2	-	3535	9	FSM	ENSMUSG00000035778.18	ENSMUST00000102794.8	3606	9	75	-4	75	0	multi-exon	FALSE	canonical	3	26	junction_8	26.0836994117016	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35351386	35290190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
ES_00032102	chr2	-	3402	8	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	53	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	27.4531140198659	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	1218	False	NA	-1	True	AATAAA	-15	NA	35335792	35290192	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35335707
ES_00032103	chr2	-	4270	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_8	26.4548554144603	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35353271	35290190	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35352356
ES_00032105	chr2	-	2617	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026785	36006090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ES_00032106	chr2	-	668	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	-38	-63	-38	63	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTCAGACAATGGAGAGAT	NA	False	NA	NA	False	AATAAA	-40	NA	36698442	36697774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_36697800_36698400
ES_00032107	chr2	-	2773	5	FSM	ENSMUSG00000009030.15	ENSMUST00000147703.3	685	5	0	-2088	0	4	multi-exon	FALSE	canonical	2	4	junction_4	84.8130296593631	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATATTAGATATTTGAAT	NA	False	NA	-3	True	AATAAA	-24	NA	37249208	37240081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363_37248411_37249154
ES_00032109	chr2	-	3756	1	ISM	ENSMUSG00000075376.11	ENSMUST00000112934.8	8948	22	49079	0	3747	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTTCTTAGTGTCAAT	NA	False	NA	0	True	AATAAA	-21	NA	37263836	37260080	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_37260100_37263800
ES_00032110	chr2	-	8803	20	FSM	ENSMUSG00000075376.11	ENSMUST00000100143.10	8799	20	0	-4	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.50289180073869	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTTCTTAGTGTCAAT	NA	False	NA	0	True	AATAAA	-21	NA	37304833	37260080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37265441_37266653_37266803_37266900_37267009_37267145_37267281_37267366_37267449_37267862_37267948_37268319_37268534_37268869_37269017_37271881_37272050_37272794_37273229_37275257_37275473_37279596_37279903_37288255_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527
ES_00032111	chr2	-	8948	22	FSM	ENSMUSG00000075376.11	ENSMUST00000112934.8	8948	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	12.7563953992798	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTTCTTAGTGTCAAT	NA	False	NA	0	True	AATAAA	-21	NA	37312915	37260080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37265441_37266672_37266803_37266900_37267009_37267145_37267281_37267366_37267449_37267862_37267948_37268319_37268534_37268869_37269017_37271881_37272050_37272794_37273229_37275257_37275473_37279596_37279903_37288255_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527_37304825_37309443_37309480_37312778
ES_00032114	chr2	-	5272	2	FSM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	0	-5	0	5	multi-exon	FALSE	canonical	3	22	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCATTGACTTCTTATT	NA	False	NA	7	True	AATAAA	-19	NA	37333133	37322174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37327012_37332698
ES_00032116	chr2	-	16344	17	FSM	ENSMUSG00000026915.17	ENSMUST00000028279.10	16348	17	0	4	0	-4	multi-exon	FALSE	canonical	3	591	junction_8	57.680152565679	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGGCCTGGACTGTTCT	NA	False	NA	-4	True	AATAAA	-21	NA	37537297	37459883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127
ES_00032117	chr2	-	3144	18	FSM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_8	55.9640270025228	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGTTCTTGTGGCCT	NA	False	NA	-4	True	AATAAA	-14	NA	37593287	37473167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
ES_00032120	chr2	-	4342	22	FSM	ENSMUSG00000035392.18	ENSMUST00000102787.10	4342	22	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	9.9979589753844	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACCGTTTAAGAAAACAT	NA	False	NA	1	True	AATAAA	-18	NA	38177387	37689002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38026937_38026988_38049818_38049863_38133413_38133485_38177124
ES_00032121	chr2	-	625	6	FSM	ENSMUSG00000035392.18	ENSMUST00000143095.8	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	22.1214827712791	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTGGTAAGTGGGGCAA	NA	False	NA	NA	False	NA	NA	NA	38177370	37933357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37933432_37938736_37938807_38016540_38016661_38049818_38049863_38133413_38133485_38177124
ES_00032122	chr2	-	224	1	Intergenic	novelGene_2237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGCAAAGGCTCAGAATG	5253	False	NA	NA	False	NA	NA	NA	38224788	38224564	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_38224600_38224800
ES_00032124	chr2	-	1026	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	139	-5	-28	5	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGTAATGTTGGAACTG	2352	False	NA	-13	True	AATAAA	-29	NA	38533960	38478042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ES_00032125	chr2	-	1907	6	FSM	ENSMUSG00000026750.7	ENSMUST00000151981.3	2849	6	0	942	0	-942	multi-exon	FALSE	canonical	3	1531	junction_3	114.999130431495	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATACATAGAGAAAAATTA	2380	False	NA	NA	False	NA	NA	NA	38533932	38502124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ES_00032126	chr2	-	6137	11	FSM	ENSMUSG00000063972.14	ENSMUST00000076275.11	5941	11	-189	-7	-131	3	multi-exon	FALSE	canonical	3	61	junction_5	17.3677862722916	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGTGAAGCTTATCT	NA	False	NA	1	True	AATAAA	-23	NA	38816418	38613378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38617928_38619494_38619648_38621057_38621180_38628898_38629154_38630391_38630620_38632818_38632974_38638847_38638904_38650198_38650442_38762606_38762652_38775207_38775250_38816129
ES_00032127	chr2	-	6142	11	NNC	ENSMUSG00000063972.14	novel	5941	11	NA	NA	-141	1	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_5	22.851914580621	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTCTGTGAAGCTTAT	NA	False	NA	-1	True	AATAAA	-21	NA	38816428	38613380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_38617928_38619494_38619648_38621057_38621180_38628898_38629154_38630391_38630617_38632818_38632974_38638847_38638904_38650198_38650442_38762606_38762652_38775207_38775250_38816129
ES_00032128	chr2	-	1462	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	-517	1	-517	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	4792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	-10	True	AATAAA	-18	NA	38896153	38891592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
ES_00032129	chr2	-	541	3	FSM	ENSMUSG00000062997.7	ENSMUST00000152441.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	39700	junction_1	236.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGATGACAACGACAATAA	NA	False	NA	-48	True	NA	NA	NA	38895055	38891630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38891778_38894118_38894201_38894743
ES_00032130	chr2	-	4491	23	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	0	14	intron_retention	FALSE	canonical	3	23	junction_1	8.80974291610907	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTGATAAAGCTCAAGGTA	NA	False	NA	NA	False	ATTAAA	-31	NA	38955553	38906500	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
ES_00032132	chr2	-	386	4	FSM	ENSMUSG00000026754.17	ENSMUST00000154210.3	386	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	10.3387082795139	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTCTCCGTATAGCAC	NA	False	NA	NA	False	NA	NA	NA	38909573	38907824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38907894_38908350_38908502_38909001_38909089_38909494
ES_00032135	chr2	-	10709	18	FSM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.37403068228235	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATTTCTTTAGT	NA	False	NA	NA	False	AATAAA	-16	NA	39080746	38956225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38965169_38970088_38970190_38970385_38970560_38973549_38973623_38984714_38984797_38989387_38989488_38992332_38992412_38993214_38993317_38993675_38993778_38996931_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
ES_00032136	chr2	-	4133	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	0	-18	0	18	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAATTCCCTGAGAAGAA	NA	False	NA	NA	False	AAAAAG	-44	NA	39116463	39084347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ES_00032138	chr2	-	935	1	Genic_Genomic	ENSMUSG00000081999.4	novel	NA	NA	NA	NA	869	447	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTCTCCTTGTGCCTA	NA	False	NA	NA	False	TTTAAA	-33	NA	41877972	41877037	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_41877000_41878000
ES_00032139	chr2	-	961	1	FSM	ENSMUSG00000080994.3	ENSMUST00000119418.3	935	1	-72	46	-72	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAGGGTGGTGGACCTCA	NA	False	NA	NA	False	NA	NA	NA	43409482	43408521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_43408500_43409500
ES_00032140	chr2	-	2543	11	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	2	-2	combination_of_known_junctions	TRUE	canonical	3	29	junction_10	9.30644937664198	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATTCATTTGCGTCTAA	NA	False	NA	-8	True	AATAAA	-23	NA	44817274	44454428	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302_44750339_44817153
ES_00032141	chr2	-	4066	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGATGAAGCATTTTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	48839288	48792835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ES_00032143	chr2	-	1477	14	FSM	ENSMUSG00000026761.13	ENSMUST00000154784.8	1477	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	114.388107132055	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCACTTAGTATGTT	NA	False	NA	NA	False	TATAAA	-12	NA	48839243	48795327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ES_00032146	chr2	-	2133	10	FSM	ENSMUSG00000026761.13	ENSMUST00000141441.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	49.1515670473473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTTTTTTACTGCAG	NA	False	NA	NA	False	AATAAA	-15	NA	48839246	48801415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ES_00032148	chr2	-	1157	7	FSM	ENSMUSG00000026761.13	ENSMUST00000090976.10	1153	7	0	-4	0	4	multi-exon	FALSE	canonical	3	33	junction_1	170.808290847436	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACAGACTTTGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	48839246	48821965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_48822610_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ES_00032151	chr2	-	1651	7	ISM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	24	0	2	0	intron_retention	FALSE	canonical	3	533	junction_6	61.03664655125	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186705	50169892	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263
ES_00032152	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186729	50169892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
ES_00032156	chr2	-	864	1	FSM	ENSMUSG00000083449.2	ENSMUST00000122240.2	864	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTATGCCAAGTAGATC	NA	False	NA	NA	False	NA	NA	NA	50412999	50412135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_50412100_50413000
ES_00032162	chr2	-	4725	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	0	-8	0	8	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGAGATGTTTTTCTT	NA	False	NA	NA	False	TATAAA	-20	NA	52632212	52581667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
ES_00032163	chr2	-	7315	26	FSM	ENSMUSG00000061136.17	ENSMUST00000210789.3	3773	26	80	-3622	0	88	multi-exon	FALSE	canonical	3	232	junction_25	95.4321874421833	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTTGCTTAAAAAGTTA	NA	False	NA	74	True	NA	NA	NA	53081216	53024627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
ES_00032164	chr2	-	7374	26	FSM	ENSMUSG00000061136.17	ENSMUST00000076313.14	7374	26	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_25	70.0256410181299	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTTTCTCTTTAAGTGT	NA	False	NA	-14	True	ATTAAA	-17	NA	53081237	53024715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
ES_00032165	chr2	-	3295	26	NNC	ENSMUSG00000061136.17	novel	3773	26	NA	NA	9	-185	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	120.929824278381	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACTGCTGTAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	53081228	53028671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
ES_00032166	chr2	-	7365	26	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	102.895628672942	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTTTCTCTTTAAGTGT	NA	False	NA	-14	True	ATTAAA	-17	NA	53081216	53024715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
ES_00032169	chr2	-	684	1	FSM	ENSMUSG00000083287.5	ENSMUST00000121574.2	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGTAAATGATTTGAAAA	NA	False	NA	NA	False	AATACA	-11	NA	53586816	53586132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_53586100_53586800
ES_00032172	chr2	-	417	1	FSM	ENSMUSG00000081157.2	ENSMUST00000118837.2	417	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTGACCTGGGGAAGT	NA	False	NA	NA	False	NA	NA	NA	59395028	59394611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_59394600_59395000
ES_00032174	chr2	-	239	2	Antisense	novelGene_ENSMUSG00000035168.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTACTTCCCCAATAA	NA	False	NA	NA	False	NA	NA	NA	59532893	59475798	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_59475837_59532692
ES_00032175	chr2	-	2026	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	20.6164982477626	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTAAGTGTGTTCTTA	NA	False	NA	4	True	AATAAA	-24	NA	59712918	59682703	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
ES_00032181	chr2	-	7897	35	FSM	ENSMUSG00000026987.17	ENSMUST00000112550.8	7895	35	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_34	50.4484474265647	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTTTTTTAGGGGTG	NA	False	NA	-2	True	AATAAA	-21	NA	59956041	59729704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737782_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59955806
ES_00032186	chr2	-	231	2	Intergenic	novelGene_2259	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	177	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAATGTCAACAACTTGC	8787	False	NA	NA	False	AATAAA	-22	NA	59995950	59967356	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_59967537_59995899
ES_00032188	chr2	-	450	2	FSM	ENSMUSG00000026987.17	ENSMUST00000134908.2	406	2	-43	-1	10	0	multi-exon	FALSE	canonical	3	22	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTAATTGACTTCTGC	9160	False	NA	NA	False	AATAAA	-17	NA	60040135	60036936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60037308_60040056
ES_00032189	chr2	-	1042	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	312	0	242	0	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4244	False	NA	-4	True	AATAAA	-15	NA	60114520	60082336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ES_00032190	chr2	-	713	1	FSM	ENSMUSG00000080198.3	ENSMUST00000116410.3	631	1	-28	-54	-28	54	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACTAGTGAGGTGTTAG	7847	False	NA	NA	False	AATAAA	-41	NA	60105946	60105233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60105200_60105900
ES_00032192	chr2	-	5172	35	FSM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	111.726541471596	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCAAGAGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	60213575	60124103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
ES_00032194	chr2	-	4436	14	FSM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_13	80.5716264093541	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTGTCGGTTTTTTG	NA	False	NA	0	True	AATAAA	-17	NA	60793536	60580536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
ES_00032195	chr2	-	2543	15	FSM	ENSMUSG00000026970.17	ENSMUST00000164147.8	2543	15	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	64.9034211858871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTTTAGTGTAGGTAGCT	NA	False	NA	NA	False	AATAAA	-15	NA	60711782	60582296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
ES_00032196	chr2	-	2468	15	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	4	-252	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	91.0514824095665	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTAGTAGGTGTTTTTAA	NA	False	NA	-5	True	AATAAA	-28	NA	60793532	60582548	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
ES_00032198	chr2	-	5268	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	806	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAAAACACAAGCATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	62242575	62160416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
ES_00032199	chr2	-	723	1	FSM	ENSMUSG00000082127.3	ENSMUST00000121365.3	205	1	4	-522	4	522	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGTACTGGAACAATAAA	NA	False	NA	NA	False	ATTAAA	-12	NA	64305289	64304566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_64304600_64305300
ES_00032203	chr2	-	831	2	FSM	ENSMUSG00000057182.16	ENSMUST00000155838.2	3502	2	873	1798	873	-1798	multi-exon	FALSE	canonical	3	11	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCGTGCTTTTCAGTTC	NA	False	NA	NA	False	AAGAAA	-9	NA	65328070	65325266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_65325741_65327713
ES_00032206	chr2	-	365	4	FSM	ENSMUSG00000057182.16	ENSMUST00000126837.2	365	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1.69967317119759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGCTTGCAGTGGCCT	4290	False	NA	NA	False	NA	NA	NA	65359748	65355091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_65355221_65356220_65356313_65356840_65356970_65359733
ES_00032207	chr2	-	424	3	FSM	ENSMUSG00000026994.10	ENSMUST00000153563.2	573	3	0	149	0	-149	multi-exon	FALSE	canonical	3	6	junction_1	0.5	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGATGCTTGCTCCCGTG	NA	False	NA	NA	False	NA	NA	NA	65932827	65926133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_65926369_65928056_65928207_65932788
ES_00032208	chr2	-	4544	8	FSM	ENSMUSG00000034848.18	ENSMUST00000169968.2	5807	8	0	1263	0	-1263	multi-exon	FALSE	canonical	2	7	junction_4	3.45820526768863	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTCTTCGTCCTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	66065482	66049621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632_66061763_66065386
ES_00032211	chr2	-	3535	18	FSM	ENSMUSG00000027030.16	ENSMUST00000102715.4	3536	18	0	1	0	-1	multi-exon	FALSE	canonical	3	28	junction_11	9.06874933675377	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGAGTCTCCTCCATTTC	NA	False	NA	NA	False	AATAAA	-18	NA	68302612	68040789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
ES_00032212	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036479	69024238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
ES_00032217	chr2	-	3757	14	FSM	ENSMUSG00000027086.17	ENSMUST00000073152.13	2865	14	-892	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	59.5439273976854	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7073	False	NA	NA	False	NA	NA	NA	69543842	69517158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
ES_00032218	chr2	-	2511	14	FSM	ENSMUSG00000027086.17	ENSMUST00000102706.4	2511	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	76.1245475885547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGCTCATAACCATCTAT	8110	False	NA	NA	False	NA	NA	NA	69542805	69517280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532793_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
ES_00032220	chr2	-	451	1	FSM	ENSMUSG00000082345.2	ENSMUST00000120658.2	433	1	0	-18	0	18	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGGAACTCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69568133	69567682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69567700_69568100
ES_00032222	chr2	-	867	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	0	-16	0	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6824	False	NA	-5	True	AATAAA	-34	NA	69715941	69701541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
ES_00032223	chr2	-	2090	4	FSM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_1	42.2926313518876	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCAAAAAGAAAAAGAAAGT	6817	False	NA	NA	False	NA	NA	NA	69715948	69708091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69709529_69711110_69711293_69711640_69711756_69715592
ES_00032224	chr2	-	4291	20	FSM	ENSMUSG00000041997.17	ENSMUST00000038584.9	4280	20	0	-11	0	11	multi-exon	TRUE	canonical	3	163	junction_17	29.5425886295749	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACTCAAAGAACCCTTA	NA	False	NA	NA	False	AATAAA	-33	NA	70656072	70542739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70600347_70600420_70617220_70617340_70655536
ES_00032228	chr2	-	6352	18	FSM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	0	-1	0	1	multi-exon	TRUE	canonical	3	27	junction_16	36.6501273382513	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCGTGTACATCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	71198093	71101405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233_71174377_71196870_71196925_71197856
ES_00032229	chr2	-	2777	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5267	420	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	-3	True	AATAAA	-17	NA	71164451	71104613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
ES_00032230	chr2	-	2622	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	5595	-52	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	39.6401292095523	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTCTCCTCCTGATGACT	NA	False	NA	-4	True	AATAAA	-17	NA	71168781	71105085	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71168501
ES_00032231	chr2	-	476	1	FSM	ENSMUSG00000086846.3	ENSMUST00000121697.2	381	1	-70	-25	-70	25	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCTACTGCCACCCTGT	NA	False	NA	NA	False	NA	NA	NA	71243331	71242855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_71242900_71243300
ES_00032232	chr2	-	4189	7	FSM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	0	-8	0	8	multi-exon	FALSE	canonical	3	107	junction_6	141.426561233109	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTAATTTCTTAGCTT	2885	False	NA	-4	True	ATTAAA	-33	NA	72810790	72766762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241_72809374_72809830_72809977_72810593
ES_00032233	chr2	-	3874	5	FSM	ENSMUSG00000027109.17	ENSMUST00000133615.2	3870	5	0	-4	0	0	multi-exon	FALSE	canonical	3	322	junction_4	47.8924576525365	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	4045	False	NA	-2	True	AATAAA	-22	NA	72809630	72766991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241
ES_00032234	chr2	-	3808	6	FSM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	184.227685215876	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	2905	False	NA	-2	True	AATAAA	-22	NA	72810770	72766991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809830_72809977_72810593
ES_00032237	chr2	-	984	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	-79	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	False	NA	-1	True	AATAAA	-19	NA	73044756	72967870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ES_00032238	chr2	-	2687	10	FSM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	134	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	34.2478259200042	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTGCCTATTGTGAAT	NA	False	NA	NA	False	AATAAA	-26	NA	73142911	73113448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73136771_73136783_73137198_73137273_73140800_73140896_73142760
ES_00032240	chr2	-	810	5	FSM	ENSMUSG00000075284.11	ENSMUST00000141264.8	717	5	-93	0	-93	0	multi-exon	FALSE	canonical	2	7	junction_4	18.0883249639097	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGTCTGCACAACCGGGGA	NA	False	NA	NA	False	NA	NA	NA	73316906	73267807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73316723
ES_00032245	chr2	-	4037	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722880	73646852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ES_00032246	chr2	-	4186	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112007.8	4195	14	0	9	0	2	multi-exon	FALSE	canonical	3	36	junction_11	109.668839867438	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	-8	True	AATAAA	-17	NA	73722975	73646861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
ES_00032247	chr2	-	3943	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722983	73646852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ES_00032248	chr2	-	4177	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	-39	-1742	0	0	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGTTTATAATTTGC	NA	False	NA	-14	True	AATAAA	-11	NA	73722938	73646867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ES_00032249	chr2	-	3650	13	FSM	ENSMUSG00000027104.19	ENSMUST00000143714.8	3641	13	0	-9	0	9	multi-exon	FALSE	canonical	3	36	junction_10	99.4706475409818	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAATTATAATTTATTTA	NA	False	NA	NA	False	AATAAA	-18	NA	73722957	73656693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
ES_00032251	chr2	-	698	6	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	0	7507	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1742.42915494433	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAAGAAAATGTGCC	NA	False	NA	NA	False	NA	NA	NA	73741626	73731283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_73731312_73738790_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
ES_00032252	chr2	-	708	6	NNC	ENSMUSG00000018770.10	novel	723	5	NA	NA	0	7507	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1924.31698012568	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAAGAAAATGTGCC	NA	False	NA	NA	False	NA	NA	NA	73741626	73731283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_73731312_73738790_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
ES_00032254	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741669	73738790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
ES_00032255	chr2	-	714	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741670	73738790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
ES_00032256	chr2	-	862	4	FSM	ENSMUSG00000018770.10	ENSMUST00000142768.8	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_3	1115.93219626762	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTGTTGTGTCTCTTT	NA	False	NA	-121	True	NA	NA	NA	73741626	73739074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73739722_73740207_73740286_73741298_73741405_73741595
ES_00032258	chr2	-	3321	14	FSM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	86.7381968506344	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTCTGTGTCCAACA	NA	False	NA	29	True	AAAAAG	-43	NA	74409292	74350634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_74352642_74358435_74358519_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ES_00032259	chr2	-	3195	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	-14	True	ATTAAA	-43	NA	74409292	74350677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ES_00032260	chr2	-	3197	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	-35	-1042	-18	0	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTCTGTGTCCAACA	NA	False	NA	29	True	AAAAAG	-43	NA	74409310	74350634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ES_00032263	chr2	-	582	1	FSM	ENSMUSG00000075279.6	ENSMUST00000173086.2	580	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGACTGGCCGGGCGTG	NA	False	NA	NA	False	NA	NA	NA	74422253	74421671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_74421700_74422300
ES_00032265	chr2	-	750	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	75022166	75021416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_75021400_75022200
ES_00032266	chr2	-	679	2	Intergenic	novelGene_2284	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTGATCTTTATTTTGT	3908	False	NA	NA	False	NA	NA	NA	75463910	75457246	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_75457815_75463799
ES_00032267	chr2	-	2477	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	0	-2	0	2	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGACTTTTTGAATTTATT	NA	False	NA	3	True	AATAAA	-24	NA	75534985	75505854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
ES_00032268	chr2	-	1344	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	0	103	0	-103	multi-exon	FALSE	canonical	3	19	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATATGTTATTCACATT	NA	False	NA	NA	False	NA	NA	NA	75534833	75521498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_75522717_75534707
ES_00032269	chr2	-	2596	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	141	0	141	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCGGTGTTTAGCGCC	NA	False	NA	NA	False	NA	NA	NA	75768788	75766192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_75766200_75768800
ES_00032270	chr2	-	2263	1	FSM	ENSMUSG00000075272.5	ENSMUST00000099995.5	2431	1	42	126	42	-126	mono-exon	FALSE	NA	NA	NA	NA	NA	1353	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTGTGACTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	75808472	75806209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_75806200_75808500
ES_00032271	chr2	-	2858	1	FSM	ENSMUSG00000075271.5	ENSMUST00000099994.5	3721	1	-8	871	-8	-871	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTACTGTTCATAATTG	NA	False	NA	-12	True	AATAAA	-19	NA	75812319	75809461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_75809500_75812300
ES_00032273	chr2	-	636	3	NIC	ENSMUSG00000056436.5	novel	655	4	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	45	junction_2	94.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190804	76184285	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_76184581_76186423_76186617_76190656
ES_00032274	chr2	-	1580	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	34	0	-34	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCTCATTTTATTACA	NA	False	NA	1	True	NA	NA	NA	76478359	76460275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ES_00032277	chr2	-	6277	24	FSM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	41	-96	0	3	multi-exon	TRUE	canonical	3	17	junction_12	5.82219207901242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGACCTCAATCTTTTCA	NA	False	NA	NA	False	ATTAAA	-23	NA	77000920	76840242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_76842102_76844737_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
ES_00032278	chr2	-	8969	23	FSM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_11	5.83396297270922	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGGACCTCAATCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	77000979	76840245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
ES_00032279	chr2	-	632	3	FSM	ENSMUSG00000044033.17	ENSMUST00000111833.3	631	3	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_1	20	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATTTTGATGTTAATC	NA	False	NA	NA	False	AATAAA	-14	NA	77000920	76992323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_76992641_76998854_76998978_77000728
ES_00032280	chr2	-	8985	18	FSM	ENSMUSG00000042272.18	ENSMUST00000102660.8	8990	18	3	2	3	-2	multi-exon	FALSE	canonical	3	17	junction_17	25.3513715905568	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGGGAATTTACTCATTA	NA	False	NA	-12	True	AATAAA	-17	NA	77096109	77010685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77096019
ES_00032281	chr2	-	2720	18	FSM	ENSMUSG00000042272.18	ENSMUST00000102659.2	2720	18	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_17	13.2907335619941	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTATTTAATTTGGTAG	NA	False	NA	NA	False	AATAAA	-14	NA	77110936	77016898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77110898
ES_00032282	chr2	-	3090	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111819.8	3090	20	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	57.3448044097962	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776527	77726109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77776493
ES_00032283	chr2	-	3531	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111821.9	3388	20	0	-143	0	143	multi-exon	TRUE	canonical	3	143	junction_19	43.213763581536	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCAAGACTGTTGGAGAA	NA	False	NA	NA	False	NA	NA	NA	77776697	77725853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
ES_00032284	chr2	-	3257	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111818.8	3255	20	0	-2	0	0	multi-exon	FALSE	canonical	3	78	junction_1	52.4085273558816	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776697	77726109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
ES_00032285	chr2	-	3345	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	70.3935188778058	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776703	77726109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77770645_77770707_77776493
ES_00032286	chr2	-	3478	21	FSM	ENSMUSG00000027014.15	ENSMUST00000065889.10	3471	21	0	-7	0	7	multi-exon	FALSE	canonical	3	27	junction_20	67.1203955590251	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGTACTCTGACAAGTT	NA	False	NA	NA	False	AATAAA	-23	NA	77776719	77725989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
ES_00032287	chr2	-	766	1	FSM	ENSMUSG00000082701.2	ENSMUST00000121511.2	639	1	219	-346	219	346	mono-exon	FALSE	NA	NA	NA	NA	NA	644	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAATGCCAACTCTAAAAA	NA	False	NA	-3	True	ATTAAA	-28	NA	78343461	78342695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_78342700_78343500
ES_00032288	chr2	-	548	4	FSM	ENSMUSG00000075256.10	ENSMUST00000156731.8	548	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.54896090146283	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAAGTTATGAAGATTC	NA	False	NA	NA	False	NA	NA	NA	79168947	79160886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_79161106_79162913_79163001_79163822_79164002_79168884
ES_00032292	chr2	-	498	4	FSM	ENSMUSG00000027002.14	ENSMUST00000134587.2	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	661	junction_3	42.6327990584193	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCTAGACGGAACCTTT	NA	False	NA	NA	False	NA	NA	NA	80385134	80379276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_80379312_80383480_80383794_80384545_80384603_80385041
ES_00032296	chr2	-	1328	10	NNC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	44374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.3187389270582	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	84307119	84218824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_84218853_84263198_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ES_00032298	chr2	-	1492	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304518	84263203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
ES_00032299	chr2	-	1334	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATCATGTTGACTGTCCC	NA	False	NA	-6	True	AATAAA	-15	NA	84307107	84263202	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ES_00032301	chr2	-	3614	8	FSM	ENSMUSG00000027082.16	ENSMUST00000111714.8	3614	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	78.6801844721492	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTAAATCTATTTTT	NA	False	NA	NA	False	ATTAAA	-36	NA	84307107	84270483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84273270_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ES_00032303	chr2	-	220	2	Intergenic	novelGene_2290	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATATTAATGGTACCAT	9352	False	NA	NA	False	NA	NA	NA	84412043	84369099	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_84369125_84411848
ES_00032304	chr2	-	6131	20	FSM	ENSMUSG00000034101.15	ENSMUST00000067232.10	6119	20	0	-12	0	10	multi-exon	FALSE	canonical	3	20	junction_18	71.3035336138201	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCCAGTGATAGCCCAG	NA	False	NA	NA	False	TATAAA	-11	NA	84481020	84430404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
ES_00032305	chr2	-	5294	18	FSM	ENSMUSG00000034101.15	ENSMUST00000111697.9	5294	18	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	44.1949127323348	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAGGTCTGTGTCATT	NA	False	NA	-36	True	AATAAA	-18	NA	84481084	84431124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ES_00032308	chr2	-	4940	17	NIC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_16	70.6044217807922	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84480976	84431126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84480749
ES_00032309	chr2	-	5249	18	NIC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_9	52.9317638691323	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84480996	84431126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ES_00032310	chr2	-	5380	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_18	37.1560356827033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84481109	84431126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ES_00032311	chr2	-	664	5	NNC	ENSMUSG00000076437.12	novel	747	4	NA	NA	0	57477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	958.585513921424	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAGAAAAGAAAAGAG	412	False	NA	NA	False	NA	NA	NA	84500998	84442081	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_84442121_84499564_84499742_84500330_84500461_84500588_84500735_84500826
ES_00032312	chr2	-	747	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	296	False	NA	-8	True	AATAAA	-25	NA	84501114	84499558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
ES_00032313	chr2	-	660	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	-6	0	0	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	358	False	NA	-8	True	AATAAA	-25	NA	84501052	84499558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
ES_00032314	chr2	-	783	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	111	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	369	False	NA	NA	False	AATAAA	-15	NA	84501041	84500038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84500461_84500588_84500735_84500826
ES_00032316	chr2	-	2471	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	-545	0	545	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGATAGCGTAGTTGGGC	5229	False	NA	NA	False	NA	NA	NA	84508462	84501114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
ES_00032317	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5291	False	NA	-8	True	AATAAA	-16	NA	84508400	84501660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ES_00032318	chr2	-	4706	12	FSM	ENSMUSG00000034075.11	ENSMUST00000035840.6	4706	12	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	28.4648543626047	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGCTATTCCTTTGTT	NA	False	NA	NA	False	AATACA	-15	NA	84545524	84518313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84519789_84520193_84521054_84521469_84521583_84522229_84522354_84522676_84522810_84523692_84523785_84524658_84524762_84524913_84525087_84526586_84526745_84532676_84532799_84540661_84541817_84545326
ES_00032322	chr2	-	1804	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	-9	-27	-9	27	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGTGTACTAGTTCCC	NA	False	NA	1	True	AATAAA	-28	NA	84605757	84595703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
ES_00032323	chr2	-	1022	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6378	0	6378	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4147	False	NA	-19	True	AATAAA	-19	NA	84646618	84641519	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
ES_00032325	chr2	-	2097	12	FSM	ENSMUSG00000027071.15	ENSMUST00000028465.14	1812	12	-14	-271	-14	271	multi-exon	FALSE	canonical	2	7	junction_11	6.62452243717697	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCACACATCCACACATC	NA	False	NA	NA	False	AATAGA	-20	NA	84865845	84828655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84865524
ES_00032326	chr2	-	2230	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-99	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTATT	NA	False	NA	-10	True	AATAAA	-13	NA	87327536	87319433	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
ES_00032327	chr2	-	709	1	NIC	ENSMUSG00000075065.6	novel	4982	5	NA	NA	1058	749	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAATATTCAAGCCAAGTA	NA	False	NA	NA	False	NA	NA	NA	89979322	89978613	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_89978600_89979300
ES_00032331	chr2	-	628	1	FSM	ENSMUSG00000080977.2	ENSMUST00000118431.2	317	1	-96	-215	-96	215	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAGATTGGACTTAAT	1853	False	NA	NA	False	NA	NA	NA	90635016	90634388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90634400_90635000
ES_00032333	chr2	-	1316	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGACTCCCCTCACA	NA	False	NA	-1	True	AATAAA	-26	NA	90748389	90741056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
ES_00032335	chr2	-	2318	10	FSM	ENSMUSG00000002105.16	ENSMUST00000111436.3	1291	10	54	-1081	0	-2	multi-exon	FALSE	canonical	3	19	junction_7	11.8831761976001	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCTCTTCCACATACTA	4355	False	NA	-2	True	AATAAA	-13	NA	90900574	90892137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896085_90896357_90896472_90898775_90899085_90900499
ES_00032337	chr2	-	2470	10	FSM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	0	-1	0	1	multi-exon	FALSE	canonical	3	29	junction_7	9.55684745788763	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTCCACATACTAGGG	4167	False	NA	1	True	AATAAA	-16	NA	90900762	90892134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357_90896472_90898775_90899085_90900499
ES_00032339	chr2	-	811	3	FSM	ENSMUSG00000002105.16	ENSMUST00000150348.2	861	3	50	0	50	0	multi-exon	FALSE	canonical	3	34	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTACTTCTTGCTTTTA	8458	False	NA	NA	False	NA	NA	NA	90896471	90894985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90895150_90895250_90895353_90895926
ES_00032342	chr2	-	6021	34	NNC	ENSMUSG00000040687.17	novel	5905	35	NA	NA	0	48388	intron_retention	TRUE	non_canonical	0	0	junction_1	5.24443821885671	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	91013371	90919316	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_90919340_90967704_90968747_90969053_90969101_90970901_90970972_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988761_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ES_00032343	chr2	-	440	2	FSM	ENSMUSG00000040687.17	ENSMUST00000156368.2	600	2	160	0	160	0	multi-exon	FALSE	canonical	3	19	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCGTAGCAGTGAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	90969441	90968694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90968747_90969053
ES_00032344	chr2	-	758	6	FSM	ENSMUSG00000040687.17	ENSMUST00000130591.8	843	6	85	0	-71	0	multi-exon	FALSE	canonical	3	13	junction_5	3.77359245282264	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCCGACAGCAAAGCATC	NA	False	NA	NA	False	NA	NA	NA	90985211	90973386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989
ES_00032346	chr2	-	1917	7	FSM	ENSMUSG00000002109.15	ENSMUST00000152277.8	2297	7	380	0	380	0	multi-exon	FALSE	canonical	3	12	junction_6	33.2214789957742	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAACAGGGTTTCTGAGT	5028	False	NA	-26	True	AATAAA	-35	NA	91065296	91041916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91064452
ES_00032347	chr2	-	2228	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCTTTGTATCTAACTA	3094	False	NA	-57	True	AATAAA	-4	NA	91067230	91041947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
ES_00032348	chr2	-	1557	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAGGGTTGGAGCAGGG	2997	False	NA	NA	False	NA	NA	NA	91067327	91042200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
ES_00032350	chr2	-	317	3	FSM	ENSMUSG00000040591.19	ENSMUST00000139490.8	307	3	-9	-1	-3	1	multi-exon	FALSE	canonical	3	7	junction_1	64	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTCTTTTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	91274991	91249127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91249264_91252210_91252314_91274913
ES_00032355	chr2	-	3909	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	0	-358	0	358	multi-exon	FALSE	canonical	3	217	junction_4	20.2170445141937	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGGCTGAGCAAATGAG	NA	False	NA	NA	False	NA	NA	NA	91540921	91504604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ES_00032358	chr2	-	777	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	-6	0	6	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTCCCAGTTTGCCAT	NA	False	NA	NA	False	AATAAA	-43	NA	91762033	91760143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
ES_00032359	chr2	-	773	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
ES_00032360	chr2	-	1054	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762642	91760172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
ES_00032361	chr2	-	714	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTCACGCCCACACCAAG	NA	False	NA	NA	False	NA	NA	NA	91762044	91760310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
ES_00032363	chr2	-	3914	31	NNC	ENSMUSG00000040479.13	novel	3584	31	NA	NA	-70	255	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_9	44.504232008503	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTGTGCCCTGGAGCA	NA	False	NA	NA	False	AGTAAA	-41	NA	91794072	91762913	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767120_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
ES_00032364	chr2	-	3395	31	FSM	ENSMUSG00000040479.13	ENSMUST00000239257.2	3393	31	0	-2	0	0	multi-exon	FALSE	canonical	2	7	junction_30	54.3341104238908	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTTCTTTTTTTCTT	NA	False	NA	-3	True	AGTAAA	-18	NA	91795945	91763168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91795764
ES_00032365	chr2	-	3512	31	FSM	ENSMUSG00000040479.13	ENSMUST00000099709.10	3512	31	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_30	51.2884652399218	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTTCTTTTTTTCTT	NA	False	NA	-3	True	AGTAAA	-18	NA	91806209	91763168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91805911
ES_00032367	chr2	-	2604	12	FSM	ENSMUSG00000027230.10	ENSMUST00000028663.5	2603	12	0	-1	0	1	multi-exon	FALSE	canonical	2	4	junction_10	5.08603662934522	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCTGTGTGTCCTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	91854847	91812671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91813353_91813509_91813778_91816505_91816633_91817380_91817481_91821051_91821121_91821253_91821313_91821470_91821621_91822231_91822390_91823615_91823695_91825601_91825787_91832189_91832419_91854348
ES_00032368	chr2	-	2450	14	FSM	ENSMUSG00000040434.17	ENSMUST00000090582.11	2291	14	-23	-136	1	111	multi-exon	FALSE	canonical	0	0	junction_9	42.5506311706155	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTCTCCCGCGACATT	NA	False	NA	NA	False	NA	NA	NA	92201401	92195279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
ES_00032370	chr2	-	2651	14	ISM	ENSMUSG00000040434.17	ENSMUST00000148352.8	2621	15	58	-1	26	1	3prime_fragment	FALSE	canonical	0	0	junction_10	45.3373939473899	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTGAGTGTTTTGT	NA	False	NA	-4	True	GGGGCT	-44	NA	92201305	92195394	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200690_92201009_92201083
ES_00032374	chr2	-	2991	12	FSM	ENSMUSG00000027223.16	ENSMUST00000050312.3	2930	12	-61	0	-61	0	multi-exon	FALSE	canonical	3	50	junction_10	15.2158030073021	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATCAGAGTGGGTGTA	NA	False	NA	-10	True	ATTAAA	-14	NA	92231669	92214024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92214767_92215068_92215168_92215268_92215340_92215491_92215609_92215757_92215868_92216139_92216313_92216707_92216784_92216915_92217729_92217898_92217981_92219319_92219626_92221380_92221487_92231373
ES_00032375	chr2	-	3979	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	0	-3	0	3	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTAATCTATCTTGT	NA	False	NA	NA	False	AGTAAA	-5	NA	92264388	92233987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
ES_00032377	chr2	-	3128	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	17	-6	17	6	multi-exon	FALSE	canonical	3	54	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCATGTTTTATGGACTG	NA	False	NA	NA	False	AATAAA	-30	NA	92290122	92283102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92285120_92289011
ES_00032378	chr2	-	2689	3	FSM	ENSMUSG00000049922.9	ENSMUST00000125276.2	2668	3	-12	-9	-12	6	multi-exon	FALSE	canonical	3	3	junction_2	25.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCATGTTTTATGGACTG	NA	False	NA	NA	False	AATAAA	-30	NA	92290895	92283102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92285120_92289011_92289536_92290747
ES_00032380	chr2	-	698	3	FSM	ENSMUSG00000027217.14	ENSMUST00000152141.2	674	3	-49	25	-49	-25	multi-exon	FALSE	canonical	3	11	junction_1	26	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGATTAAATGAAACCTA	NA	False	NA	NA	False	NA	NA	NA	93164899	93141632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93141967_93142291_93142373_93164616
ES_00032382	chr2	-	1816	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	19	-11	19	11	multi-exon	TRUE	canonical	2	9	junction_8	1.4229164972073	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCGGTATCCTGAACTAT	NA	False	NA	NA	False	ATTAAA	-28	NA	93292828	93249444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
ES_00032383	chr2	-	3010	16	NNC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_13	163.970647779819	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652865	93525975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93650379_93650495_93651954_93652027_93652731
ES_00032384	chr2	-	2944	15	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	84	junction_13	124.260444885995	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGAATGCTGGTTCTT	NA	False	NA	-7	True	ATTAAA	-23	NA	93652910	93525971	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93651954_93652027_93652731
ES_00032385	chr2	-	2879	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	0	-8	0	8	multi-exon	TRUE	canonical	3	390	junction_9	31.3157237855525	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAATGCTGGTTCTTGGTT	NA	False	NA	-3	True	ATTAAA	-27	NA	93652913	93525967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
ES_00032386	chr2	-	4188	15	FSM	ENSMUSG00000040272.15	ENSMUST00000111246.8	3950	15	-31	-207	-29	207	multi-exon	FALSE	canonical	3	8	junction_14	5.46230122694433	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGAGTGTTTGATTGGC	NA	False	NA	NA	False	NA	NA	NA	93680317	93663604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678553_93680109
ES_00032387	chr2	-	1963	15	FSM	ENSMUSG00000040272.15	ENSMUST00000041593.15	2036	15	73	0	-47	0	multi-exon	FALSE	canonical	1	1	junction_14	6.99599010512597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTCTTCATTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	93680071	93665782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678532_93679889
ES_00032388	chr2	-	769	10	FSM	ENSMUSG00000040272.15	ENSMUST00000150666.8	769	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	7.81735959970572	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTTCTGGGTCTAGGG	NA	False	NA	NA	False	NA	NA	NA	93678274	93668355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93673263_93673334_93674547_93674619_93676091_93676152_93678261
ES_00032391	chr2	-	616	3	FSM	ENSMUSG00000075023.12	ENSMUST00000132722.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	38	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93687365	93685706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93686126_93687041_93687163_93687289
ES_00032392	chr2	-	2228	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	0	-4	0	4	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCTGCTTTATTTCTGGT	NA	False	NA	4	True	AATAAA	-27	NA	93699502	93685701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
ES_00032393	chr2	-	2351	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61371	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	1301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGGCCTGCTTTATTTC	NA	False	NA	0	True	AATAAA	-23	NA	93760873	93685705	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
ES_00032394	chr2	-	3013	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-207	0	intron_retention	FALSE	canonical	1	2	junction_14	23.4539279161056	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93699709	93685706	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
ES_00032395	chr2	-	1534	1	FSM	ENSMUSG00000087006.4	ENSMUST00000099689.5	1386	1	-144	-4	-144	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTCCGGGCTTTGGAC	NA	False	NA	-5	True	AATAAA	-21	NA	93787690	93786156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93786200_93787700
ES_00032397	chr2	-	1819	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-15	-8	intron_retention	FALSE	canonical	3	58	junction_9	37.2253730009751	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAAGATCTGAACATG	8783	False	NA	72	True	AATACA	-16	NA	93841167	93810902	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607
ES_00032398	chr2	-	1236	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	-8	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATCCAAAAGCTTTTTG	8875	False	NA	1	True	ATTAAA	-28	NA	93841075	93810973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ES_00032399	chr2	-	1380	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATCCAAAAGCTTTT	8875	False	NA	-1	True	ATTAAA	-26	NA	93841075	93810975	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
ES_00032401	chr2	-	1874	12	NNC	ENSMUSG00000027195.11	novel	1902	11	NA	NA	-6	32021	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	213.059297996614	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCGTGTAGACAAAGATATT	NA	False	NA	NA	False	NA	NA	NA	93988260	93831012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_93831039_93863038_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ES_00032402	chr2	-	1873	12	NNC	ENSMUSG00000027195.11	novel	1902	11	NA	NA	-6	32021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.059297996614	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCGTGTAGACAAAGATATT	NA	False	NA	NA	False	NA	NA	NA	93988260	93831012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_93831038_93863038_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ES_00032403	chr2	-	1904	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	-2	0	2	multi-exon	FALSE	canonical	3	670	junction_5	45.0653969249135	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTTTTGATAGTGGAAAA	NA	False	NA	NA	False	AATAAA	-33	NA	93988309	93863031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ES_00032405	chr2	-	4410	24	FSM	ENSMUSG00000027194.17	ENSMUST00000111237.9	4409	24	0	-1	0	1	multi-exon	TRUE	canonical	2	4	junction_8	56.2706462844556	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTGGTGTAGTTTTTCT	NA	False	NA	-1	True	AATAAA	-22	NA	94237024	94131110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
ES_00032406	chr2	-	4588	25	FSM	ENSMUSG00000027194.17	ENSMUST00000111238.8	4590	25	3	-1	2	1	multi-exon	FALSE	canonical	3	116	junction_1	40.2833497103814	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTGGTGTAGTTTTTCT	NA	False	NA	-1	True	AATAAA	-22	NA	94237031	94131110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
ES_00032407	chr2	-	3404	20	FSM	ENSMUSG00000027194.17	ENSMUST00000094801.5	3408	20	4	0	4	0	multi-exon	FALSE	canonical	3	95	junction_1	34.6292592408193	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTTTAAATATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	94237029	94158281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
ES_00032408	chr2	-	597	1	FSM	ENSMUSG00000081476.2	ENSMUST00000117207.2	597	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGGTAGGGGCTAGT	NA	False	NA	NA	False	GGGGCT	-13	NA	94215443	94214846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_94214800_94215400
ES_00032410	chr2	-	3718	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	3	-71	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	347.427111252326	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATAAATTTCCTTTTGTA	NA	False	NA	-27	True	AATAAA	-24	NA	94268478	94242097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_94244132_94248549_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ES_00032411	chr2	-	3693	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	2	-46	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTCTTAATGTGTT	NA	False	NA	-2	True	AATAAA	-18	NA	94268479	94242072	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ES_00032412	chr2	-	489	1	FSM	ENSMUSG00000082820.4	ENSMUST00000117547.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGCACCCCTCGGAGCT	NA	False	NA	NA	False	NA	NA	NA	97780024	97779535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_97779500_97780000
ES_00032415	chr2	-	3833	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	102016730	101780547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
ES_00032417	chr2	-	5612	5	FSM	ENSMUSG00000027189.17	ENSMUST00000102573.8	5612	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.0156097709407	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTCTCAGAGTTGTTC	NA	False	NA	0	True	AATAAA	-19	NA	102231245	102130463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_102134850_102177308_102177329_102187761_102188002_102211208_102211287_102230357
ES_00032419	chr2	-	2514	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	0	-8	0	8	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACATGCAAAATAGAAGAG	NA	False	NA	NA	False	AATAAA	-23	NA	102903858	102851411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
ES_00032421	chr2	-	2707	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	0	-94	0	94	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTACCTGTGCTGTTCT	NA	False	NA	NA	False	ATTAAA	-33	NA	103315505	103284099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
ES_00032422	chr2	-	4557	27	FSM	ENSMUSG00000027185.16	ENSMUST00000133016.8	4543	27	0	-14	0	10	multi-exon	FALSE	canonical	3	271	junction_23	29.6333611774729	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCTATAAAATCGGTTAT	NA	False	NA	1	True	AATAAA	-30	NA	103591586	103551590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
ES_00032423	chr2	-	3880	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	9	-10	0	10	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCTATAAAATCGGTTAT	NA	False	NA	1	True	AATAAA	-30	NA	103591606	103551590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
ES_00032429	chr2	-	6183	19	FSM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	0	-14	0	14	multi-exon	FALSE	canonical	3	761	junction_18	276.654863648277	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAGTTTATGGGCAAAT	NA	False	NA	NA	False	AATAAA	-37	NA	103627994	103593271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
ES_00032430	chr2	-	4069	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTCATGTGTGGTTAT	NA	False	NA	-11	True	AATAAA	-17	NA	103627449	103595362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ES_00032431	chr2	-	3487	18	ISM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	58	4166	8	0	5prime_fragment	FALSE	canonical	3	761	junction_17	279.160307903274	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	-9	True	NA	NA	NA	103627936	103597451	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
ES_00032434	chr2	-	249	2	Intergenic	novelGene_2320	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1423	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGGCACTGAAACATC	NA	False	NA	NA	False	NA	NA	NA	103718434	103696347	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_103696542_103718379
ES_00032435	chr2	-	511	3	FSM	ENSMUSG00000068373.16	ENSMUST00000155458.2	2690	3	1539	640	1539	-640	multi-exon	FALSE	canonical	2	3	junction_1	1	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGTGGATGAAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	103987225	103983164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103983429_103985254_103985404_103987127
ES_00032437	chr2	-	7622	16	NNC	ENSMUSG00000027177.15	novel	7454	16	NA	NA	-171	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_7	9.18114008897225	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGCTGGCTTTTTTTC	NA	False	NA	-1	True	ATTAAA	-20	NA	104324962	104256825	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265060_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104324292
ES_00032438	chr2	-	4040	16	FSM	ENSMUSG00000027177.15	ENSMUST00000111124.8	4125	16	85	0	85	0	multi-exon	FALSE	canonical	2	5	junction_15	13.0833227176178	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTAGCCATGGCACAA	NA	False	NA	NA	False	AATAAA	-16	NA	104323950	104260125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265063_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104323565
ES_00032439	chr2	-	785	3	FSM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	0	-155	0	155	multi-exon	FALSE	canonical	3	159	junction_2	0.5	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCCTGTAAGCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	104542511	104535139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_104535547_104536700_104536888_104542320
ES_00032440	chr2	-	1776	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	28	-3	28	3	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCAGAATGGTGTGTTG	NA	False	NA	-6	True	AATAAA	-27	NA	104573195	104552125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
ES_00032441	chr2	-	10020	12	FSM	ENSMUSG00000074994.7	ENSMUST00000231375.2	9037	12	-984	1	-984	-1	multi-exon	FALSE	canonical	3	14	junction_3	32.5683007674032	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAATGTGTTTGGATTT	NA	False	NA	NA	False	ATTAAA	-24	NA	104648089	104585140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_104588951_104590838_104590935_104593155_104593309_104596303_104596402_104600387_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864_104620543_104625532_104625640_104646944
ES_00032442	chr2	-	6093	8	ISM	ENSMUSG00000074994.7	ENSMUST00000231375.2	9037	12	-243	14277	-243	-14277	5prime_fragment	FALSE	canonical	3	39	junction_1	21.0877660635502	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCTTCTAGTGGTCATT	NA	False	NA	0	True	AATAAA	-20	NA	104647348	104599416	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864_104620543_104625532_104625640_104646944
ES_00032443	chr2	-	6567	8	NNC	ENSMUSG00000074994.7	novel	9037	12	NA	NA	-222	-14277	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	22.6337295708355	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCTTCTAGTGGTCATT	NA	False	NA	0	True	AATAAA	-20	NA	104647327	104599416	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_104601021_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864_104620543_104625532_104625640_104646944
ES_00032448	chr2	-	2720	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	0	0	0	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACAAGCTGGAGTTATCA	NA	False	NA	NA	False	NA	NA	NA	105229664	105216635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ES_00032449	chr2	-	645	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	105385190	105384545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_105384500_105385200
ES_00032450	chr2	-	3065	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	42	-59	-39	59	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCAGTTAGCTCTGAAA	NA	False	NA	55	True	NA	NA	NA	105734867	105531312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
ES_00032451	chr2	-	2937	9	NIC	ENSMUSG00000027167.12	novel	3048	10	NA	NA	-7	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_8	69.1718873531726	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACCTTTCTCTTACCCT	NA	False	NA	-5	True	AATAAA	-29	NA	105734835	105531372	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105734613
ES_00032452	chr2	-	929	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	268	0	-18	0	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833626	105797053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ES_00032453	chr2	-	3342	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	0	-5	0	5	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACTGTTTATTATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	106804769	106792866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
ES_00032454	chr2	-	3271	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	14	5	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACTGTTTATTATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	106804728	106792866	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
ES_00032455	chr2	-	3793	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	43	5	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACTGTTTATTATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	106804699	106792866	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
ES_00032456	chr2	-	3831	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	35	5	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACTGTTTATTATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	106804707	106792866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
ES_00032457	chr2	-	333	1	FSM	ENSMUSG00000083424.4	ENSMUST00000121779.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	108705603	108705270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_108705300_108705600
ES_00032458	chr2	-	1904	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	0	-10	0	10	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATTATTGGGTAT	NA	False	NA	NA	False	AATAAA	-30	NA	109108635	108922631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
ES_00032461	chr2	-	4958	12	FSM	ENSMUSG00000041219.15	ENSMUST00000102545.8	4958	12	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_2	47.4803134497789	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAATGTTATTTA	6017	False	NA	-58	True	GATAAA	-18	NA	113679001	113661890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
ES_00032462	chr2	-	4536	13	NNC	ENSMUSG00000041219.15	novel	4958	12	NA	NA	-83	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.963219861107	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAATGTTATTTA	5929	False	NA	-58	True	GATAAA	-18	NA	113679089	113661890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_113662633_113663142_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
ES_00032463	chr2	-	1337	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	0	-21	0	21	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAAATGGGTTCTT	7160	False	NA	NA	False	AGTAAA	-40	NA	113751486	113750149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_113750100_113751500
ES_00032464	chr2	-	4888	35	FSM	ENSMUSG00000040383.17	ENSMUST00000043160.13	4888	35	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_21	28.9958832539162	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGGCATACTTGCCCTT	7809	False	NA	-3	True	ATTAAA	-19	NA	114005820	113931650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_113932211_113934484_113934599_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
ES_00032465	chr2	-	4427	2	FSM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	49	-176	20	176	multi-exon	FALSE	canonical	3	9	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTGCATTTTTTAAAGG	NA	False	NA	NA	False	AATAAA	-14	NA	114031901	114023765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_114028109_114031817
ES_00032468	chr2	-	3700	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110908.9	3697	13	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTTTTTTAATGGTT	NA	False	NA	7	True	AATAAA	-28	NA	115896320	115693541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
ES_00032469	chr2	-	3229	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110906.9	3229	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.4825309634758	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGTGACGTTATGTTA	NA	False	NA	-77	True	ATTAAA	-12	NA	115895202	115693625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
ES_00032473	chr2	-	5134	16	NNC	ENSMUSG00000027347.19	novel	5104	17	NA	NA	4021	4	at_least_one_novel_splicesite	FALSE	non_canonical	2	19	junction_14	9.32714080281603	309	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTCGTGTGCTTCTT	NA	False	NA	-3	True	CATAAA	-20	NA	117169169	117110469	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234_117124352_117125189_117125364_117128942_117129097_117130923_117131056_117132441_117132501_117136254_117136365_117168756
ES_00032476	chr2	-	798	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	118310192	118306330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
ES_00032477	chr2	-	4640	5	FSM	ENSMUSG00000040093.17	ENSMUST00000090219.13	4642	5	2	0	2	0	multi-exon	FALSE	canonical	2	4	junction_1	1.11803398874989	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTATTTTTTCTA	NA	False	NA	1	True	AATAAA	-16	NA	118380166	118359237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_118363141_118375562_118375727_118377196_118377494_118379521_118379652_118380020
ES_00032478	chr2	-	1873	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	9	-12	-7	12	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCTGATTTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	118859865	118848247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
ES_00032479	chr2	-	1879	4	NIC	ENSMUSG00000039983.14	novel	1870	4	NA	NA	-4	12	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	18.6726180988812	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCTGATTTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	118859862	118848247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_118849646_118852549_118852707_118857618_118857869_118859788
ES_00032480	chr2	-	2249	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	0	0	0	0	multi-exon	TRUE	canonical	3	215	junction_12	29.1989107483291	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987515	118967481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
ES_00032483	chr2	-	952	5	FSM	ENSMUSG00000027317.9	ENSMUST00000110820.3	790	5	-141	-21	-100	0	multi-exon	FALSE	canonical	2	2	junction_4	21.0297408448131	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060487	119048599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119058237_119058303_119060022
ES_00032484	chr2	-	791	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	0	-4	0	4	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGTGGTGTGTATCTAT	NA	False	NA	NA	False	GATAAA	-22	NA	119060387	119048595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
ES_00032485	chr2	-	1671	3	FSM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	32	0	32	0	multi-exon	FALSE	canonical	3	45	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	NA	False	NA	-5	True	AATAAA	-17	NA	119101721	119099681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119100969_119101162_119101222_119101396
ES_00032487	chr2	-	6354	36	FSM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_35	12.9307732931632	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAAGTGTCTGTGGTCTTT	NA	False	NA	0	True	AATAAA	-26	NA	119308168	119203522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941_119276138_119277336_119277541_119278685_119278740_119280483_119280699_119281810_119281932_119284536_119284699_119286865_119286934_119287052_119287223_119288561_119288748_119307859
ES_00032490	chr2	-	1480	5	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	131.115407180087	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493287	119485926	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493073
ES_00032492	chr2	-	1308	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
ES_00032493	chr2	-	1284	4	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	127.452823516085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493293	119485926	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493089
ES_00032496	chr2	-	2243	14	FSM	ENSMUSG00000027297.16	ENSMUST00000140224.8	2240	14	0	-3	0	3	multi-exon	FALSE	canonical	3	10	junction_7	7.17243243134772	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGAGTGAATGTGGAAG	NA	False	NA	-1	True	NA	NA	NA	119589006	119581797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119582416_119582546_119582638_119582711_119582847_119582977_119583080_119583175_119583269_119583406_119583505_119583594_119583725_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588727
ES_00032498	chr2	-	5457	25	NIC	ENSMUSG00000034032.16	novel	5458	26	NA	NA	0	100	combination_of_known_junctions	FALSE	canonical	3	58	junction_24	80.8678191041818	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATACATAAAATTTAAATAA	487	False	NA	NA	False	NA	NA	NA	119617995	119593684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617915
ES_00032499	chr2	-	4773	26	NIC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	84	junction_25	88.1886704741601	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACTGTTTTGTCACAT	493	False	NA	-1	True	AATAAA	-21	NA	119617989	119594439	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617915
ES_00032500	chr2	-	4745	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	0	-1	0	0	multi-exon	FALSE	canonical	3	120	junction_24	70.0848691865005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACTGTTTTGTCACAT	464	False	NA	-1	True	AATAAA	-21	NA	119618018	119594439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
ES_00032501	chr2	-	4814	26	FSM	ENSMUSG00000034032.16	ENSMUST00000099529.9	4813	26	0	-1	0	1	multi-exon	FALSE	canonical	3	111	junction_25	84.4691091464803	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGTTTTGTCACATT	473	False	NA	0	True	AATAAA	-22	NA	119618009	119594438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
ES_00032502	chr2	-	593	1	Genic_Genomic	ENSMUSG00000034032.16	novel	NA	NA	NA	NA	12765	14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGTGGACTTTACCTTA	NA	False	NA	NA	False	NA	NA	NA	119597918	119597325	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_119597300_119597900
ES_00032504	chr2	-	202	1	Intergenic	novelGene_2340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTTTTTTTTTTTTTTT	8696	False	NA	NA	False	NA	NA	NA	119609786	119609584	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_119609600_119609800
ES_00032505	chr2	-	3730	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCACAGTTCCTAGAC	NA	False	NA	NA	False	AATAAA	-20	NA	119985087	119919655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
ES_00032506	chr2	-	4271	20	FSM	ENSMUSG00000050211.15	ENSMUST00000090071.5	4477	20	206	0	-21	0	multi-exon	FALSE	canonical	0	0	junction_19	6.9306017774238	685	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTCATCTGTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	120075610	119996892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120075166
ES_00032507	chr2	-	4423	25	FSM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	0	-84	0	84	multi-exon	FALSE	canonical	3	237	junction_15	25.6031410833385	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGACAGCTAGTAACTATG	NA	False	NA	NA	False	NA	NA	NA	120183606	120146857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
ES_00032509	chr2	-	2867	20	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	102.185508348021	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234543	120185792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00032510	chr2	-	2877	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_8	102.185508348021	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTCATTTATTTC	NA	False	NA	NA	False	TATAAA	-17	NA	120234550	120185789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00032512	chr2	-	2845	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	132.468147114693	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTAGTGTCTCTCTCAT	NA	False	NA	NA	False	TATAAA	-10	NA	120234550	120185796	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120185973_120185997_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00032513	chr2	-	2867	21	NNC	ENSMUSG00000033808.17	novel	2897	20	NA	NA	0	3	intron_retention	TRUE	non_canonical	0	0	junction_1	140.435251984678	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTCATTTATTTC	NA	False	NA	NA	False	TATAAA	-17	NA	120234558	120185789	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120185973_120185993_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204964_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00032514	chr2	-	2900	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_8	114.209531889923	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTCATTTATTTC	NA	False	NA	NA	False	TATAAA	-17	NA	120234570	120185789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00032516	chr2	-	1940	20	NIC	ENSMUSG00000033808.17	novel	2897	20	NA	NA	6	-267	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	139.89200425037	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTTGTCCCTGAACTT	NA	False	NA	NA	False	NA	NA	NA	120234544	120186720	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120187020_120190014_120190046_120190519_120190573_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00032525	chr2	-	1803	6	NIC	ENSMUSG00000027286.17	novel	1962	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	69.0582362937253	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439836	120434718	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439754
ES_00032527	chr2	-	1961	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120440001	120434718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
ES_00032528	chr2	-	4419	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	11	129	combination_of_known_junctions	TRUE	canonical	3	17	junction_26	17.8771144441848	233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCTATGAACTAGCATCA	6153	False	NA	NA	False	NA	NA	NA	120561960	120548537	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182_120561674_120561892
ES_00032529	chr2	-	4337	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	-4	1	combination_of_known_junctions	FALSE	canonical	3	36	junction_26	16.0161955070022	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGGCTGTTCTCCCTGC	6110	False	NA	NA	False	AATAAA	-16	NA	120562003	120548665	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560987_120561182_120561674_120561892
ES_00032531	chr2	-	11071	15	FSM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	0	-5	0	5	multi-exon	FALSE	canonical	3	11	junction_14	10.4060422008425	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTATTTGTGTGATGGTT	NA	False	NA	8	True	AATAAA	-26	NA	120680887	120563291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120680536
ES_00032532	chr2	-	11178	16	FSM	ENSMUSG00000090100.8	ENSMUST00000085840.11	11152	16	-21	-5	-4	5	multi-exon	FALSE	canonical	3	12	junction_14	10.6048207067457	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTATTTGTGTGATGGTT	NA	False	NA	8	True	AATAAA	-26	NA	120680920	120563291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
ES_00032533	chr2	-	7762	47	FSM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	3	3	3	-3	multi-exon	FALSE	canonical	3	63	junction_19	10.4276243563166	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTTCTCATGTTTGGGC	NA	False	NA	NA	False	AATAAA	-34	NA	120801193	120690752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120693273_120694798_120694901_120696870_120697042_120698706_120698785_120701469_120701527_120703604_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256_120720354_120722552_120722609_120723548_120723698_120725552_120725647_120726976_120727075_120730981_120731132_120732082_120732177_120734474_120734681_120737324_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
ES_00032534	chr2	-	3408	1	FSM	ENSMUSG00000074890.5	ENSMUST00000110674.4	3056	1	-30	-322	-30	322	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATTTAAAAAAGAAACAGCA	NA	False	NA	NA	False	NA	NA	NA	120971164	120967756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120967800_120971200
ES_00032535	chr2	-	5072	5	FSM	ENSMUSG00000050619.15	ENSMUST00000110661.9	5072	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	14.6372811683044	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTCAGTACAAATTTT	NA	False	NA	NA	False	AATAAA	-34	NA	121000749	120988753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120992031_120994227_120994684_120996524_120997200_120999679_120999885_121000290
ES_00032536	chr2	-	2601	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	1	4942	1	-497	5prime_fragment	FALSE	canonical	3	33	junction_1	2	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTCATTATCTTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	121001605	120996118	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_120997200_120999679_120999885_121000290
ES_00032537	chr2	-	9405	27	FSM	ENSMUSG00000043909.17	ENSMUST00000110647.8	9405	27	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_8	35.6224656526131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTTGTTCTAACGTG	8138	False	NA	NA	False	NA	NA	NA	121101822	121025318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ES_00032538	chr2	-	9621	28	FSM	ENSMUSG00000043909.17	ENSMUST00000110648.8	9621	28	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_12	23.0142199734784	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTTGTTCTAACGTG	8072	False	NA	NA	False	NA	NA	NA	121101888	121025318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ES_00032544	chr2	-	5653	31	NIC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	48	junction_7	18.7846272846235	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGGGGTGTGACTCCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	121181466	121141041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121162722_121162873_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397
ES_00032545	chr2	-	5554	31	NIC	ENSMUSG00000033526.17	novel	5533	30	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_6	18.7459328922303	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGGGGTGTGACTCCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	121185804	121141041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ES_00032546	chr2	-	5172	30	FSM	ENSMUSG00000033526.17	ENSMUST00000110625.8	5226	30	60	-6	-3	0	multi-exon	FALSE	canonical	2	6	junction_3	23.8095894908782	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAGATGCTGTAATAGAG	NA	False	NA	NA	False	GGGGCT	-9	NA	121185817	121141373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121142964_121147135_121147250_121152135_121152274_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ES_00032551	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273082	121269507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
ES_00032552	chr2	-	3431	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	52	-121	52	121	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATAACCACCATCACAGA	9247	False	NA	NA	False	ACTAAA	-29	NA	121304496	121290594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
ES_00032555	chr2	-	5073	14	FSM	ENSMUSG00000027238.18	ENSMUST00000110592.2	2222	14	-65	-2786	0	8	multi-exon	FALSE	canonical	2	7	junction_6	7.44049371651923	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCTTTTTTAAAAAAACAAA	NA	False	NA	NA	False	AATAAA	-25	NA	121637538	121376001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121379714_121383818_121383926_121384745_121384815_121386050_121386126_121387797_121387890_121388304_121388369_121393365_121393455_121399373_121399462_121404025_121404150_121406802_121406901_121416386_121416466_121416909_121416953_121422138_121422244_121637210
ES_00032556	chr2	-	954	8	FSM	ENSMUSG00000027238.18	ENSMUST00000142016.8	2454	8	0	1500	0	-1500	multi-exon	FALSE	canonical	3	9	junction_2	7.61309291112813	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCCTGTCTTCATCT	NA	False	NA	NA	False	ATTAAA	-3	NA	121637538	121393365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121393455_121399373_121399462_121404025_121404150_121406802_121406901_121416386_121416466_121416909_121416953_121422138_121422244_121637210
ES_00032558	chr2	-	2012	6	FSM	ENSMUSG00000033396.14	ENSMUST00000135847.2	1813	6	-17	-182	-6	182	multi-exon	FALSE	canonical	3	87	junction_3	7.08237248385031	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGAGCCGTCTCTCCA	6973	False	NA	NA	False	NA	NA	NA	121948873	121937964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
ES_00032563	chr2	-	1774	6	FSM	ENSMUSG00000033256.15	ENSMUST00000151130.8	1539	6	0	-235	0	0	multi-exon	TRUE	canonical	3	35	junction_2	39.8216021777125	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCCGAGCATCCACTCG	NA	False	NA	-11	True	TATAAA	-38	NA	122199618	122179373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122180021_122184245_122184366_122184511_122184679_122187563_122187771_122189928_122190071_122199127
ES_00032564	chr2	-	1776	6	FSM	ENSMUSG00000033256.15	ENSMUST00000110531.9	1557	6	-219	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	30.854497241083	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCCGAGCATCCACTCG	NA	False	NA	-11	True	TATAAA	-38	NA	122199618	122179373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563_122187771_122189928_122190071_122199127
ES_00032565	chr2	-	592	1	FSM	ENSMUSG00000081219.2	ENSMUST00000121525.2	592	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGTGGCTTTCCTAGATC	8363	False	NA	NA	False	NA	NA	NA	122298007	122297415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122297400_122298000
ES_00032566	chr2	-	5452	7	FSM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	0	6	0	-6	multi-exon	FALSE	canonical	2	11	junction_5	3.62476052848859	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAATTGTTTTCTATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	122544559	122523158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122527254_122527917_122528053_122528870_122528977_122529783_122529989_122531318_122531473_122536314_122536462_122543949
ES_00032567	chr2	-	5486	6	FSM	ENSMUSG00000005802.13	ENSMUST00000099457.4	3170	6	-157	-2159	-157	-6	multi-exon	FALSE	canonical	2	3	junction_5	4.53431361950185	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAATTGTTTTCTATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	122544740	122523158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122527254_122527917_122528053_122528870_122528977_122529783_122529989_122531318_122531473_122543949
ES_00032568	chr2	-	2945	17	NNC	ENSMUSG00000027201.17	novel	2999	16	NA	NA	0	55265	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236.951867475232	299	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAAGATCTTCCATGTG	NA	False	NA	NA	False	NA	NA	NA	124965495	124871282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_124871316_124929663_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
ES_00032569	chr2	-	3424	2	FSM	ENSMUSG00000027201.17	ENSMUST00000129945.2	3424	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTAATAAATTAGAAGCT	NA	False	NA	NA	False	AATAAA	-20	NA	124930931	124926547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_124928637_124929596
ES_00032571	chr2	-	2942	16	FSM	ENSMUSG00000027201.17	ENSMUST00000142718.8	2942	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	238.581306895574	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTTACTTGTTGCTTT	NA	False	NA	-8	True	NA	NA	NA	124965543	124929660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124940716_124940768_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
ES_00032573	chr2	-	1870	15	FSM	ENSMUSG00000027201.17	ENSMUST00000147105.8	2928	15	86	972	0	120	multi-exon	FALSE	canonical	0	0	junction_12	219.217253156846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	124965495	124930633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
ES_00032575	chr2	-	1801	10	FSM	ENSMUSG00000027201.17	ENSMUST00000149911.2	1801	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	239.764236050519	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGAATGAGAAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	124965495	124941554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
ES_00032576	chr2	-	5765	28	NNC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	8.19933417618679	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCATGACTTATTTT	NA	False	NA	0	True	AATAAA	-18	NA	125467033	125405007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456349_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
ES_00032577	chr2	-	6709	18	FSM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	85	3	85	-3	multi-exon	FALSE	canonical	3	54	junction_6	11.6758408483317	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTTCTGTGTTCTTTTTC	389	False	NA	NA	False	AATAAA	-33	NA	125624705	125578908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095_125615421_125617472_125617652_125624518
ES_00032578	chr2	-	2295	9	FSM	ENSMUSG00000035093.17	ENSMUST00000139944.2	2295	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	10.0304224736548	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGGCTAGAGGATTTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	125602234	125586694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191
ES_00032579	chr2	-	3350	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	57	-15	-19	15	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGATAATCAGAACTCAAA	NA	False	NA	11	True	AATAAA	-37	NA	125701002	125672208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ES_00032580	chr2	-	2016	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	57	0	-19	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125701002	125673521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ES_00032581	chr2	-	4256	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110425.9	4153	9	-248	145	-224	-145	multi-exon	FALSE	canonical	3	222	junction_1	62.4468524026632	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATCTAAAGGAGATGAGA	NA	False	NA	NA	False	NA	NA	NA	126517736	126469506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ES_00032582	chr2	-	4253	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	-314	-1326	-224	-145	multi-exon	FALSE	canonical	3	55	junction_3	121.804595048791	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATCTAAAGGAGATGAGA	NA	False	NA	NA	False	NA	NA	NA	126517736	126469506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ES_00032583	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517406	126480940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ES_00032584	chr2	-	204	1	FSM	ENSMUSG00000074846.4	ENSMUST00000188689.2	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGGAGCCTGCCCTCCT	1789	False	NA	NA	False	NA	NA	NA	126551477	126551273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126551300_126551500
ES_00032586	chr2	-	7107	39	FSM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_33	52.8048791605273	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTAATGAGTTTACTC	NA	False	NA	-16	True	ATTAAA	-35	NA	126718150	126633484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ES_00032587	chr2	-	6995	39	FSM	ENSMUSG00000027365.15	ENSMUST00000028843.12	6985	39	0	-10	0	4	multi-exon	FALSE	canonical	3	69	junction_11	63.1605262609672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATGAGTTTACTCATTC	NA	False	NA	-12	True	ATTAAA	-39	NA	126718037	126633480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647005_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ES_00032592	chr2	-	5617	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	0	-1	0	1	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTATTCTTTTGTAT	8279	False	NA	NA	False	AATAAA	-22	NA	126775155	126732309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
ES_00032597	chr2	-	1651	2	FSM	ENSMUSG00000044145.3	ENSMUST00000150956.2	2364	2	0	713	0	-713	multi-exon	FALSE	canonical	3	36	junction_1	0	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGCTTCTGGAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	127050174	127045199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127046771_127050094
ES_00032598	chr2	-	3919	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	0	-844	0	844	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGGCCACAAAGTCTAGC	NA	False	NA	NA	False	NA	NA	NA	127089736	127082013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
ES_00032599	chr2	-	598	1	FSM	ENSMUSG00000103957.2	ENSMUST00000194123.2	606	1	-54	62	-54	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCAACAGTGTGTCTCAA	NA	False	NA	NA	False	NA	NA	NA	127112028	127111430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127111400_127112000
ES_00032600	chr2	-	1218	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	-7	0	7	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTCTTTTAGTCAT	NA	False	NA	3	True	AATAAA	-26	NA	127286470	127278127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ES_00032602	chr2	-	1296	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTCCTCTGGCTTG	9628	False	NA	99	True	NA	NA	NA	127324419	127300049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
ES_00032604	chr2	-	2765	5	FSM	ENSMUSG00000034800.16	ENSMUST00000077422.12	2765	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	7.11951543294907	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127426597	127417459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426549
ES_00032605	chr2	-	2665	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	115	-2	115	2	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTCACTCTTTTGTTG	NA	False	NA	0	True	ATTAAA	-19	NA	127498500	127475143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
ES_00032606	chr2	-	2006	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAGTCTATCGCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	127571852	127546305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
ES_00032607	chr2	-	2218	5	NNC	ENSMUSG00000027377.3	novel	2006	4	NA	NA	-839	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	23.2849200127464	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAGTCTATCGCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	127572691	127546305	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675_127571900_127572526
ES_00032608	chr2	-	593	3	FSM	ENSMUSG00000027378.17	ENSMUST00000144938.2	631	3	38	0	38	0	multi-exon	FALSE	canonical	1	1	junction_2	38.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGTTATATCTAAATTTT	721	False	NA	2	True	AATAAA	-18	NA	127586429	127582653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127583109_127584991_127585037_127586336
ES_00032610	chr2	-	2300	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	6	-10	6	6	multi-exon	TRUE	canonical	3	41	junction_11	13.7437973922422	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTAAATTTTTCTTCAAA	2797	False	NA	10	True	AATAAA	-26	NA	127630811	127582645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ES_00032611	chr2	-	840	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	-34	-6	-34	6	multi-exon	FALSE	canonical	3	537	junction_1	0	623	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGCCTTGGTTATTTAT	NA	False	NA	1	True	GATAAA	-20	NA	127634442	127633301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127633753_127634053
ES_00032612	chr2	-	3421	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_18	145.15221297161	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673785	127643041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ES_00032614	chr2	-	1279	6	FSM	ENSMUSG00000027379.15	ENSMUST00000133943.2	1137	6	-88	-54	-27	54	multi-exon	FALSE	canonical	3	636	junction_1	30.0759039764393	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTTTCATCCCCAT	NA	False	NA	NA	False	NA	NA	NA	127673812	127665313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ES_00032615	chr2	-	336	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239248.2	531	2	0	195	0	-195	multi-exon	FALSE	canonical	1	2	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAATGCGAGGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	128271243	128198449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128198556_128271013
ES_00032616	chr2	-	475	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239374.2	682	3	204	3	6	1	multi-exon	FALSE	canonical	3	6	junction_2	3.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCAATTGTCTGTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	128271305	128214028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128214348_128271013_128271092_128271227
ES_00032617	chr2	-	611	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239199.2	1105	2	486	8	6	1	multi-exon	FALSE	canonical	3	13	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCAATTGTCTGTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	128271305	128214028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128214348_128271013
ES_00032618	chr2	-	1039	3	FSM	ENSMUSG00000109931.2	ENSMUST00000209672.2	693	3	-96	-250	-96	250	multi-exon	FALSE	canonical	2	7	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGGCTTTTGTCCTTT	NA	False	NA	2	True	AATAAA	-16	NA	128451646	128443434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128443815_128446511_128446668_128451143
ES_00032619	chr2	-	8942	48	FSM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_42	39.2671319365267	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGACTTTAGCAATGTCA	NA	False	NA	-22	True	NA	NA	NA	128529311	128452023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
ES_00032620	chr2	-	548	4	FSM	ENSMUSG00000014355.11	ENSMUST00000154995.2	564	4	0	16	0	-16	multi-exon	FALSE	canonical	3	403	junction_1	4.89897948556636	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTATGTTAGAGGTTT	NA	False	NA	NA	False	AAAAAG	-34	NA	128470559	128465675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128465876_128466777_128466896_128469040_128469128_128470416
ES_00032622	chr2	-	1610	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	14	0	14	0	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785983	128768187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
ES_00032623	chr2	-	2351	1	FSM	ENSMUSG00000074807.4	ENSMUST00000238197.2	2540	1	55	134	55	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAACTGGACAGCTCC	9178	False	NA	NA	False	NA	NA	NA	128809909	128807558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128807600_128809900
ES_00032624	chr2	-	1041	1	FSM	ENSMUSG00000103532.2	ENSMUST00000193902.2	1041	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTATTTTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	129039046	129038005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_129038000_129039000
ES_00032625	chr2	-	1957	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	-57	43	-57	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTTGTTAGTGTCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	129041171	129039214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_129039200_129041200
ES_00032626	chr2	-	3137	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139132	129110129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ES_00032627	chr2	-	3131	9	NNC	ENSMUSG00000048327.7	novel	3137	9	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	3	74	junction_2	84.1037305950218	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139129	129110129	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_129111184_129112494_129112679_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ES_00032629	chr2	-	1119	8	NNC	ENSMUSG00000027404.17	novel	1133	8	NA	NA	0	65785	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1294.20029677143	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATCATGAGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	130021254	129947769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_129947804_130013561_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ES_00032631	chr2	-	1122	8	NNC	ENSMUSG00000027404.17	novel	1133	8	NA	NA	0	65785	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1294.20029677143	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATCATGAGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	130021254	129947769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_129947805_130013559_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ES_00032632	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	FALSE	canonical	3	3295	junction_4	264.518850409989	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021323	130013554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ES_00032633	chr2	-	1133	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	1649.031750539	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGCCCTCCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	130021323	130013706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
ES_00032636	chr2	-	1557	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	54	5	-32	-1	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTATCTGGTTTTGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	130126413	130121233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ES_00032637	chr2	-	1236	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	5	-8	5	0	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126376	130121228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ES_00032639	chr2	-	560	2	Genic_Genomic	ENSMUSG00000083483.4	novel	447	1	NA	NA	-28	24464	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	130227277	130202338	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_130202376_130226754
ES_00032640	chr2	-	534	1	FSM	ENSMUSG00000083483.4	ENSMUST00000117531.2	447	1	-28	-59	-28	59	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGAAAAGCAAACAAG	NA	False	NA	NA	False	ATTAAA	-36	NA	130227277	130226743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130226700_130227300
ES_00032641	chr2	-	682	3	FSM	ENSMUSG00000027408.8	ENSMUST00000130533.2	676	3	0	-6	0	5	multi-exon	FALSE	canonical	3	163	junction_2	20	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTCCTATTCTCTGT	NA	False	NA	2	True	ATTAAA	-24	NA	130235196	130232689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130233063_130233157_130233261_130234990
ES_00032642	chr2	-	2371	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	0	-5	0	5	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTCCTATTCTCTGT	NA	False	NA	2	True	ATTAAA	-24	NA	130239494	130232689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
ES_00032645	chr2	-	1689	8	FSM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.0868371321129	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTCGGGGAGCAGG	7648	False	NA	3	True	AATAAA	-23	NA	130266607	130260878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130266412
ES_00032646	chr2	-	3847	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	24	4	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTTATTTCTCATTAGA	NA	False	NA	NA	False	AATAAA	-19	NA	130471923	130431917	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
ES_00032647	chr2	-	3022	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	0	-7	0	7	multi-exon	FALSE	canonical	3	43	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTACTGCATTTTTTTT	NA	False	NA	2	True	AATAAA	-32	NA	130471947	130455752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130458663_130471835
ES_00032648	chr2	-	2983	2	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTTACTGCATTTTTT	NA	False	NA	0	True	AATAAA	-30	NA	130471947	130455754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130458626_130471835
ES_00032649	chr2	-	3130	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	92.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTTACTGCATTTTTT	NA	False	NA	0	True	AATAAA	-30	NA	130471947	130455754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130458626_130470408_130470556_130471835
ES_00032650	chr2	-	3130	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_1	74	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAAAGTCTTACTGCAT	NA	False	NA	-5	True	AATAAA	-25	NA	130471915	130455759	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130458663_130470408_130470556_130471835
ES_00032652	chr2	-	4204	5	FSM	ENSMUSG00000037703.15	ENSMUST00000045761.7	4201	5	0	-3	0	0	multi-exon	FALSE	canonical	2	6	junction_3	1.87082869338697	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGGAAAGAGTTTTCA	4017	False	NA	NA	False	NA	NA	NA	130484723	130474758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130477385_130477692_130478548_130478862_130479340_130479804_130479968_130484640
ES_00032653	chr2	-	1211	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	27	0	27	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506552	130495879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
ES_00032656	chr2	-	3190	21	FSM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	6	0	6	0	multi-exon	FALSE	canonical	3	76	junction_7	21.856063231973	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539433	130526032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
ES_00032657	chr2	-	3031	20	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_19	27.8455375458768	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539382	130526032	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130539278
ES_00032659	chr2	-	2708	8	Fusion	ENSMUSG00000027309.19_ENSMUSG00000089662.2	novel	1984	7	NA	NA	0	1531	multi-exon	TRUE	canonical	3	31	junction_1	16.7063473211928	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAATGAGTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	130682031	130643889	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_130645843_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
ES_00032663	chr2	-	1064	4	ISM	ENSMUSG00000027316.16	ENSMUST00000110239.8	810	6	1225	-575	0	-1	intron_retention	FALSE	canonical	3	10	junction_1	4.18993502999218	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGTTTTCTGTCATTTG	NA	False	NA	1	True	AATAAA	-20	NA	130883377	130881552	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_130882179_130882318_130882396_130882935_130883071_130883151
ES_00032664	chr2	-	1797	2	FSM	ENSMUSG00000027316.16	ENSMUST00000136569.2	1791	2	0	-6	0	-2	multi-exon	FALSE	canonical	3	17	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTTTTCTGTCATTT	NA	False	NA	0	True	AATAAA	-19	NA	130883431	130881553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130883071_130883151
ES_00032665	chr2	-	1242	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	0	-1	0	0	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	False	NA	-14	True	AATAAA	-15	NA	131001940	130988243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ES_00032666	chr2	-	1358	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184535.8	1358	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	320.450724241133	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	False	NA	-14	True	AATAAA	-15	NA	131001954	130988243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993681_130995513_130995631_131001872
ES_00032667	chr2	-	842	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	0	-10	0	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGGTGTGGCTTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	131002001	130988713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
ES_00032669	chr2	-	5487	1	FSM	ENSMUSG00000068267.6	ENSMUST00000089510.5	4886	1	16	-617	16	617	mono-exon	FALSE	NA	NA	NA	NA	NA	916	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCATTGTTGTGTGTTT	3182	False	NA	NA	False	NA	NA	NA	131021971	131016484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_131016500_131022000
ES_00032670	chr2	-	5978	6	FSM	ENSMUSG00000048911.16	ENSMUST00000059372.11	5978	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	4.63033476111609	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAATGACCCGTGCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	131194801	131139983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_131145501_131146171_131146252_131147571_131147614_131150394_131150438_131155082_131155233_131194655
ES_00032671	chr2	-	279	1	FSM	ENSMUSG00000082044.2	ENSMUST00000121967.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGAATGGTGACGCCTGT	NA	False	NA	NA	False	NA	NA	NA	131164286	131164007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_131164000_131164300
ES_00032672	chr2	-	4704	11	FSM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	92	3437	92	0	multi-exon	FALSE	canonical	1	8	junction_10	8.85494212290515	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCCTGTGGATCTGCTT	NA	False	NA	0	True	AATAAA	-15	NA	131871829	131834771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
ES_00032674	chr2	-	6397	16	NNC	ENSMUSG00000027340.16	novel	6364	16	NA	NA	13436	0	intron_retention	FALSE	canonical	3	36	junction_15	35.6274550810966	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTGTCATTTGCCTC	NA	False	NA	-1	True	AATAAA	-17	NA	131973592	131894415	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131920332_131920422_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131973462
ES_00032676	chr2	-	6331	16	NNC	ENSMUSG00000027340.16	novel	6364	16	NA	NA	10	-21	intron_retention	FALSE	canonical	1	4	junction_10	42.8177533273291	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCTCTCCTGGATGT	7609	False	NA	-22	True	TTTAAA	-15	NA	131987018	131894436	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919412_131920332_131920422_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
ES_00032677	chr2	-	1584	7	FSM	ENSMUSG00000027340.16	ENSMUST00000127724.8	1638	7	0	54	0	-54	multi-exon	FALSE	canonical	3	13	junction_2	53.437398472938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGCATCTGAGGATCTG	7599	False	NA	NA	False	NA	NA	NA	131987028	131916807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_131917601_131919348_131919414_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
ES_00032678	chr2	-	2973	3	FSM	ENSMUSG00000027341.11	ENSMUST00000110164.8	2957	3	0	-16	0	16	multi-exon	FALSE	canonical	3	556	junction_2	10	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTTATTTTATGTGTG	5023	False	NA	14	True	TATAAA	-36	NA	132089574	132081395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132082547_132085938_132086062_132087875
ES_00032679	chr2	-	1796	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	-20	-225	-1	225	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGATTTAAAACTATTT	4888	False	NA	NA	False	ATTAAA	-16	NA	132089709	132081186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
ES_00032680	chr2	-	1619	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	9	-16	9	16	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTTATTTTATGTGTG	4879	False	NA	14	True	TATAAA	-36	NA	132089718	132081395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ES_00032681	chr2	-	1533	4	FSM	ENSMUSG00000027341.11	ENSMUST00000180286.2	1531	4	0	-2	0	0	multi-exon	FALSE	canonical	3	7	junction_3	263.641591728029	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4889	False	NA	-2	True	TATAAA	-20	NA	132089708	132081411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089552
ES_00032684	chr2	-	1518	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8225	False	NA	-10	True	AATAAA	-27	NA	132095234	132091081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ES_00032687	chr2	-	3660	20	FSM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	24	2	8	-1	multi-exon	FALSE	canonical	3	65	junction_16	14.3132737727671	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGCTTCCTGATTTG	NA	False	NA	-2	True	NA	NA	NA	132420129	132371003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
ES_00032688	chr2	-	3591	19	FSM	ENSMUSG00000027346.16	ENSMUST00000149854.8	3612	19	28	-7	10	7	multi-exon	TRUE	canonical	3	23	junction_15	20.2402239776804	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGATTTGTTCTTAACA	NA	False	NA	7	True	NA	NA	NA	132420127	132370994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414175_132419987
ES_00032689	chr2	-	3674	20	FSM	ENSMUSG00000027346.16	ENSMUST00000110142.8	3703	20	31	-2	0	1	multi-exon	FALSE	canonical	3	30	junction_19	19.1733598654971	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTCCTGATTTGTTC	NA	False	NA	1	True	NA	NA	NA	132420137	132371000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414178_132419987
ES_00032693	chr2	-	2835	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	6	-13	6	13	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGCTGCATTTATTACAT	NA	False	NA	1	True	AATAAA	-36	NA	132657968	132646113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
ES_00032694	chr2	-	2945	11	FSM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	7	-4	6	4	multi-exon	FALSE	canonical	3	23	junction_6	111.30929880293	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGATACAATGCTGCAT	NA	False	NA	-8	True	AATAAA	-27	NA	132657968	132646122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
ES_00032695	chr2	-	3713	5	FSM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	0	2	0	-2	multi-exon	FALSE	canonical	3	9	junction_1	2.48746859276655	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGGATGTATTTTGTAAC	NA	False	NA	NA	False	AATAAA	-19	NA	132722811	132710226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154_132721836_132722713
ES_00032697	chr2	-	807	1	FSM	ENSMUSG00000083879.5	ENSMUST00000121500.2	807	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCAAGGATTCAAGCCA	NA	False	NA	NA	False	TTTAAA	-26	NA	134605550	134604743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_134604700_134605600
ES_00032698	chr2	-	2937	6	FSM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	0	-2	0	2	multi-exon	FALSE	canonical	3	17	junction_5	104.732802884292	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATACAATCCTTACTAAG	NA	False	NA	2	True	AATAAA	-22	NA	136733302	136715697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136733198
ES_00032700	chr2	-	5628	26	FSM	ENSMUSG00000027276.8	ENSMUST00000028735.8	5612	26	0	-16	0	16	multi-exon	TRUE	canonical	3	87	junction_14	16.9906327133512	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCTTATGGAATCCTT	NA	False	NA	15	True	ATTAAA	-36	NA	136958564	136923359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_136925402_136926201_136926353_136926494_136926627_136926841_136927076_136927165_136927276_136927837_136927952_136928996_136929083_136929535_136929564_136930031_136930149_136930315_136930430_136930516_136930631_136931131_136931246_136931684_136931850_136932774_136932926_136933355_136933530_136933869_136933917_136934416_136934531_136935126_136935241_136936372_136936487_136937366_136937487_136938112_136938244_136941975_136942037_136943500_136943756_136948786_136948839_136957323_136957630_136958096
ES_00032701	chr2	-	1463	5	FSM	ENSMUSG00000027276.8	ENSMUST00000133640.2	1463	5	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	16.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTTCCACTGGCACTG	NA	False	NA	NA	False	NA	NA	NA	136927869	136924812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_136925402_136926201_136926353_136926494_136927076_136927165_136927276_136927837
ES_00032702	chr2	-	2489	14	FSM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	0	-9	0	9	multi-exon	FALSE	canonical	3	23	junction_13	23.0823070642491	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCTTGTCTCTGACTA	NA	False	NA	NA	False	AATAAA	-27	NA	139908680	139675390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
ES_00032703	chr2	-	2267	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	0	-9	0	9	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCTTGTCTCTGACTA	NA	False	NA	NA	False	AATAAA	-27	NA	139908725	139675390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ES_00032705	chr2	-	519	2	Genic_Genomic	ENSMUSG00000080006.5	novel	438	1	NA	NA	0	46315	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTAAATTCAGTCCTACC	NA	False	NA	NA	False	NA	NA	NA	139915389	139868636	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_139868682_139914915
ES_00032706	chr2	-	3411	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	-15	0	15	multi-exon	TRUE	canonical	3	379	junction_8	12.585330053057	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGGTCTGTGTCGTTGT	6977	False	NA	3	True	AATAAA	-31	NA	140012484	139961787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
ES_00032707	chr2	-	790	2	FSM	ENSMUSG00000045624.16	ENSMUST00000153769.2	617	2	-173	0	-173	0	multi-exon	FALSE	canonical	3	400	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAGGAAAA	NA	False	NA	NA	False	AATACA	-25	NA	139997398	139990729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139990835_139996713
ES_00032708	chr2	-	443	2	FSM	ENSMUSG00000045624.16	ENSMUST00000151317.2	613	2	103	67	103	-67	multi-exon	FALSE	canonical	3	379	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGAAATTGACCAGGGTA	NA	False	NA	NA	False	NA	NA	NA	140000660	139998907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139999090_140000399
ES_00032710	chr2	-	3977	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.5	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGTATCCTTTTTACT	NA	False	NA	1	True	AATAAA	-36	NA	140513389	140500117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_140503672_140505180_140505380_140513165
ES_00032713	chr2	-	5178	24	FSM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	0	-1	0	1	multi-exon	FALSE	canonical	3	227	junction_23	53.514586460919	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTCTGTCTGATCTTC	9758	False	NA	0	True	ATTAAA	-21	NA	143853183	143789313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067_143832187_143852918
ES_00032714	chr2	-	5190	25	NNC	ENSMUSG00000027422.16	novel	5177	24	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	125	junction_23	70.0126476669275	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTTCTGTCTGATCTT	9721	False	NA	-1	True	ATTAAA	-20	NA	143853220	143789314	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067_143830534_143830557_143832187_143852918
ES_00032715	chr2	-	2697	3	FSM	ENSMUSG00000027422.16	ENSMUST00000037875.6	2701	3	0	4	0	-4	multi-exon	FALSE	canonical	3	17	junction_1	105	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATCCAGGAAGAGTCGT	9758	False	NA	-3	True	AATAAA	-28	NA	143853183	143827776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_143828090_143830067_143832187_143852918
ES_00032716	chr2	-	930	1	FSM	ENSMUSG00000082480.2	ENSMUST00000118911.2	886	1	-13	-31	-13	31	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTGCTATATATATATAT	4893	False	NA	NA	False	AATAAA	-8	NA	143985306	143984376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_143984400_143985300
ES_00032720	chr2	-	2424	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	-5	0	5	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGACTGTTTTCTTAC	NA	False	NA	NA	False	AAGAAA	-21	NA	144112492	144092037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
ES_00032721	chr2	-	2517	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	-5	0	5	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGACTGTTTTCTTAC	NA	False	NA	NA	False	AAGAAA	-21	NA	144112826	144092037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ES_00032727	chr2	-	2159	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	11	0	11	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392778	144384184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
ES_00032728	chr2	-	391	1	FSM	ENSMUSG00000084178.2	ENSMUST00000121742.2	464	1	116	-43	116	43	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTCTCTTTTGTCATT	NA	False	NA	NA	False	AATAAA	-22	NA	145352461	145352070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_145352100_145352500
ES_00032729	chr2	-	3412	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	16	0	16	0	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCACAGTGATTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	145776918	145759398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
ES_00032732	chr2	-	10939	41	FSM	ENSMUSG00000037110.21	ENSMUST00000109986.9	11030	41	0	91	0	-91	multi-exon	FALSE	canonical	3	23	junction_26	5.33291665038935	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCGATAGAAAGGACCATCA	NA	False	NA	NA	False	NA	NA	NA	146353924	146081889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_146086956_146090088_146090129_146102285_146102408_146156842_146156971_146169297_146169457_146175335_146175492_146176411_146176536_146182298_146182371_146183897_146184670_146187305_146187490_146188628_146188767_146189035_146189105_146190367_146190479_146195090_146195200_146199007_146199067_146199876_146200006_146203310_146203440_146229147_146229304_146229526_146229626_146230410_146230605_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
ES_00032734	chr2	-	469	1	FSM	ENSMUSG00000080870.2	ENSMUST00000119851.2	999	1	413	117	413	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGATGCCAGGGCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	146597212	146596743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_146596700_146597200
ES_00032735	chr2	-	1725	2	FSM	ENSMUSG00000054160.3	ENSMUST00000067020.3	1725	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATACGGATTGTTACCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	146927365	146925235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_146926410_146926814
ES_00032736	chr2	-	4311	10	FSM	ENSMUSG00000027438.15	ENSMUST00000136513.2	4311	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	1.6629588385662	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGACTGTTTTTTTGG	NA	False	NA	0	True	AATAAA	-18	NA	148574333	148535904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148551236_148551354_148554594_148554675_148574185
ES_00032737	chr2	-	830	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	39	-9	39	9	multi-exon	FALSE	canonical	3	2071	junction_1	68	502	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTCTGTCTCAGGATA	NA	False	NA	3	True	ATTAAA	-29	NA	148717457	148713632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_148713964_148714736_148714851_148717072
ES_00032738	chr2	-	4115	4	FSM	ENSMUSG00000068134.14	ENSMUST00000089207.13	4127	4	12	0	12	0	multi-exon	FALSE	canonical	3	35	junction_1	10.2089285540757	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCCTGAGACTCTTCA	NA	False	NA	1	True	NA	NA	NA	149978616	149956325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_149960121_149961484_149961549_149961744_149961872_149978487
ES_00032740	chr2	-	1728	1	Genic_Genomic	ENSMUSG00000074735.3	novel	NA	NA	NA	NA	164	818	mono-exon	FALSE	NA	NA	NA	NA	NA	264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGCAGGCAACAGAGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	150097347	150095619	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_150095600_150097300
ES_00032741	chr2	-	5629	5	NNC	ENSMUSG00000074731.4	novel	2734	4	NA	NA	0	3977	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	12.1860576069539	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGATATAATGGAGTAGGA	NA	False	NA	NA	False	ATTAAA	-42	NA	150327011	150308933	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_150311131_150312212_150315345_150316415_150316477_150316675_150316803_150326899
ES_00032742	chr2	-	2734	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAGAAAAAAAATCCAC	NA	False	NA	NA	False	NA	NA	NA	150327011	150312910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
ES_00032743	chr2	-	2652	1	FSM	ENSMUSG00000083325.4	ENSMUST00000121441.2	1380	1	235	-1507	235	1507	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATATCGATGCAATAAAAT	NA	False	NA	NA	False	AATAAA	-31	NA	150342530	150339878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150339900_150342500
ES_00032747	chr2	-	3618	14	FSM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_13	14.5093318267649	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	NA	False	NA	-5	True	AATAAA	-27	NA	150510178	150460024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150509804
ES_00032750	chr2	-	1996	13	FSM	ENSMUSG00000032046.16	ENSMUST00000056149.15	1999	13	0	3	0	-3	multi-exon	FALSE	canonical	2	181	junction_4	35.7897991363771	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAGGAATCAGAGTTTC	NA	False	NA	-8	True	AATAAA	-35	NA	150746661	150674415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
ES_00032751	chr2	-	1950	11	NNC	ENSMUSG00000032046.16	novel	1999	13	NA	NA	31	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	85.6268649431941	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCTACAAAGCAGGAATCA	NA	False	NA	-15	True	AATAAA	-28	NA	150746620	150674422	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681849_150688163_150688284_150690271_150690378_150700279_150700405_150746276
ES_00032752	chr2	-	3985	23	NIC	ENSMUSG00000068115.14	novel	5093	24	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	13.9923975816386	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTTAAAGTTTTAAATT	7630	False	NA	2	True	ATTAAA	-18	NA	150851251	150776438	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_150777360_150778866_150778981_150779473_150779642_150781772_150781887_150782591_150782751_150786500_150786571_150787003_150787109_150794404_150794713_150795225_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
ES_00032755	chr2	-	1453	2	FSM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	3	-62	3	62	multi-exon	FALSE	canonical	3	184	junction_1	0	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGATTGGACAGTTTGCT	NA	False	NA	61	True	AGTAAA	-26	NA	150881315	150871542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150872837_150881156
ES_00032756	chr2	-	3804	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	0	5	0	-5	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATCATTGTCTTTTGGT	NA	False	NA	NA	False	AATAGA	-15	NA	151583230	151557736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
ES_00032757	chr2	-	1752	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	2	0	2	0	multi-exon	FALSE	canonical	3	86	junction_1	0	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	False	NA	-1	True	AATAAA	-22	NA	151822137	151811317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_151812845_151821912
ES_00032760	chr2	-	2369	12	NNC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_11	165.622841479775	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174320	152158253	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173022_152173953
ES_00032761	chr2	-	2195	11	NNC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	3	6	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	221.250536722513	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCATGCTTGAGGGAAC	NA	False	NA	-6	True	ATTAAA	-22	NA	152174301	152158247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173022_152173953
ES_00032762	chr2	-	2390	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	-6	0	6	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCATGCTTGAGGGAAC	NA	False	NA	-6	True	ATTAAA	-22	NA	152174332	152158247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ES_00032763	chr2	-	2258	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	-6	0	6	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCATGCTTGAGGGAAC	NA	False	NA	-6	True	ATTAAA	-22	NA	152174573	152158247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ES_00032766	chr2	-	1595	2	FSM	ENSMUSG00000027466.16	ENSMUST00000128645.2	1595	2	0	0	0	0	multi-exon	FALSE	canonical	3	641	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAGAAAGACTAGGC	NA	False	NA	NA	False	NA	NA	NA	152166536	152164857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152166361_152166444
ES_00032767	chr2	-	2033	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	0	-7	0	7	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGACTTTCTCTTCTTCAA	NA	False	NA	3	True	AATAAA	-36	NA	152185952	152179334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
ES_00032769	chr2	-	4532	1	FSM	ENSMUSG00000051817.9	ENSMUST00000182625.2	4453	1	-84	5	-84	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAACTCAGTCTTGGTGTT	NA	False	NA	-8	True	NA	NA	NA	152240067	152235535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152235500_152240100
ES_00032770	chr2	-	3121	1	FSM	ENSMUSG00000074682.5	ENSMUST00000099207.5	3073	1	-50	2	-50	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTACTGTGTATTTTTTTT	NA	False	NA	-4	True	AATAAA	-14	NA	152256997	152253876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152253900_152257000
ES_00032771	chr2	-	2580	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	-12	0	8	multi-exon	FALSE	canonical	3	144	junction_2	91.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTCTGCGCCGCATGAG	NA	False	NA	3	True	AATAAA	-30	NA	152672586	152622579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152624203_152671346_152672023_152672305
ES_00032772	chr2	-	2424	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	-7	0	7	multi-exon	FALSE	canonical	3	148	junction_2	89.5	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTCTGCGCCGCATGA	NA	False	NA	2	True	AATAAA	-29	NA	152673648	152622580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152624203_152671346_152672023_152673522
ES_00032776	chr2	-	1245	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	37	-9	-13	9	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCACCCACCTCATTCTGT	8676	False	NA	NA	False	AATAAA	-30	NA	152857310	152850800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
ES_00032777	chr2	-	1271	5	FSM	ENSMUSG00000027472.15	ENSMUST00000150545.8	1299	5	37	-9	-13	9	multi-exon	FALSE	canonical	1	2	junction_4	103.576964137785	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCACCCACCTCATTCTGT	8676	False	NA	NA	False	AATAAA	-30	NA	152857310	152850800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857127
ES_00032781	chr2	-	3065	1	FSM	ENSMUSG00000074671.7	ENSMUST00000099194.4	3072	1	-1	8	-1	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAATTTAGGTCATAT	NA	False	NA	NA	False	AATAAA	-19	NA	153067362	153064297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_153064300_153067400
ES_00032782	chr2	-	5442	3	FSM	ENSMUSG00000051413.18	ENSMUST00000056924.14	5485	3	37	6	37	-6	multi-exon	FALSE	canonical	3	22	junction_1	0.5	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTTTTGAACTTGT	7341	False	NA	-5	True	ATTAAA	-18	NA	153083309	153069684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_153074640_153077719_153078093_153083195
ES_00032783	chr2	-	1850	2	FSM	ENSMUSG00000073236.5	ENSMUST00000128026.2	1898	2	0	48	0	-48	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACATGACATTTCCTGAC	9275	False	NA	NA	False	NA	NA	NA	153187730	153183124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_153184785_153187540
ES_00032784	chr2	-	5866	8	FSM	ENSMUSG00000061411.13	ENSMUST00000109784.2	5610	8	-114	-142	-114	138	multi-exon	FALSE	canonical	3	28	junction_7	27.1496232168391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTCAGACAAATAAGCC	NA	False	NA	NA	False	NA	NA	NA	153286513	153249243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153286276
ES_00032786	chr2	-	6888	11	FSM	ENSMUSG00000061411.13	ENSMUST00000035346.14	6399	11	-351	-138	-351	138	multi-exon	FALSE	canonical	3	34	junction_10	23.8863978029338	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTCAGACAAATAAGCC	NA	False	NA	NA	False	NA	NA	NA	153372242	153249243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153371361
ES_00032787	chr2	-	6710	11	NIC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	-328	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	26.7546257682667	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAGCTTCGACTATGTC	NA	False	NA	NA	False	AATAAA	-20	NA	153372219	153249380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153371361
ES_00032788	chr2	-	5590	8	NIC	ENSMUSG00000061411.13	novel	5610	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	31.3205937337838	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTACACTGAGCTTCGA	NA	False	NA	NA	False	AATAAA	-13	NA	153286399	153249387	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278268_153286276
ES_00032790	chr2	-	3209	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	0	1	0	-1	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTTATGGGTTTGTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	153474701	153458853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ES_00032794	chr2	-	2294	15	FSM	ENSMUSG00000027487.12	ENSMUST00000109731.8	2160	15	-133	-1	-133	1	multi-exon	FALSE	canonical	2	7	junction_14	23.0212856251934	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTACTTTTTTCAT	5256	False	NA	-8	True	AATAAA	-19	NA	154215063	154177298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600_154214775_154214881
ES_00032797	chr2	-	1859	13	NNC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	11.513277359447	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTGTCTCTTGTCTGTC	7325	False	NA	-7	True	AATAAA	-32	NA	154400772	154386310	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ES_00032798	chr2	-	1839	13	FSM	ENSMUSG00000027489.16	ENSMUST00000000895.13	1829	13	0	-10	0	10	multi-exon	TRUE	canonical	3	34	junction_6	10.0840220150494	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCTCTTGTCTGTCTG	7311	False	NA	-5	True	AATAAA	-34	NA	154400786	154386308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ES_00032799	chr2	-	2732	7	FSM	ENSMUSG00000027490.18	ENSMUST00000103145.11	2732	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	374.662255312108	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGTGTTTGTGTCGAAT	9502	False	NA	-3	True	AGTAAA	-14	NA	154411812	154401326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154411408
ES_00032800	chr2	-	2313	8	NNC	ENSMUSG00000027490.18	novel	2755	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	453.49652924892	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTGGGTTTGAAACTCT	9674	False	NA	-21	True	AATAAA	-16	NA	154411640	154401553	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_154402322_154402341_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154411408
ES_00032801	chr2	-	2756	7	FSM	ENSMUSG00000027490.18	ENSMUST00000000894.6	2755	7	0	-1	0	1	multi-exon	FALSE	canonical	0	0	junction_3	459.079392794851	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGGTTTGAAACTCTC	9674	False	NA	-20	True	AATAAA	-17	NA	154411640	154401552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154410986
ES_00032803	chr2	-	560	3	FSM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAAGTTTTCTGTTTTG	NA	False	NA	NA	False	AATAAA	-30	NA	154445608	154437165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154437491_154438121_154438185_154445436
ES_00032804	chr2	-	216	1	FSM	ENSMUSG00000097602.3	ENSMUST00000238256.2	1628	1	705	707	705	420	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGGTCATCCACTGGAA	NA	False	NA	NA	False	NA	NA	NA	154454652	154454436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154454400_154454700
ES_00032805	chr2	-	2552	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	-10	0	10	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	3111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTTCTGTA	3632	False	NA	2	True	AATAAA	-42	NA	154734855	154713319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ES_00032806	chr2	-	3785	3	FSM	ENSMUSG00000074656.13	ENSMUST00000147136.2	3785	3	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_1	580	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAAGATGAAATACTAG	3736	False	NA	-19	True	AAAAAG	-24	NA	154734751	154726262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154729728_154730102_154730281_154734609
ES_00032808	chr2	-	2548	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGTACCCTCTGTTGAC	NA	False	NA	-3	True	AATAAA	-35	NA	154916417	154901224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
ES_00032809	chr2	-	495	1	FSM	ENSMUSG00000082596.2	ENSMUST00000119431.2	629	1	53	81	53	-81	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCGGGCATGGACGTCAT	9666	False	NA	NA	False	NA	NA	NA	155041127	155040632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155040600_155041100
ES_00032810	chr2	-	1636	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	False	NA	0	True	AATAAA	-23	NA	155199350	155120162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ES_00032811	chr2	-	7114	15	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	0	55	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	44.4323034720994	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTTCATTGTAACTCAGA	NA	False	NA	45	True	AGTAAA	-4	NA	155315744	155232520	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155247394_155250371_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
ES_00032814	chr2	-	4140	15	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_14	51.9731582999674	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGTATGTTATTGGA	NA	False	NA	-19	True	AATAAA	-17	NA	155315741	155232584	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155291202_155291272_155315559
ES_00032815	chr2	-	4101	14	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	3	120	junction_7	19.2079865046321	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGTATGTTATTGGA	NA	False	NA	-19	True	AATAAA	-17	NA	155315771	155232584	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
ES_00032818	chr2	-	2579	15	FSM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	29	6	29	-6	multi-exon	FALSE	canonical	1	3	junction_14	5.44593089061054	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTCTGGCTTGATTT	736	False	NA	NA	False	ATTAAA	-18	NA	155356739	155332304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245_155348482_155356548
ES_00032819	chr2	-	1965	14	NNC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	22	32799	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	283.873982375671	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTCATTACTTGTTTAA	8372	False	NA	NA	False	NA	NA	NA	155434708	155372301	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155372331_155405105_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ES_00032820	chr2	-	1963	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8350	False	NA	-2	True	AATAAA	-19	NA	155434730	155405100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ES_00032824	chr2	-	3091	19	FSM	ENSMUSG00000038324.14	ENSMUST00000103140.5	3091	19	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_11	88.2006865682525	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTATTAAAGAACTTTATT	NA	False	NA	-30	True	AATAAA	-14	NA	155534252	155476227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492482_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
ES_00032827	chr2	-	1437	2	FSM	ENSMUSG00000074649.7	ENSMUST00000124586.2	1615	2	183	-5	183	5	multi-exon	FALSE	canonical	3	10	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAACCTATGAATCACTA	7282	False	NA	NA	False	NA	NA	NA	155661163	155659644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155661004_155661085
ES_00032828	chr2	-	1482	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	19	-1	19	1	multi-exon	TRUE	canonical	3	1052	junction_5	244.745255316625	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCTGTGTGTGTGTGTG	NA	False	NA	-2	True	ATTAAA	-23	NA	155668826	155661750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
ES_00032830	chr2	-	2633	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACTTTACTGTGTG	NA	False	NA	-58	True	NA	NA	NA	155772230	155688840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ES_00032831	chr2	-	3451	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	0	-10	0	7	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTTGTGTTTGGTGC	NA	False	NA	7	True	AATAAA	-28	NA	155953859	155913754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
ES_00032832	chr2	-	3502	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	0	-10	0	5	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCTCTTGTTGTGTTTGGT	NA	False	NA	5	True	AATAAA	-26	NA	155953863	155913756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
ES_00032834	chr2	-	1937	1	FSM	ENSMUSG00000103285.2	ENSMUST00000192167.2	1682	1	-292	37	-292	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAGTGAAACTGCAAATAA	1697	False	NA	NA	False	NA	NA	NA	155928503	155926566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155926600_155928500
ES_00032835	chr2	-	6669	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	0	-2	0	2	multi-exon	FALSE	canonical	3	245	junction_2	24	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCACAGTACTTCTTTGAG	NA	False	NA	0	True	AATAAA	-39	NA	155953876	155933875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155940293_155945268_155945350_155953705
ES_00032836	chr2	-	6692	3	FSM	ENSMUSG00000089824.11	ENSMUST00000109604.9	6635	3	93	-150	53	150	multi-exon	FALSE	canonical	3	132	junction_2	80.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGGATGCCTTGGGACGG	NA	False	NA	NA	False	NA	NA	NA	155953783	155933727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155940293_155945268_155945318_155953705
ES_00032837	chr2	-	228	1	NIC	ENSMUSG00000074643.13	novel	545	4	NA	NA	174	-23316	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATACTACCCCTCATAGA	920	False	NA	NA	False	ACTAAA	-41	NA	155944374	155944146	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_155944100_155944400
ES_00032838	chr2	-	2054	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	-3	0	3	multi-exon	FALSE	canonical	3	228	junction_1	23.0952135493242	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTTTTGAGCATC	3106	False	NA	1	True	AATAAA	-20	NA	155986106	155965555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ES_00032839	chr2	-	709	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	22	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCGCGGGTCAATGGGAC	3112	False	NA	0	True	TTTAAA	-6	NA	155986100	155983706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155984163_155985286_155985379_155985939
ES_00032840	chr2	-	2721	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	0	-10	0	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022087	155989158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ES_00032841	chr2	-	2811	18	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	383	junction_15	737.860411025805	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022104	155989158	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ES_00032842	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ES_00032843	chr2	-	2120	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022096	155989859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ES_00032844	chr2	-	2127	18	FSM	ENSMUSG00000027620.17	ENSMUST00000153514.8	2127	18	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_15	799.195928097666	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022104	155989859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
ES_00032855	chr2	-	1382	1	FSM	ENSMUSG00000082321.4	ENSMUST00000122112.2	639	1	-200	-543	-200	543	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAACAAAAAAAAAGAA	6582	False	NA	NA	False	AATAAA	-13	NA	156189960	156188578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156188600_156190000
ES_00032859	chr2	-	3009	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	2	6268	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	68.0636956583072	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGGTTTCTCTCGAGTT	NA	False	NA	-2	True	NA	NA	NA	156681810	156668700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_156671325_156679742_156679834_156680337_156680457_156681635
ES_00032860	chr2	-	3320	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	-72	-2374	0	2374	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCGAGACTTGATGGGG	NA	False	NA	32	True	NA	NA	NA	156681812	156672594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
ES_00032861	chr2	-	7034	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	0	6269	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	55.3915356550279	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGTTTCTCTCGAGTTA	NA	False	NA	-1	True	NA	NA	NA	156681812	156668699	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681635
ES_00032862	chr2	-	4543	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	0	2357	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	64.0097648800556	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTGGGTGCGCACCAT	NA	False	NA	15	True	NA	NA	NA	156681812	156672611	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_156675347_156675537_156676959_156679742_156679834_156680337_156680457_156681635
ES_00032863	chr2	-	3308	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-5	2342	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	67.0261143137509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGGTCTTTCGTGTTTCC	NA	False	NA	0	True	NA	NA	NA	156681725	156672626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_156675347_156675537_156675645_156679742_156679834_156680337_156680457_156681454
ES_00032866	chr2	-	339	1	FSM	ENSMUSG00000102323.2	ENSMUST00000193136.2	3346	1	-62	3069	-62	-3069	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTTTCCTGCCACAAGG	NA	False	NA	NA	False	NA	NA	NA	156691697	156691358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156691400_156691700
ES_00032867	chr2	-	1431	3	FSM	ENSMUSG00000085741.9	ENSMUST00000153616.9	1431	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	10	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAACTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	156704814	156694349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156694611_156695350_156696225_156704518
ES_00032869	chr2	-	2612	17	FSM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	53.8324948335111	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5927	False	NA	0	True	AATAAA	-22	NA	156833963	156769264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ES_00032870	chr2	-	2586	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5914	False	NA	0	True	AATAAA	-22	NA	156833976	156769264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ES_00032873	chr2	-	5431	10	ISM	ENSMUSG00000027635.16_ENSMUSG00000082163.3	ENSMUST00000103130.8	2636	11	-162	-2021	-162	917	intron_retention	FALSE	canonical	3	171	junction_9	21.9027029168029	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTCATTCAGATTGGC	7893	False	NA	NA	False	AATAAA	-19	NA	156849236	156835175	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767
ES_00032874	chr2	-	720	1	FSM	ENSMUSG00000082163.3	ENSMUST00000117941.3	720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGTCTTTCTATACAAAA	3078	False	NA	NA	False	NA	NA	NA	156836812	156836092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156836100_156836800
ES_00032875	chr2	-	4751	11	FSM	ENSMUSG00000027635.16_ENSMUSG00000082163.3	ENSMUST00000103130.8	2636	11	-97	-2018	-97	914	multi-exon	FALSE	canonical	3	12	junction_10	60.8885046622103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGCCTTCATTCAGATT	7958	False	NA	NA	False	AATAAA	-16	NA	156849171	156835178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156848283_156848894
ES_00032876	chr2	-	2080	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	8134	False	NA	-6	True	AATAAA	-30	NA	156848995	156837184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
ES_00032877	chr2	-	2017	11	NNC	ENSMUSG00000027635.16	novel	2080	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	63.1497426756436	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGTGTACACTATGTG	8635	False	NA	-15	True	AATAAA	-21	NA	156848494	156837193	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848447
ES_00032878	chr2	-	8007	15	FSM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	-138	-5	-138	5	multi-exon	FALSE	canonical	2	9	junction_5	3.79580864445326	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTTTATGTCTTGGTAA	7381	False	NA	3	True	NA	NA	NA	156921312	156857713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156860420_156862109_156863458_156864736_156864808_156865716_156865789_156869306_156869559_156871399_156871568_156872438_156872544_156872707_156872939_156875177_156875304_156879089_156879231_156881746_156882923_156883813_156883877_156895438_156895598_156902107_156902333_156920148
ES_00032879	chr2	-	3922	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	8	-4	8	4	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTCGAGTTACTGAATA	NA	False	NA	-1	True	ATTAAA	-22	NA	156977177	156939448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ES_00032880	chr2	-	3994	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	-86	-1872	0	4	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTCGAGTTACTGAATA	NA	False	NA	-1	True	ATTAAA	-22	NA	156977126	156939448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ES_00032881	chr2	-	1996	16	FSM	ENSMUSG00000027639.17	ENSMUST00000088523.11	1996	16	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	41.6778118427539	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTCCAGAGGATCTG	NA	False	NA	NA	False	NA	NA	NA	156977142	156943279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ES_00032882	chr2	-	215	1	ISM	ENSMUSG00000027639.17	ENSMUST00000109549.3	3245	14	31376	271	6210	-271	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGTGGTGGCGCACGCC	7645	False	NA	NA	False	NA	NA	NA	156945750	156945535	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_156945500_156945800
ES_00032883	chr2	-	4862	22	FSM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	43.0171615808876	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTACTTTTTACTGCT	NA	False	NA	NA	False	NA	NA	NA	157046432	156987812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ES_00032884	chr2	-	1821	2	ISM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	26199	-5	14056	5	3prime_fragment	FALSE	canonical	3	92	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTATACATGTTTTTG	7551	False	NA	-1	True	NA	NA	NA	157020247	157016900	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_157017613_157019138
ES_00032885	chr2	-	2388	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	0	-5	0	5	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTATACATGTTTTTG	NA	False	NA	-1	True	NA	NA	NA	157046446	157016900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ES_00032887	chr2	-	667	1	FSM	ENSMUSG00000082329.2	ENSMUST00000121060.2	117	1	9	-559	9	559	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAATACTTTCATCCCAG	5551	False	NA	NA	False	NA	NA	NA	157370896	157370229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_157370200_157370900
ES_00032888	chr2	-	2056	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408257	157398281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_157400248_157408167
ES_00032889	chr2	-	2108	2	FSM	ENSMUSG00000067787.11	ENSMUST00000088494.3	2108	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408281	157398281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_157400248_157408139
ES_00032891	chr2	-	619	2	NNC	ENSMUSG00000087547.2	novel	629	2	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTACATCTGGCCAAATAT	8713	False	NA	-14	True	NA	NA	NA	157439234	157437503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_157437903_157439014
ES_00032895	chr2	-	3144	1	FSM	ENSMUSG00000085385.8	ENSMUST00000186993.2	3144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTCTCGTGAGTTCTT	NA	False	NA	2	True	NA	NA	NA	158198763	158195619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_158195600_158198800
ES_00032896	chr2	-	3916	4	FSM	ENSMUSG00000085385.8	ENSMUST00000149667.8	3896	4	0	-20	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.8884444373331	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8356	False	NA	3	True	AATAAA	-32	NA	158203433	158197684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_158197962_158199117_158202520_158202862_158202991_158203324
ES_00032897	chr2	-	2007	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8347	False	NA	3	True	AATAAA	-32	NA	158203442	158197684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
ES_00032898	chr2	-	967	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8356	False	NA	3	True	AATAAA	-32	NA	158203433	158197684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
ES_00032901	chr2	-	3548	4	FSM	ENSMUSG00000050700.12	ENSMUST00000057169.5	3547	4	0	-1	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5.55777733351102	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTTTTCTTCACTA	NA	False	NA	NA	False	ATTAAA	-15	NA	160754248	160748356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160751237_160751526_160751751_160752661_160752785_160753927
ES_00032902	chr2	-	10564	37	FSM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	-53	4	0	-4	multi-exon	TRUE	canonical	3	24	junction_8	18.6792285774042	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGATTTAAAAAGGAAGTTC	NA	False	NA	-27	True	AATAAA	-20	NA	160950995	160788901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088_160808661_160809707_160809917_160811258_160811476_160812065_160812127_160819378_160819440_160821288_160821419_160823494_160823599_160824543_160824634_160824977_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ES_00032903	chr2	-	9979	35	NIC	ENSMUSG00000057133.15	novel	10515	37	NA	NA	11	-105	combination_of_known_junctions	FALSE	canonical	3	17	junction_34	18.0291958532317	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAGCCTCTTCATCTAA	NA	False	NA	-128	True	TTTAAA	-14	NA	160894487	160789002	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088_160808661_160809707_160809917_160811258_160811476_160812065_160812127_160819378_160819440_160821288_160821419_160823494_160823599_160824543_160824634_160824977_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884050_160894307
ES_00032904	chr2	-	675	5	FSM	ENSMUSG00000057133.15	ENSMUST00000130265.2	675	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.2653426176871	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAAGGGTCTTCTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	160894498	160871758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307
ES_00032905	chr2	-	388	1	FSM	ENSMUSG00000083374.2	ENSMUST00000119175.2	476	1	-8	96	-8	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCCAAAGCTCCAGCTA	NA	False	NA	NA	False	NA	NA	NA	161324966	161324578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_161324600_161325000
ES_00032906	chr2	-	750	1	FSM	ENSMUSG00000083567.4	ENSMUST00000118946.2	630	1	-8	-112	-8	112	mono-exon	FALSE	NA	NA	NA	NA	NA	390	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGACATGCGTACAGA	NA	False	NA	NA	False	AATAAA	-38	NA	162741451	162740701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_162740700_162741500
ES_00032908	chr2	-	930	3	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1760	100940	multi-exon	FALSE	non_canonical	0	0	junction_1	349	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCACACACACAATGGC	909	False	NA	NA	False	NA	NA	NA	162931535	162828013	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_162828050_162928950_162929768_162931458
ES_00032909	chr2	-	782	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1779	-2	multi-exon	FALSE	canonical	3	735	junction_1	0	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTCCGGGCTGTGCTGGTT	890	False	NA	-5	True	AATAAA	-15	NA	162931554	162928955	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_162929642_162931458
ES_00032911	chr2	-	1621	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	0	-1	0	1	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTGTGTGTTGTTTCTTA	NA	False	NA	-3	True	NA	NA	NA	163261448	163247740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
ES_00032912	chr2	-	1726	2	FSM	ENSMUSG00000035399.13	ENSMUST00000139142.2	773	2	-953	0	-953	0	multi-exon	FALSE	canonical	3	367	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAGGACTACTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	163254538	163248505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163249010_163253316
ES_00032913	chr2	-	4003	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	-36	0	-36	0	multi-exon	FALSE	canonical	3	58	junction_1	0	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCGGAGTTTGCTGTGT	NA	False	NA	-8	True	ATTAAA	-25	NA	163314585	163308298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163312039_163314322
ES_00032917	chr2	-	1268	11	NNC	ENSMUSG00000017697.4	novel	1688	12	NA	NA	-5393	-230	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_10	21.0049994049036	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCAGCACATGGTGAAT	9414	False	NA	-6	True	AATAAA	-18	NA	163578179	163568733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163578126
ES_00032918	chr2	-	4105	6	FSM	ENSMUSG00000035226.6	ENSMUST00000044734.3	4962	6	0	857	0	-857	multi-exon	TRUE	canonical	0	0	junction_1	1.26491106406735	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGTCCCCCGTGATTTT	NA	False	NA	NA	False	NA	NA	NA	163760603	163702527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163706042_163706785_163706926_163707372_163707475_163707711_163707825_163721013_163721153_163760506
ES_00032919	chr2	-	1923	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5881	False	NA	-5	True	ATTAAA	-16	NA	163913089	163895459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
ES_00032920	chr2	-	2430	7	FSM	ENSMUSG00000018322.11	ENSMUST00000018466.4	2302	7	-128	0	-61	0	multi-exon	FALSE	canonical	3	55	junction_6	196.655155030322	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5820	False	NA	-5	True	ATTAAA	-16	NA	163913150	163895459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912386
ES_00032922	chr2	-	2460	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	-2	0	2	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCAGTTTTATTTTTGGT	NA	False	NA	49	True	AATAAA	-26	NA	164285106	164266164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ES_00032923	chr2	-	1017	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACCTTTAATAGAACTA	8167	False	NA	2	True	AATAAA	-22	NA	164646801	164634684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
ES_00032924	chr2	-	1151	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	1	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	26.9250812440743	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8167	False	NA	-1	True	AATAAA	-19	NA	164646801	164634687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ES_00032926	chr2	-	2226	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699462	164681437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
ES_00032930	chr2	-	3153	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	26	0	-12	0	multi-exon	FALSE	canonical	3	73	junction_1	19.1790702249582	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCTAATCTTTCTTGG	3008	False	NA	-6	True	ATTAAA	-15	NA	164876761	164842276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
ES_00032933	chr2	-	1919	9	ISM	ENSMUSG00000017664.17	ENSMUST00000109299.8	1926	10	4155	0	0	0	3prime_fragment	TRUE	canonical	3	229	junction_4	16.0657827384787	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	9929	False	NA	-34	True	AATAAA	-18	NA	165125520	165118473	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168
ES_00032934	chr2	-	1960	10	NIC	ENSMUSG00000017664.17	novel	1843	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	63	junction_9	61.9452167365908	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5705	False	NA	-34	True	AATAAA	-18	NA	165129744	165118473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129703
ES_00032935	chr2	-	1843	11	FSM	ENSMUSG00000017664.17	ENSMUST00000017808.14	1843	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	88.3464204141854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5702	False	NA	-34	True	AATAAA	-18	NA	165129747	165118473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125521_165129703
ES_00032936	chr2	-	1995	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	13	0	13	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5673	False	NA	-34	True	AATAAA	-18	NA	165129776	165118473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
ES_00032938	chr2	-	3466	21	FSM	ENSMUSG00000017670.17	ENSMUST00000094329.11	3466	21	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_20	30.5759300757965	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTCCTATCCACACC	NA	False	NA	-17	True	AATAAA	-15	NA	165168399	165131074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
ES_00032941	chr2	-	1123	9	NNC	ENSMUSG00000017670.17	novel	639	6	NA	NA	24	1224	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	114.629225658206	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACAAACTTAAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	165168375	165149608	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165149982_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
ES_00032943	chr2	-	5043	5	NNC	ENSMUSG00000017667.10	novel	8205	5	NA	NA	23	-3172	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	10.1827059272082	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGTGAGACTTTTA	4563	False	NA	-3	True	ATTAAA	-14	NA	165230156	165219355	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165223807_165224610_165224704_165225158_165225319_165228845_165228909_165229880
ES_00032945	chr2	-	1897	2	FSM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	0	-17	0	17	multi-exon	FALSE	canonical	3	240	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGAGTTTTTGCTGCTC	NA	False	NA	0	True	NA	NA	NA	165335244	165332012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165333632_165334966
ES_00032946	chr2	-	4126	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109269.8	6188	24	69287	-1158	42972	1	3prime_fragment	FALSE	canonical	3	58	junction_8	38.060601348376	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165651070	165626070	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438
ES_00032947	chr2	-	4196	20	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	-21	-2	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	168.212551861858	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATGGCGTTTCTTCAT	NA	False	NA	-5	True	ATTAAA	-16	NA	165726589	165626076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
ES_00032948	chr2	-	4195	20	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	46	1	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	165.186623243575	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165740890	165626070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ES_00032949	chr2	-	2481	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	1	123	junction_1	153.293431147776	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTTGTGTTTAATTTAG	NA	False	NA	39	True	AATAGA	-19	NA	165726671	165669042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527
ES_00032951	chr2	-	2321	12	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	123	junction_1	140.18134653853	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGAATGGTTGTGTTTA	NA	False	NA	33	True	AATAGA	-13	NA	165740900	165669048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ES_00032953	chr2	-	4580	21	FSM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	203.951336107416	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTTCTCAGTGGTGT	NA	False	NA	NA	False	TATAAA	-14	NA	165997583	165915008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
ES_00032954	chr2	-	3927	21	FSM	ENSMUSG00000006800.15	ENSMUST00000088086.4	3927	21	0	0	0	0	multi-exon	FALSE	canonical	3	542	junction_20	98.8976617519343	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTATCTTGGGACTT	NA	False	NA	-16	True	NA	NA	NA	165997205	165915839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
ES_00032955	chr2	-	897	5	FSM	ENSMUSG00000006800.15	ENSMUST00000139266.2	897	5	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_4	354.768938888398	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCCCCGAGGACTCAGCA	NA	False	NA	NA	False	NA	NA	NA	165996726	165935435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996597
ES_00032957	chr2	-	1316	2	Intergenic	novelGene_2427	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCCTACTGATGGCTT	NA	False	NA	-16	True	GATAAA	-14	NA	166338034	166334158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_166335201_166337760
ES_00032961	chr2	-	6523	40	FSM	ENSMUSG00000039621.14	ENSMUST00000036719.12	6533	40	10	0	10	0	multi-exon	FALSE	canonical	3	38	junction_37	7.40390997863488	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGTGGCCTGCTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	166555742	166408261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029_166425243_166426951_166427226_166427652_166427864_166428442_166428605_166428966_166429155_166430873_166430980_166431429_166431567_166432353_166432440_166434120_166434270_166434715_166434809_166435679_166435823_166438205_166438279_166441525_166441602_166443446_166443497_166443643_166443748_166444735_166444837_166451657_166451806_166453547_166453698_166455061_166455181_166459752_166459887_166463091_166463254_166475285_166475388_166480234_166480340_166486668_166486792_166488893_166488966_166555434
ES_00032962	chr2	-	3569	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109235.8	3569	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_8	51.6000192196774	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTATTTTCCTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	166838198	166789468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ES_00032963	chr2	-	2976	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838185	166790066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ES_00032965	chr2	-	316	1	Intergenic	novelGene_2430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTCTCAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166856309	166855993	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_166856000_166856300
ES_00032966	chr2	-	7218	14	FSM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	5.9245752350676	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCATCTCTTATCTGT	960	False	NA	NA	False	AATAAA	-18	NA	166904935	166877712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915_166886164_166888811_166888927_166889460_166889611_166890352_166890502_166892233_166892366_166897073_166898862_166901951_166902063_166904429
ES_00032967	chr2	-	254	1	FSM	ENSMUSG00000081946.2	ENSMUST00000121305.2	556	1	281	21	281	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCATGGCCCGGGAATA	NA	False	NA	NA	False	AAGAAA	-4	NA	166929378	166929124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166929100_166929400
ES_00032969	chr2	-	4219	9	FSM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	0	-9	0	9	multi-exon	FALSE	canonical	3	218	junction_3	15.1244834622542	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCTCTCTGTCTAGCTGC	NA	False	NA	8	True	AGTAAA	-32	NA	167191103	167140354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579_167147768_167148510_167148628_167149463_167149589_167151142_167151257_167155006_167155142_167190837
ES_00032970	chr2	-	4016	3	FSM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	0	-4	0	4	multi-exon	FALSE	canonical	3	52	junction_2	1	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAAGATTTTTTTCTTTA	4582	False	NA	NA	False	ATTAAA	-21	NA	167334807	167323048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167326500_167327077_167327514_167334678
ES_00032971	chr2	-	1732	5	NNC	ENSMUSG00000078923.11	novel	836	5	NA	NA	0	29651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	986.988475110019	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAATGACCTTGAACTCA	9446	False	NA	NA	False	NA	NA	NA	167473887	167419906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_167419934_167449765_167451168_167452223_167452350_167459748_167459898_167473859
ES_00032972	chr2	-	1793	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	0	-207	0	1	multi-exon	FALSE	canonical	3	27	junction_1	1070	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGGCTGTGCCCTTCTTC	9441	False	NA	NA	False	AATAAA	-20	NA	167473892	167449556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167451168_167459748_167459898_167473859
ES_00032973	chr2	-	2024	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	18	-1	18	1	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGGCTGTGCCCTTCTTC	9336	False	NA	NA	False	AATAAA	-20	NA	167473997	167449556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
ES_00032978	chr2	-	2342	6	FSM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	0	-13	0	13	multi-exon	FALSE	canonical	3	221	junction_2	14.6205335059977	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTGTTTGTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	167503476	167484514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167486103_167486683_167486897_167487951_167488097_167488887_167488980_167496527_167496648_167503292
ES_00032979	chr2	-	925	2	FSM	ENSMUSG00000090213.2	ENSMUST00000142148.2	861	2	-64	0	-64	0	multi-exon	FALSE	canonical	3	249	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGGTCTGTCTCGGTGA	5697	False	NA	NA	False	NA	NA	NA	167487161	167485655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167486103_167486683
ES_00032981	chr2	-	1366	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	-61	4	-61	-4	multi-exon	FALSE	canonical	3	24	junction_1	0	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTATACATTAGCTACTT	7068	False	NA	-8	True	NA	NA	NA	167996494	167994526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_167995672_167996273
ES_00032983	chr2	-	5288	12	FSM	ENSMUSG00000093752.2	ENSMUST00000138667.2	5288	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	157.884464505636	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGCTTTTATTACACAC	NA	False	NA	-1	True	AATAAA	-25	NA	168072284	168022905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ES_00032984	chr2	-	2293	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAATGTTATCGAATTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	168072299	168050967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ES_00032985	chr2	-	4700	2	FSM	ENSMUSG00000078919.11	ENSMUST00000136582.2	4959	2	260	-1	260	0	multi-exon	FALSE	canonical	3	459	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168057629	168052200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168052557_168053285
ES_00032988	chr2	-	3698	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	35	-4	35	4	multi-exon	TRUE	canonical	3	71	junction_27	47.3339708993171	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCTTTTCATTTTTAAT	NA	False	NA	-19	True	GATAAA	-20	NA	168576224	168476353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
ES_00032989	chr2	-	3695	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109176.8	3691	28	0	-4	0	4	multi-exon	FALSE	canonical	3	157	junction_27	35.3190436202576	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCTTTTCATTTTTAAT	6461	False	NA	-19	True	GATAAA	-20	NA	168583882	168476353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168583601
ES_00032991	chr2	-	5086	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	0	-13	0	13	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCTTTTCTGGTATGGT	NA	False	NA	-4	True	AATAAA	-35	NA	168609121	168590238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
ES_00032992	chr2	-	3754	4	FSM	ENSMUSG00000027547.18	ENSMUST00000103074.2	3741	4	0	-13	0	13	multi-exon	FALSE	canonical	3	42	junction_2	261.72037665332	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCTTTTCTGGTATGGT	NA	False	NA	-4	True	AATAAA	-35	NA	168609121	168590238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168592381_168594373_168594661_168597685_168598721_168608831
ES_00032993	chr2	-	2921	9	FSM	ENSMUSG00000027551.16	ENSMUST00000109162.9	2848	9	-73	0	-73	0	multi-exon	FALSE	canonical	3	7	junction_4	271.408824469655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168797580	168735250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ES_00032994	chr2	-	2460	5	NIC	ENSMUSG00000027551.16	novel	2848	9	NA	NA	-5	387	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	9.69535971483266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCATGGTGGTGTACTTC	NA	False	NA	NA	False	TATAAA	-14	NA	168754558	168734863	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168754153
ES_00032995	chr2	-	2442	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	0	-4	0	4	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTGTATAGTTTGTAT	NA	False	NA	4	True	AATAAA	-33	NA	168797192	168767276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ES_00032996	chr2	-	1009	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	-1	True	TATAAA	-19	NA	168797209	168776732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ES_00032997	chr2	-	967	2	FSM	ENSMUSG00000027551.16	ENSMUST00000136242.2	1352	2	0	385	0	-385	multi-exon	FALSE	canonical	3	656	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACCAGGTTTCTAAGCC	NA	False	NA	NA	False	NA	NA	NA	168797186	168792879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168793699_168797038
ES_00032998	chr2	-	5670	6	FSM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	16	-1	16	1	multi-exon	FALSE	canonical	3	10	junction_5	10.6695829346793	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCGTGGTTTTCATTG	NA	False	NA	1	True	AATATA	-21	NA	169973124	169950561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169972967
ES_00032999	chr2	-	5609	6	ISM	ENSMUSG00000052056.15	ENSMUST00000109155.8	5670	7	10926	-4	-532	1	3prime_fragment	FALSE	canonical	2	3	junction_5	12.9460418661458	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCGTGGTTTTCATTG	NA	False	NA	1	True	AATATA	-21	NA	169973672	169950561	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169973576
ES_00033000	chr2	-	1467	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	1	-1097	1	-1	multi-exon	FALSE	canonical	3	30	junction_2	23.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAAAGCTTTTGATTCTA	4147	False	NA	NA	False	AATAAA	-15	NA	170191714	170188911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_170190069_170191101_170191384_170191686
ES_00033001	chr2	-	1784	2	ISM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	-68	-939	-13	-1	intron_retention	FALSE	canonical	3	77	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAAAGCTTTTGATTCTA	4133	False	NA	NA	False	AATAAA	-15	NA	170191728	170188911	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_170190069_170191101
ES_00033003	chr2	-	564	3	Intergenic	novelGene_2456	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	35	junction_2	1.5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	0	True	NA	NA	NA	170515770	170512871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_170513139_170515342_170515518_170515648
ES_00033008	chr2	-	838	2	Intergenic	novelGene_2457	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGCTTTCCACAGTTTC	6276	False	NA	-1	True	ATTAAA	-22	NA	172364624	172360216	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_172360918_172364487
ES_00033009	chr2	-	3668	7	FSM	ENSMUSG00000008999.8	ENSMUST00000009143.8	3670	7	0	2	0	-2	multi-exon	TRUE	canonical	3	82	junction_3	13.8734358477712	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGTGTGTATTTGTGTC	NA	False	NA	-1	True	AATAAA	-28	NA	172782114	172709806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
ES_00033010	chr2	-	773	4	FSM	ENSMUSG00000027514.15	ENSMUST00000109116.3	770	4	0	-3	0	3	multi-exon	FALSE	canonical	1	1	junction_2	0.816496580927726	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCATCCCAAGTATGC	1412	False	NA	NA	False	AATAAA	-28	NA	173060703	173055524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_173055703_173057469_173057659_173058564_173058802_173060534
ES_00033011	chr2	-	4531	4	FSM	ENSMUSG00000038400.16	ENSMUST00000036248.13	4538	4	0	7	0	-7	multi-exon	FALSE	canonical	3	84	junction_3	9.39266853573691	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAATTTTCTCCCTTTT	1082	False	NA	NA	False	AATAAA	-18	NA	173118326	173066257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_173070137_173070368_173070420_173076099_173076255_173117880
ES_00033012	chr2	-	2399	5	FSM	ENSMUSG00000055897.14	ENSMUST00000154908.2	2399	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.15331193145904	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACCGAAGGGAAAAAAA	3619	False	NA	NA	False	NA	NA	NA	173433106	173428378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_173428909_173429625_173429715_173430959_173431044_173431297_173431468_173431580
ES_00033014	chr2	-	763	6	FSM	ENSMUSG00000055897.14	ENSMUST00000142320.8	755	6	0	-8	0	8	multi-exon	FALSE	canonical	2	7	junction_1	7.55248303539968	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501332	173437890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_173438193_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
ES_00033017	chr2	-	1064	1	FSM	ENSMUSG00000065521.3	ENSMUST00000083587.3	79	1	-366	-619	-366	619	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGGTGTTGTTCTCAT	NA	False	NA	NA	False	AATAAA	-15	NA	174109284	174108220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174108200_174109300
ES_00033020	chr2	-	1473	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	21	-53	21	53	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACATACAACTCA	5350	False	NA	53	True	NA	NA	NA	174280811	174269232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
ES_00033021	chr2	-	1697	2	FSM	ENSMUSG00000016252.8	ENSMUST00000149191.2	1697	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTTTTGTTTCTGTT	NA	False	NA	-7	True	AATAAA	-19	NA	174305842	174302867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174303015_174304292
ES_00033022	chr2	-	432	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	0	-11	0	11	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTCTACTCTTTTCTTT	NA	False	NA	7	True	AATAAA	-33	NA	174305898	174302853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174303015_174304292_174304423_174305757
ES_00033023	chr2	-	1557	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	0	-4	0	4	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGCTCTTCCCATCTCT	NA	False	NA	0	True	NA	NA	NA	174314874	174306855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ES_00033024	chr2	-	405	2	FSM	ENSMUSG00000016257.16	ENSMUST00000147944.2	394	2	0	-11	0	11	multi-exon	FALSE	canonical	3	956	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGCAGCCTGAGGCCTGT	NA	False	NA	NA	False	NA	NA	NA	174314684	174310953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174311299_174314624
ES_00033027	chr2	-	564	3	FSM	ENSMUSG00000078905.9	ENSMUST00000109066.2	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	14.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGCAAAAGGAACACACAG	NA	False	NA	NA	False	NA	NA	NA	174909574	174905098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174905454_174905660_174905788_174909492
ES_00033030	chr2	-	703	3	FSM	ENSMUSG00000090093.9	ENSMUST00000109059.8	703	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	19.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGGTAAAGCCTTAAC	NA	False	NA	NA	False	NA	NA	NA	174983792	174974274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_174974783_174974988_174975116_174983724
ES_00033032	chr2	-	4516	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	-4	True	NA	NA	NA	175017664	175008047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
ES_00033033	chr2	-	1854	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	175048710	175036706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
ES_00033034	chr2	-	1956	6	FSM	ENSMUSG00000078903.11	ENSMUST00000109056.8	1956	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	88.9246872358852	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	175048710	175036706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175043445_175043548_175044851_175044907_175048573
ES_00033036	chr2	-	4402	5	FSM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	105.8828952192	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175179990	175163747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175167842_175168998_175169060_175169264_175169392_175176415_175176471_175179925
ES_00033037	chr2	-	5638	4	NIC	ENSMUSG00000078899.10	novel	4402	5	NA	NA	-79	0	intron_retention	FALSE	canonical	3	21	junction_2	108.76988962433	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175180069	175163747	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_175169060_175169264_175169392_175176415_175176471_175179925
ES_00033040	chr2	-	1458	4	FSM	ENSMUSG00000095545.8	ENSMUST00000179061.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.0079342596338	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGTAAACAATGTGGTAA	NA	False	NA	NA	False	NA	NA	NA	175495439	175484749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175485960_175487112_175487174_175487379_175487507_175495379
ES_00033042	chr2	-	3438	3	FSM	ENSMUSG00000078889.12	ENSMUST00000109020.9	3438	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	41.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTATTGCCTTCACTTG	NA	False	NA	NA	False	NA	NA	NA	175592886	175581149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175584326_175584530_175584658_175592751
ES_00033043	chr2	-	6121	4	FSM	ENSMUSG00000078889.12	ENSMUST00000123863.2	267	4	-132	-5722	0	3836	multi-exon	FALSE	canonical	3	11	junction_1	42.523196284172	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTAAATGTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	175592886	175577313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175583112_175584264_175584326_175584530_175584658_175592751
ES_00033045	chr2	-	4443	5	NNC	ENSMUSG00000089756.3	novel	2939	4	NA	NA	0	3630	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_2	15.3133928311136	458	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGGATGAATAAACTAAG	NA	False	NA	NA	False	NA	NA	NA	175722844	175707043	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_175707364_175709489_175713362_175714514_175714576_175714781_175714909_175722781
ES_00033047	chr2	-	489	3	ISM	ENSMUSG00000089756.3	ENSMUST00000108949.3	2939	4	0	3603	0	-3123	5prime_fragment	FALSE	canonical	3	25	junction_1	10	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGTAGAGCCATGCTGTA	NA	False	NA	NA	False	NA	NA	NA	175722844	175714276	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_175714576_175714781_175714909_175722781
ES_00033049	chr2	-	5967	4	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3611	2906	intron_retention	FALSE	canonical	3	43	junction_2	52.563189485503	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTAAAAAAAAGGAGGA	NA	False	NA	NA	False	AATAAA	-24	NA	175895229	175880477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
ES_00033052	chr2	-	1458	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	105.749179140497	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176328136	176315986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
ES_00033053	chr2	-	358	3	NNC	ENSMUSG00000083170.2	novel	2330	3	NA	NA	-8956	-2060	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.5	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGCATGAAAGAATACACAA	NA	False	NA	NA	False	NA	NA	NA	176556297	176545703	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176545786_176546938_176547000_176556082
ES_00033055	chr2	-	3833	5	FSM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	0	-10	0	10	multi-exon	FALSE	canonical	3	18	junction_3	30.886890422961	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGATAGACAGAAACATTC	NA	False	NA	NA	False	AATAAA	-35	NA	176619602	176605832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619484
ES_00033058	chr2	-	4378	3	FSM	ENSMUSG00000083111.2	ENSMUST00000121755.2	1958	3	0	-2420	0	2420	multi-exon	FALSE	non_canonical	0	0	junction_2	7.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGTTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176748631	176742888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176747091_176748242_176748304_176748516
ES_00033059	chr2	-	447	1	FSM	ENSMUSG00000082023.4	ENSMUST00000121260.2	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACGGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	176777595	176777148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176777100_176777600
ES_00033061	chr2	-	615	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5317	153746	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	214.097070403954	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	176964146	176802700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176803028_176958542_176958604_176958795_176958923_176964046
ES_00033062	chr2	-	2739	3	FSM	ENSMUSG00000082765.4	ENSMUST00000121798.2	914	3	-116	-1709	-116	1709	multi-exon	FALSE	canonical	3	75	junction_1	11.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCGTGGTGGCGCACGCC	NA	False	NA	NA	False	NA	NA	NA	176819618	176815546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176817983_176819124_176819186_176819376
ES_00033064	chr2	-	3867	5	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10833	74495	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	250.624220697043	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAATAGAAACCATGAATA	NA	False	NA	NA	False	NA	NA	NA	176969662	176881951	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176884682_176956598_176957402_176958542_176958604_176958795_176958922_176969515
ES_00033065	chr2	-	3855	7	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078868.4	novel	1050	3	NA	NA	-76	74495	multi-exon	FALSE	non_canonical	0	0	junction_4	228.335036489998	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAATAGAAACCATGAATA	NA	False	NA	NA	False	NA	NA	NA	177016176	176881951	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_176884682_176956598_176957402_176958542_176958604_176958795_176958922_176969515_176969535_177012927_177012965_177016097
ES_00033066	chr2	-	1218	4	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-42926	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	141.424498899197	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATAAGCGAACACATAC	NA	False	NA	NA	False	NA	NA	NA	176941140	176885149	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176941032
ES_00033067	chr2	-	477	5	NIC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	2	724	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	120.131958695428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTCCTGCAAATACATAA	NA	False	NA	NA	False	NA	NA	NA	176898212	176885917	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
ES_00033068	chr2	-	2863	2	Genic_Genomic	ENSMUSG00000085513.2	novel	877	1	NA	NA	0	318229	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTCCTGGTCTTGATG	NA	False	NA	NA	False	NA	NA	NA	177234350	176915244	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_176917065_177233307
ES_00033069	chr2	-	4137	5	NNC	ENSMUSG00000083817.2	novel	2135	3	NA	NA	-4729	2018	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	29.8360101219986	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTTGCTTCCTGGTCTTG	2349	False	NA	NA	False	NA	NA	NA	176925485	176915247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176918442_176918525_176919213_176920366_176920428_176920629_176920757_176925417
ES_00033070	chr2	-	4191	6	NNC	ENSMUSG00000083817.2	novel	2135	3	NA	NA	-20345	2018	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.9225667348241	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTTGCTTCCTGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	176941101	176915247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176918442_176918525_176919213_176920366_176920428_176920629_176920757_176937155_176937209_176941032
ES_00033073	chr2	-	6961	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5317	5718	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACATAGGCTCAGAACTG	NA	False	NA	NA	False	NA	NA	NA	176964146	176950728	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
ES_00033075	chr2	-	1326	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-3605	-1067	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	276.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTGCTCTTTTCAATG	NA	False	NA	-65	True	NA	NA	NA	176962434	176957513	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176958604_176958795_176958923_176962325
ES_00033076	chr2	-	376	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5316	-2007	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_2	147.5	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCACTGCTTTCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	176964145	176958453	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176958604_176958795_176958923_176964046
ES_00033077	chr2	-	1766	6	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5563	17023	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	20.970455407549	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCTGCAGTTCATAA	NA	False	NA	NA	False	NA	NA	NA	177021663	176989289	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176990532_177007618_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
ES_00033079	chr2	-	9679	6	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5527	8033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.2320512433443	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGTTTGAGTGTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	177021627	176998279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_177005497_177005644_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
ES_00033082	chr2	-	476	3	Fusion	ENSMUSG00000078867.10_ENSMUSG00000078868.4	novel	1581	4	NA	NA	-161216	-2362	multi-exon	FALSE	canonical	3	14	junction_1	34	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGTTCAAAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	177251329	177008674	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_177008918_177081219_177081347_177251223
ES_00033083	chr2	-	485	6	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_2	99.4633600880244	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079693	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ES_00033084	chr2	-	588	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090113	177079693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
ES_00033087	chr2	-	1415	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
ES_00033090	chr2	-	1348	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	226.200992236747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAAAGACCGTACAGGA	2348	False	NA	NA	False	NA	NA	NA	177269992	177260996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177262087_177263226_177263288_177263479_177263607_177269922
ES_00033093	chr2	-	286	3	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-37	-983	combination_of_known_splicesites	FALSE	canonical	3	155	junction_2	266.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACACCATGACTGTAAC	2300	False	NA	NA	False	NA	NA	NA	177270040	177261979	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_177262087_177263226_177263288_177269922
ES_00033094	chr2	-	1337	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-11	1162	0	861	5prime_fragment	FALSE	canonical	3	827	junction_2	197.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATACAGATAAAAAGACTC	2337	False	NA	NA	False	NA	NA	NA	177270003	177262158	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_177263288_177263479_177263607_177269922
ES_00033095	chr2	-	531	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	396.148400925153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAACAGATATGTTACTG	2337	False	NA	NA	False	NA	NA	NA	177270003	177263019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177263288_177263479_177263607_177266761_177266817_177269922
ES_00033098	chr2	-	1807	5	FSM	ENSMUSG00000078862.11	ENSMUST00000108930.9	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	8.13557004763649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177599090	177587329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000
ES_00033099	chr2	-	4544	4	NIC	ENSMUSG00000078862.11	novel	1807	5	NA	NA	5	2806	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	27.5358352374178	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177599076	177584523	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_177588804_177589962_177590024_177590229_177590357_177599000
ES_00033101	chr2	-	962	4	FSM	ENSMUSG00000078861.9	ENSMUST00000108924.9	962	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	38.724095283887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTAAACATTGTTGTAA	NA	False	NA	NA	False	NA	NA	NA	177720218	177709487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177710194_177711347_177711409_177711615_177711743_177720150
ES_00033102	chr2	-	1572	2	FSM	ENSMUSG00000078861.9	ENSMUST00000123265.2	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATACAGATAAAAAGA	NA	False	NA	0	True	NA	NA	NA	177720248	177710268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177711743_177720150
ES_00033103	chr2	-	2116	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	51	-795	0	0	multi-exon	FALSE	canonical	3	51	junction_1	29	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTAAACATTGTTGTAA	NA	False	NA	NA	False	NA	NA	NA	177720218	177709487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177711409_177711615_177711743_177720150
ES_00033104	chr2	-	1274	1	FSM	ENSMUSG00000083410.2	ENSMUST00000120800.2	946	1	-163	-165	-163	165	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTCTTTTCCAAGGAC	NA	False	NA	NA	False	NA	NA	NA	179255523	179254249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179254200_179255500
ES_00033105	chr2	-	4380	15	FSM	ENSMUSG00000039117.17	ENSMUST00000227325.2	4380	15	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	16.8935744335785	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCACGCCTGCTTTTCC	NA	False	NA	0	True	ATTAAA	-17	NA	179618439	179553944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205
ES_00033106	chr2	-	4499	15	FSM	ENSMUSG00000039117.17	ENSMUST00000041618.13	4416	15	-79	-4	-79	4	multi-exon	TRUE	canonical	3	23	junction_8	22.5641941390083	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCTGCTTTTCCATTC	NA	False	NA	4	True	ATTAAA	-21	NA	179618518	179553940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573772_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205
ES_00033107	chr2	-	4174	16	NNC	ENSMUSG00000039117.17	novel	4380	15	NA	NA	-79	4	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_15	24.7328840929552	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCTGCTTTTCCATTC	NA	False	NA	4	True	ATTAAA	-21	NA	179618518	179553940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205_179618088_179618376
ES_00033108	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684226	179678166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ES_00033113	chr2	-	2998	10	FSM	ENSMUSG00000038990.15	ENSMUST00000108891.2	2975	10	50	-73	0	73	multi-exon	FALSE	canonical	0	0	junction_5	39.9001841018062	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAACAGCAAAAGCAG	NA	False	NA	72	True	AATAAA	-17	NA	179915239	179900259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909_179904019_179904870_179904949_179906006_179906100_179906195_179906268_179914892
ES_00033114	chr2	-	4565	7	FSM	ENSMUSG00000038990.15	ENSMUST00000136706.8	4561	7	0	-4	0	1	multi-exon	FALSE	canonical	3	108	junction_5	11.9826263120125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGCTTGTCTCCTTT	NA	False	NA	0	True	AGTAAA	-19	NA	179915256	179900331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179904949_179906006_179906100_179906195_179906268_179914892
ES_00033115	chr2	-	2860	9	NIC	ENSMUSG00000038990.15	novel	2975	10	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	51.4823999052103	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAACATACTTCCTTGCT	NA	False	NA	-10	True	AGTAAA	-9	NA	179915255	179900341	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909_179904019_179904870_179904949_179906006_179906100_179914892
ES_00033118	chr2	-	2282	6	NIC	ENSMUSG00000038932.14	novel	2225	6	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_3	22.1666416039959	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCCCAGTGAGTCGCTTT	5315	False	NA	NA	False	AATAAA	-19	NA	180284555	180263748	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_180264508_180277046_180277189_180280196_180280444_180282093_180282257_180282673_180282858_180283768
ES_00033119	chr2	-	8735	16	FSM	ENSMUSG00000038914.16	ENSMUST00000087517.10	8723	16	0	-12	0	12	multi-exon	FALSE	canonical	3	16	junction_15	49.7552230647419	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCAACCTTGACCCCT	NA	False	NA	-7	True	AATAAA	-26	NA	180344143	180299744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180304377_180311183_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
ES_00033120	chr2	-	4906	15	FSM	ENSMUSG00000038914.16	ENSMUST00000103057.8	4906	15	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_9	45.219194046379	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAAAAAAAG	NA	False	NA	NA	False	AGTAAA	-41	NA	180351792	180310080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
ES_00033121	chr2	-	4281	15	FSM	ENSMUSG00000038914.16	ENSMUST00000103056.10	4281	15	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_14	51.2897431764095	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAGACACATAGCTCT	NA	False	NA	NA	False	NA	NA	NA	180344143	180311005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
ES_00033122	chr2	-	5285	6	FSM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	-55	-617	-55	617	multi-exon	FALSE	canonical	3	159	junction_5	13.3626344707921	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTTGTTGGTTACATTC	NA	False	NA	NA	False	AATATA	-18	NA	180351847	180322233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
ES_00033123	chr2	-	4913	6	FSM	ENSMUSG00000038914.16	ENSMUST00000130986.8	4898	6	0	-15	0	0	multi-exon	FALSE	canonical	3	16	junction_5	68.2864554651945	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTATCCTTCTGTGT	NA	False	NA	-7	True	TTTAAA	-31	NA	180344143	180322850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
ES_00033124	chr2	-	2646	7	NIC	ENSMUSG00000038914.16	novel	4613	6	NA	NA	4	1891	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	68.3091420593824	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTAGATCACTGAGTTT	NA	False	NA	-6	True	AGTAAA	-13	NA	180351788	180324925	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180332314_180332427_180333656_180333842_180351702
ES_00033126	chr2	-	204	1	Intergenic	novelGene_2469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTTTTATGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	180393627	180393423	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_180393400_180393600
ES_00033127	chr2	-	3207	6	NNC	ENSMUSG00000038848.15	novel	3184	5	NA	NA	0	59547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.575329866276	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	180562742	180486622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_180486646_180546169_180547462_180552479_180554001_180560927_180561008_180562104_180562130_180562476
ES_00033131	chr2	-	957	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	0	-7	0	7	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCATCCCTGGTCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	180596492	180576557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
ES_00033135	chr2	-	4229	10	FSM	ENSMUSG00000038705.14	ENSMUST00000049032.13	4121	10	-106	-2	-106	2	multi-exon	FALSE	canonical	3	53	junction_5	10.3171916936948	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTCTCTTGTAATG	6070	False	NA	-2	True	AATAAA	-18	NA	180929934	180893239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180896217_180896934_180897058_180897287_180897426_180897664_180897737_180900776_180900935_180902087_180902192_180906773_180906902_180907607_180907706_180919741_180919915_180929676
ES_00033136	chr2	-	482	3	FSM	ENSMUSG00000038705.14	ENSMUST00000123148.2	888	3	175	231	175	-231	multi-exon	FALSE	canonical	3	70	junction_2	3	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCATACATAGAAAAATCAG	NA	False	NA	NA	False	NA	NA	NA	180897749	180896798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180897058_180897287_180897426_180897664
ES_00033137	chr2	-	757	7	FSM	ENSMUSG00000038705.14	ENSMUST00000130475.8	765	7	8	0	8	0	multi-exon	FALSE	canonical	3	5	junction_6	27.4631065653946	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGACCTGTGAGGACCC	7145	False	NA	NA	False	NA	NA	NA	180928859	180897710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180897737_180900776_180900935_180902087_180902192_180906773_180906902_180907607_180907706_180919741_180919915_180928789
ES_00033138	chr2	-	665	3	FSM	ENSMUSG00000038705.14	ENSMUST00000147665.2	642	3	0	-23	0	23	multi-exon	FALSE	canonical	3	79	junction_1	2	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGTCCTCTTTTGTAT	6180	False	NA	NA	False	AAAAAG	-26	NA	180929824	180907361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180907706_180919741_180919915_180929676
ES_00033139	chr2	-	1077	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	59	0	59	0	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180956234	180948251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
ES_00033140	chr2	-	2315	7	FSM	ENSMUSG00000038671.16	ENSMUST00000185118.8	2318	7	0	3	0	1	multi-exon	FALSE	canonical	3	22	junction_2	105.887387770635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGTTAGCCAGTCACAA	6138	False	NA	31	True	AATAAA	-15	NA	181007135	180999624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181001355_181001431_181001533_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ES_00033142	chr2	-	2267	7	FSM	ENSMUSG00000038671.16	ENSMUST00000170190.8	2483	7	20	196	20	-1	multi-exon	FALSE	canonical	2	4	junction_6	111.15554667022	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGTTGGGGTGACATT	6096	False	NA	-23	True	AGTAAA	-11	NA	181007177	180999678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181007011
ES_00033149	chr2	-	1798	14	NNC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	39.5073208705281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGTGTGGCAGAATGTA	4590	False	NA	-2	True	AATAAA	-20	NA	181223758	181210944	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211689_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ES_00033151	chr2	-	1846	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	3	0	0	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGTGTGGCAGAATGTA	4547	False	NA	-2	True	AATAAA	-20	NA	181223801	181210944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ES_00033152	chr2	-	1742	14	NNC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	30.2142252636738	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATCGTGTGGCAGAAT	4588	False	NA	-5	True	AATAAA	-17	NA	181223760	181210947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212349_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ES_00033158	chr2	-	5361	15	FSM	ENSMUSG00000000823.17	ENSMUST00000128553.8	5357	15	0	-4	0	2	multi-exon	FALSE	canonical	3	20	junction_9	11.5053226369186	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGGCTGAGTTTGT	9321	False	NA	1	True	AATAAA	-28	NA	181232713	181223893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231975_181232262_181232406_181232652
ES_00033166	chr2	-	2205	5	FSM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	-64	-10	-50	7	multi-exon	FALSE	canonical	3	8	junction_4	19.6850196850295	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGTCTCTGGGGAGC	21	True	NA	5	True	AATAAA	-21	NA	181241055	181237003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239387_181240724
ES_00033167	chr2	-	1958	6	FSM	ENSMUSG00000002458.14	ENSMUST00000108776.8	1216	6	-97	-645	0	1	multi-exon	FALSE	canonical	2	7	junction_5	50.8660987299006	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTTCTTTCAAGTTG	NA	False	NA	-14	True	AATAAA	-15	NA	181335700	181330213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335155
ES_00033168	chr2	-	888	6	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	48.4090900554844	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTTCTTTCAAGTTG	NA	False	NA	-14	True	AATAAA	-15	NA	181335723	181330213	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ES_00033173	chr2	+	219	1	Intergenic	novelGene_2147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGCTATATTTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	3273991	3274210	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_3274000_3274200
ES_00033174	chr2	+	208	1	Intergenic	novelGene_2148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGTATTTTATATGAA	NA	False	NA	NA	False	NA	NA	NA	4343028	4343236	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_4343000_4343200
ES_00033175	chr2	+	998	1	Intergenic	novelGene_2155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTATTATCTTTAAAATC	NA	False	NA	NA	False	NA	NA	NA	14353264	14354262	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_14353300_14354300
ES_00033176	chr2	+	218	1	Intergenic	novelGene_2157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGGAAGAGCCTTGAACA	NA	False	NA	NA	False	NA	NA	NA	15009427	15009645	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_15009400_15009600
ES_00033177	chr2	+	209	1	Intergenic	novelGene_2162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAAGACATGAAGAAAAACA	NA	False	NA	NA	False	NA	NA	NA	18024407	18024616	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_18024400_18024600
ES_00033180	chr2	+	1023	1	Intergenic	novelGene_2165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAGCAACACTTTACAAAA	NA	False	NA	NA	False	NA	NA	NA	20503860	20504883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_20503900_20504900
ES_00033181	chr2	+	365	1	Intergenic	novelGene_2168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTATTCTTCACCCAC	4496	False	NA	NA	False	NA	NA	NA	20904656	20905021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_20904700_20905000
ES_00033182	chr2	+	203	1	Intergenic	novelGene_2169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTTCAACTGTT	NA	False	NA	NA	False	NA	NA	NA	21772034	21772237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_21772000_21772200
ES_00033183	chr2	+	204	1	Intergenic	novelGene_2174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTAAAGTTTCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	22816190	22816394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_22816200_22816400
ES_00033184	chr2	+	293	1	Intergenic	novelGene_2175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGTGAGTACCAGGACA	2218	False	NA	NA	False	NA	NA	NA	22930777	22931070	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_22930800_22931100
ES_00033185	chr2	+	254	1	Intergenic	novelGene_2176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGTTGTACCCCCTAAC	NA	False	NA	NA	False	NA	NA	NA	23485101	23485355	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_23485100_23485400
ES_00033186	chr2	+	222	1	Intergenic	novelGene_2177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATCTTTTTAAGTTACA	NA	False	NA	NA	False	NA	NA	NA	24803652	24803874	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_24803700_24803900
ES_00033187	chr2	+	695	1	Intergenic	novelGene_2178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAACCTTCTGCTACCAT	NA	False	NA	NA	False	NA	NA	NA	24882673	24883368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_24882700_24883400
ES_00033190	chr2	+	200	1	Intergenic	novelGene_2181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCACTTTTATTGTAAAA	1822	False	NA	NA	False	NA	NA	NA	25220597	25220797	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_25220600_25220800
ES_00033191	chr2	+	281	1	Intergenic	novelGene_2183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACCCTGTCTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	26150568	26150849	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_26150600_26150800
ES_00033192	chr2	+	236	1	Intergenic	novelGene_2185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTCTTGTTATGCTTGG	8721	False	NA	NA	False	NA	NA	NA	26510595	26510831	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_26510600_26510800
ES_00033193	chr2	+	200	1	Intergenic	novelGene_2188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGATTTTCAAAAGGGTC	NA	False	NA	NA	False	NA	NA	NA	26766455	26766655	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_26766500_26766700
ES_00033194	chr2	+	215	1	Intergenic	novelGene_2189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAATAAGAACAGCACATC	NA	False	NA	NA	False	NA	NA	NA	27796313	27796528	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_27796300_27796500
ES_00033196	chr2	+	203	1	Intergenic	novelGene_2190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	28495261	28495464	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_28495300_28495500
ES_00033198	chr2	+	218	1	Intergenic	novelGene_2191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAGGACACAGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	28925437	28925655	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_28925400_28925700
ES_00033199	chr2	+	204	1	Intergenic	novelGene_2192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAACCTTTGTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	29446868	29447072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_29446900_29447100
ES_00033200	chr2	+	230	1	Intergenic	novelGene_2196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGGTTTTTCAAGATA	NA	False	NA	NA	False	NA	NA	NA	29949664	29949894	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_29949700_29949900
ES_00033201	chr2	+	287	1	Intergenic	novelGene_2198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCCTCGAACCAGAA	NA	False	NA	NA	False	NA	NA	NA	30161059	30161346	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_30161100_30161300
ES_00033203	chr2	+	234	1	Intergenic	novelGene_2199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1448	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAATTGGCCA	NA	False	NA	NA	False	NA	NA	NA	30745257	30745491	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_30745300_30745500
ES_00033204	chr2	+	232	1	Intergenic	novelGene_2200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCAGGCTGGTCATTGGA	NA	False	NA	NA	False	NA	NA	NA	30772897	30773129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_30772900_30773100
ES_00033205	chr2	+	249	1	Intergenic	novelGene_2203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	378	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTAATTTGATGTTTG	NA	False	NA	NA	False	AAAACA	-8	NA	31118884	31119133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_31118900_31119100
ES_00033206	chr2	+	245	1	Intergenic	novelGene_2205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATGAAATTCTAATTCAG	NA	False	NA	NA	False	NA	NA	NA	31597150	31597395	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_31597200_31597400
ES_00033207	chr2	+	229	1	Intergenic	novelGene_2206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31799132	31799361	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_31799100_31799400
ES_00033208	chr2	+	212	1	Intergenic	novelGene_2209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAATACTAAGATTGAGT	NA	False	NA	NA	False	NA	NA	NA	32034367	32034579	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32034400_32034600
ES_00033209	chr2	+	204	1	Intergenic	novelGene_2212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCTGGATTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	32358824	32359028	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32358800_32359000
ES_00033210	chr2	+	216	1	Intergenic	novelGene_2215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGGCTTTTAAAAAAACAT	6264	False	NA	NA	False	NA	NA	NA	32531289	32531505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32531300_32531500
ES_00033212	chr2	+	214	1	Intergenic	novelGene_2220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAATACATAAATCTCA	NA	False	NA	NA	False	NA	NA	NA	33753816	33754030	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_33753800_33754000
ES_00033214	chr2	+	228	1	Intergenic	novelGene_2232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAAACAGTGGTACTTT	NA	False	NA	NA	False	NA	NA	NA	35821307	35821535	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_35821300_35821500
ES_00033216	chr2	+	239	1	Intergenic	novelGene_2239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAAAGACACTTTTTAC	NA	False	NA	NA	False	NA	NA	NA	38966711	38966950	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_38966700_38967000
ES_00033217	chr2	+	467	1	Intergenic	novelGene_2240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTATCAGGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	40412605	40413072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_40412600_40413100
ES_00033218	chr2	+	717	1	Intergenic	novelGene_2242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTAATCTTATTATAAC	NA	False	NA	NA	False	NA	NA	NA	41487816	41488533	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_41487800_41488500
ES_00033219	chr2	+	216	1	Intergenic	novelGene_2250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGCACTTTTGTCCATT	NA	False	NA	NA	False	NA	NA	NA	44718297	44718513	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_44718300_44718500
ES_00033220	chr2	+	237	1	Intergenic	novelGene_2251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTATATTTTAGGGCTGGA	NA	False	NA	NA	False	AATAAA	-39	NA	45026126	45026363	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_45026100_45026400
ES_00033222	chr2	+	889	1	Intergenic	novelGene_2253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTATGTTTTCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	50882759	50883648	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_50882800_50883600
ES_00033223	chr2	+	229	1	Intergenic	novelGene_2256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGTCTATTTTTTTAA	2544	False	NA	NA	False	NA	NA	NA	57119444	57119673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_57119400_57119700
ES_00033225	chr2	+	547	1	Intergenic	novelGene_2262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAACACCTAAAAAATACAA	5719	False	NA	NA	False	NA	NA	NA	61818671	61819218	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_61818700_61819200
ES_00033229	chr2	+	231	1	Intergenic	novelGene_2264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAAAGATGAAGGGGCA	4021	False	NA	NA	False	NA	NA	NA	69398515	69398746	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69398500_69398700
ES_00033231	chr2	+	209	1	Intergenic	novelGene_2267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTAGCCGCTTCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	69667828	69668037	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69667800_69668000
ES_00033232	chr2	+	1567	1	Intergenic	novelGene_2268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACTTACTATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	69705064	69706631	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69705100_69706600
ES_00033233	chr2	+	310	1	Intergenic	novelGene_2271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACAGACTTGGCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	69887434	69887744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69887400_69887700
ES_00033238	chr2	+	206	1	Intergenic	novelGene_2281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACTTTCTGGGTATA	NA	False	NA	NA	False	NA	NA	NA	73668447	73668653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_73668400_73668700
ES_00033239	chr2	+	222	1	Intergenic	novelGene_2285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTTTTTTTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75478282	75478504	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_75478300_75478500
ES_00033246	chr2	+	233	1	Intergenic	novelGene_2294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	333	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTCTGTAGACGAGGCT	NA	False	NA	NA	False	NA	NA	NA	87325180	87325413	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_87325200_87325400
ES_00033247	chr2	+	1432	1	Intergenic	novelGene_2295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGTTCAAGAAAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	88339139	88340571	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_88339100_88340600
ES_00033248	chr2	+	291	1	Intergenic	novelGene_2296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTGTGCTGTAGATGGT	NA	False	NA	NA	False	NA	NA	NA	88340830	88341121	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_88340800_88341100
ES_00033249	chr2	+	244	1	Intergenic	novelGene_2297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAGAGGTAGGACCAC	NA	False	NA	NA	False	NA	NA	NA	88836585	88836829	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_88836600_88836800
ES_00033250	chr2	+	209	1	Intergenic	novelGene_2299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGCAGCTGCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	90389961	90390170	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_90390000_90390200
ES_00033252	chr2	+	220	1	Intergenic	novelGene_2308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTGGAGAGATGGCTCA	4560	False	NA	NA	False	NA	NA	NA	91968434	91968654	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_91968400_91968700
ES_00033253	chr2	+	209	1	Intergenic	novelGene_2309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTCAGCTTCTTGAGTA	NA	False	NA	NA	False	NA	NA	NA	92025537	92025746	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_92025500_92025700
ES_00033254	chr2	+	287	1	Intergenic	novelGene_2314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACCCCCTCCCCACTT	NA	False	NA	NA	False	NA	NA	NA	96865082	96865369	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_96865100_96865400
ES_00033256	chr2	+	275	1	Intergenic	novelGene_2315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCTTCTTCTTACTACA	NA	False	NA	NA	False	NA	NA	NA	101499680	101499955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_101499700_101500000
ES_00033259	chr2	+	221	1	Intergenic	novelGene_2319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGGGATTTTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	103662817	103663038	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_103662800_103663000
ES_00033260	chr2	+	210	1	Intergenic	novelGene_2322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCTAAGCTTTTATGCT	NA	False	NA	NA	False	NA	NA	NA	104255146	104255356	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_104255100_104255400
ES_00033262	chr2	+	205	1	Intergenic	novelGene_2327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	434	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTGACTTCTGTTGCCC	NA	False	NA	NA	False	NA	NA	NA	105445712	105445917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_105445700_105445900
ES_00033263	chr2	+	210	1	Intergenic	novelGene_2328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTCTTTTTATCTGC	NA	False	NA	NA	False	NA	NA	NA	106802377	106802587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_106802400_106802600
ES_00033264	chr2	+	2029	1	Intergenic	novelGene_2329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAAGCAGGCTGAGC	NA	False	NA	NA	False	AATAAA	-36	NA	108887843	108889872	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_108887800_108889900
ES_00033265	chr2	+	2264	1	Intergenic	novelGene_2332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTTAACTAGCGCTCGG	NA	False	NA	NA	False	NA	NA	NA	110295134	110297398	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_110295100_110297400
ES_00033269	chr2	+	201	1	Intergenic	novelGene_2338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	119325153	119325354	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_119325200_119325400
ES_00033270	chr2	+	236	1	Intergenic	novelGene_2341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTTAAAAATATGGAAC	5450	False	NA	NA	False	AAAACA	-3	NA	119624179	119624415	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_119624200_119624400
ES_00033271	chr2	+	293	1	Intergenic	novelGene_2342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTAAAGCCAATAGAAGTC	NA	False	NA	NA	False	AATAAA	-30	NA	119689126	119689419	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_119689100_119689400
ES_00033272	chr2	+	512	1	Intergenic	novelGene_2343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTGCATCTTTAACA	NA	False	NA	NA	False	NA	NA	NA	119785579	119786091	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_119785600_119786100
ES_00033273	chr2	+	215	1	Intergenic	novelGene_2344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGGTGATTTTCAAAGT	NA	False	NA	NA	False	NA	NA	NA	120512716	120512931	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_120512700_120512900
ES_00033274	chr2	+	963	1	Intergenic	novelGene_2346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATCCTAAAACAACTACCT	NA	False	NA	NA	False	NA	NA	NA	120628879	120629842	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_120628900_120629800
ES_00033276	chr2	+	224	1	Intergenic	novelGene_2348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATGATTTAAAGATTTTT	8192	False	NA	NA	False	NA	NA	NA	121238564	121238788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121238600_121238800
ES_00033277	chr2	+	217	1	Intergenic	novelGene_2350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGGTTTTTTGAGAC	909	False	NA	NA	False	NA	NA	NA	121423375	121423592	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121423400_121423600
ES_00033278	chr2	+	239	1	Intergenic	novelGene_2351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTGGGATTTTCAACCA	NA	False	NA	NA	False	NA	NA	NA	121569521	121569760	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121569500_121569800
ES_00033279	chr2	+	208	1	Intergenic	novelGene_2356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAATTCTGATCAGAT	NA	False	NA	NA	False	NA	NA	NA	126431353	126431561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_126431400_126431600
ES_00033280	chr2	+	224	1	Intergenic	novelGene_2357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTTGGGAGGCAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	126520889	126521113	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_126520900_126521100
ES_00033281	chr2	+	213	1	Intergenic	novelGene_2358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCATTACTTTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	126536951	126537164	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_126537000_126537200
ES_00033282	chr2	+	216	1	Intergenic	novelGene_2361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCATTTTCTGAACACT	NA	False	NA	NA	False	NA	NA	NA	127108530	127108746	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_127108500_127108700
ES_00033283	chr2	+	213	1	Intergenic	novelGene_2363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTACTCTTTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	128658660	128658873	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_128658700_128658900
ES_00033284	chr2	+	207	1	Intergenic	novelGene_2367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGGTTTTTATTGTCA	NA	False	NA	NA	False	NA	NA	NA	130621056	130621263	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_130621100_130621300
ES_00033285	chr2	+	212	1	Intergenic	novelGene_2368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCCTCTTAATATTCA	NA	False	NA	NA	False	NA	NA	NA	130663976	130664188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_130664000_130664200
ES_00033286	chr2	+	291	1	Intergenic	novelGene_2370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACACACTCTTAACCACT	NA	False	NA	NA	False	NA	NA	NA	131010222	131010513	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_131010200_131010500
ES_00033287	chr2	+	205	1	Intergenic	novelGene_2371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGACAAAGAGAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	131275252	131275457	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_131275300_131275500
ES_00033288	chr2	+	207	1	Intergenic	novelGene_2372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCCTCCAAGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	134371662	134371869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_134371700_134371900
ES_00033289	chr2	+	232	1	Intergenic	novelGene_2373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGGAAATATATTATAATAA	NA	False	NA	NA	False	NA	NA	NA	135275057	135275289	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_135275100_135275300
ES_00033290	chr2	+	213	1	Intergenic	novelGene_2374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCTCTGGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	139947436	139947649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_139947400_139947600
ES_00033291	chr2	+	402	1	Intergenic	novelGene_2376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTAGTTTTTGATG	NA	False	NA	NA	False	NA	NA	NA	142419931	142420333	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_142419900_142420300
ES_00033292	chr2	+	203	1	Intergenic	novelGene_2377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTGGAGTCCTCAATTT	NA	False	NA	NA	False	AAAAAG	-1	NA	142955558	142955761	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_142955600_142955800
ES_00033293	chr2	+	204	1	Intergenic	novelGene_2380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	144071220	144071424	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_144071200_144071400
ES_00033295	chr2	+	208	1	Intergenic	novelGene_2381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	345	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCACAGGCCCTCTTCG	NA	False	NA	NA	False	NA	NA	NA	145505603	145505811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_145505600_145505800
ES_00033296	chr2	+	405	1	Intergenic	novelGene_2383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTCCATGACTATTTA	NA	False	NA	NA	False	NA	NA	NA	147805260	147805665	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_147805300_147805700
ES_00033297	chr2	+	255	1	Intergenic	novelGene_2384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCAGAACTCTAATGACA	NA	False	NA	NA	False	TTTAAA	-2	NA	148490250	148490505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_148490200_148490500
ES_00033298	chr2	+	224	1	Intergenic	novelGene_2392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTAGTGGTTCTTAACC	2957	False	NA	NA	False	NA	NA	NA	153123337	153123561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_153123300_153123600
ES_00033299	chr2	+	203	1	Intergenic	novelGene_2394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACATAACCTTTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	153322755	153322958	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_153322800_153323000
ES_00033301	chr2	+	205	1	Intergenic	novelGene_2398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCGATTCTTAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	154495685	154495890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_154495700_154495900
ES_00033302	chr2	+	226	1	Intergenic	novelGene_2399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAGATAAGTCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	154782716	154782942	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_154782700_154782900
ES_00033303	chr2	+	363	1	Intergenic	novelGene_2400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCAGGTCTCTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	156031623	156031986	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_156031600_156032000
ES_00033304	chr2	+	217	1	Intergenic	novelGene_2401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACCATTTTTAATGTTG	NA	False	NA	NA	False	NA	NA	NA	156943873	156944090	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_156943900_156944100
ES_00033307	chr2	+	242	1	Intergenic	novelGene_2413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	421	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGGAAAACATTTAAGTAG	NA	False	NA	NA	False	NA	NA	NA	160306657	160306899	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_160306700_160306900
ES_00033308	chr2	+	214	1	Intergenic	novelGene_2414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGGAGATTCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	161054130	161054344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_161054100_161054300
ES_00033309	chr2	+	757	1	Intergenic	novelGene_2415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTCTGACTCCTAACAC	NA	False	NA	NA	False	NA	NA	NA	162760990	162761747	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_162761000_162761700
ES_00033310	chr2	+	210	1	Intergenic	novelGene_2416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	452	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAACACTTTTTCATGT	3925	False	NA	NA	False	NA	NA	NA	163318420	163318630	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_163318400_163318600
ES_00033311	chr2	+	202	1	Intergenic	novelGene_2419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGGGAAGCTGAGGTT	9972	False	NA	NA	False	NA	NA	NA	164300249	164300451	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_164300200_164300500
ES_00033312	chr2	+	217	1	Intergenic	novelGene_2431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGACAAGTGATCTCAC	NA	False	NA	NA	False	NA	NA	NA	167037764	167037981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_167037800_167038000
ES_00033314	chr2	+	274	1	Intergenic	novelGene_2434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGATCTTGCTCGATTTG	NA	False	NA	NA	False	GATAAA	-17	NA	167981857	167982131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_167981900_167982100
ES_00033315	chr2	+	202	1	Intergenic	novelGene_2435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGTAAATGCCATAACAC	NA	False	NA	NA	False	NA	NA	NA	167999070	167999272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_167999100_167999300
ES_00033316	chr2	+	274	1	Intergenic	novelGene_2438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTTTTTCTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	168152798	168153072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168152800_168153100
ES_00033317	chr2	+	211	1	Intergenic	novelGene_2440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCTCTAGTTCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	168631300	168631511	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168631300_168631500
ES_00033318	chr2	+	235	1	Intergenic	novelGene_2441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAGCAAAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	168633576	168633811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168633600_168633800
ES_00033319	chr2	+	222	1	Intergenic	novelGene_2443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCGTAGATTTTAAAATA	NA	False	NA	NA	False	NA	NA	NA	168719820	168720042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168719800_168720000
ES_00033320	chr2	+	206	1	Intergenic	novelGene_2445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTCTTCTTCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	168750132	168750338	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168750100_168750300
ES_00033321	chr2	+	200	1	Intergenic	novelGene_2452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCTCTTCTGACCTCTA	NA	False	NA	NA	False	NA	NA	NA	170041416	170041616	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_170041400_170041600
ES_00033322	chr2	+	251	1	Intergenic	novelGene_2453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATTGAGACTACACCATT	NA	False	NA	NA	False	AAGAAA	-43	NA	170044846	170045097	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_170044800_170045100
ES_00033323	chr2	+	333	1	Intergenic	novelGene_2459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAAAAACACCATATGA	NA	False	NA	NA	False	NA	NA	NA	172493577	172493910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_172493600_172493900
ES_00033327	chr2	+	2476	1	Intergenic	novelGene_2461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGTTTGGTTTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	174803631	174806107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_174803600_174806100
ES_00033328	chr2	+	208	1	Intergenic	novelGene_2464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGTTCTAAGCTTGC	NA	False	NA	NA	False	NA	NA	NA	174978722	174978930	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_174978700_174978900
ES_00033329	chr2	+	233	1	Intergenic	novelGene_2465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCAGCCCTTCTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	176948765	176948998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_176948800_176949000
ES_00033330	chr2	+	1821	1	Intergenic	novelGene_2467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGATTATTTTCATGATGA	NA	False	NA	NA	False	NA	NA	NA	177231471	177233292	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_177231500_177233300
ES_00033331	chr2	+	337	1	Intergenic	novelGene_2468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTATAACTCTGACTGTC	NA	False	NA	NA	False	NA	NA	NA	177253446	177253783	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_177253400_177253800
ES_00033340	chr2	+	3449	7	FSM	ENSMUSG00000050530.15	ENSMUST00000091505.11	3449	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	16.2241246981839	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAAGAGTCAGTTCTTCA	917	False	NA	NA	False	AATAAA	-21	NA	3119449	3228289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3119690_3179272_3179501_3187459_3187553_3198313_3198473_3203581_3203759_3221289_3221407_3225854
ES_00033341	chr2	+	2162	12	FSM	ENSMUSG00000026643.17	ENSMUST00000102989.10	2162	12	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_2	78.3416969921083	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGCTGACTGATGAGA	1032	False	NA	NA	False	NA	NA	NA	3285293	3327753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_3285444_3305848_3305985_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ES_00033342	chr2	+	5710	13	NNC	ENSMUSG00000026657.18	novel	4355	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	16.8924292707315	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCAGTTGCCTCTTGGA	4458	False	NA	NA	False	ATTAAA	-19	NA	4564591	4618852	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_4564948_4565024_4565102_4570862_4571002_4577108_4577251_4591171_4591306_4595430_4595554_4599349_4599579_4602148_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
ES_00033343	chr2	+	4950	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	265	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATGTCTCTGTTTACT	4357	False	NA	NA	False	AATAAA	-17	NA	4886639	4915368	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ES_00033346	chr2	+	1082	2	FSM	ENSMUSG00000026664.8	ENSMUST00000128738.2	365	2	-315	-402	-315	15	multi-exon	FALSE	canonical	3	452	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTTTTTAAGATTTA	5931	False	NA	24	True	AATAAA	-35	NA	4941978	4943556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4942622_4943117
ES_00033347	chr2	+	624	2	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGCTGCTTTCAATTA	NA	False	NA	NA	False	NA	NA	NA	4973144	5016635	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_4973196_5016062
ES_00033348	chr2	+	1449	10	NIC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	322.548340716187	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1936	False	NA	NA	False	NA	NA	NA	5850063	5873551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_5850197_5852918_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ES_00033350	chr2	+	1412	11	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-2	6	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_2	256.400955536441	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTGGGGGTTTTTTTGT	1971	False	NA	NA	False	NA	NA	NA	5850098	5873553	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871053_5871164_5871219_5872899
ES_00033351	chr2	+	1402	11	NIC	ENSMUSG00000025817.13	novel	743	8	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	277.570189321548	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	94	False	NA	NA	False	NA	NA	NA	5852945	5873551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_5853002_5858323_5858428_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871053_5871164_5871219_5872899
ES_00033352	chr2	+	1046	1	FSM	ENSMUSG00000103570.2	ENSMUST00000194765.2	1682	1	135	501	135	-501	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGAAATAGTGGCCACT	NA	False	NA	NA	False	ATTAAA	-19	NA	10052783	10053829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_10052800_10053800
ES_00033353	chr2	+	1516	4	FSM	ENSMUSG00000037262.8	ENSMUST00000142599.2	600	4	-30	-886	-30	-101	multi-exon	FALSE	canonical	3	38	junction_2	6.16441400296898	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATTTTATCTTTGTTCC	4764	False	NA	NA	False	AATAAA	-28	NA	10085373	10097516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_10085556_10090540_10090636_10094923_10095175_10096528
ES_00033355	chr2	+	3611	6	NIC	ENSMUSG00000047909.12	novel	1485	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	29	junction_2	16.4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTATTCAAGCTCTAA	4800	False	NA	11	True	AATAAA	-13	NA	11783333	11795114	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_11783714_11784487_11784635_11786287_11788561_11789101_11789264_11791034_11791114_11794544
ES_00033357	chr2	+	1021	5	FSM	ENSMUSG00000047909.12	ENSMUST00000145547.8	1001	5	-20	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	31.851216617266	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCAAGGCCGTTCATAT	9566	False	NA	NA	False	NA	NA	NA	11788099	11794725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_11788561_11789101_11789264_11789933_11790072_11791034_11791114_11794544
ES_00033360	chr2	+	3592	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	-23	2	0	-2	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGAGTCTAAATGTATT	4740	False	NA	NA	False	AATAAA	-15	NA	12928879	13008264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
ES_00033361	chr2	+	3221	1	FSM	ENSMUSG00000086358.3	ENSMUST00000193685.2	2782	1	4	-443	4	443	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAACCCTGGTTGTGCTT	4812	False	NA	NA	False	NA	NA	NA	13276416	13279637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_13276400_13279600
ES_00033362	chr2	+	630	5	FSM	ENSMUSG00000026718.18	ENSMUST00000156901.2	616	5	-14	0	-4	0	multi-exon	FALSE	canonical	1	3	junction_1	102.651108128456	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAGAAGATTTAGCCA	4678	False	NA	NA	False	NA	NA	NA	14078904	14133424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_14079148_14120627_14120704_14120788_14120885_14122199_14122347_14133356
ES_00033364	chr2	+	1901	1	FSM	ENSMUSG00000103901.2	ENSMUST00000194683.2	3478	1	1110	467	1110	-467	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGATAAAGAATATACTT	NA	False	NA	NA	False	NA	NA	NA	14155740	14157641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_14155700_14157600
ES_00033366	chr2	+	4888	20	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-75	0	combination_of_known_splicesites	FALSE	canonical	1	9	junction_3	80.9270387174019	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	4567	False	NA	11	True	AATAAA	-15	NA	18069371	18217198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069676_18069845_18070006_18075935_18076016_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00033368	chr2	+	4264	18	NNC	ENSMUSG00000026743.17	novel	509	4	NA	NA	9476	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	93.8264613224364	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	NA	False	NA	11	True	AATAAA	-15	NA	18140442	18217198	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_18140482_18142706_18142780_18144078_18144148_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00033371	chr2	+	5597	18	NNC	ENSMUSG00000036617.18	novel	5931	19	NA	NA	-160	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_13	52.6070501939028	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4636	False	NA	22	True	AATAAA	-14	NA	20524441	20815335	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802690_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
ES_00033372	chr2	+	5284	13	FSM	ENSMUSG00000036617.18	ENSMUST00000114606.8	5284	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	63.672938172787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTACCTTGTC	4789	False	NA	11	True	AATAAA	-18	NA	20742124	20815165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_20742367_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712
ES_00033373	chr2	+	6575	16	FSM	ENSMUSG00000036617.18	ENSMUST00000114608.3	6635	16	0	60	0	-60	multi-exon	FALSE	canonical	3	8	junction_1	61.1139554893607	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTGTTTTTAGTTTC	4789	False	NA	NA	False	NA	NA	NA	20742124	20815464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_20742367_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812185_20812712_20812836_20813520
ES_00033374	chr2	+	2386	2	FSM	ENSMUSG00000036617.18	ENSMUST00000156587.2	2386	2	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	NA	False	NA	22	True	AATAAA	-14	NA	20812264	20815335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_20812836_20813520
ES_00033376	chr2	+	1658	11	NNC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-26	-3	intron_retention	FALSE	canonical	3	31	junction_7	75.4903967402477	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTTAAAATTCAAGTGGTT	5582	False	NA	5	True	AATAAA	-7	NA	22785507	22830264	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805541_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ES_00033379	chr2	+	3694	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114526.9	3725	13	28	3	24	0	multi-exon	FALSE	canonical	3	40	junction_1	24.981103969912	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAACTGTATTGACT	NA	False	NA	NA	False	AATAAA	-17	NA	22959107	23004522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
ES_00033380	chr2	+	425	1	FSM	ENSMUSG00000026781.18	ENSMUST00000227489.2	3359	1	928	2006	7	-898	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTACTTCTTCATTGCTT	NA	False	NA	NA	False	AATAGA	-40	NA	22989008	22989433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_22989000_22989400
ES_00033381	chr2	+	2716	7	FSM	ENSMUSG00000026775.10	ENSMUST00000125004.8	2769	7	0	53	0	-53	multi-exon	FALSE	canonical	3	665	junction_5	58.3430944214195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGTTACAGGACAGTCA	7222	False	NA	NA	False	NA	NA	NA	23046529	23067027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180
ES_00033383	chr2	+	1542	1	FSM	ENSMUSG00000102704.2	ENSMUST00000192063.2	1518	1	96	-120	96	120	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGATTGTCAACCTGTGA	NA	False	NA	NA	False	NA	NA	NA	23383038	23384580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_23383000_23384600
ES_00033385	chr2	+	4181	17	FSM	ENSMUSG00000026979.17	ENSMUST00000166388.2	4181	17	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	5.49857936198069	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCCCTTGCACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	24276628	24298212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24276722_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ES_00033387	chr2	+	927	6	FSM	ENSMUSG00000026974.12	ENSMUST00000148042.3	1103	6	176	0	176	0	multi-exon	FALSE	canonical	1	5	junction_1	356.686641185229	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTAGGACCTTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	24840397	24849278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24840487_24841484_24841545_24842597_24842705_24843247_24843389_24848047_24848229_24848929
ES_00033388	chr2	+	812	7	FSM	ENSMUSG00000036833.17	ENSMUST00000152777.2	812	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	11.3578166916005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCCGCTGTCTCGTCCAC	NA	False	NA	NA	False	AAAACA	-10	NA	24866100	24885322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24866326_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289
ES_00033389	chr2	+	2341	2	NNC	ENSMUSG00000044628.6	novel	1137	2	NA	NA	-1266	0	intron_retention	FALSE	canonical	3	42	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTTGTTCACTGATTGA	NA	False	NA	16	True	ATTAAA	-17	NA	25131674	25134273	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_25132536_25132793
ES_00033392	chr2	+	746	4	FSM	ENSMUSG00000036646.14	ENSMUST00000131826.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_1	10.3387082795139	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAAGTTCTTGATGCTGA	2701	False	NA	NA	False	NA	NA	NA	25228124	25235274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_25228280_25231618_25231729_25233235_25233422_25234979
ES_00033394	chr2	+	1119	7	FSM	ENSMUSG00000015094.17	ENSMUST00000131185.8	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	4.84481395124954	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGAAAAGAGCAGCATTG	7337	False	NA	NA	False	NA	NA	NA	25297293	25299268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
ES_00033400	chr2	+	2130	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	91.8694726228468	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390870	25395483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ES_00033401	chr2	+	942	3	FSM	ENSMUSG00000015095.13	ENSMUST00000129104.2	785	3	-157	0	-157	0	multi-exon	FALSE	canonical	3	240	junction_1	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCTGCCGAGTCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	25392412	25393596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_25393058_25393136_25393286_25393448
ES_00033404	chr2	+	3367	14	FSM	ENSMUSG00000026930.16	ENSMUST00000066936.9	3384	14	17	0	17	0	multi-exon	FALSE	canonical	1	3	junction_2	5.66521619677599	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTCTGTTGGAATT	NA	False	NA	NA	False	AATAAA	-15	NA	26205543	26238249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26205733_26212425_26212648_26213519_26213656_26213900_26214044_26214424_26214549_26214809_26214926_26215348_26215505_26216225_26216335_26217303_26217428_26229647_26229719_26230416_26230597_26234613_26234771_26235162_26235372_26236818
ES_00033406	chr2	+	479	4	FSM	ENSMUSG00000026921.21	ENSMUST00000173920.9	484	4	5	0	5	0	multi-exon	FALSE	canonical	1	2	junction_1	176.552164151751	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGGTGAGGGCAGTGTG	236	False	NA	NA	False	GGGGCT	-5	NA	26476705	26480501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26476833_26479056_26479182_26479341_26479459_26480391
ES_00033407	chr2	+	521	3	FSM	ENSMUSG00000026921.21	ENSMUST00000131112.2	521	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	129.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGCTGTTGTCAATGG	4507	False	NA	7	True	AATAAA	-7	NA	26480976	26482688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26481076_26482129_26482293_26482429
ES_00033409	chr2	+	1043	7	FSM	ENSMUSG00000062647.17	ENSMUST00000137376.8	1043	7	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	784.717234989068	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800832	26803330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26803070_26803176
ES_00033410	chr2	+	1144	6	NNC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_5	119.409547356985	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806423	26810184	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809741
ES_00033413	chr2	+	2686	6	FSM	ENSMUSG00000026833.19	ENSMUST00000100244.10	2686	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	17.749366185867	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGATTTGCTTATTGTCT	6595	False	NA	NA	False	AATAAA	-16	NA	28083104	28120748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28083475_28098089_28098240_28102543_28102700_28104620_28104841_28112562_28112670_28119065
ES_00033414	chr2	+	801	4	FSM	ENSMUSG00000026821.17	ENSMUST00000135803.8	801	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	16.9901932498329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTAGGCTTTACGTCCA	NA	False	NA	NA	False	NA	NA	NA	28403136	28432962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28403573_28430722_28430834_28432301_28432496_28432902
ES_00033417	chr2	+	723	3	FSM	ENSMUSG00000026803.18	ENSMUST00000122866.2	723	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	14.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTGCTTCACTTTGC	NA	False	NA	NA	False	NA	NA	NA	28964772	28971608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_28964821_28969400_28969491_28971023
ES_00033418	chr2	+	420	4	FSM	ENSMUSG00000039787.14	ENSMUST00000153863.2	599	4	0	179	0	-179	multi-exon	FALSE	canonical	3	20	junction_1	2.44948974278318	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCCTTCAGGGATGCCC	4048	False	NA	NA	False	NA	NA	NA	29765656	29768171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29765737_29765999_29766077_29766172_29766280_29768015
ES_00033422	chr2	+	2255	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7219	False	NA	13	True	AATAAA	-17	NA	29779822	29812551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ES_00033424	chr2	+	776	4	FSM	ENSMUSG00000019715.15	ENSMUST00000148983.2	776	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_3	65.0452833715781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGCCATCAGGAGAAGCT	NA	False	NA	NA	False	NA	NA	NA	29825534	29829507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146
ES_00033425	chr2	+	350	1	FSM	ENSMUSG00000057738.15	ENSMUST00000202286.2	1471	1	397	724	393	-724	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTTGTCTGAAGCTAT	NA	False	NA	NA	False	NA	NA	NA	29856087	29856437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29856100_29856400
ES_00033428	chr2	+	2611	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	172	0	at_least_one_novel_splicesite	FALSE	canonical	3	1331	junction_7	5379.76201582735	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29952036	29962589	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960559_29960930
ES_00033429	chr2	+	2678	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	172	4356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGAGCCAGAATCTCCCC	NA	False	NA	NA	False	NA	NA	NA	29952036	29966945	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29962582_29966911
ES_00033430	chr2	+	1788	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	172	54608	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGGGTTTCTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	29952036	30017197	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961697_30017168
ES_00033431	chr2	+	3710	13	NIC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	5.68379763499331	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTCGGTGCTGTGCTGGC	2725	False	NA	19	True	AATAAA	-18	NA	30023785	30042024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_30023925_30024808_30024883_30025420_30025565_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
ES_00033432	chr2	+	867	1	FSM	ENSMUSG00000085401.3	ENSMUST00000120862.2	969	1	104	-2	104	2	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTCAGGAGAAAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	30049513	30050380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30049500_30050400
ES_00033441	chr2	+	747	4	FSM	ENSMUSG00000026848.15	ENSMUST00000135507.8	732	4	-15	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_2	47.377913278939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGCAGGAAGAAAAAGGGAG	NA	False	NA	NA	False	NA	NA	NA	30842987	30846506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30843236_30843763_30844030_30845779_30845966_30846459
ES_00033442	chr2	+	1622	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-558	-943	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTAGCTTGTACTGTGAC	7642	False	NA	18	True	AATAAA	-18	NA	30909272	30912651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
ES_00033444	chr2	+	208	1	Intergenic	novelGene_2204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2428	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCTAGGAGTCAATTAGT	NA	False	NA	NA	False	NA	NA	NA	31421595	31421803	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_31421600_31421800
ES_00033446	chr2	+	496	3	FSM	ENSMUSG00000039356.16	ENSMUST00000192043.2	496	3	0	0	0	0	multi-exon	FALSE	canonical	3	889	junction_1	48	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAATGGAGGAGATCATGC	NA	False	NA	NA	False	NA	NA	NA	31568295	31570524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31568640_31569862_31569992_31570501
ES_00033450	chr2	+	206	2	Intergenic	novelGene_2207	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAATAAAGAAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	31914714	31916275	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_31914767_31916121
ES_00033451	chr2	+	3279	8	FSM	ENSMUSG00000001855.16	ENSMUST00000138012.2	3569	8	0	290	0	-290	multi-exon	FALSE	canonical	3	103	junction_2	26.8617017407342	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTATGCTTGGAACTTTGC	NA	False	NA	NA	False	NA	NA	NA	31923987	31943697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ES_00033452	chr2	+	647	2	FSM	ENSMUSG00000051373.6	ENSMUST00000140762.2	634	2	-13	0	-13	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCCTCCTCAGAGGCAG	NA	False	NA	NA	False	GGGGCT	-17	NA	31985563	32000138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31985693_31999620
ES_00033456	chr2	+	239	1	FSM	ENSMUSG00000119688.1	ENSMUST00000083112.3	85	1	-213	59	-213	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGACCCTCCACTGTGG	NA	False	NA	NA	False	AATAGA	-3	NA	32111768	32112007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32111800_32112000
ES_00033457	chr2	+	805	8	FSM	ENSMUSG00000039254.17	ENSMUST00000146485.8	805	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	56.5670994014531	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACATGGGGATTTTCAC	NA	False	NA	NA	False	NA	NA	NA	32127048	32133634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32127215_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630
ES_00033459	chr2	+	4237	25	NIC	ENSMUSG00000002546.18	novel	4361	26	NA	NA	-29	-1	combination_of_known_junctions	FALSE	canonical	2	9	junction_6	28.9025842270203	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTGGGCCTAGGGT	NA	False	NA	18	True	AATAAA	-11	NA	32178295	32197921	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
ES_00033461	chr2	+	217	1	Intergenic	novelGene_2210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAGA	8025	False	NA	NA	False	NA	NA	NA	32245343	32245560	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32245300_32245600
ES_00033462	chr2	+	2561	17	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	18.9868375460475	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253060	32268309	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261114_32261260_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ES_00033463	chr2	+	2472	16	NIC	ENSMUSG00000039205.17	novel	2973	18	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	23.6176958138502	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253780	32268309	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32253992_32254230_32254347_32257314_32257545_32260058_32260138_32260253_32260357_32260875_32261114_32261260_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ES_00033464	chr2	+	224	2	Intergenic	novelGene_2211	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	492	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGAGAGAGATAGGGT	NA	False	NA	NA	False	TATAAA	-10	NA	32350545	32357094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32350600_32356924
ES_00033465	chr2	+	216	1	Intergenic	novelGene_2213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTTTTTTTTATCTTA	7195	False	NA	NA	False	NA	NA	NA	32394313	32394529	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32394300_32394500
ES_00033466	chr2	+	345	1	Intergenic	novelGene_2214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTAAGAGTTGCCTTGGT	NA	False	NA	NA	False	NA	NA	NA	32435123	32435468	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32435100_32435500
ES_00033467	chr2	+	2536	7	FSM	ENSMUSG00000026811.19	ENSMUST00000095045.9	2536	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	37.4718412796714	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3354	False	NA	5	True	AATAAA	-14	NA	32497022	32510816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32497124_32498053_32498238_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ES_00033468	chr2	+	2020	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2953	2	0	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGAAGTGAGTGTATT	NA	False	NA	11	True	AATAAA	-15	NA	32518401	32525064	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ES_00033470	chr2	+	908	4	FSM	ENSMUSG00000053746.9	ENSMUST00000138214.2	908	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	3.85861230093008	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGCCACATCAGTCTGT	8270	False	NA	NA	False	NA	NA	NA	32665876	32667461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32665908_32666315_32666819_32666994_32667041_32667133
ES_00033472	chr2	+	1426	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	-9	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
ES_00033473	chr2	+	1145	2	FSM	ENSMUSG00000004105.9	ENSMUST00000139148.2	2306	2	71	1090	52	-1090	multi-exon	FALSE	canonical	2	3	junction_1	0	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTTGGGGAGTCCAG	NA	False	NA	NA	False	NA	NA	NA	33106180	33119046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_33106466_33118186
ES_00033474	chr2	+	2560	10	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	0	30162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	841.246356365818	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACCATGAATGTCCT	NA	False	NA	NA	False	AAGAAA	-45	NA	34662106	34697721	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562_34666543_34697691
ES_00033475	chr2	+	2642	9	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	0	30162	intron_retention	FALSE	non_canonical	0	0	junction_8	884.378303880754	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACCATGAATGTCCT	NA	False	NA	NA	False	AAGAAA	-45	NA	34662106	34697721	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562_34666543_34697691
ES_00033477	chr2	+	244	1	Intergenic	novelGene_2230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTTTTTTTCGAAACA	NA	False	NA	NA	False	NA	NA	NA	34691627	34691871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34691600_34691900
ES_00033479	chr2	+	1397	4	FSM	ENSMUSG00000057110.16	ENSMUST00000143807.4	1397	4	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	4.10960933531265	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGTCATCCGCAGGT	NA	False	NA	11	True	AATAAA	-14	NA	35065259	35068823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_35065385_35065549_35066335_35068050_35068123_35068408
ES_00033480	chr2	+	392	4	FSM	ENSMUSG00000026887.10	ENSMUST00000132042.2	392	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	66.001683480213	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGCCAGGGTGACCGT	NA	False	NA	NA	False	NA	NA	NA	36026645	36037931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_36026712_36031457_36031670_36037364_36037462_36037914
ES_00033481	chr2	+	465	2	FSM	ENSMUSG00000085141.2	ENSMUST00000128242.2	692	2	220	7	220	-7	multi-exon	FALSE	canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCCACGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	36101003	36102907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_36101098_36102536
ES_00033482	chr2	+	1613	11	FSM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	-19	0	-19	0	multi-exon	FALSE	canonical	3	116	junction_1	48.2323542863087	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAGAAAAAGAATAAT	1520	False	NA	NA	False	GATAAA	-3	NA	37333271	37385601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594
ES_00033483	chr2	+	3316	20	NNC	ENSMUSG00000035437.16	novel	4847	26	NA	NA	-5	3376	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_19	62.4127535088304	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGCCTTGGCTACTAA	NA	False	NA	NA	False	AATAAA	-21	NA	37342251	37438350	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37437555
ES_00033484	chr2	+	223	1	FSM	ENSMUSG00000108226.2	ENSMUST00000203307.2	376	1	11	142	11	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAAATGTCAGCTACAA	NA	False	NA	NA	False	NA	NA	NA	37549168	37549391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_37549200_37549400
ES_00033485	chr2	+	230	2	Intergenic	novelGene_2238	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTCACAAGAACAGGCTAA	NA	False	NA	NA	False	NA	NA	NA	38740399	38804436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_38740452_38804258
ES_00033486	chr2	+	1049	2	FSM	ENSMUSG00000086202.2	ENSMUST00000134308.2	424	2	-199	-426	-4	46	multi-exon	FALSE	canonical	3	37	junction_1	0	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTCTGTTGAAGATAACC	NA	False	NA	NA	False	NA	NA	NA	45586612	45588505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_45587155_45587998
ES_00033487	chr2	+	6108	11	NIC	ENSMUSG00000036792.13	novel	713	8	NA	NA	38	-502	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	3.49857113690718	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTATGGGAAAGACATTTA	6264	False	NA	NA	False	NA	NA	NA	48839572	49150068	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_48840188_48908265_48908338_48976601_48976665_48989728_48989822_49008663_49008818_49059920_49060026_49121683_49121861_49135553_49136219_49140150_49140254_49141254_49141436_49146188
ES_00033490	chr2	+	8764	35	NNC	ENSMUSG00000036202.17	novel	2789	14	NA	NA	-1305	268	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	159.213945525595	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAAATAAAGCCGGTG	NA	False	NA	NA	False	NA	NA	NA	51961538	52012663	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51961660_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00033491	chr2	+	8723	35	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-236	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	159.042074583707	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTAGTTAGTGCCTGCC	NA	False	NA	22	True	ATTAAA	-17	NA	51962607	52012393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51962958_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00033492	chr2	+	8509	36	FSM	ENSMUSG00000036202.17	ENSMUST00000112693.10	8509	36	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	157.508991644857	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTTAGTGCCTGCCTT	NA	False	NA	24	True	ATTAAA	-19	NA	51962843	52012395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968321_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00033494	chr2	+	3885	6	FSM	ENSMUSG00000036202.17	ENSMUST00000125376.8	3885	6	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	98.0864924441689	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAATGTTACATACCACT	NA	False	NA	1	True	ATTAAA	-13	NA	52001472	52012121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271
ES_00033496	chr2	+	7416	26	NIC	ENSMUSG00000035168.17	novel	7422	27	NA	NA	-100	0	combination_of_known_splicesites	TRUE	canonical	3	14	junction_1	32.7975608849195	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGTTGGCATTCATTG	NA	False	NA	11	True	AATAAA	-13	NA	59442285	59676059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_59442541_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
ES_00033497	chr2	+	203	1	Intergenic	novelGene_2258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAACTATTAAAAATT	1179	False	NA	NA	False	NA	NA	NA	59777255	59777458	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_59777300_59777500
ES_00033501	chr2	+	648	3	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	110	-4	intron_retention	FALSE	canonical	3	22	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGTGGTGGTATACCC	9456	False	NA	NA	False	NA	NA	NA	60241978	60242919	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_60242353_60242508_60242576_60242712
ES_00033502	chr2	+	832	2	FSM	ENSMUSG00000064289.16	ENSMUST00000154693.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCTTGCTCCTGCCACA	NA	False	NA	NA	False	NA	NA	NA	61474174	61480321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_61474767_61480081
ES_00033503	chr2	+	722	7	FSM	ENSMUSG00000026914.16	ENSMUST00000146051.8	704	7	-18	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	742.160753026818	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGATATCAACACTCAGC	8595	False	NA	NA	False	NA	NA	NA	61542085	61595252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_61542218_61550787_61550916_61553053_61553193_61590979_61591052_61591318_61591439_61594180_61594252_61595192
ES_00033504	chr2	+	10592	7	FSM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	80	0	2	0	multi-exon	FALSE	canonical	1	2	junction_1	4.6696419087073	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTATTGCGTTTTTATT	5683	False	NA	11	True	AGTAAA	-19	NA	65676190	65861890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_65676229_65690874_65691037_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
ES_00033505	chr2	+	681	1	FSM	ENSMUSG00000082218.2	ENSMUST00000122405.2	493	1	6	-194	6	194	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAAGCATTTTTTTAAGG	NA	False	NA	NA	False	NA	NA	NA	66772907	66773588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_66772900_66773600
ES_00033506	chr2	+	263	1	FSM	ENSMUSG00000082836.2	ENSMUST00000119276.2	390	1	-60	187	-60	-187	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGGGAGGCTCGGGCCA	NA	False	NA	NA	False	NA	NA	NA	68661300	68661563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_68661300_68661600
ES_00033508	chr2	+	1806	9	NNC	ENSMUSG00000027035.11	novel	7038	10	NA	NA	-8	14383	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	20.2727495668447	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTTATGTGCATTATT	NA	False	NA	NA	False	AATGAA	-14	NA	68691805	68916268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68915481
ES_00033509	chr2	+	6927	11	NNC	ENSMUSG00000027035.11	novel	1279	11	NA	NA	2	4	at_least_one_novel_splicesite	TRUE	canonical	3	48	junction_8	6.39140047250992	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGTCCTTTATTGTAA	NA	False	NA	9	True	AATAAA	-22	NA	68691795	68944630	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943469_68943572
ES_00033511	chr2	+	866	1	FSM	ENSMUSG00000103546.2	ENSMUST00000194110.2	866	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAGAGAAAAGAGAGGA	NA	False	NA	NA	False	NA	NA	NA	68843955	68844821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_68844000_68844800
ES_00033512	chr2	+	200	2	Intergenic	novelGene_2265	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	10	junction_1	0	690	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTGTGAGGATCAGTT	NA	False	NA	NA	False	NA	NA	NA	69435724	69468786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69435776_69468637
ES_00033516	chr2	+	492	1	FSM	ENSMUSG00000083007.2	ENSMUST00000118359.2	625	1	56	77	56	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGCCCGACTCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	69596581	69597073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69596600_69597100
ES_00033517	chr2	+	3815	4	NIC	ENSMUSG00000042155.4	novel	653	2	NA	NA	61	-584	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	2.94392028877595	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAATCTGTAACTTTAA	5107	False	NA	NA	False	AATAAA	-10	NA	69652348	69666411	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_69652404_69654130_69655345_69659189_69659343_69664018
ES_00033518	chr2	+	1368	12	NIC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	18	-336	combination_of_known_junctions	FALSE	canonical	3	167	junction_10	472.143538196974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAAGAAAAGAGAAAATGG	NA	False	NA	8	True	NA	NA	NA	69691923	69701518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701024_69701178_69701465
ES_00033519	chr2	+	497	4	FSM	ENSMUSG00000044308.18	ENSMUST00000150301.2	559	4	62	0	62	0	multi-exon	FALSE	canonical	3	136	junction_1	5.31245915016974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATAATTTGGCCTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	69839412	69846809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69839551_69843433_69843559_69846475_69846584_69846683
ES_00033520	chr2	+	1418	2	FSM	ENSMUSG00000044308.18	ENSMUST00000123890.2	1418	2	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTTAATTCATTCTC	NA	False	NA	67	True	NA	NA	NA	69850855	69852564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69851596_69851886
ES_00033521	chr2	+	682	2	Genic_Genomic	ENSMUSG00000047965.10	novel	579	1	NA	NA	0	129	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAATGGAATGT	NA	False	NA	NA	False	NA	NA	NA	70289325	70290033	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_70289913_70289938
ES_00033522	chr2	+	1844	3	FSM	ENSMUSG00000014959.13	ENSMUST00000136485.2	1844	3	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_2	79.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCCTTGTGTTCTAAGT	8660	False	NA	16	True	AATAAA	-16	NA	70518156	70522065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_70518817_70519526_70519647_70521001
ES_00033524	chr2	+	2846	17	FSM	ENSMUSG00000027012.16	ENSMUST00000100028.10	2097	17	-317	-432	-39	0	multi-exon	FALSE	canonical	1	5	junction_4	189.242197659507	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042010	71093635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ES_00033525	chr2	+	2585	17	FSM	ENSMUSG00000027012.16	ENSMUST00000112142.8	2585	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	197.040565303188	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTTCACTTTTACTT	NA	False	NA	19	True	AATAAA	-21	NA	71042049	71093642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ES_00033527	chr2	+	474	1	FSM	ENSMUSG00000082190.2	ENSMUST00000117993.2	473	1	32	-33	32	33	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGGAAAAAAAATTATTACT	NA	False	NA	NA	False	AATAAA	-11	NA	71150158	71150632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71150200_71150600
ES_00033531	chr2	+	2637	5	FSM	ENSMUSG00000055612.16	ENSMUST00000157019.2	614	5	-130	-1893	-36	-353	multi-exon	FALSE	canonical	3	23	junction_2	617.84357850511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATTCTGACACTGAGCA	8533	False	NA	NA	False	NA	NA	NA	72306466	72314734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72306656_72309249_72309373_72309957_72310063_72312034_72312293_72312772
ES_00033534	chr2	+	1926	1	FSM	ENSMUSG00000082455.4	ENSMUST00000120830.2	528	1	-1365	-33	-1365	33	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	72945726	72947652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72945700_72947700
ES_00033535	chr2	+	469	1	FSM	ENSMUSG00000083569.2	ENSMUST00000120032.2	799	1	118	212	118	-212	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACATGCACCACTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	72962206	72962675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72962200_72962700
ES_00033536	chr2	+	436	2	FSM	ENSMUSG00000008226.15	ENSMUST00000155019.8	425	2	-13	2	-8	-2	multi-exon	FALSE	canonical	3	91	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCCTGGTCCTCTATAA	NA	False	NA	NA	False	NA	NA	NA	73142989	73146143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_73143058_73145775
ES_00033537	chr2	+	2109	2	FSM	ENSMUSG00000043342.10	ENSMUST00000059272.10	2136	2	0	27	0	-27	multi-exon	FALSE	canonical	2	6	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAGCCCAGCCGCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	74528070	74530525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_74529178_74529523
ES_00033538	chr2	+	1839	2	FSM	ENSMUSG00000042448.6	ENSMUST00000047793.6	1862	2	23	0	23	0	multi-exon	FALSE	canonical	2	3	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTCTCTGCCTTTTCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	74593346	74595486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_74594098_74594398
ES_00033539	chr2	+	1883	4	FSM	ENSMUSG00000086813.2	ENSMUST00000135682.2	1939	4	0	56	0	-56	multi-exon	FALSE	canonical	0	0	junction_3	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTGTGCCTCTGCTC	NA	False	NA	NA	False	AGTAAA	-16	NA	75607531	75612594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_75607585_75607994_75608131_75609271_75609426_75611054
ES_00033540	chr2	+	635	1	FSM	ENSMUSG00000081833.2	ENSMUST00000122366.2	457	1	-103	-75	-103	75	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGCCTTTCCTCCAAGCT	3982	False	NA	NA	False	NA	NA	NA	75638598	75639233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_75638600_75639200
ES_00033546	chr2	+	3157	2	Fusion	ENSMUSG00000095824.2_ENSMUSG00000079247.3	novel	732	2	NA	NA	-88	576	multi-exon	TRUE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAAGCTAATTTTCATT	2148	False	NA	NA	False	AATAAA	-17	NA	83814998	83823965	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_83816002_83821811
ES_00033547	chr2	+	225	2	Intergenic	novelGene_2293	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGAGCCATCTCACCAG	NA	False	NA	NA	False	NA	NA	NA	84612194	84664011	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_84612219_84663810
ES_00033548	chr2	+	1905	2	FSM	ENSMUSG00000027078.15	ENSMUST00000159150.2	525	2	-18	-1362	-18	261	multi-exon	FALSE	canonical	3	170	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGTGTTTCATCAGAAA	NA	False	NA	NA	False	NA	NA	NA	84636554	84640940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84636868_84639348
ES_00033549	chr2	+	2823	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-66	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	394.966251525051	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867511	84877453	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_84867673_84868119_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ES_00033552	chr2	+	402	3	FSM	ENSMUSG00000025838.13	ENSMUST00000138504.8	427	3	25	0	7	0	multi-exon	FALSE	canonical	2	2	junction_2	1	532	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGGAGCATACAGACTG	NA	False	NA	NA	False	NA	NA	NA	87336933	87339572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_87336974_87338774_87339089_87339524
ES_00033554	chr2	+	809	2	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-9068	381	multi-exon	FALSE	canonical	1	2	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTAAGGAGTCTACCTG	NA	False	NA	NA	False	AATAAA	-43	NA	87347420	87357122	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_87347447_87356339
ES_00033555	chr2	+	853	1	FSM	ENSMUSG00000082908.5	ENSMUST00000119272.2	253	1	-219	-381	-219	381	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTAAGGAGTCTACCTG	NA	False	NA	NA	False	AATAAA	-43	NA	87356269	87357122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_87356300_87357100
ES_00033556	chr2	+	522	2	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	7	359	multi-exon	FALSE	canonical	3	135	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	87356495	87357100	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_87356560_87356642
ES_00033557	chr2	+	8584	36	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	2177	3540	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_14	111.179722127036	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACATGCAAAGTCAAAT	NA	False	NA	NA	False	AATAAA	-30	NA	90509735	90570212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532730_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
ES_00033561	chr2	+	6231	14	NIC	ENSMUSG00000005506.17	novel	7614	14	NA	NA	19	-1445	combination_of_known_junctions	FALSE	canonical	3	151	junction_13	200.669205852604	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTTTAAATTGGGTGAA	2397	False	NA	NA	False	AATAGA	-21	NA	90770821	90848390	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ES_00033564	chr2	+	3145	10	FSM	ENSMUSG00000002103.17	ENSMUST00000124131.2	3124	10	-21	0	-6	0	multi-exon	FALSE	canonical	3	45	junction_6	11.063230167017	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCACTGTCTCCAAGATA	5051	False	NA	10	True	AATAAA	-24	NA	91033247	91042487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
ES_00033567	chr2	+	285	1	FSM	ENSMUSG00000077221.3	ENSMUST00000104033.3	111	1	7	-181	7	181	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCTGGAAGAGCTAGGT	NA	False	NA	NA	False	NA	NA	NA	91426421	91426706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91426400_91426700
ES_00033570	chr2	+	372	2	FSM	ENSMUSG00000027243.9	ENSMUST00000128140.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATATACTTCTTAGTGGA	3372	False	NA	NA	False	NA	NA	NA	91541196	91542672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91541321_91542424
ES_00033573	chr2	+	280	1	Intergenic	novelGene_2304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2026	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCAACTTTTTTTTTTT	1448	False	NA	NA	False	NA	NA	NA	91582604	91582884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_91582600_91582900
ES_00033575	chr2	+	7160	19	FSM	ENSMUSG00000058318.16	ENSMUST00000111293.9	3900	19	-429	-2831	-360	0	multi-exon	FALSE	canonical	2	5	junction_7	5.58022301426107	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCCTCTTGGTGTTGCGT	NA	False	NA	3	True	AATAAA	-16	NA	92014090	92195011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_92014698_92044393_92044435_92045808_92045921_92051816_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ES_00033576	chr2	+	6310	16	FSM	ENSMUSG00000058318.16	ENSMUST00000090586.12	6310	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	5.0622788017519	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCCTCTTGGTGTTGCGT	NA	False	NA	3	True	AATAAA	-16	NA	92051906	92195011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ES_00033579	chr2	+	2690	9	NNC	ENSMUSG00000068735.15	novel	2654	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	120.663530115773	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAATCTGCGTGGTGT	NA	False	NA	10	True	AAGAAA	-43	NA	93018014	93032094	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_93018093_93027241_93027324_93027806_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130_93030661_93030688
ES_00033580	chr2	+	2551	9	NNC	ENSMUSG00000068735.15	novel	2703	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	118.3717000596	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGTGGTGTCCTGTTTT	NA	False	NA	18	True	NA	NA	NA	93018014	93032102	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_93018093_93027241_93027324_93027953_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130_93030661_93030688
ES_00033581	chr2	+	527	2	FSM	ENSMUSG00000027164.9	ENSMUST00000143341.2	1949	2	-17	1439	-17	-1439	multi-exon	FALSE	canonical	3	43	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTGATTTTGAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	101508756	101515141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_101508966_101514823
ES_00033582	chr2	+	514	1	FSM	ENSMUSG00000082328.2	ENSMUST00000119411.2	463	1	77	-128	77	128	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTACCAGTAA	NA	False	NA	NA	False	AATAAA	-23	NA	102004711	102005225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_102004700_102005200
ES_00033583	chr2	+	857	6	FSM	ENSMUSG00000010911.13	ENSMUST00000124540.8	837	6	-20	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	142.218704817615	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4593	False	NA	12	True	AATAAA	-34	NA	102904019	102922976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_102904187_102913299_102913401_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ES_00033585	chr2	+	555	5	FSM	ENSMUSG00000068686.13	ENSMUST00000111131.9	555	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	30.2933573576783	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103900193	103921505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103920473_103920620_103921348
ES_00033586	chr2	+	1709	5	NNC	ENSMUSG00000032679.13	novel	1806	5	NA	NA	1233	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	98.119824704287	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103927417	103945699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_103927443_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ES_00033588	chr2	+	800	1	FSM	ENSMUSG00000081721.4	ENSMUST00000120886.2	1002	1	393	-191	393	191	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTCTGAATTCTCACTC	8951	False	NA	NA	False	AATAAA	-25	NA	104122311	104123111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104122300_104123100
ES_00033589	chr2	+	1222	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	0	-7090	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	14	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTGCAGGAATAGAAACC	NA	False	NA	NA	False	NA	NA	NA	104389507	104391305	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104389595_104390068_104390321_104390422
ES_00033590	chr2	+	1149	3	NIC	ENSMUSG00000086454.8	novel	536	3	NA	NA	0	111	intron_retention	FALSE	canonical	3	23	junction_2	277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTTTGCTGTGTTAAT	NA	False	NA	23	True	AAGAAA	-19	NA	104389536	104399288	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_104390321_104398205_104398278_104398995
ES_00033591	chr2	+	1221	1	FSM	ENSMUSG00000083856.2	ENSMUST00000117876.2	1183	1	74	-112	74	112	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATTGGTTTGTTC	NA	False	NA	NA	False	ACTAAA	-1	NA	104650597	104651818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104650600_104651800
ES_00033592	chr2	+	3100	16	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	39	-589	combination_of_known_splicesites	FALSE	canonical	2	12	junction_13	13.435276947896	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAGAAGAGATGCTGGA	NA	False	NA	NA	False	NA	NA	NA	104716707	104829493	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
ES_00033593	chr2	+	2082	4	FSM	ENSMUSG00000055312.3	ENSMUST00000068813.3	1556	4	26	-552	4	552	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTCTTCATGCTG	NA	False	NA	NA	False	NA	NA	NA	105054690	105210693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_105054726_105114945_105115031_105128070_105128314_105208974
ES_00033594	chr2	+	2190	11	FSM	ENSMUSG00000027115.15	ENSMUST00000151395.8	2176	11	-14	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.6349416500198	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTAACGCCTCAGGATTT	1464	False	NA	NA	False	NA	NA	NA	109111170	109137846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194
ES_00033595	chr2	+	3325	17	NNC	ENSMUSG00000027115.15	novel	3369	17	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_16	78.8546923144083	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	1416	False	NA	25	True	ATTAAA	-16	NA	109111122	109172092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169018_109171502
ES_00033596	chr2	+	3519	18	NNC	ENSMUSG00000027115.15	novel	3369	17	NA	NA	0	111	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_13	131.727909778197	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGACCAAATTTGTAAACAA	1490	False	NA	NA	False	NA	NA	NA	109111196	109172203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109156886_109157044_109163600_109164013_109164665_109164774_109168911_109169018_109171502
ES_00033597	chr2	+	2240	8	FSM	ENSMUSG00000027160.17	ENSMUST00000127630.8	2240	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	236.291846526057	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCATTTTTTTTAGAAGT	NA	False	NA	NA	False	AATAAA	-22	NA	109848324	109875667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109867749_109867880_109868424_109868622_109870918_109871078_109871605_109871748_109874531
ES_00033598	chr2	+	1202	1	FSM	ENSMUSG00000081037.4	ENSMUST00000117553.2	1125	1	-77	0	-77	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAGGAGCGCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	111830447	111831649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_111830400_111831600
ES_00033599	chr2	+	214	1	Intergenic	novelGene_2333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCATAAGGTCCACTTAG	NA	False	NA	NA	False	NA	NA	NA	112066798	112067012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_112066800_112067000
ES_00033601	chr2	+	1749	4	FSM	ENSMUSG00000027132.4	ENSMUST00000151257.2	1734	4	-15	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	36.4264860903284	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	112209555	112237863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418
ES_00033602	chr2	+	1574	7	NNC	ENSMUSG00000003604.15	novel	4735	6	NA	NA	-757	342	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	221.124964669302	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTTTCCTTTCTTCAC	NA	False	NA	4	True	AATAAA	-15	NA	112322551	112461598	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_112322614_112323211_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
ES_00033603	chr2	+	1364	2	NNC	ENSMUSG00000040282.14	novel	2770	11	NA	NA	170361	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACCCTTCTACCTGGA	834	False	NA	7	True	AATAAA	-17	NA	115582642	115609249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_115582695_115607937
ES_00033604	chr2	+	741	3	FSM	ENSMUSG00000085316.2	ENSMUST00000126467.2	1710	3	12	957	-11	-794	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGCCCTGTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	116730644	116742315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_116730813_116741201_116741318_116741858
ES_00033606	chr2	+	391	4	FSM	ENSMUSG00000040084.10	ENSMUST00000127356.2	385	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	497	junction_3	52.6898683071254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCTTTGGATATGTAC	NA	False	NA	NA	False	NA	NA	NA	118430592	118440276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118430766_118435894_118435955_118437024_118437170_118440263
ES_00033609	chr2	+	4663	7	NNC	ENSMUSG00000040007.9	novel	4594	7	NA	NA	-78	0	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_5	12.1609575646365	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTTTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-32	NA	118731855	118755009	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_118732239_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752085_118752178_118752863
ES_00033611	chr2	+	5516	8	FSM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	-3	14	0	-14	multi-exon	FALSE	canonical	3	41	junction_1	11.0822527732683	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAGATACCAAATATTAT	7239	False	NA	NA	False	ATTAAA	-4	NA	118877627	118903386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ES_00033613	chr2	+	3067	1	FSM	ENSMUSG00000055926.4	ENSMUST00000239130.2	3067	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGGTCTTGGATGTGAA	7944	False	NA	NA	False	AATAAA	-24	NA	119004989	119008056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119005000_119008100
ES_00033614	chr2	+	383	3	FSM	ENSMUSG00000068580.12	ENSMUST00000123323.2	848	3	375	90	375	-90	multi-exon	FALSE	canonical	3	116	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCAAGGCCTCACTCAG	6108	False	NA	NA	False	NA	NA	NA	119045311	119046788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119045522_119045934_119046009_119046689
ES_00033617	chr2	+	202	2	Antisense	novelGene_ENSMUSG00000072980.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGCATCCAATGTACACA	NA	False	NA	NA	False	NA	NA	NA	119413491	119440409	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_119413540_119440255
ES_00033618	chr2	+	3718	20	NNC	ENSMUSG00000027298.18	novel	3529	8	NA	NA	13	35132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	80.2970592769863	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAATGCCAGACCCAGGCT	NA	False	NA	NA	False	NA	NA	NA	119629820	119683717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_119629897_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124_119648579_119683687
ES_00033620	chr2	+	7205	17	NNC	ENSMUSG00000033943.16	novel	864	4	NA	NA	-24685	1235	intron_retention	FALSE	canonical	3	29	junction_1	45.2518991314177	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTGTGTCTTACTCAT	7967	False	NA	NA	False	ATTAAA	-19	NA	119703023	119778918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_119703073_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859_119757203_119762191_119762416_119762984_119763168_119763553_119763624_119765629_119766148_119769119_119769268_119771702_119772327_119776652_119776944_119777305
ES_00033623	chr2	+	384	5	FSM	ENSMUSG00000098488.8	ENSMUST00000136042.2	761	5	377	0	377	0	multi-exon	FALSE	canonical	2	8	junction_3	3.64005494464026	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGACAGGAGATCCAAAG	NA	False	NA	NA	False	NA	NA	NA	119865400	119866610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119865538_119865676_119865806_119866065_119866107_119866285_119866329_119866576
ES_00033625	chr2	+	664	5	FSM	ENSMUSG00000062646.13	ENSMUST00000145134.2	664	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.29903810567666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTGGGATCATTGACGT	NA	False	NA	NA	False	NA	NA	NA	120253981	120261496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120254226_120258210_120258278_120259281_120259379_120261035_120261217_120261421
ES_00033626	chr2	+	936	5	FSM	ENSMUSG00000062646.13	ENSMUST00000127367.2	950	5	14	0	14	0	multi-exon	FALSE	canonical	3	6	junction_4	1.11803398874989	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTTGTGTAGCAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	120283073	120290826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120283149_120286473_120286588_120287688_120287802_120288523_120288628_120290296
ES_00033629	chr2	+	498	2	FSM	ENSMUSG00000023572.17	ENSMUST00000135036.2	550	2	52	0	52	0	multi-exon	FALSE	canonical	3	174	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGTAGGAGTAAACTATT	NA	False	NA	NA	False	NA	NA	NA	120841587	120842237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120842012_120842163
ES_00033631	chr2	+	11764	7	FSM	ENSMUSG00000027254.14	ENSMUST00000094639.10	11825	7	61	0	61	0	multi-exon	FALSE	canonical	0	0	junction_5	3.5939764421413	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGATCTCTGCTAATTGT	NA	False	NA	NA	False	NA	NA	NA	121120141	121141313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121120354_121121200_121121303_121129077_121129161_121129386_121129528_121129749_121137854_121137995_121138217_121138412
ES_00033632	chr2	+	851	6	FSM	ENSMUSG00000000308.15	ENSMUST00000150271.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	76.7609275608366	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGGAGCCAACACACTTT	932	False	NA	NA	False	NA	NA	NA	121188387	121191469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121188430_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383
ES_00033634	chr2	+	1954	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	3	-707	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1569.5347771447	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244366	121268461	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257186_121259935_121260064_121262130_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ES_00033635	chr2	+	2658	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1169.66059595176	127	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATCTTGTCCATAATT	NA	False	NA	NA	False	ATTAAA	-26	NA	121244366	121269168	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262133_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ES_00033636	chr2	+	2643	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	canonical	1	96	junction_4	1143.67711971809	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGAATCTTGTCCATAAT	NA	False	NA	NA	False	ATTAAA	-25	NA	121244377	121269167	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257180_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ES_00033637	chr2	+	3225	6	Fusion	ENSMUSG00000027242.15_ENSMUSG00000084407.2	novel	455	4	NA	NA	3349	4	multi-exon	FALSE	canonical	3	29	junction_1	8.87693640846886	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTTGAGTAATCTTTATA	NA	False	NA	NA	False	AATAAA	-26	NA	121319261	121375345	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_121319345_121321837_121321994_121364588_121364804_121365904_121366058_121367587_121367642_121372781
ES_00033640	chr2	+	3606	8	NIC	ENSMUSG00000060227.16	novel	4032	9	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_5	77.1843803591671	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATCACTTTCTGGGTT	NA	False	NA	-36	True	TTTAAA	-2	NA	121697453	121766344	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121741279_121741379_121742351_121742523_121763958
ES_00033641	chr2	+	2715	11	NNC	ENSMUSG00000060227.16	novel	4215	10	NA	NA	3	4929	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	68.2422156732913	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGTAAAATAAAGATAGATT	NA	False	NA	NA	False	NA	NA	NA	121697453	121771630	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958_121765019_121771444
ES_00033643	chr2	+	895	5	NNC	ENSMUSG00000060802.9	novel	860	4	NA	NA	0	57056	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	80.6892186106669	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAGTTAAAATAGCAATC	NA	False	NA	NA	False	NA	NA	NA	121978166	122040620	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131_121983570_122040590
ES_00033645	chr2	+	443	2	Genic_Genomic	ENSMUSG00000098024.2	novel	497	2	NA	NA	-285	-147	multi-exon	FALSE	canonical	3	6	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTCAGGCTGCCATATG	NA	False	NA	NA	False	NA	NA	NA	126517550	126525578	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_126517737_126525321
ES_00033647	chr2	+	202	2	Intergenic	novelGene_2360	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATCTTTTTGATATATGT	NA	False	NA	NA	False	NA	NA	NA	126777974	126844276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_126778001_126844100
ES_00033650	chr2	+	733	3	FSM	ENSMUSG00000003660.11	ENSMUST00000131435.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	796	junction_2	11.5	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGCCAAGGTGAGTGTA	1089	False	NA	NA	False	NA	NA	NA	127080011	127081880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127080581_127080658_127080741_127081798
ES_00033652	chr2	+	2656	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.983674953575	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4969	False	NA	14	True	AATAAA	-25	NA	127267086	127278012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_127267142_127269161_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274894_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ES_00033653	chr2	+	2670	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-40	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	63.4496247056154	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4961	False	NA	14	True	AATAAA	-25	NA	127267078	127278012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_127267142_127269161_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273199_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ES_00033654	chr2	+	2616	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	48.8950470250594	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_127267142_127269172_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ES_00033656	chr2	+	531	6	FSM	ENSMUSG00000027380.11	ENSMUST00000126410.2	531	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	0.489897948556636	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATGGGAACTACGCTGC	NA	False	NA	NA	False	NA	NA	NA	127680795	127719720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127680903_127691112_127691210_127709202_127709287_127713181_127713269_127714029_127714129_127719663
ES_00033657	chr2	+	674	4	FSM	ENSMUSG00000027381.17	ENSMUST00000103211.8	672	4	-2	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	12.2292908852294	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAGAGAGATGTGCTGA	NA	False	NA	NA	False	NA	NA	NA	127967957	128000362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127968173_127970539_127970677_127989004_127989115_128000150
ES_00033658	chr2	+	5010	4	NIC	ENSMUSG00000027381.17	novel	974	4	NA	NA	36	-14	intron_retention	FALSE	canonical	3	31	junction_3	2.16024689946929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACTAGCTTTCATGAACT	NA	False	NA	NA	False	AATAAA	-5	NA	127969530	128004453	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_127969733_127970539_127970935_127989004_127989115_128000150
ES_00033662	chr2	+	2322	8	FSM	ENSMUSG00000027386.10	ENSMUST00000028864.3	2905	8	13	570	13	-570	multi-exon	FALSE	canonical	0	0	junction_3	1.27775312999988	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTGTCTTCCATTCCA	1054	False	NA	NA	False	NA	NA	NA	128705864	128738380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_128706068_128719279_128719440_128722175_128722347_128731620_128731747_128734362_128734504_128735686_128735825_128736685_128736825_128737136
ES_00033663	chr2	+	234	2	Intergenic	novelGene_2364	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGACATTTAATTGGGG	7803	False	NA	NA	False	NA	NA	NA	128810192	128861513	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_128810225_128861311
ES_00033664	chr2	+	569	1	FSM	ENSMUSG00000082274.2	ENSMUST00000120625.2	1789	1	-5	1225	-5	-1225	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGAAGAAGAAGAGGAATG	NA	False	NA	NA	False	NA	NA	NA	129010614	129011183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129010600_129011200
ES_00033666	chr2	+	3153	10	FSM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	66	0	66	0	multi-exon	FALSE	canonical	3	202	junction_4	145.845428069888	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAATTTCTCTTGTGCTT	NA	False	NA	15	True	AATAAA	-17	NA	129041295	129053529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ES_00033667	chr2	+	3310	5	NIC	ENSMUSG00000027397.15	novel	3219	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	499	junction_4	37.3965239026303	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAATTTCTCTTGTGCTT	NA	False	NA	15	True	AATAAA	-17	NA	129048239	129053529	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ES_00033668	chr2	+	3672	6	FSM	ENSMUSG00000037902.19	ENSMUST00000099113.10	3342	6	-330	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	49.4424918465888	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129434784	129474140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469918_129471846
ES_00033670	chr2	+	2649	13	FSM	ENSMUSG00000027401.10	ENSMUST00000110299.3	4135	13	-22	1508	-22	-1508	multi-exon	FALSE	canonical	0	0	junction_1	2.16024689946929	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCACCAGTTCCAACCGG	NA	False	NA	NA	False	AATAAA	-21	NA	129854246	129890811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129854330_129865608_129865783_129866264_129866505_129867177_129867297_129868604_129868734_129871544_129871723_129871820_129871957_129879392_129879497_129880282_129880529_129883676_129883986_129886422_129886581_129889607_129889742_129890172
ES_00033671	chr2	+	370	1	FSM	ENSMUSG00000074804.4	ENSMUST00000121103.2	1320	1	-35	985	-35	-985	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGATTGAAATGGATGAGA	NA	False	NA	NA	False	AATATA	-20	NA	129942408	129942778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129942400_129942800
ES_00033674	chr2	+	1490	6	FSM	ENSMUSG00000027405.17	ENSMUST00000146454.9	1490	6	0	0	0	0	multi-exon	FALSE	canonical	3	433	junction_5	721.25030329283	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCAGCTCCTGCCCAT	NA	False	NA	-29	True	NA	NA	NA	130118636	130121173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
ES_00033677	chr2	+	907	10	FSM	ENSMUSG00000027411.18	ENSMUST00000130258.8	907	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	124.612287605285	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAGCAGTGCATTGAGGC	NA	False	NA	NA	False	NA	NA	NA	130266323	130282216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280751_130281539_130281635_130281760_130281838_130282150
ES_00033678	chr2	+	329	3	FSM	ENSMUSG00000027301.8	ENSMUST00000028764.6	537	3	100	108	100	-108	multi-exon	FALSE	canonical	1	2	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACCTTTAGCGCGCTTCC	NA	False	NA	NA	False	NA	NA	NA	130418192	130418866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130418250_130418510_130418713_130418796
ES_00033679	chr2	+	3801	6	FSM	ENSMUSG00000074797.12	ENSMUST00000156382.8	747	6	-40	-3014	-40	-2003	multi-exon	TRUE	canonical	3	338	junction_5	71.8888030224457	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTCGAACTTGCAGAGG	5390	False	NA	NA	False	NA	NA	NA	130509684	130520949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548
ES_00033680	chr2	+	559	1	FSM	ENSMUSG00000083953.2	ENSMUST00000121009.2	636	1	70	7	70	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAAGCTGGTTCTAGTT	NA	False	NA	NA	False	NA	NA	NA	130829973	130830532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130830000_130830500
ES_00033681	chr2	+	1527	6	NIC	ENSMUSG00000037514.19	novel	4266	7	NA	NA	0	12	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	205.341082104873	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCTTTCTTTGCGCGCTG	869	False	NA	25	True	NA	NA	NA	131104419	131138623	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_131104736_131115830_131116184_131124511_131124689_131129393_131129518_131135318_131135445_131138192
ES_00033682	chr2	+	769	2	ISM	ENSMUSG00000037514.19	ENSMUST00000131779.8	1304	5	-17	9096	-17	-9096	5prime_fragment	FALSE	canonical	3	620	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATTTCTAATGGAGCTT	847	False	NA	3	True	ATTAAA	-15	NA	131104397	131116261	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_131104736_131115830
ES_00033684	chr2	+	1320	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110179.9	1320	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	49.3128786423993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131363978_131364140_131366662
ES_00033686	chr2	+	4519	6	NNC	ENSMUSG00000027333.19	novel	1617	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	8	junction_2	52.8983931703034	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGATAATAAAAGAAGTGAC	NA	False	NA	-11	True	NA	NA	NA	131333912	131367061	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_131333957_131353903_131354138_131358139_131358364_131362014_131362189_131362331_131363092_131363978
ES_00033688	chr2	+	1279	1	FSM	ENSMUSG00000082990.2	ENSMUST00000121434.2	1031	1	43	-291	43	291	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTTTCATTACATCA	4364	False	NA	NA	False	NA	NA	NA	131941831	131943110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_131941800_131943100
ES_00033689	chr2	+	8073	13	FSM	ENSMUSG00000058793.15	ENSMUST00000089461.11	8073	13	0	0	0	0	multi-exon	FALSE	canonical	2	123	junction_1	89.520132744912	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	NA	False	NA	NA	False	AATAAA	-17	NA	132127858	132153970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
ES_00033690	chr2	+	8005	14	NNC	ENSMUSG00000058793.15	novel	8073	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_13	130.084860786785	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	NA	False	NA	NA	False	AATAAA	-17	NA	132127858	132153970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147715_132147782
ES_00033691	chr2	+	1316	4	NNC	ENSMUSG00000044991.11	novel	1076	3	NA	NA	-90	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	12.657891697365	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528760	132592975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132528902_132533869_132534052_132572619_132572770_132592132
ES_00033692	chr2	+	3799	14	NIC	ENSMUSG00000027353.15	novel	3397	18	NA	NA	2313	5	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	47.5562575602422	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAAGTCTTTTCTGAGG	NA	False	NA	NA	False	NA	NA	NA	132660456	132686122	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
ES_00033693	chr2	+	505	1	FSM	ENSMUSG00000083689.2	ENSMUST00000117717.2	610	1	51	54	51	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGTGCAGCCTGGAGAAA	NA	False	NA	NA	False	NA	NA	NA	133041581	133042086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_133041600_133042100
ES_00033694	chr2	+	559	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2376	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	263.350261059297	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACTCTGAGCCCAA	NA	False	NA	21	True	AATAAA	-31	NA	135488450	135493979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_135488469_135490827_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
ES_00033695	chr2	+	678	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2370	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	263.245588756963	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACTCTGAGCCCAA	NA	False	NA	21	True	AATAAA	-31	NA	135488456	135493979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_135488613_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
ES_00033697	chr2	+	5442	39	NIC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	18.1510475266798	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAACATCTACCAGAGTAT	NA	False	NA	2	True	AATAAA	-14	NA	135501462	135856513	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_135501651_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
ES_00033700	chr2	+	917	11	FSM	ENSMUSG00000027384.7	ENSMUST00000125913.2	1200	11	283	0	283	0	multi-exon	FALSE	canonical	1	2	junction_1	77.5835678478375	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTATGTTTCCCAGAA	NA	False	NA	11	True	AATAAA	-11	NA	140013232	140045552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_140013326_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ES_00033701	chr2	+	1147	4	FSM	ENSMUSG00000068205.15	ENSMUST00000110061.2	887	4	-160	-100	0	100	multi-exon	FALSE	canonical	1	5	junction_3	34.9380403953437	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGATCTTACTGTTT	NA	False	NA	NA	False	NA	NA	NA	140237354	140262515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261870
ES_00033704	chr2	+	3315	11	FSM	ENSMUSG00000027425.19	ENSMUST00000147747.8	3299	11	-16	0	0	0	multi-exon	FALSE	canonical	1	81	junction_2	109.46638753517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210902	144249596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144211078_144215110_144215290_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
ES_00033706	chr2	+	482	2	FSM	ENSMUSG00000027427.14	ENSMUST00000136999.2	2177	2	-24	1719	0	-1719	multi-exon	FALSE	canonical	3	55	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTATTTGAACTGATGT	597	False	NA	NA	False	NA	NA	NA	144369637	144370896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144369846_144370622
ES_00033708	chr2	+	636	4	FSM	ENSMUSG00000074749.11	ENSMUST00000156232.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	63.6989446973461	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATCTCTTCAGACTGGTG	NA	False	NA	NA	False	AATACA	-7	NA	146697828	146731215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146730940
ES_00033710	chr2	+	623	5	FSM	ENSMUSG00000027433.6	ENSMUST00000147057.2	623	5	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_4	30.8261252835967	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAAGCCTTTTTTTGGGGT	7812	False	NA	NA	False	NA	NA	NA	146871471	146880207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_146871549_146871646_146871897_146876773_146876819_146878583_146878716_146880088
ES_00033714	chr2	+	1926	4	NIC	ENSMUSG00000074736.11	novel	620	2	NA	NA	85	-57	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	14.7044966667418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGCTTGTTTGCTTACG	NA	False	NA	NA	False	NA	NA	NA	149672926	149846255	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_149672998_149741337_149741896_149772824_149772963_149845096
ES_00033715	chr2	+	2893	6	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	14	3281	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	30.2681350598282	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGTCAGAGATATAATGG	NA	False	NA	NA	False	ATTAAA	-35	NA	150023688	150038480	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150034210_150034461_150035201_150037050
ES_00033716	chr2	+	613	4	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	18	12937	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	25.381533094402	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTCTTGGCCTCGTTC	NA	False	NA	NA	False	NA	NA	NA	150023692	150048136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150047809
ES_00033717	chr2	+	2825	5	NNC	ENSMUSG00000060336.7	novel	2797	4	NA	NA	20	-34	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	8.20060973342836	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCCAGGAAAAGAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	150060012	150082611	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_150060119_150062250_150062333_150078611_150078739_150078948_150079010_150080162
ES_00033718	chr2	+	3023	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAGAAAAAAATCCACA	NA	False	NA	NA	False	NA	NA	NA	150099431	150112220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
ES_00033719	chr2	+	4130	4	NNC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	28	2026	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	53.766986979827	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGAGGTGTCCTGTGGT	NA	False	NA	7	True	NA	NA	NA	150153378	150170958	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_150153479_150165648_150165749_150165947_150166009_150167089
ES_00033720	chr2	+	205	1	Intergenic	novelGene_2388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTCAGCAATACCTGC	NA	False	NA	NA	False	NA	NA	NA	150730575	150730780	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_150730600_150730800
ES_00033721	chr2	+	1383	8	FSM	ENSMUSG00000027455.17	ENSMUST00000103160.5	1369	8	-14	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	482.170602376294	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGTACACATAATC	NA	False	NA	128	True	NA	NA	NA	151336209	151353334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ES_00033724	chr2	+	379	2	FSM	ENSMUSG00000032802.9	ENSMUST00000128882.2	375	2	-4	0	-4	0	multi-exon	FALSE	canonical	1	1	junction_1	0	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTGCCTCTGCACTA	NA	False	NA	NA	False	NA	NA	NA	151947431	151951242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151947477_151950908
ES_00033725	chr2	+	4201	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	0	58797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.0063573693612	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGATGCTAAAATC	NA	False	NA	NA	False	NA	NA	NA	152068795	152182569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152123767_152182531
ES_00033726	chr2	+	4183	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	0	58797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.0063573693612	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGATGCTAAAATC	NA	False	NA	NA	False	NA	NA	NA	152068795	152182569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152123761_152182543
ES_00033728	chr2	+	4157	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	8019	73115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	54.4151258122203	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTGTATTTGATTGACTTA	NA	False	NA	NA	False	NA	NA	NA	152076851	152196887	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_152076928_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152123766_152196852
ES_00033729	chr2	+	486	2	FSM	ENSMUSG00000027465.14	ENSMUST00000141373.2	666	2	0	180	0	-180	multi-exon	FALSE	canonical	3	226	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTGTTAGGAAATGTTA	6563	False	NA	NA	False	NA	NA	NA	152150118	152152558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152150352_152152305
ES_00033731	chr2	+	4322	18	NIC	ENSMUSG00000027469.17	novel	3654	18	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	218.393996520653	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2725	False	NA	17	True	NA	NA	NA	152689914	152737245	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_152690218_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ES_00033732	chr2	+	391	6	FSM	ENSMUSG00000074673.16	ENSMUST00000151641.3	526	6	135	0	135	0	multi-exon	FALSE	canonical	0	0	junction_2	0.489897948556636	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACATCGCCTGACTAC	693	False	NA	NA	False	NA	NA	NA	152831513	152841245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_152831583_152831943_152832019_152833497_152833589_152835088_152835130_152835983_152836072_152841218
ES_00033733	chr2	+	2279	17	FSM	ENSMUSG00000068040.11	ENSMUST00000137446.8	2274	17	-5	0	-5	0	multi-exon	FALSE	canonical	3	350	junction_1	54.9846214295415	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTCAGCATTGTAATCT	NA	False	NA	NA	False	CATAAA	-15	NA	153003217	153046782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454
ES_00033735	chr2	+	3655	18	NIC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	123.527310906505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	False	NA	41	True	AATAAA	-30	NA	153003466	153052386	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_153003492_153020805_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ES_00033737	chr2	+	4137	22	NIC	ENSMUSG00000027478.16	novel	4318	24	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	25.7619487720775	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAACGTGCTGTGTGTTT	NA	False	NA	20	True	ATTAAA	-12	NA	153491363	153529644	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ES_00033739	chr2	+	205	2	FSM	ENSMUSG00000044083.13	ENSMUST00000175856.3	1696	2	0	1491	0	-1491	multi-exon	FALSE	canonical	1	1	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGAAGCGAGGTGTTGC	7707	False	NA	NA	False	NA	NA	NA	153684900	153685174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_153685007_153685075
ES_00033740	chr2	+	4157	12	NNC	ENSMUSG00000038533.16	novel	6069	11	NA	NA	-93	97066	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	155.089576888662	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGGCTGTCCTGGAAC	5210	False	NA	NA	False	NA	NA	NA	154278307	154478342	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803_154379232_154478316
ES_00033742	chr2	+	2270	9	ISM	ENSMUSG00000059842.13	ENSMUST00000109702.2	3162	15	17049	-30	17049	-13	3prime_fragment	FALSE	canonical	2	3	junction_6	3.6721077053921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAACCACCCAGGCCTGA	60	False	NA	12	True	AATAAA	-22	NA	154472338	154488728	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_154472420_154474198_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
ES_00033747	chr2	+	1924	2	FSM	ENSMUSG00000027605.19	ENSMUST00000149788.2	3563	2	21	1618	-3	-1618	multi-exon	FALSE	canonical	3	60	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAAAAATAAAGAGCAA	2113	False	NA	NA	False	AGTAAA	-29	NA	155359973	155365593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155360205_155363900
ES_00033749	chr2	+	7966	33	FSM	ENSMUSG00000038241.17	ENSMUST00000109619.9	7977	33	11	0	-3	0	multi-exon	FALSE	canonical	2	9	junction_1	23.7977931946956	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGGCTGCTGTCTCTG	NA	False	NA	12	True	AATAAA	-19	NA	155798488	155840820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155798578_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ES_00033750	chr2	+	7997	33	FSM	ENSMUSG00000038241.17	ENSMUST00000039994.14	7979	33	-18	0	-18	0	multi-exon	FALSE	canonical	2	5	junction_8	24.4462899792586	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGGCTGCTGTCTCTG	NA	False	NA	12	True	AATAAA	-19	NA	155798459	155840820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810677_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ES_00033751	chr2	+	585	4	FSM	ENSMUSG00000038085.14	ENSMUST00000154227.2	613	4	28	0	28	0	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACAACTTTTTTAGGTAA	2851	False	NA	NA	False	NA	NA	NA	156175808	156181186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156175937_156177169_156177334_156180494_156180652_156181050
ES_00033753	chr2	+	5904	21	FSM	ENSMUSG00000027624.21	ENSMUST00000109574.8	5904	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	32.516303602962	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7780	False	NA	13	True	AATAAA	-28	NA	156262967	156385134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352655_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ES_00033758	chr2	+	431	3	FSM	ENSMUSG00000027642.16	ENSMUST00000142463.8	424	3	-7	0	-7	0	multi-exon	FALSE	canonical	0	0	junction_1	1227.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCAACGTGGATTCTCTC	NA	False	NA	NA	False	NA	NA	NA	157120929	157131481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157121133_157125503_157125698_157131447
ES_00033759	chr2	+	1085	4	NNC	ENSMUSG00000063019.6	novel	1107	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	116	junction_3	158.190461856024	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_157209561_157220968_157221175_157237829_157238611_157238632
ES_00033760	chr2	+	3900	15	FSM	ENSMUSG00000027646.16	ENSMUST00000092576.11	3887	15	-13	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	51.505696138329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	False	NA	10	True	ATTAAA	-16	NA	157266199	157313758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157266335_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157300762_157300781_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ES_00033761	chr2	+	1385	2	FSM	ENSMUSG00000067786.17	ENSMUST00000153739.9	1146	2	-226	-13	-226	0	multi-exon	FALSE	canonical	1	2	junction_1	0	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGTTCTTTTGTGGCTT	9035	False	NA	7	True	NA	NA	NA	157401771	157404437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157402181_157403461
ES_00033762	chr2	+	290	1	Intergenic	novelGene_2404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACACCTTTAATCTCAGC	6748	False	NA	NA	False	NA	NA	NA	157409874	157410164	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_157409900_157410200
ES_00033763	chr2	+	2369	16	NNC	ENSMUSG00000027649.16	novel	2442	16	NA	NA	50	-20	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_2	143.793308451943	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGTCGACCTTCAGTCTG	NA	False	NA	NA	False	GGGGCT	-5	NA	157579370	157733514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_157579480_157616330_157616520_157621734_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ES_00033765	chr2	+	4283	7	FSM	ENSMUSG00000027651.17	ENSMUST00000029180.14	4283	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	20.3749573960018	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870640	157920127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
ES_00033766	chr2	+	764	6	FSM	ENSMUSG00000027651.17	ENSMUST00000128206.8	764	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	79.3760669219633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACTGACTAGGACAGGTA	NA	False	NA	NA	False	NA	NA	NA	157885342	157916987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157912480_157912577_157916849
ES_00033768	chr2	+	1606	2	ISM	ENSMUSG00000044349.17	ENSMUST00000239310.2	1646	7	6712	12	6663	-6	3prime_fragment	FALSE	canonical	3	26	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTAAGTTGCCTTCGGTCA	NA	False	NA	15	True	NA	NA	NA	158224344	158228059	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_158225084_158227192
ES_00033769	chr2	+	7917	28	NIC	ENSMUSG00000027652.16	novel	8383	30	NA	NA	10	-3	combination_of_known_splicesites	FALSE	canonical	2	10	junction_1	25.2952930770104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTTGGTGTGTGCTTTTG	NA	False	NA	26	True	ATTAAA	-23	NA	158251811	158341170	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_158252024_158272336_158272501_158274653_158274841_158277377_158277510_158278409_158278589_158278922_158279072_158279179_158279397_158282689_158282892_158285157_158285326_158285746_158285862_158286492_158286641_158288048_158288114_158290239_158290370_158292096_158292231_158296043_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
ES_00033772	chr2	+	226	1	ISM	ENSMUSG00000037754.14	ENSMUST00000052927.11	6685	12	99409	1302	68672	-1302	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACTTCTCTTCAAATTAA	NA	False	NA	NA	False	NA	NA	NA	158606726	158606952	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_158606700_158607000
ES_00033777	chr2	+	381	1	FSM	ENSMUSG00000081151.2	ENSMUST00000120427.2	450	1	21	48	21	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATTACGAAGAAGGTGAA	NA	False	NA	NA	False	AAAAAG	-23	NA	161129160	161129541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_161129200_161129500
ES_00033778	chr2	+	913	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-21	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.1576417557513	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232711	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162233118_162233218_162233320_162238066_162238330_162238379
ES_00033779	chr2	+	553	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-20	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.5497436689865	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232712	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162232759_162233218_162233320_162238066_162238330_162238379
ES_00033780	chr2	+	721	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	11	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	33.6386021641143	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232743	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162232958_162233218_162233320_162238066_162238330_162238379
ES_00033781	chr2	+	844	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	12	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.2621655221252	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232744	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066_162238330_162238379
ES_00033782	chr2	+	380	1	FSM	ENSMUSG00000082296.2	ENSMUST00000121144.2	333	1	15	-62	15	62	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTCGCTAAGGAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	162647524	162647904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_162647500_162647900
ES_00033783	chr2	+	329	4	FSM	ENSMUSG00000017868.17	ENSMUST00000139053.2	447	4	118	0	118	0	multi-exon	FALSE	canonical	1	1	junction_1	9.39266853573691	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATGATCTGTACCACAAG	NA	False	NA	NA	False	CATAAA	-30	NA	162840149	162848753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_162840187_162845191_162845288_162846066_162846223_162848713
ES_00033785	chr2	+	669	1	FSM	ENSMUSG00000099632.2	ENSMUST00000190930.2	567	1	-102	0	-102	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCAGTCTCTGGCTTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	163261612	163262281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_163261600_163262300
ES_00033786	chr2	+	559	1	FSM	ENSMUSG00000053353.6	ENSMUST00000065731.5	459	1	-151	51	-151	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCAGATGAAATTTCTT	NA	False	NA	NA	False	NA	NA	NA	163314313	163314872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_163314300_163314900
ES_00033787	chr2	+	917	3	FSM	ENSMUSG00000017734.16	ENSMUST00000017878.3	1338	3	421	0	421	0	multi-exon	FALSE	canonical	3	4	junction_1	0	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCTCATTCTTCATAT	NA	False	NA	NA	False	AATAAA	-18	NA	164330161	164332687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164330309_164330487_164330626_164332055
ES_00033789	chr2	+	573	4	FSM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	-15	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	240.807438054189	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164404725_164405227_164405372_164407711_164407859_164410254
ES_00033790	chr2	+	452	2	FSM	ENSMUSG00000070529.8	ENSMUST00000094344.6	459	2	5	2	5	-2	multi-exon	FALSE	canonical	2	4	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACACTCTTAATAATCAC	-2	True	NA	NA	False	AATAAA	-20	NA	164497970	164499286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164498119_164498982
ES_00033791	chr2	+	947	8	ISM	ENSMUSG00000017299.14	ENSMUST00000109327.4	656	9	-62	2001	-14	0	5prime_fragment	FALSE	canonical	3	592	junction_6	60.090408076973	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTTGTGTTCAGT	NA	False	NA	13	True	NA	NA	NA	164587888	164601479	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
ES_00033793	chr2	+	923	7	FSM	ENSMUSG00000017760.17	ENSMUST00000133077.8	923	7	0	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_6	22.2966116010682	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATGCTCCGTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	164675949	164678955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905
ES_00033796	chr2	+	365	2	FSM	ENSMUSG00000017737.3	ENSMUST00000134382.2	462	2	97	0	97	0	multi-exon	FALSE	canonical	1	2	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGCTGGGGGACAGAGA	6680	False	NA	NA	False	AATAAA	-32	NA	164792712	164793182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164792922_164793026
ES_00033797	chr2	+	668	8	FSM	ENSMUSG00000017652.17	ENSMUST00000081310.11	668	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.77630927178938	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATCCCCAGGAGATGGA	NA	False	NA	NA	False	NA	NA	NA	164897599	164912665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164911548_164911636_164911736_164911769_164912641
ES_00033798	chr2	+	2277	16	FSM	ENSMUSG00000017897.19	ENSMUST00000088132.13	2447	16	80	90	80	-90	multi-exon	FALSE	canonical	0	0	junction_1	2.44040069569642	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCGGAAGAGTGTGGTG	NA	False	NA	1	True	AATAAA	-17	NA	165437031	165613549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_165437185_165506705_165506807_165524756_165524803_165527468_165527612_165529538_165529656_165555424_165555493_165557870_165558049_165566593_165566737_165573472_165573557_165596360_165596451_165603823_165603883_165605616_165605778_165608134_165608250_165608956_165609079_165611144_165611246_165612953
ES_00033799	chr2	+	1379	3	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	9	92	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGAAAACACAGCGGGGGAA	NA	False	NA	NA	False	GATAAA	-9	NA	165652202	165659721	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_165652330_165657273_165657453_165658648
ES_00033802	chr2	+	1824	3	ISM	ENSMUSG00000027678.18	ENSMUST00000139394.2	822	5	1605	-1268	1605	-2	3prime_fragment	FALSE	canonical	3	310	junction_1	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGCCCACTCATCATTT	NA	False	NA	14	True	ATTAAA	-20	NA	165910954	165913388	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_165911300_165911730_165911873_165912051
ES_00033809	chr2	+	1985	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345365	167358084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ES_00033811	chr2	+	2464	2	Genic_Genomic	ENSMUSG00000052368.3	novel	1361	1	NA	NA	-13998	0	multi-exon	FALSE	canonical	3	17	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGTCTTTATTCAC	NA	False	NA	21	True	AATAAA	-33	NA	168847946	168863305	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_168848074_168860968
ES_00033812	chr2	+	501	3	Intergenic	novelGene_2449	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTAGAGTGCTGTCCCG	NA	False	NA	NA	False	AATAAA	-13	NA	168847957	168878539	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168848074_168864580_168864668_168878241
ES_00033813	chr2	+	1361	1	FSM	ENSMUSG00000052368.3	ENSMUST00000180562.2	1361	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGTCTTTATTCAC	NA	False	NA	21	True	AATAAA	-33	NA	168861944	168863305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_168861900_168863300
ES_00033814	chr2	+	666	4	FSM	ENSMUSG00000052033.14	ENSMUST00000170167.8	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	391.486341467433	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGTCCATCCAGCGGGT	4167	False	NA	NA	False	NA	NA	NA	170353479	170360631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_170353858_170357658_170357767_170358469_170358611_170360592
ES_00033815	chr2	+	5911	5	ISM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	-107	0	-54	0	intron_retention	FALSE	canonical	3	206	junction_1	83.4056353012193	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGACGTAAAGGTAGTTT	NA	False	NA	13	True	AATAAA	-20	NA	172212546	172224368	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535
ES_00033816	chr2	+	5741	5	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	-54	1	intron_retention	FALSE	canonical	3	132	junction_1	114.73120761153	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGACGTAAAGGTAGTTTG	NA	False	NA	14	True	AATAAA	-21	NA	172212546	172224369	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535
ES_00033819	chr2	+	2855	8	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	0	51668	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	223.249654340752	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATATATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	172391512	172452210	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010_172400534_172452184
ES_00033821	chr2	+	1905	4	Intergenic	novelGene_2458	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	18.0800688297608	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATTTATATTTATTTAT	NA	False	NA	4	True	ATTAAA	-17	NA	172419575	172468690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_172419745_172420215_172420303_172449327_172449528_172467241
ES_00033823	chr2	+	1302	2	FSM	ENSMUSG00000027510.18	ENSMUST00000130430.2	1527	2	225	0	225	0	multi-exon	FALSE	canonical	3	757	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAATAAAACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	172865067	172876493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_172865175_172875298
ES_00033824	chr2	+	610	2	FSM	ENSMUSG00000016253.13	ENSMUST00000139390.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGGACCGTATCGGAGC	NA	False	NA	NA	False	NA	NA	NA	174266472	174267741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_174267047_174267705
ES_00033825	chr2	+	2798	6	NNC	ENSMUSG00000078906.10	novel	1281	4	NA	NA	0	1859	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	440.795009046155	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCTGTTACAGCTA	NA	False	NA	14	True	NA	NA	NA	174852033	174862900	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_174852115_174858430_174858558_174858749_174858811_174859951_174860218_174860301_174860386_174860721
ES_00033826	chr2	+	586	4	NNC	ENSMUSG00000078906.10	novel	1281	4	NA	NA	10	14474	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	492.380837247845	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	174852043	174875515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_174852115_174858430_174858558_174858749_174858811_174875188
ES_00033828	chr2	+	4332	4	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8577	2172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.24264068711928	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	174919716	174933883	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_174919821_174928292_174928422_174928631_174928693_174929845
ES_00033829	chr2	+	209	1	Intergenic	novelGene_2463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TACAATAAACAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	174964681	174964890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_174964700_174964900
ES_00033831	chr2	+	7557	4	NNC	ENSMUSG00000078896.12	novel	957	4	NA	NA	0	3698	intron_retention	TRUE	canonical	0	0	junction_3	43.1766397745612	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTTTC	NA	False	NA	NA	False	NA	NA	NA	175311855	175327662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_175311916_175319791_175319919_175320124_175321604_175321771
ES_00033832	chr2	+	5207	4	Fusion	ENSMUSG00000094932.8_ENSMUSG00000094475.8	novel	1497	4	NA	NA	0	2789	multi-exon	TRUE	canonical	0	0	junction_3	129.07448323438	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	175442797	175546001	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_175442925_175443129_175443191_175444347_175445442_175542076
ES_00033833	chr2	+	4475	5	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3652	2789	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	106.376689175778	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	175529677	175546001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688_175540750_175541906
ES_00033835	chr2	+	4428	5	NNC	ENSMUSG00000078887.11	novel	599	6	NA	NA	0	2788	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	25.617376914899	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	175661078	175675829	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_175661147_175664841_175664897_175670021_175670149_175671567_175672842_175672925
ES_00033840	chr2	+	2314	6	FSM	ENSMUSG00000078894.10	ENSMUST00000136719.2	2314	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	27.5288939116703	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTTCTTCGTCATGTT	3039	False	NA	NA	False	NA	NA	NA	175968365	175980514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_175968480_175971917_175971973_175973273_175973376_175977111_175977239_175977443_175977505_175978659
ES_00033841	chr2	+	957	1	Genic_Genomic	ENSMUSG00000094108.2	novel	NA	NA	NA	NA	-7	-318	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGATTGTTGGATGTGCTT	NA	False	NA	NA	False	NA	NA	NA	175999034	175999991	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_175999000_1.76e+08
ES_00033842	chr2	+	4830	3	Genic_Genomic	ENSMUSG00000084858.2	novel	2306	2	NA	NA	-8973	2352	multi-exon	FALSE	non_canonical	0	0	junction_2	11.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAACTTGTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	176031646	176046713	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_176031884_176040966_176041025_176042178
ES_00033844	chr2	+	6766	5	Fusion	ENSMUSG00000089951.9_ENSMUSG00000095199.9	novel	643	4	NA	NA	0	3674	multi-exon	TRUE	canonical	3	17	junction_3	40.0210881911025	28	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	176115453	176229252	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176115528_176123621_176123749_176123953_176124015_176125167_176127052_176224632
ES_00033845	chr2	+	1223	6	NNC	ENSMUSG00000078878.10	novel	1646	5	NA	NA	0	74556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	63.6094332626852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCTTTGATGCATTCCA	NA	False	NA	NA	False	NA	NA	NA	176400147	176488162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081_176411143_176412300_176412889_176487840
ES_00033846	chr2	+	5356	6	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	683	5	NA	NA	0	2918	multi-exon	TRUE	canonical	2	15	junction_5	51.5363949069005	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTTTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	176692769	176782058	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022_176704665_176778657
ES_00033847	chr2	+	3989	3	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	752	4	NA	NA	0	2767	multi-exon	FALSE	canonical	3	62	junction_1	51	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTATTAGAGGCAGTC	NA	False	NA	NA	False	AATGAA	-8	NA	176701473	176781907	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176701601_176776368_176776430_176778106
ES_00033850	chr2	+	1353	4	FSM	ENSMUSG00000078872.10	ENSMUST00000134614.8	973	4	-67	-313	-67	0	multi-exon	FALSE	canonical	3	47	junction_1	50.9313263129874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTATGAATATTGGCAATG	NA	False	NA	NA	False	NA	NA	NA	176771981	176779140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176772113_176776035_176776163_176776368_176776430_176778106
ES_00033852	chr2	+	771	6	NNC	ENSMUSG00000094786.2	novel	701	4	NA	NA	3	-90	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	82.9216497665115	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCTCGAAAAACATAAACGA	NA	False	NA	NA	False	NA	NA	NA	177190010	177200572	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177190111_177193535_177193591_177194885_177194988_177198701_177198829_177199035_177199097_177200246
ES_00033854	chr2	+	2533	1	Intergenic	novelGene_2466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	15	True	NA	NA	NA	177201570	177204103	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_177201600_177204100
ES_00033857	chr2	+	4873	5	NNC	ENSMUSG00000074519.12	novel	1413	4	NA	NA	-46	5443	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	14.3592304807744	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCTTGGTGATGATG	NA	False	NA	NA	False	NA	NA	NA	177665030	177681258	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177665175_177673047_177673175_177673382_177673444_177674593_177678222_177680345
ES_00033860	chr2	+	2329	9	FSM	ENSMUSG00000039108.15	ENSMUST00000058764.6	2566	9	237	0	237	0	multi-exon	FALSE	canonical	3	24	junction_2	16.9627348915203	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGTCCGTCACCTGT	NA	False	NA	19	True	AATAAA	-20	NA	179668427	179677258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179668592_179669692_179669829_179670750_179670868_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
ES_00033862	chr2	+	1710	11	NNC	ENSMUSG00000039069.20	novel	1444	7	NA	NA	438	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	22	junction_1	61.8627513128862	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712822	179727695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179712878_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172_179727591_179727611
ES_00033863	chr2	+	1447	7	FSM	ENSMUSG00000039069.20	ENSMUST00000108901.8	1444	7	-3	0	-3	0	multi-exon	FALSE	canonical	3	30	junction_1	63.2077702677623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179713582	179727695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ES_00033865	chr2	+	4131	1	FSM	ENSMUSG00000039041.16	ENSMUST00000147383.2	4131	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTATGGTCTGGGCCTGTG	NA	False	NA	0	True	AATAAA	-20	NA	179813946	179818077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179813900_179818100
ES_00033867	chr2	+	483	5	FSM	ENSMUSG00000039001.13	ENSMUST00000148629.2	481	5	-2	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	969.972422288386	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899169	179900235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022
ES_00033870	chr2	+	2173	8	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	0	-5	at_least_one_novel_splicesite	TRUE	canonical	3	58	junction_7	13.998542198153	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTGGCCGTGTTCT	NA	False	NA	17	True	AATAAA	-17	NA	180231254	180237624	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180237000
ES_00033873	chr2	+	2038	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	57	junction_3	52.1550453966879	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367192	180384073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ES_00033879	chr2	+	510	2	FSM	ENSMUSG00000016344.15	ENSMUST00000135011.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	4003	False	NA	1	True	AATAAA	-17	NA	180829706	180830297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_180829894_180829974
ES_00033885	chr2	+	4523	35	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	1	0	intron_retention	FALSE	canonical	3	25	junction_10	69.6674316884316	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	13	True	AATAAA	-14	NA	180961532	180998407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980027_180980148_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
ES_00033886	chr2	+	4442	36	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	1	0	intron_retention	FALSE	canonical	3	25	junction_10	77.8277218329965	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	13	True	AATAAA	-14	NA	180961532	180998407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980027_180980148_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180998052_180998150
ES_00033887	chr2	+	4275	33	NNC	ENSMUSG00000038685.19	novel	4307	33	NA	NA	10	0	intron_retention	FALSE	canonical	3	18	junction_32	66.4120659217886	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	13	True	AATAAA	-14	NA	180961587	180998407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997102_180997346_180997443_180997606_180997690
ES_00033888	chr2	+	3112	27	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	39	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_25	67.7102249015097	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	3444	False	NA	13	True	AATAAA	-14	NA	180977767	180998407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
ES_00033889	chr2	+	4158	5	NIC	ENSMUSG00000038685.19	novel	4448	33	NA	NA	365	0	intron_retention	FALSE	canonical	3	254	junction_2	27.4624743968929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	7234	False	NA	13	True	AATAAA	-14	NA	180992285	180998407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145
ES_00033893	chr2	+	4855	6	NIC	ENSMUSG00000027582.17	novel	4892	6	NA	NA	-14	0	intron_retention	FALSE	canonical	1	4	junction_5	59.0410027015124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTGGCTCTTGGTTGCT	NA	False	NA	NA	False	ATTAAA	-13	NA	181007230	181025419	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022195
ES_00033895	chr2	+	2466	2	NIC	ENSMUSG00000085028.3	novel	1143	8	NA	NA	635	11	intron_retention	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTTGTTTAGTTTT	NA	False	NA	6	True	ATTAAA	-16	NA	181026838	181029390	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_181028800_181028885
ES_00033896	chr2	+	3952	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	-44	-2923	0	344	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTGGCCATTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	181138979	181160103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
ES_00033898	chr2	+	3714	2	FSM	ENSMUSG00000000827.19	ENSMUST00000130261.2	764	2	-912	-2038	-912	0	multi-exon	FALSE	canonical	3	1175	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAATTCACTATGCTCC	NA	False	NA	NA	False	NA	NA	NA	181153458	181159164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181154881_181156872
ES_00033900	chr2	+	1077	10	NNC	ENSMUSG00000059540.16	novel	1183	10	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.622784110217	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGCTTCAGCTGGGTCC	2314	False	NA	13	True	ATTAAA	-27	NA	181322124	181329855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_181322194_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
ES_00033901	chr2	+	3499	7	FSM	ENSMUSG00000027589.15	ENSMUST00000108754.8	3499	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	27.4028587316482	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTATTCTCAGTATTGCT	NA	False	NA	11	True	AATAAA	-14	NA	181479705	181499239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493374_181493503_181496730
ES_00033902	chr2	-	1749	15	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	0	49567	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	273.026275180202	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCTATGGTGGCCTGT	4013	False	NA	NA	False	NA	NA	NA	3513780	3440319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_3440350_3489891_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ES_00033905	chr2	-	3295	9	FSM	ENSMUSG00000039449.15	ENSMUST00000153881.8	3295	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	10.6294108491487	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTATTTGTCTTGTGT	NA	False	NA	NA	False	AATAGA	-21	NA	4656917	4628747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ES_00033906	chr2	-	3578	21	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	0	525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.760264362354	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCATTTCCCATTTGCT	NA	False	NA	NA	False	NA	NA	NA	5017564	4993999	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_4994122_4995534_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
ES_00033907	chr2	-	1343	6	FSM	ENSMUSG00000026669.15	ENSMUST00000125349.8	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_5	93.7285442114621	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	870	False	NA	0	True	AATAAA	-38	NA	5000705	4995534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531
ES_00033908	chr2	-	869	3	FSM	ENSMUSG00000026669.15	ENSMUST00000139882.8	869	3	0	0	0	0	multi-exon	FALSE	canonical	3	854	junction_1	13	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCTGCTTGTCTGTAA	3507	False	NA	NA	False	NA	NA	NA	4998068	4995841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_4996288_4996905_4996949_4997688
ES_00033909	chr2	-	508	2	FSM	ENSMUSG00000026669.15	ENSMUST00000146257.2	508	2	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCCATGAAGCCCAAAG	2611	False	NA	NA	False	NA	NA	NA	5010130	5008852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5008987_5009756
ES_00033910	chr2	-	6904	11	NNC	ENSMUSG00000039145.17	novel	6962	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.0288657435791	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTGGGTTGTCTGTTTC	NA	False	NA	-2	True	AATAAA	-18	NA	5719314	5298270	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_5303913_5306349_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5718956
ES_00033911	chr2	-	1199	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	91	junction_9	296.801433468727	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAAGCCTACTGTGATG	NA	False	NA	-8	True	AATAAA	-14	NA	5849752	5799476	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838466_5838525_5846763_5846836_5849645
ES_00033916	chr2	-	579	1	FSM	ENSMUSG00000118578.2	ENSMUST00000238876.2	818	1	135	104	135	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGGACTCGGTATC	NA	False	NA	NA	False	NA	NA	NA	6327756	6327177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6327200_6327800
ES_00033918	chr2	-	1336	3	NNC	ENSMUSG00000082953.4	novel	953	4	NA	NA	310	473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.5	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAACTAGT	NA	False	NA	NA	False	NA	NA	NA	9046985	9045461	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_9046638_9046719_9046821_9046926
ES_00033919	chr2	-	1176	3	NNC	ENSMUSG00000082953.4	novel	953	4	NA	NA	310	473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAACTAGT	NA	False	NA	NA	False	NA	NA	NA	9046985	9045461	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_9046479_9046720_9046821_9046926
ES_00033920	chr2	-	649	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8804	19672	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.084336693988	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGTGAGTAATTTGACC	NA	False	NA	NA	False	NA	NA	NA	10370048	10324421	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_10324455_10344090_10344284_10346331_10346540_10350061_10350197_10369968
ES_00033922	chr2	-	647	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8804	19672	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.084336693988	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGTGAGTAATTTGACC	NA	False	NA	NA	False	NA	NA	NA	10370048	10324421	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_10324457_10344094_10344284_10346331_10346540_10350061_10350197_10369968
ES_00033923	chr2	-	348	1	FSM	ENSMUSG00000081367.3	ENSMUST00000118090.3	421	1	109	-36	109	36	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTTCATTATAAAATGA	NA	False	NA	NA	False	NA	NA	NA	10903793	10903445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_10903400_10903800
ES_00033924	chr2	-	4799	15	FSM	ENSMUSG00000026773.20	ENSMUST00000192949.6	4801	15	0	2	0	-2	multi-exon	FALSE	canonical	3	18	junction_2	9.7969174660571	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATTAATAGACTATTGT	NA	False	NA	NA	False	AATAAA	-12	NA	11558888	11476245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
ES_00033925	chr2	-	4756	16	FSM	ENSMUSG00000026773.20	ENSMUST00000179584.8	4756	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	12.3475593629762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTGTCAGTTTTCTTTC	6308	False	NA	30	True	NA	NA	NA	11506912	11476601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11479355_11485008_11485183_11486057_11486145_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
ES_00033926	chr2	-	436	3	FSM	ENSMUSG00000026773.20	ENSMUST00000155167.8	646	3	0	210	0	90	multi-exon	FALSE	canonical	3	29	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTATGTATCTGTA	6612	False	NA	NA	False	NA	NA	NA	11506608	11497330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11497468_11498713_11498840_11506435
ES_00033927	chr2	-	3626	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	0	3	intron_retention	FALSE	canonical	3	40	junction_19	66.9909695406776	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTACTGTCATTTTTAAG	NA	False	NA	3	True	ATTAAA	-40	NA	11782393	11747380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
ES_00033928	chr2	-	820	6	FSM	ENSMUSG00000058594.16	ENSMUST00000123723.2	820	6	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_5	20.0658914578944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATCAGAGTAAGGCTCTC	NA	False	NA	NA	False	NA	NA	NA	11763284	11756486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090
ES_00033930	chr2	-	1592	8	FSM	ENSMUSG00000026727.11	ENSMUST00000114791.9	1604	8	0	12	0	-12	multi-exon	FALSE	canonical	2	5	junction_6	120.515389820858	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCCTCTCACATCAGTT	7125	False	NA	NA	False	ATTAAA	-9	NA	13276144	13081643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13275721_13275834_13276010
ES_00033931	chr2	-	1873	1	FSM	ENSMUSG00000102691.2	ENSMUST00000194117.2	1873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAATTGTTTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	13168434	13166561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13166600_13168400
ES_00033932	chr2	-	3209	1	NIC	ENSMUSG00000054057.3	novel	3217	2	NA	NA	349	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTTAACAAATAAAATAGC	NA	False	NA	-33	True	ATTAAA	-7	NA	18033222	18030013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_18030000_18033200
ES_00033934	chr2	-	3419	2	NNC	ENSMUSG00000054074.10	novel	4376	2	NA	NA	409	-296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTTAGCTTTATTTTC	3134	False	NA	-44	True	AGTAAA	-33	NA	18052851	18049189	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_18052234_18052476
ES_00033935	chr2	-	3010	1	FSM	ENSMUSG00000081619.2	ENSMUST00000118087.2	414	1	-1518	-1078	-1518	1078	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTTCTGCAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	18185771	18182761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_18182800_18185800
ES_00033936	chr2	-	5070	13	FSM	ENSMUSG00000026740.13	ENSMUST00000091418.12	5070	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	17.4712064710928	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTCTGAAGTGAAAACAAA	NA	False	NA	NA	False	AATAAA	-17	NA	18397622	18211143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_18214232_18222055_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
ES_00033937	chr2	-	3329	9	NIC	ENSMUSG00000026737.13	novel	3477	10	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	29.756301853557	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGCTTCTCTGTGCTG	NA	False	NA	-1	True	AATAAA	-20	NA	19002937	18847066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18893862_18894016_18911039_18911137_18912865_18912964_19002662
ES_00033939	chr2	-	732	3	Genic_Genomic	ENSMUSG00000083863.2	novel	672	1	NA	NA	0	34422	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTAGTATAGCAAGAACT	NA	False	NA	NA	False	NA	NA	NA	22477974	22442880	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_22442907_22444535_22444566_22477298
ES_00033940	chr2	-	731	3	Genic_Genomic	ENSMUSG00000083863.2	novel	672	1	NA	NA	0	34422	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTAGTATAGCAAGAACT	NA	False	NA	NA	False	NA	NA	NA	22477974	22442880	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_22442907_22444535_22444567_22477300
ES_00033941	chr2	-	210	2	Intergenic	novelGene_2173	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	57	junction_1	0	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9163	False	NA	NA	False	NA	NA	NA	22865875	22816183	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_22816343_22865824
ES_00033943	chr2	-	3549	10	NNC	ENSMUSG00000026779.7	novel	1201	7	NA	NA	9	-9386	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_1	46.3896540189728	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATTAAAAGCTTGTCT	NA	False	NA	NA	False	ATTAAA	-16	NA	23045900	23015003	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_23016302_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ES_00033947	chr2	-	214	2	Antisense	novelGene_ENSMUSG00002075034.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	941	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTTGTGTGTATATTTG	NA	False	NA	NA	False	NA	NA	NA	24841827	24803659	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_24803692_24841645
ES_00033948	chr2	-	776	3	NNC	ENSMUSG00000036850.5	novel	776	2	NA	NA	31	60469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	158.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTTGTGTGTATATTTG	NA	False	NA	NA	False	NA	NA	NA	24865079	24803659	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_24803693_24864130_24864694_24864899
ES_00033949	chr2	-	1222	8	NNC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	26.6182383384945	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGCGAGTGGCTGGC	9398	False	NA	-33	True	AATAAA	-15	NA	24825183	24815365	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_24815689_24815767_24815846_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ES_00033950	chr2	-	974	6	FSM	ENSMUSG00000026972.16	ENSMUST00000129784.8	974	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.5490399243972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCAGGAAGAGGCTGAGG	9424	False	NA	NA	False	NA	NA	NA	24825157	24816066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_24816461_24816594_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ES_00033951	chr2	-	3324	2	NNC	ENSMUSG00000059555.7	novel	3255	2	NA	NA	181	267	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTTAATGGTAAATTCAC	8570	False	NA	NA	False	NA	NA	NA	25086590	25082710	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25085938_25086493
ES_00033952	chr2	-	3521	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	-14	-252	-14	252	multi-exon	FALSE	canonical	3	13	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTGT	8248	False	NA	NA	False	NA	NA	NA	25086912	25082725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25085938_25086603
ES_00033953	chr2	-	2561	12	FSM	ENSMUSG00000006471.19	ENSMUST00000148589.9	2362	12	0	-199	0	0	multi-exon	FALSE	canonical	3	15	junction_11	51.8266340793998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145398	25137240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25137867_25137971_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25145040_25145228
ES_00033959	chr2	-	3602	18	ISM	ENSMUSG00000026959.14	ENSMUST00000114310.10	4276	21	7584	1	-6114	-1	3prime_fragment	FALSE	canonical	2	8	junction_2	6.39852924277042	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCGGGTTTTGTCTATT	9878	False	NA	-5	True	NA	NA	NA	25201523	25181193	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_25182497_25184449_25184561_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ES_00033962	chr2	-	765	6	FSM	ENSMUSG00000015090.14	ENSMUST00000137417.2	645	6	-118	-2	108	-1	multi-exon	FALSE	canonical	2	4	junction_1	2.57681974534503	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTGCTTTTGTCTGTCT	6366	False	NA	0	True	AATAAA	-18	NA	25359287	25356721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25356844_25357298_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999
ES_00033963	chr2	-	1133	5	FSM	ENSMUSG00000015090.14	ENSMUST00000144016.8	1327	5	0	194	0	-193	multi-exon	FALSE	canonical	2	4	junction_4	2.54950975679639	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTGCTGTTTGGGCCCC	6258	False	NA	NA	False	NA	NA	NA	25359395	25356916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999
ES_00033964	chr2	-	619	4	NNC	ENSMUSG00000036504.7	novel	937	3	NA	NA	0	20010	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	366.051301808306	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCAGAAATTGAGGG	5546	False	NA	NA	False	NA	NA	NA	25464890	25443431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25443459_25463440_25463712_25464199_25464325_25464694
ES_00033965	chr2	-	617	4	NNC	ENSMUSG00000036504.7	novel	937	3	NA	NA	0	20010	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	366.051301808306	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCAGAAATTGAGGG	5546	False	NA	NA	False	NA	NA	NA	25464890	25443431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25443458_25463441_25463712_25464199_25464325_25464694
ES_00033966	chr2	-	3908	6	FSM	ENSMUSG00000015087.15	ENSMUST00000150206.8	3908	6	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_5	19.94993734326	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGAGGTACCTACTCTG	NA	False	NA	NA	False	NA	NA	NA	25480384	25474122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286
ES_00033970	chr2	-	814	3	FSM	ENSMUSG00000036352.17	ENSMUST00000123275.8	814	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25897932	25888554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25889080_25896538_25896626_25897730
ES_00033973	chr2	-	3003	13	NNC	ENSMUSG00000036327.19	novel	4011	9	NA	NA	144	67175	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.6957271203186	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCAGAGGGCAACAGGAG	NA	False	NA	NA	False	NA	NA	NA	26127393	26031473	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_26031512_26100066_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
ES_00033975	chr2	-	2878	5	NNC	ENSMUSG00000036281.14	novel	4368	23	NA	NA	234	1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	29.4140697626153	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATAGCCTTTGGTGATTTT	NA	False	NA	-2	True	AATAAA	-32	NA	26257548	26252775	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26257123_26257202
ES_00033980	chr2	-	527	3	FSM	ENSMUSG00000026925.17	ENSMUST00000150907.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGCAAAGGACACCCTC	9710	False	NA	NA	False	NA	NA	NA	26290488	26289271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26289587_26290047_26290156_26290384
ES_00033982	chr2	-	767	4	Intergenic	novelGene_2187	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	13	junction_2	19.7033556081755	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTTTGCTGTCAGCAC	NA	False	NA	2	True	AATAAA	-24	NA	26530256	26527179	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_26527646_26528052_26528108_26529424_26529484_26530069
ES_00033983	chr2	-	4877	5	FSM	ENSMUSG00000036160.14	ENSMUST00000142131.2	748	5	-103	-4026	-14	-21	multi-exon	FALSE	canonical	3	14	junction_4	123.331615979034	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTGCTTTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	26792905	26778660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792599
ES_00033984	chr2	-	955	9	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	108.788498932562	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCAGTCTGAAACCGTT	NA	False	NA	-2	True	AATAAA	-22	NA	26806357	26803391	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ES_00033985	chr2	-	583	6	FSM	ENSMUSG00000009621.19	ENSMUST00000149758.8	1027	6	0	444	0	20	multi-exon	FALSE	canonical	3	54	junction_1	6.33719180710194	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATGCCTGTGTCCAGGGT	NA	False	NA	NA	False	NA	NA	NA	27167353	27158910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227
ES_00033986	chr2	-	656	2	FSM	ENSMUSG00000009621.19	ENSMUST00000146843.2	659	2	0	3	0	-3	multi-exon	FALSE	canonical	3	59	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATACCTGGCCCCGTATTT	NA	False	NA	NA	False	NA	NA	NA	27161810	27159595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_27160228_27161786
ES_00033987	chr2	-	677	3	FSM	ENSMUSG00000035666.15	ENSMUST00000156468.2	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGCAGGTGCCTCTTGG	NA	False	NA	NA	False	AATACA	-29	NA	28730298	28725215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28725386_28726036_28726140_28729894
ES_00033991	chr2	-	2329	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	57.2362155894325	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677634	29666121	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_29666412_29666610_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ES_00033992	chr2	-	200	1	Intergenic	novelGene_2195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATGTGGTTTTTAGAGA	4649	False	NA	NA	False	NA	NA	NA	29768863	29768663	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_29768700_29768900
ES_00033994	chr2	-	3916	8	FSM	ENSMUSG00000039686.15	ENSMUST00000154231.8	3934	8	18	0	12	0	multi-exon	FALSE	canonical	3	72	junction_1	7.43955232359516	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACTTAAAAAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-2	NA	30014579	29995319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673_30001111_30001193_30001345_30003257_30003494_30014287
ES_00033995	chr2	-	1796	13	NIC	ENSMUSG00000039648.15	novel	2038	13	NA	NA	-36	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	50.5477634410158	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTTCTCTCTTCCTTTG	9500	False	NA	-2	True	AATAAA	-26	NA	30084160	30075134	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065
ES_00033996	chr2	-	2041	13	FSM	ENSMUSG00000039648.15	ENSMUST00000148555.8	2038	13	0	-3	0	1	multi-exon	FALSE	canonical	3	17	junction_10	50.7807788439681	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTTCTCTCTTCCTTTG	NA	False	NA	-2	True	AATAAA	-26	NA	30095828	30075134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
ES_00033997	chr2	-	1816	11	NIC	ENSMUSG00000039648.15	novel	2038	13	NA	NA	-62	-2	intron_retention	FALSE	canonical	3	127	junction_5	13.733535597216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCAGCTTCTCTCTTC	9474	False	NA	-7	True	AATAAA	-21	NA	30084186	30075139	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065
ES_00033998	chr2	-	350	1	FSM	ENSMUSG00000100747.5	ENSMUST00000187343.2	1429	1	604	475	604	223	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGCCGCATAATTCCG	6044	False	NA	NA	False	NA	NA	NA	30127631	30127281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30127300_30127600
ES_00034000	chr2	-	1873	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	-22	0	20	multi-exon	FALSE	canonical	1	5	junction_7	147.537824716993	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCTGAAAGTGGATGGA	NA	False	NA	10	True	AATAAA	-36	NA	30249344	30234800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ES_00034001	chr2	-	1823	9	FSM	ENSMUSG00000026860.17	ENSMUST00000151354.8	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	111.252808953302	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCTCCCTTAAGGCAGA	NA	False	NA	50	True	NA	NA	NA	30249317	30235146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ES_00034005	chr2	-	8560	16	NNC	ENSMUSG00000075415.14	novel	4726	17	NA	NA	0	20814	intron_retention	TRUE	non_canonical	0	0	junction_1	42.8143278198627	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGGTCTCACACACA	4837	False	NA	NA	False	NA	NA	NA	31031951	30895403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_30895424_30916466_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ES_00034007	chr2	-	3975	3	NIC	ENSMUSG00000050592.9	novel	4107	2	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	4	3481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTCTGGTGGCAAT	NA	False	NA	NA	False	AATAAA	-35	NA	31974881	31956878	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_31959786_31972595_31973621_31974838
ES_00034008	chr2	-	228	1	FSM	ENSMUSG00000026819.16	ENSMUST00000194756.2	3821	1	143	3450	78	-3450	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCCTAAGAAGTGAGCAG	2439	False	NA	NA	False	NA	NA	NA	32321038	32320810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32320800_32321000
ES_00034012	chr2	-	209	2	Intergenic	novelGene_2216	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCAATCTTTATGGAG	NA	False	NA	NA	False	NA	NA	NA	32757231	32743695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_32743855_32757181
ES_00034013	chr2	-	458	5	FSM	ENSMUSG00000026792.17	ENSMUST00000145578.8	458	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	12.5772612281053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAGGTGAGCAGTCTTG	NA	False	NA	NA	False	GGGGCT	-24	NA	32851605	32847267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32847306_32848169_32848227_32849528_32849626_32851055_32851268_32851551
ES_00034014	chr2	-	438	3	FSM	ENSMUSG00000026792.17	ENSMUST00000145699.2	376	3	0	-62	0	62	multi-exon	FALSE	canonical	2	2	junction_1	12	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCGGATTCTCCACGGG	NA	False	NA	NA	False	NA	NA	NA	32851612	32850196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32850384_32851055_32851268_32851573
ES_00034015	chr2	-	1339	9	FSM	ENSMUSG00000026791.15	ENSMUST00000193695.2	1339	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	58.5742050735646	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCTGGGAGCCCCGAG	4015	False	NA	NA	False	NA	NA	NA	32872029	32863596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
ES_00034016	chr2	-	909	3	FSM	ENSMUSG00000026791.15	ENSMUST00000130769.2	909	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_2	2	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTCTGAGGAGGGCTGG	4013	False	NA	NA	False	NA	NA	NA	32872031	32866922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32867073_32870013_32870114_32871372
ES_00034017	chr2	-	3731	30	NNC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	21	-5	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_29	23.2414816328455	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCCCTGTTACTGCCTG	NA	False	NA	NA	False	TATAAA	-13	NA	33020599	32876240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_32876843_32879517_32879645_32880575_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995031_33020435
ES_00034018	chr2	-	3928	1	FSM	ENSMUSG00000104277.2	ENSMUST00000193214.2	3789	1	-151	12	-151	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAGTTCCACTATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32892478	32888550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32888600_32892500
ES_00034020	chr2	-	1277	11	ISM	ENSMUSG00000038860.16	ENSMUST00000049618.9	3678	28	423	39336	423	-6401	5prime_fragment	FALSE	canonical	3	93	junction_3	11.577564510725	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGAGAGCAGCTCAT	6224	False	NA	NA	False	NA	NA	NA	32975955	32915721	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886
ES_00034021	chr2	-	6467	2	FSM	ENSMUSG00000068966.11	ENSMUST00000134589.2	664	2	8	-5811	8	0	multi-exon	FALSE	canonical	3	85	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTGGTCTCTGTGTT	NA	False	NA	0	True	AATAAA	-18	NA	33321321	33296119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_33302508_33321242
ES_00034022	chr2	-	5155	4	NIC	ENSMUSG00000026788.14	novel	1828	4	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	1.4142135623731	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTTTTCACTCATGT	NA	False	NA	1	True	AATAAA	-27	NA	33358544	33340296	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_33345136_33352277_33352370_33354925_33355050_33358444
ES_00034024	chr2	-	1549	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	81082	-903	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGTTTACCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	33916659	33909203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_33910509_33915810_33915970_33916574
ES_00034025	chr2	-	727	1	FSM	ENSMUSG00000087635.4	ENSMUST00000117516.2	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCAACGCACGCATTTAA	NA	False	NA	NA	False	AATAAA	-36	NA	34540252	34539525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34539500_34540300
ES_00034026	chr2	-	1872	6	FSM	ENSMUSG00000035949.16	ENSMUST00000113078.8	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	77.1403914949879	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	NA	False	NA	-3	True	ATTAAA	-15	NA	34713193	34695349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569
ES_00034027	chr2	-	2179	8	NIC	ENSMUSG00000035949.16	novel	1923	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	121.468900865823	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTTCTTTGAAATTG	9230	False	NA	-3	True	ATTAAA	-15	NA	34716213	34695349	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715691_34716083_34716183
ES_00034029	chr2	-	1728	4	ISM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	34	6500	0	0	5prime_fragment	FALSE	canonical	3	82	junction_2	161.085898410341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCAGCTCCAATATGTT	9230	False	NA	NA	False	NA	NA	NA	34716213	34701850	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_34703022_34712569_34712988_34715973_34716083_34716183
ES_00034031	chr2	-	852	2	FSM	ENSMUSG00000035949.16	ENSMUST00000126051.2	852	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAAGCAAAACAAA	9216	False	NA	NA	False	NA	NA	NA	34716227	34715274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34716083_34716183
ES_00034032	chr2	-	1844	9	NIC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	8	-3	combination_of_known_splicesites	FALSE	canonical	3	104	junction_8	158.265945089271	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTTGGCGTTGGTATT	NA	False	NA	-17	True	AATAAA	-11	NA	34760937	34742116	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34760761
ES_00034035	chr2	-	3718	8	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	488	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_7	27.6708053621096	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35352755	35290190	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35352356
ES_00034036	chr2	-	3056	4	FSM	ENSMUSG00000009030.15	ENSMUST00000112940.8	3056	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	79.6366749682582	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATATTTAAAAGCCA	NA	False	NA	-19	True	AATAAA	-10	NA	37249265	37240599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363
ES_00034037	chr2	-	9290	22	NIC	ENSMUSG00000075376.11	novel	8948	22	NA	NA	-88	235	intron_retention	TRUE	canonical	0	0	junction_20	11.6766720944717	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAATACTGAACTTACAG	NA	False	NA	NA	False	AATAGA	-34	NA	37313003	37259845	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_37265441_37266653_37266803_37266900_37267009_37267145_37267281_37267366_37267449_37267862_37267948_37268319_37268534_37268869_37269017_37271881_37272050_37272794_37273229_37275257_37275473_37279596_37279903_37288255_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527_37304825_37309443_37309480_37312778
ES_00034041	chr2	-	4532	2	FSM	ENSMUSG00000066798.4	ENSMUST00000053098.6	4535	2	0	3	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGGCTTGTGTATT	NA	False	NA	-1	True	AATAAA	-18	NA	37320931	37315514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37319936_37320820
ES_00034043	chr2	-	3177	19	NNC	ENSMUSG00000026915.17	novel	3144	18	NA	NA	0	37123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	166.218443584502	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAACAAAAACCCTCAAAC	NA	False	NA	NA	False	NA	NA	NA	37593287	37422756	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_37422789_37473166_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
ES_00034044	chr2	-	3252	18	NIC	ENSMUSG00000026915.17	novel	3144	18	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	115	junction_17	145.431799495496	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGTTCTTGTGGCCT	NA	False	NA	-4	True	AATAAA	-14	NA	37593870	37473167	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593678
ES_00034047	chr2	-	200	2	Antisense	novelGene_ENSMUSG00000085950.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	5176	junction_1	0	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATACCAACAACTC	NA	False	NA	NA	False	NA	NA	NA	38343496	38255191	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_38255337_38343441
ES_00034048	chr2	-	483	5	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	0	7833	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16312.9057650683	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGACATGTCTTA	NA	False	NA	NA	False	NA	NA	NA	38895134	38883758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_38883798_38891591_38891778_38894118_38894201_38894743_38894881_38895095
ES_00034049	chr2	-	4776	23	FSM	ENSMUSG00000026754.17	ENSMUST00000039165.15	4869	23	0	93	0	13	multi-exon	FALSE	canonical	3	9	junction_22	11.0304799353113	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTATCATATTTCTAGGA	NA	False	NA	NA	False	NA	NA	NA	38955553	38906259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955392
ES_00034050	chr2	-	2787	24	NIC	ENSMUSG00000026754.17	novel	2894	24	NA	NA	11	-16	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	11.1178597442586	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCCATTTAAAGATGAAAA	NA	False	NA	NA	False	NA	NA	NA	38955486	38907680	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_38907894_38908350_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
ES_00034053	chr2	-	2198	8	FSM	ENSMUSG00000036890.14	ENSMUST00000049051.13	2197	8	2	-3	2	0	multi-exon	FALSE	canonical	3	41	junction_7	5.16661180572146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTTGCGTCTAAGTGTG	NA	False	NA	-3	True	AATAAA	-28	NA	44646447	44454423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279
ES_00034054	chr2	-	1543	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_13	125.016069972941	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCACTTAGTATGTT	NA	False	NA	NA	False	TATAAA	-12	NA	48839234	48795327	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839105
ES_00034056	chr2	-	2325	6	NNC	ENSMUSG00000036249.17	novel	2057	5	NA	NA	-2528	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	11.3736537664903	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51827703	51814459	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843_51825263_51827678
ES_00034060	chr2	-	2506	1	FSM	ENSMUSG00000083287.5	ENSMUST00000121574.2	684	1	-55	-1767	-55	1767	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAAACATCAT	NA	False	NA	NA	False	AATAAA	-26	NA	53586871	53584365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_53584400_53586900
ES_00034065	chr2	-	1671	2	NNC	ENSMUSG00000087455.8	novel	1635	3	NA	NA	1792	-23	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGATTAAACGTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	59215234	59212868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_59214299_59214993
ES_00034066	chr2	-	233	2	Antisense	novelGene_ENSMUSG00000035168.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAAAAACACTACTTC	NA	False	NA	NA	False	NA	NA	NA	59532893	59475806	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_59475839_59532692
ES_00034067	chr2	-	2084	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	0	-12	0	12	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTTCTTATTGGGCAT	NA	False	NA	12	True	AATAAA	-32	NA	59712928	59682695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
ES_00034068	chr2	-	1985	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	17.6150503831241	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712918	59682707	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
ES_00034069	chr2	-	7842	36	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39411	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_32	40.5478804901674	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTTTTTTTAGGGG	1581	False	NA	-4	True	AATAAA	-19	NA	59881003	59729706	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
ES_00034071	chr2	-	7316	34	NNC	ENSMUSG00000026987.17	novel	7576	34	NA	NA	39375	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_31	39.6342785106258	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCACATAGATCAGAGTTC	1545	False	NA	37	True	NA	NA	NA	59881039	59729788	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809046_59831849_59831901_59836386_59836534_59880905
ES_00034074	chr2	-	691	3	FSM	ENSMUSG00000026987.17	ENSMUST00000151756.2	693	3	0	2	0	-2	multi-exon	FALSE	canonical	3	3	junction_1	9.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCATCTCTTATTATTG	9150	False	NA	NA	False	ATTAAA	-16	NA	60040145	60036471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_60036905_60037138_60037308_60040056
ES_00034076	chr2	-	1277	9	FSM	ENSMUSG00000034848.18	ENSMUST00000131503.2	1276	9	0	-1	0	1	multi-exon	FALSE	canonical	2	5	junction_4	4.99843725578305	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTTAGATTTGTTTCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	66079754	66061458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738
ES_00034077	chr2	-	521	1	FSM	ENSMUSG00000083910.2	ENSMUST00000119332.2	482	1	-40	1	-40	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGTACACAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	67538155	67537634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_67537600_67538200
ES_00034079	chr2	-	2423	1	FSM	ENSMUSG00000082345.2	ENSMUST00000120658.2	433	1	-1931	-59	-1931	59	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAGAAAAGAAAATT	NA	False	NA	NA	False	AATAAA	-41	NA	69570064	69567641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69567600_69570100
ES_00034080	chr2	-	1837	9	FSM	ENSMUSG00000070883.4	ENSMUST00000094942.4	1844	9	7	0	7	0	multi-exon	TRUE	canonical	2	3	junction_5	1.58113883008419	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTTTGATTCTTTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	69619912	69588376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69588810_69592065_69592231_69602275_69602469_69606473_69606614_69608403_69608561_69611982_69612177_69612288_69612463_69617503_69617731_69619758
ES_00034081	chr2	-	2563	3	FSM	ENSMUSG00000051730.16	ENSMUST00000135459.2	316	3	-2293	46	-2293	-46	multi-exon	FALSE	canonical	3	445	junction_1	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCAGCTTAAAATCTA	6819	False	NA	-71	True	TTTAAA	-14	NA	69706687	69701607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69701661_69702075_69702126_69704227
ES_00034083	chr2	-	4432	21	NIC	ENSMUSG00000041997.17	novel	4271	22	NA	NA	-81	2	combination_of_known_junctions	FALSE	canonical	3	27	junction_18	66.7850844126142	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTGAAAATTACACTCAAA	NA	False	NA	NA	False	AATAAA	-24	NA	70656153	70542748	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70599205_70599275_70600347_70600420_70617220_70617340_70655536
ES_00034085	chr2	-	2105	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885913	70794904	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
ES_00034086	chr2	-	2952	15	NIC	ENSMUSG00000027010.17	novel	2392	17	NA	NA	49	420	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	23.2199992968764	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	-3	True	AATAAA	-17	NA	71159135	71104613	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777
ES_00034088	chr2	-	205	2	Antisense	novelGene_ENSMUSG00000027018.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	69	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTCTGAGTTCAAGGAC	NA	False	NA	19	True	NA	NA	NA	71225981	71183270	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_71183422_71225927
ES_00034090	chr2	-	2369	13	NIC	ENSMUSG00000056486.19	novel	4050	13	NA	NA	2	1	intron_retention	FALSE	canonical	1	7	junction_10	85.541412972509	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATAGCTTTTTTTCTTG	NA	False	NA	60	True	ATTAAA	-24	NA	73605688	73442678	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73509958_73510248_73537262_73537377_73540798_73540827_73546707_73546764_73551746_73551786_73605366
ES_00034092	chr2	-	1663	11	NIC	ENSMUSG00000027104.19	novel	3943	12	NA	NA	0	228	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	113.08054651442	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCTTCCCACTTCCATT	NA	False	NA	NA	False	AATAAA	-17	NA	73722894	73648937	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_73649493_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ES_00034093	chr2	-	2158	14	NNC	ENSMUSG00000027104.19	novel	2396	14	NA	NA	-2	228	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	86.518869577101	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCTTCCCACTTCCATT	NA	False	NA	NA	False	AATAAA	-17	NA	73722960	73648937	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693483_73693583_73704013_73704090_73710628_73710726_73722818
ES_00034098	chr2	-	2164	13	NNC	ENSMUSG00000009207.16	novel	3195	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_4	75.9822713240106	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409275	74351676	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362311_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ES_00034099	chr2	-	879	4	NNC	ENSMUSG00000002732.15	novel	860	4	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	14.7271480229163	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAATCTGACTCTTGGGT	NA	False	NA	-6	True	AATAAA	-33	NA	76503429	76493380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_76493697_76496020_76496152_76502040_76502193_76503149
ES_00034101	chr2	-	2643	8	FSM	ENSMUSG00000027016.18	ENSMUST00000111830.9	2642	8	10	-11	6	11	multi-exon	FALSE	canonical	1	2	junction_7	1.29362644830535	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCTGGTGTTTCCTGCC	NA	False	NA	NA	False	AATAAA	-18	NA	77349952	77240966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_77242485_77244297_77244400_77244916_77245096_77246073_77246320_77280494_77280658_77307078_77307190_77333883_77334027_77349771
ES_00034102	chr2	-	3297	21	NIC	ENSMUSG00000027014.15	novel	3090	20	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	75.0276449050615	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776673	77726109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77770645_77770707_77776493
ES_00034104	chr2	-	2027	10	FSM	ENSMUSG00000027082.16	ENSMUST00000111718.8	2027	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	79.8430559300364	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84305624	84263198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286_84304530_84305105
ES_00034105	chr2	-	1288	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307107	84263198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ES_00034107	chr2	-	6182	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111692.8	6170	19	0	-12	0	10	multi-exon	FALSE	canonical	3	20	junction_17	80.2536295860094	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCCAGTGATAGCCCAG	NA	False	NA	NA	False	TATAAA	-11	NA	84481089	84430404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
ES_00034108	chr2	-	4729	16	NIC	ENSMUSG00000034101.15	novel	5044	17	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_15	76.4250104496049	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84480828	84431126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84480749
ES_00034109	chr2	-	5389	18	NIC	ENSMUSG00000034101.15	novel	6170	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_16	89.2979926307936	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84481084	84431126	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84433245_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
ES_00034110	chr2	-	659	5	NNC	ENSMUSG00000076437.12	novel	747	4	NA	NA	0	57473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	958.585513921424	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAGAAAAGAAAAGAAA	412	False	NA	NA	False	NA	NA	NA	84500998	84442085	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_84442121_84499565_84499742_84500330_84500461_84500588_84500735_84500826
ES_00034111	chr2	-	655	5	NNC	ENSMUSG00000076437.12	novel	747	4	NA	NA	0	57473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	958.585513921424	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAGAAAAGAAAAGAAA	412	False	NA	NA	False	NA	NA	NA	84500998	84442085	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_84442122_84499570_84499742_84500330_84500461_84500588_84500735_84500826
ES_00034112	chr2	-	566	2	NNC	ENSMUSG00000097187.2	novel	726	2	NA	NA	-649	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGACACTCTCCTGCTTC	NA	False	NA	NA	False	AATAAA	-17	NA	84574648	84572516	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_84573045_84574610
ES_00034113	chr2	-	1672	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	95	-6	95	6	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCAGTTTGCCAGGTCT	NA	False	NA	-13	True	AATAAA	-25	NA	84652901	84641513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
ES_00034114	chr2	-	2046	3	FSM	ENSMUSG00000025839.4	ENSMUST00000026957.4	1861	3	0	-185	0	185	multi-exon	FALSE	canonical	3	27	junction_2	1.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGCCAAGCCAAATCTT	NA	False	NA	NA	False	NA	NA	NA	87322762	87319245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_87320426_87321167_87321750_87322478
ES_00034115	chr2	-	911	1	FSM	ENSMUSG00000083267.3	ENSMUST00000119555.3	892	1	142	-161	142	161	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAGAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	87354575	87353664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_87353700_87354600
ES_00034117	chr2	-	4476	8	ISM	ENSMUSG00000025314.17	ENSMUST00000111493.8	7124	22	21470	12	-19421	-12	3prime_fragment	FALSE	canonical	3	61	junction_3	5.72855361593241	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCAACACATTATGTCT	NA	False	NA	NA	False	TATAAA	-3	NA	90280210	90263244	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119
ES_00034118	chr2	-	590	2	Genic_Genomic	ENSMUSG00000080977.2	novel	317	1	NA	NA	-96	27067	multi-exon	FALSE	canonical	0	0	junction_1	0	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTCAAAAATAAGGAAACAT	1853	False	NA	NA	False	AAAACA	-31	NA	90635016	90607536	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_90607566_90634455
ES_00034119	chr2	-	960	8	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	76836	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	674.754074626074	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAGAAAGATG	NA	False	NA	NA	False	NA	NA	NA	90735046	90648141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_90648175_90724973_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ES_00034120	chr2	-	783	2	FSM	ENSMUSG00000005510.10	ENSMUST00000144683.2	783	2	0	0	0	0	multi-exon	FALSE	canonical	3	1877	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACATCTATTACACAAAG	NA	False	NA	NA	False	AATAGA	-18	NA	90735046	90734168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90734833_90734927
ES_00034121	chr2	-	1569	3	ISM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	-132	-21	-132	21	intron_retention	FALSE	canonical	3	356	junction_2	10	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGGGGAGTGATCAGAAT	NA	False	NA	20	True	AATAAA	-41	NA	90748521	90741035	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_90741664_90744327_90744520_90747772
ES_00034122	chr2	-	2248	9	NIC	ENSMUSG00000002105.16	novel	2469	10	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	1	5	junction_5	17.0105665690476	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	4286	False	NA	0	True	AATAAA	-15	NA	90900643	90892135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895926_90896046_90896357_90896472_90898775_90899085_90900499
ES_00034123	chr2	-	5927	32	NIC	ENSMUSG00000040687.17	novel	5977	35	NA	NA	1	0	intron_retention	FALSE	canonical	1	2	junction_2	5.18181403276259	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCTCCTGTGCACTCC	NA	False	NA	-1	True	AATAAA	-15	NA	91013370	90967704	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_90968747_90969053_90969101_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988761_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ES_00034124	chr2	-	1486	6	ISM	ENSMUSG00000040687.17	ENSMUST00000066420.12	3753	20	147	14159	-11	2085	5prime_fragment	FALSE	canonical	2	8	junction_4	4.44522215417857	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGACTTTATTGGGCAG	NA	False	NA	NA	False	ATTAAA	-19	NA	91013245	91005896	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ES_00034125	chr2	-	2690	9	FSM	ENSMUSG00000040591.19	ENSMUST00000064652.14	2896	9	0	206	0	-206	multi-exon	TRUE	canonical	2	3	junction_1	37.0082338811243	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATTAAGGGAAGGGGT	NA	False	NA	NA	False	NA	NA	NA	91274967	91105618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91107480_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
ES_00034126	chr2	-	394	4	FSM	ENSMUSG00000040591.19	ENSMUST00000145573.8	732	4	0	338	0	-338	multi-exon	FALSE	canonical	3	90	junction_1	18.4932420089069	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATGTCCAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	91274988	91135093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91135179_91214073_91214205_91252210_91252314_91274913
ES_00034128	chr2	-	1912	13	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	454	-2	435	2	3prime_fragment	FALSE	canonical	2	10	junction_12	3.05845821725043	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGTGTGCCCAATGCTG	NA	False	NA	NA	False	AATAAA	-17	NA	91466305	91455662	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122
ES_00034129	chr2	-	3519	17	NNC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	0	26196	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	66.588287258346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACACAGCACCATAGTGTA	NA	False	NA	NA	False	NA	NA	NA	91540864	91478766	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_91478794_91504964_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ES_00034131	chr2	-	3613	17	FSM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	0	-9	0	8	multi-exon	FALSE	canonical	3	29	junction_7	76.9829526583646	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAAATGTCTTGACAGCT	NA	False	NA	8	True	AATAAA	-28	NA	91540864	91504954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ES_00034136	chr2	-	208	1	Intergenic	novelGene_2311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAATTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	92037879	92037671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_92037700_92037900
ES_00034137	chr2	-	2377	15	FSM	ENSMUSG00000040434.17	ENSMUST00000176774.8	2377	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	41.8854731039636	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201331	92195390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200907_92201009_92201083_92201239_92201325
ES_00034141	chr2	-	510	3	FSM	ENSMUSG00000075028.13	ENSMUST00000130441.2	3167	3	3	2654	3	0	multi-exon	FALSE	canonical	2	5	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGTCCCCTGTACCAT	NA	False	NA	NA	False	NA	NA	NA	92844252	92842971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_92843235_92843657_92843762_92844109
ES_00034142	chr2	-	3669	11	NNC	ENSMUSG00000027217.14	novel	3751	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	28	junction_1	10.0776981498753	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTCTCATTGGTTGT	NA	False	NA	-11	True	TATAAA	-16	NA	93164832	93032104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_93033454_93033535_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
ES_00034145	chr2	-	1369	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	49.5186708770752	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATCTGAACATGTTTGT	8875	False	NA	77	True	AATACA	-21	NA	93841075	93810897	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
ES_00034146	chr2	-	1337	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-37	-3	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATCTGAACATGTTTGT	8761	False	NA	77	True	AATACA	-21	NA	93841189	93810897	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ES_00034147	chr2	-	1875	12	NNC	ENSMUSG00000027195.11	novel	1902	11	NA	NA	-6	32021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.059297996614	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCGTGTAGACAAAGATATT	NA	False	NA	NA	False	NA	NA	NA	93988260	93831012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_93831040_93863038_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ES_00034150	chr2	-	218	2	FSM	ENSMUSG00000048058.18	ENSMUST00000127888.2	2337	2	155	1964	155	-1964	multi-exon	FALSE	canonical	1	1	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGCTGCCCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	101968309	101943877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_101944025_101968238
ES_00034151	chr2	-	200	1	Intergenic	novelGene_2316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	102031704	102031504	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_102031500_102031700
ES_00034152	chr2	-	4121	28	FSM	ENSMUSG00000027185.16	ENSMUST00000143017.8	4107	28	0	-14	0	10	multi-exon	FALSE	canonical	2	8	junction_15	70.0248828986219	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCTATAAAATCGGTTAT	NA	False	NA	1	True	AATAAA	-30	NA	103591542	103551590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565262_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
ES_00034157	chr2	-	281	1	FSM	ENSMUSG00000081010.4	ENSMUST00000118421.2	474	1	261	-68	261	68	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTGGAGCAAATTGTTATC	NA	False	NA	NA	False	NA	NA	NA	103649560	103649279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_103649300_103649600
ES_00034158	chr2	-	2674	6	FSM	ENSMUSG00000027171.11	ENSMUST00000028593.11	2872	6	136	62	136	-62	multi-exon	FALSE	canonical	1	4	junction_1	3.61109401705356	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTCAGTGAAAAACCCCAT	NA	False	NA	NA	False	TATAAA	-30	NA	104680085	104661147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_104663156_104669666_104669800_104672399_104672449_104675334_104675499_104679420_104679546_104679890
ES_00034159	chr2	-	222	1	Intergenic	novelGene_2325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAGAATATAAGTT	NA	False	NA	NA	False	NA	NA	NA	104768056	104767834	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_104767800_104768100
ES_00034160	chr2	-	2259	7	NNC	ENSMUSG00000005973.7	novel	2720	6	NA	NA	-149	37736	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	618.57104595098	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTGCTGAAGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	105229813	105178899	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_105178927_105217272_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ES_00034162	chr2	-	5601	3	FSM	ENSMUSG00000027122.16	ENSMUST00000146961.2	790	3	-2147	-2664	-1033	0	multi-exon	FALSE	canonical	3	227	junction_1	19	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106801769	106792871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_106795992_106797444_106797573_106799416
ES_00034164	chr2	-	550	1	FSM	ENSMUSG00000094074.2	ENSMUST00000118137.2	939	1	187	202	187	-202	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTGATCTTTTTTGTGC	NA	False	NA	NA	False	AATGAA	-25	NA	111339669	111339119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_111339100_111339700
ES_00034165	chr2	-	227	1	FSM	ENSMUSG00000081541.2	ENSMUST00000121023.2	301	1	67	7	67	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAGATCTCAACTAATGA	NA	False	NA	NA	False	NA	NA	NA	112219775	112219548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_112219500_112219800
ES_00034168	chr2	-	2679	9	FSM	ENSMUSG00000040383.17	ENSMUST00000131785.8	3112	9	0	433	0	-433	multi-exon	FALSE	canonical	3	222	junction_1	25.6307920283397	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGTTAGAAAACCAAGTT	7810	False	NA	NA	False	NA	NA	NA	114005819	113983656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
ES_00034169	chr2	-	2789	7	FSM	ENSMUSG00000057147.14	ENSMUST00000150447.8	2590	7	12	-211	1	211	multi-exon	FALSE	canonical	3	190	junction_1	15.088627063675	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTACTTTGTGGCCTCGTC	NA	False	NA	NA	False	NA	NA	NA	114485433	114351496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
ES_00034170	chr2	-	2831	12	FSM	ENSMUSG00000027210.21	ENSMUST00000028639.13	2831	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	18.227216050694	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGTGTTTTTTAATG	NA	False	NA	4	True	AATAAA	-25	NA	115895528	115693544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
ES_00034171	chr2	-	5032	17	NNC	ENSMUSG00000027347.19	novel	5104	17	NA	NA	76	3	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_16	12.0141518115096	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAAAGTCGTGTGCTTCT	NA	False	NA	-4	True	CATAAA	-19	NA	117173282	117110470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234_117124352_117125189_117125364_117128942_117129097_117130923_117131056_117132441_117132501_117136254_117136365_117168756_117168942_117173155
ES_00034174	chr2	-	219	2	Intergenic	novelGene_2336	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCTAACCAAACCAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	118765867	118764599	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_118764627_118765675
ES_00034175	chr2	-	747	3	FSM	ENSMUSG00000039983.14	ENSMUST00000110834.8	828	3	5	76	5	-5	multi-exon	FALSE	canonical	3	12	junction_2	21.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTATCCTCTAATCTTC	NA	False	NA	NA	False	NA	NA	NA	118859869	118852290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_118852707_118857618_118857869_118859788
ES_00034176	chr2	-	636	2	FSM	ENSMUSG00000070730.12	ENSMUST00000139519.2	626	2	0	-10	0	0	multi-exon	FALSE	canonical	3	266	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGATGCTGCCATACT	NA	False	NA	NA	False	NA	NA	NA	118987445	118984534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_118984564_118986838
ES_00034177	chr2	-	2312	11	FSM	ENSMUSG00000027297.16	ENSMUST00000134295.2	2299	11	0	-13	0	3	multi-exon	FALSE	canonical	1	2	junction_4	8.63712915267567	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGAGTGAATGTGGAAG	NA	False	NA	-1	True	NA	NA	NA	119589000	119581797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119582416_119582546_119583080_119583175_119583269_119583406_119583505_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588727
ES_00034178	chr2	-	4725	23	FSM	ENSMUSG00000034032.16	ENSMUST00000139311.8	4714	23	0	-11	0	11	multi-exon	FALSE	canonical	3	111	junction_22	84.1204002340526	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGGAGTGGACTTTACC	482	False	NA	NA	False	NA	NA	NA	119618000	119597328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
ES_00034179	chr2	-	500	1	FSM	ENSMUSG00000081056.2	ENSMUST00000120952.2	335	1	-70	-95	-70	95	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATTAGTGGTCATAAACA	NA	False	NA	NA	False	NA	NA	NA	119708954	119708454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119708500_119709000
ES_00034180	chr2	-	1679	5	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	8865	9	8865	0	3prime_fragment	FALSE	canonical	2	10	junction_2	2.54950975679639	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	3613	False	NA	NA	False	AATAAA	-22	NA	120133993	120130446	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547
ES_00034181	chr2	-	2857	21	NNC	ENSMUSG00000033808.17	novel	2897	20	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	140.435251984678	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTCATTTATTTC	NA	False	NA	NA	False	TATAAA	-17	NA	120234550	120185789	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120185973_120185995_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204964_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00034183	chr2	-	2897	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	1	intron_retention	TRUE	non_canonical	0	0	junction_1	132.468147114693	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTCTCTCTCATTTATT	NA	False	NA	NA	False	TATAAA	-15	NA	120234594	120185791	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120185973_120185994_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00034184	chr2	-	3018	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	170.555350253224	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234546	120185792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120187020_120190014_120190046_120190519_120190573_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120218869_120219021_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00034188	chr2	-	1852	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	0	-4	0	4	multi-exon	FALSE	canonical	1	2	junction_5	68.2800117164606	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGAAGTAATGTTAATC	NA	False	NA	NA	False	AATAAA	-19	NA	120439796	120434714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439669
ES_00034189	chr2	-	209	2	Antisense	novelGene_ENSMUSG00000033705.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	102	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCACCTTAGAGCAGGGC	9835	False	NA	NA	False	NA	NA	NA	120525060	120512719	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_120512881_120525012
ES_00034190	chr2	-	4170	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	-6	2	combination_of_known_junctions	FALSE	canonical	3	6	junction_25	19.309123482361	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCTGTTCTCCCTGCT	6108	False	NA	NA	False	AATAAA	-17	NA	120562005	120548664	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560949_120560987_120561182_120561674_120561892
ES_00034191	chr2	-	4292	28	NIC	ENSMUSG00000027284.17	novel	8046	41	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	18.4226406898219	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGGCTGTTCTCCCTGC	6108	False	NA	NA	False	AATAAA	-16	NA	120562005	120548665	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553137_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560987_120561182_120561674_120561892
ES_00034192	chr2	-	1550	6	FSM	ENSMUSG00000027272.6	ENSMUST00000135891.2	710	6	0	-840	0	840	multi-exon	FALSE	canonical	3	79	junction_3	12.1918005233025	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATGTGGTAGAACACAT	NA	False	NA	NA	False	NA	NA	NA	120720330	120702690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256
ES_00034195	chr2	-	5171	30	FSM	ENSMUSG00000033526.17	ENSMUST00000110626.8	5171	30	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	18.3018682892629	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAGATGCTGTAATAGAG	NA	False	NA	NA	False	GGGGCT	-9	NA	121181466	121141373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397
ES_00034197	chr2	-	278	1	ISM	ENSMUSG00000033526.17	ENSMUST00000132617.8	3910	5	6564	1758	4045	-1758	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACAGTGTACTTACATG	NA	False	NA	NA	False	NA	NA	NA	121160940	121160662	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_121160700_121160900
ES_00034198	chr2	-	3428	26	FSM	ENSMUSG00000033526.17	ENSMUST00000134644.8	3438	26	13	-3	8	3	multi-exon	FALSE	canonical	2	4	junction_25	24.9560894372496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGAGTCCAGGAATAA	NA	False	NA	NA	False	NA	NA	NA	121185545	121162550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121162873_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
ES_00034201	chr2	-	1418	10	FSM	ENSMUSG00000033526.17	ENSMUST00000131661.8	1442	10	11	13	8	-13	multi-exon	FALSE	canonical	2	4	junction_9	33.734255586866	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAGTTTTAAAATGA	NA	False	NA	NA	False	NA	NA	NA	121185545	121177541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
ES_00034202	chr2	-	1206	8	FSM	ENSMUSG00000033526.17	ENSMUST00000140764.8	1214	8	8	0	8	0	multi-exon	FALSE	canonical	2	4	junction_7	36.5619407335563	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATCAGTCTCTGTAT	NA	False	NA	NA	False	AATACA	-35	NA	121185545	121178672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
ES_00034204	chr2	-	312	1	FSM	ENSMUSG00000082651.2	ENSMUST00000118847.2	247	1	-89	24	-89	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTCAGCTACAAATGTT	9872	False	NA	NA	False	AAGAAA	-32	NA	121231961	121231649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121231600_121232000
ES_00034205	chr2	-	407	3	FSM	ENSMUSG00000027246.13	ENSMUST00000153866.2	407	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	13.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAGCAGGACTTTGAGAC	NA	False	NA	NA	False	AATACA	-33	NA	121271632	121270460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121270501_121270596_121270908_121271576
ES_00034206	chr2	-	1739	12	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	59355	0	59355	0	3prime_fragment	FALSE	canonical	2	2	junction_11	37.4944624010507	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTGTTGCCAGACTTT	NA	False	NA	0	True	AATAAA	-20	NA	121957315	121950588	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581_121956675_121957116
ES_00034207	chr2	-	834	1	FSM	ENSMUSG00000079966.3	ENSMUST00000116082.3	735	1	52	-151	52	151	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGTTGATGCTTAAGTAC	NA	False	NA	NA	False	NA	NA	NA	122045783	122044949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122044900_122045800
ES_00034209	chr2	-	2337	9	FSM	ENSMUSG00000027199.15	ENSMUST00000028624.9	2389	9	47	5	47	-5	multi-exon	FALSE	canonical	2	6	junction_3	2.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGAGTTTGATTTCTG	NA	False	NA	NA	False	AATAAA	-21	NA	122441737	122424952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
ES_00034210	chr2	-	4338	3	ISM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	15581	6	15581	-6	3prime_fragment	FALSE	canonical	2	12	junction_2	2.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAATTGTTTTCTATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	122528978	122523158	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_122527254_122527917_122528053_122528870
ES_00034214	chr2	-	5768	28	FSM	ENSMUSG00000068394.5	ENSMUST00000089776.3	5768	28	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_22	10.571073713266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCATGACTTATTTT	NA	False	NA	0	True	AATAAA	-18	NA	125467033	125405007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456352_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
ES_00034215	chr2	-	5928	28	NNC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	-166	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	9.53097613955882	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCATGACTTATTTT	NA	False	NA	0	True	AATAAA	-18	NA	125467199	125405007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_125406315_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456349_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
ES_00034217	chr2	-	4127	10	FSM	ENSMUSG00000027361.16	ENSMUST00000103227.8	2751	10	-48	-1328	0	-145	multi-exon	FALSE	canonical	3	17	junction_9	168.845754725693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATCTAAAGGAGATGAGA	NA	False	NA	NA	False	NA	NA	NA	126517512	126469506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
ES_00034218	chr2	-	1324	8	ISM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	27	10108	11	0	5prime_fragment	FALSE	canonical	3	55	junction_2	122.412484357318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517395	126480940	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ES_00034221	chr2	-	213	1	Intergenic	novelGene_2359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	278	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACTTTTATTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	126537164	126536951	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_126537000_126537200
ES_00034225	chr2	-	3876	16	NIC	ENSMUSG00000027366.13	novel	5616	15	NA	NA	-10	-1804	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	7.10742960257473	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAATAAGATGATATCTC	8269	False	NA	NA	False	ATTAAA	-26	NA	126775165	126734114	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755219_126755274_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
ES_00034227	chr2	-	2290	20	NNC	ENSMUSG00000027378.17	novel	2296	20	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	17.789940822269	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTTATATCTAAATTTTT	2797	False	NA	3	True	AATAAA	-19	NA	127630811	127582652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610176_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ES_00034228	chr2	-	3395	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-19	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	178.998836122846	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673804	127643041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ES_00034230	chr2	-	769	4	FSM	ENSMUSG00000014355.11	ENSMUST00000151171.2	836	4	67	0	67	0	multi-exon	FALSE	canonical	3	381	junction_3	36.5057073163453	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCAGTGGCTACAAGG	2830	False	NA	NA	False	CATAAA	-44	NA	128464698	128459492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_128459673_128461173_128461270_128461813_128461901_128464292
ES_00034234	chr2	-	3159	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	-58	-1158	-58	1158	mono-exon	FALSE	NA	NA	NA	NA	NA	749	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTAAAAAATTTATT	NA	False	NA	NA	False	NA	NA	NA	129041172	129038013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_129038000_129041200
ES_00034235	chr2	-	475	2	NNC	ENSMUSG00000081888.2	novel	682	2	NA	NA	68	-139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	391	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAGCAGCGGGAAGCCA	NA	False	NA	NA	False	AAAACA	-32	NA	129221248	129220329	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_129220603_129221046
ES_00034237	chr2	-	556	2	Genic_Genomic	ENSMUSG00000083483.4	novel	447	1	NA	NA	-28	24473	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAGAAAAAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	130227277	130202329	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_130202376_130226767
ES_00034238	chr2	-	3735	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	0	-4	0	4	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTTATTTCTCATTAGA	NA	False	NA	NA	False	AATAAA	-19	NA	130471958	130431917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
ES_00034239	chr2	-	735	2	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	34886	-1328	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130437061	130433249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130433935_130437011
ES_00034240	chr2	-	3194	21	NNC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	36.6080592219801	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539382	130526032	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538410_130538574_130539278
ES_00034242	chr2	-	3610	37	FSM	ENSMUSG00000027309.19	ENSMUST00000119422.8	3815	37	205	0	205	0	multi-exon	FALSE	canonical	1	2	junction_36	16.0023869747263	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGGGGCTGTCTCTGTCC	NA	False	NA	NA	False	AATGAA	-35	NA	130681402	130551049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130551239_130551857_130551952_130552731_130552798_130554179_130554383_130554871_130554947_130555316_130555424_130559180_130559268_130561759_130561896_130569067_130569106_130572708_130572835_130578386_130578546_130579298_130579388_130580900_130581019_130581290_130581390_130582320_130582410_130583736_130583884_130590604_130590709_130606372_130606461_130607607_130607659_130609529_130609601_130612591_130612710_130616978_130617025_130617646_130617692_130619124_130619202_130620336_130620425_130626343_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681319
ES_00034245	chr2	-	1966	7	FSM	ENSMUSG00000027309.19	ENSMUST00000110243.8	1984	7	13	5	0	-5	multi-exon	FALSE	canonical	3	61	junction_6	9.03081145609604	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGAAAATAGATATTT	NA	False	NA	NA	False	NA	NA	NA	130682052	130647600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
ES_00034247	chr2	-	1221	4	FSM	ENSMUSG00000027316.16	ENSMUST00000156509.2	1125	4	-91	-5	-37	-2	multi-exon	FALSE	canonical	2	5	junction_1	6.48074069840786	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTTTTCTGTCATTT	NA	False	NA	0	True	AATAAA	-19	NA	130883468	130881553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130882246_130882318_130882396_130882935_130883071_130883151
ES_00034249	chr2	-	1879	7	FSM	ENSMUSG00000027329.10	ENSMUST00000110218.9	2600	7	0	721	0	574	multi-exon	TRUE	canonical	0	0	junction_5	1.24721912892465	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGTGCCTGCCTTCTC	8032	False	NA	NA	False	ATTAAA	-18	NA	131017121	131012956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_131013711_131013821_131013946_131014123_131014179_131014289_131014330_131014542_131014700_131015115_131015228_131016484
ES_00034250	chr2	-	4653	12	NNC	ENSMUSG00000027339.16	novel	8233	11	NA	NA	113	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.4229858935924	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCCTGTGGATCTGCTT	NA	False	NA	0	True	AATAAA	-15	NA	131871808	131834771	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_131836034_131836063_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
ES_00034251	chr2	-	6335	15	NIC	ENSMUSG00000027340.16	novel	6364	16	NA	NA	-59	1	intron_retention	FALSE	canonical	3	13	junction_10	41.8786512267459	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTGTCATTTGCCTCT	7540	False	NA	0	True	AATAAA	-18	NA	131987087	131894414	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
ES_00034253	chr2	-	2059	19	NIC	ENSMUSG00000027346.16	novel	3703	20	NA	NA	10	-1443	combination_of_known_junctions	FALSE	canonical	3	23	junction_15	23.8892118841213	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACCGCTGCCCTCATGT	NA	False	NA	NA	False	NA	NA	NA	132420043	132372445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414178_132419987
ES_00034255	chr2	-	2132	13	FSM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_3	26.3739138796905	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGACTGCTTGTCTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	139908705	139675394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ES_00034257	chr2	-	510	2	Genic_Genomic	ENSMUSG00000080006.5	novel	438	1	NA	NA	0	55852	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	139915389	139859099	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_139859136_139914915
ES_00034259	chr2	-	1537	1	Intergenic	novelGene_2379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTACTTTATTTAAATGCA	NA	False	NA	NA	False	NA	NA	NA	143998298	143996761	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_143996800_143998300
ES_00034262	chr2	-	308	1	FSM	ENSMUSG00000082436.2	ENSMUST00000122145.2	308	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTCCACAGTGCTCTCC	NA	False	NA	NA	False	NA	NA	NA	144103461	144103153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_144103200_144103500
ES_00034263	chr2	-	901	1	FSM	ENSMUSG00000077714.3	ENSMUST00000104526.3	238	1	31	-694	31	694	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCATATTTTTCTACAT	NA	False	NA	NA	False	NA	NA	NA	144108105	144107204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_144107200_144108100
ES_00034266	chr2	-	3495	1	FSM	ENSMUSG00000074743.5	ENSMUST00000099270.5	3723	1	198	30	198	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAGATGACAGTG	NA	False	NA	NA	False	NA	NA	NA	148249910	148246415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_148246400_148249900
ES_00034267	chr2	-	4074	8	ISM	ENSMUSG00000027438.15	ENSMUST00000028926.13	4412	11	25201	0	25125	0	3prime_fragment	FALSE	canonical	1	1	junction_7	5.19418827505653	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGACTGTTTTTTTGG	NA	False	NA	0	True	AATAAA	-18	NA	148549186	148535904	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148549078
ES_00034269	chr2	-	650	4	FSM	ENSMUSG00000063364.11	ENSMUST00000051153.6	650	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.73053390247253	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTGTTTTTCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	150204685	150152854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150153139_150186228_150186290_150186499_150186627_150204507
ES_00034270	chr2	-	2922	4	FSM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.29983164553722	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150293406	150249060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150251710_150252860_150252922_150253130_150253258_150293321
ES_00034271	chr2	-	3346	2	FSM	ENSMUSG00000082740.2	ENSMUST00000117906.2	678	2	-47	-2621	-47	2621	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTAATGTGATTAT	NA	False	NA	NA	False	AATAAA	-39	NA	150312132	150308709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150311583_150311659
ES_00034272	chr2	-	1121	1	FSM	ENSMUSG00000083325.4	ENSMUST00000121441.2	1380	1	235	24	235	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAATAATATTTTATAC	NA	False	NA	NA	False	AATAGA	-14	NA	150342530	150341409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150341400_150342500
ES_00034273	chr2	-	547	3	FSM	ENSMUSG00000027452.12	ENSMUST00000154328.8	547	3	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_2	19	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTCAGGTAAGCACAGTG	5054	False	NA	NA	False	AAAAAG	-27	NA	150480035	150470421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150470552_150471665_150471814_150479766
ES_00034274	chr2	-	4764	2	NIC	ENSMUSG00000086563.2	novel	768	3	NA	NA	5	2831	intron_retention	FALSE	canonical	3	31	junction_1	0	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATTAGGTTATTT	NA	False	NA	NA	False	NA	NA	NA	150548791	150543624	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_150548201_150548603
ES_00034276	chr2	-	380	3	FSM	ENSMUSG00000053916.5	ENSMUST00000140124.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGGTGCTGACAATAGG	NA	False	NA	NA	False	NA	NA	NA	150881282	150872676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_150872837_150880535_150880630_150881156
ES_00034277	chr2	-	2931	3	FSM	ENSMUSG00000032869.16	ENSMUST00000125977.8	2956	3	25	0	25	0	multi-exon	FALSE	canonical	3	333	junction_2	13	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACCATGCAGAGCAGAGT	725	False	NA	NA	False	NA	NA	NA	151562890	151557981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_151560606_151561404_151561564_151562742
ES_00034278	chr2	-	394	1	Intergenic	novelGene_2389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGCTGAAGAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	152270574	152270180	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_152270200_152270600
ES_00034279	chr2	-	1047	3	FSM	ENSMUSG00000027472.15	ENSMUST00000151392.2	458	3	0	-589	0	9	multi-exon	FALSE	canonical	3	235	junction_2	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCACCCACCTCATTCTGT	NA	False	NA	NA	False	AATAAA	-30	NA	152854410	152850800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152851657_152852177_152852259_152854300
ES_00034281	chr2	-	2002	2	NNC	ENSMUSG00000073236.5	novel	1898	2	NA	NA	72	-327	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTGCTAAAAAATTGCAT	9347	False	NA	NA	False	NA	NA	NA	153187658	153183403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153184785_153187037
ES_00034282	chr2	-	6004	11	NNC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	8854	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_10	27.7676070268938	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGAGCTTCGACTATGT	NA	False	NA	NA	False	AATAAA	-19	NA	153363037	153249381	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153362884
ES_00034283	chr2	-	201	1	Genic_Genomic	ENSMUSG00000061411.13	novel	NA	NA	NA	NA	-8473	45	mono-exon	FALSE	NA	NA	NA	NA	NA	554	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGGTTATCTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	153295974	153295773	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_153295800_153296000
ES_00034284	chr2	-	2128	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	12	938	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	73.1482512891912	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTCCGTTAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	153474689	153459815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153460241_153460344_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471164_153474513
ES_00034285	chr2	-	1035	8	NNC	ENSMUSG00000056941.18	novel	3210	9	NA	NA	53	-130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	81.816868676331	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTTTGTCTCTTTG	NA	False	NA	-4	True	NA	NA	NA	153474598	153460883	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464691_153464749_153470384_153470488_153471112_153471164_153474513
ES_00034286	chr2	-	694	6	FSM	ENSMUSG00000027487.12	ENSMUST00000109730.3	1227	6	0	533	0	-533	multi-exon	FALSE	canonical	1	2	junction_1	32.8060969943088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAATAATTAGAAATAAAAAC	5668	False	NA	NA	False	NA	NA	NA	154214651	154203702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_154203786_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
ES_00034288	chr2	-	1393	10	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	45964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4169.46393510879	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTGGAAGTGCTCAGGC	3785	False	NA	NA	False	NA	NA	NA	154734702	154667365	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_154667395_154714354_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ES_00034290	chr2	-	701	1	FSM	ENSMUSG00000082596.2	ENSMUST00000119431.2	629	1	-47	-25	-47	25	mono-exon	FALSE	NA	NA	NA	NA	NA	497	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTCTGGTCCCATCTCC	9566	False	NA	NA	False	NA	NA	NA	155041227	155040526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155040500_155041200
ES_00034291	chr2	-	1641	13	NNC	ENSMUSG00000038383.17	novel	1636	12	NA	NA	0	3625	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.5366849010829	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACAGCAGGAAAGATCAT	NA	False	NA	NA	False	GATAAA	-22	NA	155199339	155116537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155116556_155120164_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ES_00034292	chr2	-	4101	15	NNC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	0	6116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	41.8562286589585	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTCCTGGCTACATAAGA	NA	False	NA	NA	False	NA	NA	NA	155315726	155226459	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155226487_155232566_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
ES_00034294	chr2	-	3930	13	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_12	42.8027614633552	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGTATGTTATTGGA	NA	False	NA	-19	True	AATAAA	-17	NA	155315698	155232584	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155315559
ES_00034296	chr2	-	2410	14	ISM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	8271	0	377	0	3prime_fragment	FALSE	canonical	2	7	junction_10	4.74933816628712	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTTGATTTCTGTTT	8978	False	NA	NA	False	ATTAAA	-24	NA	155348497	155332298	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245
ES_00034299	chr2	-	1152	8	FSM	ENSMUSG00000038324.14	ENSMUST00000130755.2	1516	8	0	364	0	-364	multi-exon	FALSE	canonical	3	309	junction_1	49.9362859357925	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTTTTTTCTGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	155534302	155495387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
ES_00034301	chr2	-	1564	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	5495	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	81.7823903722556	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTCCTGATCCTTGA	3221	False	NA	-12	True	AATAAA	-7	NA	155976234	155965568	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976098
ES_00034304	chr2	-	707	1	FSM	ENSMUSG00000082196.4	ENSMUST00000120090.2	592	1	134	-249	134	249	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTCTTCTAGCTGGCTA	NA	False	NA	NA	False	AGTAAA	-29	NA	156632189	156631482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156631500_156632200
ES_00034305	chr2	-	580	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	2	30827	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	70.4335778509717	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAATGCCTGTCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	156681810	156644141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_156644337_156679742_156679834_156680337_156680457_156681635
ES_00034306	chr2	-	223	1	FSM	ENSMUSG00000102323.2	ENSMUST00000193136.2	3346	1	2938	185	2938	-185	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCTCACTGGTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	156688697	156688474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156688500_156688700
ES_00034307	chr2	-	1196	3	FSM	ENSMUSG00000085741.9	ENSMUST00000176134.2	1196	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	9	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAACTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	156704865	156694349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156694611_156695350_156695939_156704518
ES_00034308	chr2	-	2001	1	FSM	ENSMUSG00000085741.9	ENSMUST00000187327.2	2001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCAAAAGGAAAATAAAACA	NA	False	NA	NA	False	NA	NA	NA	156698036	156696035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156696000_156698000
ES_00034309	chr2	-	1964	10	NIC	ENSMUSG00000027635.16	novel	2080	11	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	69.0825235622469	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGAAGTGTACACTATG	8179	False	NA	-17	True	AATAAA	-19	NA	156848950	156837195	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
ES_00034311	chr2	-	4338	11	ISM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	26156	0	14027	0	3prime_fragment	TRUE	canonical	3	54	junction_1	10.9288608738514	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTACTTTTTACTGCT	7522	False	NA	NA	False	NA	NA	NA	157020276	156987812	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138
ES_00034313	chr2	-	2299	15	ISM	ENSMUSG00000027641.14	ENSMUST00000154721.8	2715	16	22	2814	0	-2814	5prime_fragment	FALSE	canonical	3	55	junction_2	35.4011991034087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATAACTCTGTATTTTT	NA	False	NA	NA	False	CATAAA	-34	NA	157046432	157011711	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ES_00034314	chr2	-	312	3	Intergenic	novelGene_2402	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCTCTTCCTAA	NA	False	NA	NA	False	NA	NA	NA	157206461	157203077	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_157203261_157205546_157205655_157206440
ES_00034315	chr2	-	781	2	NNC	ENSMUSG00000087547.2	novel	629	2	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8720	False	NA	-13	True	NA	NA	NA	157439227	157437502	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_157438071_157439014
ES_00034317	chr2	-	205	1	Intergenic	novelGene_2408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGTACAATGGCTGGAT	NA	False	NA	NA	False	NA	NA	NA	157794743	157794538	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_157794500_157794700
ES_00034318	chr2	-	3154	3	ISM	ENSMUSG00000085385.8	ENSMUST00000141809.8	1553	6	1582	-1606	-1464	-1	3prime_fragment	FALSE	canonical	3	94	junction_2	2	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGTCTCGTGAGTTCT	9941	False	NA	1	True	NA	NA	NA	158201848	158195620	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_158197962_158199117_158199184_158201101
ES_00034319	chr2	-	2893	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	105	-2065	0	0	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTCTCGTGAGTTCTT	8394	False	NA	2	True	NA	NA	NA	158203395	158195619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
ES_00034323	chr2	-	1727	11	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	0	35528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.952253886333	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACACACCAAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	163487051	163429663	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_163429692_163467175_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ES_00034325	chr2	-	3132	8	FSM	ENSMUSG00000039804.16	ENSMUST00000122070.2	3117	8	1	-16	0	10	multi-exon	TRUE	canonical	3	14	junction_1	35.3784207259344	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTCTTGGGTGTGTCTGC	3062	False	NA	4	True	ATTAAA	-25	NA	164876707	164842266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164844092_164844535_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
ES_00034327	chr2	-	1934	5	ISM	ENSMUSG00000053166.15	ENSMUST00000138643.2	2521	11	46021	-820	46021	0	3prime_fragment	FALSE	canonical	3	18	junction_2	1.92028643696715	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTATCCTTGTGGTTACT	NA	False	NA	-5	True	NA	NA	NA	164977358	164953426	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103
ES_00034328	chr2	-	2243	7	ISM	ENSMUSG00000053166.15	ENSMUST00000138643.2	2521	11	37583	-820	37583	0	3prime_fragment	FALSE	canonical	1	4	junction_5	6.89000886953146	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTATCCTTGTGGTTACT	NA	False	NA	-5	True	NA	NA	NA	164985796	164953426	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164984035_164984228_164985561
ES_00034329	chr2	-	1991	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_9	78.2020175926143	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5774	False	NA	-34	True	AATAAA	-18	NA	165129675	165118473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
ES_00034330	chr2	-	862	6	FSM	ENSMUSG00000017664.17	ENSMUST00000133961.8	862	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	81.4798134509401	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCCTCTGGGGAGGACT	5693	False	NA	NA	False	NA	NA	NA	165129756	165122705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129703
ES_00034333	chr2	-	842	2	FSM	ENSMUSG00000039725.7	ENSMUST00000125497.2	842	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCAAAGCATGGGTTGT	NA	False	NA	NA	False	NA	NA	NA	165335036	165333097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165333870_165334966
ES_00034334	chr2	-	356	1	FSM	ENSMUSG00000081758.2	ENSMUST00000118200.2	361	1	56	-51	56	51	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTCTAGGGCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	165508721	165508365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165508400_165508700
ES_00034335	chr2	-	4227	19	NIC	ENSMUSG00000039671.19	novel	5072	22	NA	NA	36	1	combination_of_known_splicesites	FALSE	canonical	3	46	junction_18	177.154610927403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165700057	165626070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165699974
ES_00034336	chr2	-	5073	22	FSM	ENSMUSG00000039671.19	ENSMUST00000109266.11	5072	22	0	-1	0	1	multi-exon	FALSE	canonical	3	8	junction_11	194.668949758301	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165700093	165626070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165699974
ES_00034337	chr2	-	4214	19	NIC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	3	1	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	168.735346871812	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165717694	165626070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624
ES_00034338	chr2	-	5094	23	FSM	ENSMUSG00000039671.19	ENSMUST00000177633.8	5093	23	0	-1	0	1	multi-exon	FALSE	canonical	3	8	junction_11	189.66739047149	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165726671	165626070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
ES_00034339	chr2	-	4709	22	NNC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	-883	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_19	188.063722495384	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165727677	165626070	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165694787_165694800_165717624_165717696_165726527_165726759_165727426
ES_00034340	chr2	-	5727	20	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	-891	1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_19	177.504336492617	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTTTCTTCATGGCTGA	NA	False	NA	1	True	ATTAAA	-22	NA	165727685	165626070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726098
ES_00034341	chr2	-	5422	24	FSM	ENSMUSG00000039671.19	ENSMUST00000109269.8	6188	24	766	0	766	0	multi-exon	FALSE	canonical	1	1	junction_23	201.369798731612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	165719591	165627228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165694787_165694800_165717624_165717696_165718204
ES_00034342	chr2	-	2332	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	410	92	at_least_one_novel_splicesite	FALSE	non_canonical	1	80	junction_10	169.600383254284	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTTTTCTTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	165703515	165668956	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165703460
ES_00034343	chr2	-	2746	13	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	-891	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	8	junction_12	182.118703658417	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGAATGGTTGTGTTTA	NA	False	NA	33	True	AATAGA	-13	NA	165727685	165669048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527_165726759_165727426
ES_00034344	chr2	-	2432	12	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	123	junction_1	142.585917262726	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGAATGGTTGTGTTTA	NA	False	NA	33	True	AATAGA	-13	NA	165740936	165669048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
ES_00034345	chr2	-	2892	12	NNC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	174.657729041831	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGAATGGTTGTGTTTA	NA	False	NA	33	True	AATAGA	-13	NA	165740951	165669048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527_165726759_165740835
ES_00034347	chr2	-	208	1	Intergenic	novelGene_2422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTCAGCAGTTAAACGT	NA	False	NA	NA	False	NA	NA	NA	165757971	165757763	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_165757800_165758000
ES_00034348	chr2	-	217	1	Intergenic	novelGene_2424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTATTTGTTTGTTTTG	6635	False	NA	NA	False	NA	NA	NA	165801646	165801429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_165801400_165801600
ES_00034349	chr2	-	4675	22	NNC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	-333	95495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.198351124904	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAGAGAGATTGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	165997916	165819513	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165819547_165915835_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
ES_00034350	chr2	-	3808	22	FSM	ENSMUSG00000006800.15	ENSMUST00000146497.9	3808	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	257.404161765755	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165997583	165915833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165983633_165983687_165997422
ES_00034352	chr2	-	2144	1	Intergenic	novelGene_2426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGTCATAGTGTCTG	NA	False	NA	0	True	NA	NA	NA	166096622	166094478	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_166094500_166096600
ES_00034353	chr2	-	1087	5	FSM	ENSMUSG00000085682.3	ENSMUST00000228242.2	1106	5	24	-5	24	0	multi-exon	FALSE	canonical	0	0	junction_4	16.5755844542508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTCTTGACTTTTTGTT	NA	False	NA	-1	True	AATAAA	-17	NA	166351048	166341955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166351032
ES_00034354	chr2	-	2796	4	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	59	0	intron_retention	FALSE	canonical	3	17	junction_3	8.52447456836295	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTCTTGACTTTTTGTT	NA	False	NA	-1	True	AATAAA	-17	NA	166349932	166341955	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166349807
ES_00034355	chr2	-	862	2	FSM	ENSMUSG00000039536.17	ENSMUST00000134664.2	862	2	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAAGGCAGTGTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	166792876	166791613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_166791750_166792150
ES_00034356	chr2	-	397	2	Intergenic	novelGene_2429	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	166856319	166849923	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_166850259_166856257
ES_00034357	chr2	-	419	2	Antisense	novelGene_ENSMUSG00000017999.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATCTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166861073	166853276	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_166853412_166860789
ES_00034359	chr2	-	1746	5	NNC	ENSMUSG00000078923.11	novel	924	5	NA	NA	0	29651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	986.988475110019	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAATGACCTTGAACTCA	9431	False	NA	NA	False	NA	NA	NA	167473902	167419906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_167419933_167449765_167451168_167452223_167452350_167459748_167459898_167473859
ES_00034361	chr2	-	5273	5	FSM	ENSMUSG00000051149.16	ENSMUST00000057793.11	4917	5	-356	0	-166	0	multi-exon	FALSE	canonical	3	20	junction_3	74.0249113474647	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGCTTTTATTACACAC	2751	False	NA	-1	True	AATAAA	-25	NA	168049198	168022905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168046519_168046695_168048493
ES_00034364	chr2	-	2304	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	0	-1228	0	-5	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGACTATAATGTTATCGA	NA	False	NA	NA	False	ATTAAA	-22	NA	168072511	168050972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
ES_00034366	chr2	-	300	2	Intergenic	novelGene_2437	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAATGAAACCCATTGT	NA	False	NA	NA	False	NA	NA	NA	168153072	168090731	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_168090761_168152801
ES_00034367	chr2	-	3459	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109177.8	3456	28	0	-3	0	3	multi-exon	FALSE	canonical	2	6	junction_27	57.8025587882503	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGCTTTTCATTTTTAA	6290	False	NA	-20	True	GATAAA	-19	NA	168584053	168476354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168584007
ES_00034370	chr2	-	1658	2	NNC	ENSMUSG00000027547.18	novel	2534	3	NA	NA	-66345	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	NA	False	NA	-20	True	AATAAA	-19	NA	168676208	168590254	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_168591884_168676179
ES_00034371	chr2	-	5580	6	NNC	ENSMUSG00000052056.15	novel	5685	6	NA	NA	291	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.953260514015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCGTGGTTTTCATT	NA	False	NA	0	True	AATATA	-20	NA	169972849	169950562	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_169952577_169954401_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169972780
ES_00034373	chr2	-	217	2	Intergenic	novelGene_2454	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAAGGTTTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	170092623	170092208	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_170092365_170092562
ES_00034374	chr2	-	1434	3	FSM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	-55	-785	0	-2	multi-exon	FALSE	canonical	3	10	junction_2	33.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGAGGTGGTTTTTTTT	4146	False	NA	-1	True	AATAAA	-20	NA	170191715	170189065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_170190069_170191101_170191384_170191566
ES_00034376	chr2	-	3829	8	NNC	ENSMUSG00000008999.8	novel	3670	7	NA	NA	-291	-2	at_least_one_novel_splicesite	TRUE	non_canonical	3	27	junction_1	26.7840951891611	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGTGTGTATTTGTGTC	NA	False	NA	-1	True	AATAAA	-28	NA	172782405	172709806	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_172710845_172710974_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
ES_00034377	chr2	-	4511	11	NIC	ENSMUSG00000055897.14	novel	4552	13	NA	NA	2	269	intron_retention	FALSE	canonical	3	8	junction_5	6.36867333123626	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCAGCTGGCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	173501326	173426428	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_173428909_173429625_173429715_173430959_173431044_173431297_173431468_173431580_173432590_173433909_173434015_173434594_173434808_173438832_173438981_173450525_173450673_173501115_173501161_173501305
ES_00034378	chr2	-	790	5	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	2	7	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.8309518948453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTCTCTTTCTCCTTGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	173501326	173437891	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173501115_173501161_173501305
ES_00034379	chr2	-	946	6	NIC	ENSMUSG00000055897.14	novel	5637	16	NA	NA	1	-8	combination_of_known_junctions	TRUE	canonical	2	5	junction_3	6.38748776906852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACCTGTAAAGAAAATTGT	NA	False	NA	NA	False	ATTAAA	-1	NA	173501160	173437906	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_173438321_173438832_173438981_173441382_173441481_173450525_173450673_173457275_173457370_173501115
ES_00034381	chr2	-	446	4	NNC	ENSMUSG00000016252.8	novel	421	3	NA	NA	0	18883	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1250.63619365861	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGTGAGAAGGGTGCCC	NA	False	NA	NA	False	NA	NA	NA	174305882	174283981	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_174284026_174302867_174303015_174304292_174304423_174305757
ES_00034383	chr2	-	511	6	Fusion	ENSMUSG00000085608.2_ENSMUSG00000078905.9_ENSMUSG00000081949.4	novel	564	3	NA	NA	-107	-9	multi-exon	FALSE	canonical	0	0	junction_5	27.1985293720083	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTGTAATTCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	174951915	174865155	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_174865271_174905392_174905454_174905660_174905788_174909492_174909546_174911171_174911217_174951805
ES_00034384	chr2	-	3768	5	NNC	ENSMUSG00000078905.9	novel	625	4	NA	NA	-1882	3067	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	32.0341614530488	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGATGGACAGACAG	NA	False	NA	NA	False	AATAAA	-11	NA	174911456	174900274	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_174903715_174905392_174905454_174905660_174905788_174909492_174909546_174911369
ES_00034385	chr2	-	578	5	Fusion	ENSMUSG00000078905.9_ENSMUSG00000081949.4	novel	564	3	NA	NA	-137	-142	multi-exon	FALSE	canonical	0	0	junction_4	28.6563692745609	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTAATTTTTGTTTGCA	NA	False	NA	NA	False	NA	NA	NA	174951945	174905240	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_174905454_174905660_174905788_174909492_174909546_174911171_174911217_174951805
ES_00034386	chr2	-	502	5	Fusion	ENSMUSG00000078903.11_ENSMUSG00000090093.9	novel	1911	4	NA	NA	-10	824	multi-exon	FALSE	canonical	3	18	junction_3	25.1992063367083	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175048720	174973450	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_174973563_174974721_174974783_174974988_174975116_175044851_175044907_175048573
ES_00034388	chr2	-	4097	6	NNC	ENSMUSG00000078903.11	novel	1956	6	NA	NA	0	-1062	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	85.2455277419291	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175048669	175033919	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_175036623_175037125_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
ES_00034389	chr2	-	5536	2	FSM	ENSMUSG00000078903.11	ENSMUST00000151240.2	5536	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATGGAGTTAATAAATAC	NA	False	NA	NA	False	NA	NA	NA	175048669	175039466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175044907_175048573
ES_00034390	chr2	-	553	4	FSM	ENSMUSG00000078897.11	ENSMUST00000109046.10	1497	4	-136	1080	-136	513	multi-exon	FALSE	canonical	2	6	junction_1	119.402214757051	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAAGAAGCTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	175274111	175265172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175265399_175266555_175266617_175266821_175266949_175273972
ES_00034392	chr2	-	1133	2	FSM	ENSMUSG00000095648.8	ENSMUST00000178872.3	192	2	0	-941	0	941	multi-exon	FALSE	canonical	3	155	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATACTGTTCCCATTTC	NA	False	NA	NA	False	NA	NA	NA	175886490	175885151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_175886158_175886363
ES_00034394	chr2	-	5737	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120959.8	1458	4	-82	-4197	-72	2845	multi-exon	FALSE	canonical	3	26	junction_2	108.739239569818	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGGTATGGATTGTAAA	NA	False	NA	NA	False	NA	NA	NA	176178648	176162225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178462
ES_00034395	chr2	-	335	3	Antisense	novelGene_ENSMUSG00000078877.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	119	junction_2	77.5	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCTTTACCACATTGTT	NA	False	NA	NA	False	NA	NA	NA	176502862	176501603	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_176501703_176501870_176502020_176502775
ES_00034396	chr2	-	335	3	Antisense	novelGene_ENSMUSG00000078877.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	115	junction_1	8	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCTTTACCACATTGTT	NA	False	NA	NA	False	NA	NA	NA	176502862	176501603	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_176501703_176502122_176502272_176502775
ES_00034397	chr2	-	229	2	Antisense	novelGene_ENSMUSG00000078877.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	137	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGAGGTCACCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	176502862	176502549	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_176502692_176502775
ES_00034398	chr2	-	361	2	NNC	ENSMUSG00000083170.2	novel	2330	3	NA	NA	-8975	-3571	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATTGGACTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	176556316	176547214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176547342_176556082
ES_00034401	chr2	-	3643	3	NNC	ENSMUSG00000083111.2	novel	1958	3	NA	NA	-4759	1732	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	4.5	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	176753390	176743576	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176747091_176748242_176748304_176753322
ES_00034402	chr2	-	3753	6	Fusion	ENSMUSG00000082765.4_ENSMUSG00000078870.10	novel	1113	4	NA	NA	-69	1709	multi-exon	TRUE	canonical	0	0	junction_1	118.470924703068	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCGTGGTGGCGCACGCC	NA	False	NA	NA	False	NA	NA	NA	176898283	176815546	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_176817516_176884681_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
ES_00034403	chr2	-	5215	6	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10788	78077	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	241.991239510855	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATCTTTAAATCACA	NA	False	NA	NA	False	NA	NA	NA	176969617	176878369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176878485_176952506_176957076_176957159_176957402_176958542_176958604_176958795_176958922_176969515
ES_00034404	chr2	-	6021	7	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078867.10_ENSMUSG00000078868.4	novel	1581	4	NA	NA	0	78077	multi-exon	TRUE	canonical	3	39	junction_4	110.624615504668	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATCTTTAAATCACA	NA	False	NA	NA	False	NA	NA	NA	177090112	176878369	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_176878485_176952506_176956599_177006227_177007703_177008856_177008918_177009124_177009252_177086489_177086545_177090016
ES_00034405	chr2	-	5279	5	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078865.9	novel	531	4	NA	NA	0	78077	multi-exon	FALSE	canonical	3	163	junction_1	412.013576839405	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATCTTTAAATCACA	2337	False	NA	NA	False	NA	NA	NA	177270003	176878369	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_176878485_176952506_176957402_177263226_177263288_177263479_177263607_177269922
ES_00034407	chr2	-	795	4	NIC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	4	-393	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	147.159777113177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCTATGAATGTAACCA	NA	False	NA	NA	False	NA	NA	NA	176898210	176885542	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176898132
ES_00034409	chr2	-	1120	2	ISM	ENSMUSG00000083817.2	ENSMUST00000117234.2	2135	3	17	2152	17	-2152	5prime_fragment	FALSE	canonical	3	74	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCCCATTTCATGTT	7095	False	NA	83	True	NA	NA	NA	176920739	176919417	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_176920428_176920629
ES_00034410	chr2	-	6792	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5316	5677	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_2	218	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAGACTACTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	176964145	176950769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_176957402_176958542_176958604_176964046
ES_00034411	chr2	-	422	4	NNC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-161235	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_2	85.0921069586755	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177251348	177079693	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_177079803_177080953_177081015_177081219_177081347_177251223
ES_00034413	chr2	-	1455	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	3057	-875	3046	875	3prime_fragment	FALSE	canonical	3	782	junction_2	220	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTCATCAGTATAATCAG	5394	False	NA	NA	False	NA	NA	NA	177266946	177262144	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_177263288_177263479_177263607_177266761
ES_00034418	chr2	-	1515	7	FSM	ENSMUSG00000027566.16	ENSMUST00000126021.8	1515	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1822.50292638082	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684188	179678166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179683431
ES_00034419	chr2	-	1157	7	FSM	ENSMUSG00000027566.16	ENSMUST00000129529.9	1157	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1848.62763662369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684203	179678166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_179678633_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ES_00034423	chr2	-	2898	2	FSM	ENSMUSG00000038671.16	ENSMUST00000152334.2	2179	2	-723	4	-723	-4	multi-exon	FALSE	canonical	3	303	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTAAAGTTGGGGTGAC	NA	False	NA	-26	True	AGTAAA	-8	NA	181002656	180999681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_181001355_181001431
ES_00034428	chr2	-	1793	14	NNC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_13	36.7516855468228	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4583	False	NA	1	True	AATAAA	-23	NA	181223765	181210941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216828_181223648
ES_00034432	chr2	-	1456	4	NIC	ENSMUSG00000002458.14	novel	779	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	30	junction_3	52.8036194045657	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335740	181330214	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_181331405_181331494_181331570_181333025_181333148_181335671
ES_00034433	chr2	+	201	1	Intergenic	novelGene_2150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAATCTAAATTCTGAAA	3303	False	NA	NA	False	NA	NA	NA	5898804	5899005	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_5898800_5899000
ES_00034434	chr2	+	234	1	Intergenic	novelGene_2151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCAGGCGGATTTCTGAGT	20	False	NA	NA	False	NA	NA	NA	5954621	5954855	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_5954600_5954900
ES_00034436	chr2	+	298	1	Intergenic	novelGene_2156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTACCCAGCTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	14354942	14355240	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_14354900_14355200
ES_00034437	chr2	+	497	1	Intergenic	novelGene_2161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCCTCCCTCCTCCCCCC	NA	False	NA	NA	False	NA	NA	NA	17945319	17945816	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_17945300_17945800
ES_00034438	chr2	+	908	1	Intergenic	novelGene_2163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACTATAACCAAACTGTT	NA	False	NA	NA	False	NA	NA	NA	20502603	20503511	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_20502600_20503500
ES_00034439	chr2	+	457	1	Intergenic	novelGene_2164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACTCGCCTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	20503848	20504305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_20503800_20504300
ES_00034440	chr2	+	290	1	Intergenic	novelGene_2166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAGCAACACTTTACAAAA	NA	False	NA	NA	False	NA	NA	NA	20504593	20504883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_20504600_20504900
ES_00034441	chr2	+	206	1	Intergenic	novelGene_2182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTACACATTCTCAATG	NA	False	NA	NA	False	NA	NA	NA	25792585	25792791	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_25792600_25792800
ES_00034442	chr2	+	208	1	Intergenic	novelGene_2184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGTGAGGTTGTGCACAG	NA	False	NA	NA	False	NA	NA	NA	26176900	26177108	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_26176900_26177100
ES_00034443	chr2	+	251	1	Intergenic	novelGene_2201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGATAGCCTAAAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	30861763	30862014	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_30861800_30862000
ES_00034444	chr2	+	211	1	Intergenic	novelGene_2202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCTACCATGCCCCAGTG	6109	False	NA	NA	False	NA	NA	NA	30988472	30988683	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_30988500_30988700
ES_00034445	chr2	+	202	1	Intergenic	novelGene_2208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAACCCCATTCTTGCTT	9462	False	NA	NA	False	NA	NA	NA	32015906	32016108	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_32015900_32016100
ES_00034446	chr2	+	207	1	Intergenic	novelGene_2218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAGGGCTACCTGCAGT	NA	False	NA	NA	False	NA	NA	NA	33282446	33282653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_33282400_33282700
ES_00034447	chr2	+	204	1	Intergenic	novelGene_2221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCCAGTGCTTAGAGG	2031	False	NA	NA	False	NA	NA	NA	33910709	33910913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_33910700_33910900
ES_00034448	chr2	+	208	1	Intergenic	novelGene_2224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGTCTTTCTTATTAC	NA	False	NA	NA	False	NA	NA	NA	34272082	34272290	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34272100_34272300
ES_00034449	chr2	+	284	1	Intergenic	novelGene_2227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAGGGCTACACAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	34533192	34533476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34533200_34533500
ES_00034450	chr2	+	207	1	Intergenic	novelGene_2231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGGTTTTGTAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	34721315	34721522	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34721300_34721500
ES_00034451	chr2	+	227	1	Intergenic	novelGene_2236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	540	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGAACTCTTTTAAGCT	NA	False	NA	NA	False	NA	NA	NA	38224561	38224788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_38224600_38224800
ES_00034452	chr2	+	202	1	Intergenic	novelGene_2241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTGAAGGCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	41391575	41391777	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_41391600_41391800
ES_00034453	chr2	+	833	1	Intergenic	novelGene_2243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGCTTCTGTCTGTCAA	NA	False	NA	NA	False	AAGAAA	-22	NA	41875975	41876808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_41876000_41876800
ES_00034454	chr2	+	206	1	Intergenic	novelGene_2248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGAGTGCTATTATCCTT	NA	False	NA	NA	False	NA	NA	NA	43167153	43167359	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_43167200_43167400
ES_00034455	chr2	+	245	1	Intergenic	novelGene_2249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGAGGGACAGCAGAT	NA	False	NA	NA	False	NA	NA	NA	44207776	44208021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_44207800_44208000
ES_00034456	chr2	+	235	1	Intergenic	novelGene_2252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAGGAGGATTTATAAAC	NA	False	NA	NA	False	NA	NA	NA	45793963	45794198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_45794000_45794200
ES_00034457	chr2	+	201	1	Intergenic	novelGene_2255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTTAAAAAACCCAGTT	NA	False	NA	NA	False	NA	NA	NA	52688617	52688818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_52688600_52688800
ES_00034459	chr2	+	219	1	Intergenic	novelGene_2270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAAATGTAATTTCATTT	1412	False	NA	NA	False	NA	NA	NA	69751932	69752151	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69751900_69752200
ES_00034460	chr2	+	219	1	Intergenic	novelGene_2273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGTTGCATAGGCACAAT	NA	False	NA	NA	False	NA	NA	NA	70348541	70348760	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_70348500_70348800
ES_00034461	chr2	+	227	1	Intergenic	novelGene_2276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTCTAACAACCCTATTA	NA	False	NA	NA	False	NA	NA	NA	70612145	70612372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_70612100_70612400
ES_00034462	chr2	+	229	1	Intergenic	novelGene_2278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTCAAGCCATGCCCAGT	9723	False	NA	NA	False	NA	NA	NA	71755565	71755794	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_71755600_71755800
ES_00034463	chr2	+	205	1	Intergenic	novelGene_2279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCACATAATATGTACTC	NA	False	NA	NA	False	NA	NA	NA	73084906	73085111	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_73084900_73085100
ES_00034464	chr2	+	236	1	Intergenic	novelGene_2287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAAAATTAATATCTAC	NA	False	NA	NA	False	NA	NA	NA	80482351	80482587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_80482400_80482600
ES_00034465	chr2	+	212	1	Intergenic	novelGene_2288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATGAGTTTCTATGAT	NA	False	NA	NA	False	NA	NA	NA	80673707	80673919	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_80673700_80673900
ES_00034466	chr2	+	218	1	Intergenic	novelGene_2289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTGGGTTACTGTATTC	NA	False	NA	NA	False	NA	NA	NA	83547697	83547915	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_83547700_83547900
ES_00034467	chr2	+	225	1	Intergenic	novelGene_2291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	84411837	84412062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_84411800_84412100
ES_00034468	chr2	+	1604	1	Intergenic	novelGene_2292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCCTTTTAACATTGCA	NA	False	NA	NA	False	NA	NA	NA	84569854	84571458	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_84569900_84571500
ES_00034469	chr2	+	332	1	Intergenic	novelGene_2312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAGTGGTCTACTGTAT	NA	False	NA	NA	False	CATAAA	-6	NA	92641571	92641903	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_92641600_92641900
ES_00034472	chr2	+	231	1	Intergenic	novelGene_2317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAAGTTGTTAACCATA	NA	False	NA	NA	False	NA	NA	NA	102093355	102093586	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_102093400_102093600
ES_00034473	chr2	+	323	1	Intergenic	novelGene_2318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCAAAGGACCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	103648886	103649209	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_103648900_103649200
ES_00034475	chr2	+	223	1	Intergenic	novelGene_2323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTCTTTTGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	104717904	104718127	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_104717900_104718100
ES_00034476	chr2	+	207	1	Intergenic	novelGene_2324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATGAGTTTTAATTGAA	NA	False	NA	NA	False	NA	NA	NA	104758276	104758483	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_104758300_104758500
ES_00034477	chr2	+	584	1	Intergenic	novelGene_2331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAAAACCTGTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	110294181	110294765	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_110294200_110294800
ES_00034478	chr2	+	215	1	Intergenic	novelGene_2335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAGTGAACAGAGACGTT	8883	False	NA	NA	False	NA	NA	NA	112293864	112294079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_112293900_112294100
ES_00034480	chr2	+	2486	1	Intergenic	novelGene_2337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCTGTACATGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	119308533	119311019	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_119308500_119311000
ES_00034481	chr2	+	200	1	Intergenic	novelGene_2339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTGGAGGAGGTGAAGAA	4822	False	NA	NA	False	NA	NA	NA	119609584	119609784	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_119609600_119609800
ES_00034482	chr2	+	212	1	Intergenic	novelGene_2345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAGGGATAAGGGGAGCT	NA	False	NA	NA	False	NA	NA	NA	120605148	120605360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_120605100_120605400
ES_00034483	chr2	+	203	1	Intergenic	novelGene_2347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGAGCCATCTCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	121109097	121109300	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121109100_121109300
ES_00034484	chr2	+	337	1	Intergenic	novelGene_2353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTTACATATAATAAATAAA	1513	False	NA	NA	False	NA	NA	NA	121720020	121720357	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121720000_121720400
ES_00034485	chr2	+	336	1	Intergenic	novelGene_2354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAGTTGCCATACGCAT	NA	False	NA	NA	False	NA	NA	NA	122012122	122012458	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_122012100_122012500
ES_00034486	chr2	+	261	1	Intergenic	novelGene_2355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGCCGGTCTCCGCTGT	NA	False	NA	NA	False	NA	NA	NA	126371067	126371328	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_126371100_126371300
ES_00034488	chr2	+	313	1	Intergenic	novelGene_2369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	130678375	130678688	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_130678400_130678700
ES_00034490	chr2	+	215	1	Intergenic	novelGene_2386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTTTTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	150138086	150138301	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_150138100_150138300
ES_00034491	chr2	+	201	1	Intergenic	novelGene_2391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	517	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCTGTAAATTTTAAAAG	1502	False	NA	NA	False	NA	NA	NA	153121882	153122083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_153121900_153122100
ES_00034492	chr2	+	258	1	Intergenic	novelGene_2395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGCTGATAGAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	153524095	153524353	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_153524100_153524400
ES_00034493	chr2	+	211	1	Intergenic	novelGene_2396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTACATGGCTTCAAGTT	4520	False	NA	NA	False	NA	NA	NA	153929581	153929792	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_153929600_153929800
ES_00034495	chr2	+	206	1	Intergenic	novelGene_2403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAGAGAGAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	157243696	157243902	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_157243700_157243900
ES_00034496	chr2	+	527	1	Intergenic	novelGene_2405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTTGGTTCTTTTTTA	1592	False	NA	NA	False	NA	NA	NA	157428007	157428534	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_157428000_157428500
ES_00034497	chr2	+	327	1	Intergenic	novelGene_2406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGTAAATAGATTAGATA	2414	False	NA	NA	False	NA	NA	NA	157428829	157429156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_157428800_157429200
ES_00034498	chr2	+	1377	1	Intergenic	novelGene_2407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAACTTCAGAAGGATTGC	3174	False	NA	NA	False	NA	NA	NA	157429589	157430966	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_157429600_157431000
ES_00034499	chr2	+	209	1	Intergenic	novelGene_2409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGGTTCTTATGATGCC	NA	False	NA	NA	False	NA	NA	NA	157896176	157896385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_157896200_157896400
ES_00034500	chr2	+	259	1	Intergenic	novelGene_2410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCCAACATTTAAGTCA	NA	False	NA	NA	False	NA	NA	NA	158008074	158008333	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_158008100_158008300
ES_00034501	chr2	+	204	1	Intergenic	novelGene_2411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAAATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	158135734	158135938	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_158135700_158135900
ES_00034503	chr2	+	252	1	Intergenic	novelGene_2418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTCAAGCACGGGTGGG	NA	False	NA	NA	False	NA	NA	NA	164147704	164147956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_164147700_164148000
ES_00034505	chr2	+	211	1	Intergenic	novelGene_2420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTCTATGTCCATGAAAC	NA	False	NA	NA	False	NA	NA	NA	164871927	164872138	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_164871900_164872100
ES_00034506	chr2	+	216	1	Intergenic	novelGene_2423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTCTTTCTACCTAAAC	NA	False	NA	NA	False	NA	NA	NA	165758171	165758387	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_165758200_165758400
ES_00034507	chr2	+	209	1	Intergenic	novelGene_2428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCATTTTGAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	166689311	166689520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_166689300_166689500
ES_00034508	chr2	+	212	1	Intergenic	novelGene_2433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCACCCAGCCAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	167297617	167297829	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_167297600_167297800
ES_00034509	chr2	+	295	1	Intergenic	novelGene_2444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGCTTTGGTTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	168719915	168720210	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168719900_168720200
ES_00034510	chr2	+	214	1	Intergenic	novelGene_2450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	170022522	170022736	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_170022500_170022700
ES_00034511	chr2	+	295	1	Intergenic	novelGene_2451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCTTTAAAAAAACACACAG	NA	False	NA	NA	False	NA	NA	NA	170029931	170030226	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_170029900_170030200
ES_00034512	chr2	+	449	1	Intergenic	novelGene_2460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAACAAAAAAAA	4119	False	NA	NA	False	NA	NA	NA	173086924	173087373	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_173086900_173087400
ES_00034513	chr2	+	3120	1	Intergenic	novelGene_2462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGGAAACCCATCTCAGG	NA	False	NA	NA	False	NA	NA	NA	174806182	174809302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_174806200_174809300
ES_00034518	chr2	+	4439	15	NNC	ENSMUSG00000026643.17	novel	4461	14	NA	NA	0	98966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	73.6385616039724	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTGAACTTACAGAGATC	1032	False	NA	NA	False	NA	NA	NA	3285293	3428880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107_3329910_3428852
ES_00034520	chr2	+	4580	6	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	37515	-1460	31095	1	3prime_fragment	FALSE	canonical	3	51	junction_3	8.23164625090267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTTGCCTCTTGGACAC	4803	False	NA	NA	False	ATTAAA	-22	NA	4602081	4618855	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
ES_00034521	chr2	+	2799	7	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	10	363	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	183.08596948489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGGACTTGCTTCTA	6922	False	NA	23	True	AATAAA	-32	NA	4889204	4913311	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ES_00034523	chr2	+	855	5	FSM	ENSMUSG00000026668.11	ENSMUST00000115010.9	847	5	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAACACTGTGTATCAT	4773	False	NA	NA	False	AATAAA	-7	NA	4980953	4990551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_4981121_4981465_4981532_4981620_4981717_4986048_4986148_4990124
ES_00034524	chr2	+	224	2	Intergenic	novelGene_2149	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCCCTTTCTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	5036412	5079794	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_5036437_5079594
ES_00034527	chr2	+	5311	23	NNC	ENSMUSG00000043241.15	novel	5174	22	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	70.0875632971044	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCATGATTTGTTTTAT	1727	False	NA	12	True	AATAAA	-16	NA	5956328	6061509	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_5956365_5957238_5957433_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051711_6051877_6055148_6055291_6056319_6056441_6060243
ES_00034528	chr2	+	284	1	FSM	ENSMUSG00000086358.3	ENSMUST00000193685.2	2782	1	17	2481	17	-2481	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTAACTGTTTTGCTCCGT	4825	False	NA	NA	False	NA	NA	NA	13276429	13276713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_13276400_13276700
ES_00034529	chr2	+	357	1	Intergenic	novelGene_2154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGTGCATAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	14352609	14352966	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_14352600_14353000
ES_00034530	chr2	+	354	1	FSM	ENSMUSG00000083860.3	ENSMUST00000118938.3	1084	1	552	178	552	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCACTGTACTGAAAAG	7625	False	NA	NA	False	NA	NA	NA	15132962	15133316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_15133000_15133300
ES_00034531	chr2	+	1259	2	Intergenic	novelGene_2160	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTTGTTAGTCTGTC	NA	False	NA	2	True	NA	NA	NA	17940963	17952119	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_17941086_17950982
ES_00034532	chr2	+	4989	24	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	73.2903437033231	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4690	False	NA	12	True	AATAAA	-16	NA	18069494	18217199	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00034533	chr2	+	4832	22	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_7	64.0821468269448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4700	False	NA	12	True	AATAAA	-16	NA	18069504	18217199	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ES_00034534	chr2	+	968	4	NNC	ENSMUSG00000036617.18	novel	3074	4	NA	NA	-177	5931	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	82.3097132110718	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTCTGTATACAGCAGT	4619	False	NA	NA	False	NA	NA	NA	20524424	20673058	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20672887
ES_00034535	chr2	+	767	1	Intergenic	novelGene_2170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCCGGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	22634254	22635021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_22634300_22635000
ES_00034536	chr2	+	444	2	Intergenic	novelGene_2171	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCCGGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	22634254	22635021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_22634432_22634754
ES_00034537	chr2	+	373	2	Intergenic	novelGene_2172	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCCGGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	22634304	22635021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_22634358_22634701
ES_00034538	chr2	+	741	5	FSM	ENSMUSG00000026784.15	ENSMUST00000148072.8	741	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	115.692210195847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGAAAACATACAGTTAA	5608	False	NA	NA	False	NA	NA	NA	22785533	22802711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802528
ES_00034539	chr2	+	3734	14	NIC	ENSMUSG00000026781.18	novel	4566	14	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	39.0328340013573	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGCTAACTGTATTGA	NA	False	NA	NA	False	AATAAA	-15	NA	22958253	23004520	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_22958299_22958891_22959078_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
ES_00034541	chr2	+	3570	12	FSM	ENSMUSG00000026781.18	ENSMUST00000114523.10	3632	12	62	0	62	0	multi-exon	FALSE	canonical	3	42	junction_8	21.9175766290267	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAACTGTATTGACT	NA	False	NA	NA	False	AATAAA	-17	NA	22959400	23004522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
ES_00034542	chr2	+	648	2	FSM	ENSMUSG00000026775.10	ENSMUST00000148616.2	662	2	0	14	0	-14	multi-exon	FALSE	canonical	3	665	junction_1	0	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGGTGCTGGGAGAAATG	NA	False	NA	NA	False	NA	NA	NA	23058385	23063594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_23058407_23062967
ES_00034544	chr2	+	2770	1	FSM	ENSMUSG00000102704.2	ENSMUST00000192063.2	1518	1	10	-1262	10	1262	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTGACTACTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	23382952	23385722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_23383000_23385700
ES_00034545	chr2	+	204	2	Antisense	novelGene_ENSMUSG00000036893.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	172	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAGAAGTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24744280	24750663	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_24744332_24750510
ES_00034546	chr2	+	390	3	FSM	ENSMUSG00000036833.17	ENSMUST00000139031.2	378	3	-12	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	3	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGGTAATCCCTATGGG	NA	False	NA	NA	False	NA	NA	NA	24866100	24870114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24866326_24868137_24868234_24870045
ES_00034547	chr2	+	398	2	FSM	ENSMUSG00000006476.20	ENSMUST00000135328.2	504	2	0	106	0	-106	multi-exon	FALSE	canonical	2	6	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACAACTGTTGCCTGGAC	NA	False	NA	NA	False	NA	NA	NA	24945891	24947253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_24946149_24947112
ES_00034548	chr2	+	261	2	Intergenic	novelGene_2180	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGTTTCACGGACTTTC	NA	False	NA	NA	False	NA	NA	NA	25099631	25146918	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_25099661_25146686
ES_00034549	chr2	+	1118	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-8	-9	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	105.177751330783	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGAGACTTGAGCTGT	164	False	NA	-2	True	NA	NA	NA	26476633	26482679	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482254_26482429
ES_00034550	chr2	+	1053	8	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	112.260811487885	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGAGACTTGAGCTGTTG	205	False	NA	0	True	NA	NA	NA	26476674	26482681	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26482129_26482293_26482429
ES_00034552	chr2	+	1245	9	NIC	ENSMUSG00000026921.21	novel	541	6	NA	NA	9	8	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	112.21853679317	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGGAATGGGGACTGCG	240	False	NA	23	True	AATAAA	-23	NA	26476709	26482704	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_26476833_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ES_00034554	chr2	+	1032	7	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	4686	junction_6	264.743114483959	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800832	26803330	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ES_00034555	chr2	+	1263	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	39	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	113.91821627817	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806431	26810184	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809614
ES_00034558	chr2	+	1274	4	FSM	ENSMUSG00000015488.15	ENSMUST00000114005.9	1286	4	12	0	12	0	multi-exon	FALSE	canonical	0	0	junction_3	42.9262934186807	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTACCTGTTCATCTATT	NA	False	NA	NA	False	AGTAAA	-18	NA	26899949	26906861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26905954
ES_00034559	chr2	+	532	2	FSM	ENSMUSG00000109946.2	ENSMUST00000209262.2	509	2	-23	0	-23	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGAGTGGTGTGGAGTCA	NA	False	NA	NA	False	NA	NA	NA	27332491	27333116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_27332831_27332923
ES_00034560	chr2	+	2753	12	NNC	ENSMUSG00000026803.18	novel	4160	12	NA	NA	5498	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	20.6593784358429	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAAATGACTTGAA	NA	False	NA	21	True	AATAAA	-23	NA	28955775	28977668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964814_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118_28976918_28977130
ES_00034561	chr2	+	704	2	Antisense	novelGene_ENSMUSG00000048316.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	76	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGGATGGTCCCTAGGTG	NA	False	NA	NA	False	NA	NA	NA	29598938	29632675	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_29599082_29632114
ES_00034562	chr2	+	2885	2	Intergenic	novelGene_2193	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGCCAGATGGACTTG	1236	False	NA	NA	False	NA	NA	NA	29630995	29634190	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_29631805_29632114
ES_00034563	chr2	+	224	3	Intergenic	novelGene_2194	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTTTTCAAATTGGT	1377	False	NA	NA	False	NA	NA	NA	29645173	29724360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_29645196_29699013_29699037_29724181
ES_00034564	chr2	+	860	7	FSM	ENSMUSG00000026798.11	ENSMUST00000176348.8	860	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	47.2666784203088	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGCCTTTCTCTCCACAC	NA	False	NA	NA	False	AAAACA	-43	NA	29678231	29686614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680543_29685392_29685523_29685947_29686042_29686419
ES_00034565	chr2	+	2235	17	NIC	ENSMUSG00000026790.20	novel	403	5	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	114	junction_1	289.807020920819	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	6653	False	NA	13	True	AATAAA	-17	NA	29779256	29812551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29779291_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ES_00034566	chr2	+	2100	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7220	False	NA	13	True	AATAAA	-17	NA	29779823	29812551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ES_00034567	chr2	+	909	3	FSM	ENSMUSG00000019715.15	ENSMUST00000149730.2	931	3	0	22	0	-22	multi-exon	FALSE	canonical	3	512	junction_1	3.5	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCCTTTCAGCTTGTTG	5351	False	NA	NA	False	NA	NA	NA	29832736	29834754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29832779_29833736_29833850_29834000
ES_00034570	chr2	+	2670	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	178	89048	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	5496.39693202511	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGCTTAAGCCAGGCAG	NA	False	NA	NA	False	AATAAA	-41	NA	29952042	30051637	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29962585_30051608
ES_00034571	chr2	+	844	3	FSM	ENSMUSG00000054766.14	ENSMUST00000147590.2	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	15823	junction_2	947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	29960181	29961441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_29960368_29960452_29960600_29960930
ES_00034574	chr2	+	1195	10	FSM	ENSMUSG00000079484.13	ENSMUST00000113643.8	1195	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	23.0029520381436	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAATATATTTTATATG	NA	False	NA	NA	False	AATAAA	-6	NA	30156860	30172149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ES_00034577	chr2	+	899	1	FSM	ENSMUSG00000026854.17	ENSMUST00000192882.2	1901	1	686	316	591	-316	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGACTGCAGTCGCTCT	NA	False	NA	NA	False	NA	NA	NA	30873031	30873930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_30873000_30873900
ES_00034578	chr2	+	4098	24	NNC	ENSMUSG00000026854.17	novel	430	6	NA	NA	145	-938	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_1	10.5407661236074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTACTGTGACACTGT	NA	False	NA	23	True	AATAAA	-23	NA	30886204	30912656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_30886377_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
ES_00034580	chr2	+	888	1	FSM	ENSMUSG00000088891.4	ENSMUST00000158266.4	124	1	-97	-667	-97	667	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTGGTCATGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	31079605	31080493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_31079600_31080500
ES_00034581	chr2	+	8678	31	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	120	junction_19	92.1634357480714	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACATGCTTTCTCAGGCT	6650	False	NA	8	True	AATAAA	-24	NA	32041093	32124533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109225_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
ES_00034582	chr2	+	627	5	FSM	ENSMUSG00000039262.17	ENSMUST00000129626.8	623	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	441	junction_4	26.2963875846094	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGTGTTTGCAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	32109537	32112331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301
ES_00034584	chr2	+	2688	16	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	-7	0	intron_retention	FALSE	canonical	3	15	junction_4	21.1281802339908	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253065	32268309	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260058_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ES_00034586	chr2	+	751	5	FSM	ENSMUSG00000026820.6	ENSMUST00000130121.3	765	5	14	0	14	0	multi-exon	FALSE	canonical	3	185	junction_3	7.39509972887452	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCAGAAGCCTAACCTTG	8681	False	NA	NA	False	NA	NA	NA	32287496	32291588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32287748_32290061_32290121_32290414_32290565_32290889_32291091_32291498
ES_00034587	chr2	+	619	1	FSM	ENSMUSG00000083004.2	ENSMUST00000120953.2	602	1	-17	0	-17	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACATGATATTTGTAAAA	7714	False	NA	NA	False	NA	NA	NA	32296049	32296668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32296000_32296700
ES_00034588	chr2	+	759	3	FSM	ENSMUSG00000046854.17	ENSMUST00000124980.2	778	3	14	5	14	-4	multi-exon	FALSE	canonical	2	2	junction_1	1.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTTACAGACCACGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	32469952	32473779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32470066_32470290_32470442_32473284
ES_00034590	chr2	+	2361	7	FSM	ENSMUSG00000026811.19	ENSMUST00000183538.8	2361	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	29.5390513651938	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	3383	False	NA	7	True	AATAAA	-16	NA	32497051	32510818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32497124_32498053_32498109_32499237_32499329_32502235_32502416_32504792_32505181_32508508_32508617_32509351
ES_00034591	chr2	+	3021	14	FSM	ENSMUSG00000026814.17	ENSMUST00000113272.8	3021	14	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	25.0613448545197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCCCCTCTGGGTTGT	555	False	NA	25	True	AATAAA	-13	NA	32536606	32572130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32537037_32547527_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207
ES_00034593	chr2	+	2586	11	FSM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	0	521	0	-3	multi-exon	FALSE	canonical	1	2	junction_6	3.98622628559895	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTCTGTCCCATGAGG	1545	False	NA	NA	False	AATAAA	-12	NA	32617717	32645003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_32617819_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
ES_00034594	chr2	+	3339	5	FSM	ENSMUSG00000004105.9	ENSMUST00000004208.7	3339	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.11803398874989	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCCACACTGTGTGCTG	NA	False	NA	NA	False	AATAAA	-21	NA	33106080	33137729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_33106466_33118186_33119045_33132211_33132406_33133690_33133962_33136098
ES_00034595	chr2	+	613	1	FSM	ENSMUSG00000082844.2	ENSMUST00000120467.2	267	1	45	-391	45	391	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTGTGCTCTCAGCA	6202	False	NA	NA	False	AATAAA	-21	NA	33213227	33213840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_33213200_33213800
ES_00034596	chr2	+	374	2	FSM	ENSMUSG00000086939.2	ENSMUST00000134014.2	390	2	10	6	10	-6	multi-exon	TRUE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATTTTGATAGATTAT	NA	False	NA	NA	False	AATAAA	-10	NA	33379803	33393638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_33379998_33393458
ES_00034597	chr2	+	3596	13	NNC	ENSMUSG00000038696.15	novel	3111	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_2	73.4988662044071	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	34296867	34514961	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_34297267_34309119_34309278_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ES_00034599	chr2	+	1266	1	FSM	ENSMUSG00000075391.7	ENSMUST00000120770.2	555	1	-74	-637	-74	637	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTATTTGTAATTATGT	5814	False	NA	NA	False	TATAAA	-28	NA	35230346	35231612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_35230300_35231600
ES_00034600	chr2	+	6455	16	ISM	ENSMUSG00000026883.18	ENSMUST00000135741.8	4128	17	-37	5	-37	0	intron_retention	FALSE	canonical	3	33	junction_1	66.8343225196954	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGCCTGACTTGCCT	NA	False	NA	4	True	ATTAAA	-14	NA	35472814	35620999	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_35473062_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ES_00034601	chr2	+	6288	16	NNC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	-11367	0	intron_retention	FALSE	canonical	3	14	junction_1	70.1929404490857	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGCCTGACTTGCCT	4419	False	NA	4	True	ATTAAA	-14	NA	35500625	35620999	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_35500706_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ES_00034602	chr2	+	4724	15	NIC	ENSMUSG00000026883.18	novel	5580	17	NA	NA	15	-459	combination_of_known_junctions	FALSE	canonical	3	43	junction_9	70.8283711747299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGCCCCACCCTTGCCAA	NA	False	NA	NA	False	NA	NA	NA	35551376	35620540	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609930_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069_35618141_35619122
ES_00034603	chr2	+	461	4	FSM	ENSMUSG00000047250.14	ENSMUST00000144319.8	573	4	112	0	112	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCCAAAGACTGCCCCAC	NA	False	NA	NA	False	NA	NA	NA	36120679	36128075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_36120776_36127218_36127336_36127662_36127804_36127968
ES_00034604	chr2	+	348	1	FSM	ENSMUSG00000084124.2	ENSMUST00000120026.2	135	1	44	-257	44	257	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAATAAGAACACCTCAT	NA	False	NA	NA	False	NA	NA	NA	38380159	38380507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_38380200_38380500
ES_00034605	chr2	+	3130	10	FSM	ENSMUSG00000026749.12	ENSMUST00000112902.8	3147	10	17	0	17	0	multi-exon	FALSE	canonical	1	1	junction_2	93.6646236761514	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACAGTCTCCACTGGAC	NA	False	NA	2	True	AATAAA	-13	NA	38401696	38477492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_38401806_38440564_38440684_38447867_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
ES_00034610	chr2	+	445	1	Intergenic	novelGene_2244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACAGGTCATCATCCTC	NA	False	NA	NA	False	TATAAA	-35	NA	41877037	41877482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_41877000_41877500
ES_00034611	chr2	+	1142	2	Antisense	novelGene_ENSMUSG00000081999.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTTTTTATAGTCCA	NA	False	NA	NA	False	NA	NA	NA	41877037	41878881	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_41878011_41878712
ES_00034612	chr2	+	793	2	Intergenic	novelGene_2246	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACATTAGATAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	43085692	43086572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_43086229_43086315
ES_00034613	chr2	+	1021	5	Fusion	ENSMUSG00000086202.2_ENSMUSG00000086710.2	novel	635	4	NA	NA	-22	19797	intron_retention	FALSE	canonical	3	6	junction_3	6.33936116655298	57	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAACAAATCTTGAATTT	NA	False	NA	NA	False	AATAAA	-9	NA	45586594	45663120	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_45586642_45586810_45587155_45624962_45625071_45651624_45651718_45662691
ES_00034614	chr2	+	3498	5	FSM	ENSMUSG00000050447.16	ENSMUST00000112712.10	3495	5	-11	8	-11	-2	multi-exon	FALSE	canonical	1	1	junction_4	1.73205080756888	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTCGGCTTCTTCCTGCG	NA	False	NA	NA	False	AATAAA	-16	NA	49956429	50083573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_49956597_50055480_50055670_50063612_50063712_50078722_50078854_50080661
ES_00034615	chr2	+	1607	6	FSM	ENSMUSG00000053475.6	ENSMUST00000065927.6	1710	6	103	0	103	0	multi-exon	FALSE	canonical	1	1	junction_5	0.632455532033676	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTAGTTCTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	51928123	51946698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_51928282_51933740_51933879_51937442_51937605_51940854_51941084_51942315_51942357_51945819
ES_00034616	chr2	+	8127	36	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	14	4	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_16	120.947294981183	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTTTATTTTCTCAAA	NA	False	NA	-48	True	AATAAA	-30	NA	51962857	52012072	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983578_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ES_00034617	chr2	+	5606	27	NNC	ENSMUSG00000036053.18	novel	5508	27	NA	NA	-94	0	intron_retention	FALSE	canonical	0	0	junction_1	3.44805064557322	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGGTCATATGTTCTAATC	5321	False	NA	17	True	AATAAA	-16	NA	52747777	53023816	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_52748272_52904814_52904899_52926515_52926597_52932304_52932382_52941211_52941296_52944465_52944619_52958513_52958623_52962221_52962299_52963651_52963746_52987282_52987358_52991437_52991549_52993668_52993819_52995490_52995593_52997364_52997678_52998263_52998471_53004123_53004249_53004866_53005070_53006851_53007087_53008198_53008272_53008375_53008457_53009971_53010102_53012499_53012664_53013483_53013586_53016024_53016124_53016864_53016989_53020423_53020518_53021851
ES_00034618	chr2	+	5461	27	FSM	ENSMUSG00000036053.18	ENSMUST00000049483.14	5461	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.33108898802687	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGGTCATATGTTCTAATC	5415	False	NA	17	True	AATAAA	-16	NA	52747871	53023816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_52748272_52904814_52904899_52926515_52926597_52932304_52932382_52941211_52941296_52944465_52944619_52958513_52958623_52962221_52962299_52963651_52963746_52987282_52987358_52991437_52991549_52993668_52993819_52995490_52995593_52997364_52997678_52998263_52998471_53004123_53004249_53004866_53005070_53006851_53007087_53008198_53008268_53008375_53008457_53009971_53010102_53012499_53012664_53013483_53013586_53016024_53016124_53016864_53016989_53020423_53020471_53021851
ES_00034619	chr2	+	582	4	FSM	ENSMUSG00000026960.7	ENSMUST00000155517.2	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	228.30583776057	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAGATGTTTACTTCAT	NA	False	NA	NA	False	NA	NA	NA	53081737	53107546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_53081893_53084295_53084350_53092930_53093064_53107306
ES_00034620	chr2	+	689	2	FSM	ENSMUSG00000026839.18	ENSMUST00000137007.2	690	2	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATGTGTTTTCACTTT	NA	False	NA	NA	False	NA	NA	NA	58457329	58473793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_58457541_58473315
ES_00034621	chr2	+	225	2	Antisense	novelGene_ENSMUSG00000026987.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGGCTAGAGAGATGGT	NA	False	NA	NA	False	CATAAA	-11	NA	60015747	60027803	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_60015758_60027588
ES_00034622	chr2	+	2233	2	FSM	ENSMUSG00000026977.18	ENSMUST00000134905.2	2233	2	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAGATGCTAA	NA	False	NA	NA	False	NA	NA	NA	60067231	60073480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_60067271_60071286
ES_00034624	chr2	+	1371	5	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-20867	-4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	83.3377915474126	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGTGGTGGTATACCC	9019	False	NA	NA	False	NA	NA	NA	60221001	60242919	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_60221204_60224249_60224969_60241980_60242062_60242190_60242353_60242712
ES_00034625	chr2	+	2111	9	NIC	ENSMUSG00000064289.16	novel	2227	9	NA	NA	0	35	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	19.9874960913067	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTCTGAGATAAATAAATAA	NA	False	NA	NA	False	ATTAAA	-37	NA	61423507	61484469	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_61423553_61424340_61424546_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ES_00034626	chr2	+	560	5	FSM	ENSMUSG00000026914.16	ENSMUST00000125388.2	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	1783	junction_1	134.010027609877	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGTGACGTAGAGAG	2462	False	NA	-6	True	NA	NA	NA	61606921	61630418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ES_00034627	chr2	+	1280	1	FSM	ENSMUSG00000075312.5	ENSMUST00000121239.2	375	1	-54	-851	-54	851	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGTTTAATAAGTCC	NA	False	NA	NA	False	AATAAA	-45	NA	68384844	68386124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_68384800_68386100
ES_00034628	chr2	+	6875	11	NNC	ENSMUSG00000027035.11	novel	1279	11	NA	NA	2	4	at_least_one_novel_splicesite	TRUE	canonical	3	48	junction_8	6.89927532426414	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGTCCTTTATTGTAA	NA	False	NA	9	True	AATAAA	-22	NA	68691795	68944630	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943417_68943572
ES_00034629	chr2	+	201	1	Intergenic	novelGene_2266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTGAGGATCAGTTT	NA	False	NA	NA	False	NA	NA	NA	69468586	69468787	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69468600_69468800
ES_00034632	chr2	+	617	1	FSM	ENSMUSG00000083007.2	ENSMUST00000118359.2	625	1	4	4	4	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGCGCTGTTGGAGAGT	NA	False	NA	NA	False	AAAAAG	-40	NA	69596529	69597146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69596500_69597100
ES_00034634	chr2	+	3772	4	FSM	ENSMUSG00000042155.4	ENSMUST00000053087.4	4617	4	262	583	262	-583	multi-exon	FALSE	canonical	0	0	junction_1	4.78423336480244	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAATCTGTAACTTTAAT	5734	False	NA	NA	False	AATAAA	-11	NA	69652975	69666412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_69652987_69654130_69655345_69659189_69659343_69664018
ES_00034636	chr2	+	892	3	ISM	ENSMUSG00000044308.18	ENSMUST00000131553.2	1801	8	4	21361	4	-21361	5prime_fragment	FALSE	canonical	3	25	junction_2	31	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTTTTGGAACTTAGTA	4387	False	NA	NA	False	AATAAA	-7	NA	69727650	69747642	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_+_69728184_69744757_69744898_69747423
ES_00034637	chr2	+	201	2	Intergenic	novelGene_2277	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTCATTTTAGGTTAC	NA	False	NA	NA	False	NA	NA	NA	70889737	70934929	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_70889764_70934754
ES_00034638	chr2	+	2492	16	NIC	ENSMUSG00000027012.16	novel	2548	18	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_15	136.596664999146	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042301	71093635	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ES_00034639	chr2	+	314	1	FSM	ENSMUSG00000082190.2	ENSMUST00000117993.2	473	1	182	-23	182	23	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACCAGCACCAGGAAAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	71150308	71150622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_71150300_71150600
ES_00034640	chr2	+	505	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	9787	-6	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	13	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGATAGCTATCAAGACTCG	NA	False	NA	-1	True	ATTAAA	-12	NA	71559547	71561304	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_71559686_71560693_71560778_71561021
ES_00034641	chr2	+	598	2	FSM	ENSMUSG00000055612.16	ENSMUST00000130730.2	598	2	0	0	0	0	multi-exon	FALSE	canonical	3	1215	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGGTAAGTGGCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	72313907	72315087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72314361_72314942
ES_00034642	chr2	+	1340	1	FSM	ENSMUSG00000082455.4	ENSMUST00000120830.2	528	1	-784	-28	-784	28	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	72946307	72947647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_72946300_72947600
ES_00034643	chr2	+	212	1	Intergenic	novelGene_2282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAACACTCTTATCTATCA	NA	False	NA	NA	False	NA	NA	NA	73727483	73727695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_73727500_73727700
ES_00034644	chr2	+	703	2	FSM	ENSMUSG00000050368.5	ENSMUST00000061745.5	1816	2	607	506	607	-506	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGCACGTGTAATTTAT	NA	False	NA	NA	False	NA	NA	NA	74522874	74524943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_74523069_74524434
ES_00034645	chr2	+	728	3	FSM	ENSMUSG00000027099.10	ENSMUST00000129284.2	728	3	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTAACTTTTGAAATATG	1304	False	NA	NA	False	TTTAAA	-4	NA	74699324	74706848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_74699774_74700751_74700829_74706646
ES_00034646	chr2	+	1387	2	FSM	ENSMUSG00000087222.2	ENSMUST00000135244.2	1427	2	40	0	40	0	multi-exon	FALSE	canonical	1	1	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCCATAGAGAGACTGTG	NA	False	NA	NA	False	NA	NA	NA	75535153	75540368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_75535839_75539666
ES_00034647	chr2	+	3375	25	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_11	10.767427733679	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTATAGCTACGCGT	NA	False	NA	6	True	AATAAA	-17	NA	76236846	76426389	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ES_00034648	chr2	+	437	3	Intergenic	novelGene_2286	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	0.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCCTCCACGACCTTTA	NA	False	NA	NA	False	ATTAAA	-17	NA	77174324	77186352	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_77174403_77175198_77175307_77186101
ES_00034650	chr2	+	2515	1	FSM	ENSMUSG00000096729.2	ENSMUST00000099951.3	2493	1	92	-114	92	114	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAGAACGGTGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	83797748	83800263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_83797700_83800300
ES_00034652	chr2	+	3081	3	Fusion	ENSMUSG00000096484.2_ENSMUSG00000096337.2_ENSMUSG00000095824.2	novel	732	2	NA	NA	0	588	intron_retention	TRUE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATTGTCCTTAGCAGG	NA	False	NA	NA	False	AATAAA	-29	NA	83803466	83818167	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_83804382_83810191_83811195_83817004
ES_00034653	chr2	+	3049	4	NIC	ENSMUSG00000086598.10	novel	3052	5	NA	NA	-112	-3	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	3.2659863237109	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGATTTGCTTTGTGGTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	84489777	84499121	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_84489938_84490440_84490526_84491774_84491945_84496487
ES_00034655	chr2	+	5676	12	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	44	1	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	65.513735863381	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCCAGGATTGTGGTGT	NA	False	NA	9	True	AATAAA	-18	NA	84878442	84903389	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_84878480_84881208_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ES_00034656	chr2	+	1214	4	FSM	ENSMUSG00000033955.14	ENSMUST00000148682.2	1214	4	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_3	8.64098759787715	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAGCCAGGGGTCACAC	NA	False	NA	NA	False	GGGGCT	-43	NA	84881236	84888901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84881318_84882268_84882900_84884626_84884697_84888469
ES_00034657	chr2	+	4799	8	FSM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	23.1913073088577	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGGATTGTGGTGTGTG	NA	False	NA	12	True	AATAAA	-21	NA	84888502	84903392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ES_00034658	chr2	+	237	1	Antisense	novelGene_ENSMUSG00000083267.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATCTCACCAGCCCT	NA	False	NA	NA	False	NA	NA	NA	87353590	87353827	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_87353600_87353800
ES_00034660	chr2	+	3472	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	0	-1129	0	64	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCTAAGAGGTACAGGCC	2335	False	NA	NA	False	AGTAAA	-42	NA	90735083	90742034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
ES_00034661	chr2	+	371	2	FSM	ENSMUSG00000005506.17	ENSMUST00000150546.2	350	2	-21	0	-21	0	multi-exon	FALSE	canonical	3	194	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGTTGGATTTCCTTCC	2281	False	NA	NA	False	NA	NA	NA	90770705	90818099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90770987_90818009
ES_00034662	chr2	+	7806	15	FSM	ENSMUSG00000005506.17	ENSMUST00000177642.8	7806	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	260.488600949235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90770987_90784633_90784687_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ES_00034663	chr2	+	7851	13	FSM	ENSMUSG00000005506.17	ENSMUST00000068726.13	7851	13	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_9	166.622056529807	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	2317	False	NA	15	True	ATTAAA	-15	NA	90770741	90849842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582
ES_00034664	chr2	+	7598	14	NIC	ENSMUSG00000005506.17	novel	7614	14	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	151	junction_13	182.048826274516	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGAAGAACTGTTTGTCT	2457	False	NA	5	True	ATTAAA	-5	NA	90770881	90849832	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ES_00034665	chr2	+	7620	14	FSM	ENSMUSG00000005506.17	ENSMUST00000068747.14	7614	14	-6	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	169.345415711454	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	2457	False	NA	15	True	ATTAAA	-15	NA	90770881	90849842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ES_00034666	chr2	+	7755	13	FSM	ENSMUSG00000005506.17	ENSMUST00000111452.8	7800	13	45	0	45	0	multi-exon	FALSE	canonical	3	193	junction_1	163.939944966306	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	1696	False	NA	15	True	ATTAAA	-15	NA	90818009	90849842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582
ES_00034671	chr2	+	1140	4	NNC	ENSMUSG00000002111.9	novel	544	4	NA	NA	8999	-4	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	12.9614813968157	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGAGAAGTGTCTCATT	NA	False	NA	17	True	AGTAAA	-18	NA	90936123	90946097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_90936229_90943599_90943791_90944589_90944756_90945419
ES_00034672	chr2	+	7926	38	FSM	ENSMUSG00000027253.16	ENSMUST00000028689.4	7926	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	9.67152258747147	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTGTAATGATTTTAAC	NA	False	NA	NA	False	NA	NA	NA	91287855	91344124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_91288098_91301473_91301621_91303501_91303619_91303902_91304017_91304252_91304370_91304692_91304822_91305050_91305171_91305527_91305654_91306610_91306737_91306928_91307064_91307442_91307569_91307865_91308097_91308854_91309012_91310657_91310876_91311037_91311215_91312202_91312326_91316098_91316308_91316432_91316515_91317383_91317490_91318776_91318979_91320702_91320893_91320979_91321112_91322301_91322443_91322689_91322777_91322881_91323054_91324086_91324250_91324365_91324592_91325101_91325406_91327234_91327454_91327600_91327736_91328684_91328794_91331333_91331479_91331725_91331840_91332255_91332392_91335937_91336006_91336345_91336434_91338813_91338956_91341773
ES_00034673	chr2	+	2868	14	NNC	ENSMUSG00000027247.17	novel	2866	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	98.2376661635161	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480567	91502671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_91480598_91482108_91482169_91484387_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ES_00034674	chr2	+	1138	11	FSM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	29	0	29	0	multi-exon	FALSE	canonical	2	7	junction_1	67.8416538713496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTGGCTCTGTGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	92205049	92211561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_92205167_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ES_00034675	chr2	+	1685	4	FSM	ENSMUSG00000032698.16	ENSMUST00000111143.8	1654	4	-31	0	-31	0	multi-exon	FALSE	canonical	1	2	junction_1	5.71547606649408	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATGACAAGCTGAAAT	4450	False	NA	NA	False	ATTAAA	-27	NA	103800442	103812200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_103800711_103800837_103801058_103806349_103806566_103811219
ES_00034676	chr2	+	1225	1	FSM	ENSMUSG00000081721.4	ENSMUST00000120886.2	1002	1	-58	-165	-58	165	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGCTGCACCCACAAA	8500	False	NA	NA	False	NA	NA	NA	104121860	104123085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104121900_104123100
ES_00034677	chr2	+	1451	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	-24	-7046	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	7.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAATTTTTTTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	104389483	104391349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_104389756_104390068_104390321_104390422
ES_00034678	chr2	+	405	2	FSM	ENSMUSG00000027176.9	ENSMUST00000131761.2	421	2	0	16	0	-16	multi-exon	FALSE	canonical	3	202	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTCATTGTACACACT	NA	False	NA	NA	False	NA	NA	NA	104493482	104494508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_104493793_104494413
ES_00034681	chr2	+	1591	8	FSM	ENSMUSG00000005102.14	ENSMUST00000110869.2	1715	8	124	0	124	0	multi-exon	FALSE	canonical	3	67	junction_7	14.9174599796647	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATGAAAATTTACAAATT	NA	False	NA	NA	False	AATAAA	-10	NA	118269446	118282771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118269552_118271642_118271701_118272495_118272576_118273605_118273708_118276740_118276795_118278756_118278994_118280790_118280867_118281892
ES_00034683	chr2	+	269	1	FSM	ENSMUSG00000081413.4	ENSMUST00000121613.2	269	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCAGATTTGTCCTCCT	8665	False	NA	NA	False	TTTAAA	-13	NA	118838689	118838958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_118838700_118839000
ES_00034685	chr2	+	209	1	FSM	ENSMUSG00000081572.4	ENSMUST00000122061.2	745	1	30	506	30	-506	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCCCTGTTACAGACTAA	9887	False	NA	NA	False	NA	NA	NA	119018027	119018236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_119018000_119018200
ES_00034686	chr2	+	201	2	Antisense	novelGene_ENSMUSG00000072980.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGCATCCAATGTACAC	NA	False	NA	NA	False	NA	NA	NA	119413493	119440408	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_119413542_119440255
ES_00034692	chr2	+	4773	24	FSM	ENSMUSG00000062646.13	ENSMUST00000135074.2	4780	24	0	7	0	-7	multi-exon	FALSE	canonical	0	0	junction_16	3.61680597271051	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTTTGGTCATGGT	NA	False	NA	3	True	NA	NA	NA	120235248	120292174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505_120252686_120254179_120254226_120258210_120258278_120259281_120259379_120261035_120261217_120261421_120261576_120264102_120264339_120265743_120265871_120267102_120267183_120269780_120269925_120271984_120272082_120274618_120274721_120276779_120277024_120278868_120278934_120281301_120281379_120283073_120283149_120286473_120286588_120287688_120287802_120288523_120288628_120290296
ES_00034693	chr2	+	2658	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398171	120431736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ES_00034699	chr2	+	886	3	FSM	ENSMUSG00000074884.13	ENSMUST00000110615.8	876	3	-10	0	0	0	multi-exon	FALSE	canonical	1	56	junction_2	2937.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCCCCACACCGACCTT	NA	False	NA	NA	False	NA	NA	NA	121279848	121281771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121279923_121280455_121280565_121281068
ES_00034700	chr2	+	386	1	FSM	ENSMUSG00000081967.2	ENSMUST00000121934.2	386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGAAATGTGTCACCCT	5621	False	NA	-84	True	NA	NA	NA	121311609	121311995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121311600_121312000
ES_00034702	chr2	+	4192	13	FSM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	0	-1851	0	0	multi-exon	FALSE	canonical	3	27	junction_1	9.89107341663853	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121340328	121375341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781
ES_00034703	chr2	+	4004	10	NNC	ENSMUSG00000060227.16	novel	4032	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	90	junction_8	48.2649580217315	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	121697450	121766686	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958_121765678_121765705
ES_00034704	chr2	+	3784	13	FSM	ENSMUSG00000033411.17	ENSMUST00000140570.8	3543	13	-468	227	11	0	multi-exon	FALSE	canonical	3	16	junction_2	109.645134664314	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATAATCATGGCAG	NA	False	NA	NA	False	NA	NA	NA	121786492	121842869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
ES_00034705	chr2	+	2335	7	NIC	ENSMUSG00000118663.1	novel	2347	8	NA	NA	2	183	combination_of_known_junctions	FALSE	canonical	3	7	junction_4	3.21455025366432	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCAGGAGAGTTATTT	NA	False	NA	21	True	AATAAA	-17	NA	122461121	122474933	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_122462241_122462999_122463186_122466452_122466612_122469669_122469880_122472613_122472745_122473758_122473885_122474529
ES_00034706	chr2	+	362	2	FSM	ENSMUSG00000005804.15	ENSMUST00000146449.2	354	2	-8	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCATTGGTTCATATGAG	8285	False	NA	NA	False	NA	NA	NA	122580438	122581079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_122580625_122580903
ES_00034707	chr2	+	1454	8	NIC	ENSMUSG00000035183.15	novel	1954	9	NA	NA	5	-288	combination_of_known_splicesites	FALSE	canonical	3	4	junction_6	24.7608974154074	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCTAACACTTAATTACTA	NA	False	NA	6	True	AATAAA	-19	NA	124910048	124930309	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124929339_124929442_124929883
ES_00034708	chr2	+	1137	8	NNC	ENSMUSG00000001999.16	novel	1160	8	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	61.7962418776747	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2229	False	NA	NA	False	AATAAA	-20	NA	126912604	126939004	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_126912646_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ES_00034709	chr2	+	4458	3	FSM	ENSMUSG00000034850.16	ENSMUST00000174288.2	842	3	-29	-3587	-25	1	multi-exon	FALSE	canonical	2	7	junction_1	67.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCCGGTCTACTCTT	2370	False	NA	11	True	AATAAA	-16	NA	127089863	127103028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127090005_127097924_127098090_127098876
ES_00034710	chr2	+	2563	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	54.5121842462079	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5004	False	NA	14	True	AATAAA	-25	NA	127267121	127278012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_127267142_127269222_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ES_00034711	chr2	+	5037	4	FSM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	-1	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	11.2644968324772	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTGTTCGATGTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	127967957	128004467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_127968173_127970539_127970935_127989004_127989115_128000150
ES_00034712	chr2	+	220	2	Intergenic	novelGene_2365	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAGACATTTAATTGG	NA	False	NA	NA	False	NA	NA	NA	128857024	128861511	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_128857053_128861319
ES_00034713	chr2	+	1053	2	FSM	ENSMUSG00000027394.14	ENSMUST00000144730.2	1053	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTTATTTCTAATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	128907904	128910025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_128908224_128909291
ES_00034715	chr2	+	525	4	FSM	ENSMUSG00000037902.19	ENSMUST00000136153.8	521	4	-4	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	9.20144916122817	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTTGCCGGTGGGACC	NA	False	NA	NA	False	NA	NA	NA	129434754	129450915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_129434996_129435523_129435615_129450052_129450154_129450823
ES_00034718	chr2	+	315	1	FSM	ENSMUSG00000082985.3	ENSMUST00000120139.3	833	1	31	487	31	-487	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCAACGCTGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	130242387	130242702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_130242400_130242700
ES_00034722	chr2	+	1402	3	NNC	ENSMUSG00000068264.12	novel	1101	4	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_1	19.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTTGTCCTCTTTTTGT	NA	False	NA	8	True	ATTAAA	-14	NA	131052292	131055431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_131052419_131053182_131053394_131054366
ES_00034724	chr2	+	8196	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	-28	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	118.061161563922	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	5309	False	NA	NA	False	AATAAA	-17	NA	132105132	132153970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
ES_00034725	chr2	+	3771	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	-26	2299	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	118.061161563922	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTCACTTGTTGTGT	5311	False	NA	26	True	AATAAA	-31	NA	132105134	132149547	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147715_132147849
ES_00034726	chr2	+	7787	14	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3444	-168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.186787055044	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTTTCACCACGTCTGA	NA	False	NA	NA	False	NA	NA	NA	132131302	132153802	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
ES_00034727	chr2	+	1278	4	NNC	ENSMUSG00000044991.11	novel	1076	3	NA	NA	-90	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	15.1070255914995	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528760	132592975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_132528902_132533869_132534052_132551435_132551548_132592132
ES_00034728	chr2	+	586	1	FSM	ENSMUSG00000082399.2	ENSMUST00000118248.2	480	1	22	-128	22	128	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAGAAAATGCAAAG	NA	False	NA	NA	False	AATAAA	-28	NA	134645890	134646476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_134645900_134646500
ES_00034729	chr2	+	5529	38	NIC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	120	-12	combination_of_known_junctions	TRUE	canonical	1	4	junction_37	25.1744243933288	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAACACATGTAACAT	NA	False	NA	-10	True	AATAAA	-2	NA	135501050	135856501	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_135501375_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135854885
ES_00034730	chr2	+	5546	40	NIC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	188	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_20	29.7006321088628	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAACATCTACCAGAGTAT	NA	False	NA	2	True	AATAAA	-14	NA	135501118	135856513	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_135501375_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135806971_135807008_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
ES_00034731	chr2	+	2556	6	FSM	ENSMUSG00000027281.17	ENSMUST00000028737.13	2556	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	10.0598210719674	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGGCTAAGGTCATATTC	9361	False	NA	NA	False	AATAGA	-17	NA	136733137	136911569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_136733310_136747462_136747521_136842103_136842194_136885919_136885998_136908049_136908151_136909512
ES_00034732	chr2	+	4906	8	FSM	ENSMUSG00000027281.17	ENSMUST00000135260.8	4906	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	8.59995253902424	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTGTTGTGCAATTT	9751	False	NA	15	True	AATAAA	-23	NA	136733527	136913870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_136733582_136734203_136734282_136747462_136747521_136842103_136842194_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ES_00034733	chr2	+	650	5	FSM	ENSMUSG00000008333.13	ENSMUST00000126763.3	636	5	-14	0	-14	0	multi-exon	FALSE	canonical	1	1	junction_1	449.346469887102	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTTTCCCTCCACAGT	2066	False	NA	NA	False	NA	NA	NA	142905036	142911344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_142905233_142906461_142906551_142907095_142907269_142910180_142910322_142911293
ES_00034734	chr2	+	4035	12	NIC	ENSMUSG00000027425.19	novel	3801	11	NA	NA	-46	0	intron_retention	FALSE	canonical	1	11	junction_2	132.928800926295	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCACTCAGCTTGTCTT	NA	False	NA	39	True	AATAAA	-45	NA	144210856	144249595	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_144211078_144213524_144213714_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
ES_00034735	chr2	+	566	3	FSM	ENSMUSG00000027425.19	ENSMUST00000139812.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	1	24	junction_2	48.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144245997	144249596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_144246110_144248542_144248632_144249231
ES_00034737	chr2	+	2733	20	NNC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	132.014898848598	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398192	144432669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_144398245_144401137_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ES_00034738	chr2	+	4650	13	NIC	ENSMUSG00000001768.17	novel	1668	5	NA	NA	132	-1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	3.53847895759369	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGTTGTCTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	145517418	145729535	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_145517505_145554374_145554499_145628241_145628335_145664184_145664286_145686630_145686824_145690684_145690797_145693098_145693172_145700360_145700453_145701933_145703095_145718310_145718617_145720763_145720896_145725241_145725406_145727522
ES_00034739	chr2	+	4066	6	NNC	ENSMUSG00000027439.10	novel	4232	6	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	26.4423902096615	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	527	False	NA	NA	False	AATAAA	-18	NA	148523098	148534869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_148523136_148525523_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
ES_00034740	chr2	+	6785	5	Fusion	ENSMUSG00000079008.3_ENSMUSG00000079009.9	novel	1728	4	NA	NA	0	3511	multi-exon	TRUE	non_canonical	0	0	junction_4	28.0746772020624	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCATGAATGCATTTTGA	NA	False	NA	NA	False	NA	NA	NA	150023674	150115731	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150034743_150110217
ES_00034741	chr2	+	1508	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3311	2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.04285397107271	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTCATGAAAGTTCCTG	NA	False	NA	21	True	AATAAA	-21	NA	151417852	151431927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_151418043_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ES_00034742	chr2	+	1270	2	FSM	ENSMUSG00000044364.6	ENSMUST00000060196.3	1435	2	163	2	-140	-2	multi-exon	FALSE	canonical	1	1	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGAGGCTACTTGGCAT	108	False	NA	NA	False	NA	NA	NA	151544090	151549228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_151544366_151548233
ES_00034743	chr2	+	2595	6	NNC	ENSMUSG00000027463.15	novel	2590	5	NA	NA	-1453	-21	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	40.4702359765791	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGGCAAAGTCCCATGAC	NA	False	NA	-39	True	NA	NA	NA	151840331	151851121	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_151840364_151841790_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ES_00034744	chr2	+	815	1	NIC	ENSMUSG00000060257.3	novel	3395	2	NA	NA	11031	-2428	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCGGGGGCGACGGCGG	NA	False	NA	NA	False	NA	NA	NA	151934479	151935294	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_151934500_151935300
ES_00034746	chr2	+	202	2	Intergenic	novelGene_2393	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	45	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATCTCACCAGCCCAATC	1559	False	NA	NA	False	NA	NA	NA	153149046	153202392	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_153149073_153202216
ES_00034747	chr2	+	6079	10	NIC	ENSMUSG00000038533.16	novel	6069	11	NA	NA	-140	0	combination_of_known_junctions	TRUE	canonical	3	63	junction_1	140.841474671541	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACCAGACCTGGGGAA	5163	False	NA	37	True	AATAAA	-27	NA	154278260	154381276	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_154278557_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
ES_00034748	chr2	+	4223	12	NNC	ENSMUSG00000038533.16	novel	6080	11	NA	NA	-140	61693	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	184.148386088973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGTAGACCAGACTGGC	5163	False	NA	NA	False	NA	NA	NA	154278260	154442969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373144_154373333_154376803_154379233_154442922
ES_00034749	chr2	+	3274	15	FSM	ENSMUSG00000059842.13	ENSMUST00000081926.13	3299	15	25	0	25	0	multi-exon	FALSE	canonical	2	3	junction_5	3.22062866217014	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGAGTCTCAGAGATTC	5747	False	NA	25	True	AATAAA	-35	NA	154455241	154488741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_154455323_154463672_154463784_154466774_154466972_154468697_154468848_154469807_154470054_154470719_154470916_154472328_154472420_154474198_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
ES_00034750	chr2	+	211	2	Antisense	novelGene_ENSMUSG00000083975.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTGTGTTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	154501884	154598426	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_154501920_154598250
ES_00034751	chr2	+	998	2	Genic_Genomic	ENSMUSG00000082064.4	novel	891	1	NA	NA	-17	97979	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTCTCAAAAAACCAAAACAC	9399	False	NA	NA	False	NA	NA	NA	154545711	154644598	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_154546685_154644573
ES_00034752	chr2	+	2145	19	FSM	ENSMUSG00000027605.19	ENSMUST00000103142.12	2145	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	21.9854750030813	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACTCTTGTCCAGGAT	2166	False	NA	NA	False	NA	NA	NA	155360026	155404000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155393109_155393149_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
ES_00034753	chr2	+	555	2	FSM	ENSMUSG00000085317.2	ENSMUST00000155884.2	674	2	119	0	119	0	multi-exon	FALSE	canonical	3	8	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGGAACTGGACGGCGGC	NA	False	NA	NA	False	NA	NA	NA	155433919	155434757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155434089_155434371
ES_00034754	chr2	+	7973	33	NNC	ENSMUSG00000038241.17	novel	7919	34	NA	NA	0	0	intron_retention	FALSE	canonical	2	5	junction_7	24.5109788857463	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGGCTGCTGTCTCTG	NA	False	NA	12	True	AATAAA	-19	NA	155798491	155840820	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807490_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ES_00034756	chr2	+	1494	12	FSM	ENSMUSG00000038180.12	ENSMUST00000038860.12	1473	12	-21	0	-4	0	multi-exon	FALSE	canonical	1	2	junction_1	5.51781487472492	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907142	155911421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_155907592_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
ES_00034757	chr2	+	296	2	Antisense	novelGene_ENSMUSG00002075083.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATGGGATCTGATGCCC	NA	False	NA	NA	False	NA	NA	NA	156239686	156253538	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_156239736_156253291
ES_00034758	chr2	+	6103	22	FSM	ENSMUSG00000027624.21	ENSMUST00000029155.16	6521	22	418	0	418	0	multi-exon	FALSE	canonical	1	1	junction_1	53.1041845975316	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGGACTCCCTCAGCC	5264	False	NA	11	True	AATAAA	-26	NA	156317871	156385132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_156317927_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156353704_156353741_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ES_00034759	chr2	+	207	2	Antisense	novelGene_ENSMUSG00000027641.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	97	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATCCTAACAAAAAGGGT	NA	False	NA	NA	False	NA	NA	NA	156954084	157010292	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_+_156954140_157010140
ES_00034760	chr2	+	913	1	FSM	ENSMUSG00000084113.2	ENSMUST00000121195.2	360	1	-54	-499	-54	499	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCTTCTGGCCTATACA	NA	False	NA	NA	False	NA	NA	NA	157010685	157011598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_157010700_157011600
ES_00034761	chr2	+	1082	4	NNC	ENSMUSG00000063019.6	novel	1107	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	30	junction_1	200.150498930735	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_157209561_157220971_157221175_157237829_157238611_157238632
ES_00034762	chr2	+	2388	15	FSM	ENSMUSG00000016024.10	ENSMUST00000016168.9	2525	15	93	44	-26	-44	multi-exon	FALSE	canonical	1	2	junction_3	1.75691055374984	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCCTTTGATCAGACT	NA	False	NA	NA	False	NA	NA	NA	158148505	158174728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_158148714_158150600_158150716_158151520_158151650_158155392_158155549_158156072_158156137_158159456_158159521_158161591_158161684_158162183_158162361_158163974_158164035_158166428_158166597_158167626_158167695_158168147_158168191_158169436_158169501_158170265_158170343_158173825
ES_00034764	chr2	+	235	2	Genic_Genomic	ENSMUSG00000037754.14	novel	6685	12	NA	NA	4814	-1302	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACTTCTCTTCAAATTAA	NA	False	NA	NA	False	NA	NA	NA	158542868	158606952	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_158542891_158606739
ES_00034765	chr2	+	524	2	FSM	ENSMUSG00000078955.4	ENSMUST00000128681.2	575	2	51	0	51	0	multi-exon	FALSE	canonical	3	10	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGGCTGTTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	160425327	160427111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_160425531_160426790
ES_00034767	chr2	+	3231	20	FSM	ENSMUSG00000027412.13	ENSMUST00000109457.3	3215	20	-16	0	-16	0	multi-exon	TRUE	canonical	1	1	junction_11	11.783363078059	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCTAGGCCATTGGCTC	NA	False	NA	NA	False	ATTAAA	-30	NA	160730074	160747712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743547_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
ES_00034768	chr2	+	3433	20	NNC	ENSMUSG00000027412.13	novel	3458	20	NA	NA	6	-20	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	11.4427395359959	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTTGCAGGGTTCGCT	NA	False	NA	NA	False	ATTAAA	-10	NA	160730096	160747692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_160730138_160733641_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743577_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
ES_00034769	chr2	+	988	3	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-46	2657	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	8.5	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232686	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162233118_162233218_162233320_162238066
ES_00034770	chr2	+	926	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-20	2657	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_2	13.5973853695808	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232712	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066
ES_00034771	chr2	+	719	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	11	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	33.6386021641143	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232743	162238522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_162232958_162233218_162233320_162238066_162238330_162238381
ES_00034773	chr2	+	1144	6	FSM	ENSMUSG00000017943.16	ENSMUST00000018087.13	2220	6	60	1016	5	7	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTGTGCTGTGTGCTT	NA	False	NA	NA	False	AATACA	-38	NA	163280457	163295879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_163280646_163287953_163288147_163289418_163289593_163292485_163292584_163293420_163293536_163295503
ES_00034775	chr2	+	1879	5	NIC	ENSMUSG00000045503.17	novel	2001	6	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	127.481371188107	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAATCCTTTGGCTTGTA	8603	False	NA	NA	False	CATAAA	-10	NA	164298880	164307424	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_164298950_164302682_164303041_164303212_164303450_164305220_164305289_164306277
ES_00034776	chr2	+	2016	6	FSM	ENSMUSG00000045503.17	ENSMUST00000109352.8	2001	6	-15	0	-3	0	multi-exon	FALSE	canonical	1	1	junction_2	142.338469852672	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCTTGTACTTAAGTC	8603	False	NA	NA	False	CATAAA	-18	NA	164298880	164307432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164298950_164299888_164300018_164302682_164303041_164303212_164303450_164305220_164305289_164306277
ES_00034777	chr2	+	1415	6	FSM	ENSMUSG00000045503.17	ENSMUST00000138268.8	1618	6	0	203	0	-203	multi-exon	FALSE	canonical	2	2	junction_4	131.788315111773	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTCTTATTATAAATTT	NA	False	NA	NA	False	TATAAA	-33	NA	164302919	164316184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164303041_164303212_164303450_164305220_164305289_164309067_164309248_164314057_164314243_164315560
ES_00034778	chr2	+	1439	4	NNC	ENSMUSG00000045503.17	novel	1606	4	NA	NA	12	-163	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	143.710356852478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTGTGGCAGGAGTT	NA	False	NA	11	True	NA	NA	NA	164302931	164307265	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_164303078_164303212_164303450_164305220_164305289_164306277
ES_00034779	chr2	+	2512	15	FSM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	22	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_1	269.721332005415	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTAAAGGGGTTTCGGGA	NA	False	NA	NA	False	AATATA	-18	NA	164674814	164681939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164675117_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ES_00034780	chr2	+	436	2	FSM	ENSMUSG00000017760.17	ENSMUST00000146525.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	3	800	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCTGGTGAGTTGAC	NA	False	NA	NA	False	NA	NA	NA	164675726	164676341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164675771_164675949
ES_00034783	chr2	+	1103	2	FSM	ENSMUSG00000085436.2	ENSMUST00000129364.2	1127	2	24	0	24	0	multi-exon	FALSE	canonical	2	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTTTTTTGGATACGGT	7264	False	NA	NA	False	NA	NA	NA	164753297	164761873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164753671_164761143
ES_00034784	chr2	+	2474	2	FSM	ENSMUSG00000017740.18	ENSMUST00000137302.3	2996	2	519	3	519	-3	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCTTGATAGCCTGAAG	934	False	NA	NA	False	AATAAA	-13	NA	164839029	164841639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_164839164_164839299
ES_00034785	chr2	+	717	7	FSM	ENSMUSG00000027678.18	ENSMUST00000153507.2	717	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	114.626446434591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGGCTTTGAAGACAT	5003	False	NA	NA	False	AATATA	-28	NA	165889837	165894318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_165889876_165890374_165890476_165891157_165891238_165891985_165892161_165893231_165893418_165893533_165893627_165894274
ES_00034788	chr2	+	574	2	FSM	ENSMUSG00000074578.15	ENSMUST00000145859.4	560	2	-14	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTTGCAGGCTAGTG	NA	False	NA	NA	False	AATGAA	-12	NA	166905138	166906050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_166905218_166905555
ES_00034790	chr2	+	2058	12	NIC	ENSMUSG00000039463.15	novel	4521	17	NA	NA	0	-2221	combination_of_known_junctions	FALSE	canonical	3	10	junction_8	33.1121310570687	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTGTTTCATGTATGT	NA	False	NA	NA	False	TATAAA	-15	NA	167263657	167314335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167307260_167307378_167309604_167309688_167310883_167310996_167313301
ES_00034791	chr2	+	4292	10	FSM	ENSMUSG00000027540.14	ENSMUST00000126839.8	4292	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	47.9021636666927	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1105	False	NA	10	True	AATAAA	-16	NA	167774291	167821305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_167774477_167793875_167794000_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
ES_00034792	chr2	+	670	2	Intergenic	novelGene_2447	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCTTGTTTTTCTAGAT	NA	False	NA	NA	False	AATATA	-16	NA	168798188	168800168	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168798567_168799876
ES_00034793	chr2	+	3556	2	Genic_Genomic	ENSMUSG00000052368.3	novel	1361	1	NA	NA	-14007	0	multi-exon	FALSE	canonical	3	5	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGTTATTTCTCCAT	NA	False	NA	2	True	AATAAA	-14	NA	168847937	168863286	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_+_168848074_168859866
ES_00034794	chr2	+	426	2	Intergenic	novelGene_2448	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTGCTGTCCCGTGAGA	NA	False	NA	NA	False	AATAAA	-18	NA	168847950	168878544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168848074_168878241
ES_00034795	chr2	+	2707	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	217.157904658236	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGATAGAATCTCTGAAAGTC	NA	False	NA	8	True	AATAAA	-10	NA	172391512	172400525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399124
ES_00034796	chr2	+	2724	7	FSM	ENSMUSG00000028640.12	ENSMUST00000128406.8	2724	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	241.022589997056	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAATCTCTGAAAGTCTG	NA	False	NA	10	True	AATAAA	-12	NA	172392572	172400527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_172392764_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ES_00034797	chr2	+	1705	13	NNC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	8	97293	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	334.656903493049	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAACAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	172841924	172954825	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075_172857474_172954788
ES_00034804	chr2	+	4349	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	0	2017	intron_retention	FALSE	canonical	0	0	junction_3	496.400599874291	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAGGGCTATACAGAGA	NA	False	NA	NA	False	NA	NA	NA	174852033	174863058	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_174852115_174858430_174858558_174858749_174860386_174860553
ES_00034805	chr2	+	3060	5	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	2905	1859	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	432.81231498191	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCTGTTACAGCTA	NA	False	NA	14	True	NA	NA	NA	174855016	174862900	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_174855276_174858430_174858558_174858749_174858811_174859951_174860386_174860721
ES_00034812	chr2	+	928	5	Fusion	ENSMUSG00000078878.10_ENSMUSG00000095199.9	novel	461	4	NA	NA	-181103	74527	multi-exon	FALSE	non_canonical	0	0	junction_1	10.256095748383	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAACCTCGGGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	176031689	176488133	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176031801_176220781_176220909_176221114_176221176_176412300_176412637_176487840
ES_00034813	chr2	+	958	6	Fusion	ENSMUSG00000078878.10_ENSMUSG00000095199.9	novel	461	4	NA	NA	-181092	74568	multi-exon	TRUE	non_canonical	0	0	junction_1	9.68297474952816	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCCAGAACGGTTTCCG	NA	False	NA	NA	False	NA	NA	NA	176031700	176488174	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_+_176031801_176220781_176220909_176221114_176221176_176412300_176412591_176412842_176412889_176487840
ES_00034815	chr2	+	545	6	NNC	ENSMUSG00000078877.12	novel	1213	4	NA	NA	8	18674	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	28.649607327152	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTTGGTCATTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	176490412	176521690	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702_176500837_176521621
ES_00034816	chr2	+	5291	4	FSM	ENSMUSG00000078877.12	ENSMUST00000132883.8	2505	4	0	-2786	0	2786	multi-exon	FALSE	canonical	3	47	junction_1	17.0163320241336	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	176494025	176505802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_+_176494029_176499154_176499282_176499487_176499549_176500702
ES_00034820	chr2	+	579	3	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	53	34623	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	0	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGGTTGTTTGAAATA	NA	False	NA	NA	False	TTTAAA	-8	NA	177538941	177582200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177539047_177568633_177568718_177581810
ES_00034821	chr2	+	6205	6	NNC	ENSMUSG00000074519.12	novel	1413	4	NA	NA	0	4755	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	31.2192248462386	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	177665076	177680570	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_177665175_177673047_177673175_177673382_177673658_177674593_177674944_177675195_177679902_177679921
ES_00034823	chr2	+	1588	10	NNC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	49	junction_2	59.18353958682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712381	179727695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172_179727591_179727611
ES_00034824	chr2	+	1471	7	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	79.9249648107523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGATGTGTCTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	179713586	179727693	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
ES_00034825	chr2	+	358	6	NNC	ENSMUSG00000039001.13	novel	394	6	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	245	junction_1	2812.11261509919	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGCTTTTGCTGTTT	NA	False	NA	22	True	AATAAA	-23	NA	179899211	179900234	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179899251_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ES_00034826	chr2	+	362	6	NNC	ENSMUSG00000039001.13	novel	394	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	2882.90848970272	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899219	179900235	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_+_179899241_179899392_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ES_00034831	chr2	+	4242	36	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_31	64.100711575534	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961536	180998409	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
ES_00034833	chr2	-	6731	11	NNC	ENSMUSG00000039145.17	novel	1295	11	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	13.8740765458462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGGGTTGTCTGTTTCC	1173	False	NA	-1	True	AATAAA	-19	NA	5680861	5298269	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_5303913_5306302_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5680724
ES_00034834	chr2	-	320	3	FSM	ENSMUSG00000039128.14	ENSMUST00000138312.8	307	3	0	-13	0	13	multi-exon	FALSE	canonical	3	980	junction_1	52.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTCAATACTCAGCTCA	NA	False	NA	NA	False	AATAAA	-33	NA	5815633	5809627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5809845_5812241_5812318_5815606
ES_00034835	chr2	-	772	6	FSM	ENSMUSG00000039128.14	ENSMUST00000128467.4	772	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	388.054326093654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCATCATTGCTTTTTA	6462	False	NA	2	True	AATACA	-18	NA	5838489	5814365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466
ES_00034836	chr2	-	276	2	FSM	ENSMUSG00000039128.14	ENSMUST00000152998.2	276	2	0	0	0	0	multi-exon	FALSE	canonical	3	990	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATATGCCTGTCAAGGTT	NA	False	NA	NA	False	AATAAA	-11	NA	5827930	5825935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_5826194_5827912
ES_00034837	chr2	-	2061	4	FSM	ENSMUSG00000045319.14	ENSMUST00000054254.12	2061	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	15.3260852434302	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGCTTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	6134957	6104835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134706
ES_00034838	chr2	-	5337	13	ISM	ENSMUSG00000002107.19	ENSMUST00000114927.9	1721	14	315	-3766	0	0	3prime_fragment	FALSE	canonical	3	17	junction_6	6.18914820920905	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCTCTCTCTGCGTG	NA	False	NA	0	True	ATTAAA	-15	NA	6726424	6546679	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227
ES_00034839	chr2	-	218	1	FSM	ENSMUSG00002075987.1	ENSMUST00020182744.1	321	1	13	90	13	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTCATGGACTTTTCTT	4486	False	NA	NA	False	NA	NA	NA	7081212	7080994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_7081000_7081200
ES_00034840	chr2	-	1404	4	NNC	ENSMUSG00000082953.4	novel	953	4	NA	NA	-60	255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.294781011654	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGTTCACCAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	9047355	9045679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_9046638_9046719_9046821_9046926_9047004_9047087
ES_00034841	chr2	-	1244	4	NNC	ENSMUSG00000082953.4	novel	953	4	NA	NA	-60	255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.294781011654	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGTTCACCAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	9047355	9045679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_9046479_9046720_9046821_9046926_9047004_9047087
ES_00034843	chr2	-	629	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8809	44968	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.084336693988	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTGCCTGTCTGTCA	NA	False	NA	NA	False	AATAAA	-35	NA	10370043	10299125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_10299144_10344090_10344284_10346331_10346540_10350061_10350197_10369968
ES_00034844	chr2	-	4496	3	FSM	ENSMUSG00000037197.12	ENSMUST00000150369.2	663	3	-3697	-136	-7	132	multi-exon	FALSE	canonical	3	1364	junction_2	31.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGCCTTCACATTACGG	9360	False	NA	NA	False	NA	NA	NA	11595676	11590115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_11590540_11590644_11590718_11591677
ES_00034846	chr2	-	219	1	FSM	ENSMUSG00000080801.3	ENSMUST00000120962.3	1381	1	788	374	788	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAATATTCAGAAGGAGCC	NA	False	NA	NA	False	NA	NA	NA	12088015	12087796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_12087800_12088000
ES_00034847	chr2	-	1846	10	FSM	ENSMUSG00000026767.13	ENSMUST00000194533.6	1843	10	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_9	51.3963057710725	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCACTTTTACATTTGTGA	NA	False	NA	-19	True	AATAAA	-22	NA	12424259	12352070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12423969
ES_00034848	chr2	-	370	1	FSM	ENSMUSG00000102630.2	ENSMUST00000195409.2	1402	1	-33	1065	-33	-1065	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATTTTTCCTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	12363340	12362970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_12363000_12363300
ES_00034850	chr2	-	879	9	FSM	ENSMUSG00000026723.11	ENSMUST00000028055.11	879	9	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_8	11.8638105177047	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTTGCCACCAGAAGAAA	9047	False	NA	NA	False	NA	NA	NA	13549461	13520929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13549379
ES_00034851	chr2	-	711	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	90	0	4	0	multi-exon	FALSE	canonical	3	11	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATGGCATATTATAAT	NA	False	NA	NA	False	AATAAA	-16	NA	14078655	14075142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_14075592_14078393
ES_00034852	chr2	-	226	1	FSM	ENSMUSG00000083545.3	ENSMUST00000120155.3	141	1	0	-85	0	85	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTTTTTAAAAAAAAAATAAA	NA	False	NA	NA	False	AATGAA	-30	NA	14194574	14194348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_14194300_14194600
ES_00034853	chr2	-	5979	12	NNC	ENSMUSG00000026707.16	novel	2897	11	NA	NA	0	4921	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	19.5143515740434	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTATTTGTTTCCGTTT	978	False	NA	NA	False	NA	NA	NA	15054091	14995020	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_14997751_14999589_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
ES_00034854	chr2	-	2619	3	NNC	ENSMUSG00000054057.3	novel	426	2	NA	NA	36	1346	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1.5	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCTCCAAAGATCTGAT	NA	False	NA	NA	False	AATAAA	-38	NA	18033646	18028657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_18028742_18030639_18033050_18033521
ES_00034855	chr2	-	7433	25	NNC	ENSMUSG00000036591.17	novel	6339	26	NA	NA	46	5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	27.7943526937878	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTGGGAGCTTACTTG	NA	False	NA	-16	True	AATAAA	-20	NA	20973390	20852745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_20855609_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973294
ES_00034856	chr2	-	7274	25	NIC	ENSMUSG00000036591.17	novel	6339	26	NA	NA	3	5	combination_of_known_junctions	FALSE	canonical	2	15	junction_11	26.1419402812161	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTGGGAGCTTACTTG	NA	False	NA	-16	True	AATAAA	-20	NA	20973640	20852745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865922_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973294
ES_00034860	chr2	-	1951	2	Genic_Genomic	ENSMUSG00000083563.2	novel	1545	1	NA	NA	-298	33588	multi-exon	FALSE	non_canonical	0	0	junction_1	0	485	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATGGTTGGCATGTAGA	NA	False	NA	NA	False	NA	NA	NA	22479957	22444526	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_22444564_22478043
ES_00034862	chr2	-	3836	10	NIC	ENSMUSG00000026771.15	novel	1516	12	NA	NA	0	1955	combination_of_known_junctions	FALSE	canonical	2	5	junction_9	13.9717528085495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGATCTCACGAGAACCT	NA	False	NA	NA	False	NA	NA	NA	23461990	23398728	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23433208_23433337_23434757_23434910_23435164_23435287_23461854
ES_00034863	chr2	-	5999	27	NNC	ENSMUSG00000036893.18	novel	5953	27	NA	NA	142	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_26	56.510668207886	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCATTGTCTTTTTT	9772	False	NA	NA	False	AATAAA	-17	NA	24809444	24679939	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809316
ES_00034864	chr2	-	5921	27	NIC	ENSMUSG00000036893.18	novel	5953	27	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_23	58.7975666686458	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCATTGTCTTTTTT	9619	False	NA	NA	False	AATAAA	-17	NA	24809597	24679939	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777079_24809565
ES_00034865	chr2	-	5906	27	NIC	ENSMUSG00000036893.18	novel	5953	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_23	52.763749995707	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCATTGTCTTTTTT	9613	False	NA	NA	False	AATAAA	-17	NA	24809603	24679939	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753918_24767466_24767639_24774157_24774715_24777014_24777082_24809565
ES_00034866	chr2	-	1491	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	24.8445164976097	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9381	False	NA	-31	True	AATAAA	-17	NA	24825200	24815363	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24825039
ES_00034867	chr2	-	2554	14	NNC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	0	44863	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	170.955857827229	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTGAAGCC	NA	False	NA	NA	False	NA	NA	NA	25101393	25044860	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25044890_25089727_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ES_00034868	chr2	-	2555	14	NNC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	0	44863	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.955857827229	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTGAAGCC	NA	False	NA	NA	False	NA	NA	NA	25101393	25044860	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25044891_25089727_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ES_00034869	chr2	-	521	1	FSM	ENSMUSG00000089953.4	ENSMUST00000205192.2	1707	1	1183	3	1183	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGCTGGAACTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	25125518	25124997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25125000_25125500
ES_00034870	chr2	-	642	1	FSM	ENSMUSG00000036731.8	ENSMUST00000186719.2	909	1	427	-160	427	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTGTGACTGCTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	25129482	25128840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25128800_25129500
ES_00034871	chr2	-	2051	1	FSM	ENSMUSG00000115018.3	ENSMUST00000228627.3	2045	1	0	-6	0	6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCCATCCTCATTATT	NA	False	NA	NA	False	AATAAA	-25	NA	25136875	25134824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25134800_25136900
ES_00034872	chr2	-	3639	20	FSM	ENSMUSG00000026959.14	ENSMUST00000114317.10	3809	20	170	0	170	0	multi-exon	FALSE	canonical	0	0	junction_17	9.63172274842321	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9723	False	NA	-4	True	NA	NA	NA	25208937	25181192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25182141_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354_25201418_25203439_25203617_25206766_25206902_25208640
ES_00034873	chr2	-	4043	20	FSM	ENSMUSG00000026959.14	ENSMUST00000028335.13	4238	20	195	0	170	0	multi-exon	FALSE	canonical	0	0	junction_18	9.77673194552382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9723	False	NA	-4	True	NA	NA	NA	25208937	25181192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25182497_25184449_25184561_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25203439_25203617_25206766_25206902_25208640
ES_00034874	chr2	-	3932	19	FSM	ENSMUSG00000026959.14	ENSMUST00000114307.8	4127	19	195	0	170	0	multi-exon	FALSE	canonical	0	0	junction_17	10.1974337125077	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9723	False	NA	-4	True	NA	NA	NA	25208937	25181192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25182497_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25203439_25203617_25206766_25206902_25208640
ES_00034875	chr2	-	3014	8	FSM	ENSMUSG00000026958.14	ENSMUST00000139971.8	3017	8	0	3	0	0	multi-exon	FALSE	canonical	3	252	junction_5	30.9073665348966	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9029	False	NA	-17	True	AATAAA	-17	NA	25246343	25242301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25242579_25242697_25242769_25243164_25244306_25244479_25244647_25244752_25244835_25244904_25245966_25246040_25246155_25246242
ES_00034876	chr2	-	669	4	NNC	ENSMUSG00000036504.7	novel	937	3	NA	NA	-51	20010	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	366.051301808306	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCAGAAATTGAGGG	5495	False	NA	NA	False	NA	NA	NA	25464941	25443431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_25443459_25463441_25463712_25464199_25464325_25464694
ES_00034878	chr2	-	225	1	FSM	ENSMUSG00000082357.2	ENSMUST00000118484.2	637	1	238	174	238	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCGTCATAGCAGCCGACG	NA	False	NA	NA	False	NA	NA	NA	25884957	25884732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25884700_25885000
ES_00034879	chr2	-	6572	6	FSM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	105	-2	105	2	multi-exon	FALSE	canonical	2	3	junction_5	16.2775919595006	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGACCTTTGCTTGAC	1179	False	NA	2	True	AATAAA	-18	NA	25982084	25945544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_25981762
ES_00034880	chr2	-	1658	12	FSM	ENSMUSG00000026928.15	ENSMUST00000100303.10	1947	12	280	9	280	2	multi-exon	FALSE	canonical	2	2	junction_10	10.2723250122368	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGTTGGATATGCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	26249479	26242196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476_26247657_26247722_26248028_26248825_26248964_26249375
ES_00034881	chr2	-	4365	23	NNC	ENSMUSG00000036281.14	novel	4368	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_22	15.1671812948139	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATAGCCTTTGGTGATTT	NA	False	NA	-3	True	AATAAA	-31	NA	26270638	26252776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268645_26270560
ES_00034882	chr2	-	2103	9	FSM	ENSMUSG00000026927.18	ENSMUST00000114100.10	2099	9	0	-4	0	4	multi-exon	FALSE	canonical	3	6	junction_7	137.145907704167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTCTTGTCATTTACTC	NA	False	NA	1	True	AATAAA	-17	NA	26279303	26272809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278927_26279078_26279160
ES_00034883	chr2	-	2227	9	ISM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	51	-2	2	2	intron_retention	FALSE	canonical	3	96	junction_8	85.196739227508	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACTGTCTTGTCATTTAC	NA	False	NA	-1	True	AATAAA	-15	NA	26279277	26272811	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927
ES_00034885	chr2	-	980	9	FSM	ENSMUSG00000015790.17	ENSMUST00000183520.8	975	9	0	-5	0	3	multi-exon	FALSE	canonical	1	1	junction_2	113.594055192162	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTCTGAAACCGTTTT	NA	False	NA	0	True	AATAAA	-24	NA	26806312	26803389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_26803518_26803588_26803703_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ES_00034887	chr2	-	717	3	FSM	ENSMUSG00000087196.2	ENSMUST00000144634.2	655	3	14	-76	14	76	multi-exon	FALSE	canonical	0	0	junction_1	0.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCTTCTTATGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	28214048	28204951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28205334_28210115_28210292_28213889
ES_00034888	chr2	-	839	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	0	28333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.8957484240279	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACTTCCTGCTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	28356344	28323679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_28323707_28352012_28352447_28355148_28355228_28356045
ES_00034889	chr2	-	1012	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	-174	28333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.8957484240279	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACTTCCTGCTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	28356518	28323679	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_28323706_28352012_28352447_28355148_28355228_28356045
ES_00034890	chr2	-	2667	12	FSM	ENSMUSG00000026816.15	ENSMUST00000113889.9	2667	12	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	52.8098100077803	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGTTTGATGCCCT	NA	False	NA	-49	True	AATAAA	-22	NA	28473201	28456322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28457190_28457619_28457815_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
ES_00034891	chr2	-	1765	6	FSM	ENSMUSG00000079502.9	ENSMUST00000189711.7	1759	6	0	-6	0	2	multi-exon	FALSE	canonical	1	1	junction_1	2.03960780543711	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGTCTTTATTTGA	NA	False	NA	0	True	AATATA	-21	NA	28945051	28816958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_28817964_28846006_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
ES_00034893	chr2	-	3303	7	NIC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	126	junction_1	24.0791518861349	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677634	29666121	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ES_00034896	chr2	-	1639	4	FSM	ENSMUSG00000015335.17	ENSMUST00000148717.8	1483	4	0	-156	0	156	multi-exon	FALSE	canonical	3	614	junction_1	33.2966464777861	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGGTTACGTGGAGGCT	NA	False	NA	NA	False	ATTAAA	-15	NA	29983031	29980799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416
ES_00034898	chr2	-	2431	10	FSM	ENSMUSG00000039660.17	ENSMUST00000142669.8	2424	10	0	-7	0	7	multi-exon	FALSE	canonical	3	299	junction_5	42.1051007144365	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATGCTCACGTGACTGTA	NA	False	NA	-3	True	AATAAA	-40	NA	30068441	30063457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604
ES_00034899	chr2	-	202	2	Intergenic	novelGene_2197	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATTTTTTATTCAT	NA	False	NA	NA	False	NA	NA	NA	30100195	30091508	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_30091685_30100169
ES_00034900	chr2	-	577	3	FSM	ENSMUSG00000026860.17	ENSMUST00000142689.2	571	3	0	-6	0	0	multi-exon	FALSE	canonical	3	34	junction_2	151.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCTCCCTTAAGGCAGA	1527	False	NA	50	True	NA	NA	NA	30236113	30235146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30235440_30235710_30235952_30236070
ES_00034902	chr2	-	1607	6	FSM	ENSMUSG00000044320.15	ENSMUST00000138959.8	796	6	-706	-105	0	0	multi-exon	FALSE	canonical	1	1	junction_2	12.3190908755476	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGTGGGGAGTCAGGGCA	NA	False	NA	NA	False	NA	NA	NA	30691719	30685479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_30685818_30686120_30686224_30686412_30686579_30687879_30687993_30690735_30690829_30690925
ES_00034904	chr2	-	4548	2	FSM	ENSMUSG00000044627.12	ENSMUST00000127131.3	4511	2	-37	0	0	0	multi-exon	FALSE	canonical	3	3619	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGATAAAAGAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	32178080	32173292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32177658_32177897
ES_00034905	chr2	-	3258	23	FSM	ENSMUSG00000026825.18	ENSMUST00000113350.8	3258	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.70295317806177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTGTACCTCTGCTGGT	NA	False	NA	2	True	AATAAA	-24	NA	32243314	32198482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32199077_32200462_32200500_32202138_32202355_32202695_32202938_32204901_32205073_32205347_32205360_32205810_32205923_32206909_32207020_32210515_32210630_32213190_32213203_32213433_32213486_32213671_32213743_32217972_32218060_32224693_32224833_32225787_32225856_32225949_32226086_32226195_32226339_32227745_32227907_32228012_32228112_32229932_32230137_32230427_32230578_32230844_32230919_32243060
ES_00034906	chr2	-	3241	22	FSM	ENSMUSG00000026825.18	ENSMUST00000113365.8	3257	22	16	0	16	0	multi-exon	FALSE	canonical	0	0	junction_1	4.54206841510873	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTGTACCTCTGCTGGT	NA	False	NA	2	True	AATAAA	-24	NA	32243334	32198482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32199077_32202138_32202355_32202695_32202938_32204901_32205073_32205347_32205360_32205810_32205923_32206909_32207020_32210515_32210630_32213190_32213203_32213433_32213486_32213671_32213743_32217972_32218060_32224693_32224833_32225787_32225856_32225949_32226086_32226195_32226339_32227745_32227907_32228012_32228112_32229932_32230137_32230427_32230578_32230844_32230919_32243060
ES_00034907	chr2	-	3535	5	FSM	ENSMUSG00000009555.17	ENSMUST00000125058.8	3565	5	47	-17	47	17	multi-exon	FALSE	canonical	3	1063	junction_2	100.143646827944	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGGCCTGGGGAGATG	NA	False	NA	NA	False	NA	NA	NA	32601012	32595778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488
ES_00034908	chr2	-	2171	13	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	5	-5859	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	11.9953694769644	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGTGACCCCTCTGGGAA	NA	False	NA	NA	False	AATGAA	-16	NA	33020615	32915179	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
ES_00034909	chr2	-	6603	4	NNC	ENSMUSG00000068966.11	novel	6602	3	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.7540431867054	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTGGTCTCTGTGTT	NA	False	NA	0	True	AATAAA	-18	NA	33321357	33296119	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_33297427_33297446_33302508_33318112_33318233_33321242
ES_00034912	chr2	-	5708	24	ISM	ENSMUSG00000026867.20	ENSMUST00000113099.10	5758	26	25724	-801	13	0	3prime_fragment	FALSE	canonical	2	81	junction_18	32.0358966902533	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTGCAGGGCTCTTTT	NA	False	NA	-7	True	AATAAA	-15	NA	34618849	34566195	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342
ES_00034917	chr2	-	340	1	FSM	ENSMUSG00000026869.13	ENSMUST00000202917.2	1103	1	724	39	-524	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCGTGCACAAAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	34761498	34761158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34761200_34761500
ES_00034918	chr2	-	351	4	FSM	ENSMUSG00000026873.10	ENSMUST00000202907.2	351	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	11.1455023315337	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCCGGGAGAGGAGCCC	3646	False	NA	NA	False	NA	NA	NA	34804029	34797109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34797113_34801175_34801258_34801628_34801818_34803952
ES_00034919	chr2	-	421	3	FSM	ENSMUSG00000026875.15	ENSMUST00000141238.2	628	3	205	2	205	-2	multi-exon	FALSE	canonical	2	4	junction_2	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTTAGCACAGACAAGA	2849	False	NA	NA	False	NA	NA	NA	34848712	34846207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_34846293_34847970_34848119_34848524
ES_00034920	chr2	-	4300	6	FSM	ENSMUSG00000026878.18	ENSMUST00000113025.2	4346	6	46	0	46	0	multi-exon	FALSE	canonical	3	963	junction_3	55.091197118959	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9598	False	NA	NA	False	AATAAA	-26	NA	35091086	35070216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ES_00034924	chr2	-	2403	3	ISM	ENSMUSG00000026890.20	ENSMUST00000136821.9	825	5	2849	-1731	2849	0	3prime_fragment	FALSE	canonical	3	7	junction_1	4	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCATGGAATTCCATT	NA	False	NA	NA	False	AATAAA	-40	NA	35981436	35971964	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_35974088_35980973_35981149_35981331
ES_00034926	chr2	-	6045	4	NNC	ENSMUSG00000066798.4	novel	5077	3	NA	NA	309	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	8.80656320908194	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGGCTTGTGTATT	NA	False	NA	-1	True	AATAAA	-18	NA	37332874	37315514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_37319936_37320820_37320992_37325734_37327012_37332698
ES_00034927	chr2	-	5629	1	ISM	ENSMUSG00000026915.17	ENSMUST00000028279.10	16348	17	71788	1	11021	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCTGGACTGTTCTGTA	NA	False	NA	-1	True	AATAAA	-24	NA	37465509	37459880	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_37459900_37465500
ES_00034928	chr2	-	1355	5	FSM	ENSMUSG00000026915.17	ENSMUST00000135488.2	1355	5	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_2	32.6678358634299	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATATTTTACTCAATTT	NA	False	NA	NA	False	AATAAA	-15	NA	37593360	37524939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
ES_00034929	chr2	-	205	1	Intergenic	novelGene_2234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	37560646	37560441	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_37560400_37560600
ES_00034930	chr2	-	2894	24	FSM	ENSMUSG00000026754.17	ENSMUST00000184996.8	2894	24	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	13.2022224170244	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAGAGCTTCAAGTCT	NA	False	NA	NA	False	TATAAA	-16	NA	38955500	38907664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_38907927_38908350_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955392
ES_00034932	chr2	-	357	1	FSM	ENSMUSG00000083240.4	ENSMUST00000118708.2	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGAAGTGCCTGCTCT	NA	False	NA	NA	False	CATAAA	-8	NA	40017872	40017515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_40017500_40017900
ES_00034933	chr2	-	1076	3	NNC	ENSMUSG00000081999.4	novel	662	2	NA	NA	-40	31111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAGTAAACAG	NA	False	NA	NA	False	NA	NA	NA	41878881	41846373	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_41846408_41877144_41878030_41878724
ES_00034935	chr2	-	1045	8	FSM	ENSMUSG00000026946.10	ENSMUST00000112705.9	1130	8	85	0	39	0	multi-exon	FALSE	canonical	0	0	junction_7	2.91372543633873	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCAGTGTCTTCTTACT	8715	False	NA	NA	False	CATAAA	-13	NA	51862943	51838516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862920
ES_00034937	chr2	-	3186	26	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	228	-257	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_25	151.623554898307	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGAGCTCTTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	53080956	53028743	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53080925
ES_00034938	chr2	-	871	1	FSM	ENSMUSG00000075334.3	ENSMUST00000100089.3	1460	1	150	439	150	-439	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGGAAGGAACATAGATG	NA	False	NA	NA	False	AAAAAG	-31	NA	53975414	53974543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_53974500_53975400
ES_00034939	chr2	-	1541	1	Genic_Genomic	ENSMUSG00000087455.8	novel	NA	NA	NA	NA	2645	5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATTTGTGATTGCCCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	59214381	59212840	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_59212800_59214400
ES_00034940	chr2	-	2105	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	22.0773639730834	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTAAGTGTGTTCTTATT	NA	False	NA	6	True	AATAAA	-26	NA	59712918	59682701	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
ES_00034941	chr2	-	7780	35	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39391	2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	44.3000933395878	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTTTTTTAGGGGTG	1561	False	NA	-2	True	AATAAA	-21	NA	59881023	59729704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737782_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
ES_00034942	chr2	-	1801	1	FSM	ENSMUSG00000084104.2	ENSMUST00000120849.2	590	1	-83	-1128	-83	1128	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACTAAACACTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	64699015	64697214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_64697200_64699000
ES_00034943	chr2	-	4815	13	FSM	ENSMUSG00000034903.19	ENSMUST00000090896.10	4867	13	48	4	48	-4	multi-exon	FALSE	canonical	0	0	junction_5	1.46249406456535	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCTGTTGTTTCCCGT	NA	False	NA	NA	False	AATAAA	-16	NA	65068869	64918697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_64919902_64926031_64926209_64927976_64929737_64932412_64932511_64933503_64933739_64937355_64937431_64938101_64938262_64956236_64956462_64956551_64956650_64963922_64964152_64966688_64966891_64981322_64981512_65068706
ES_00034944	chr2	-	4469	29	FSM	ENSMUSG00000034848.18	ENSMUST00000102718.10	4470	29	1	0	1	0	multi-exon	TRUE	canonical	1	2	junction_7	6.12653562590721	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTTTATATTTTTTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	66086960	66014670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_66015188_66016497_66016566_66018603_66018725_66021902_66022128_66028011_66028208_66031466_66031629_66031816_66031968_66037795_66037878_66038997_66039109_66040335_66040525_66047528_66047636_66052997_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
ES_00034945	chr2	-	472	1	FSM	ENSMUSG00000081857.2	ENSMUST00000120263.2	462	1	-73	63	-73	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCCAGGGTGGCTATGA	NA	False	NA	NA	False	NA	NA	NA	69630029	69629557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_69629600_69630000
ES_00034946	chr2	-	258	1	FSM	ENSMUSG00000097025.3	ENSMUST00000180559.2	861	1	348	255	348	-255	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGGAACGATCGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	70492104	70491846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_70491800_70492100
ES_00034947	chr2	-	283	3	Intergenic	novelGene_2275	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATCTCTCTTTCTATCCA	NA	False	NA	NA	False	NA	NA	NA	70662729	70609530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_70609709_70612298_70612372_70662697
ES_00034951	chr2	-	2831	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5268	420	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_15	37.8665419598886	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	-3	True	AATAAA	-17	NA	71164452	71104613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71164435
ES_00034952	chr2	-	4886	17	FSM	ENSMUSG00000041762.17	ENSMUST00000076463.12	5061	17	173	2	-1	-2	multi-exon	FALSE	canonical	0	0	junction_10	2.09165006633519	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGACAGCTTTTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	73216743	73171851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73174102_73178480_73178619_73179970_73180036_73182192_73182289_73183960_73184098_73186941_73187047_73192768_73192980_73194275_73194367_73194511_73194597_73197824_73197943_73198657_73198742_73200329_73200486_73201308_73201475_73203958_73204359_73212167_73212653_73213138_73213303_73216608
ES_00034953	chr2	-	744	7	FSM	ENSMUSG00000041762.17	ENSMUST00000131430.2	741	7	0	-3	0	3	multi-exon	FALSE	canonical	1	1	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTGTGTGTATTTCTA	NA	False	NA	NA	False	AATAAA	-25	NA	73192855	73177987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73178104_73178480_73178619_73179970_73180036_73182192_73182289_73183960_73184098_73186941_73187047_73192768
ES_00034954	chr2	-	4445	8	FSM	ENSMUSG00000075284.11	ENSMUST00000102680.8	4032	8	16	-429	16	0	multi-exon	FALSE	canonical	1	2	junction_7	18.1647786574312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGTGGCTTTCTTGTCT	NA	False	NA	0	True	AATAAA	-21	NA	73316091	73259953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73315966
ES_00034955	chr2	-	561	1	ISM	ENSMUSG00000027107.4	ENSMUST00000028515.4	4386	9	15602	961	15602	-961	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTTCTCAATTAAAACCC	NA	False	NA	NA	False	NA	NA	NA	73395080	73394519	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_73394500_73395100
ES_00034956	chr2	-	208	1	Intergenic	novelGene_2280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCGCAATAAATAACATTTA	226	False	NA	NA	False	NA	NA	NA	73625511	73625303	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_73625300_73625500
ES_00034957	chr2	-	4277	14	NNC	ENSMUSG00000027104.19	novel	2396	14	NA	NA	347	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_13	82.2570656665493	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGTTTATAATTTGC	NA	False	NA	-14	True	AATAAA	-11	NA	73722527	73646867	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722307
ES_00034958	chr2	-	3803	12	NIC	ENSMUSG00000027104.19	novel	4195	14	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	128.875813117169	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATTATGTTTATAATTT	NA	False	NA	-16	True	AATAAA	-9	NA	73722894	73646869	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
ES_00034959	chr2	-	542	1	FSM	ENSMUSG00000075277.6	ENSMUST00000100000.3	2085	1	83	1460	83	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGCACTTGGACCCTT	NA	False	NA	NA	False	AATAAA	-14	NA	74580767	74580225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_74580200_74580800
ES_00034960	chr2	-	202	2	Intergenic	novelGene_2283	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	2564	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCCGACGAAAGATTAGAG	NA	False	NA	NA	False	AAAAAG	-1	NA	74616737	74612413	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_74612565_74616686
ES_00034962	chr2	-	5047	17	FSM	ENSMUSG00000034101.15	ENSMUST00000111670.9	5047	17	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_16	78.6638417571885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAGGTCTGTGTCATT	NA	False	NA	-36	True	AATAAA	-18	NA	84481084	84431124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_84433245_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84480749
ES_00034963	chr2	-	3654	12	NIC	ENSMUSG00000027071.15	novel	1812	12	NA	NA	26	1865	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	7.78109597328388	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAGTAGAAATTACAATC	NA	False	NA	NA	False	AAAACA	-29	NA	84863628	84827061	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84863344
ES_00034966	chr2	-	268	1	FSM	ENSMUSG00000082417.2	ENSMUST00000120590.2	310	1	-134	176	-134	-176	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCATTGCTCACCGTAAG	NA	False	NA	NA	False	NA	NA	NA	87377680	87377412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_87377400_87377700
ES_00034967	chr2	-	726	1	FSM	ENSMUSG00000083688.2	ENSMUST00000121486.2	724	1	34	-36	34	36	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCCACAGCATCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	87394030	87393304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_87393300_87394000
ES_00034968	chr2	-	321	1	FSM	ENSMUSG00000075132.3	ENSMUST00000216887.2	5363	1	2294	2748	2294	-2748	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTGCTTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	88106452	88106131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_88106100_88106500
ES_00034969	chr2	-	213	1	Intergenic	novelGene_2298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTTTTTTTTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	90185301	90185088	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_90185100_90185300
ES_00034970	chr2	-	4069	23	NIC	ENSMUSG00000025314.17	novel	7634	24	NA	NA	-69	-3625	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	15.2967884059756	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAAAGTTGATCTCATC	NA	False	NA	NA	False	NA	NA	NA	90411060	90266857	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90281158_90281201_90282403_90282492_90283392_90283518_90283626_90283838_90285436_90285569_90288481_90288773_90289785_90290059_90290819_90291081_90293424_90293683_90294807_90295072_90298593_90298807_90299877_90300106_90301436_90301680_90305314_90305334_90410499
ES_00034971	chr2	-	305	2	Genic_Genomic	ENSMUSG00000080873.4	novel	348	1	NA	NA	130	32656	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTAAAAAAAAAATACAGA	2418	False	NA	NA	False	NA	NA	NA	90578177	90545303	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_90545337_90577905
ES_00034973	chr2	-	3247	5	FSM	ENSMUSG00000063235.19	ENSMUST00000125001.11	3313	5	0	66	0	-66	multi-exon	FALSE	canonical	0	0	junction_2	173.481987537612	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCACCACATCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	90748331	90739125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90741664_90744327_90744520_90747197_90747256_90747772_90747854_90747953
ES_00034974	chr2	-	4093	20	FSM	ENSMUSG00000040687.17	ENSMUST00000130395.8	4655	20	0	562	0	-215	multi-exon	FALSE	canonical	1	2	junction_4	5.63723277431406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTCTGGGATGTATTCC	NA	False	NA	NA	False	NA	NA	NA	91013371	90991952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90994307_90994368_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ES_00034975	chr2	-	294	1	Intergenic	novelGene_2302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTAAGACTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	91030182	91029888	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_91029900_91030200
ES_00034976	chr2	-	313	1	FSM	ENSMUSG00000081834.2	ENSMUST00000117149.2	305	1	209	-217	209	217	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCAGCCACTGTTATGA	NA	False	NA	NA	False	GATAAA	-27	NA	91354020	91353707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_91353700_91354000
ES_00034977	chr2	-	963	6	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	0	159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1292.7403451583	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAGGGACCCACAGGGC	NA	False	NA	NA	False	AAAAAG	-42	NA	91762125	91759990	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_91760018_91760170_91760461_91761162_91761325_91761440_91761602_91761717_91761794_91761878
ES_00034978	chr2	-	832	5	NNC	ENSMUSG00000027239.15	novel	714	5	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_3	1224.54468579142	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762029	91760172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91761878
ES_00034979	chr2	-	774	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1138.49604742397	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_91760461_91761162_91761325_91761440_91761602_91761717_91761794_91762038
ES_00034980	chr2	-	768	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_3	1066.58860391437	90	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91762038
ES_00034984	chr2	-	1970	10	ISM	ENSMUSG00000027230.10	ENSMUST00000028663.5	2603	12	28966	0	28966	0	3prime_fragment	FALSE	canonical	3	8	junction_9	4.13058451009802	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGACTCTGTGTGTCCTT	NA	False	NA	NA	False	ATTAAA	-25	NA	91825881	91812672	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_91813353_91813509_91813778_91816505_91816633_91817380_91817481_91821051_91821121_91821253_91821313_91821470_91821621_91822231_91822390_91823615_91823695_91825601
ES_00034985	chr2	-	200	1	Intergenic	novelGene_2307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCTTCCTTACCCATG	7975	False	NA	NA	False	NA	NA	NA	91927832	91927632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_91927600_91927800
ES_00034986	chr2	-	1678	10	FSM	ENSMUSG00000027215.14	ENSMUST00000116457.9	1683	10	10	-5	10	0	multi-exon	FALSE	canonical	0	0	junction_9	3.62433476228891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93293281	93249455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93293254
ES_00034987	chr2	-	3036	16	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	164.700725222717	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGTCTAGAATGCTGG	NA	False	NA	-12	True	ATTAAA	-18	NA	93652887	93525976	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93650374_93650495_93651954_93652027_93652731
ES_00034988	chr2	-	1970	15	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	10	junction_14	5.05682000583653	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTGTGATGGTGCCT	NA	False	NA	NA	False	AAAAAG	-9	NA	93680286	93665773	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678535_93680109
ES_00034989	chr2	-	1654	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	8	intron_retention	FALSE	canonical	3	37	junction_3	44.7988560121796	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTGTTCCTTATGACG	8875	False	NA	88	True	AATACA	-32	NA	93841075	93810886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607
ES_00034991	chr2	-	220	2	Intergenic	novelGene_2313	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACTTTATTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	94093433	94042083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_94042259_94093388
ES_00034992	chr2	-	292	2	FSM	ENSMUSG00000027165.17	ENSMUST00000177007.2	1458	2	0	1166	0	-130	multi-exon	FALSE	canonical	3	166	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTACAGCAATAGATG	NA	False	NA	NA	False	NA	NA	NA	101459354	101440857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_101441021_101459225
ES_00034993	chr2	-	3780	6	NNC	ENSMUSG00000048058.18	novel	3833	6	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	25.7169204999354	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACTTTCAGTTTCATT	NA	False	NA	-25	True	TTTAAA	-19	NA	102016703	101780570	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_101783521_101785173_101785520_101888251_101888384_101900277_101900404_101943877_101944025_102016624
ES_00034994	chr2	-	4505	2	NNC	ENSMUSG00000027189.17	novel	5612	5	NA	NA	95659	16050	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATACTATAAAGCATGAAC	3034	False	NA	NA	False	NA	NA	NA	102134943	102114413	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_102114439_102130463
ES_00034998	chr2	-	6508	5	FSM	ENSMUSG00000005973.7	ENSMUST00000127019.2	2208	5	-4300	0	-329	0	multi-exon	FALSE	canonical	3	1454	junction_3	115.810999045859	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGTGTCTTGTGGTGT	NA	False	NA	-4	True	AATAAA	-19	NA	105229993	105217273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023
ES_00034999	chr2	-	320	1	FSM	ENSMUSG00000084164.2	ENSMUST00000120168.2	605	1	-81	366	-81	-366	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGGGTAGACCAAAAAGA	NA	False	NA	NA	False	AATGAA	-17	NA	106757595	106757275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_106757300_106757600
ES_00035001	chr2	-	1866	6	NIC	ENSMUSG00000057234.10	novel	1894	6	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.3891272223561	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTATTTATTTATTTATT	NA	False	NA	NA	False	AATAAA	-12	NA	109111058	108922649	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109110980
ES_00035003	chr2	-	729	2	NNC	ENSMUSG00000063751.7	novel	1349	5	NA	NA	12	-7186	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGCTATGTCCCTTGT	NA	False	NA	NA	False	NA	NA	NA	109743652	109739926	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_109740469_109743465
ES_00035004	chr2	-	216	1	Intergenic	novelGene_2334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACATATTTTAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	112294078	112293862	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_112293900_112294100
ES_00035005	chr2	-	4315	34	FSM	ENSMUSG00000040383.17	ENSMUST00000102543.5	4352	34	0	37	0	-37	multi-exon	FALSE	canonical	2	4	junction_1	51.8196880872694	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACTCAGTAAAACTATTT	7871	False	NA	NA	False	AATAAA	-17	NA	114005758	113935679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_113935843_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
ES_00035006	chr2	-	4336	3	NNC	ENSMUSG00000040321.4	novel	4300	2	NA	NA	22	-11	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAGAGAACTAGAGATT	NA	False	NA	-15	True	AATAAA	-14	NA	114031899	114023952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_114028109_114031435_114031534_114031817
ES_00035008	chr2	-	3112	12	NIC	ENSMUSG00000027210.21	novel	3229	13	NA	NA	-103	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	17.807046613375	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTTTTTTAATGGTT	NA	False	NA	7	True	AATAAA	-28	NA	115895096	115693541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
ES_00035009	chr2	-	2813	12	FSM	ENSMUSG00000027210.21	ENSMUST00000102538.11	2810	12	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_2	18.227216050694	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTTTTTTAATGGTT	NA	False	NA	7	True	AATAAA	-28	NA	115895528	115693541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
ES_00035010	chr2	-	888	1	FSM	ENSMUSG00000081787.2	ENSMUST00000120190.2	648	1	-104	-136	-104	136	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCATGGCACTTTTTAATG	NA	False	NA	NA	False	NA	NA	NA	116359075	116358187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_116358200_116359100
ES_00035012	chr2	-	3865	11	FSM	ENSMUSG00000048647.10	ENSMUST00000171024.8	5290	11	0	1425	0	-1425	multi-exon	FALSE	canonical	1	4	junction_8	3.41906419945575	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGCAAGACAGATCTCTA	NA	False	NA	NA	False	NA	NA	NA	119371994	119348416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119351207_119354003_119354196_119355052_119355197_119359164_119359246_119359326_119359432_119360569_119360657_119363922_119363982_119369228_119369357_119369603_119369659_119370504_119370574_119371839
ES_00035013	chr2	-	1128	5	FSM	ENSMUSG00000072980.4	ENSMUST00000110805.3	1778	5	-50	700	-50	-241	multi-exon	FALSE	canonical	3	618	junction_4	27.7758888246623	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCACTGTTGAAAAAATG	7430	False	NA	NA	False	NA	NA	NA	119449000	119440692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334
ES_00035015	chr2	-	1038	1	FSM	ENSMUSG00000082029.2	ENSMUST00000119459.2	411	1	-115	-512	-115	512	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAGAAGAAGAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	119496632	119495594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_119495600_119496600
ES_00035016	chr2	-	305	2	FSM	ENSMUSG00000087555.2	ENSMUST00000155641.2	336	2	31	0	31	0	multi-exon	FALSE	canonical	0	0	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTCCAGCTCTATGCAGT	NA	False	NA	NA	False	GATAAA	-3	NA	120076048	120075401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120075555_120075896
ES_00035017	chr2	-	1007	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11139	7	11139	2	3prime_fragment	FALSE	canonical	2	16	junction_1	0	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCACTGAGCCTGTGT	5887	False	NA	NA	False	AATAAA	-24	NA	120131719	120130444	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_120131110_120131377
ES_00035018	chr2	-	2866	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	3	intron_retention	TRUE	non_canonical	0	0	junction_1	132.468147114693	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTCATTTATTTC	NA	False	NA	NA	False	TATAAA	-17	NA	120234559	120185789	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120185973_120185992_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ES_00035021	chr2	-	6753	20	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	1	0	intron_retention	FALSE	canonical	3	389	junction_17	196.49011591164	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTATTTGTCTGCATA	9786	False	NA	-6	True	AATAAA	-21	NA	120394323	120337300	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
ES_00035022	chr2	-	4523	27	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	1	1	intron_retention	FALSE	canonical	3	36	junction_26	16.3125899757205	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGGCTGTTCTCCCTGC	6143	False	NA	NA	False	AATAAA	-16	NA	120561970	120548665	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560987_120561182
ES_00035023	chr2	-	7342	15	FSM	ENSMUSG00000090100.8	ENSMUST00000143051.8	3093	15	-49	-4200	-4	4200	multi-exon	FALSE	canonical	3	12	junction_13	10.0369216355597	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTAGTACAGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	120680920	120571951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
ES_00035024	chr2	-	7656	47	NNC	ENSMUSG00000027272.6	novel	7768	47	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	15.5621960876331	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTTCTCATGTTTGGGC	NA	False	NA	NA	False	AATAAA	-34	NA	120801090	120690752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_120693273_120694798_120694901_120696870_120697042_120698706_120698785_120701469_120701527_120703604_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256_120720354_120722552_120722609_120723548_120723698_120725552_120725644_120726976_120727075_120730981_120731132_120732082_120732177_120734474_120734681_120737324_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
ES_00035025	chr2	-	1447	2	FSM	ENSMUSG00000027272.6	ENSMUST00000138824.2	1678	2	0	231	0	-231	multi-exon	FALSE	canonical	3	104	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACATACCTCCAGCAG	NA	False	NA	NA	False	NA	NA	NA	120801173	120792825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120794102_120801002
ES_00035026	chr2	-	2398	2	FSM	ENSMUSG00000050619.15	ENSMUST00000146243.2	2894	2	0	496	0	-496	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	121001606	120996117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_120997200_121000290
ES_00035029	chr2	-	3491	25	ISM	ENSMUSG00000033526.17	ENSMUST00000110626.8	5171	30	2194	1006	0	-1000	3prime_fragment	FALSE	canonical	3	47	junction_6	17.6044501949554	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAATTGGCAGACCAAC	NA	False	NA	NA	False	NA	NA	NA	121179272	121142379	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174
ES_00035031	chr2	-	2458	6	FSM	ENSMUSG00000033526.17	ENSMUST00000129276.8	3311	6	0	853	0	-433	multi-exon	FALSE	canonical	3	56	junction_5	20.2622802270623	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTTGGGCTTGTAGGG	NA	False	NA	NA	False	NA	NA	NA	121185811	121177961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121179050_121179174_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ES_00035032	chr2	-	2548	1	FSM	ENSMUSG00000074881.5	ENSMUST00000104936.4	2341	1	-228	21	-228	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAAAAAATGCTGATTG	540	False	NA	NA	False	AATAAA	-21	NA	121786801	121784253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_121784300_121786800
ES_00035033	chr2	-	1591	12	NNC	ENSMUSG00000027233.5	novel	2434	18	NA	NA	59849	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	37.4944624010507	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGTTGCCAGACTTTAT	NA	False	NA	2	True	AATAAA	-22	NA	121956821	121950586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581_121956641_121956738
ES_00035034	chr2	-	1002	3	NNC	ENSMUSG00000027201.17	novel	2928	15	NA	NA	-11908	55265	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAAGATCTTCCATGTG	NA	False	NA	NA	False	NA	NA	NA	124942839	124871282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_124871316_124929663_124930605_124942811
ES_00035035	chr2	-	406	1	FSM	ENSMUSG00000074846.4	ENSMUST00000188689.2	204	1	-10	-192	-10	192	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGAAAATCAGGATGC	1779	False	NA	NA	False	AGTAAA	-45	NA	126551487	126551081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_126551100_126551500
ES_00035036	chr2	-	4842	19	NNC	ENSMUSG00000027365.15	novel	7107	39	NA	NA	-4620	55622	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.72802888208	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGGGTTGGCTCAGAGA	6471	False	NA	NA	False	NA	NA	NA	126664206	126577862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_126577895_126633484_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647005_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083
ES_00035037	chr2	-	7139	40	NNC	ENSMUSG00000027365.15	novel	7107	39	NA	NA	0	55622	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.9440024705564	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGGGTTGGCTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	126718150	126577862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_126577895_126633484_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ES_00035039	chr2	-	268	1	FSM	ENSMUSG00000103957.2	ENSMUST00000192976.2	324	1	4	52	4	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGAGAACTCGAGGGC	NA	False	NA	NA	False	NA	NA	NA	127111948	127111680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127111700_127111900
ES_00035041	chr2	-	6751	4	FSM	ENSMUSG00000034800.16	ENSMUST00000164551.2	1284	4	-3168	-2299	1	26	multi-exon	FALSE	canonical	3	28	junction_2	2.49443825784929	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTCTGTTGACTGTCT	NA	False	NA	-19	True	NA	NA	NA	127426596	127416555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395
ES_00035042	chr2	-	3357	25	FSM	ENSMUSG00000027379.15	ENSMUST00020183811.1	3418	25	55	6	0	3	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673724	127643041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ES_00035044	chr2	-	10325	50	Fusion	ENSMUSG00000014355.11_ENSMUSG00000109931.2	novel	8942	48	NA	NA	0	254	multi-exon	FALSE	canonical	2	7	junction_1	83.2071926055141	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTTTGTCCTTTTGAC	NA	False	NA	6	True	AATAAA	-20	NA	128529274	128443430	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_128443815_128446511_128446668_128451143_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
ES_00035046	chr2	-	1542	9	NNC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_6	71.0922595997623	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785927	128768187	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777243_128777467_128781762_128781857_128785767
ES_00035047	chr2	-	254	1	ISM	ENSMUSG00000081888.2	ENSMUST00000122326.2	682	2	769	103	769	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTAAGTTCTTTGACCACA	NA	False	NA	NA	False	NA	NA	NA	129220547	129220293	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_129220300_129220500
ES_00035048	chr2	-	202	1	NIC	ENSMUSG00000081888.2	novel	682	2	NA	NA	68	-856	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGAACCTAGTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	129221248	129221046	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_129221000_129221200
ES_00035050	chr2	-	569	2	Genic_Genomic	ENSMUSG00000083483.4	novel	447	1	NA	NA	-27	24472	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAAAAAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	130227276	130202330	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_130202371_130226747
ES_00035051	chr2	-	2558	8	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	43	-1328	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	70.5477114571177	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130471904	130433249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_130433935_130437011_130437074_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
ES_00035052	chr2	-	874	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184121.8	874	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	340.164380198097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGGTGTGGCTTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	131001944	130988713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993677_130995513_130995631_131001872
ES_00035053	chr2	-	4734	11	NIC	ENSMUSG00000027339.16	novel	4589	11	NA	NA	121	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_10	10.2156742312977	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCCTGTGGATCTGCTT	NA	False	NA	0	True	AATAAA	-15	NA	131871800	131834771	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871611
ES_00035055	chr2	-	931	2	FSM	ENSMUSG00000027342.15	ENSMUST00000140338.2	931	2	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	2507	False	NA	-10	True	AATAAA	-27	NA	132092090	132091081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_132091616_132091693
ES_00035058	chr2	-	2336	8	ISM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	73	142735	73	317	5prime_fragment	FALSE	canonical	3	23	junction_7	25.9253244720214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTTCTCAGTATGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	139908607	139818134	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
ES_00035059	chr2	-	2668	5	NNC	ENSMUSG00000039033.12	novel	2480	14	NA	NA	71	-47566	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	43.6713578904984	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTGTATTTTCACTG	NA	False	NA	NA	False	AATAAA	-18	NA	139908609	139866017	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_139868133_139884013_139884083_139890161_139890230_139899206_139899420_139908406
ES_00035060	chr2	-	471	1	FSM	ENSMUSG00000080006.5	ENSMUST00000116122.3	438	1	2	-35	2	35	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAAAAAATTCATCTA	NA	False	NA	-12	True	AATAAA	-12	NA	139915387	139914916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_139914900_139915400
ES_00035061	chr2	-	2953	1	Intergenic	novelGene_2378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAGTCATCTTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	143998321	143995368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_143995400_143998300
ES_00035062	chr2	-	1546	4	FSM	ENSMUSG00000037279.14	ENSMUST00000103171.10	1547	4	1	0	1	0	multi-exon	FALSE	canonical	1	1	junction_3	9.80929264637477	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTTTAAAATTTT	NA	False	NA	-12	True	AATAAA	-19	NA	144173614	144147094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_144147840_144159630_144159821_144172823_144173042_144173221
ES_00035063	chr2	-	3744	22	NNC	ENSMUSG00000037110.21	novel	3730	16	NA	NA	1	1968	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	9.102589898328	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTGCAGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-31	NA	146353923	146244786	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_146245609_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
ES_00035064	chr2	-	252	1	FSM	ENSMUSG00000074737.3	ENSMUST00000099264.2	690	1	304	134	304	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAGGAGCACAAAGGGCG	NA	False	NA	NA	False	NA	NA	NA	149672829	149672577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_149672600_149672800
ES_00035065	chr2	-	402	1	FSM	ENSMUSG00000083055.2	ENSMUST00000119999.2	995	1	212	381	212	-381	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCAGAAGAAGAGGACCAT	NA	False	NA	NA	False	NA	NA	NA	149953284	149952882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_149952900_149953300
ES_00035066	chr2	-	2653	4	NIC	ENSMUSG00000063364.11	novel	745	5	NA	NA	14	2013	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	3.29983164553722	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATTTACAAAAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	150204639	150182742	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_150185076_150186228_150186290_150186499_150186627_150204507
ES_00035067	chr2	-	279	1	Genic_Genomic	ENSMUSG00000068130.12	novel	NA	NA	NA	NA	4015	97	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGAGGCCGTCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	150249242	150248963	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_150249000_150249200
ES_00035068	chr2	-	2776	2	Intergenic	novelGene_2387	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	7	junction_1	0	143	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACTCATGAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	150312414	150308556	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_150311131_150312212
ES_00035071	chr2	-	3324	5	FSM	ENSMUSG00000027457.16	ENSMUST00000109877.10	3367	5	43	0	-1	0	multi-exon	TRUE	canonical	1	1	junction_2	0.82915619758885	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGACAACATAAAATCCAT	1682	False	NA	NA	False	AATAAA	-14	NA	151474470	151433644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_151436520_151439028_151439179_151442897_151442995_151474067_151474175_151474375
ES_00035072	chr2	-	3306	5	FSM	ENSMUSG00000032869.16	ENSMUST00000155939.8	3306	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	143.726084967204	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACCATGCAGAGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	151583213	151557981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151582930
ES_00035073	chr2	-	2071	13	NNC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	0	26755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.184340002933	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCAGAGTCGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	152174332	152131498	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_152131685_152158752_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ES_00035074	chr2	-	1939	14	NNC	ENSMUSG00000027466.16	novel	2252	13	NA	NA	0	26755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.929159051533	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCAGAGTCGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	152174573	152131498	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_152131685_152158752_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ES_00035075	chr2	-	1842	5	FSM	ENSMUSG00000027466.16	ENSMUST00000130165.8	1842	5	0	0	0	0	multi-exon	FALSE	canonical	3	483	junction_1	67.5092586242806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152164917	152158253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079
ES_00035076	chr2	-	2214	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_5	166.375148384607	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174323	152158253	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ES_00035077	chr2	-	3306	2	NNC	ENSMUSG00000051817.9	novel	4169	2	NA	NA	-118	43266	intron_retention	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGCGCCACCACTGTC	NA	False	NA	NA	False	NA	NA	NA	152240101	152192264	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_152192290_152236820
ES_00035078	chr2	-	2391	3	NIC	ENSMUSG00000007659.19	novel	2568	3	NA	NA	9	8	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	154.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTCTGCGCCGCATGAG	NA	False	NA	3	True	AATAAA	-30	NA	152672552	152622579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_152624203_152671346_152672023_152672460
ES_00035079	chr2	-	2404	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	21	8	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	148	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTCTGCGCCGCATGAG	NA	False	NA	3	True	AATAAA	-30	NA	152673609	152622579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_152624203_152671346_152672041_152673522
ES_00035080	chr2	-	1211	6	NNC	ENSMUSG00000027472.15	novel	1273	5	NA	NA	0	102857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.148689457227	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGCTGTGGCACATGCC	8724	False	NA	NA	False	NA	NA	NA	152857262	152747952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_152747978_152850811_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
ES_00035081	chr2	-	1518	3	NNC	ENSMUSG00000073236.5	novel	1898	2	NA	NA	108	-333	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	7.5	180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATACTTGCTAAAAAA	9383	False	NA	NA	False	NA	NA	NA	153187622	153183409	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153184785_153187037_153187099_153187540
ES_00035082	chr2	-	5864	10	NNC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	8901	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	33.274763358185	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAGCTTCGACTATGTC	NA	False	NA	NA	False	AATAAA	-20	NA	153362990	153249380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153312607_153312718_153325606_153325763_153362884
ES_00035083	chr2	-	3047	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	7	-2	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_1	54.2909400622195	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTTATGGGTTTGTT	NA	False	NA	NA	False	ATTAAA	-12	NA	153474644	153458854	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153460241_153460344_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ES_00035084	chr2	-	1201	9	NNC	ENSMUSG00000056941.18	novel	3210	9	NA	NA	53	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_8	60.153969112603	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAGAAAAGCTCTGAATC	NA	False	NA	-21	True	ATTAAA	-15	NA	153474598	153460755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471164_153474513
ES_00035085	chr2	-	2701	9	NNC	ENSMUSG00000027490.18	novel	2732	7	NA	NA	0	27115	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	485.753393580529	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGTCTTAAATAAATAACA	9674	False	NA	NA	False	NA	NA	NA	154411640	154374211	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_154374370_154401323_154402322_154402341_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154411408
ES_00035087	chr2	-	211	2	Antisense	novelGene_ENSMUSG00000027596.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGAAGTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	154700402	154667367	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr2_-_154667565_154700388
ES_00035089	chr2	-	257	1	FSM	ENSMUSG00000082596.2	ENSMUST00000119431.2	629	1	306	66	306	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATCGTCCACGTCATTGA	9919	False	NA	NA	False	NA	NA	NA	155040874	155040617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155040600_155040900
ES_00035090	chr2	-	4016	14	NNC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	41.2755210633767	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAAGGTATGTTATT	NA	False	NA	-22	True	AATAAA	-14	NA	155315722	155232587	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260912_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
ES_00035091	chr2	-	7045	16	NNC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	61.4919687619629	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACTTAAAGGTATGTTAT	NA	False	NA	-23	True	AATAAA	-13	NA	155315744	155232588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155247394_155250371_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155280626_155280633_155282614_155282706_155315559
ES_00035092	chr2	-	1724	12	FSM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_11	301.306960254025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8446	False	NA	-10	True	AATAAA	-11	NA	155434634	155405108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155434613
ES_00035093	chr2	-	1931	12	NNC	ENSMUSG00000038312.11	novel	2290	11	NA	NA	35	83396	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	93.1619047458121	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCCCTGCCTCTTGCTCC	NA	False	NA	NA	False	NA	NA	NA	155571360	155460200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155460227_155543946_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
ES_00035098	chr2	-	1960	14	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	85	39058	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	73.8491185302324	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGAACCTTTTTGAACA	3224	False	NA	NA	False	AAAAAG	-41	NA	155985988	155926500	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_155926529_155965559_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ES_00035101	chr2	-	699	5	FSM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	947.747988655212	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGCCATGAAGAACGTAGC	NA	False	NA	-26	True	NA	NA	NA	156022069	156019280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156019306_156019552_156019827_156020799_156020873_156021096_156021161_156021806
ES_00035102	chr2	-	3112	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	5	6265	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	69.1391511534689	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAATGGTTTCTCTCGA	NA	False	NA	-5	True	NA	NA	NA	156681735	156668703	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_156671325_156679742_156679834_156680337_156680457_156681454
ES_00035103	chr2	-	6818	14	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	18861	1	18861	-1	3prime_fragment	FALSE	canonical	2	9	junction_5	3.90266181352795	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAATGCCTTTTATGTCT	NA	False	NA	-3	True	NA	NA	NA	156902313	156857719	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_156860420_156862109_156863458_156864736_156864808_156865716_156865789_156869306_156869559_156871399_156871568_156872438_156872544_156872707_156872939_156875177_156875304_156879089_156879231_156881746_156882923_156883813_156883877_156895438_156895598_156902107
ES_00035104	chr2	-	554	2	FSM	ENSMUSG00000055485.7	ENSMUST00000133571.2	674	2	0	120	0	-120	multi-exon	FALSE	canonical	3	19	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTCTAGGCCTAAGCAG	5076	False	NA	NA	False	NA	NA	NA	156882159	156879089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_156879231_156881746
ES_00035107	chr2	-	2621	3	NNC	ENSMUSG00000087445.2	novel	464	2	NA	NA	-5098	974	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	2	1093	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATCTAAAGTTACCCCACC	NA	False	NA	NA	False	AATAAA	-42	NA	157392487	157385211	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_157386353_157387092_157387198_157391112
ES_00035108	chr2	-	871	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATAGGTTAATTCAGTCT	8359	False	NA	-27	True	AATAAA	-2	NA	158203430	158197714	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
ES_00035110	chr2	-	1066	3	NNC	ENSMUSG00000078956.4	novel	340	3	NA	NA	-36250	774	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGAAGTGTGTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	160498141	160409524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_160410363_160461781_160461918_160498049
ES_00035111	chr2	-	968	4	FSM	ENSMUSG00000050700.12	ENSMUST00000109454.8	3396	4	0	2428	0	-2427	multi-exon	FALSE	canonical	2	7	junction_1	4.64279609239471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGACCTTCGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	160754237	160750784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160751096_160751526_160751751_160752661_160752785_160753927
ES_00035112	chr2	-	3608	23	FSM	ENSMUSG00000057133.15	ENSMUST00000134178.8	3608	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_20	22.3005855461797	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGACAAAAAACCAGC	NA	False	NA	NA	False	NA	NA	NA	160950942	160825103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884050_160894307_160894826_160901838_160901895_160950908
ES_00035113	chr2	-	2771	17	FSM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	0	321	0	-321	multi-exon	FALSE	canonical	3	24	junction_7	23.0945745793249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACCATAGGATGATAACT	NA	False	NA	NA	False	NA	NA	NA	160950995	160850274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ES_00035114	chr2	-	603	3	FSM	ENSMUSG00000057133.15	ENSMUST00000137831.2	616	3	13	0	13	0	multi-exon	FALSE	canonical	3	25	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATGGTGAGTCCGGCA	81	False	NA	NA	False	NA	NA	NA	160860156	160856011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_160856260_160859095_160859240_160859945
ES_00035116	chr2	-	816	3	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1779	76776	multi-exon	FALSE	non_canonical	0	0	junction_1	367.5	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACCAAGCAACATCTCAA	890	False	NA	NA	False	NA	NA	NA	162931554	162852177	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_162852212_162928955_162929642_162931458
ES_00035117	chr2	-	940	3	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1779	76776	multi-exon	FALSE	non_canonical	0	0	junction_1	349	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACCAAGCAACATCTCAA	890	False	NA	NA	False	NA	NA	NA	162931554	162852177	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_162852210_162928955_162929768_162931458
ES_00035119	chr2	-	2553	4	FSM	ENSMUSG00000018322.11	ENSMUST00000132602.2	2089	4	-464	0	-464	0	multi-exon	FALSE	canonical	3	7	junction_2	283.184666879327	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	NA	False	NA	-5	True	ATTAAA	-16	NA	163908099	163895459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_163896428_163896620_163896748_163902758_163902929_163906811
ES_00035120	chr2	-	897	1	Genic_Genomic	ENSMUSG00000017009.4	novel	NA	NA	NA	NA	18045	2	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCAGTTTTATTTTTGGT	9059	False	NA	49	True	AATAAA	-26	NA	164267061	164266164	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_164266200_164267100
ES_00035121	chr2	-	741	6	FSM	ENSMUSG00000017300.10	ENSMUST00000103095.5	700	6	-44	3	-44	-3	multi-exon	FALSE	canonical	1	1	junction_3	1.16619037896906	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGGCTTGACCGACTG	NA	False	NA	NA	False	AATAAA	-13	NA	164621705	164619083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164619254_164619391_164619529_164619650_164619766_164619863_164620008_164620095_164620148_164621582
ES_00035122	chr2	-	1581	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	1	-527	0	524	multi-exon	TRUE	canonical	3	23	junction_1	116.717779279765	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGTGCCAGGAAAGGAT	8167	False	NA	NA	False	NA	NA	NA	164646801	164634160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ES_00035123	chr2	-	1087	3	FSM	ENSMUSG00000017307.17	ENSMUST00000136767.3	658	3	-92	-337	-32	337	multi-exon	FALSE	canonical	3	284	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGATGACTCAGTTTAGA	8134	False	NA	NA	False	NA	NA	NA	164646834	164641140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164641866_164644916_164645054_164646609
ES_00035124	chr2	-	653	5	FSM	ENSMUSG00000017754.14	ENSMUST00000142603.8	653	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	156.742424059346	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTCTTTGACTCTGCCA	NA	False	NA	NA	False	NA	NA	NA	164698716	164688732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_164688837_164693432_164693525_164694392_164694601_164696185_164696342_164698623
ES_00035126	chr2	-	215	1	Intergenic	novelGene_2421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCACGTGCGTATCTATT	NA	False	NA	NA	False	NA	NA	NA	164946839	164946624	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_-_164946600_164946800
ES_00035127	chr2	-	2269	7	ISM	ENSMUSG00000053166.15	ENSMUST00000065438.13	3702	12	91012	1	37618	-1	3prime_fragment	FALSE	canonical	2	10	junction_5	5.30461015427985	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGTTATCCTTGTGGTTAC	NA	False	NA	-6	True	NA	NA	NA	164985761	164953427	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164983973_164984228_164985561
ES_00035128	chr2	-	4997	22	NIC	ENSMUSG00000039671.19	novel	5072	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_11	194.73016390558	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCGTTTCTTCATGGCTG	NA	False	NA	0	True	ATTAAA	-21	NA	165700093	165626071	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165699974
ES_00035130	chr2	-	4406	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109266.11	5072	22	48584	2	42533	1	3prime_fragment	FALSE	canonical	3	102	junction_8	24.3871764458291	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	-2	True	ATTAAA	-19	NA	165651509	165626073	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594
ES_00035131	chr2	-	4328	20	NIC	ENSMUSG00000039671.19	novel	5232	23	NA	NA	6	1	combination_of_known_splicesites	FALSE	canonical	3	58	junction_8	171.254374956753	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	-2	True	ATTAAA	-19	NA	165726562	165626073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
ES_00035132	chr2	-	4271	20	NIC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	-18	1	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	168.553681331215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	-2	True	ATTAAA	-19	NA	165726586	165626073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527
ES_00035133	chr2	-	4333	20	NIC	ENSMUSG00000039671.19	novel	5232	23	NA	NA	61	1	combination_of_known_splicesites	FALSE	canonical	3	58	junction_8	168.338186851215	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	-2	True	ATTAAA	-19	NA	165740875	165626073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ES_00035134	chr2	-	3116	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-28	791	at_least_one_novel_splicesite	TRUE	non_canonical	1	123	junction_1	151.159157542939	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATTGAATTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	165726596	165668257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
ES_00035135	chr2	-	2367	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	355	-3	at_least_one_novel_splicesite	FALSE	non_canonical	1	80	junction_10	171.596649151433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTAAGAATGGTTGTGT	NA	False	NA	30	True	AATAGA	-10	NA	165703570	165669051	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165703460
ES_00035136	chr2	-	2528	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	57	-3	at_least_one_novel_splicesite	FALSE	non_canonical	1	8	junction_12	182.118703658417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTAAGAATGGTTGTGT	NA	False	NA	30	True	AATAGA	-10	NA	165740879	165669051	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165669633_165669846_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527_165726759_165740835
ES_00035138	chr2	-	236	2	NNC	ENSMUSG00000039671.19	novel	300	3	NA	NA	-27176	29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTCTGCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	165768112	165714917	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165714947_165767905
ES_00035139	chr2	-	4169	22	NNC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	175	95495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.198351124904	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAGAGAGATTGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	165997408	165819513	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_165819546_165915832_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
ES_00035140	chr2	-	3215	7	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	81	0	intron_retention	FALSE	canonical	0	0	junction_6	13.2748718344933	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTCTTGACTTTTTGTT	NA	False	NA	-1	True	AATAAA	-17	NA	166349910	166341955	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349381_166349480_166349807
ES_00035141	chr2	-	403	1	NIC	ENSMUSG00000082665.2	novel	1475	2	NA	NA	648	-858	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATCTTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	166850311	166849908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_166849900_166850300
ES_00035143	chr2	-	511	4	FSM	ENSMUSG00000078919.11	ENSMUST00000153258.8	511	4	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_2	199.202298067958	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	8654	False	NA	-19	True	AATAAA	-23	NA	168059624	168052200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168052557_168053285_168053348_168054879_168054949_168059600
ES_00035144	chr2	-	4058	3	FSM	ENSMUSG00000074575.5	ENSMUST00000109191.2	4089	3	36	-5	36	5	multi-exon	FALSE	canonical	1	2	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTCTGGTGTTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	168123016	168102031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_168105071_168110388_168111189_168122797
ES_00035145	chr2	-	5095	4	NIC	ENSMUSG00000027547.18	novel	5073	4	NA	NA	-162	-3	intron_retention	FALSE	canonical	3	69	junction_3	260.140133176119	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	NA	False	NA	-20	True	AATAAA	-19	NA	168607328	168590254	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_168592381_168594373_168594661_168596353_168598721_168607013
ES_00035146	chr2	-	201	1	ISM	ENSMUSG00000027551.16	ENSMUST00000136242.2	1352	2	4093	398	4093	-398	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTCTAGCCCCAAAGACC	NA	False	NA	NA	False	NA	NA	NA	168793093	168792892	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_168792900_168793100
ES_00035147	chr2	-	201	2	FSM	ENSMUSG00000013523.14	ENSMUST00000147577.2	444	2	51	192	51	-192	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGCACCCTGAAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	170229872	170229082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_170229128_170229716
ES_00035148	chr2	-	524	2	Genic_Genomic	ENSMUSG00000084067.4	novel	306	1	NA	NA	-75	21056	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	170305814	170284377	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr2_-_170284538_170305450
ES_00035151	chr2	-	864	5	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	1	8	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	3.67423461417477	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501160	173437890	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173457275_173457370_173501115
ES_00035159	chr2	-	500	4	ISM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	12	4466	-3	-974	5prime_fragment	FALSE	canonical	3	18	junction_2	8.37987005998436	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176619590	176610308	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr2_-_176610521_176610725_176610853_176615991_176616047_176619484
ES_00035162	chr2	-	5340	7	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078868.4	novel	1050	3	NA	NA	-93	78068	multi-exon	TRUE	non_canonical	0	0	junction_4	218.912209699586	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAATAAACAAATCTT	NA	False	NA	NA	False	NA	NA	NA	177016193	176878378	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr2_-_176878485_176952506_176957402_176958542_176958604_176958795_176958922_176969515_176969535_177012927_177012965_177016097
ES_00035164	chr2	-	912	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGGGCATTGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	176898214	176886641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
ES_00035165	chr2	-	4378	4	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-75	2997	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	24.1430919496424	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACAGGCAGAAACATTCC	NA	False	NA	NA	False	AATAAA	-35	NA	177016175	177003315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_177005497_177005644_177007703_177008856_177008918_177016097
ES_00035166	chr2	-	4505	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-75	2997	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.5101720123294	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACAGGCAGAAACATTCC	NA	False	NA	NA	False	AATAAA	-35	NA	177016175	177003315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_177005497_177005644_177007703_177008856_177008918_177009124_177009252_177016097
ES_00035167	chr2	-	569	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5539	-1237	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	17.8465682975747	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATGACCTCCAAAAACATA	NA	False	NA	NA	False	NA	NA	NA	177021639	177007549	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
ES_00035169	chr2	-	1436	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	110.628601636286	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090096	177079877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ES_00035170	chr2	-	2989	1	FSM	ENSMUSG00000085513.2	ENSMUST00000132460.2	877	1	-23	-2089	-23	2089	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAACAATAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	177234373	177231384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr2_-_177231400_177234400
ES_00035172	chr2	-	4306	16	NNC	ENSMUSG00000039117.17	novel	4380	15	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	27.0541843138707	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCACGCCTGCTTTTCCA	NA	False	NA	1	True	ATTAAA	-18	NA	179618439	179553943	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205_179618088_179618162
ES_00035173	chr2	-	4342	16	NNC	ENSMUSG00000039117.17	novel	4416	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	30.2364019023428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCACGCCTGCTTTTCCA	NA	False	NA	1	True	ATTAAA	-18	NA	179618439	179553943	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573772_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205_179618088_179618162
ES_00035175	chr2	-	895	8	NNC	ENSMUSG00000027566.16	novel	914	7	NA	NA	0	19755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1712.03533246012	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAGAAAAAAAGTTCAG	NA	False	NA	NA	False	NA	NA	NA	179684178	179658411	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_179658441_179678166_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ES_00035178	chr2	-	7838	4	NIC	ENSMUSG00000038914.16	novel	4613	6	NA	NA	1	7	intron_retention	FALSE	canonical	3	159	junction_3	16.1107279647928	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACAGTTTTTGTATCC	NA	False	NA	-15	True	TTTAAA	-23	NA	180351791	180322858	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_180329591_180330616_180331449_180333656_180333842_180351702
ES_00035183	chr2	-	894	5	NNC	ENSMUSG00000027581.13	novel	1136	5	NA	NA	373	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	77.5995328594187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180955920	180948251	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955855
ES_00035186	chr2	-	1783	14	NIC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	302	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	39.4470658720919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	7905	False	NA	1	True	AATAAA	-23	NA	181220443	181210941	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181220339
ES_00035187	chr2	-	5505	16	NNC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	15	-7	intron_retention	TRUE	canonical	3	4	junction_15	13.7365691980688	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGGGATTTTGTGTG	7498	False	NA	-10	True	AATAAA	-17	NA	181234536	181223904	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231975_181232262_181232406_181232652_181232779_181234446
ES_00035188	chr2	+	234	1	Intergenic	novelGene_2152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACTCTGTCTCGAAA	91	False	NA	NA	False	NA	NA	NA	5954692	5954926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_5954700_5954900
ES_00035189	chr2	+	201	1	Intergenic	novelGene_2153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGATCCTTTTAAATATT	NA	False	NA	NA	False	NA	NA	NA	11404989	11405190	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_11405000_11405200
ES_00035190	chr2	+	206	1	Intergenic	novelGene_2158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGCAATTCTTTAAGGA	NA	False	NA	NA	False	NA	NA	NA	16076173	16076379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_16076200_16076400
ES_00035191	chr2	+	466	1	Intergenic	novelGene_2167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCACACTCGCTCTGGC	4494	False	NA	NA	False	AATAGA	-8	NA	20904654	20905120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_20904700_20905100
ES_00035192	chr2	+	207	1	Intergenic	novelGene_2217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGAGGCTGGAGAGATGG	NA	False	NA	NA	False	TTTAAA	-9	NA	33042050	33042257	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_33042000_33042300
ES_00035193	chr2	+	202	1	Intergenic	novelGene_2219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACTCTTTTGTGTTATG	NA	False	NA	NA	False	NA	NA	NA	33543887	33544089	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_33543900_33544100
ES_00035194	chr2	+	204	1	Intergenic	novelGene_2222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCATCTTTTAATTCC	NA	False	NA	NA	False	NA	NA	NA	34079206	34079410	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34079200_34079400
ES_00035195	chr2	+	219	1	Intergenic	novelGene_2223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAATCTTTTTAACTTG	NA	False	NA	NA	False	NA	NA	NA	34155652	34155871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34155700_34155900
ES_00035197	chr2	+	234	1	Intergenic	novelGene_2225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGCAAGCTAATGGAATC	8365	False	NA	NA	False	AAAACA	-31	NA	34415331	34415565	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34415300_34415600
ES_00035198	chr2	+	202	1	Intergenic	novelGene_2226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAAAATAAATTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	34480387	34480589	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34480400_34480600
ES_00035200	chr2	+	283	1	Intergenic	novelGene_2228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCTCAAAAAACAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34682324	34682607	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34682300_34682600
ES_00035201	chr2	+	205	1	Intergenic	novelGene_2229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTCTCGCCAGCCCCTCA	NA	False	NA	NA	False	NA	NA	NA	34691120	34691325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_34691100_34691300
ES_00035202	chr2	+	298	1	Intergenic	novelGene_2233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATCTACAGAACTTTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	36279747	36280045	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_36279700_36280000
ES_00035203	chr2	+	227	1	Intergenic	novelGene_2235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	37628158	37628385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_37628200_37628400
ES_00035204	chr2	+	1141	1	Intergenic	novelGene_2254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTACACAAAAGAGGAGAAA	NA	False	NA	NA	False	NA	NA	NA	50884425	50885566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_50884400_50885600
ES_00035205	chr2	+	227	1	Intergenic	novelGene_2257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTCTTACATCTTATA	NA	False	NA	NA	False	AAGAAA	-45	NA	59440566	59440793	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_59440600_59440800
ES_00035207	chr2	+	207	1	Intergenic	novelGene_2260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTATTTTCTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	59967384	59967591	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_59967400_59967600
ES_00035208	chr2	+	218	1	Intergenic	novelGene_2261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAACAATTTCAGATA	NA	False	NA	NA	False	NA	NA	NA	59993370	59993588	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_59993400_59993600
ES_00035209	chr2	+	229	1	Intergenic	novelGene_2263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGTTAAAAAAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	65234643	65234872	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_65234600_65234900
ES_00035211	chr2	+	415	1	Intergenic	novelGene_2269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAGAAAGGACTGAAGGA	NA	False	NA	NA	False	NA	NA	NA	69705072	69705487	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_69705100_69705500
ES_00035212	chr2	+	226	1	Intergenic	novelGene_2272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAACAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70244125	70244351	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_70244100_70244400
ES_00035213	chr2	+	219	1	Intergenic	novelGene_2274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAGGCAACTCTTATAAG	8403	False	NA	NA	False	NA	NA	NA	70484584	70484803	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_70484600_70484800
ES_00035215	chr2	+	205	1	Intergenic	novelGene_2300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTTTATCTTTTAAACAT	NA	False	NA	NA	False	NA	NA	NA	90475811	90476016	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_90475800_90476000
ES_00035216	chr2	+	214	1	Intergenic	novelGene_2301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	345	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTCCCTGGCTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	90541131	90541345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_90541100_90541300
ES_00035218	chr2	+	203	1	Intergenic	novelGene_2303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTTAACGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	91200304	91200507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_91200300_91200500
ES_00035219	chr2	+	366	1	Intergenic	novelGene_2305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCACCATGTGGTTGCT	NA	False	NA	NA	False	NA	NA	NA	91625727	91626093	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_91625700_91626100
ES_00035220	chr2	+	201	1	Intergenic	novelGene_2306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAACAAAAAGAAAGCA	7286	False	NA	NA	False	NA	NA	NA	91738221	91738422	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_91738200_91738400
ES_00035221	chr2	+	201	1	Intergenic	novelGene_2310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTGGATTTCTTAGAC	NA	False	NA	NA	False	NA	NA	NA	92037670	92037871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_92037700_92037900
ES_00035222	chr2	+	203	1	Intergenic	novelGene_2321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCATTCTTGCTACTC	NA	False	NA	NA	False	NA	NA	NA	103718230	103718433	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_103718200_103718400
ES_00035223	chr2	+	209	1	Intergenic	novelGene_2326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTCTGCCCACCTAGGA	NA	False	NA	NA	False	NA	NA	NA	105194898	105195107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_105194900_105195100
ES_00035224	chr2	+	202	1	Intergenic	novelGene_2330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGGTTCTGAACCT	5614	False	NA	NA	False	NA	NA	NA	109699226	109699428	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_109699200_109699400
ES_00035225	chr2	+	214	1	Intergenic	novelGene_2349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCTGTTCTAACATTAT	6419	False	NA	NA	False	AAAACA	-9	NA	121411565	121411779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121411600_121411800
ES_00035226	chr2	+	250	1	Intergenic	novelGene_2352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAGAGAGAACCTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	121608205	121608455	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_121608200_121608500
ES_00035227	chr2	+	201	1	Intergenic	novelGene_2362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGGCAACACTTTTAAAGC	NA	False	NA	NA	False	NA	NA	NA	128601405	128601606	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_128601400_128601600
ES_00035228	chr2	+	545	1	Intergenic	novelGene_2375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTACATGGCTAGGTG	NA	False	NA	NA	False	AATAAA	-25	NA	142419906	142420451	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_142419900_142420500
ES_00035229	chr2	+	222	1	Intergenic	novelGene_2382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCTTTTTTGAGACAT	NA	False	NA	NA	False	ACTAAA	-22	NA	146381534	146381756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_146381500_146381800
ES_00035230	chr2	+	725	1	Intergenic	novelGene_2385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCATAACTGTCCTCTTA	NA	False	NA	NA	False	NA	NA	NA	150093617	150094342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_150093600_150094300
ES_00035231	chr2	+	236	1	Intergenic	novelGene_2390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCTCCAGCCCATGAAGT	291	False	NA	NA	False	NA	NA	NA	152687480	152687716	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_152687500_152687700
ES_00035232	chr2	+	608	1	Intergenic	novelGene_2397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAATATGTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	154271896	154272504	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_154271900_154272500
ES_00035233	chr2	+	236	1	Intergenic	novelGene_2412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATTGAATTTTAAAAAAGG	1814	False	NA	NA	False	NA	NA	NA	158330178	158330414	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_158330200_158330400
ES_00035234	chr2	+	204	1	Intergenic	novelGene_2417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGGCATTATTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	163341140	163341344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_163341100_163341300
ES_00035235	chr2	+	204	1	Intergenic	novelGene_2425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACTTTTTAACAAAAATTA	1380	False	NA	NA	False	NA	NA	NA	165876418	165876622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_165876400_165876600
ES_00035236	chr2	+	238	1	Intergenic	novelGene_2432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGGGTTTGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	167294357	167294595	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_167294400_167294600
ES_00035237	chr2	+	204	1	Intergenic	novelGene_2436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGGGCAAAGCTTTAAAAT	842	False	NA	NA	False	NA	NA	NA	168082133	168082337	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168082100_168082300
ES_00035238	chr2	+	203	1	Intergenic	novelGene_2439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGTGTGTTCTAACAT	NA	False	NA	NA	False	NA	NA	NA	168224722	168224925	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168224700_168224900
ES_00035239	chr2	+	205	1	Intergenic	novelGene_2446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGCTTTCTTAAACTTC	NA	False	NA	NA	False	NA	NA	NA	168756201	168756406	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_168756200_168756400
ES_00035240	chr2	+	203	1	Intergenic	novelGene_2455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGTTTTCTAGAAGAAAAG	10002	False	NA	NA	False	NA	NA	NA	170143671	170143874	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr2_+_170143700_170143900
ES_00035247	chr3	+	1485	1	FSM	ENSMUSG00000091223.3	ENSMUST00000170943.3	1327	1	-209	51	-209	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGACCAAATTCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	4276568	4278053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_4276600_4278100
ES_00035248	chr3	+	494	1	FSM	ENSMUSG00000103034.2	ENSMUST00000192045.2	490	1	-4	0	-4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGCACAGAGCTTAACAA	NA	False	NA	NA	False	AATAAA	-33	NA	5815861	5816355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_5815900_5816400
ES_00035249	chr3	+	3298	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	-78	72	-78	-72	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTGTTATGTTTATT	NA	False	NA	-62	True	AATAAA	-17	NA	7568464	7618824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ES_00035250	chr3	+	2377	1	FSM	ENSMUSG00000103921.2	ENSMUST00000195307.2	2177	1	29	-229	29	229	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCTAAATGATCCAAAATC	NA	False	NA	NA	False	NA	NA	NA	8392619	8394996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_8392600_8395000
ES_00035251	chr3	+	2073	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574419	8626666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ES_00035252	chr3	+	7491	6	FSM	ENSMUSG00000069114.9	ENSMUST00000155203.2	7414	6	-77	0	-77	0	multi-exon	FALSE	canonical	3	53	junction_5	6.07947366142827	1825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCTGGCTTTGTGAAT	NA	False	NA	NA	False	TATAAA	-16	NA	9315584	9350393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_9317141_9329594_9330481_9343313_9343413_9345015_9345193_9345350_9345524_9345793
ES_00035253	chr3	+	987	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAATGGTGTGATTATA	NA	False	NA	NA	False	AATAAA	-14	NA	10077607	10081667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
ES_00035254	chr3	+	2842	2	FSM	ENSMUSG00000027533.11	ENSMUST00000123744.2	3238	2	396	0	396	0	multi-exon	FALSE	canonical	3	417	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGATATGTGTGTGGGT	NA	False	NA	NA	False	AATAAA	-15	NA	10078060	10081395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_10080634_10081126
ES_00035255	chr3	+	1722	1	NIC	ENSMUSG00000049230.9	novel	1830	2	NA	NA	3	-2731	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACTTATTTAAAGCTTAC	NA	False	NA	NA	False	NA	NA	NA	10153172	10154894	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_10153200_10154900
ES_00035256	chr3	+	1683	2	NNC	ENSMUSG00000049230.9	novel	1830	2	NA	NA	-1	-2723	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGCTTACCAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	10153168	10154902	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_10154293_10154343
ES_00035257	chr3	+	255	1	FSM	ENSMUSG00000104434.2	ENSMUST00000193088.2	132	1	33	-156	33	156	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAGGAAAAAAAGAAAAG	9207	False	NA	NA	False	AATAAA	-25	NA	10297272	10297527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_10297300_10297500
ES_00035258	chr3	+	6202	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTATCCTATTTCTTT	NA	False	NA	1	True	ATTAAA	-16	NA	10431952	10460397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ES_00035259	chr3	+	2854	1	FSM	ENSMUSG00000095661.2	ENSMUST00000066794.9	2798	1	-49	-7	-49	7	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAATAGTAAGGATAAAC	NA	False	NA	NA	False	AATAAA	-39	NA	12920846	12923700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_12920800_12923700
ES_00035260	chr3	+	2659	2	Genic_Genomic	ENSMUSG00000095661.2	novel	2798	1	NA	NA	-38	-8	multi-exon	TRUE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-24	NA	12920857	12923685	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_12921867_12922035
ES_00035261	chr3	+	338	1	FSM	ENSMUSG00000103735.2	ENSMUST00000195564.2	343	1	-3	8	-3	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAACTGCTCCTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	13040415	13040753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_13040400_13040800
ES_00035262	chr3	+	3395	19	FSM	ENSMUSG00000027550.15	ENSMUST00000091325.10	3391	19	-4	0	-3	0	multi-exon	FALSE	canonical	2	8	junction_6	18.5947689444845	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTTGATAATTGCACAC	NA	False	NA	NA	False	CATAAA	-26	NA	14598879	14631163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605127_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
ES_00035263	chr3	+	5638	19	FSM	ENSMUSG00000027550.15	ENSMUST00000169079.8	5638	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	12.3057750168542	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCATCATTTCTATGT	NA	False	NA	20	True	AATAAA	-20	NA	14598882	14633361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
ES_00035264	chr3	+	3129	18	NIC	ENSMUSG00000027550.15	novel	5638	19	NA	NA	-6	-55	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	17.280506848904	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAGCTATCATAATAAC	NA	False	NA	NA	False	AATAAA	-20	NA	14598932	14631108	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_14599083_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
ES_00035265	chr3	+	280	1	FSM	ENSMUSG00000090300.2	ENSMUST00000163943.2	280	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCCTTGTGTACTAAAA	NA	False	NA	NA	False	NA	NA	NA	14629461	14629741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14629500_14629700
ES_00035266	chr3	+	1801	8	FSM	ENSMUSG00000027552.15	ENSMUST00000029069.13	1779	8	-22	0	-22	0	multi-exon	FALSE	canonical	2	153	junction_3	25.3191868844518	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATCTTTGGGGGAATGTG	1900	False	NA	30	True	AATAAA	-23	NA	14643678	14671369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14644084_14652369_14652480_14653199_14653362_14666062_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
ES_00035268	chr3	+	2321	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	-22	0	-22	0	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCTTTTGGAAGAT	2157	False	NA	NA	False	AATAAA	-15	NA	14706764	14728062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ES_00035269	chr3	+	1995	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	-207	0	-52	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951280	14965830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ES_00035270	chr3	+	1742	8	NIC	ENSMUSG00000027562.13	novel	1788	7	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	37.7661980385333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951295	14965830	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_14951432_14951669_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ES_00035271	chr3	+	5315	6	FSM	ENSMUSG00000047213.15	ENSMUST00000191774.6	3196	6	-88	-2031	-64	0	multi-exon	FALSE	canonical	3	57	junction_2	175.937943605125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237311	16271201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_16237685_16238085_16238111_16241130_16241280_16243641_16243728_16257989_16259589_16268118
ES_00035272	chr3	+	5344	7	NIC	ENSMUSG00000047213.15	novel	4929	6	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	168.232395479851	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237315	16271201	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_16237685_16238085_16238111_16241130_16241280_16243641_16243728_16257350_16257384_16257989_16259589_16268118
ES_00035273	chr3	+	5199	6	FSM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	-88	-182	-64	0	multi-exon	FALSE	canonical	3	147	junction_4	138.147167904377	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237311	16271201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257350_16257384_16257989_16259589_16268118
ES_00035274	chr3	+	5102	5	FSM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	82.6211232070831	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237375	16271201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257989_16259589_16268118
ES_00035275	chr3	+	2429	1	FSM	ENSMUSG00000082896.2	ENSMUST00000119417.2	2191	1	-60	-178	-60	178	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTATAAGACGTAACGT	8404	False	NA	NA	False	NA	NA	NA	18062909	18065338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_18062900_18065300
ES_00035277	chr3	+	2892	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	55	6	55	-6	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTATTTGTATATT	NA	False	NA	44	True	AATAAA	-30	NA	19242328	19274975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ES_00035278	chr3	+	574	2	FSM	ENSMUSG00000027601.14	ENSMUST00000131053.2	764	2	0	190	0	-190	multi-exon	FALSE	canonical	3	1210	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGATGGTCCACTTTCCT	NA	False	NA	NA	False	NA	NA	NA	19265735	19270196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_19265748_19269634
ES_00035279	chr3	+	1251	1	FSM	ENSMUSG00000104031.2	ENSMUST00000194477.2	1147	1	-199	95	-199	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATTTTCCCACAAACTTA	2569	False	NA	NA	False	NA	NA	NA	19988206	19989457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_19988200_19989500
ES_00035280	chr3	+	4954	25	FSM	ENSMUSG00000002428.13	ENSMUST00000002502.12	4955	25	1	0	1	0	multi-exon	FALSE	canonical	3	160	junction_12	28.4765680965168	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTCACTTAGTGACT	6939	False	NA	16	True	AATAAA	-20	NA	20111975	20172654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
ES_00035282	chr3	+	3944	26	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	-31	6	combination_of_known_junctions	FALSE	canonical	3	76	junction_25	37.5784193387641	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTCTTTGGTGTCACT	6907	False	NA	8	True	AATAAA	-12	NA	20111943	20172646	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735_20170908_20171941
ES_00035283	chr3	+	3705	25	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	6	-1	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	54.8140163542947	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGTGTCACTTAGTGAC	6986	False	NA	15	True	AATAAA	-19	NA	20112022	20172653	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_20112172_20113062_20113271_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735_20170908_20171941
ES_00035284	chr3	+	1083	1	FSM	ENSMUSG00000039617.9	ENSMUST00000117148.2	684	1	-117	-282	-117	282	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGATCCTTTTTTCCCTG	NA	False	NA	NA	False	ATTAAA	-20	NA	21103611	21104694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_21103600_21104700
ES_00035285	chr3	+	525	1	NIC	ENSMUSG00000105440.2	novel	909	4	NA	NA	8944	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACCCTGACCATTGCTG	NA	False	NA	NA	False	NA	NA	NA	21765922	21766447	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_21765900_21766400
ES_00035286	chr3	+	901	5	FSM	ENSMUSG00000027630.14	ENSMUST00000200943.4	376	5	-525	0	-241	0	multi-exon	FALSE	canonical	3	39	junction_1	99.506281208776	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGCAGTATGTAGAGG	NA	False	NA	NA	False	NA	NA	NA	22130574	22242635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_22131119_22157030_22157112_22203105_22203173_22233366_22233470_22242529
ES_00035287	chr3	+	8632	19	NNC	ENSMUSG00000027630.14	novel	8237	17	NA	NA	-241	6	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_3	92.3298568672984	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTACTAATGTTTCTTG	NA	False	NA	17	True	ATTAAA	-29	NA	22130574	22270764	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_22131119_22143576_22143687_22157030_22157112_22197167_22197235_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ES_00035289	chr3	+	8052	16	FSM	ENSMUSG00000027630.14	ENSMUST00000202747.4	4209	16	0	-3843	0	0	multi-exon	FALSE	canonical	3	160	junction_1	26.4420540469575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGACAATTACTAATGT	NA	False	NA	11	True	ATTAAA	-23	NA	22130890	22270758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_22131119_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ES_00035291	chr3	+	523	2	Genic_Genomic	ENSMUSG00000057036.8	novel	444	1	NA	NA	0	15093	multi-exon	FALSE	non_canonical	0	0	junction_1	0	435	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAACAGAATGTATAC	NA	False	NA	NA	False	NA	NA	NA	24387231	24402768	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_24387718_24402731
ES_00035294	chr3	+	4480	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	11.2333209693305	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGCCTCTGGCCCTTCCC	5568	False	NA	10	True	AATAAA	-17	NA	27237113	27299107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
ES_00035296	chr3	+	430	1	FSM	ENSMUSG00000027692.17	ENSMUST00000195094.2	1285	1	-311	1166	-5	-1166	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGAACGTGTTTTTTC	4112	False	NA	NA	False	NA	NA	NA	28317419	28317849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28317400_28317800
ES_00035298	chr3	+	945	6	FSM	ENSMUSG00000027692.17	ENSMUST00000159733.2	967	6	0	22	0	-22	multi-exon	FALSE	canonical	3	16	junction_1	2.41660919471891	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCACCAAAAAAAAAAAAAA	6212	False	NA	NA	False	AAGAAA	-20	NA	28704175	28720072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828
ES_00035299	chr3	+	2687	1	FSM	ENSMUSG00000027692.17	ENSMUST00000192205.2	1904	1	1053	-1836	1053	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCCTTTTATATTTTT	521	False	NA	11	True	AATAAA	-21	NA	28722047	28724734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28722000_28724700
ES_00035301	chr3	+	3438	5	NNC	ENSMUSG00000050192.9	novel	5027	5	NA	NA	69	-1480	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	36.9281396769455	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATTTAAGCTATCTGGT	NA	False	NA	2	True	AATAAA	-14	NA	28835493	28851515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_28835563_28836164_28836366_28836876_28836982_28847873_28847966_28848544
ES_00035303	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	1421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859617	28861573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ES_00035304	chr3	+	554	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	-2	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859656	28861571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
ES_00035305	chr3	+	631	2	FSM	ENSMUSG00000039221.11	ENSMUST00000191691.2	590	2	-41	0	0	0	multi-exon	FALSE	canonical	3	7992	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACATGTATGGTTCAT	NA	False	NA	11	True	AATAAA	-16	NA	28860606	28861565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28861008_28861335
ES_00035307	chr3	+	4073	7	FSM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	-546	-133	26	0	multi-exon	FALSE	canonical	3	28	junction_5	66.6243615770955	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8239	False	NA	NA	False	AATAAA	-35	NA	30656239	30672650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
ES_00035309	chr3	+	2028	6	FSM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	64	0	64	0	multi-exon	FALSE	canonical	3	7	junction_1	18.0177690072883	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAATTAATGAAAATAA	NA	False	NA	NA	False	AATAAA	-13	NA	30702098	30726448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30702410_30704053_30705102_30709785_30709960_30713202_30713342_30714049_30714247_30726289
ES_00035310	chr3	+	798	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10825	4	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGTGGGAAGAATGATAT	NA	False	NA	9	True	NA	NA	NA	30712859	30726584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_30713166_30714049_30714247_30726289
ES_00035312	chr3	+	3969	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	-2	0	-2	0	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGCAGTAGTGATGGATT	NA	False	NA	NA	False	AATAAA	-21	NA	30847021	30875412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ES_00035313	chr3	+	1716	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	-29	2	-29	0	multi-exon	FALSE	canonical	3	44	junction_2	125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910069	30951339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30910207_30931383_30931482_30949858
ES_00035315	chr3	+	2043	5	NIC	ENSMUSG00000037661.15	novel	754	5	NA	NA	13	-31	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	77.9947914927657	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGGTATAAATAAAATATA	NA	False	NA	1	True	AATAAA	-14	NA	30910111	30951308	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30948277_30948390_30949858
ES_00035316	chr3	+	1793	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	-49	-1398	-6	0	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910092	30951339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
ES_00035317	chr3	+	1977	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910137	30951339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
ES_00035318	chr3	+	1934	4	NIC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910139	30951339	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
ES_00035319	chr3	+	2139	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108258.8	2139	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	77.1895214535122	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30949858
ES_00035320	chr3	+	1834	5	NIC	ENSMUSG00000037661.15	novel	1977	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	111.904814463007	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_30910207_30931383_30931482_30944090_30944191_30948277_30948390_30949858
ES_00035322	chr3	+	2251	5	FSM	ENSMUSG00000037661.15	ENSMUST00000147697.2	754	5	-128	-1369	0	0	multi-exon	FALSE	canonical	3	39	junction_4	24.6018292002851	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30948277_30948390_30949858
ES_00035325	chr3	+	6815	7	FSM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	-237	0	-237	0	multi-exon	FALSE	canonical	0	0	junction_2	38.1113135725105	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTTGGTTCAAGTCAT	NA	False	NA	14	True	AATAAA	-16	NA	31148969	31176722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167652_31170964_31171189_31171521_31171747_31172603
ES_00035326	chr3	+	7010	7	FSM	ENSMUSG00000027660.17	ENSMUST00000029194.12	6717	7	-297	4	-294	0	multi-exon	FALSE	canonical	0	0	junction_2	41.5668805126817	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTTGGTTCAAGTCAT	NA	False	NA	14	True	AATAAA	-16	NA	31148912	31176722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167790_31170964_31171189_31171521_31171747_31172603
ES_00035327	chr3	+	6876	21	NNC	ENSMUSG00000027665.14	novel	8917	20	NA	NA	-457	38	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_2	13.8524366087703	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGCCCTCTTGACTT	NA	False	NA	133	True	NA	NA	NA	32451362	32520294	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_32451642_32490278_32490707_32491266_32491477_32491965_32492217_32493852_32494099_32494775_32494862_32496874_32496981_32497727_32497881_32497963_32498099_32502103_32502229_32503671_32503754_32504057_32504223_32504410_32504515_32505904_32506077_32508009_32508117_32508527_32508650_32510241_32510321_32514010_32514182_32515628_32515747_32515845_32515998_32516709
ES_00035328	chr3	+	8851	20	FSM	ENSMUSG00000027665.14	ENSMUST00000029201.14	8917	20	0	66	0	-66	multi-exon	FALSE	canonical	3	74	junction_1	13.8737880357109	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAATCCGTGCTTCAAAT	7005	False	NA	NA	False	NA	NA	NA	32490299	32522569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32490707_32491266_32491477_32491965_32492217_32493852_32494099_32494775_32494862_32496874_32496981_32497727_32497881_32497963_32498099_32502103_32502229_32503671_32503754_32504057_32504223_32504410_32504515_32505904_32506077_32508009_32508117_32508527_32508650_32510241_32510321_32514010_32514182_32515628_32515747_32515845_32515998_32516709
ES_00035329	chr3	+	1988	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ES_00035330	chr3	+	2049	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	162	0	-114	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTCATAGTTACCACT	3068	False	NA	112	True	AATATA	-32	NA	32564569	32574982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ES_00035331	chr3	+	4559	18	FSM	ENSMUSG00000027668.14	ENSMUST00000091257.11	4562	18	3	0	3	0	multi-exon	FALSE	canonical	3	429	junction_6	42.8432404539521	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTCAGTTAGTGA	NA	False	NA	NA	False	AATAAA	-29	NA	32583616	32633388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32583845_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
ES_00035332	chr3	+	2948	18	NNC	ENSMUSG00000027668.14	novel	4562	18	NA	NA	0	324	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	131.010129300138	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAGGCCTATCATTGTAG	NA	False	NA	20	True	ATTAAA	-17	NA	32583679	32631826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_32583845_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617643_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
ES_00035336	chr3	+	922	8	FSM	ENSMUSG00000027671.15	ENSMUST00000126144.3	922	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	495.700617349642	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTACCCTTACTGTCT	NA	False	NA	NA	False	NA	NA	NA	32763312	32772805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32763492_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715
ES_00035340	chr3	+	9564	10	FSM	ENSMUSG00000027677.18	ENSMUST00000099153.10	9661	10	97	0	97	0	multi-exon	FALSE	canonical	3	147	junction_6	17.9285275124711	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCAGCTGTTCCCTCAA	NA	False	NA	NA	False	AATAAA	-24	NA	33854077	33869009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
ES_00035342	chr3	+	11854	10	FSM	ENSMUSG00000027677.18	ENSMUST00000200271.5	2724	10	0	-9130	0	2314	multi-exon	FALSE	canonical	2	24	junction_1	52.1578799841831	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTGTTTTTATTGAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	33854339	33871323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33854824_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
ES_00035343	chr3	+	2448	9	NIC	ENSMUSG00000027677.18	novel	2724	10	NA	NA	-9	0	intron_retention	FALSE	canonical	3	147	junction_5	18.1779399272855	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTGTGTCCTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	33854349	33861646	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
ES_00035344	chr3	+	2460	12	FSM	ENSMUSG00000027677.18	ENSMUST00000199222.5	2438	12	-22	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	51.4495660937939	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAAGGCTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	33854339	33863826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33862004_33862098_33862834
ES_00035345	chr3	+	4913	11	FSM	ENSMUSG00000027677.18	ENSMUST00000117915.8	4913	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	63.6361532464055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAATATCTACCTCCAGT	NA	False	NA	NA	False	AATAAA	-33	NA	33854361	33866440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
ES_00035346	chr3	+	2684	12	FSM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_10	47.3543002489332	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTGGGGTAGAATATATG	NA	False	NA	-75	True	AAGAAA	-39	NA	33854399	33864093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
ES_00035347	chr3	+	2445	17	FSM	ENSMUSG00000027680.16	ENSMUST00000001620.13	2459	17	14	0	14	0	multi-exon	FALSE	canonical	3	36	junction_14	394.615947591769	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTATTTTGTTTTCAA	4708	False	NA	17	True	ATTAAA	-20	NA	34074105	34123491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
ES_00035348	chr3	+	3869	15	FSM	ENSMUSG00000105176.2_ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	-148	-1594	14	617	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTGGGACTTGAAGTGT	4708	False	NA	NA	False	NA	NA	NA	34074105	34125088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
ES_00035349	chr3	+	2132	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-3	0	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4856	False	NA	20	True	ATTAAA	-23	NA	34074253	34123494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ES_00035350	chr3	+	3017	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	-3	0	0	0	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTAAGCAGTTTTTAATA	4856	False	NA	15	True	ATTAAA	-16	NA	34074253	34124471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ES_00035355	chr3	+	2935	22	FSM	ENSMUSG00000037400.18	ENSMUST00000200445.5	3028	22	0	93	0	-93	multi-exon	FALSE	canonical	2	8	junction_21	105.101268517516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTATGATGGCTAGACT	NA	False	NA	NA	False	NA	NA	NA	35808282	35883744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35883565
ES_00035356	chr3	+	4868	30	FSM	ENSMUSG00000037400.18	ENSMUST00000029257.15	4868	30	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_18	53.5097310762941	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTGTTGCATGTTATC	NA	False	NA	11	True	AATAAA	-17	NA	35808282	35910425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
ES_00035357	chr3	+	6322	29	FSM	ENSMUSG00000037400.18	ENSMUST00000196700.5	6322	29	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_18	53.267171706715	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCCTGTTGTTGCATG	NA	False	NA	6	True	AATAAA	-12	NA	35808282	35910420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35893364_35903582_35903714_35909253
ES_00035363	chr3	+	682	3	FSM	ENSMUSG00000027714.12	ENSMUST00000131316.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	10.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGCACAAGCTTCCC	2760	False	NA	4	True	AATAAA	-16	NA	36616244	36619794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_36616314_36617221_36617407_36619366
ES_00035366	chr3	+	2660	21	FSM	ENSMUSG00000037270.19	ENSMUST00000108145.9	3551	21	0	891	0	-891	multi-exon	FALSE	canonical	3	50	junction_4	8.90505474435727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATGTCAAATGACATATG	NA	False	NA	NA	False	NA	NA	NA	36918617	36985284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146
ES_00035368	chr3	+	4998	27	FSM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.87106224387655	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCATAGTTGTTTCATA	2147	False	NA	3	True	AATAAA	-17	NA	37065856	37107163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37065944_37067028_37067160_37068553_37068678_37075595_37075706_37076532_37076624_37077118_37077182_37080238_37080493_37082188_37082405_37084049_37084231_37084695_37084793_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ES_00035370	chr3	+	2504	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	-71	0	-71	0	multi-exon	FALSE	canonical	3	15	junction_1	0	981	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1180	False	NA	7	True	AATAAA	-19	NA	37366631	37375599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37366735_37373198
ES_00035372	chr3	+	2890	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
ES_00035373	chr3	+	2930	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	-14	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
ES_00035374	chr3	+	2916	17	NIC	ENSMUSG00000027722.15	novel	2916	17	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	83	junction_15	130.436227233848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTTCAGCTAGTTTTAT	NA	False	NA	2	True	AATAAA	-11	NA	37474448	37633236	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
ES_00035377	chr3	+	2527	3	FSM	ENSMUSG00000037211.13	ENSMUST00000038569.8	2481	3	-46	0	-35	0	multi-exon	FALSE	canonical	3	34	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGTGCATCTTTTTTT	NA	False	NA	NA	False	AATATA	-19	NA	37694060	37698747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37694255_37694668_37694958_37696703
ES_00035378	chr3	+	2773	2	FSM	ENSMUSG00000037211.13	ENSMUST00000108107.2	2773	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGTGCATCTTTTTTT	NA	False	NA	NA	False	AATATA	-19	NA	37694228	37698747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37694958_37696703
ES_00035382	chr3	+	1148	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	7	50157	7	1	5prime_fragment	FALSE	canonical	3	119	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCACTTGAGAACACC	NA	False	NA	2	True	AATAAA	-18	NA	40594922	40609047	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_40595159_40608135
ES_00035388	chr3	+	2497	10	FSM	ENSMUSG00000025762.17	ENSMUST00000048490.13	2497	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	8.10273540155757	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATGCTTCAAAATTGTT	NA	False	NA	2	True	AATAAA	-15	NA	40904262	40932217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_40905120_40916042_40916102_40916603_40916664_40918402_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
ES_00035391	chr3	+	543	6	FSM	ENSMUSG00000025764.15	ENSMUST00000195846.6	543	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	307.637709002001	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCTGGACGAGTACACC	NA	False	NA	NA	False	NA	NA	NA	41510194	41551055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548237_41548390_41551049
ES_00035392	chr3	+	5513	11	FSM	ENSMUSG00000025764.15	ENSMUST00000163764.8	5584	11	71	0	29	0	multi-exon	FALSE	canonical	2	12	junction_1	237.242260147723	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTGTCTGTTGAAAT	NA	False	NA	13	True	AATAAA	-22	NA	41517874	41571293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_41518002_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
ES_00035396	chr3	+	3559	7	FSM	ENSMUSG00000025766.15	ENSMUST00000146165.8	3574	7	15	0	15	0	multi-exon	TRUE	canonical	3	22	junction_1	8.72576007513895	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697067	41713374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
ES_00035400	chr3	+	3007	3	FSM	ENSMUSG00000023087.16	ENSMUST00000023849.15	3059	3	52	0	29	0	multi-exon	FALSE	canonical	3	120	junction_1	3.5	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTCTAAAAGGAATCTG	9198	False	NA	27	True	AATAAA	-36	NA	51131919	51159065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_51132709_51155225_51155496_51157117
ES_00035408	chr3	+	4472	13	FSM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	9.75071222469871	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTATAGAAGTGTTTT	NA	False	NA	18	True	AATAAA	-14	NA	53371086	53389176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382832_53383077_53383123_53384903_53386588_53386980_53387132_53387932
ES_00035409	chr3	+	1962	7	FSM	ENSMUSG00000049504.13	ENSMUST00000141418.2	1519	7	-328	-115	-62	115	multi-exon	FALSE	canonical	3	46	junction_1	7.95124029458437	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGCCCTTGAGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	53371024	53381715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904
ES_00035411	chr3	+	2766	27	FSM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	-15	0	-15	0	multi-exon	FALSE	canonical	3	259	junction_20	89.4210256174979	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTACATACCAATCGCAG	NA	False	NA	-92	True	NA	NA	NA	54600212	54636057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ES_00035413	chr3	+	2899	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	6	-83	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_20	93.1009504905751	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTTTGCATTGCTGTGT	NA	False	NA	NA	False	AATGAA	-30	NA	54600233	54635974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ES_00035420	chr3	+	3761	26	FSM	ENSMUSG00000027751.14	ENSMUST00000200439.2	3753	26	-8	0	0	0	multi-exon	FALSE	canonical	3	84	junction_19	108.108641652737	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600525	54636184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ES_00035423	chr3	+	1471	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_5	39.5777091521022	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTGTCCTCTTCCTTG	NA	False	NA	18	True	AATAAA	-22	NA	54642959	54657216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ES_00035425	chr3	+	3801	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	-36	5	-36	0	multi-exon	TRUE	canonical	0	0	junction_4	65.469339197826	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTCAGATGTATTCAC	NA	False	NA	16	True	AATAAA	-17	NA	55019492	55044738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ES_00035426	chr3	+	3588	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	-21	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	57.8710741604975	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55019528	55044732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ES_00035430	chr3	+	2021	9	FSM	ENSMUSG00000036503.14	ENSMUST00000198214.5	2027	9	0	6	0	-6	multi-exon	FALSE	canonical	0	0	junction_8	54.9816730829465	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTATTGGCTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	57643505	57733715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57732522
ES_00035432	chr3	+	230	1	FSM	ENSMUSG00000036503.14	ENSMUST00000197783.2	3873	1	496	3147	496	-981	mono-exon	FALSE	NA	NA	NA	NA	NA	2210	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACTCCAGAGATGGAACT	NA	False	NA	NA	False	NA	NA	NA	57708721	57708951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_57708700_57709000
ES_00035438	chr3	+	3157	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ES_00035439	chr3	+	3129	7	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	55	junction_6	24.8758026112838	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115_58499681_58499708
ES_00035444	chr3	+	5663	10	NIC	ENSMUSG00000027763.14	novel	5151	9	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	38.8857141561281	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTGCCTGAGATTG	NA	False	NA	26	True	AATAAA	-38	NA	60408607	60537169	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_60408845_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60529566_60529662_60532544_60532620_60533800
ES_00035446	chr3	+	5151	9	FSM	ENSMUSG00000027763.14	ENSMUST00000193517.6	5151	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	29.77388746872	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTGCCTGAGATTG	NA	False	NA	26	True	AATAAA	-38	NA	60436451	60537169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60529566_60529662_60532544_60532620_60533800
ES_00035455	chr3	+	6451	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-36	-1714	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACATACTAAGAACATTGT	NA	False	NA	NA	False	AATAAA	-16	NA	63202832	63291737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ES_00035456	chr3	+	3782	23	FSM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	72.8286793023574	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTACAGTCCTTATTTT	NA	False	NA	11	True	TATAAA	-15	NA	63203515	63289044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ES_00035458	chr3	+	223	2	ISM	ENSMUSG00000093671.2	ENSMUST00000176925.2	518	4	4717	3	4717	-3	3prime_fragment	FALSE	canonical	3	230	junction_1	0	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAATGCTTTGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	64360104	64367513	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_64360229_64367414
ES_00035465	chr3	+	3140	10	NIC	ENSMUSG00000034544.18	novel	3224	10	NA	NA	0	-55	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	104.560455665079	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAAGCTTTGTTTGGTTT	NA	False	NA	-45	True	AATAAA	-4	NA	66893004	67265668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_66893116_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ES_00035473	chr3	+	2170	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	-14	0	-14	0	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68401526	68533796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ES_00035474	chr3	+	1616	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	114	0	114	0	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTTTTGCTCACTAA	NA	False	NA	22	True	AATAAA	-24	NA	68479691	68533797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ES_00035477	chr3	+	1163	8	FSM	ENSMUSG00000034349.15	ENSMUST00000136502.8	1163	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	229.368609848151	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68912302	68925441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_68912449_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
ES_00035484	chr3	+	3783	9	FSM	ENSMUSG00000027804.14	ENSMUST00000161460.8	3777	9	-6	0	-6	0	multi-exon	FALSE	canonical	3	2177	junction_4	229.457478359281	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAATCTCATTTTAAAAT	NA	False	NA	16	True	AATAAA	-15	NA	79498642	79510583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_79498865_79500916_79501058_79502508_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ES_00035485	chr3	+	1772	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	-20	0	3	0	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	29	True	AATAAA	-19	NA	79498651	79510957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ES_00035486	chr3	+	1972	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	-2	0	-2	0	multi-exon	FALSE	canonical	3	150	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4367	False	NA	NA	False	AATAAA	-14	NA	79536383	79540127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_79536664_79538435
ES_00035492	chr3	+	2086	9	FSM	ENSMUSG00000033860.14	ENSMUST00000194175.2	1741	9	-4	-341	-4	-3	multi-exon	FALSE	canonical	3	22	junction_4	1.69096865730859	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATGAGACATTCCGTGG	NA	False	NA	NA	False	AATAAA	-13	NA	82915163	82922353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444
ES_00035497	chr3	+	5073	13	NIC	ENSMUSG00000028086.16	novel	4473	14	NA	NA	-664	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	21.8649580125115	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGCCTGTTTCTTCCACT	NA	False	NA	25	True	AATAAA	-19	NA	84721910	84886505	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_84723077_84771270_84771319_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ES_00035502	chr3	+	5237	22	NNC	ENSMUSG00000028082.15	novel	7217	21	NA	NA	27	-633	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_17	46.6053533074914	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGACTACACTGCATTG	NA	False	NA	12	True	AATAAA	-26	NA	85878442	86035784	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_85878732_85948132_85948173_85982454_85982496_85987701_85987745_85990533_85990673_85990808_85990963_85991674_85992665_86000996_86001105_86005453_86005567_86010196_86010259_86011389_86011655_86014276_86014346_86014518_86014660_86020412_86020486_86022093_86022225_86024125_86024185_86026672_86026769_86027836_86028040_86028440_86028494_86030452_86030640_86030992_86031091_86033901
ES_00035506	chr3	+	5138	5	FSM	ENSMUSG00000003382.19	ENSMUST00000119109.8	5309	5	171	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	13.4605906259718	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATGTTTGCTGAGTAT	NA	False	NA	NA	False	ATTAAA	-24	NA	87432884	87447463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87432967_87434567_87434624_87435176_87435415_87436530_87436647_87442817
ES_00035510	chr3	+	2245	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	0	0	0	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813627	87823439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
ES_00035514	chr3	+	1240	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	-14	0	-14	0	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826798	87830979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ES_00035515	chr3	+	1115	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826869	87830979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ES_00035516	chr3	+	1234	5	FSM	ENSMUSG00000019710.14	ENSMUST00000121048.2	1234	5	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_2	28.5744641244591	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87828915	87830979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ES_00035518	chr3	+	930	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	1	0	1	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8832	False	NA	8	True	ATTAAA	-19	NA	87855973	87860683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
ES_00035520	chr3	+	6192	4	FSM	ENSMUSG00000004891.17	ENSMUST00000090973.12	6126	4	-66	0	-51	0	multi-exon	FALSE	canonical	3	22	junction_3	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCTGCTTTCTTCTA	NA	False	NA	10	True	AATAAA	-20	NA	87878333	87887758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87879296_87880298_87880424_87882108_87882183_87882727
ES_00035525	chr3	+	1893	9	FSM	ENSMUSG00000028069.17	ENSMUST00000166021.8	1768	9	-128	3	-128	0	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	1591	False	NA	36	True	TTTAAA	-25	NA	87950286	87963297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ES_00035528	chr3	+	5401	11	FSM	ENSMUSG00000001419.18	ENSMUST00000001455.13	5401	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	33.5177564881661	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGTTTGGGTTTTGATT	6538	False	NA	17	True	ATTAAA	-29	NA	88049678	88079393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075344_88075652_88075938
ES_00035534	chr3	+	1825	12	FSM	ENSMUSG00000001416.14	ENSMUST00000164166.8	1804	12	-21	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	744.224284153619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3841	False	NA	22	True	ATTAAA	-14	NA	88204459	88229073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ES_00035535	chr3	+	1943	13	FSM	ENSMUSG00000001416.14	ENSMUST00000168062.8	1943	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	126.158630303281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGGCAAACTGGTGCT	3876	False	NA	NA	False	NA	NA	NA	88204494	88228814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
ES_00035549	chr3	+	1059	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	0	0	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3557	False	NA	15	True	AATAAA	-17	NA	88486914	88495726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ES_00035550	chr3	+	1193	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	-4	0	0	0	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3616	False	NA	15	True	AATAAA	-17	NA	88486973	88495726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ES_00035553	chr3	+	5845	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	-38	1480	intron_retention	FALSE	canonical	3	121	junction_5	65.9201871537101	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGTGAGTTGGGTGAT	8580	False	NA	NA	False	ATTAAA	-20	NA	88522635	88556839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00035555	chr3	+	4572	23	FSM	ENSMUSG00000028059.17	ENSMUST00000177498.8	3966	23	-90	-516	-90	0	multi-exon	FALSE	canonical	3	97	junction_1	70.6950294581072	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGGCTGGAAATGAAGCG	9304	False	NA	11	True	ATTAAA	-13	NA	88523359	88555355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00035556	chr3	+	4495	23	FSM	ENSMUSG00000028059.17	ENSMUST00000176500.8	4492	23	-3	0	-3	0	multi-exon	FALSE	canonical	3	97	junction_1	58.4462916553691	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	9391	False	NA	15	True	ATTAAA	-17	NA	88523446	88555359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00035557	chr3	+	4313	22	FSM	ENSMUSG00000028059.17	ENSMUST00000029694.14	4300	22	-13	0	-13	0	multi-exon	FALSE	canonical	3	163	junction_1	44.2621032808889	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	NA	False	NA	15	True	ATTAAA	-17	NA	88528399	88555359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00035558	chr3	+	4257	22	NNC	ENSMUSG00000028059.17	novel	4300	22	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_20	90.8158286821687	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGGCTGGAAATGAAGCG	NA	False	NA	11	True	ATTAAA	-13	NA	88528444	88555355	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551538_88553481_88553668_88554096
ES_00035560	chr3	+	4390	22	FSM	ENSMUSG00000028059.17	ENSMUST00000107510.10	4390	22	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	68.5955314781911	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTGGAAATGAAGCGCC	NA	False	NA	13	True	ATTAAA	-15	NA	88528598	88555357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88528907_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00035565	chr3	+	2341	3	FSM	ENSMUSG00000028060.15	ENSMUST00000200622.2	571	3	0	-1770	0	0	multi-exon	FALSE	canonical	3	104	junction_1	146.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	629	False	NA	13	True	AATAAA	-14	NA	88616086	88620161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88616249_88617164_88617250_88618067
ES_00035566	chr3	+	465	5	FSM	ENSMUSG00000028057.15	ENSMUST00000171645.8	460	5	-5	0	-5	0	multi-exon	FALSE	canonical	2	4	junction_1	23.1192560433938	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTCGGGAGTTTAAACA	2250	False	NA	NA	False	NA	NA	NA	88624177	88633676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88624277_88624632_88624778_88624908_88624966_88633301_88633376_88633586
ES_00035571	chr3	+	6946	32	NIC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	-6	-593	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	88.6012944942465	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAAGACCCTACAAGCC	NA	False	NA	NA	False	NA	NA	NA	88742554	88816813	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_88742597_88744296_88744828_88753694_88753887_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777151_88787377_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ES_00035578	chr3	+	1860	12	ISM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	-40	950	5	0	5prime_fragment	FALSE	canonical	3	250	junction_3	91.6433979984058	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTACACTTTAATGTGG	NA	False	NA	5	True	AATAAA	-19	NA	89072106	89083278	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
ES_00035579	chr3	+	3187	11	FSM	ENSMUSG00000068917.13	ENSMUST00000138822.8	3168	11	-19	0	5	0	multi-exon	FALSE	canonical	3	370	junction_2	65.9302661908778	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCCCCCAATCCCTGGA	NA	False	NA	16	True	AATAAA	-17	NA	89072106	89084226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89072414_89074341_89074512_89076001_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00035580	chr3	+	2697	13	FSM	ENSMUSG00000068917.13	ENSMUST00000090927.12	2128	13	-18	-551	5	551	multi-exon	FALSE	canonical	3	115	junction_2	141.611043001596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGGAGCACAGGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	89072106	89084779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89072414_89074341_89074512_89076004_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00035581	chr3	+	2700	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121212.9	2154	13	5	-551	5	551	multi-exon	FALSE	canonical	3	173	junction_3	106.020045274467	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGGAGCACAGGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	89072106	89084779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00035582	chr3	+	2663	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	0	-551	0	551	multi-exon	FALSE	canonical	3	250	junction_3	89.4627094877463	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGGAGCACAGGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	89072146	89084779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00035583	chr3	+	3564	19	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2128	13	NA	NA	0	0	multi-exon	FALSE	canonical	3	115	junction_2	329.33569499828	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGAGCTACCATTCGT	NA	False	NA	NA	False	GGGGCT	-5	NA	89072146	89088583	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_89072414_89074341_89074512_89076004_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481
ES_00035584	chr3	+	4152	21	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2154	13	NA	NA	0	0	multi-exon	FALSE	canonical	3	173	junction_3	318.474975469031	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89072146	89090072	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ES_00035585	chr3	+	2103	13	NIC	ENSMUSG00000068917.13	novel	2112	13	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	115	junction_2	130.727664333997	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACCCCCCCCAATCCCT	NA	False	NA	13	True	AATAAA	-14	NA	89072147	89084223	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89072414_89074341_89074512_89076004_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00035586	chr3	+	2436	12	FSM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	0	-551	0	551	multi-exon	FALSE	canonical	3	39	junction_3	144.088987655672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGGAGCACAGGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	89072285	89084779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00035589	chr3	+	1489	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_2	141.598022585063	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ES_00035590	chr3	+	1492	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	-17	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ES_00035598	chr3	+	1950	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	-12	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110234	89115988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ES_00035601	chr3	+	572	2	FSM	ENSMUSG00000028047.12	ENSMUST00000153129.2	455	2	-70	-47	-70	-4	multi-exon	FALSE	canonical	3	14	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCAGTGCAATTGTTT	NA	False	NA	1	True	CATAAA	-15	NA	89133486	89134140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89133751_89133832
ES_00035606	chr3	+	486	1	FSM	ENSMUSG00000042737.10	ENSMUST00000137975.2	441	1	34	-79	34	79	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGGGGCAGGAGAACCAC	6898	False	NA	98	True	NA	NA	NA	89173979	89174465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89174000_89174500
ES_00035610	chr3	+	4647	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	-1114	-916	-119	0	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89327820	89337322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ES_00035612	chr3	+	2969	3	FSM	ENSMUSG00000047824.14	ENSMUST00000136573.8	584	3	0	-2385	0	0	multi-exon	FALSE	canonical	3	4	junction_1	130	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGACTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	89337520	89342435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89337761_89338433_89338484_89339756
ES_00035614	chr3	+	3436	2	FSM	ENSMUSG00000047824.14	ENSMUST00000125830.2	688	2	-608	-2140	0	4	multi-exon	FALSE	canonical	3	264	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACTCCTTTGTTCATCC	NA	False	NA	NA	False	AATAAA	-20	NA	89337730	89342439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89338484_89339756
ES_00035618	chr3	+	5790	15	NIC	ENSMUSG00000027951.17	novel	5909	15	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_7	26.0458778907919	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89622369	89660753	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ES_00035621	chr3	+	5882	15	FSM	ENSMUSG00000027951.17	ENSMUST00000107405.6	5871	15	-11	0	-11	0	multi-exon	FALSE	canonical	3	12	junction_1	32.9626411909864	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89638043	89660753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89638146_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ES_00035623	chr3	+	6257	7	NNC	ENSMUSG00000046280.10	novel	5733	6	NA	NA	-643	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	21.0844861344913	311	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACAGTCATTTGCTTT	2236	False	NA	23	True	AATAAA	-11	NA	89738033	89766141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_89739411_89741450_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837_89764484_89764602
ES_00035625	chr3	+	640	4	FSM	ENSMUSG00000105552.2	ENSMUST00000200257.2	640	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.18544972870135	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGAATTCTGACCTTTTC	NA	False	NA	NA	False	AAAACA	-13	NA	89906066	89908632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89906229_89906451_89906605_89907478_89907593_89908421
ES_00035628	chr3	+	1424	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	-13	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	165.248718267008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTTGTTTGGGCTTTG	NA	False	NA	NA	False	ATTAAA	-43	NA	89960135	89968301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
ES_00035630	chr3	+	1742	10	FSM	ENSMUSG00000118504.2	ENSMUST00000239076.2	1545	10	0	-197	0	0	multi-exon	FALSE	canonical	3	22	junction_7	192.823529633307	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTAGGCCACAGGGCTT	NA	False	NA	15	True	AAAAAG	-4	NA	89960210	89973376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89969240_89970515_89970557_89971731_89971862_89972816
ES_00035631	chr3	+	4193	8	NIC	ENSMUSG00000118504.2	novel	1545	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	130	junction_7	124.701930332178	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTAGGCCACAGGGCTT	NA	False	NA	15	True	AAAAAG	-4	NA	89960210	89973376	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89971862_89972816
ES_00035633	chr3	+	2360	5	FSM	ENSMUSG00000118504.2	ENSMUST00000239082.2	2360	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	40.2701812759764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTAGGCCACAGGGCTT	2604	False	NA	15	True	AAAAAG	-4	NA	89966049	89973376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89966108_89967668_89969240_89970515_89970557_89971731_89971862_89972816
ES_00035635	chr3	+	2385	4	FSM	ENSMUSG00000027940.19	ENSMUST00000131354.8	2374	4	-11	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	165.811807648175	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAGAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	89986960	89996903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980
ES_00035636	chr3	+	2195	9	FSM	ENSMUSG00000027940.19	ENSMUST00000118566.8	2190	9	0	-5	0	0	multi-exon	FALSE	canonical	3	10	junction_4	1696.75041899951	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89986960	90008208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_89998319_89998399_90006834
ES_00035637	chr3	+	1090	8	FSM	ENSMUSG00000027940.19	ENSMUST00000119158.8	1090	8	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_4	1700.12620179821	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTTGTAACTGCTTCATC	NA	False	NA	NA	False	AATAAA	-17	NA	89987021	90006090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_90005681
ES_00035640	chr3	+	1873	4	ISM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	8571	0	50	0	3prime_fragment	FALSE	canonical	3	3261	junction_1	44.8875137303113	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89995417	90008208	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_89995784_89997103_89997167_89997316_89997387_90006834
ES_00035647	chr3	+	2362	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	2	0	2	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	-1	True	AATAAA	-16	NA	90155480	90160919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
ES_00035653	chr3	+	2311	13	FSM	ENSMUSG00000027936.19	ENSMUST00000184882.2	2311	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.1089573882348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGTGTGCTTGGCTAT	NA	False	NA	NA	False	AATAAA	-14	NA	90164601	90171427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170220_90170288_90170477_90170665_90170786
ES_00035661	chr3	+	3181	7	FSM	ENSMUSG00000001016.13	ENSMUST00000198325.5	3164	7	-17	0	0	0	multi-exon	FALSE	canonical	3	1316	junction_1	43.5982288121382	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAAAAAGTAAAAG	NA	False	NA	NA	False	NA	NA	NA	90383446	90392769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083
ES_00035662	chr3	+	2048	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	-21	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383432	90395686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ES_00035678	chr3	+	395	2	FSM	ENSMUSG00000028145.10	ENSMUST00000196824.2	940	2	-1	546	-1	-546	multi-exon	FALSE	canonical	3	31	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAAAGTGTTGTTGCAGA	NA	False	NA	NA	False	AATAAA	-17	NA	94217435	94224931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94217596_94224696
ES_00035680	chr3	+	1231	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTGTATGTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	94320623	94333695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
ES_00035683	chr3	+	6439	18	FSM	ENSMUSG00000038902.15	ENSMUST00000107266.8	4100	18	-345	-1994	-199	0	multi-exon	FALSE	canonical	3	9	junction_2	17.1879494279083	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGTTAAGTATATC	NA	False	NA	16	True	AATAAA	-18	NA	94744678	94789637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94745052_94761260_94761386_94768106_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ES_00035689	chr3	+	2437	3	FSM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	-39	-4	-39	4	multi-exon	FALSE	canonical	1	7	junction_2	5.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTAGTGGTTTTATTTC	8572	False	NA	21	True	ATTAAA	-17	NA	95041359	95046833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95042308_95044935_95045298_95045706
ES_00035690	chr3	+	651	1	FSM	ENSMUSG00000098198.2	ENSMUST00000182930.2	536	1	-93	-22	-93	22	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATTAAAAGTAAACCTTA	NA	False	NA	NA	False	NA	NA	NA	95051588	95052239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95051600_95052200
ES_00035691	chr3	+	3702	20	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_2	28.2846629936582	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGCTGCCTGACTTTCC	NA	False	NA	9	True	AATACA	-12	NA	95067730	95080964	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95068024_95069925_95069975_95070437_95070583_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ES_00035693	chr3	+	3924	19	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	28.003967972811	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067767	95081335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95068010_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ES_00035695	chr3	+	3791	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	22.3489160462629	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATCAGCAAGTCTTGTC	NA	False	NA	17	True	AATAAA	-26	NA	95067816	95081333	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ES_00035700	chr3	+	2827	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	26.9118359384908	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ES_00035701	chr3	+	2800	10	FSM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	52.7870167352017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
ES_00035702	chr3	+	2255	10	NIC	ENSMUSG00000038712.17	novel	1812	9	NA	NA	532	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	70.8557916466716	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTTGCGTTCCTACCT	NA	False	NA	10	True	AATAAA	-11	NA	95194041	95203472	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95194184_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
ES_00035705	chr3	+	699	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-442	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	54.7052709221576	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATGATGAAGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	95334539	95337749	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_95334711_95334899_95335007_95335864_95336134_95337597
ES_00035706	chr3	+	1072	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-227	-5	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	55.6437078403499	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAACATCCAGTGTCTT	NA	False	NA	3	True	AGTAAA	-17	NA	95334754	95338393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_95335007_95335864_95336134_95337597_95337750_95337994
ES_00035710	chr3	+	2710	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	-11	0	-11	0	multi-exon	TRUE	canonical	0	0	junction_11	68.4937059524599	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTTAGGATCCTCTGA	NA	False	NA	-2	True	ATTAAA	-11	NA	95341687	95402878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ES_00035715	chr3	+	1465	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	-80	0	-79	0	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466908	95494903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ES_00035716	chr3	+	1720	15	NIC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	-79	185	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	83.0812240877466	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATAGTGTGTTATTA	NA	False	NA	4	True	ATTAAA	-15	NA	95466908	95495167	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95467035_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ES_00035718	chr3	+	1511	16	FSM	ENSMUSG00000028109.15	ENSMUST00000090797.11	1511	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	121.749177501214	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCACTGAATACAACCTGC	NA	False	NA	NA	False	AATACA	-22	NA	95466987	95494982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95467035_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
ES_00035719	chr3	+	3888	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	-1052	0	-1052	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95495192	95526553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ES_00035721	chr3	+	610	2	Genic_Genomic	ENSMUSG00000060438.6	novel	495	1	NA	NA	-39	59940	multi-exon	FALSE	non_canonical	0	0	junction_1	0	947	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGACTGTTTCTTCCA	67	False	NA	NA	False	NA	NA	NA	95529549	95590023	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_95530128_95589991
ES_00035724	chr3	+	1184	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	-54	0	-36	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	346	False	NA	10	True	AATAAA	-21	NA	95532267	95539413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
ES_00035725	chr3	+	952	2	FSM	ENSMUSG00000038619.13	ENSMUST00000197050.2	937	2	-15	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCTTTAATCCCAGTAC	400	False	NA	NA	False	ATTAAA	-30	NA	95532321	95534845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95532488_95534059
ES_00035726	chr3	+	3854	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	-9	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	58	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	400	False	NA	10	True	AATAAA	-21	NA	95532321	95539413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95532488_95534059_95534186_95535851
ES_00035729	chr3	+	3030	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	-86	-1343	0	500	multi-exon	FALSE	canonical	3	108	junction_6	85.2670641116617	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGATCTCACCTAATTTT	NA	False	NA	NA	False	AATAAA	-18	NA	95801280	95806100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
ES_00035732	chr3	+	878	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	694.522497835743	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTCTCATTCATCTTC	NA	False	NA	NA	False	NA	NA	NA	95836636	95852754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
ES_00035734	chr3	+	8010	12	NNC	ENSMUSG00000038495.15	novel	8043	12	NA	NA	-105	-4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	17.0565418486489	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTTGTATTTCATTTC	NA	False	NA	8	True	AATAAA	-18	NA	96011733	96068442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_96012132_96043784_96043936_96047727_96047917_96048932_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ES_00035735	chr3	+	8116	12	FSM	ENSMUSG00000038495.15	ENSMUST00000035519.12	8043	12	-76	3	-76	-3	multi-exon	FALSE	canonical	3	30	junction_1	14.2242953608394	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTGTATTTCATTTCC	NA	False	NA	9	True	AATAAA	-19	NA	96011762	96068443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96012132_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ES_00035737	chr3	+	8130	13	NIC	ENSMUSG00000038495.15	novel	8101	13	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	21.7976808144557	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTTGTATTTCATTTC	NA	False	NA	8	True	AATAAA	-18	NA	96011860	96068442	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_96012132_96037541_96037655_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ES_00035744	chr3	+	2798	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	-3	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96465272	96469173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ES_00035745	chr3	+	2827	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATACTGGAGAAGTTAC	NA	False	NA	45	True	AATAAA	-40	NA	96465272	96469199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ES_00035748	chr3	+	2611	6	FSM	ENSMUSG00000038374.11	ENSMUST00000196456.5	2604	6	-7	0	0	0	multi-exon	FALSE	canonical	3	2213	junction_2	872.428931202995	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACTATTCCTAATGT	8635	False	NA	NA	False	NA	NA	NA	96537248	96541107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
ES_00035749	chr3	+	2608	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	0	0	0	0	multi-exon	FALSE	canonical	3	2531	junction_2	745.762804114016	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACTATTCCTAATGT	8635	False	NA	NA	False	NA	NA	NA	96537248	96541107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
ES_00035751	chr3	+	2620	5	FSM	ENSMUSG00000038374.11	ENSMUST00000200647.2	2620	5	0	0	0	0	multi-exon	FALSE	canonical	3	2213	junction_1	949.111953354292	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACTATTCCTAATGT	8899	False	NA	NA	False	NA	NA	NA	96537512	96541107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
ES_00035752	chr3	+	560	2	FSM	ENSMUSG00000038374.11	ENSMUST00000199022.2	560	2	0	0	0	0	multi-exon	FALSE	canonical	3	4428	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATTACTTTACTGTTC	9923	False	NA	16	True	AATAAA	-20	NA	96538536	96539216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96538885_96539004
ES_00035753	chr3	+	2424	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCTCAGAAAGGGTCAAAA	NA	False	NA	3	True	AATAAA	-19	NA	96542745	96552682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ES_00035757	chr3	+	3946	13	FSM	ENSMUSG00000038354.14	ENSMUST00000048427.9	4052	13	106	0	-90	0	multi-exon	FALSE	canonical	3	6	junction_1	35.4200978730061	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	377	False	NA	16	True	AATAAA	-16	NA	96577552	96598348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96577766_96585448_96585580_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507
ES_00035758	chr3	+	3206	14	NNC	ENSMUSG00000038354.14	novel	4052	13	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_13	35.2504144085758	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	489	False	NA	16	True	AATAAA	-16	NA	96577664	96598348	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_96577766_96585448_96585580_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598240
ES_00035761	chr3	+	3262	13	ISM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	58	0	0	0	intron_retention	FALSE	canonical	3	88	junction_1	28.0132657067247	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2646	False	NA	5	True	AATAAA	-15	NA	96603757	96613278	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
ES_00035762	chr3	+	2931	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGTGTTTATTACTG	3287	False	NA	113	True	AAAAAG	-4	NA	96604398	96613386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ES_00035764	chr3	+	2811	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	-127	11	-86	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3194	False	NA	5	True	AATAAA	-15	NA	96604305	96613278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ES_00035786	chr3	+	7452	12	NIC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	19.1665169475527	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTGCCACATGCTGAA	231	False	NA	14	True	NA	NA	NA	101284377	101370375	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
ES_00035791	chr3	+	3694	19	NNC	ENSMUSG00000068823.11	novel	2584	14	NA	NA	-4442	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4739.08897486937	538	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102923299	102965502	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_102923325_102936416_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00035792	chr3	+	4344	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	-26	0	-26	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927715	102965502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00035793	chr3	+	3463	18	FSM	ENSMUSG00000068823.11	ENSMUST00000199240.5	3457	18	-6	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	5214.76529411098	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATCCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102927922	102965120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102927986_102936104_102936529_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00035794	chr3	+	3849	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAATGACAAGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	102927922	102965307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00035795	chr3	+	4191	20	FSM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	-6	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	5440.27575987562	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927922	102965502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102927986_102936104_102936529_102943890_102944038_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00035804	chr3	+	4474	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	-4	0	-4	0	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCCTACTGCCATAGGG	NA	False	NA	26	True	AATAAA	-28	NA	102965596	102975230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ES_00035806	chr3	+	629	3	FSM	ENSMUSG00000027852.15	ENSMUST00000197678.5	629	3	0	0	0	0	multi-exon	FALSE	canonical	3	771	junction_2	41	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGCTAGAGATTCAAGCA	NA	False	NA	NA	False	NA	NA	NA	102966058	102969849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102966349_102967516_102967696_102969689
ES_00035807	chr3	+	227	2	Genic_Genomic	ENSMUSG00000104671.2	novel	1319	1	NA	NA	-8	14339	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTTTTAAAGACAGGGTT	NA	False	NA	NA	False	NA	NA	NA	102978481	102994147	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_102978513_102993951
ES_00035810	chr3	+	4853	18	FSM	ENSMUSG00000007379.16	ENSMUST00000173206.8	4879	18	26	0	26	0	multi-exon	FALSE	canonical	2	18	junction_4	64.3554145131754	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCACATAAGATGTGTAG	NA	False	NA	NA	False	TTTAAA	-36	NA	103009945	103077085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ES_00035811	chr3	+	4986	19	NIC	ENSMUSG00000007379.16	novel	4879	18	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_1	23.362415738442	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	NA	False	NA	NA	False	GATAAA	-9	NA	103009945	103077047	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ES_00035814	chr3	+	4979	19	FSM	ENSMUSG00000007379.16	ENSMUST00000172288.3	4979	19	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	61.6686686361723	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCACAGATCTCTTGGAG	4717	False	NA	NA	False	GATAAA	-16	NA	103034871	103077054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103034967_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ES_00035815	chr3	+	3922	19	NNC	ENSMUSG00000007379.16	novel	3578	14	NA	NA	960	-869	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	65.8172976250671	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGAAATCTTTTCTTCA	5677	False	NA	NA	False	AGTAAA	-18	NA	103035831	103075111	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_103036813_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ES_00035817	chr3	+	3878	5	FSM	ENSMUSG00000005687.15	ENSMUST00000136937.8	3878	5	0	0	0	0	multi-exon	FALSE	canonical	3	3803	junction_1	91.1564589044572	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTTATGTGTGGCTAT	4977	False	NA	46	True	AATAAA	-14	NA	103079018	103086141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103084736_103085670
ES_00035819	chr3	+	2718	6	FSM	ENSMUSG00000005687.15	ENSMUST00000139489.8	2717	6	0	-1	0	1	multi-exon	FALSE	canonical	3	3472	junction_4	182.433111029769	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103084736_103085670
ES_00035820	chr3	+	1428	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	-23	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCATTTTAATCCC	5023	False	NA	NA	False	NA	NA	NA	103079064	103086482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ES_00035821	chr3	+	291	2	Antisense	novelGene_ENSMUSG00000054379.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAATACGATCCTGCTGGA	2745	False	NA	NA	False	NA	NA	NA	103105424	103106183	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_+_103105627_103106094
ES_00035823	chr3	+	359	3	Antisense	novelGene_ENSMUSG00000054379.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACGATCCTGCTGGAATG	2992	False	NA	NA	False	NA	NA	NA	103105671	103106186	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_+_103105738_103105776_103105978_103106094
ES_00035825	chr3	+	8712	19	FSM	ENSMUSG00000033014.13	ENSMUST00000106860.6	5025	19	-474	-3213	112	0	multi-exon	FALSE	canonical	3	12	junction_18	26.2196914974647	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTCTTTTTGAGACC	NA	False	NA	NA	False	ATTAAA	-32	NA	103186720	103266091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103187763_103217624_103217744_103218139_103218285_103218696_103218830_103228860_103228978_103231960_103232076_103233403_103233551_103234107_103234226_103236353_103236629_103237395_103237561_103238925_103239124_103244714_103244848_103246595_103246660_103248875_103249036_103251609_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103261012
ES_00035830	chr3	+	2715	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.1099525101254	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716943	103729341	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_103717100_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ES_00035837	chr3	+	4527	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	0	-101	0	101	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATTGGTATCATTCAT	NA	False	NA	NA	False	NA	NA	NA	104545983	104565879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
ES_00035839	chr3	+	1539	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	1302	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	26.8153263712203	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104689673	104693334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_104689846_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
ES_00035840	chr3	+	1202	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696203	104701775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ES_00035846	chr3	+	1100	8	FSM	ENSMUSG00000000561.15	ENSMUST00000127464.8	1095	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	910	junction_4	52.8737425671876	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTGTGAGTCTGAGTA	NA	False	NA	NA	False	AATATA	-16	NA	105866818	105873408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080
ES_00035847	chr3	+	4292	9	FSM	ENSMUSG00000000561.15	ENSMUST00000130994.8	4286	9	-6	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	323.092067954322	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAAGGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	105866823	105877353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_105867004_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
ES_00035851	chr3	+	3265	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	-21	27	-21	-27	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTAAATGAATATTACTA	NA	False	NA	NA	False	AATAGA	-42	NA	106455092	106483179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ES_00035852	chr3	+	2088	7	FSM	ENSMUSG00000027900.16	ENSMUST00000029507.13	1891	7	-62	-135	12	135	multi-exon	FALSE	canonical	1	3	junction_5	45.7298832517887	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCCCAGCACTTGGGA	NA	False	NA	NA	False	ATTAAA	-36	NA	106455125	106482296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106480288_106480382_106480890
ES_00035855	chr3	+	3180	4	FSM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	-77	0	-34	0	multi-exon	FALSE	canonical	2	11	junction_1	11.8415464455544	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGTATGGCTTTGTTT	NA	False	NA	28	True	AATAAA	-40	NA	106629174	106643890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720
ES_00035856	chr3	+	1810	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	-12	-129	-12	129	multi-exon	FALSE	canonical	3	21	junction_1	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAATCACTCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	106629196	106644022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_106629423_106641673_106641956_106642720
ES_00035861	chr3	+	237	1	FSM	ENSMUSG00000049231.7	ENSMUST00000138778.2	237	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGGCTAGGATGCCC	1011	False	NA	NA	False	NA	NA	NA	107886947	107887184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_107886900_107887200
ES_00035865	chr3	+	5445	2	FSM	ENSMUSG00000050947.10	ENSMUST00000106656.2	5482	2	6	31	6	-31	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATCACATAAAGAGATAGG	565	False	NA	NA	False	NA	NA	NA	108093679	108099571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108093995_108094441
ES_00035866	chr3	+	1058	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	181	0	181	0	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	11	True	AATAAA	-15	NA	108164422	108187290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
ES_00035868	chr3	+	6810	20	FSM	ENSMUSG00000068747.15	ENSMUST00000102632.7	6796	20	-14	0	-5	0	multi-exon	FALSE	canonical	3	21	junction_7	9.89893527949294	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACTAAGATGAGTAAGCT	4975	False	NA	23	True	AATAAA	-23	NA	108191392	108268827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241881_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108263546_108263654_108263892_108264005_108264544
ES_00035876	chr3	+	1674	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	-19	0	-18	0	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108478995	108489385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
ES_00035877	chr3	+	4187	15	FSM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	31	4	31	-4	multi-exon	FALSE	canonical	3	33	junction_5	8.19064922297845	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATCTGTCCTTTTCTCAC	NA	False	NA	-1	True	AATAAA	-14	NA	108498625	108553031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
ES_00035883	chr3	+	2069	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	126	junction_1	23.1716555264122	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6641	False	NA	6	True	AATAAA	-18	NA	108561273	108586156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ES_00035884	chr3	+	1961	11	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	56.7894356372732	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6641	False	NA	6	True	AATAAA	-18	NA	108561273	108586156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ES_00035885	chr3	+	2350	12	NIC	ENSMUSG00000027884.17	novel	2043	12	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	51.8028685507149	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6654	False	NA	6	True	AATAAA	-18	NA	108561286	108586156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_108561662_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ES_00035886	chr3	+	2053	12	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	54.9662556137704	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6659	False	NA	6	True	AATAAA	-18	NA	108561291	108586156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_108561368_108568670_108568812_108569247_108569352_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ES_00035887	chr3	+	3064	11	FSM	ENSMUSG00000027884.17	ENSMUST00000106613.2	3064	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	54.2318172293719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTTTCTTTTTTTCAG	6673	False	NA	NA	False	AATATA	-24	NA	108561305	108585328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108561662_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000
ES_00035890	chr3	+	2303	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	9	775	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGAATGGCACTCATTCCC	7731	False	NA	NA	False	TATAAA	-19	NA	115681804	115723756	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722410_115722484
ES_00035893	chr3	+	2839	5	FSM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	1	0	1	0	multi-exon	FALSE	canonical	3	16	junction_1	20.597329924046	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCATCCACTGTCAAA	53	False	NA	-34	True	AATACA	-45	NA	115801869	115822609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_115802187_115804270_115804346_115817655_115818084_115818973_115819045_115820661
ES_00035896	chr3	+	3146	10	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	68.4805099784864	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306797	116343630	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_116306841_116313885_116314010_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ES_00035898	chr3	+	2415	17	FSM	ENSMUSG00000027959.15	ENSMUST00000198311.5	2404	17	-26	15	0	0	multi-exon	FALSE	canonical	3	24	junction_15	13.4290671213603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAAAAAAAAAAATCTTA	NA	False	NA	NA	False	TATAAA	-35	NA	116388630	116422781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
ES_00035899	chr3	+	2460	16	FSM	ENSMUSG00000027959.15	ENSMUST00000197335.2	2458	16	-2	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.8238292431477	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGGGTCTATTATTATG	NA	False	NA	NA	False	NA	NA	NA	116388656	116422913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_116388828_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
ES_00035907	chr3	+	2037	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCCAGGTATTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	121085421	121156743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ES_00035910	chr3	+	2214	6	FSM	ENSMUSG00000053931.12	ENSMUST00000199188.5	2214	6	0	0	0	0	multi-exon	FALSE	canonical	3	4363	junction_2	396.918329130817	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	19	True	AATAAA	-19	NA	121220193	121251848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_121220478_121243597_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ES_00035919	chr3	+	1527	4	FSM	ENSMUSG00000039756.13	ENSMUST00000196338.2	564	4	-750	-213	-750	40	multi-exon	FALSE	canonical	3	1082	junction_3	150.603969255646	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCTGGTTATAGACTGT	NA	False	NA	63	True	AATAAA	-20	NA	122073475	122078960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_122074473_122075977_122076143_122078042_122078153_122078705
ES_00035925	chr3	+	4488	24	NNC	ENSMUSG00000039234.12	novel	3903	23	NA	NA	-2661	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	17.9836094246819	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACTGTGTTTTATGTCT	NA	False	NA	18	True	AATAAA	-18	NA	123058442	123159290	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_123058555_123060630_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
ES_00035926	chr3	+	5674	23	FSM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	-1771	0	-1771	0	multi-exon	FALSE	canonical	3	54	junction_9	11.2449253935915	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACTGTGTTTTATGTCT	NA	False	NA	18	True	AATAAA	-18	NA	123059332	123159290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
ES_00035931	chr3	+	312	1	FSM	ENSMUSG00000105233.2	ENSMUST00000197129.2	208	1	-10	-94	-10	94	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGGCTCTCTCTTCTGT	NA	False	NA	NA	False	AATAAA	-24	NA	126241381	126241693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_126241400_126241700
ES_00035935	chr3	+	4179	6	FSM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-237	-138	-93	138	multi-exon	FALSE	canonical	3	40	junction_5	13.6	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATCTCAAGCCATTTTTG	NA	False	NA	NA	False	ATTAAA	-7	NA	127347044	127358625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123
ES_00035943	chr3	+	5970	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	-19	0	0	0	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCTAGTTCTTTGTTG	NA	False	NA	17	True	AATAAA	-25	NA	129326015	129432144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
ES_00035950	chr3	+	3401	11	FSM	ENSMUSG00000027985.15	ENSMUST00000066849.13	3398	11	-3	0	-3	0	multi-exon	FALSE	canonical	3	14	junction_9	10.581115253129	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGTGGTGAACTGAACC	NA	False	NA	NA	False	AATAAA	-17	NA	130904116	131018005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_130998581_130998623_131016724
ES_00035951	chr3	+	3471	12	FSM	ENSMUSG00000027985.15	ENSMUST00000029611.14	3482	12	0	11	0	-11	multi-exon	TRUE	canonical	1	2	junction_6	15.8134789247173	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAATTGCGAGTTGGTGG	NA	False	NA	NA	False	AATAAA	-42	NA	130904119	131017994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130984671_130984756_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_130998581_130998623_131016724
ES_00035955	chr3	+	4139	26	NNC	ENSMUSG00000028030.13	novel	6578	26	NA	NA	2	765	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_1	13.9247118462107	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	19	True	ATTAAA	-23	NA	132389930	132545032	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_132390160_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349_132421492_132424380_132424442_132426281_132426344_132428066_132428129_132428428_132428578_132430536_132430676_132431421_132431522_132432417_132432468_132432811_132432942_132437926_132438026_132440107_132440171_132440478_132440606_132441834_132441886_132443265_132443350_132448762_132448849_132456947_132456985_132458268_132458431_132480181_132480358_132507264_132507441_132520950_132521111_132543721
ES_00035959	chr3	+	1410	12	FSM	ENSMUSG00000028013.17	ENSMUST00000122334.8	1368	12	-42	0	-30	0	multi-exon	TRUE	canonical	3	35	junction_11	149.418321201731	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTATATTCATAACTTC	NA	False	NA	NA	False	AATAAA	-14	NA	133015840	133083996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083610
ES_00035961	chr3	+	7908	46	FSM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	2	0	2	0	multi-exon	FALSE	canonical	0	0	junction_28	46.2867818371455	571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATAAGCCTTGTTGTGTG	NA	False	NA	101	True	TTTAAA	-43	NA	134918299	134979372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657_134938826_134939488_134939564_134939731_134939852_134940593_134940717_134940826_134940984_134941217_134941373_134943263_134943579_134943687_134943961_134944075_134944232_134945517_134945710_134946708_134946868_134947823_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
ES_00035963	chr3	+	1068	10	FSM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	-9	0	-9	0	multi-exon	FALSE	canonical	3	27	junction_1	15.3099660916801	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987012	135010187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ES_00035965	chr3	+	1213	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	-17	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053789	135063828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
ES_00035966	chr3	+	2029	12	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	35.3754362178519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATCACCTGCTATGTCTC	NA	False	NA	-2	True	ATTAAA	-10	NA	135053806	135103579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720_135099830_135103356
ES_00035967	chr3	+	1008	3	ISM	ENSMUSG00000050150.17	ENSMUST00000159658.8	588	4	5	13665	0	8	5prime_fragment	FALSE	canonical	3	17	junction_1	66	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCATTGTTTTTTCT	NA	False	NA	NA	False	AAGAAA	-2	NA	135053794	135064075	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_135053884_135060771_135060833_135063217
ES_00035968	chr3	+	1908	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	2	1072	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTTAAAGACCCTCAGAG	NA	False	NA	43	True	NA	NA	NA	135053791	135099916	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ES_00035969	chr3	+	1910	11	ISM	ENSMUSG00000050150.17	ENSMUST00000078568.12	2248	13	19	3709	-5	1035	5prime_fragment	FALSE	canonical	3	12	junction_9	35.3950561519543	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053813	135099879	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720
ES_00035975	chr3	+	3833	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	0	0	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135144325	135173959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ES_00035976	chr3	+	2515	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	0	0	0	0	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGATTGTTTGACAAGT	NA	False	NA	11	True	AATAAA	-12	NA	135144897	135172434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ES_00035980	chr3	+	273	2	FSM	ENSMUSG00000028164.16	ENSMUST00000134095.2	276	2	3	0	3	0	multi-exon	FALSE	canonical	3	106	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTGGGTACAACATGACA	NA	False	NA	NA	False	NA	NA	NA	135228698	135230320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135228929_135230277
ES_00035982	chr3	+	2717	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	61	-56	61	56	multi-exon	FALSE	canonical	3	67	junction_2	6.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACTGTATTTGGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	137329493	137334150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_137329645_137329892_137330035_137331726
ES_00035993	chr3	+	1480	4	FSM	ENSMUSG00000091512.6	ENSMUST00000200107.2	788	4	-80	-612	-80	2	multi-exon	FALSE	canonical	3	274	junction_1	22.8375908439475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTCTGTATAGGCCTCT	3837	False	NA	4	True	AATAAA	-24	NA	137630470	137634528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_137630932_137632569_137632704_137633107_137633172_137633707
ES_00035994	chr3	+	2690	1	FSM	ENSMUSG00000091512.6	ENSMUST00000200656.2	2726	1	-97	133	-97	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTCTGTATAGGCCTCT	5205	False	NA	4	True	AATAAA	-24	NA	137631838	137634528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_137631800_137634500
ES_00036002	chr3	+	4982	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	774	-4335	-86	38	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTAATTGACAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	138232959	138265495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ES_00036016	chr3	+	2312	15	NNC	ENSMUSG00000028256.17	novel	2239	15	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_3	24.2331363624105	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824311	144859650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ES_00036017	chr3	+	2463	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	-64	26	-63	0	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824285	144859650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ES_00036019	chr3	+	2371	16	NNC	ENSMUSG00000028256.17	novel	2425	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	18.7538440503985	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824381	144859650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ES_00036020	chr3	+	2284	16	NNC	ENSMUSG00000028256.17	novel	913	7	NA	NA	1071	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	28.4320632776136	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144827477	144859650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_144827557_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ES_00036022	chr3	+	2339	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	0	0	0	0	multi-exon	TRUE	canonical	3	657	junction_9	57.8243402122986	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAACATGTGTTATGTG	NA	False	NA	NA	False	AATATA	-45	NA	145281986	145310550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ES_00036030	chr3	+	1667	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	-23	0	5	0	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTTAGCATCTTGT	NA	False	NA	3	True	ATTAAA	-17	NA	145643773	145650582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
ES_00036033	chr3	+	1358	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	-49	-585	0	0	multi-exon	FALSE	canonical	3	74	junction_2	94.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTTAGCATCTTGT	NA	False	NA	3	True	ATTAAA	-17	NA	145643990	145650582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_145644084_145644652_145644852_145649516
ES_00036035	chr3	+	5600	7	FSM	ENSMUSG00000036863.13	ENSMUST00000039517.11	5495	7	-105	0	-105	0	multi-exon	FALSE	canonical	3	28	junction_1	22.9685775692696	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTATTGTAATTGATTT	NA	False	NA	5	True	ATTAAA	-16	NA	145693519	145727475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_145694925_145704220_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
ES_00036038	chr3	+	3410	14	FSM	ENSMUSG00000036825.13	ENSMUST00000039021.11	3410	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_10	37.3226774028969	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAGTGAAGCCTTGTGT	NA	False	NA	11	True	ATTAAA	-13	NA	146110418	146145888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_146110540_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
ES_00036039	chr3	+	2827	15	NIC	ENSMUSG00000036825.13	novel	2416	15	NA	NA	3	-336	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	66.5729613557446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAATTCAAAGCCCCT	NA	False	NA	NA	False	NA	NA	NA	146110421	146145201	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_146110540_146120450_146120555_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ES_00036045	chr3	+	2419	2	FSM	ENSMUSG00000068523.13	ENSMUST00000118280.2	2419	2	0	0	0	0	multi-exon	FALSE	canonical	3	3656	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCCTCCTTACTGATG	NA	False	NA	1	True	AATAAA	-14	NA	146205644	146211302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_146205776_146209014
ES_00036046	chr3	+	6514	20	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	3	0	intron_retention	FALSE	canonical	1	416	junction_13	332.523108563197	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	11	True	AATAAA	-16	NA	151916061	151942463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ES_00036052	chr3	+	2395	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	-21	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916134	151938408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ES_00036053	chr3	+	4867	20	FSM	ENSMUSG00000028034.16	ENSMUST00000199876.5	4846	20	-21	0	0	0	multi-exon	FALSE	canonical	1	87	junction_19	391.578629032129	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	151916134	151941405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151940208_151941104
ES_00036054	chr3	+	4548	22	FSM	ENSMUSG00000028034.16	ENSMUST00000200452.5	4525	22	-23	0	0	0	multi-exon	FALSE	canonical	1	46	junction_21	437.411231033239	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	11	True	AATAAA	-16	NA	151916134	151942463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031_151940208_151941104_151941242_151942243
ES_00036055	chr3	+	6411	20	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	4	0	intron_retention	FALSE	canonical	1	416	junction_13	305.324648979145	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	11	True	AATAAA	-16	NA	151916161	151942463	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ES_00036060	chr3	+	3887	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	-1	0	-1	0	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGAATGTTGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	152052113	152098970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ES_00036065	chr3	+	4549	15	NIC	ENSMUSG00000039068.17	novel	4197	14	NA	NA	259	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	95.2439402968258	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAAGCTTGTTGTGGATT	NA	False	NA	18	True	AATAAA	-27	NA	152102027	152165112	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152265_152152327_152152435_152152575_152154415_152154564_152154652_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ES_00036066	chr3	+	4197	14	FSM	ENSMUSG00000039068.17	ENSMUST00000089982.11	4197	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	76.161382688458	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTTGTTGTGGATTCC	NA	False	NA	20	True	AATAAA	-29	NA	152102320	152165114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154652_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ES_00036071	chr3	+	2520	9	FSM	ENSMUSG00000028199.19	ENSMUST00000029850.15	2507	9	-13	0	-13	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	False	NA	18	True	AGTAAA	-18	NA	154302334	154328819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ES_00036072	chr3	+	2966	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	-269	40	-41	0	multi-exon	TRUE	canonical	3	77	junction_9	297.644569915193	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157239755	157253973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
ES_00036073	chr3	+	2919	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	0	5	0	-5	multi-exon	FALSE	canonical	3	697	junction_8	81.8057017542553	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATAGCTTTTTTTTTTGTC	NA	False	NA	32	True	AATAAA	-40	NA	157239796	157254042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ES_00036076	chr3	+	4637	1	FSM	ENSMUSG00000039988.15	ENSMUST00000199757.2	4586	1	2	-53	2	53	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGGATCCTGGGGCCAG	NA	False	NA	NA	False	AATGAA	-45	NA	157704149	157708786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_157704100_157708800
ES_00036078	chr3	+	2478	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	-28	0	10	0	multi-exon	TRUE	canonical	3	70	junction_1	215.046296694973	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742308	157772726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ES_00036081	chr3	+	381	3	FSM	ENSMUSG00000063052.10	ENSMUST00000200540.2	381	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	347.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCAGCTAAAGGTACTGT	NA	False	NA	NA	False	AATAAA	-30	NA	157742386	157757463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_157742514_157754037_157754162_157757333
ES_00036085	chr3	+	1978	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	-7	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTGCTTCTTTATTTAT	NA	False	NA	NA	False	AAAACA	-43	NA	159201087	159235096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ES_00036087	chr3	-	1674	6	NNC	ENSMUSG00000040374.14	novel	1777	6	NA	NA	0	17063	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.0165158093053	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGGAAAATGAGGGG	NA	False	NA	NA	False	NA	NA	NA	5641205	5608184	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_5608208_5625563_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
ES_00036088	chr3	-	1876	4	FSM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	-287	-2	-193	1	multi-exon	FALSE	canonical	3	15	junction_1	22.2161102706022	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGCATTTATTTTTGG	NA	False	NA	2	True	AATAAA	-22	NA	5641492	5625557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_5626821_5628224_5628333_5628679_5628790_5641097
ES_00036089	chr3	-	1751	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	0	-2	0	1	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGCATTTATTTTTGG	NA	False	NA	2	True	AATAAA	-22	NA	5641299	5625557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
ES_00036090	chr3	-	2615	1	FSM	ENSMUSG00000103733.2	ENSMUST00000194870.2	2930	1	282	33	282	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGACATCAAGGCCCAGC	NA	False	NA	NA	False	AATAAA	-18	NA	6232602	6229987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_6230000_6232600
ES_00036091	chr3	-	2214	5	FSM	ENSMUSG00000040289.9	ENSMUST00000042412.5	2423	5	209	0	-63	0	multi-exon	FALSE	canonical	3	9	junction_1	1.11803398874989	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTGTGTCTGTCTTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	8732107	8728418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8730125_8731004_8731087_8731331_8731416_8731561_8731638_8731841
ES_00036092	chr3	-	714	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	67	2	67	-2	multi-exon	FALSE	canonical	3	890	junction_1	0.5	655	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCCTGCCGTGGTTCTT	NA	False	NA	-3	True	NA	NA	NA	8988911	8867207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8867475_8965045_8965228_8988646
ES_00036093	chr3	-	6316	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCACTCTCTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	9069783	8990653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ES_00036094	chr3	-	2467	6	FSM	ENSMUSG00000027506.16	ENSMUST00000091354.12	2193	6	-110	-164	-108	164	multi-exon	FALSE	canonical	0	0	junction_1	1287.01132862147	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	-3	True	AATATA	-17	NA	9029216	8994493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9028906
ES_00036095	chr3	-	2809	7	FSM	ENSMUSG00000027506.16	ENSMUST00000134788.8	673	7	-431	-1705	-186	164	multi-exon	FALSE	canonical	0	0	junction_1	1284.12148957955	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	-3	True	AATATA	-17	NA	9069969	8994493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9068347_9068495_9069464
ES_00036096	chr3	-	13835	9	FSM	ENSMUSG00000040209.13	ENSMUST00000041124.13	13834	9	0	-1	0	1	multi-exon	FALSE	canonical	3	267	junction_2	34.7697785440172	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCTATCTGGGAGCCA	NA	False	NA	-8	True	AATAAA	-16	NA	9675145	9492078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_9503959_9504844_9504943_9511019_9511125_9512334_9512603_9517323_9517425_9535951_9536179_9539558_9539663_9630123_9630360_9674329
ES_00036097	chr3	-	4167	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	11	7	11	-7	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGATAGCATGTTTTT	NA	False	NA	NA	False	AGTAAA	-6	NA	10396488	10377022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ES_00036098	chr3	-	1817	8	FSM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	3	-210	0	210	multi-exon	FALSE	canonical	3	339	junction_1	173.164190104923	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGCTTTTATCAGAC	NA	False	NA	NA	False	CATAAA	-9	NA	10416374	10404802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
ES_00036099	chr3	-	2016	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	203	combination_of_known_junctions	FALSE	canonical	3	120	junction_6	235.712813848219	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATAATTTCTTGCTTTT	NA	False	NA	NA	False	CATAAA	-2	NA	10416373	10404809	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
ES_00036104	chr3	-	2515	7	FSM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	0	-3	0	3	multi-exon	FALSE	canonical	3	23	junction_1	44.7837396086273	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTTATCAGTGTCTGA	NA	False	NA	5	True	AATAAA	-30	NA	10505162	10482873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10484284_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ES_00036105	chr3	-	2617	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	-329	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGTGTTATCAGTGTC	NA	False	NA	2	True	AATAAA	-27	NA	10505147	10482876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ES_00036106	chr3	-	445	1	FSM	ENSMUSG00000104514.2	ENSMUST00000192809.2	637	1	-33	225	-33	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGACAAGCAGCCCTAT	NA	False	NA	NA	False	AAGAAA	-29	NA	13735238	13734793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_13734800_13735200
ES_00036107	chr3	-	435	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAAATCTTGTTAAT	NA	False	NA	0	True	AATAAA	-23	NA	14676345	14671343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
ES_00036108	chr3	-	559	4	FSM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	2488.45909483493	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676281	14671348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676076
ES_00036109	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_2	211	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676321	14671348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_14672354_14674600_14674718_14676269
ES_00036110	chr3	-	278	3	FSM	ENSMUSG00000078784.9	ENSMUST00000185423.2	278	3	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	2412	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTTATTTCTTTAAAT	NA	False	NA	-9	True	AATAAA	-14	NA	14676314	14671352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_14671469_14674600_14674718_14676269
ES_00036111	chr3	-	508	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTGAAGTACAATTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	14676303	14674243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_14674718_14676269
ES_00036112	chr3	-	2131	6	FSM	ENSMUSG00000039519.7	ENSMUST00000035625.7	2166	6	37	-2	37	2	multi-exon	FALSE	canonical	2	3	junction_2	6.79411510058521	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTAAATGTTCCAACTC	NA	False	NA	NA	False	ATTAAA	-13	NA	18297465	18126111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_18126918_18133468_18133645_18150686_18150894_18151367_18151959_18157864_18158002_18297251
ES_00036113	chr3	-	3666	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	0	7	0	-7	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCAACCTGTATAATTAC	NA	False	NA	NA	False	AATAAA	-16	NA	19217229	19185572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ES_00036114	chr3	-	6621	13	FSM	ENSMUSG00000069094.13	ENSMUST00000099195.10	6298	13	-323	0	-323	0	multi-exon	FALSE	canonical	0	0	junction_2	44.9311201235353	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAGTCTACCTGTCAG	NA	False	NA	NA	False	TATAAA	-23	NA	19365809	19277271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_19282006_19283851_19283933_19284419_19284517_19285120_19285266_19287263_19287356_19287839_19287972_19290076_19290178_19290607_19290704_19295309_19295374_19297213_19297366_19310941_19311026_19314395_19314457_19365027
ES_00036117	chr3	-	3981	17	FSM	ENSMUSG00000027615.15	ENSMUST00000012580.13	4016	17	35	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	9.33324032691755	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGCATGTGTCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	20089444	20050108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ES_00036118	chr3	-	3388	17	FSM	ENSMUSG00000027615.15	ENSMUST00000108321.2	3385	17	0	-3	0	0	multi-exon	FALSE	canonical	2	2	junction_16	13.1101106021269	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCTAATAATTTCCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	20089466	20050327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084574_20089212
ES_00036119	chr3	-	3393	10	FSM	ENSMUSG00000027615.15	ENSMUST00000137408.8	3395	10	0	2	0	-2	multi-exon	FALSE	canonical	3	37	junction_6	8.31330927555995	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAGTGGCTACTGAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	20089458	20066688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ES_00036120	chr3	-	1737	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	-36	-3	-36	0	multi-exon	FALSE	canonical	3	45	junction_2	8.93805845186128	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGTTGTTTAAGTACTT	NA	False	NA	-2	True	AATAAA	-15	NA	20209296	20176247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
ES_00036121	chr3	-	1855	1	FSM	ENSMUSG00000106019.2	ENSMUST00000199072.2	1731	1	-125	1	-125	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGGTTTTGTTGTTGTT	NA	False	NA	NA	False	AGTAAA	-15	NA	22130431	22128576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_22128600_22130400
ES_00036122	chr3	-	742	1	FSM	ENSMUSG00000103293.2	ENSMUST00000195073.2	622	1	-137	17	-137	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGATGATGATGATGAAT	NA	False	NA	NA	False	NA	NA	NA	22135416	22134674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_22134700_22135400
ES_00036124	chr3	-	4086	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1827	False	NA	NA	False	AATAAA	-20	NA	27208010	27151370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
ES_00036125	chr3	-	4024	24	FSM	ENSMUSG00000027699.20	ENSMUST00000108298.9	4024	24	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_21	160.816383688852	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1810	False	NA	NA	False	AATAAA	-20	NA	27208027	27151370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27203141_27203222_27204177_27204330_27207851
ES_00036126	chr3	-	3985	24	FSM	ENSMUSG00000027699.20	ENSMUST00000176242.9	3985	24	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_21	183.743194259469	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1834	False	NA	NA	False	AATAAA	-19	NA	27208003	27151371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27203141_27203222_27204177_27204330_27207865
ES_00036127	chr3	-	4055	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	581	junction_24	64.5165784034529	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	1869	False	NA	NA	False	AATAAA	-17	NA	27207968	27151373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ES_00036128	chr3	-	3936	24	FSM	ENSMUSG00000027699.20	ENSMUST00000184113.8	3935	24	0	-1	0	1	multi-exon	FALSE	canonical	1	2	junction_21	217.581751361459	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	1838	False	NA	NA	False	AATAAA	-17	NA	27207999	27151373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201032_27203141_27203222_27204177_27204330_27207771
ES_00036130	chr3	-	2189	19	FSM	ENSMUSG00000027699.20	ENSMUST00000108296.6	2228	19	0	39	0	-39	multi-exon	FALSE	canonical	3	28	junction_16	174.391260470228	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCCTAATTATTTAAAAT	1876	False	NA	NA	False	NA	NA	NA	27207961	27176065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27203141_27203222_27204177_27204330_27207851
ES_00036131	chr3	-	691	6	FSM	ENSMUSG00000027699.20	ENSMUST00000177055.8	675	6	0	-16	0	0	multi-exon	FALSE	canonical	3	29	junction_4	268.824850041807	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGGAGCTTGTAAGTAT	1878	False	NA	NA	False	NA	NA	NA	27207959	27200116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27200195_27200985_27201169_27202943_27203037_27203141_27203219_27204177_27204330_27207851
ES_00036132	chr3	-	712	6	FSM	ENSMUSG00000027699.20	ENSMUST00000176535.8	712	6	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_5	75.1675461884981	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGGAGCTTGTAAGTAT	1860	False	NA	NA	False	NA	NA	NA	27207977	27200116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ES_00036133	chr3	-	589	6	FSM	ENSMUSG00000027699.20	ENSMUST00000175857.2	589	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	288.903028713788	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCGCTGTATTGTACGAG	1906	False	NA	NA	False	NA	NA	NA	27207931	27200176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_27200195_27200985_27201169_27202943_27203037_27203141_27203219_27204177_27204330_27207865
ES_00036136	chr3	-	7051	24	NNC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	53456	-4	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_8	23.0471695156761	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTAAGTAGGGTTCT	205	False	NA	-29	True	AATAAA	-14	NA	27711091	27470314	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27710592
ES_00036137	chr3	-	7206	26	NNC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	53531	1	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_25	16.7382675328123	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGTAGGGTTCTTCAGC	280	False	NA	-24	True	AATAAA	-19	NA	27711016	27470309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27514093_27514200_27515824_27515944_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27710592
ES_00036140	chr3	-	648	1	FSM	ENSMUSG00000070522.5	ENSMUST00000094335.5	648	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTACCTCCCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	28819509	28818861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_28818900_28819500
ES_00036142	chr3	-	4497	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	20	-2931	0	2931	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACAAATTCCAATAAACA	NA	False	NA	-32	True	AATAAA	-22	NA	30753959	30730275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
ES_00036145	chr3	-	870	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	-20	-145	0	-30	multi-exon	FALSE	canonical	3	18	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCTGTTCCTTCTCA	NA	False	NA	NA	False	AATGAA	-41	NA	30753979	30752125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_30752864_30753847
ES_00036148	chr3	-	7775	7	NNC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	46.8309607939971	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCGGTTCTGAGTCGGG	NA	False	NA	0	True	AATAAA	-26	NA	32419827	32388940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_32394651_32394672_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
ES_00036149	chr3	-	7797	6	FSM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	21.7568380055559	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCGGTTCTGAGTCGGG	NA	False	NA	0	True	AATAAA	-26	NA	32419827	32388940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
ES_00036150	chr3	-	2311	6	NNC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	-32	-5430	intron_retention	FALSE	canonical	3	11	junction_5	45.5692879031481	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGACTGATGGAGTGTTA	NA	False	NA	-27	True	AATAAA	-20	NA	32419859	32394374	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419736
ES_00036152	chr3	-	5997	10	FSM	ENSMUSG00000027669.15	ENSMUST00000155737.8	5997	10	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_8	7.61253028131584	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTGTACCTTGTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	32670734	32634480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_32639376_32641709_32641927_32643857_32644060_32644145_32644213_32645259_32645423_32647306_32647371_32650425_32650533_32652274_32652314_32656193_32656290_32670587
ES_00036153	chr3	-	3362	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	0	2	0	-2	multi-exon	FALSE	canonical	3	685	junction_5	35.1931180141168	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTATTCTCAAAAGTTC	NA	False	NA	NA	False	TATAAA	-12	NA	32791296	32779547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ES_00036154	chr3	-	1505	1	FSM	ENSMUSG00000037531.9	ENSMUST00000192021.2	1505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGATCTGATGCCTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	32791754	32790249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_32790200_32791800
ES_00036156	chr3	-	1505	3	FSM	ENSMUSG00000027676.12	ENSMUST00000197230.2	1557	3	52	0	43	0	multi-exon	FALSE	canonical	2	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTCTCTCCTGTTCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	33898407	33892142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_33893374_33895217_33895338_33898253
ES_00036157	chr3	-	779	2	Genic_Genomic	ENSMUSG00000044434.6	novel	447	1	NA	NA	-47	24098	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34059659	34035067	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_34035093_34058905
ES_00036158	chr3	-	447	1	FSM	ENSMUSG00000044434.6	ENSMUST00000060997.6	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCTGCAAGAACCCCTTC	NA	False	NA	NA	False	NA	NA	NA	34059612	34059165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34059200_34059600
ES_00036159	chr3	-	659	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCATTGCTGACTTA	NA	False	NA	71	True	TATAAA	-1	NA	34135470	34131427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ES_00036160	chr3	-	551	5	FSM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	1441.31155549381	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGATTTCAAGAATT	NA	False	NA	26	True	NA	NA	NA	34135459	34131472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34135334
ES_00036161	chr3	-	1695	5	FSM	ENSMUSG00000027679.14	ENSMUST00000117223.4	1695	5	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_2	271.507366382572	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATTAGTCTACTTATGA	NA	False	NA	-84	True	AATAAA	-20	NA	34135411	34131582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ES_00036162	chr3	-	505	1	FSM	ENSMUSG00000105284.2	ENSMUST00000196779.2	631	1	97	29	97	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGTGACAATTAAAATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	34718341	34717836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34717800_34718300
ES_00036163	chr3	-	676	4	FSM	ENSMUSG00000105153.5	ENSMUST00000198364.2	675	4	0	-1	0	1	multi-exon	FALSE	canonical	3	4	junction_1	0.471404520791032	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTGTTAAGCTCCTTTAA	NA	False	NA	NA	False	ATTAAA	-15	NA	34770811	34763770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34764079_34764315_34764508_34768115_34768187_34770706
ES_00036164	chr3	-	964	1	FSM	ENSMUSG00000106496.2	ENSMUST00000199038.2	919	1	-23	-22	-23	22	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTTTCTTATGACTGTT	NA	False	NA	NA	False	AAGAAA	-26	NA	35591972	35591008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_35591000_35592000
ES_00036167	chr3	-	4969	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	13	-2	13	2	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTTATTGCTTCCATTT	NA	False	NA	2	True	TATAAA	-19	NA	35987608	35946251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
ES_00036168	chr3	-	2492	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	0	-308	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTACAGACCTATATTG	NA	False	NA	NA	False	ATTAAA	-25	NA	35986973	35947962	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
ES_00036169	chr3	-	264	1	FSM	ENSMUSG00000105095.2	ENSMUST00000199608.2	822	1	142	416	142	-416	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	36010264	36010000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_36010000_36010300
ES_00036171	chr3	-	2088	11	FSM	ENSMUSG00000027709.10	ENSMUST00000198515.5	2114	11	0	26	0	-26	multi-exon	FALSE	canonical	3	210	junction_2	16.8059513268366	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAACTAATAAAACAGAGAC	3493	False	NA	NA	False	NA	NA	NA	36050028	36027554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929
ES_00036174	chr3	-	2612	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	70	5	-18	-5	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATACTTGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	36667556	36627295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
ES_00036176	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.41869858279434	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37366595	37362770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
ES_00036177	chr3	-	754	3	NIC	ENSMUSG00000045031.19	novel	1808	4	NA	NA	13	-4	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	10	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTAAGTATCTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	37366556	37362774	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_37363331_37364441_37364589_37366505
ES_00036179	chr3	-	1081	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	7	67	1	5	multi-exon	FALSE	canonical	1	4	junction_4	11.8743420870379	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTAATCCTCACTGGGTC	NA	False	NA	-5	True	AATAAA	-24	NA	37473738	37459125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
ES_00036180	chr3	-	1199	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	0	65	0	7	multi-exon	FALSE	canonical	2	6	junction_4	11.0792599030802	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCCTCACTGGGTCAC	NA	False	NA	-3	True	AATAAA	-26	NA	37474335	37459123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
ES_00036182	chr3	-	468	1	FSM	ENSMUSG00000105359.2	ENSMUST00000071237.7	480	1	42	-30	42	30	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAGGAAAAAGAAAATACTG	NA	False	NA	NA	False	AATAAA	-10	NA	38162029	38161561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_38161600_38162000
ES_00036183	chr3	-	8546	5	NIC	ENSMUSG00000044864.17	novel	4945	4	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	7.49583217528247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTCCCTTCTCTGGA	NA	False	NA	NA	False	AATAAA	-22	NA	38539049	38503407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_38506655_38508189_38511735_38517048_38517279_38536839_38538134_38538819
ES_00036184	chr3	-	7031	4	FSM	ENSMUSG00000044864.17	ENSMUST00000156038.2	7031	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	1.63299316185545	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTGGTTTAATTTCGT	NA	False	NA	NA	False	AATAAA	-20	NA	38537240	38503799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_38506655_38508189_38511735_38517048_38517279_38536839
ES_00036186	chr3	-	3058	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	91	2	8	-2	multi-exon	FALSE	canonical	3	17	junction_5	6.38308715692435	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATATGAAGAGGACCTGA	NA	False	NA	14	True	AATAAA	-32	NA	40801229	40772539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
ES_00036187	chr3	-	3007	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	0	0	0	0	multi-exon	FALSE	canonical	3	569	junction_2	17	993	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTACATTTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	41037481	41020760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_41023160_41024714_41024871_41037029
ES_00036189	chr3	-	1145	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	11	0	multi-exon	FALSE	canonical	3	17	junction_1	28.9405520948643	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447614	41432011	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447574
ES_00036190	chr3	-	609	2	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	0	-1431	at_least_one_novel_splicesite	FALSE	canonical	3	175	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAACTGTGCCGTACAC	NA	False	NA	NA	False	TTTAAA	-12	NA	41447625	41439889	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41440396_41447522
ES_00036191	chr3	-	2161	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	41447625	41442113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_41444172_41447522
ES_00036193	chr3	-	1243	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	15	14450	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	37.1374137494791	277	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATATTATACTGTTCTA	NA	False	NA	NA	False	AAAAAG	-2	NA	41482864	41461231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477364_41477680_41482833
ES_00036194	chr3	-	1244	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	14450	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	46.618129520606	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATATTATACTGTTCTA	NA	False	NA	NA	False	AAAAAG	-2	NA	41482879	41461231	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
ES_00036195	chr3	-	643	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	18	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_41476891_41477364_41477680_41482833
ES_00036196	chr3	-	512	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTTGATGTCAATGGAC	NA	False	NA	-15	True	AATAAA	-14	NA	41482906	41476651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41476891_41477364_41477565_41482833
ES_00036198	chr3	-	3027	21	FSM	ENSMUSG00000059834.13	ENSMUST00000026866.15	3005	21	-19	-3	-19	3	multi-exon	FALSE	canonical	3	23	junction_17	7.74919350642375	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCATGTATTTGAGTG	NA	False	NA	NA	False	AATAAA	-21	NA	41696968	41581151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638_41611832_41616006_41616153_41618386_41618462_41621545_41621618_41625819_41625919_41629762_41629941_41636130_41636223_41636716_41636808_41657820_41657892_41663903_41663970_41665517_41665641_41672163_41672300_41681527_41681584_41684725_41684799_41685295_41685355_41688602_41688671_41696429
ES_00036204	chr3	-	344	1	ISM	ENSMUSG00000027737.11	ENSMUST00000029297.6	9223	12	73005	5325	193	-414	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAAGGTCAATGACCTCC	NA	False	NA	NA	False	NA	NA	NA	50325055	50324711	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_50324700_50325100
ES_00036205	chr3	-	5923	10	FSM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	0	-4	0	4	multi-exon	FALSE	canonical	3	55	junction_9	82.9231385897823	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGATTTCTTTAAATTC	NA	False	NA	NA	False	AATAAA	-23	NA	51248084	51160136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ES_00036206	chr3	-	3353	10	FSM	ENSMUSG00000037174.19	ENSMUST00000062009.14	3353	10	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_9	81.5267887503894	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTGGTTTTGGTCTCT	NA	False	NA	-7	True	AATATA	-13	NA	51248065	51162651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ES_00036207	chr3	-	3475	11	NIC	ENSMUSG00000037174.19	novel	3353	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	93.351004279547	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTGGTTTTGGTCTCT	NA	False	NA	-7	True	AATATA	-13	NA	51248084	51162651	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51207203_51207307_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ES_00036208	chr3	-	2514	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184935	51163085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
ES_00036209	chr3	-	2611	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	57.3626378596925	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184996	51163085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51184625
ES_00036210	chr3	-	1232	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303969	51295832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
ES_00036211	chr3	-	1236	5	FSM	ENSMUSG00000037161.15	ENSMUST00000141156.3	1246	5	10	0	10	0	multi-exon	FALSE	canonical	1	2	junction_4	85.5847533150619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51304149	51295832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847_51303916_51304091
ES_00036215	chr3	-	7411	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTGTCAGTTTTGTTT	NA	False	NA	0	True	ATTAAA	-15	NA	51468300	51422739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
ES_00036218	chr3	-	622	1	FSM	ENSMUSG00000105397.2	ENSMUST00000197550.2	467	1	-23	-132	-23	132	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCATTGCATTAGTCTT	NA	False	NA	NA	False	AATAAA	-29	NA	53309641	53309019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_53309000_53309600
ES_00036219	chr3	-	5049	7	FSM	ENSMUSG00000042997.14	ENSMUST00000056749.14	5047	7	0	-2	0	2	multi-exon	FALSE	canonical	3	23	junction_4	5.77350269189626	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGCTTTATTCATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	53370753	53356001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369052_53369201_53369732_53369886_53370480
ES_00036220	chr3	-	5079	6	FSM	ENSMUSG00000042997.14	ENSMUST00000130348.2	4885	6	-187	-7	-178	2	multi-exon	FALSE	canonical	3	21	junction_4	7.03135833249878	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGCTTTATTCATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	53370931	53356001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369732_53369886_53370480
ES_00036224	chr3	-	457	1	FSM	ENSMUSG00000105879.2	ENSMUST00000198872.2	457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	NA	False	NA	NA	False	AAGAAA	-29	NA	53600299	53599842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_53599800_53600300
ES_00036225	chr3	-	4885	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	5	0	-5	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACAGTTTACAGTTGAT	NA	False	NA	NA	False	AATAAA	-12	NA	53771251	53760801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ES_00036226	chr3	-	246	5	FSM	ENSMUSG00000027746.14	ENSMUST00000122330.2	637	5	4	387	0	-387	multi-exon	FALSE	canonical	3	324	junction_2	16.5435032565657	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAACTAGATAGAACTT	NA	False	NA	NA	False	NA	NA	NA	53771183	53766618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ES_00036227	chr3	-	2320	8	FSM	ENSMUSG00000027752.16	ENSMUST00000150923.8	2316	8	0	-4	0	0	multi-exon	FALSE	canonical	3	1645	junction_7	192.173603487969	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642458	54636098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ES_00036228	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642814	54636098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ES_00036232	chr3	-	2163	3	FSM	ENSMUSG00000036615.8	ENSMUST00000044373.6	2162	3	0	-1	0	1	multi-exon	FALSE	canonical	3	271	junction_1	17.5	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCTGCTGTACTTATTTC	NA	False	NA	1	True	ATTAAA	-22	NA	54715212	54710534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54711997_54712780_54712889_54714619
ES_00036233	chr3	-	867	1	FSM	ENSMUSG00000069011.6	ENSMUST00000052888.9	867	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGAAGTTGAAGACTTT	NA	False	NA	NA	False	NA	NA	NA	54718671	54717804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54717800_54718700
ES_00036234	chr3	-	1554	9	FSM	ENSMUSG00000027793.7	ENSMUST00000198320.5	1564	9	14	-4	9	2	multi-exon	FALSE	canonical	1	1	junction_8	2.95803989154981	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGGGGCTCTTTAC	NA	False	NA	NA	False	AATAAA	-17	NA	54962449	54952893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961943_54962369
ES_00036239	chr3	-	4702	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	0	-5	0	5	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTTTCTGTCGTCAT	NA	False	NA	-1	True	AATAAA	-22	NA	57483249	57363064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
ES_00036240	chr3	-	4669	7	FSM	ENSMUSG00000027803.15	ENSMUST00000120977.2	4533	7	-3	-133	-3	0	multi-exon	FALSE	canonical	2	7	junction_6	83.079112229783	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGCCTTTGTTTCTGTC	NA	False	NA	-6	True	AATAAA	-17	NA	57483334	57363069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483134
ES_00036243	chr3	-	563	2	Genic_Genomic	ENSMUSG00000104623.2	novel	477	1	NA	NA	0	51743	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGATTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	57625710	57573490	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_57573528_57625184
ES_00036244	chr3	-	561	2	Genic_Genomic	ENSMUSG00000104623.2	novel	477	1	NA	NA	0	51742	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGATTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	57625710	57573491	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_57573527_57625184
ES_00036245	chr3	-	477	1	FSM	ENSMUSG00000104623.2	ENSMUST00000197077.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	57625710	57625233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57625200_57625700
ES_00036246	chr3	-	2058	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	280	4	-250	-4	multi-exon	FALSE	canonical	3	22	junction_1	7	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTGGACTCCTGTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	57755220	57749319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57750736_57752594_57752788_57754771
ES_00036250	chr3	-	2511	2	FSM	ENSMUSG00000036432.9	ENSMUST00000070368.8	2511	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTGCTTGAATCGTAT	NA	False	NA	0	True	AATAAA	-30	NA	58599821	58582358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_58583865_58598816
ES_00036253	chr3	-	374	1	FSM	ENSMUSG00000098208.2	ENSMUST00000182720.2	1003	1	825	-196	825	196	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAGAAAGAAACT	NA	False	NA	NA	False	AATAAA	-30	NA	61369457	61369083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_61369100_61369500
ES_00036254	chr3	-	5643	26	NNC	ENSMUSG00000027770.6	novel	5620	25	NA	NA	0	32381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.946532460101	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTGCAGATGTAGTCAA	NA	False	NA	NA	False	NA	NA	NA	62414425	62343052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_62343078_62375435_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
ES_00036255	chr3	-	3577	26	NNC	ENSMUSG00000027770.6	novel	5620	25	NA	NA	0	32381	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.946532460101	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTGCAGATGTAGTCAA	NA	False	NA	NA	False	NA	NA	NA	62414425	62343052	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_62343079_62377502_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
ES_00036257	chr3	-	6052	25	FSM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	0	-432	0	432	multi-exon	FALSE	canonical	3	420	junction_17	54.5870704827516	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGTTTAACATATAGTT	NA	False	NA	NA	False	NA	NA	NA	62414425	62375001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
ES_00036258	chr3	-	845	3	FSM	ENSMUSG00000027770.6	ENSMUST00000160858.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_1	97	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTCTAGACTTGATCAAA	NA	False	NA	NA	False	NA	NA	NA	62380008	62378065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_62378169_62378742_62378896_62379419
ES_00036259	chr3	-	518	2	Genic_Genomic	ENSMUSG00000063001.11	novel	427	1	NA	NA	-11	2625	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGGTAAATGATCA	NA	False	NA	NA	False	NA	NA	NA	62831665	62828602	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_62828641_62831185
ES_00036263	chr3	-	1571	5	FSM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	69	0	-12	0	multi-exon	FALSE	canonical	3	41	junction_2	6.68487097856047	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTGAGATCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	63836824	63822104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684_63834745_63836677
ES_00036264	chr3	-	3151	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	0	-1	0	1	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAAGCTGTTTTTTTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	63872189	63849749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
ES_00036266	chr3	-	2229	12	FSM	ENSMUSG00000027829.16	ENSMUST00000129002.8	2229	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	57.4382888393569	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTCAAATATCTTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	65865583	65853571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862550_65862698_65864273_65864384_65864921_65864997_65865228
ES_00036269	chr3	-	1981	12	FSM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	51.1618724254952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTTTTACAAGGAAATA	NA	False	NA	NA	False	TTTAAA	-44	NA	65865453	65853615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862624_65862698_65864273_65864384_65864921_65864997_65865228
ES_00036270	chr3	-	3222	4	FSM	ENSMUSG00000027829.16	ENSMUST00000149160.8	3222	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	34.7658836600865	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAAAAAGAATGAAGT	NA	False	NA	NA	False	AATATA	-4	NA	65865602	65856312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_65858976_65864273_65864384_65864921_65864997_65865228
ES_00036274	chr3	-	576	1	FSM	ENSMUSG00000103206.2	ENSMUST00000194852.2	576	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACGTCCATGGTAGGTG	606	False	NA	NA	False	NA	NA	NA	67515114	67514538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_67514500_67515100
ES_00036275	chr3	-	4075	20	FSM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	11	-22	0	-4	multi-exon	FALSE	non_canonical	3	27	junction_10	3.97847393451879	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGAAGTCTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	68911892	68799835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
ES_00036276	chr3	-	260	1	FSM	ENSMUSG00000093384.2	ENSMUST00000176033.2	279	1	19	0	19	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTCCTCTGAGTAGAGA	NA	False	NA	NA	False	NA	NA	NA	68807763	68807503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_68807500_68807800
ES_00036280	chr3	-	2972	3	NNC	ENSMUSG00000034317.15	novel	2939	3	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	297.5	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGACATAGTTTTCTTAT	NA	False	NA	-5	True	AATAAA	-27	NA	68952055	68942619	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_68945342_68951100_68951176_68951880
ES_00036281	chr3	-	2940	3	FSM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	0	-1	0	1	multi-exon	FALSE	canonical	3	361	junction_2	117	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGACATAGTTTTCTTAT	NA	False	NA	-5	True	AATAAA	-27	NA	68952088	68942619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_68945342_68951100_68951176_68951945
ES_00036282	chr3	-	8822	17	FSM	ENSMUSG00000027782.11	ENSMUST00000029353.9	8819	17	0	-3	0	3	multi-exon	FALSE	canonical	3	213	junction_6	26.0353575690829	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGACTACCTAAAAGTCTT	NA	False	NA	-1	True	NA	NA	NA	69034446	68974478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_68981521_68984082_68984178_68986709_68986873_68988491_68988564_68991382_68991488_68993019_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
ES_00036283	chr3	-	256	1	FSM	ENSMUSG00000091315.2	ENSMUST00000164501.2	541	1	196	89	196	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAACAGATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	69227722	69227466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_69227500_69227700
ES_00036284	chr3	-	303	1	FSM	ENSMUSG00000098006.2	ENSMUST00000183259.2	1014	1	313	398	313	-398	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCATGGGGCTGCCCAGA	NA	False	NA	NA	False	NA	NA	NA	69474484	69474181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_69474200_69474500
ES_00036287	chr3	-	1921	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	19	-13	0	13	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATTTAGTTATTTTTGT	NA	False	NA	2	True	ATTAAA	-26	NA	75464144	75423783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ES_00036288	chr3	-	1884	2	NIC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	3	0	intron_retention	FALSE	canonical	3	230	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563035	75554752	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_75556298_75562696
ES_00036289	chr3	-	1026	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	94	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75555246_75556106_75556298_75562696
ES_00036290	chr3	-	953	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6411250864577	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563090	75554752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562993
ES_00036291	chr3	-	1857	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-64	0	intron_retention	FALSE	canonical	3	25	junction_2	102.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563102	75554752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_75556298_75562696_75562869_75562962
ES_00036292	chr3	-	1756	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	6	0	intron_retention	FALSE	canonical	3	71	junction_2	79.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563032	75554752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_75556298_75562696_75562869_75562993
ES_00036293	chr3	-	2085	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-64	209	intron_retention	FALSE	canonical	3	11	junction_2	109.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTCTGTCTCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	75563102	75554543	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_75556298_75562696_75562888_75562962
ES_00036294	chr3	-	5048	16	FSM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	17	-514	-1	514	multi-exon	FALSE	canonical	3	22	junction_8	6.26950290427133	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGACACTATTAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	75864239	75782975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
ES_00036295	chr3	-	778	3	FSM	ENSMUSG00000034109.16	ENSMUST00000125405.2	817	3	0	39	0	-39	multi-exon	FALSE	canonical	3	30	junction_2	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACATACATTTTTGTTAC	NA	False	NA	NA	False	CATAAA	-12	NA	75863957	75817201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75817366_75818881_75818957_75863418
ES_00036296	chr3	-	1746	1	FSM	ENSMUSG00000037096.7	ENSMUST00000036976.7	444	1	-404	-898	-404	898	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTTAAATGCCATCAGA	NA	False	NA	NA	False	NA	NA	NA	78874510	78872764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_78872800_78874500
ES_00036297	chr3	-	7746	30	FSM	ENSMUSG00000062232.15	ENSMUST00000195708.2	6964	30	-764	-18	-764	3	multi-exon	FALSE	canonical	3	31	junction_16	7.69637869042917	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGAATTGTGCATGCTT	NA	False	NA	-3	True	AATAAA	-31	NA	79194588	78969819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051_78993436_78995151_78995393_78995951_78996110_78999118_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79077045_79077064_79080214_79080383_79082280_79082357_79103241_79103326_79117997_79118055_79122263_79122335_79193770
ES_00036299	chr3	-	7302	18	FSM	ENSMUSG00000061175.13	ENSMUST00000133154.7	7299	18	0	-3	0	3	multi-exon	FALSE	canonical	3	55	junction_17	18.4325197807334	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCGTTTGTAGTTCCT	8092	False	NA	2	True	AATAAA	-20	NA	79475103	79363277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79474815
ES_00036301	chr3	-	7640	18	NIC	ENSMUSG00000061175.13	novel	7299	18	NA	NA	-258	37	combination_of_known_junctions	TRUE	canonical	3	39	junction_17	21.062273788996	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGAATTTTCCAGGAA	NA	False	NA	36	True	NA	NA	NA	79439441	79363243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79438849
ES_00036304	chr3	-	3740	3	FSM	ENSMUSG00000027809.15	ENSMUST00000149511.2	3740	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATATAAATGTTTACACTC	3729	False	NA	NA	False	AATAAA	-11	NA	79536025	79526873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_79530275_79530847_79530986_79535824
ES_00036306	chr3	-	2734	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79750205	79719870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
ES_00036307	chr3	-	3010	10	FSM	ENSMUSG00000028020.17	ENSMUST00000029654.15	3029	10	14	5	14	-5	multi-exon	FALSE	canonical	3	21	junction_1	6.91214711777591	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCATTTGCTCTTTACTG	NA	False	NA	-16	True	ATTAAA	-17	NA	80820953	80750910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
ES_00036308	chr3	-	2668	11	NNC	ENSMUSG00000028020.17	novel	3029	10	NA	NA	-15	-378	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	12.2918672300021	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATTTTTTTTATTTAT	NA	False	NA	NA	False	ATTAAA	-36	NA	80820936	80751283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_80752565_80757734_80757783_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
ES_00036309	chr3	-	1099	8	FSM	ENSMUSG00000028020.17	ENSMUST00000107743.8	1101	8	0	2	0	-2	multi-exon	FALSE	canonical	3	32	junction_4	4.17475405605784	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTCTGGTTTTGTATTT	NA	False	NA	NA	False	AATAAA	-18	NA	80820835	80762937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
ES_00036310	chr3	-	895	1	FSM	ENSMUSG00000102710.2	ENSMUST00000192718.2	785	1	50	-160	50	160	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCCTTGTCTGCTAATA	NA	False	NA	NA	False	NA	NA	NA	81464082	81463187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_81463200_81464100
ES_00036311	chr3	-	3010	3	FSM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	5	-1	5	1	multi-exon	FALSE	canonical	3	25	junction_2	5.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGTTTCTCTGTTTTTCT	NA	False	NA	0	True	TATAAA	-17	NA	83749069	83743577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_83746097_83748195_83748444_83748826
ES_00036312	chr3	-	5554	35	FSM	ENSMUSG00000033767.15	ENSMUST00000191758.6	5555	35	0	1	0	-1	multi-exon	FALSE	canonical	3	49	junction_6	12.592082974362	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCCACTTTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-40	NA	83947482	83804962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ES_00036313	chr3	-	5356	34	NIC	ENSMUSG00000033767.15	novel	5555	35	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	14.3287519105165	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCCACTTTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-40	NA	83947467	83804962	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ES_00036317	chr3	-	887	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	0	-12	0	12	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGGTAAGTGTATCCC	NA	False	NA	NA	False	AATAAA	-27	NA	84063093	83995227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ES_00036318	chr3	-	7202	12	FSM	ENSMUSG00000027993.17	ENSMUST00000107695.9	7200	12	0	-2	0	0	multi-exon	FALSE	canonical	2	2	junction_11	27.7929178207639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGAGTGTTTATTCAACA	NA	False	NA	-19	True	AATAAA	-21	NA	84128196	84067745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84127935
ES_00036319	chr3	-	7351	12	FSM	ENSMUSG00000027993.17	ENSMUST00000107691.8	7428	12	78	-1	78	0	multi-exon	FALSE	canonical	3	5	junction_11	27.3305447747744	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGAGTGTTTATTCAACA	NA	False	NA	-19	True	AATAAA	-21	NA	84167041	84067745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84166631
ES_00036325	chr3	-	2877	8	NIC	ENSMUSG00000074513.10	novel	1343	9	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_7	75.7862191985335	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489925	84403399	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84489720
ES_00036328	chr3	-	997	7	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	0	47725	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3744.73218520215	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTCACACAATCAGTAAC	NA	False	NA	NA	False	NA	NA	NA	86050009	85997521	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_85997547_86045251_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00036329	chr3	-	1010	7	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	0	20760	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3744.73218520215	1283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCACCCACAGGCCAGCA	NA	False	NA	NA	False	NA	NA	NA	86050009	86024486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_86024525_86045251_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00036330	chr3	-	1011	7	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	0	20760	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3744.73218520215	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCACCCACAGGCCAGCA	NA	False	NA	NA	False	NA	NA	NA	86050009	86024486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_86024523_86045248_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00036331	chr3	-	977	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86050009	86045246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00036334	chr3	-	10014	14	FSM	ENSMUSG00000028078.15	ENSMUST00000191752.6	8042	14	-556	-1416	-83	1416	multi-exon	FALSE	canonical	3	16	junction_1	78.2584853708809	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTGCTACACGTG	NA	False	NA	NA	False	NA	NA	NA	86828242	86692041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86699419_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723741_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ES_00036335	chr3	-	4101	16	FSM	ENSMUSG00000028078.15	ENSMUST00000029719.14	4012	16	-85	-4	-85	2	multi-exon	FALSE	canonical	3	73	junction_11	51.275031827283	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGGGTGAAATTTCTG	NA	False	NA	1	True	AATAAA	-24	NA	86828244	86693455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723741_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ES_00036336	chr3	-	4024	16	NIC	ENSMUSG00000028078.15	novel	3486	16	NA	NA	-85	2	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	61.1551760324141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGGGTGAAATTTCTG	NA	False	NA	1	True	AATAAA	-24	NA	86828244	86693455	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_86694720_86699375_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ES_00036337	chr3	-	8680	15	NIC	ENSMUSG00000028078.15	novel	3486	16	NA	NA	-85	2	intron_retention	FALSE	canonical	3	155	junction_10	35.5484722252732	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGGGTGAAATTTCTG	NA	False	NA	1	True	AATAAA	-24	NA	86828244	86693455	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ES_00036338	chr3	-	2627	12	FSM	ENSMUSG00000028078.15	ENSMUST00000194452.2	2066	12	-561	0	-83	0	multi-exon	FALSE	canonical	3	155	junction_7	39.3729781062936	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACACACCTTTCTCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	86828242	86706227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ES_00036339	chr3	-	2592	3	FSM	ENSMUSG00000028076.13	ENSMUST00000107620.3	1475	3	-1113	-4	-106	4	multi-exon	FALSE	canonical	3	84	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGAGGTTTTACTTGGTG	NA	False	NA	NA	False	AATAAA	-24	NA	86906367	86903136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86903909_86903996_86904094_86904644
ES_00036340	chr3	-	1853	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	91	2	-9	-2	multi-exon	FALSE	canonical	3	57	junction_4	13.2	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATCCAGAGGTTTTAC	NA	False	NA	NA	False	AATAAA	-18	NA	86906657	86903142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
ES_00036341	chr3	-	1851	5	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	378	3	-109	-3	3prime_fragment	FALSE	canonical	3	57	junction_4	12.9687123493429	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATCCAGAGGTTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	86906370	86903143	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939
ES_00036343	chr3	-	7230	16	FSM	ENSMUSG00000041734.16	ENSMUST00000107618.9	7278	16	56	-8	9	0	multi-exon	FALSE	canonical	3	30	junction_15	10.3850319637875	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTCTGTGTTATTTTA	NA	False	NA	NA	False	AAAAAG	-3	NA	87081998	86985899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048430_87081702
ES_00036344	chr3	-	7236	16	FSM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_15	12.9144191593049	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTCTGTGTTATTTTA	NA	False	NA	NA	False	AAAAAG	-3	NA	87082007	86985899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048427_87081702
ES_00036349	chr3	-	2492	8	FSM	ENSMUSG00000004896.17	ENSMUST00000005016.16	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	29.6922995583236	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGGAGCCTGTGTCAC	9443	False	NA	NA	False	AATAAA	-13	NA	87837451	87830211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
ES_00036351	chr3	-	1566	8	NNC	ENSMUSG00000004896.17	novel	2492	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_7	40.8111629386883	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTAATTTTTATTTC	9446	False	NA	-22	True	TATAAA	-27	NA	87837448	87830964	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837332
ES_00036352	chr3	-	2756	5	FSM	ENSMUSG00000004896.17	ENSMUST00000159831.8	2751	5	0	-5	0	0	multi-exon	FALSE	canonical	3	72	junction_4	20.920982290514	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTAATTTTTATTTC	9443	False	NA	-22	True	TATAAA	-27	NA	87837451	87830964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_87832739_87834037_87834182_87834361_87834425_87834869_87835356_87837162
ES_00036353	chr3	-	1568	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160143.2	1568	7	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	33.5596483890997	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACCAGTGCCAATATGG	9004	False	NA	NA	False	NA	NA	NA	87837890	87831089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_87831220_87831650_87831836_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
ES_00036356	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_3	34.2963554915096	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965802	87963826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ES_00036358	chr3	-	397	3	NNC	ENSMUSG00000103766.6	novel	1197	8	NA	NA	5905	-34247	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	6.5	146	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGCCACCTCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	88188612	88186748	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88186818_88187238_88187460_88188505
ES_00036359	chr3	-	582	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	0	2	0	1	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACATGGGTCTGAGT	NA	False	NA	NA	False	CATAAA	-12	NA	88204306	88190065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
ES_00036360	chr3	-	2406	4	FSM	ENSMUSG00000001420.14	ENSMUST00000001456.11	2406	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	5.18544972870135	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATAAGAGAGACTGG	NA	False	NA	NA	False	NA	NA	NA	88241811	88235961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241688
ES_00036364	chr3	-	348	4	FSM	ENSMUSG00000074486.3	ENSMUST00000098956.3	471	4	35	88	35	-88	multi-exon	FALSE	canonical	3	94	junction_3	1.88561808316413	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCCGGGACTTGATCCT	1207	False	NA	NA	False	NA	NA	NA	88285971	88285130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88285310_88285515_88285574_88285716_88285750_88285893
ES_00036370	chr3	-	3508	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	0	-4	0	3	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCTTTTGGGTTTTGT	4093	False	NA	0	True	ATTAAA	-22	NA	88332419	88317801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
ES_00036372	chr3	-	3449	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	-17	-3	-13	3	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCTTTTGGGTTTTGT	4080	False	NA	0	True	ATTAAA	-22	NA	88332432	88317801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
ES_00036375	chr3	-	1912	6	FSM	ENSMUSG00000028064.18	ENSMUST00000135539.8	2487	6	576	-1	576	1	multi-exon	FALSE	canonical	3	10	junction_5	11.6858889263932	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTATGGCGTGCTGTGC	NA	False	NA	NA	False	ATTAAA	-21	NA	88355361	88343267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297
ES_00036376	chr3	-	3157	12	FSM	ENSMUSG00000028063.16	ENSMUST00000029699.13	3156	12	0	-1	0	1	multi-exon	FALSE	canonical	3	31	junction_1	44.0904404848575	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTGGTGTCTCTTTGT	NA	False	NA	-2	True	AATACA	-20	NA	88410642	88388453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88389408_88389652_88389920_88390624_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ES_00036377	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	-1	True	ATTAAA	-19	NA	88410614	88390511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ES_00036381	chr3	-	569	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	-1	0	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1142	False	NA	-6	True	AATAAA	-14	NA	88460166	88457125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
ES_00036382	chr3	-	440	3	FSM	ENSMUSG00000028062.16	ENSMUST00000156421.2	438	3	0	-2	0	0	multi-exon	FALSE	canonical	3	32	junction_2	1321	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1108	False	NA	-6	True	AATAAA	-14	NA	88460200	88457125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88457312_88458002_88458093_88460036
ES_00036383	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	977	False	NA	-6	True	AATAAA	-14	NA	88460331	88457125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ES_00036384	chr3	-	587	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	0	-20	0	20	multi-exon	FALSE	canonical	3	2467	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAGGGTCCATCTCAG	927	False	NA	NA	False	AATAAA	-42	NA	88460381	88459516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88459825_88460102
ES_00036385	chr3	-	730	1	FSM	ENSMUSG00000074479.4	ENSMUST00000098952.4	730	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCACATGAGGATGTCAG	8827	False	NA	NA	False	NA	NA	NA	88484446	88483716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88483700_88484400
ES_00036386	chr3	-	594	3	NNC	ENSMUSG00000098912.8	novel	823	3	NA	NA	-63804	2697	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	105	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCAACATCCAACTTCAC	NA	False	NA	NA	False	NA	NA	NA	88803658	88724254	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88724405_88728442_88728654_88803425
ES_00036387	chr3	-	1848	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	0	27	0	2	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	-34	True	AATAAA	-17	NA	88821306	88816948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ES_00036388	chr3	-	1874	14	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	-29	2	at_least_one_novel_splicesite	FALSE	canonical	3	215	junction_1	142.181149559078	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	-34	True	AATAAA	-17	NA	88821335	88816948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88817215_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ES_00036389	chr3	-	3862	3	FSM	ENSMUSG00000068922.15	ENSMUST00000147828.2	3891	3	0	29	0	-29	multi-exon	FALSE	canonical	3	722	junction_1	40.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTTATAATAAAAGCTG	NA	False	NA	-65	True	NA	NA	NA	88821210	88816979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88818322_88818593_88818747_88818843
ES_00036391	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ES_00036395	chr3	-	1487	12	NNC	ENSMUSG00000059743.13	novel	1382	11	NA	NA	-5	11020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1015.88115072418	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	89009271	88989874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88989904_89000894_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
ES_00036396	chr3	-	2212	11	NNC	ENSMUSG00000059743.13	novel	1382	11	NA	NA	-5	11020	intron_retention	FALSE	non_canonical	0	0	junction_1	913.357016724567	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	89009271	88989874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88989904_89000894_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227
ES_00036398	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009195	89000894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
ES_00036399	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009266	89000894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
ES_00036410	chr3	-	1334	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	0	-2	0	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177832	89175552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
ES_00036414	chr3	-	1478	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	0	2	0	1	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTTTCTGCCCCACCA	1666	False	NA	NA	False	AATAAA	-19	NA	89186952	89179041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
ES_00036417	chr3	-	3015	23	NNC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	39.5830542254913	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257281	89246946	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89247261_89247361_89247487_89247707_89247780_89248420_89248558_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00036418	chr3	-	2893	22	FSM	ENSMUSG00000028041.18	ENSMUST00000107448.9	2893	22	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	33.3036602620203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257296	89246946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00036419	chr3	-	2975	23	FSM	ENSMUSG00000028041.18	ENSMUST00000029676.12	2975	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	32.1478056009843	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257303	89246946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00036420	chr3	-	3027	24	NNC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	41.100089918446	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGCTCCTGGAAGCT	NA	False	NA	-15	True	AATAAA	-16	NA	89257301	89246950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89247261_89247361_89247481_89247707_89247780_89248019_89248084_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00036423	chr3	-	1038	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	0	-4	0	4	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTTTGATTTGCTTTTG	NA	False	NA	NA	False	ATTAAA	-28	NA	89257267	89253830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00036427	chr3	-	2892	8	FSM	ENSMUSG00000042642.14	ENSMUST00000129308.9	2892	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_7	45.7504321380282	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAGGGCATGTGTG	3744	False	NA	0	True	AATAAA	-35	NA	89319170	89309275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
ES_00036428	chr3	-	2238	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCTTCTGCTGAGCTGC	3738	False	NA	NA	False	AATAAA	-21	NA	89319176	89309973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
ES_00036429	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325690	89322778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89323271_89323580_89323709_89325461
ES_00036430	chr3	-	2791	2	FSM	ENSMUSG00000042579.3	ENSMUST00000038450.2	2791	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGAAAACATTCCTT	2638	False	NA	NA	False	AATAAA	-24	NA	89680547	89674817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89676870_89679808
ES_00036431	chr3	-	8624	10	FSM	ENSMUSG00000027947.12	ENSMUST00000197679.5	8639	10	15	0	15	0	multi-exon	FALSE	canonical	2	3	junction_6	3.80058475033046	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGCCAAGTGTCCTTG	NA	False	NA	NA	False	AATAAA	-16	NA	89820488	89771365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786200_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
ES_00036432	chr3	-	3343	10	FSM	ENSMUSG00000027947.12	ENSMUST00000029559.7	3343	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	3.80058475033046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCAGGGGATCGGCGAC	NA	False	NA	NA	False	ATTAAA	-17	NA	89820469	89776630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786203_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
ES_00036433	chr3	-	5560	27	FSM	ENSMUSG00000060671.13	ENSMUST00000069805.14	5559	27	0	-1	0	1	multi-exon	FALSE	canonical	3	88	junction_26	26.7970677544519	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTGTCTCTTTTCTTTG	3812	False	NA	2	True	TATAAA	-44	NA	89867936	89846786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89867591
ES_00036436	chr3	-	428	6	FSM	ENSMUSG00000060671.13	ENSMUST00000168880.8	459	6	31	0	31	0	multi-exon	FALSE	canonical	2	6	junction_5	66.2099690379024	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATTCTCAGGTGCTGAT	1358	False	NA	NA	False	NA	NA	NA	89870390	89865313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89868381_89868449_89870334
ES_00036438	chr3	-	1099	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	-7	0	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7221	False	NA	NA	False	AATAAA	-26	NA	89905973	89902752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
ES_00036439	chr3	-	867	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197786.5	857	6	0	-10	0	0	multi-exon	FALSE	canonical	3	24	junction_4	742.362876226984	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7210	False	NA	NA	False	AATAAA	-26	NA	89905984	89902752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905108_89905311_89905834
ES_00036440	chr3	-	1291	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	0	-11	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7201	False	NA	NA	False	AATAAA	-26	NA	89905993	89902752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
ES_00036441	chr3	-	1139	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	0	0	0	0	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7190	False	NA	NA	False	AATAAA	-26	NA	89906004	89902752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
ES_00036447	chr3	-	3489	29	NIC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	137	junction_1	282.60942435576	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3592	False	NA	-9	True	AATAAA	-21	NA	89959737	89907446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036448	chr3	-	3392	27	FSM	ENSMUSG00000042520.17	ENSMUST00000198322.5	3385	27	-7	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	317.141774803389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3560	False	NA	-9	True	AATAAA	-21	NA	89959769	89907446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89907561_89909585_89909781_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036449	chr3	-	3509	29	FSM	ENSMUSG00000042520.17	ENSMUST00000029553.16	3509	29	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	263.472271321105	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3557	False	NA	-9	True	AATAAA	-21	NA	89959772	89907446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036450	chr3	-	4138	28	FSM	ENSMUSG00000042520.17	ENSMUST00000196843.5	3975	28	-10	-153	0	0	multi-exon	FALSE	canonical	3	275	junction_1	196.719480946381	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3550	False	NA	-9	True	AATAAA	-21	NA	89959779	89907446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ES_00036451	chr3	-	4219	29	NIC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	197	junction_1	232.539682810553	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3520	False	NA	-9	True	AATAAA	-21	NA	89959809	89907446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ES_00036452	chr3	-	4208	28	FSM	ENSMUSG00000042520.17	ENSMUST00000064639.15	4073	28	13	-148	0	0	multi-exon	FALSE	canonical	3	275	junction_1	252.379539778417	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3560	False	NA	-9	True	AATAAA	-21	NA	89959769	89907446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036453	chr3	-	3630	25	FSM	ENSMUSG00000042520.17	ENSMUST00000090908.11	3629	25	0	-1	0	1	multi-exon	FALSE	canonical	3	158	junction_17	264.856079891619	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTATGCTTTTATGTCT	3570	False	NA	NA	False	AATAAA	-19	NA	89959759	89913299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036454	chr3	-	3706	26	NIC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	281	junction_25	245.100808648197	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACTGATTTCCTATGCT	3560	False	NA	NA	False	AATAAA	-10	NA	89959769	89913308	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036455	chr3	-	3679	26	NIC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	320	junction_1	177.654063843189	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACTGATTTCCTATGCT	3507	False	NA	NA	False	AATAAA	-10	NA	89959822	89913308	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ES_00036456	chr3	-	3503	12	FSM	ENSMUSG00000042520.17	ENSMUST00000197177.5	3503	12	0	0	0	0	multi-exon	FALSE	canonical	3	915	junction_2	55.1643674668398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGCGTTCTTTCCGTG	NA	False	NA	-3	True	AATAAA	-20	NA	89928600	89913525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545
ES_00036457	chr3	-	3517	26	FSM	ENSMUSG00000042520.17	ENSMUST00000195995.5	3516	26	0	-1	0	0	multi-exon	FALSE	canonical	3	204	junction_21	259.732465433184	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGCGTTCTTTCCGTG	3550	False	NA	-3	True	AATAAA	-20	NA	89959779	89913525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00036458	chr3	-	3495	26	FSM	ENSMUSG00000042520.17	ENSMUST00000199834.5	3494	26	0	-1	0	0	multi-exon	FALSE	canonical	3	204	junction_21	230.048746138726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGCGTTCTTTCCGTG	3507	False	NA	-3	True	AATAAA	-20	NA	89959822	89913525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ES_00036461	chr3	-	1558	5	FSM	ENSMUSG00000042520.17	ENSMUST00000199301.2	2318	5	760	0	760	0	multi-exon	FALSE	canonical	3	950	junction_1	39.6949304067912	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCCATAA	NA	False	NA	NA	False	NA	NA	NA	89933985	89927553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899
ES_00036462	chr3	-	265	1	FSM	ENSMUSG00000042520.17	ENSMUST00000199016.2	2396	1	1908	223	1908	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCCTGAATGCTAGGAT	NA	False	NA	NA	False	NA	NA	NA	89944255	89943990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89944000_89944300
ES_00036468	chr3	-	344	4	NNC	ENSMUSG00000090733.7	novel	546	4	NA	NA	0	35519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8818.28286383844	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAGATGGCTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	90120608	90084309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90084352_90119978_90120061_90120240_90120352_90120499
ES_00036469	chr3	-	375	5	NNC	ENSMUSG00000090733.7	novel	458	5	NA	NA	0	35516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7679.34591534331	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	90120952	90084312	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90084352_90119980_90120061_90120240_90120352_90120499_90120609_90120916
ES_00036470	chr3	-	640	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	0	0	0	0	multi-exon	FALSE	canonical	3	15374	junction_1	2726.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120941	90119973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120061_90120240_90120352_90120499
ES_00036471	chr3	-	550	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	0	-4	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120930	90119973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
ES_00036472	chr3	-	333	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197361.5	329	4	0	-4	0	0	multi-exon	FALSE	canonical	2	296	junction_1	8530.83639249725	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120955	90119973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120048_90120240_90120352_90120499_90120609_90120916
ES_00036473	chr3	-	349	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	0	-4	0	0	multi-exon	FALSE	canonical	3	13930	junction_3	2970.01597451746	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120958	90119973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
ES_00036474	chr3	-	672	2	FSM	ENSMUSG00000090733.7	ENSMUST00000199428.2	672	2	0	0	0	0	multi-exon	FALSE	canonical	3	20827	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTTAGCACTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	90120953	90120133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120352_90120499
ES_00036475	chr3	-	279	2	FSM	ENSMUSG00000090733.7	ENSMUST00000196196.2	279	2	0	0	0	0	multi-exon	FALSE	canonical	3	13930	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTTCCCAGGATGCT	NA	False	NA	NA	False	AATAAA	-26	NA	90120952	90120365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120609_90120916
ES_00036478	chr3	-	4350	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	0	-13	0	5	multi-exon	FALSE	canonical	3	154	junction_21	22.3924035870797	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACATCTCTGTTCGTCCT	NA	False	NA	2	True	AATGAA	-29	NA	90340836	90298689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
ES_00036479	chr3	-	4498	31	FSM	ENSMUSG00000027933.12	ENSMUST00000071488.8	4038	31	-319	-141	0	141	multi-exon	FALSE	canonical	3	31	junction_1	39.1651914615801	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCACTTAGAAGCTGATG	NA	False	NA	NA	False	NA	NA	NA	90340929	90298553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90299219_90299299_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
ES_00036481	chr3	-	870	2	FSM	ENSMUSG00000027931.13	ENSMUST00000152510.2	949	2	79	0	79	0	multi-exon	FALSE	canonical	3	173	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCCACCACCTGCCCCA	NA	False	NA	NA	False	NA	NA	NA	90359009	90358016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90358490_90358612
ES_00036484	chr3	-	1505	3	FSM	ENSMUSG00000001018.16	ENSMUST00000185005.2	1505	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	-26	True	AATAAA	-23	NA	90398300	90395676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90396901_90397460_90397580_90398138
ES_00036486	chr3	-	604	4	NNC	ENSMUSG00000044080.10	novel	677	3	NA	NA	-16	19330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.314525556552	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAGTGGGAGAGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	90421601	90399010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90399037_90418341_90418672_90419302_90419457_90421507
ES_00036487	chr3	-	3118	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107343.8	3118	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	621.962664117032	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416757	90406262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90407415_90410402_90410590_90413414_90414934_90416497
ES_00036488	chr3	-	3257	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_3	258.017804618208	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416758	90406262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
ES_00036490	chr3	-	2019	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	0	-7	0	0	multi-exon	FALSE	canonical	3	892	junction_3	230.9202459725	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGCTTTCTGTTTAT	NA	False	NA	-3	True	NA	NA	NA	90416805	90406264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ES_00036491	chr3	-	1321	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	566.644233624591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACATCTTTCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	90416781	90406800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ES_00036492	chr3	-	1231	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	677	junction_3	303.893007487833	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGTTGAGTTTGTTT	NA	False	NA	-28	True	NA	NA	NA	90416757	90407001	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
ES_00036493	chr3	-	2411	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107342.2	2411	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	627.621435792841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGTTGAGTTTGTTT	NA	False	NA	-28	True	NA	NA	NA	90416792	90407001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90407415_90410402_90410587_90413414_90414934_90416497
ES_00036500	chr3	-	6310	12	FSM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	-49	0	-49	0	multi-exon	FALSE	canonical	3	75	junction_1	37.6139590757922	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	NA	False	NA	-2	True	AATAAA	-21	NA	94490072	94404850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
ES_00036501	chr3	-	5300	12	FSM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	0	-1769	0	0	multi-exon	FALSE	canonical	3	101	junction_1	30.5951975921464	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	NA	False	NA	-2	True	AATAAA	-21	NA	94489856	94404850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
ES_00036502	chr3	-	396	1	FSM	ENSMUSG00000062896.4	ENSMUST00000119898.2	377	1	0	-19	0	19	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAACTGCCAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	94512091	94511695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94511700_94512100
ES_00036503	chr3	-	2631	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6441	False	NA	-5	True	AATAAA	-16	NA	94566178	94520063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
ES_00036504	chr3	-	2557	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	0	-2	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6440	False	NA	-5	True	AATAAA	-16	NA	94566179	94520063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
ES_00036507	chr3	-	4959	21	FSM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	0	4	0	-4	multi-exon	FALSE	canonical	3	13	junction_12	7.64509646767129	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTCTTGTCTTCATTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	94693774	94667379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685376_94685510_94685581_94685688_94685790_94686460_94687330_94693686
ES_00036508	chr3	-	1186	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	0	-3	0	3	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTCTTTCTCAATTATT	NA	False	NA	NA	False	NA	NA	NA	94794272	94791400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
ES_00036509	chr3	-	666	5	FSM	ENSMUSG00000005779.13	ENSMUST00000133412.8	666	5	0	0	0	0	multi-exon	FALSE	canonical	3	1712	junction_2	94.1604348970416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAAATTCTGGAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	94794173	94792208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
ES_00036512	chr3	-	4632	9	FSM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	42.3657807080195	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTGTGTTTGGTGCCT	NA	False	NA	-2	True	AAAAAG	-13	NA	94922549	94914012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922421
ES_00036517	chr3	-	212	1	Intergenic	novelGene_2617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAACATACTTTATTAACA	NA	False	NA	NA	False	NA	NA	NA	94928706	94928494	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_94928500_94928700
ES_00036518	chr3	-	1355	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	0	-23	0	23	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGAGGAGTGGGCCTG	NA	False	NA	13	True	NA	NA	NA	94949925	94939981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ES_00036519	chr3	-	1279	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	0	-3	0	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATAGTGATAGCTTTG	NA	False	NA	-10	True	AATAAA	-25	NA	94949863	94940004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ES_00036520	chr3	-	1756	9	FSM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_2	388.88942435479	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTTTTGCTTCAAATAG	NA	False	NA	-21	True	AATAAA	-14	NA	94949854	94940015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ES_00036521	chr3	-	3647	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107233.9	3663	15	18	-2	18	2	multi-exon	FALSE	canonical	3	28	junction_14	7.6080650011172	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATGCTTTTATTAG	1216	False	NA	1	True	ATTAAA	-24	NA	95014223	94965851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990140_95013686
ES_00036522	chr3	-	728	2	FSM	ENSMUSG00000028126.17	ENSMUST00000107229.2	724	2	0	-4	0	4	multi-exon	FALSE	canonical	3	23	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTAGAGGAGTTGGTCC	1305	False	NA	NA	False	AATAAA	-37	NA	95014134	95004349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95004630_95013686
ES_00036523	chr3	-	777	2	NNC	ENSMUSG00000028126.17	novel	724	2	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1313	False	NA	NA	False	AATAAA	-33	NA	95014126	95004353	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_95004691_95013686
ES_00036524	chr3	-	953	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	0	101	0	82	multi-exon	FALSE	canonical	3	365	junction_2	27.675199487387	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCCCCATACTTCTGG	1238	False	NA	59	True	NA	NA	NA	95041322	95036947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ES_00036526	chr3	-	8502	8	NIC	ENSMUSG00000038766.17	novel	8661	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	6.73704349860091	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCAGTATTGTT	8776	False	NA	-29	True	AATAAA	-11	NA	95125227	95089083	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95124899
ES_00036527	chr3	-	8679	10	FSM	ENSMUSG00000038766.17	ENSMUST00000136139.8	8661	10	0	-18	0	18	multi-exon	FALSE	canonical	2	6	junction_7	7.40036702459854	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACAGCATGGTTAAAAA	8776	False	NA	-4	True	AATAAA	-36	NA	95125227	95089058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
ES_00036530	chr3	-	1289	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTCTCATTTTTCT	NA	False	NA	-1	True	AATATA	-21	NA	95148909	95144417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95144541_95147260_95147423_95147905
ES_00036532	chr3	-	5652	21	FSM	ENSMUSG00000015697.15	ENSMUST00000124638.8	5652	21	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_10	48.5557411641507	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1689	False	NA	-4	True	ATTAAA	-15	NA	95264466	95230835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
ES_00036533	chr3	-	4658	22	FSM	ENSMUSG00000015697.15	ENSMUST00000015841.12	4658	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_21	51.1160255943511	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1644	False	NA	-4	True	ATTAAA	-15	NA	95264511	95230835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264337
ES_00036534	chr3	-	4622	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107170.3	4622	22	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	31.3428122874475	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1642	False	NA	-4	True	ATTAAA	-15	NA	95264513	95230835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
ES_00036536	chr3	-	636	1	FSM	ENSMUSG00000096177.3	ENSMUST00000177599.3	862	1	270	-44	270	44	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-18	NA	95318248	95317612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95317600_95318200
ES_00036537	chr3	-	539	1	FSM	ENSMUSG00000104646.2	ENSMUST00000198054.2	400	1	-42	-97	-42	97	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGATGGCCCTGTTTTT	8910	False	NA	NA	False	TATAAA	-36	NA	95322778	95322239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95322200_95322800
ES_00036538	chr3	-	2402	19	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	19245	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	150.297287704596	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAGAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	95662150	95628042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_95628076_95647285_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ES_00036541	chr3	-	635	4	FSM	ENSMUSG00000028107.15	ENSMUST00000200376.2	577	4	0	-58	0	15	multi-exon	FALSE	canonical	3	11	junction_2	257.450318831938	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTCCGAATGCTTTAC	9936	False	NA	-4	True	AATAAA	-31	NA	95649458	95647272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95647632_95648339_95648428_95648633_95648749_95649385
ES_00036542	chr3	-	2336	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	-164	-15	-152	15	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTCCGAATGCTTTAC	NA	False	NA	-4	True	AATAAA	-31	NA	95662347	95647272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
ES_00036543	chr3	-	2039	16	FSM	ENSMUSG00000028107.15	ENSMUST00000199464.5	2037	16	0	-2	0	2	multi-exon	FALSE	canonical	1	10	junction_13	192.904973727711	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662163	95647285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95660318_95660443_95661630_95661828_95662069
ES_00036544	chr3	-	2402	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	0	-2	0	2	multi-exon	FALSE	canonical	1	178	junction_5	104.738626737206	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	-17	True	AATAAA	-18	NA	95662183	95647285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ES_00036545	chr3	-	2064	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	21	junction_13	168.56518686319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTGTGCCTTCATCTG	NA	False	NA	-20	True	AATAAA	-15	NA	95662163	95647288	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658817_95658943_95660318_95660443_95662069
ES_00036548	chr3	-	714	4	FSM	ENSMUSG00000028107.15	ENSMUST00000198194.5	714	4	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	91.9818822739928	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCGCTCTGAGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	95661784	95657985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95658297_95658817_95658943_95660318_95660443_95661630
ES_00036549	chr3	-	8780	10	FSM	ENSMUSG00000028107.15_ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-824	-458	-593	458	multi-exon	FALSE	canonical	3	28	junction_2	34.4318973563113	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCGTGGTTAACTTTTCCC	9934	False	NA	NA	False	AATAAA	-16	NA	95726768	95667194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95673733_95679307_95679509_95681423_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
ES_00036551	chr3	-	3215	8	ISM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-141	11914	5	0	5prime_fragment	FALSE	canonical	3	55	junction_5	20.2957721544892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAGTGTCATGAATTG	10015	False	NA	-4	True	ATTAAA	-15	NA	95726085	95679566	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
ES_00036552	chr3	-	3315	9	FSM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	0	-17	0	17	multi-exon	FALSE	canonical	3	54	junction_5	23.6851087183488	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTATTGCATTTTCTTG	10010	False	NA	13	True	ATTAAA	-32	NA	95726090	95679549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
ES_00036554	chr3	-	2324	16	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	0	32554	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.494121237867	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAGAGAGAGAATTT	939	False	NA	NA	False	NA	NA	NA	95760944	95704881	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_95704908_95737928_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755
ES_00036555	chr3	-	2933	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGAGGCAGGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	95763197	95737435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
ES_00036556	chr3	-	488	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	False	NA	NA	False	AATAAA	-37	NA	95778831	95769945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95770245_95777805_95777928_95778764
ES_00036557	chr3	-	1415	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	31	3	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	52.0292225580971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTTTTTTTTTTTTTT	NA	False	NA	2	True	ATTAAA	-18	NA	95789355	95785811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266
ES_00036558	chr3	-	1942	5	FSM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	0	-3	0	3	multi-exon	FALSE	canonical	3	167	junction_2	14.8723737177358	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTTTTTTTTTTTTTT	NA	False	NA	2	True	ATTAAA	-18	NA	95789517	95785811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492
ES_00036559	chr3	-	1403	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	0	-5	0	3	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTTTTTTTTTTTTTT	NA	False	NA	2	True	ATTAAA	-18	NA	95789543	95785811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
ES_00036561	chr3	-	745	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	7	0	-7	multi-exon	FALSE	canonical	2	9	junction_2	8.93532316147547	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAATTAATTTTGCCTA	NA	False	NA	NA	False	NA	NA	NA	95799267	95791276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ES_00036563	chr3	-	506	4	FSM	ENSMUSG00000038543.14	ENSMUST00000145949.8	551	4	0	45	0	-45	multi-exon	FALSE	canonical	3	30	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGTTTGGTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	95799263	95795315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95795609_95796168_95796228_95797034_95797122_95799196
ES_00036564	chr3	-	293	2	FSM	ENSMUSG00000038526.15	ENSMUST00000149202.2	984	2	93	598	93	-217	multi-exon	FALSE	canonical	3	4	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATTGGAACTGCACAT	7460	False	NA	NA	False	NA	NA	NA	95811903	95809422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95809444_95811631
ES_00036565	chr3	-	1626	6	FSM	ENSMUSG00000015745.10	ENSMUST00000015889.10	1931	6	-67	372	-67	18	multi-exon	FALSE	canonical	3	9	junction_2	1.49666295470958	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCACTGTGGCTTTTTCC	1324	False	NA	NA	False	NA	NA	NA	95903380	95896112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95896946_95898112_95898215_95898755_95898861_95899449_95899591_95902833_95902981_95903082
ES_00036566	chr3	-	2615	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	24	-2	24	2	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCAGTGTTTGATGGGC	NA	False	NA	-3	True	AATAAA	-28	NA	95965754	95907141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
ES_00036569	chr3	-	716	3	NNC	ENSMUSG00000015943.12	novel	692	3	NA	NA	-10	63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	220.5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTATTCCTTGATTTG	NA	False	NA	-7	True	AATAAA	-15	NA	96105815	96104115	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_96104596_96104865_96105038_96105751
ES_00036574	chr3	-	543	1	FSM	ENSMUSG00000118406.2	ENSMUST00000238714.2	397	1	0	-146	0	146	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTGTTGTGCAGA	NA	False	NA	NA	False	NA	NA	NA	96322149	96321606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96321600_96322100
ES_00036576	chr3	-	371	1	FSM	ENSMUSG00000118677.1	ENSMUST00000240510.1	166	1	4	-209	4	209	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	ATTAAA	-43	NA	96367501	96367130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96367100_96367500
ES_00036578	chr3	-	1174	2	FSM	ENSMUSG00000028104.15	ENSMUST00000141579.2	545	2	-99	-530	-99	0	multi-exon	FALSE	canonical	3	95	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96487570	96485187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96485905_96487113
ES_00036579	chr3	-	1237	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	0	-630	0	0	multi-exon	FALSE	canonical	3	25	junction_6	26.9794160220137	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501475	96485187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
ES_00036580	chr3	-	1410	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	17	0	-5	0	multi-exon	FALSE	canonical	3	65	junction_6	13.8534604827436	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501480	96485187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
ES_00036586	chr3	-	1039	8	FSM	ENSMUSG00000028100.12	ENSMUST00000029742.9	1039	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	22.7075461699679	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGGAGAGGCCCTACTC	NA	False	NA	-101	True	NA	NA	NA	96615855	96613483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
ES_00036588	chr3	-	926	3	FSM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	0	-3	0	0	multi-exon	FALSE	canonical	3	207	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGTGTGCCAGTCAT	NA	False	NA	-1	True	AATGAA	-22	NA	96634791	96630735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96631369_96633149_96633316_96634664
ES_00036591	chr3	-	6106	10	FSM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	0	-4	0	4	multi-exon	FALSE	canonical	3	19	junction_9	9.10162107389884	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTTTTTGTGCCTTGGC	NA	False	NA	-5	True	AATAAA	-25	NA	97134680	97110973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97134533
ES_00036593	chr3	-	2993	24	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	0	57199	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.1225431958219	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATTGGAAAACTTGGACAA	NA	False	NA	NA	False	NA	NA	NA	97517508	97410858	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_97410878_97468056_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498673_97501319_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ES_00036594	chr3	-	3032	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	0	59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTGATTAGGGAGAG	NA	False	NA	51	True	NA	NA	NA	97517508	97467998	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ES_00036595	chr3	-	3014	23	FSM	ENSMUSG00000028089.6	ENSMUST00000029730.5	3008	23	0	-6	0	6	multi-exon	FALSE	canonical	0	0	junction_16	88.0793336047933	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGCTTTTTTTCTTAC	NA	False	NA	-2	True	AATAGA	-19	NA	97517519	97468051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488294_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ES_00036596	chr3	-	2262	16	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	3	-2530	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	95.1025177841727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAAAAAAGAGTACTC	NA	False	NA	NA	False	AATAAA	-23	NA	97517505	97480880	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_97481429_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ES_00036598	chr3	-	6193	17	FSM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	2	-10	2	10	multi-exon	FALSE	canonical	3	63	junction_16	8.347903928532	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTATAGAAGTTTGTGC	NA	False	NA	1	True	AATAAA	-25	NA	97675323	97646159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987_97654080_97654832_97654915_97655080_97655252_97659124_97659320_97660331_97660512_97661441_97661580_97661747_97661862_97662754_97662914_97664199_97664413_97664519_97664613_97664847_97664968_97666114_97666247_97673789
ES_00036599	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	827	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ES_00036600	chr3	-	229	1	FSM	ENSMUSG00000105641.2	ENSMUST00000197183.2	632	1	280	123	280	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCAGCGAAAAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	98487434	98487205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_98487200_98487400
ES_00036604	chr3	-	4002	17	FSM	ENSMUSG00000033285.16	ENSMUST00000146989.8	4002	17	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_15	147.592132242881	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATGAAAGAACACAGAG	NA	False	NA	NA	False	AAGAAA	-5	NA	100069723	100049814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
ES_00036605	chr3	-	7974	13	FSM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	0	-5	0	5	multi-exon	FALSE	canonical	3	127	junction_4	6.86122357082823	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTCTCTCTTTTTTTTT	NA	False	NA	4	True	AATAAA	-20	NA	100592819	100469518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
ES_00036610	chr3	-	304	1	FSM	ENSMUSG00000033222.17	ENSMUST00000200506.2	1236	1	303	629	303	-629	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGACAGCACTGCATCCCC	NA	False	NA	NA	False	NA	NA	NA	100867008	100866704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_100866700_100867000
ES_00036617	chr3	-	5661	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	815	-4632	-175	35	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGTGAGCAGACACCAGTT	NA	False	NA	NA	False	NA	NA	NA	102073431	102060863	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
ES_00036618	chr3	-	6196	4	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	36978	-35	-742	35	3prime_fragment	FALSE	canonical	3	166	junction_1	66.1379030679248	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGTGAGCAGACACCAGTT	NA	False	NA	NA	False	NA	NA	NA	102075031	102060863	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153
ES_00036619	chr3	-	6531	8	FSM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	79.9721890434929	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATAGTGCAGTTCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	102112009	102060898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
ES_00036620	chr3	-	818	5	FSM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	100.023434754062	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTCCAGGAGGAAGTT	NA	False	NA	NA	False	AAAACA	-27	NA	102074246	102065495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102074153
ES_00036621	chr3	-	2703	6	NIC	ENSMUSG00000027860.16	novel	6531	8	NA	NA	49	1631	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	105.844036204219	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTTGGATGTTGTAGAC	NA	False	NA	NA	False	GATAAA	-44	NA	102111960	102068870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_102070850_102072670_102072804_102074153_102074288_102096724_102096864_102104107_102104293_102111827
ES_00036622	chr3	-	561	3	NNC	ENSMUSG00000027860.16	novel	617	3	NA	NA	-447	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	156.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102073703	102070501	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_102070850_102072670_102072804_102073623
ES_00036623	chr3	-	617	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	64	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074289	102070501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_102070850_102072670_102072804_102074153
ES_00036624	chr3	-	674	5	NNC	ENSMUSG00000027860.16	novel	818	5	NA	NA	-706	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	116.808604135141	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074995	102070501	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_102070850_102072670_102072804_102073088_102073128_102074153_102074288_102074975
ES_00036625	chr3	-	1630	7	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	99	9603	99	0	5prime_fragment	FALSE	canonical	3	72	junction_3	85.9348913745491	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102111910	102070501	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
ES_00036626	chr3	-	637	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	11	-176	11	-1	multi-exon	FALSE	canonical	3	141	junction_2	87.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATCTATGTACTTGTGT	NA	False	NA	-12	True	NA	NA	NA	102073245	102070502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_102070850_102072670_102072804_102073088
ES_00036627	chr3	-	3269	32	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	0	3	combination_of_known_junctions	TRUE	canonical	3	35	junction_31	16.9376649901153	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTCATTGATTTTTGT	NA	False	NA	1	True	ATTAAA	-17	NA	102843416	102725811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
ES_00036632	chr3	-	8050	17	NNC	ENSMUSG00000008730.18	novel	4185	16	NA	NA	0	10617	intron_retention	FALSE	non_canonical	0	0	junction_1	23.5531314266278	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	103698572	103636513	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_103636533_103647129_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695_103660831_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537_103685616_103698310
ES_00036633	chr3	-	4879	3	FSM	ENSMUSG00000027848.13	ENSMUST00000029440.10	5465	3	69	517	36	-502	multi-exon	FALSE	canonical	0	0	junction_1	1.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTGTGCAGGCCTGGTG	818	False	NA	NA	False	NA	NA	NA	103645248	103639497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103643980_103644267_103644554_103645137
ES_00036634	chr3	-	7995	16	FSM	ENSMUSG00000008730.18	ENSMUST00000029438.15	4185	16	40	-3850	40	5	multi-exon	FALSE	canonical	2	63	junction_1	12.16260206078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTTTCAATTCTGTGTT	NA	False	NA	3	True	AATAAA	-23	NA	103698532	103647125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695_103660831_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537_103685616_103698310
ES_00036637	chr3	-	1453	3	FSM	ENSMUSG00000027845.16	ENSMUST00000198752.2	1435	3	0	-18	0	0	multi-exon	FALSE	canonical	2	2	junction_1	36.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGCCTATGAGACCCGTA	NA	False	NA	NA	False	GGGGCT	-38	NA	103715496	103710200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103711362_103714709_103714893_103715387
ES_00036638	chr3	-	6625	21	FSM	ENSMUSG00000052539.16	ENSMUST00000121198.8	5912	21	-271	-442	0	76	multi-exon	FALSE	canonical	3	26	junction_1	8.46404158779953	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTCATCAAAAAGACTGAC	NA	False	NA	NA	False	TTTAAA	-36	NA	104127690	103920498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103923385_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108_103958715_103961657_103961847_103963828_103963924_103968947_103969006_103987452_103987533_103992523_103992702_103996774_103996985_104002380_104002501_104013046_104013164_104126960
ES_00036639	chr3	-	6640	22	FSM	ENSMUSG00000052539.16	ENSMUST00000064371.14	6640	22	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	11.0079336469023	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCGTGCTTTTTTCTA	NA	False	NA	NA	False	ATTAAA	-13	NA	104127690	103920574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103923385_103923917_103924009_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108_103958715_103961657_103961847_103963828_103963924_103968947_103969006_103987452_103987533_103992523_103992702_103996774_103996985_104002380_104002501_104013046_104013164_104126960
ES_00036640	chr3	-	3827	21	FSM	ENSMUSG00000052539.16	ENSMUST00000122303.2	3827	21	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	9.00152764812729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGGTTACCACAGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	104127554	103923784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103924009_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108_103958715_103961657_103961847_103963828_103963924_103968947_103969006_103987452_103987533_103992523_103992702_103996774_103996985_104002380_104002501_104013046_104013164_104126960
ES_00036642	chr3	-	7034	17	NIC	ENSMUSG00000032913.14	novel	7099	18	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	19.5220228203944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGGTCTTCTCTTGCC	NA	False	NA	-20	True	AATAAA	-16	NA	104419241	104361295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_104365281_104368716_104369005_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
ES_00036643	chr3	-	7166	18	FSM	ENSMUSG00000032913.14	ENSMUST00000198332.2	3946	18	-69	-3151	-7	3	multi-exon	FALSE	canonical	3	19	junction_3	20.1729545898912	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTCTTCTCTTGCCTAA	NA	False	NA	-17	True	AATAAA	-19	NA	104419241	104361292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104365281_104368716_104369005_104369974_104370104_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
ES_00036645	chr3	-	617	1	FSM	ENSMUSG00000106565.2	ENSMUST00000196149.2	343	1	-479	205	-479	-205	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGCTGAAATGAACCAGGT	NA	False	NA	NA	False	AATAAA	-4	NA	104542452	104541835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104541800_104542500
ES_00036646	chr3	-	439	1	FSM	ENSMUSG00000089999.2	ENSMUST00000160676.2	439	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGGCGGTTTTTATGGC	NA	False	NA	NA	False	NA	NA	NA	104660481	104660042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104660000_104660500
ES_00036649	chr3	-	3460	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725621	104702151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
ES_00036650	chr3	-	3584	21	FSM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_20	290.136325716033	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725879	104702151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725438_104725672
ES_00036656	chr3	-	4867	6	FSM	ENSMUSG00000062127.12	ENSMUST00000098763.7	4834	6	-30	-3	-27	1	multi-exon	FALSE	canonical	3	66	junction_1	8.46167832052247	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGGGGAAAAGTCTTG	1442	False	NA	-10	True	ATTAAA	-18	NA	104960297	104909229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104913445_104915263_104915372_104918508_104918740_104939968_104940077_104946180_104946304_104960215
ES_00036659	chr3	-	2461	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	-54	0	-54	0	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCCTTCTCTTTAT	NA	False	NA	-18	True	AATAAA	-12	NA	105708706	105634582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ES_00036661	chr3	-	2541	3	FSM	ENSMUSG00000000563.18	ENSMUST00000153666.2	2527	3	0	-14	0	14	multi-exon	FALSE	canonical	3	4727	junction_2	168.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTATGCTTCCATTTGTG	NA	False	NA	NA	False	AATAAA	-8	NA	105866580	105860970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_105863358_105866177_105866215_105866463
ES_00036664	chr3	-	4786	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	572	-1015	0	1015	multi-exon	FALSE	canonical	3	61	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACACAAGGTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	107240417	107231721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107233621_107237530
ES_00036665	chr3	-	5967	1	FSM	ENSMUSG00000048109.11	ENSMUST00000197769.2	5967	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAGAGACAAT	NA	False	NA	NA	False	NA	NA	NA	107240417	107234450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107234400_107240400
ES_00036667	chr3	-	3867	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	0	-4	0	2	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTCGTGTGTCTTTTTTG	NA	False	NA	0	True	ATTAAA	-27	NA	107603876	107570431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
ES_00036670	chr3	-	1291	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	86	0	-64	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	-7	True	NA	NA	NA	107839047	107833649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
ES_00036672	chr3	-	1014	8	Fusion	ENSMUSG00000068762.12_ENSMUSG00000089664.3	novel	1153	8	NA	NA	-2442	0	multi-exon	FALSE	canonical	2	3	junction_3	17.8279761805393	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	5795	False	NA	-1	True	AGTAAA	-16	NA	107862879	107846162	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_107846633_107848308_107848420_107848504_107848601_107849648_107849731_107850017_107850083_107850560_107850637_107860362_107860439_107862841
ES_00036673	chr3	-	993	6	NIC	ENSMUSG00000068762.12	novel	1153	8	NA	NA	-21	2	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	14.7837748900611	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCTGTCGTATTAC	1769	False	NA	1	True	AGTAAA	-18	NA	107851086	107846160	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_107846633_107848308_107848420_107848504_107848601_107850017_107850083_107850560_107850637_107850913
ES_00036674	chr3	-	1129	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	101	1	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTTTCTTTTGCT	NA	False	NA	1	True	AATAAA	-21	NA	107876498	107871010	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
ES_00036675	chr3	-	1211	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	101	-1	101	1	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTTTCTTTTGCT	NA	False	NA	1	True	AATAAA	-21	NA	107876498	107871010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ES_00036676	chr3	-	1007	6	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	114	-7	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	88.3388929068052	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	NA	False	NA	-7	True	AATAAA	-41	NA	107876485	107871018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420
ES_00036677	chr3	-	1067	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	0	-3	0	3	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGTGTATTATTTTTCT	2042	False	NA	-1	True	AATAAA	-16	NA	107893769	107889014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
ES_00036679	chr3	-	1492	8	NNC	ENSMUSG00000027890.18	novel	777	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	43.5819659389298	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATGTCTTTTCCTACC	NA	False	NA	-3	True	AATAAA	-21	NA	107952182	107947722	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107952125
ES_00036680	chr3	-	1701	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	7	-1	7	1	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATGTCTTTTCCTACC	NA	False	NA	-3	True	AATAAA	-21	NA	107952203	107947722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
ES_00036681	chr3	-	4293	15	FSM	ENSMUSG00000027889.18	ENSMUST00000136712.8	4288	15	0	-5	0	5	multi-exon	TRUE	canonical	3	5	junction_14	63.61539410667	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGAAGGTGTCTGTTGG	NA	False	NA	-1	True	AATAAA	-22	NA	107992871	107981372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107982438_107982564_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582_107988091_107988316_107988448_107992562
ES_00036682	chr3	-	3655	18	FSM	ENSMUSG00000027889.18	ENSMUST00000102638.8	3650	18	0	-5	0	5	multi-exon	FALSE	canonical	3	198	junction_12	21.7907634157735	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGAAGGTGTCTGTTGG	NA	False	NA	-1	True	AATAAA	-22	NA	107993943	107981372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
ES_00036683	chr3	-	3593	19	FSM	ENSMUSG00000027889.18	ENSMUST00000102637.8	3586	19	0	-7	0	5	multi-exon	FALSE	canonical	3	124	junction_18	33.5369705707258	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGAAGGTGTCTGTTGG	NA	False	NA	-1	True	AATAAA	-22	NA	107993967	107981372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
ES_00036684	chr3	-	3368	18	FSM	ENSMUSG00000027889.18	ENSMUST00000078912.7	3368	18	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_17	58.315690197265	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAAGATTATTTA	NA	False	NA	-31	True	NA	NA	NA	107992715	107981402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107992562
ES_00036689	chr3	-	3262	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	-10	True	ATTAAA	-32	NA	108053462	108014595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ES_00036690	chr3	-	4058	3	FSM	ENSMUSG00000048796.8	ENSMUST00000065664.7	4058	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.5	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATGCTCTGTCCTTTTC	NA	False	NA	0	True	ATTAAA	-16	NA	108108150	108103086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108107032_108107440_108107479_108108075
ES_00036693	chr3	-	2767	12	FSM	ENSMUSG00000048997.18	ENSMUST00000102633.9	3044	12	271	6	-177	0	multi-exon	FALSE	canonical	3	3	junction_11	14.3354153142281	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGACTGTCTCCCTGT	3205	False	NA	NA	False	AAGAAA	-22	NA	108117979	108109543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108116232_108116412_108117660
ES_00036694	chr3	-	3292	6	FSM	ENSMUSG00000027887.12	ENSMUST00000141387.4	4090	6	0	798	0	-798	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAGACCAGAGGACTTC	726	False	NA	NA	False	AATAAA	-28	NA	108133964	108119585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108121999_108123892_108124085_108124903_108125106_108126356_108126482_108133438_108133514_108133679
ES_00036696	chr3	-	3486	18	FSM	ENSMUSG00000068740.15	ENSMUST00000147251.2	3486	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	2.9529177407085	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCCTGTGCCTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	108306267	108299537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108300562_108300655_108300827_108300965_108301149_108301251_108301341_108301528_108301657_108302200_108302324_108302431_108302559_108302643_108302724_108302875_108302989_108303258_108303434_108303748_108303950_108304034_108304162_108304262_108304431_108304545_108304727_108304817_108304947_108305075_108305260_108305784_108305995_108306194
ES_00036698	chr3	-	1992	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	-126	0	-86	0	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352611	108333927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ES_00036702	chr3	-	3493	15	FSM	ENSMUSG00000027883.16	ENSMUST00000029482.16	3498	15	5	0	5	0	multi-exon	FALSE	canonical	3	65	junction_14	18.8820182248852	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTAATCAAGTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	108629620	108585953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108618592_108618897_108629356
ES_00036705	chr3	-	2421	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	0	-2	0	2	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGAGTTTTTCTTTCTTT	NA	False	NA	5	True	AATAAA	-19	NA	108747827	108700489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
ES_00036708	chr3	-	3532	7	FSM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	0	-482	0	482	multi-exon	FALSE	canonical	3	28	junction_5	171.074707527313	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGGACCAAAGTGGTTA	6881	False	NA	NA	False	AATAAA	-12	NA	108819012	108809638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108817658_108817712_108818479
ES_00036711	chr3	-	3248	3	ISM	ENSMUSG00000027881.15	ENSMUST00000199735.5	2508	7	4485	-342	-865	0	3prime_fragment	FALSE	canonical	3	86	junction_2	225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGGTGTTGGTTTCCCC	4076	False	NA	-7	True	AATAAA	-20	NA	108814299	108810120	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_108812079_108812426_108812651_108813233
ES_00036714	chr3	-	2108	5	FSM	ENSMUSG00000027881.15	ENSMUST00000145720.2	2108	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	118.495516792831	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCTCACT	6867	False	NA	NA	False	AATAAA	-30	NA	108819026	108813876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108815164_108815247_108815400_108815651_108815721_108817658_108817712_108818479
ES_00036715	chr3	-	5708	11	FSM	ENSMUSG00000040339.11	ENSMUST00000171143.2	5702	11	-6	0	-6	0	multi-exon	FALSE	canonical	1	2	junction_4	2.6153393661244	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTCTTAAGATTTTACT	NA	False	NA	NA	False	AATAAA	-22	NA	108934929	108878312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108882659_108886160_108886231_108886996_108887125_108887390_108887611_108888459_108888556_108892627_108892732_108895626_108895674_108899941_108900059_108904350_108904381_108910615_108910737_108934500
ES_00036717	chr3	-	2468	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	-18	0	18	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTGAAGGAAAAATACAAA	NA	False	NA	6	True	ATTAAA	-37	NA	110158314	110155846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_110155800_110158300
ES_00036718	chr3	-	514	1	FSM	ENSMUSG00000106666.2	ENSMUST00000199590.2	204	1	35	-345	35	345	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCTGCTTTTGGCCCCC	NA	False	NA	NA	False	NA	NA	NA	112674293	112673779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_112673800_112674300
ES_00036719	chr3	-	3888	15	FSM	ENSMUSG00000027981.15	ENSMUST00000092154.10	3888	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	23.6233195061532	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAAGATTTAGATTT	NA	False	NA	NA	False	AGTAAA	-14	NA	113423798	113398715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_113400949_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
ES_00036720	chr3	-	1839	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	-1	True	AATAAA	-16	NA	113423798	113399112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
ES_00036725	chr3	-	590	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	-152	-5	0	3	multi-exon	FALSE	canonical	3	36	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGCTATGGTGATT	934	False	NA	-2	True	NA	NA	NA	115681753	115675226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_115675488_115681424
ES_00036727	chr3	-	743	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	-4	0	4	multi-exon	FALSE	canonical	2	5	junction_2	22	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGCTATGGTGATTT	944	False	NA	-1	True	NA	NA	NA	115681743	115675225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_115675488_115679862_115680025_115681424
ES_00036737	chr3	-	1841	11	ISM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	19729	-3	2	3	3prime_fragment	FALSE	canonical	3	87	junction_7	13.8524366087703	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGAGTGTGAGGCTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	116388507	116374738	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ES_00036738	chr3	-	899	1	FSM	ENSMUSG00000033439.13	ENSMUST00000198454.2	880	1	0	-19	0	19	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGTTTCTAAACTCAAACA	NA	False	NA	NA	False	AAAAAG	-26	NA	116388487	116387588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116387600_116388500
ES_00036739	chr3	-	1009	1	FSM	ENSMUSG00000033439.13	ENSMUST00000198103.2	869	1	-192	52	-13	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAGCAAAAATATATAAAAT	NA	False	NA	NA	False	NA	NA	NA	116408249	116407240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116407200_116408200
ES_00036741	chr3	-	704	7	FSM	ENSMUSG00000105103.2	ENSMUST00000140672.3	704	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	435.187571309455	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCAGCCCTGCAATTGG	NA	False	NA	NA	False	NA	NA	NA	116474909	116435550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116471511_116471631_116474753
ES_00036742	chr3	-	5622	8	FSM	ENSMUSG00000027957.14	ENSMUST00000029569.9	5725	8	113	-10	113	10	multi-exon	FALSE	canonical	3	122	junction_1	23.3779941878019	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTCAGGATCTTTCCTT	1909	False	NA	1	True	AATAAA	-30	NA	116506186	116463108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116467368_116468819_116468954_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116488078_116488284_116505731
ES_00036743	chr3	-	384	2	FSM	ENSMUSG00000027957.14	ENSMUST00000131082.2	4424	2	0	4040	0	4	multi-exon	FALSE	canonical	3	172	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCTAGGGTGATTTTTTT	2189	False	NA	NA	False	NA	NA	NA	116505906	116488074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116488284_116505731
ES_00036744	chr3	-	9349	34	FSM	ENSMUSG00000033400.15	ENSMUST00000040603.14	9625	34	0	276	0	-276	multi-exon	TRUE	canonical	3	13	junction_28	10.2172903022423	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTCTCAGGACTGTAAA	NA	False	NA	NA	False	NA	NA	NA	116601815	116533923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116538585_116540028_116540163_116540265_116540354_116544046_116544145_116545633_116545846_116546899_116547013_116548521_116548658_116551887_116552000_116552339_116552566_116562434_116562538_116564988_116565165_116566035_116566170_116566412_116566550_116570177_116570309_116572267_116572403_116572703_116572817_116572904_116573030_116574374_116574526_116574640_116574797_116574891_116574994_116575236_116575401_116576168_116576293_116578101_116578290_116578708_116578849_116580178_116580277_116580367_116580471_116580878_116581003_116581919_116582032_116582174_116582357_116584654_116584859_116585666_116585834_116587260_116587472_116600916_116601067_116601676
ES_00036747	chr3	-	2015	9	FSM	ENSMUSG00000028007.14	ENSMUST00000029639.12	2021	9	0	6	0	-6	multi-exon	FALSE	canonical	3	21	junction_1	4.05431868505671	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCCAAAGTAGGTTTAAG	NA	False	NA	NA	False	AATAAA	-26	NA	117662585	117575301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
ES_00036748	chr3	-	1588	8	FSM	ENSMUSG00000028007.14	ENSMUST00000169812.8	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.9045976991969	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGATGTGTTCATTT	NA	False	NA	NA	False	AATAAA	-20	NA	117662529	117575519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_117576026_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
ES_00036749	chr3	-	3643	14	FSM	ENSMUSG00000028134.12	ENSMUST00000029780.12	3364	14	-214	-65	89	65	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCCCACCCTGTTTATAA	NA	False	NA	NA	False	ATTAAA	-2	NA	119577251	119512325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ES_00036750	chr3	-	3648	14	FSM	ENSMUSG00000028134.12	ENSMUST00000200097.5	3777	14	129	0	16	0	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTGTTCCTTTTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	119577324	119512390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ES_00036753	chr3	-	254	1	FSM	ENSMUSG00000105243.2	ENSMUST00000198123.2	291	1	11	26	11	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGTCCATGCTGCTGT	NA	False	NA	NA	False	ACTAAA	-34	NA	120814414	120814160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_120814200_120814400
ES_00036754	chr3	-	1483	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	1	0	-1	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTTGTGTCTGAGAAGG	NA	False	NA	NA	False	ATTAAA	-22	NA	120965344	120949047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
ES_00036755	chr3	-	473	4	FSM	ENSMUSG00000028133.18	ENSMUST00000164573.8	473	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	44.392191505564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTTTCATGTTTACTT	NA	False	NA	0	True	ATTAAA	-16	NA	120952468	120949491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_120949707_120949861_120949952_120950049_120950166_120952416
ES_00036756	chr3	-	1167	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	0	-22	0	0	multi-exon	FALSE	canonical	3	76	junction_2	14.8548533034381	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTTTCATGTTTACTT	NA	False	NA	0	True	ATTAAA	-16	NA	120965343	120949491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
ES_00036757	chr3	-	444	3	FSM	ENSMUSG00000028133.18	ENSMUST00000098650.4	2260	3	0	1816	0	-1816	multi-exon	FALSE	canonical	1	3	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCACACACTTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	120965343	120964635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_120964832_120964923_120965069_120965240
ES_00036760	chr3	-	3493	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	0	-4	0	4	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	519	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCCTGACCTTTTTTAT	7131	False	NA	3	True	ATTAAA	-26	NA	121608951	121552551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
ES_00036764	chr3	-	6514	1	FSM	ENSMUSG00000057359.8	ENSMUST00000199060.2	6844	1	215	115	42	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCACTAGGTAGCTGAAGC	NA	False	NA	NA	False	NA	NA	NA	122087154	122080640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122080600_122087200
ES_00036766	chr3	-	5269	14	FSM	ENSMUSG00000039735.17	ENSMUST00000162409.8	5198	14	-64	-7	-64	1	multi-exon	FALSE	canonical	3	68	junction_7	9.36820759854666	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTACTTATCTTTTACT	NA	False	NA	2	True	AATAAA	-25	NA	122413428	122332366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
ES_00036767	chr3	-	3997	15	NIC	ENSMUSG00000039735.17	novel	5357	15	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	12.9545910229319	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTACTTATCTTTTAC	NA	False	NA	1	True	AATAAA	-24	NA	122413357	122332367	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
ES_00036768	chr3	-	396	2	FSM	ENSMUSG00000106365.2	ENSMUST00000198040.2	396	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACAGCTCAATGGTGGAG	NA	False	NA	NA	False	AATAAA	-25	NA	122423312	122420859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122421218_122423274
ES_00036772	chr3	-	5863	16	NNC	ENSMUSG00000039701.12	novel	6185	16	NA	NA	10	-307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	13.5078577954545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGGTCTTTTCTTTGCA	NA	False	NA	NA	False	AAAACA	-28	NA	122778143	122725448	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_122728245_122729636_122729734_122741009_122741087_122742772_122743506_122744819_122744964_122746205_122746356_122746828_122746992_122750347_122750497_122751231_122751381_122752680_122752787_122754803_122754887_122754967_122755082_122756532_122756668_122757903_122757997_122762237_122762899_122777930
ES_00036773	chr3	-	1897	8	FSM	ENSMUSG00000039701.12	ENSMUST00000199923.5	1984	8	40	47	1	-47	multi-exon	FALSE	canonical	3	36	junction_5	4.92391083988974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTTGTTACTGTTATAA	NA	False	NA	NA	False	TTTAAA	-28	NA	122778119	122750864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122751381_122752680_122752787_122754803_122754887_122754967_122755082_122756532_122756668_122757903_122757997_122762237_122762899_122777930
ES_00036775	chr3	-	2621	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	124	-4	1	4	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTTCCTTAGATGCA	NA	False	NA	2	True	AATAAA	-21	NA	123179633	123161941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ES_00036776	chr3	-	4207	10	FSM	ENSMUSG00000028114.17	ENSMUST00000174323.6	4202	10	0	-5	0	5	multi-exon	TRUE	canonical	3	213	junction_1	26.0261027564896	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTCCTTAGATGCAG	NA	False	NA	3	True	AATAAA	-22	NA	123179634	123161940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ES_00036777	chr3	-	788	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	-7	-5	-4	2	mono-exon	FALSE	NA	NA	NA	NA	NA	403	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCCTGTTTCTGGAGG	NA	False	NA	50	True	AATAAA	-23	NA	123301986	123301198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_123301200_123302000
ES_00036778	chr3	-	539	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	-4	-7	-4	2	multi-exon	FALSE	canonical	3	458	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCCTGTTTCTGGAGG	NA	False	NA	50	True	AATAAA	-23	NA	123301986	123301198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_123301512_123301760
ES_00036779	chr3	-	425	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	25	-2	25	2	multi-exon	FALSE	canonical	3	427	junction_1	15.5	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCCTGTTTCTGGAGG	NA	False	NA	50	True	AATAAA	-23	NA	123302028	123301198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_123301310_123301465_123301512_123301760
ES_00036780	chr3	-	3751	6	FSM	ENSMUSG00000032854.13	ENSMUST00000057944.12	3740	6	-9	-2	-9	2	multi-exon	FALSE	canonical	3	9	junction_2	3.44093010681705	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTCATTGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	125732277	125658917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_125661229_125665233_125665454_125667797_125667875_125669137_125669281_125708286_125709111_125732101
ES_00036782	chr3	-	8118	45	NIC	ENSMUSG00000032826.20	novel	14305	46	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	6	junction_43	7.96359874420338	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCAGTGGTGGTTTTGTC	2199	False	NA	-3	True	AATAAA	-18	NA	127202644	126715258	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174_126728428_126730268_126730413_126731386_126731519_126733720_126733796_126744383_126744406_126746137_126746171_126746825_126746949_126748632_126748759_126749518_126749748_126750904_126751002_126752531_126752737_126753301_126753514_126755899_126756055_126758586_126758812_126769699_126769804_126770493_126770597_126775448_126775594_126781792_126781866_126791501_126791601_126792525_126792625_126796326_126796426_126797593_126797693_126804502_126804701_126806321_126806421_126806887_126806987_126810464_126810663_126816940_126817040_126822867_126822967_126823123_126823223_126825764_126825963_126832395_126832495_126840373_126840473_126841830_126841930_126846336_126846523_126850641_126850741_126871150_126871250_126873546_126873646_126898409_126898512_127132780_127132842_127202493
ES_00036787	chr3	-	2673	10	FSM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	0	-11	0	6	multi-exon	FALSE	canonical	3	416	junction_8	26.3288791357173	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTTCATAATGGTCC	NA	False	NA	-5	True	AATAAA	-27	NA	127631160	127600649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
ES_00036788	chr3	-	2586	9	FSM	ENSMUSG00000074238.7	ENSMUST00000200409.5	2580	9	0	-6	0	6	multi-exon	FALSE	canonical	3	8	junction_4	148.476376487979	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTTCATAATGGTCC	NA	False	NA	-5	True	AATAAA	-27	NA	127631172	127600649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
ES_00036789	chr3	-	230	2	Genic_Genomic	ENSMUSG00000105008.2	novel	675	1	NA	NA	-65216	-499	multi-exon	TRUE	non_canonical	0	0	junction_1	0	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTTGTTTGAAAAAGACG	NA	False	NA	NA	False	NA	NA	NA	127722723	127657331	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_127657371_127722532
ES_00036796	chr3	-	5128	24	FSM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_20	16.4228159792433	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGAGTGCAATTTTATT	NA	False	NA	0	True	TATAAA	-22	NA	129854556	129776407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_129777656_129777815_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805440_129805522_129814186_129814292_129827479_129827624_129834322_129835097_129854217
ES_00036798	chr3	-	1071	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	-4	0	4	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGACTTTTTGTTGTTTTG	NA	False	NA	5	True	AATAAA	-28	NA	130503093	130489556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ES_00036799	chr3	-	633	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	-9	0	9	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGATTTGTTTAGGACT	NA	False	NA	-2	True	AATAAA	-29	NA	130523986	130520470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
ES_00036800	chr3	-	497	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	0	-17	0	9	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGATTTGTTTAGGACT	NA	False	NA	-2	True	AATAAA	-29	NA	130524047	130520470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
ES_00036801	chr3	-	507	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	0	-12	0	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523970	130520512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
ES_00036802	chr3	-	477	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523991	130520512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
ES_00036803	chr3	-	711	4	FSM	ENSMUSG00000062006.13	ENSMUST00000133802.6	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	1377.49636014845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAATCTTTTGGAATCT	NA	False	NA	NA	False	NA	NA	NA	130523983	130521980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130522501_130522699_130522800_130522877_130522952_130523966
ES_00036804	chr3	-	1232	3	FSM	ENSMUSG00000062006.13	ENSMUST00000200517.2	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	8385	junction_1	618	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAAAGTCCTTATGAGAC	NA	False	NA	NA	False	NA	NA	NA	130523995	130522486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130522501_130522699_130522800_130522877
ES_00036805	chr3	-	1718	1	FSM	ENSMUSG00000105558.2	ENSMUST00000200240.2	1305	1	-108	-305	-108	305	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CGCAGAAGTCAAAAAAAAAA	6074	False	NA	NA	False	AATAAA	-4	NA	130724427	130722709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130722700_130724400
ES_00036807	chr3	-	1708	9	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	0	26924	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.907432689553	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAGAAAAAGAAAAA	NA	False	NA	NA	False	AAGAAA	-35	NA	131065673	131000143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_131000172_131027099_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ES_00036808	chr3	-	1716	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	77	-4	0	4	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGTCTTCTCTGAACTC	NA	False	NA	NA	False	TATAAA	-5	NA	131065673	131027063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ES_00036809	chr3	-	218	1	FSM	ENSMUSG00000106268.2	ENSMUST00000198141.2	1018	1	130	670	130	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAGATTTATAACAGC	NA	False	NA	NA	False	NA	NA	NA	131078663	131078445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_131078400_131078700
ES_00036811	chr3	-	1683	4	FSM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	28	5	28	-5	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAGCATGGCTATGGACA	NA	False	NA	NA	False	NA	NA	NA	131096821	131086941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_131087334_131089036_131089199_131091434_131092071_131096328
ES_00036812	chr3	-	847	6	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	0	6601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	373.524510574607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	132380537	132359640	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_132359674_132366259_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509
ES_00036814	chr3	-	1139	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	0	-13	0	-5	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTGGTTTTTTGATT	NA	False	NA	-3	True	AATAAA	-44	NA	132389645	132366246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
ES_00036817	chr3	-	3519	12	FSM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	0	-16	0	16	multi-exon	FALSE	canonical	3	158	junction_3	19.4795930515641	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCTTCCCAACCCATTA	NA	False	NA	13	True	NA	NA	NA	132797586	132687496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
ES_00036822	chr3	-	9179	11	FSM	ENSMUSG00000040943.13	ENSMUST00000098603.8	9179	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	56.8116185300155	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTCTGTTGCAGAGGT	NA	False	NA	-5	True	AATAAA	-24	NA	133250151	133169439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182397_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
ES_00036830	chr3	-	4117	25	FSM	ENSMUSG00000028163.18	ENSMUST00000029812.14	4117	25	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	10.9790678363673	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	0	True	AATAAA	-25	NA	135397307	135290415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912_135314057_135318174_135318314_135319411_135319504_135319667_135319773_135321032_135321192_135324564_135324729_135332355_135332505_135361260_135361360_135364788_135364827_135368675_135368755_135373513_135373554_135375030_135375101_135396883
ES_00036833	chr3	-	374	1	FSM	ENSMUSG00000104675.2	ENSMUST00000195951.2	427	1	46	7	46	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTTGTTGGTGTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	137624160	137623786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_137623800_137624200
ES_00036839	chr3	-	3392	14	FSM	ENSMUSG00000028149.13	ENSMUST00000029796.11	3383	14	0	-9	0	1	multi-exon	FALSE	canonical	3	34	junction_10	15.970386796752	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTACTTGGTTTCTTTGTG	NA	False	NA	-1	True	AATAAA	-26	NA	138780831	138631661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ES_00036840	chr3	-	3603	15	FSM	ENSMUSG00000028149.13	ENSMUST00000196280.5	3598	15	0	-5	0	1	multi-exon	FALSE	canonical	3	17	junction_4	20.5834538265222	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTACTTGGTTTCTTTGTG	NA	False	NA	-1	True	AATAAA	-26	NA	138780898	138631661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661220_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138689482_138689630_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ES_00036841	chr3	-	3670	15	FSM	ENSMUSG00000028149.13	ENSMUST00000098574.9	3669	15	0	-1	0	1	multi-exon	FALSE	canonical	3	58	junction_10	10.7892614791424	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTACTTGGTTTCTTTGTG	NA	False	NA	-1	True	AATAAA	-26	NA	138780962	138631661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138689482_138689630_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ES_00036842	chr3	-	3517	14	NIC	ENSMUSG00000028149.13	novel	3669	15	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	23.9889027598451	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTACTTGGTTTCTTT	NA	False	NA	-4	True	AATAAA	-23	NA	138780962	138631664	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661220_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ES_00036845	chr3	-	5021	13	FSM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	0	-5	0	5	multi-exon	FALSE	canonical	3	150	junction_4	21.3476514451174	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGGCCTTTTTTTTTCC	7003	False	NA	1	True	AATAAA	-24	NA	142101454	141945345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
ES_00036846	chr3	-	6197	22	FSM	ENSMUSG00000004591.17	ENSMUST00000043812.15	6207	22	0	10	0	-10	multi-exon	FALSE	canonical	3	374	junction_13	40.9391451479165	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTAGCCATTTTGTAGT	NA	False	NA	NA	False	AATAAA	-5	NA	142587765	142496672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_142499776_142499863_142499945_142500148_142500257_142504663_142504807_142505565_142505643_142506800_142506864_142509314_142509492_142515233_142515326_142515402_142515479_142515584_142515716_142516121_142516249_142516451_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ES_00036851	chr3	-	6249	7	NNC	ENSMUSG00000040151.10	novel	6177	7	NA	NA	-63	6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	40.4831926716371	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTAGTATGCGCCTTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	144276005	144135460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_144140479_144141222_144141381_144143355_144143454_144153030_144153170_144159712_144159799_144170807_144171047_144275494
ES_00036852	chr3	-	2193	10	NNC	ENSMUSG00000037062.14	novel	1416	10	NA	NA	-60	59189	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.469027839728	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACTATAAGAAGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	144426156	144330249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_144330276_144396458_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
ES_00036854	chr3	-	3961	9	FSM	ENSMUSG00000037062.14	ENSMUST00000163279.6	3961	9	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	25.8444868395563	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	AAAACA	-20	NA	144426096	144394604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
ES_00036856	chr3	-	2023	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	-4	0	4	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGTATGTTGTTTGGTA	NA	False	NA	NA	False	AATAAA	-20	NA	145355736	145352726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
ES_00036857	chr3	-	1006	9	NIC	ENSMUSG00000028188.14	novel	1920	15	NA	NA	-45	94	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	6.11861912526021	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGTTTATTACCCAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	146205553	146181010	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_146181137_146181948_146182058_146186882_146186965_146187521_146187616_146193266_146193321_146194401_146194520_146195565_146195673_146199426_146199599_146205409
ES_00036860	chr3	-	1978	5	FSM	ENSMUSG00000028187.11	ENSMUST00000199079.2	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_4	35.3765459026175	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	AATACA	-16	NA	146227166	146216549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
ES_00036862	chr3	-	4443	11	NNC	ENSMUSG00000005034.16	novel	4347	10	NA	NA	-45	15857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.7130372692978	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAACAAAATGACAACAAC	2623	False	NA	NA	False	NA	NA	NA	146518790	146419471	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_146419498_146435333_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
ES_00036863	chr3	-	4342	10	FSM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	0	5	0	-5	multi-exon	FALSE	canonical	3	142	junction_1	11.8415464455544	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGCTATTGAGTCTTCT	2698	False	NA	NA	False	ATTAAA	-15	NA	146518715	146435333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
ES_00036865	chr3	-	612	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	-19	-56	-19	56	mono-exon	FALSE	NA	NA	NA	NA	NA	860	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGCTAGGCAGATTTCC	NA	False	NA	NA	False	AATAAA	-34	NA	146545121	146544509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_146544500_146545100
ES_00036871	chr3	-	239	1	FSM	ENSMUSG00000105779.2	ENSMUST00000199849.2	862	1	761	-138	761	138	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTACTTTTGGTGGAGTT	4716	False	NA	NA	False	NA	NA	NA	150220957	150220718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_150220700_150221000
ES_00036872	chr3	-	1596	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	False	NA	NA	False	CATAAA	-17	NA	151871867	151799475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ES_00036874	chr3	-	2627	4	FSM	ENSMUSG00000028035.14	ENSMUST00000144950.8	2459	4	-193	25	3	-25	multi-exon	TRUE	canonical	3	8	junction_3	4.18993502999218	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATATATATGGTAT	NA	False	NA	NA	False	AAAACA	-24	NA	151915913	151889643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_151891018_151892051_151892621_151899013_151899256_151915471
ES_00036877	chr3	-	4965	16	FSM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	0	0	0	0	multi-exon	TRUE	canonical	3	131	junction_7	24.7194030852059	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTGTTCTTAATGACT	NA	False	NA	-34	True	AATAAA	-13	NA	152046044	151979485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
ES_00036878	chr3	-	1629	6	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	56	38375	46	11443	5prime_fragment	FALSE	canonical	3	188	junction_4	9.69535971483266	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAAGTCTCTTAACTGT	NA	False	NA	-4	True	NA	NA	NA	152045964	152025588	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
ES_00036879	chr3	-	2338	4	FSM	ENSMUSG00000054942.14	ENSMUST00000199397.2	2842	4	0	504	0	-504	multi-exon	FALSE	canonical	3	188	junction_2	10.6770782520313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACTTTTTAGATCTAAACA	NA	False	NA	NA	False	NA	NA	NA	152046010	152037535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_152039255_152040888_152041067_152043362_152043682_152045888
ES_00036880	chr3	-	2691	1	FSM	ENSMUSG00000104548.2	ENSMUST00000200343.2	3079	1	229	159	229	-159	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTCCTTTGGAAGAGCA	9106	False	NA	NA	False	NA	NA	NA	152099648	152096957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_152097000_152099600
ES_00036881	chr3	-	273	2	FSM	ENSMUSG00000039058.12	ENSMUST00000198552.2	385	2	108	4	108	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACGTGAGCTGCTTCAT	9793	False	NA	NA	False	AAAACA	-27	NA	152184044	152178379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_152178586_152183977
ES_00036884	chr3	-	1420	8	FSM	ENSMUSG00000038975.15	ENSMUST00000167111.6	1418	8	0	-2	0	0	multi-exon	FALSE	canonical	3	355	junction_5	235.209329261041	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6964	False	NA	0	True	AATAAA	-17	NA	153617782	153612923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
ES_00036885	chr3	-	1992	8	FSM	ENSMUSG00000038975.15	ENSMUST00000197438.5	1992	8	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_3	212.229275327704	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6798	False	NA	0	True	AATAAA	-17	NA	153617948	153612923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616526_153617561
ES_00036886	chr3	-	1403	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	0	-4	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6182	False	NA	0	True	AATAAA	-17	NA	153618564	153612923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ES_00036887	chr3	-	1510	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6071	False	NA	0	True	AATAAA	-17	NA	153618675	153612923	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ES_00036888	chr3	-	1381	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6122	False	NA	0	True	AATAAA	-17	NA	153618624	153612923	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ES_00036889	chr3	-	1781	10	FSM	ENSMUSG00000038975.15	ENSMUST00000196565.5	1775	10	0	-6	0	0	multi-exon	FALSE	canonical	3	9	junction_9	304.412366517671	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6116	False	NA	0	True	AATAAA	-17	NA	153618630	153612923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618254
ES_00036890	chr3	-	1383	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	-2	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6100	False	NA	0	True	AATAAA	-17	NA	153618646	153612923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ES_00036891	chr3	-	1271	9	FSM	ENSMUSG00000038975.15	ENSMUST00000196266.5	1271	9	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	7028	False	NA	-29	True	AATAAA	-16	NA	153617718	153613090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ES_00036893	chr3	-	2051	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	0	-4	0	4	multi-exon	TRUE	canonical	3	875	junction_11	59.2580851965116	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGACTCTCCAGGTTTG	NA	False	NA	-2	True	AATAAA	-20	NA	153650269	153627989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
ES_00036895	chr3	-	4270	5	FSM	ENSMUSG00000047583.10	ENSMUST00000170461.8	4270	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	28.314086600136	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTGTTCTGTTGCAG	NA	False	NA	2	True	AATAAA	-20	NA	154302735	154282156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_154285929_154296720_154296793_154299353_154299453_154300090_154300172_154302489
ES_00036896	chr3	-	627	3	FSM	ENSMUSG00000047583.10	ENSMUST00000148680.3	627	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	36.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATGTCAAATAGGAAAAG	NA	False	NA	-15	True	AATAAA	-21	NA	154300171	154285481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_154285929_154299353_154299453_154300090
ES_00036899	chr3	-	223	1	FSM	ENSMUSG00000103981.2	ENSMUST00000193016.2	270	1	23	24	23	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCAAACATTTCAAAATCT	NA	False	NA	NA	False	NA	NA	NA	155460854	155460631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_155460600_155460900
ES_00036903	chr3	-	1899	1	FSM	ENSMUSG00000104528.2	ENSMUST00000196744.2	2231	1	231	101	231	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTATAGGGCATCTGACT	NA	False	NA	NA	False	NA	NA	NA	157602597	157600698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157600700_157602600
ES_00036904	chr3	-	2673	13	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	0	52649	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	180.039559696072	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	157737397	157663460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_157663488_157716557_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ES_00036906	chr3	-	3081	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	6	-433	0	-13	multi-exon	FALSE	canonical	3	573	junction_1	36.7913482463625	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCAAGTTTGTATTTGA	NA	False	NA	-13	True	ATTAAA	-25	NA	157737397	157716122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ES_00036907	chr3	-	3126	13	FSM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	0	-20	0	20	multi-exon	FALSE	canonical	3	316	junction_12	95.9239788698437	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGTATGATACTTTTAT	NA	False	NA	20	True	TATAAA	-38	NA	157742276	157716089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
ES_00036908	chr3	-	2952	10	FSM	ENSMUSG00000055436.19	ENSMUST00000152274.9	2952	10	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	36.9744656636321	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCGCATGTCGTTGGTC	NA	False	NA	-4	True	NA	NA	NA	157729059	157716280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477
ES_00036909	chr3	-	2628	13	NNC	ENSMUSG00000055436.19	novel	3106	13	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	canonical	3	73	junction_1	177.599795889522	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTAGAGCTGGGTT	NA	False	NA	-23	True	AATAAA	-21	NA	157742243	157716551	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_157717838_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
ES_00036915	chr3	-	1309	5	FSM	ENSMUSG00000055436.19	ENSMUST00000089922.12	1309	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	277.517904827779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACTTTTTTTGTCTTGT	NA	False	NA	NA	False	AAGAAA	-36	NA	157742243	157729045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157729869_157730334_157730399_157732361_157732496_157737088_157737286_157742152
ES_00036916	chr3	-	2415	3	FSM	ENSMUSG00000055436.19	ENSMUST00000133090.2	2415	3	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	185	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAAAAAAATACTCTT	NA	False	NA	NA	False	NA	NA	NA	157742248	157730373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157732496_157737088_157737286_157742152
ES_00036921	chr3	+	2344	1	Intergenic	novelGene_2470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATAAAATTTTAAAACTT	NA	False	NA	NA	False	NA	NA	NA	3392254	3394598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_3392300_3394600
ES_00036922	chr3	+	717	1	Intergenic	novelGene_2472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAGCAAAGGGGGAAGT	NA	False	NA	NA	False	NA	NA	NA	4227313	4228030	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_4227300_4228000
ES_00036923	chr3	+	376	1	Intergenic	novelGene_2473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATGTAGATATGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	4278541	4278917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_4278500_4278900
ES_00036924	chr3	+	418	1	Intergenic	novelGene_2475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAGAAACGGAGCTAA	NA	False	NA	NA	False	NA	NA	NA	4458276	4458694	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_4458300_4458700
ES_00036925	chr3	+	441	1	Intergenic	novelGene_2476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGAGCCCAGAGGGGCTC	NA	False	NA	NA	False	NA	NA	NA	5925392	5925833	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_5925400_5925800
ES_00036926	chr3	+	201	1	Intergenic	novelGene_2477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTATTTTCTTGTACAA	NA	False	NA	NA	False	NA	NA	NA	6641275	6641476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_6641300_6641500
ES_00036928	chr3	+	1354	1	Intergenic	novelGene_2479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCAATCTTAGACTGGTC	901	False	NA	NA	False	NA	NA	NA	7630123	7631477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_7630100_7631500
ES_00036929	chr3	+	219	1	Intergenic	novelGene_2481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCTGAATTAACTTGCTA	NA	False	NA	NA	False	NA	NA	NA	7857577	7857796	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_7857600_7857800
ES_00036930	chr3	+	431	1	Intergenic	novelGene_2482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATTTTCTAGTGGTTAC	NA	False	NA	NA	False	NA	NA	NA	7858726	7859157	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_7858700_7859200
ES_00036931	chr3	+	264	1	Intergenic	novelGene_2484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACGGATAGAAAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	8311167	8311431	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_8311200_8311400
ES_00036932	chr3	+	407	1	Intergenic	novelGene_2487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGTAAATAAAAAGTACAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	8945740	8946147	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_8945700_8946100
ES_00036933	chr3	+	212	1	Intergenic	novelGene_2488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTCTCTCTGTATCTG	NA	False	NA	NA	False	NA	NA	NA	9278176	9278388	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_9278200_9278400
ES_00036934	chr3	+	280	1	Intergenic	novelGene_2489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGCTCTCCATTTCTAG	NA	False	NA	NA	False	AATAAA	-27	NA	10418042	10418322	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_10418000_10418300
ES_00036935	chr3	+	1704	1	Intergenic	novelGene_2491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	892	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGATTTATTTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	11078548	11080252	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_11078500_11080300
ES_00036936	chr3	+	209	1	Intergenic	novelGene_2492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	305	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGACTTCCAGCTCCTATT	NA	False	NA	NA	False	NA	NA	NA	11617763	11617972	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_11617800_11618000
ES_00036937	chr3	+	223	1	Intergenic	novelGene_2494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	406	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACTTGTTATTTACTG	NA	False	NA	NA	False	NA	NA	NA	14685568	14685791	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_14685600_14685800
ES_00036938	chr3	+	220	1	Intergenic	novelGene_2495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCACGAGGAAGACATAAA	NA	False	NA	NA	False	NA	NA	NA	15610121	15610341	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_15610100_15610300
ES_00036939	chr3	+	1452	1	Intergenic	novelGene_2496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCACAGGCATGGAACTAT	NA	False	NA	NA	False	AATAAA	-44	NA	15685327	15686779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_15685300_15686800
ES_00036940	chr3	+	547	1	Intergenic	novelGene_2497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTTAACATGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	18750682	18751229	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_18750700_18751200
ES_00036941	chr3	+	216	1	Intergenic	novelGene_2501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTAGTGTTCTTTAGAAT	1436	False	NA	NA	False	NA	NA	NA	20064089	20064305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_20064100_20064300
ES_00036942	chr3	+	471	1	Intergenic	novelGene_2502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAGAACAAGCAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	20529151	20529622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_20529200_20529600
ES_00036943	chr3	+	2216	1	Intergenic	novelGene_2503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACATACCTCAATAACA	NA	False	NA	NA	False	AATAAA	-27	NA	21106402	21108618	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_21106400_21108600
ES_00036944	chr3	+	216	1	Intergenic	novelGene_2504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGTGGTTTCTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	21526853	21527069	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_21526900_21527100
ES_00036945	chr3	+	260	1	Intergenic	novelGene_2505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAACCCAAGAAC	NA	False	NA	NA	False	NA	NA	NA	21655381	21655641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_21655400_21655600
ES_00036946	chr3	+	347	1	Intergenic	novelGene_2506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTGGTGTATGACCATGG	NA	False	NA	NA	False	NA	NA	NA	21719580	21719927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_21719600_21719900
ES_00036947	chr3	+	221	1	Intergenic	novelGene_2507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAATACCTAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	21903807	21904028	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_21903800_21904000
ES_00036951	chr3	+	361	1	Intergenic	novelGene_2510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAACCTGTTTTTAATCT	NA	False	NA	NA	False	NA	NA	NA	24410952	24411313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_24411000_24411300
ES_00036952	chr3	+	1038	1	Intergenic	novelGene_2511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCGACAACTTACTCTTG	NA	False	NA	NA	False	NA	NA	NA	25209623	25210661	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_25209600_25210700
ES_00036953	chr3	+	212	1	Intergenic	novelGene_2512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAGTTTCAAGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	25211064	25211276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_25211100_25211300
ES_00036954	chr3	+	535	1	Intergenic	novelGene_2513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTGAAAAACTTCGAATC	NA	False	NA	NA	False	NA	NA	NA	25211944	25212479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_25211900_25212500
ES_00036955	chr3	+	904	1	Intergenic	novelGene_2515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACCACAGACTGAGAGC	NA	False	NA	NA	False	NA	NA	NA	25785903	25786807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_25785900_25786800
ES_00036956	chr3	+	465	1	Intergenic	novelGene_2516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCTTCAAACGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	26289376	26289841	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_26289400_26289800
ES_00036957	chr3	+	202	1	Intergenic	novelGene_2517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCACTCTTGCACTC	NA	False	NA	NA	False	NA	NA	NA	27130530	27130732	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_27130500_27130700
ES_00036958	chr3	+	227	1	Intergenic	novelGene_2520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTTCCTGTTCTTATCA	NA	False	NA	NA	False	NA	NA	NA	29040375	29040602	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_29040400_29040600
ES_00036959	chr3	+	277	1	Intergenic	novelGene_2522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTGGAGCTAACGGGC	NA	False	NA	NA	False	NA	NA	NA	31199575	31199852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_31199600_31199900
ES_00036960	chr3	+	480	1	Intergenic	novelGene_2523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCCCCCCCCCCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32918275	32918755	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_32918300_32918800
ES_00036961	chr3	+	727	1	Intergenic	novelGene_2525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCTCTCAACTTAAAGGAA	7750	False	NA	NA	False	TATAAA	-24	NA	34707696	34708423	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_34707700_34708400
ES_00036962	chr3	+	210	1	Intergenic	novelGene_2526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAAATAAAAACAAAGTT	221	False	NA	NA	False	NA	NA	NA	34758598	34758808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_34758600_34758800
ES_00036963	chr3	+	208	1	Intergenic	novelGene_2529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGCTTTTGATAATCCC	NA	False	NA	NA	False	NA	NA	NA	35779089	35779297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_35779100_35779300
ES_00036964	chr3	+	215	1	Intergenic	novelGene_2530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTCTCCCATCTTAACT	NA	False	NA	NA	False	NA	NA	NA	36110698	36110913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_36110700_36110900
ES_00036965	chr3	+	226	1	Intergenic	novelGene_2531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATTAAGTCTTTGTTTT	NA	False	NA	NA	False	TTTAAA	-27	NA	40638601	40638827	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_40638600_40638800
ES_00036966	chr3	+	235	1	Intergenic	novelGene_2533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATGGATGTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48538513	48538748	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_48538500_48538700
ES_00036967	chr3	+	461	1	Intergenic	novelGene_2535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAGACCATCCCGTGAG	6151	False	NA	NA	False	NA	NA	NA	49331835	49332296	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_49331800_49332300
ES_00036968	chr3	+	211	1	Intergenic	novelGene_2537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	368	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	51243598	51243809	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_51243600_51243800
ES_00036969	chr3	+	204	1	Intergenic	novelGene_2540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCAGCCCCGAATCTTG	NA	False	NA	NA	False	NA	NA	NA	51304802	51305006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_51304800_51305000
ES_00036970	chr3	+	212	1	Intergenic	novelGene_2542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGAGCATTTCTGAAGC	NA	False	NA	NA	False	NA	NA	NA	52382912	52383124	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_52382900_52383100
ES_00036971	chr3	+	3989	1	Intergenic	novelGene_2543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTACGAAGTTTGGATGT	NA	False	NA	NA	False	NA	NA	NA	53020951	53024940	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_53021000_53024900
ES_00036972	chr3	+	241	1	Intergenic	novelGene_2545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCATATGAATCAAGGCAAA	NA	False	NA	NA	False	NA	NA	NA	54529732	54529973	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_54529700_54530000
ES_00036974	chr3	+	602	1	Intergenic	novelGene_2549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGCTAACCGGATCCAAGA	NA	False	NA	NA	False	NA	NA	NA	59675733	59676335	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_59675700_59676300
ES_00036975	chr3	+	592	1	Intergenic	novelGene_2550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTTGCCAAAACCTAGAC	NA	False	NA	NA	False	TATAAA	-14	NA	63078143	63078735	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_63078100_63078700
ES_00036976	chr3	+	296	1	Intergenic	novelGene_2551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGGCAAAACTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	63079457	63079753	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_63079500_63079800
ES_00036977	chr3	+	213	1	Intergenic	novelGene_2552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	394	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTATTAATGAAATTCACT	NA	False	NA	NA	False	CATAAA	-6	NA	64138323	64138536	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_64138300_64138500
ES_00036978	chr3	+	233	1	Intergenic	novelGene_2554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGAGATACTTCTAAGCA	5697	False	NA	NA	False	NA	NA	NA	69349861	69350094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_69349900_69350100
ES_00036979	chr3	+	445	1	Intergenic	novelGene_2557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACTAGTCCTCTGACATA	NA	False	NA	NA	False	NA	NA	NA	69871481	69871926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_69871500_69871900
ES_00036980	chr3	+	490	1	Intergenic	novelGene_2559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTTTTTATTAAAGGTT	NA	False	NA	2	True	NA	NA	NA	69872137	69872627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_69872100_69872600
ES_00036981	chr3	+	211	1	Intergenic	novelGene_2563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGTTCCTAATCTTCC	NA	False	NA	NA	False	NA	NA	NA	73469039	73469250	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_73469000_73469200
ES_00036982	chr3	+	213	1	Intergenic	novelGene_2564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTTCGAAAAGGATGAGA	NA	False	NA	NA	False	NA	NA	NA	74764844	74765057	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_74764800_74765100
ES_00036983	chr3	+	205	1	Intergenic	novelGene_2565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGGGAATTTTCTTAAAC	NA	False	NA	NA	False	NA	NA	NA	76176391	76176596	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_76176400_76176600
ES_00036984	chr3	+	268	1	Intergenic	novelGene_2567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCACCACAGCGTTCCT	NA	False	NA	NA	False	NA	NA	NA	78466435	78466703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_78466400_78466700
ES_00036986	chr3	+	204	1	Intergenic	novelGene_2569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	83250845	83251049	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_83250800_83251000
ES_00036987	chr3	+	233	1	Intergenic	novelGene_2574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	489	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCAAATACTTTTTTAAAA	1635	False	NA	NA	False	NA	NA	NA	87798595	87798828	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_87798600_87798800
ES_00036988	chr3	+	209	1	Intergenic	novelGene_2578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTATCTCACGCAGGAGA	648	False	NA	NA	False	NA	NA	NA	88340927	88341136	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88340900_88341100
ES_00036989	chr3	+	224	1	Intergenic	novelGene_2580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGTGATAGGATAGGT	3505	False	NA	NA	False	NA	NA	NA	88590399	88590623	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88590400_88590600
ES_00036992	chr3	+	282	1	Intergenic	novelGene_2585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAGAATCCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	88940932	88941214	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88940900_88941200
ES_00036996	chr3	+	296	1	Intergenic	novelGene_2593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATATATTGGATCTG	NA	False	NA	22	True	AATAAA	-18	NA	89753558	89753854	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89753600_89753900
ES_00036998	chr3	+	784	1	Intergenic	novelGene_2599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTTATTAAAGCATTAA	NA	False	NA	NA	False	NA	NA	NA	91186077	91186861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_91186100_91186900
ES_00037001	chr3	+	204	1	Intergenic	novelGene_2602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	509	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAATGCCATCTTACCA	NA	False	NA	NA	False	NA	NA	NA	93364275	93364479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93364300_93364500
ES_00037003	chr3	+	507	1	Intergenic	novelGene_2605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGCCTTAGAAATAAGA	NA	False	NA	NA	False	NA	NA	NA	93605078	93605585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93605100_93605600
ES_00037005	chr3	+	293	1	Intergenic	novelGene_2608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCAAGAGTCAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	93621294	93621587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93621300_93621600
ES_00037007	chr3	+	233	1	Intergenic	novelGene_2610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCCCTTCCCTTTAGCA	7819	False	NA	NA	False	NA	NA	NA	93828745	93828978	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93828700_93829000
ES_00037009	chr3	+	1504	1	Intergenic	novelGene_2613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACAGACGTTTAGATGAT	NA	False	NA	NA	False	NA	NA	NA	94020723	94022227	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_94020700_94022200
ES_00037012	chr3	+	220	1	Intergenic	novelGene_2615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTTGGTGGCGCATGCC	NA	False	NA	NA	False	NA	NA	NA	94879596	94879816	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_94879600_94879800
ES_00037015	chr3	+	203	1	Intergenic	novelGene_2620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCCCTAGATCTATTC	NA	False	NA	NA	False	NA	NA	NA	95083438	95083641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95083400_95083600
ES_00037016	chr3	+	208	1	Intergenic	novelGene_2621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTTATTCTTAAAATTG	9397	False	NA	NA	False	NA	NA	NA	95120447	95120655	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95120400_95120700
ES_00037017	chr3	+	2420	1	Intergenic	novelGene_2622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	633	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACCTTATTAAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	95303995	95306415	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95304000_95306400
ES_00037018	chr3	+	203	1	Intergenic	novelGene_2630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATACTCTGCCAGTTGTA	9065	False	NA	NA	False	NA	NA	NA	96230226	96230429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96230200_96230400
ES_00037019	chr3	+	208	1	Intergenic	novelGene_2635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCGACGTAAGGTACGCG	NA	False	NA	NA	False	NA	NA	NA	96365260	96365468	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96365300_96365500
ES_00037020	chr3	+	338	1	Intergenic	novelGene_2638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	396	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTTTATAATGCTTTT	786	False	NA	NA	False	NA	NA	NA	96561118	96561456	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96561100_96561500
ES_00037021	chr3	+	213	1	Intergenic	novelGene_2639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTCTTTAATAAAACATTA	NA	False	NA	NA	False	NA	NA	NA	96993269	96993482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96993300_96993500
ES_00037022	chr3	+	234	1	Intergenic	novelGene_2640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	860	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTTCTTAATATCTCT	NA	False	NA	NA	False	NA	NA	NA	98993243	98993477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_98993200_98993500
ES_00037023	chr3	+	388	1	Intergenic	novelGene_2643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGACAACAGTACCACAC	NA	False	NA	NA	False	NA	NA	NA	100220038	100220426	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_100220000_100220400
ES_00037024	chr3	+	233	1	Intergenic	novelGene_2646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAAGCTTTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	103188802	103189035	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_103188800_103189000
ES_00037025	chr3	+	223	1	Intergenic	novelGene_2648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGAAACTCATCAGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	103723042	103723265	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_103723000_103723300
ES_00037026	chr3	+	234	1	Intergenic	novelGene_2652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTGAGATGTAAAATCC	9	False	NA	NA	False	NA	NA	NA	104782380	104782614	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_104782400_104782600
ES_00037028	chr3	+	207	1	Intergenic	novelGene_2654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	107510463	107510670	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_107510500_107510700
ES_00037029	chr3	+	207	1	Intergenic	novelGene_2655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCATCTTTCTTGAGCTG	NA	False	NA	NA	False	NA	NA	NA	108233385	108233592	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_108233400_108233600
ES_00037030	chr3	+	225	1	Intergenic	novelGene_2657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGCCTCAAGGGAGAATG	NA	False	NA	NA	False	NA	NA	NA	112959806	112960031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_112959800_112960000
ES_00037031	chr3	+	207	1	Intergenic	novelGene_2658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAATAATTTTAAAAAAG	6496	False	NA	NA	False	NA	NA	NA	115087526	115087733	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_115087500_115087700
ES_00037034	chr3	+	208	1	Intergenic	novelGene_2664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGATAAGGGCTTACTT	NA	False	NA	NA	False	NA	NA	NA	121358097	121358305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_121358100_121358300
ES_00037036	chr3	+	218	1	Intergenic	novelGene_2665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGATCTTTACCTATACTA	NA	False	NA	NA	False	NA	NA	NA	122721812	122722030	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_122721800_122722000
ES_00037037	chr3	+	319	1	Intergenic	novelGene_2666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCAAAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	124557728	124558047	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_124557700_124558000
ES_00037038	chr3	+	1859	1	Intergenic	novelGene_2667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTTAAAATGCTGAACAA	NA	False	NA	NA	False	NA	NA	NA	125824468	125826327	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_125824500_125826300
ES_00037039	chr3	+	611	1	Intergenic	novelGene_2668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGCTATTAAAGAGTAA	NA	False	NA	NA	False	NA	NA	NA	125826676	125827287	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_125826700_125827300
ES_00037040	chr3	+	207	1	Intergenic	novelGene_2669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGCACCTTGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	127251490	127251697	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_127251500_127251700
ES_00037041	chr3	+	565	1	Intergenic	novelGene_2671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTTTGTAAAGGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	129461828	129462393	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_129461800_129462400
ES_00037042	chr3	+	2472	1	Intergenic	novelGene_2673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAGGCTAGAAAGGT	1042	False	NA	NA	False	NA	NA	NA	129462989	129465461	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_129463000_129465500
ES_00037043	chr3	+	201	1	Intergenic	novelGene_2674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTCTTTCTGAGTGT	8403	False	NA	NA	False	NA	NA	NA	129483127	129483328	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_129483100_129483300
ES_00037044	chr3	+	201	1	Intergenic	novelGene_2675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCTAGAAGAAATTTTTC	4729	False	NA	NA	False	NA	NA	NA	129841518	129841719	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_129841500_129841700
ES_00037048	chr3	+	212	1	Intergenic	novelGene_2677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGCTGGTGCTCTATT	NA	False	NA	NA	False	NA	NA	NA	137486473	137486685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_137486500_137486700
ES_00037049	chr3	+	207	1	Intergenic	novelGene_2678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGTTTTTGAGACAG	NA	False	NA	NA	False	NA	NA	NA	137581020	137581227	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_137581000_137581200
ES_00037050	chr3	+	235	1	Intergenic	novelGene_2679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAGCAATGGTCTGGAT	318	False	NA	NA	False	NA	NA	NA	138283113	138283348	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_138283100_138283300
ES_00037053	chr3	+	238	1	Intergenic	novelGene_2680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAAATATCAATGTAATG	NA	False	NA	NA	False	NA	NA	NA	142108999	142109237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_142109000_142109200
ES_00037055	chr3	+	236	1	Intergenic	novelGene_2681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCAATGTTGGTAGCTC	NA	False	NA	NA	False	NA	NA	NA	157659126	157659362	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_157659100_157659400
ES_00037057	chr3	+	4372	2	Intergenic	novelGene_2471	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATACGCTAAATGTCTCA	NA	False	NA	NA	False	NA	NA	NA	4221027	4225442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_4221130_4221172
ES_00037058	chr3	+	773	1	FSM	ENSMUSG00000091223.3	ENSMUST00000170943.3	1327	1	-208	762	-208	-762	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTCCGAACCCACTATGA	NA	False	NA	NA	False	NA	NA	NA	4276569	4277342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_4276600_4277300
ES_00037059	chr3	+	3691	3	FSM	ENSMUSG00000027499.13	ENSMUST00000028999.12	3617	3	-80	6	-79	-6	multi-exon	FALSE	canonical	2	5	junction_2	0.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAATGCAGTCTCTCAAG	2594	False	NA	15	True	ATTAAA	-16	NA	7431649	7510420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_7431813_7502397_7502576_7507070
ES_00037060	chr3	+	915	6	NIC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_5	694.848357557244	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574575	8626666	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325_8625397_8626398
ES_00037061	chr3	+	6058	6	NNC	ENSMUSG00000027536.7	novel	6188	5	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	75.5407174972544	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTATCCTATTTCTTT	NA	False	NA	1	True	ATTAAA	-16	NA	10432002	10460397	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971_10455735_10455828
ES_00037062	chr3	+	3359	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTTTTCTCTCTGAAA	NA	False	NA	NA	False	AATAAA	-27	NA	14598847	14637718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
ES_00037066	chr3	+	3613	1	FSM	ENSMUSG00000104918.2	ENSMUST00000198383.2	3980	1	-2	369	-2	-369	mono-exon	FALSE	NA	NA	NA	NA	NA	382	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGGCCACAGCAGTGGC	NA	False	NA	NA	False	NA	NA	NA	18676323	18679936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_18676300_18679900
ES_00037067	chr3	+	5938	1	FSM	ENSMUSG00000048106.7	ENSMUST00000198527.3	6148	1	-2	212	-2	-212	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTCACCTGGCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	19949047	19954985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_19949000_19955000
ES_00037068	chr3	+	820	1	FSM	ENSMUSG00000104031.2	ENSMUST00000194477.2	1147	1	-205	532	-205	-532	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTGAATGCGACAAATGC	2563	False	NA	NA	False	NA	NA	NA	19988200	19989020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_19988200_19989000
ES_00037069	chr3	+	700	1	NIC	ENSMUSG00000105440.2	novel	909	4	NA	NA	8767	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCACCCTGACCATTGC	NA	False	NA	NA	False	NA	NA	NA	21765745	21766445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_21765700_21766400
ES_00037070	chr3	+	8264	17	NNC	ENSMUSG00000027630.14	novel	8237	17	NA	NA	-57	13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	76.6481408776495	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAATGTTTCTTGGTTGTTG	NA	False	NA	24	True	ATTAAA	-36	NA	22130758	22270771	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_22131119_22197167_22197235_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ES_00037071	chr3	+	1319	13	FSM	ENSMUSG00000027692.17	ENSMUST00000161423.2	1340	13	21	0	21	0	multi-exon	FALSE	canonical	1	1	junction_12	5.31441958783418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAATTGGAAGAACAGAG	NA	False	NA	NA	False	AATATA	-6	NA	28463600	28650232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28463699_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28650220
ES_00037072	chr3	+	5333	19	ISM	ENSMUSG00000027692.17	ENSMUST00000159680.9	4380	32	331341	-2362	-34968	0	3prime_fragment	FALSE	canonical	3	5	junction_1	4.72450925010429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCCTTTTATATTTTT	NA	False	NA	11	True	AATAAA	-21	NA	28649052	28724734	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_28649143_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ES_00037074	chr3	+	1908	1	FSM	ENSMUSG00000039221.11	ENSMUST00000195728.2	1908	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859656	28861564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28859700_28861600
ES_00037075	chr3	+	553	3	FSM	ENSMUSG00000039221.11	ENSMUST00000194092.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	3771	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28860606	28861564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28860742_28860818_28861008_28861335
ES_00037076	chr3	+	3756	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	-282	0	-269	0	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8510	False	NA	NA	False	AATAAA	-35	NA	30656510	30672650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
ES_00037077	chr3	+	2050	5	NNC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	-152	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	105.580241996313	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30909946	30951339	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_30910035_30910111_30910395_30931383_30931482_30944090_30944191_30949858
ES_00037078	chr3	+	1922	3	FSM	ENSMUSG00000037661.15	ENSMUST00000108259.8	1916	3	-6	0	-6	0	multi-exon	FALSE	canonical	3	8	junction_2	143	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910092	30951339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_30910207_30931383_30931711_30949858
ES_00037079	chr3	+	1171	1	FSM	ENSMUSG00000103039.2	ENSMUST00000192994.2	1171	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTAGGGCATTTATGT	NA	False	NA	NA	False	NA	NA	NA	32508735	32509906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32508700_32509900
ES_00037080	chr3	+	1805	7	NNC	ENSMUSG00000027667.14	novel	2211	7	NA	NA	32	0	intron_retention	FALSE	canonical	2	13	junction_1	81.390007576688	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3214	False	NA	22	True	AATAAA	-22	NA	32564715	32574892	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_32564739_32567157_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ES_00037085	chr3	+	1495	1	FSM	ENSMUSG00000027671.15	ENSMUST00000194226.2	1457	1	-43	5	0	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32762655	32764150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32762700_32764200
ES_00037086	chr3	+	877	5	FSM	ENSMUSG00000027673.13	ENSMUST00000122290.2	625	5	84	-336	84	0	multi-exon	FALSE	canonical	3	2854	junction_2	53.4836423591363	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	False	NA	10	True	AATAAA	-24	NA	32798988	32805715	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ES_00037088	chr3	+	860	1	FSM	ENSMUSG00000103423.2	ENSMUST00000195812.2	796	1	-14	-50	-14	50	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGGAAGCAAATTCA	NA	False	NA	NA	False	ATTAAA	-3	NA	33675742	33676602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33675700_33676600
ES_00037090	chr3	+	3873	11	NIC	ENSMUSG00000027677.18	novel	2438	12	NA	NA	0	246	intron_retention	FALSE	canonical	3	90	junction_10	31.6291005246751	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTATCGTCATAAAATCTT	NA	False	NA	47	True	NA	NA	NA	33854361	33864339	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33862098_33862834
ES_00037091	chr3	+	9207	9	FSM	ENSMUSG00000027677.18	ENSMUST00000196975.5	1711	9	-50	-7446	0	83	multi-exon	FALSE	canonical	3	18	junction_5	55.9741848980403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTGTGAATTAGTTTT	NA	False	NA	NA	False	AATACA	-2	NA	33854361	33869092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33858148_33858221_33858569_33858690_33858788_33858912_33860964
ES_00037095	chr3	+	956	2	FSM	ENSMUSG00000027710.15	ENSMUST00000199193.2	860	2	-333	237	270	0	multi-exon	FALSE	canonical	3	197	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAGAAAGAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	36143652	36145284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_36144304_36144979
ES_00037098	chr3	+	15704	86	NIC	ENSMUSG00000037270.19	novel	15883	86	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_36	23.8104510216558	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCATAGTTGTTTCATA	NA	False	NA	3	True	AATAAA	-17	NA	36917252	37107163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_36917429_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146_36985285_36991140_36991318_36992594_36992724_36994901_36995022_36996331_36996613_36997267_36997519_37000396_37000656_37001889_37002728_37003290_37003362_37004031_37004209_37006266_37006388_37007985_37008133_37010787_37010916_37011118_37011319_37012836_37013035_37013485_37013698_37019023_37019176_37019669_37019821_37019990_37020144_37021258_37021500_37023294_37023438_37027379_37027600_37028316_37028476_37029735_37029912_37037517_37037694_37041119_37041827_37042218_37042465_37043943_37044038_37048923_37049131_37050463_37050703_37052338_37052584_37054164_37054271_37056718_37056817_37057897_37058084_37058987_37059157_37061133_37061346_37062542_37062742_37065093_37065154_37065716_37065944_37067028_37067160_37068553_37068678_37075595_37075706_37076532_37076624_37077118_37077182_37080238_37080493_37082188_37082405_37084049_37084231_37084695_37084793_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ES_00037099	chr3	+	5236	27	FSM	ENSMUSG00000037270.19	ENSMUST00000141740.8	5236	27	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	11.340872303989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCATAGTTGTTTCATATC	2016	False	NA	5	True	AATAAA	-19	NA	37065725	37107165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37065944_37067028_37067160_37068553_37068678_37075595_37075706_37076532_37076624_37077118_37077182_37080238_37080493_37082188_37082405_37084049_37084231_37084695_37084898_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ES_00037100	chr3	+	356	1	FSM	ENSMUSG00000037270.19	ENSMUST00000196036.2	2750	1	2273	121	2273	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCTCGTACTCCATGTT	NA	False	NA	NA	False	TATAAA	-42	NA	37099402	37099758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37099400_37099800
ES_00037103	chr3	+	2994	1	FSM	ENSMUSG00000106062.2	ENSMUST00000199414.2	3346	1	55	297	55	-297	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGGTCTGTAGGTTTG	NA	False	NA	NA	False	NA	NA	NA	37698810	37701804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_37698800_37701800
ES_00037108	chr3	+	1215	1	FSM	ENSMUSG00000104616.2	ENSMUST00000196501.2	463	1	-270	-482	-270	482	mono-exon	FALSE	NA	NA	NA	NA	NA	416	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATACTTTTGCATATTCAA	NA	False	NA	NA	False	GATAAA	-43	NA	41439897	41441112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_41439900_41441100
ES_00037109	chr3	+	3437	6	FSM	ENSMUSG00000025766.15	ENSMUST00000108065.9	3452	6	15	0	11	0	multi-exon	FALSE	canonical	3	14	junction_1	11.0199818511647	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCATATTTTGTGC	NA	False	NA	3	True	ATTAAA	-13	NA	41697063	41713365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_41697125_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
ES_00037114	chr3	+	1120	4	Intergenic	novelGene_2541	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	11.5181016954473	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCCAGAGACTGGCCG	NA	False	NA	NA	False	AAAACA	-25	NA	51509180	51533505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_51509432_51532025_51532159_51532710_51533027_51533085
ES_00037115	chr3	+	624	5	FSM	ENSMUSG00000074604.10	ENSMUST00000099106.10	603	5	-21	0	-20	0	multi-exon	FALSE	canonical	1	1	junction_1	6.68954408012983	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTGGCTTTGTGG	8604	False	NA	NA	False	AATAAA	-15	NA	51568578	51590096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589217_51589300_51589874
ES_00037116	chr3	+	2104	4	FSM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	4	0	4	0	multi-exon	FALSE	canonical	0	0	junction_2	2.16024689946929	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGAGTCACCGAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	52948952	53169100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_52949196_52950539_52951113_53139150_53139250_53167911
ES_00037118	chr3	+	305	1	FSM	ENSMUSG00000049504.13	ENSMUST00000198186.2	940	1	520	115	395	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGGAAGGGATGCCGAG	NA	False	NA	NA	False	NA	NA	NA	53371747	53372052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_53371700_53372100
ES_00037119	chr3	+	2682	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	7	-83	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	148.278928147409	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTTTGCATTGCTGTGT	NA	False	NA	NA	False	AATGAA	-30	NA	54600289	54635974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_54600390_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629974_54630062_54633390_54633497_54634989_54635118_54635764
ES_00037120	chr3	+	2876	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	9	-83	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	119.346079476414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTTTGCATTGCTGTGT	NA	False	NA	NA	False	AATGAA	-30	NA	54600291	54635974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ES_00037122	chr3	+	3981	9	FSM	ENSMUSG00000036580.16	ENSMUST00000118118.8	3981	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	69.2431178890726	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTCAGATGTATTCAC	NA	False	NA	16	True	AATAAA	-17	NA	55019586	55044738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_55019913_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ES_00037124	chr3	+	2586	1	FSM	ENSMUSG00000036503.14	ENSMUST00000197783.2	3873	1	-853	2140	-853	26	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTATTGGATATCAAAA	NA	False	NA	NA	False	AAAAAG	-2	NA	57707372	57709958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_57707400_57710000
ES_00037125	chr3	+	2139	3	FSM	ENSMUSG00000027810.15	ENSMUST00000138827.8	2258	3	95	24	95	-24	multi-exon	FALSE	canonical	3	790	junction_1	12.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACCCTGTCTCGAAA	NA	False	NA	NA	False	NA	NA	NA	58450795	58453220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_58452490_58452648_58452794_58452920
ES_00037126	chr3	+	3026	2	FSM	ENSMUSG00000027763.14	ENSMUST00000195839.6	3026	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAGAAAAAAAACCCAATA	NA	False	NA	NA	False	NA	NA	NA	60408685	60439043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_60408845_60436176
ES_00037131	chr3	+	6644	25	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-53	-1726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	126.082947785266	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATCTATCACATAC	NA	False	NA	NA	False	AATAAA	-4	NA	63148904	63291725	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_63148988_63150636_63150786_63197270_63197448_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ES_00037135	chr3	+	2052	2	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	1	22465	1	-14544	5prime_fragment	FALSE	canonical	3	135	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCGAAAAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	65435831	65440474	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_65436054_65438644
ES_00037136	chr3	+	3062	9	FSM	ENSMUSG00000034544.18	ENSMUST00000046542.13	3062	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	112.554153632818	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893035	67265723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_66893140_66901849_66902046_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ES_00037138	chr3	+	2788	2	Genic_Genomic	ENSMUSG00000046999.3	novel	2578	1	NA	NA	-233	0	multi-exon	FALSE	non_canonical	2	11	junction_1	0	72	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTGCATTTTTATT	NA	False	NA	NA	False	ATTAAA	-44	NA	68776685	68779496	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_68777915_68777937
ES_00037144	chr3	+	2224	8	FSM	ENSMUSG00000028015.4	ENSMUST00000029649.3	3468	8	96	1148	54	-1148	multi-exon	FALSE	canonical	0	0	junction_2	0.494871659305393	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTAGTCTATGATTTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	81840003	81862884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_81840083_81848838_81848945_81849499_81849640_81852168_81852337_81853620_81853743_81858679_81858844_81859505_81859599_81861532
ES_00037145	chr3	+	1759	15	FSM	ENSMUSG00000027998.12	ENSMUST00000029628.11	1749	15	-10	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	194.977719815598	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTGTTTTATTTCTG	NA	False	NA	24	True	AATAAA	-16	NA	82962828	82979596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977929_82978044_82978496_82978691_82979417
ES_00037147	chr3	+	1988	12	FSM	ENSMUSG00000028085.13	ENSMUST00000107674.2	1980	12	-8	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	12.872547507733	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAACATGGCTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	85481425	85560140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587
ES_00037148	chr3	+	473	1	FSM	ENSMUSG00000044330.9	ENSMUST00000054148.9	288	1	-76	-109	-76	109	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAATGCCAAGC	NA	False	NA	NA	False	AATAAA	-33	NA	85823013	85823486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_85823000_85823500
ES_00037149	chr3	+	10055	57	NNC	ENSMUSG00000028080.17	novel	6372	39	NA	NA	-438	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_21	6.58846297612388	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGTGGAAACTGACATT	NA	False	NA	11	True	AATAAA	-19	NA	86131548	86689996	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_86131791_86132375_86132812_86192303_86192536_86192940_86193042_86198733_86198830_86202395_86202518_86202608_86202736_86203552_86203673_86205171_86205319_86211542_86211741_86211906_86212041_86217267_86217377_86217693_86217847_86222642_86222812_86225401_86225482_86226867_86226931_86227811_86227910_86231035_86231129_86232312_86232422_86233007_86233090_86234905_86235030_86235470_86235664_86255425_86256476_86257553_86257733_86258509_86258664_86259135_86259317_86260975_86261104_86261505_86261614_86263893_86264054_86267037_86267489_86275810_86275945_86279384_86279464_86280742_86280877_86283211_86283274_86302527_86302593_86325194_86325304_86352613_86352781_86439391_86439517_86447209_86447357_86449881_86450019_86513176_86513295_86515654_86515758_86522278_86522395_86526816_86526930_86548797_86548939_86549959_86550080_86571744_86571898_86622819_86622988_86644388_86644479_86648711_86648890_86653107_86653171_86658833_86658990_86664688_86664857_86680406_86680509_86683304_86683502_86687418_86687571_86688877
ES_00037150	chr3	+	754	1	FSM	ENSMUSG00000104074.2	ENSMUST00000195159.2	829	1	68	7	68	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTACTATATAAGGATTT	NA	False	NA	NA	False	NA	NA	NA	86771866	86772620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_86771900_86772600
ES_00037152	chr3	+	2360	11	FSM	ENSMUSG00000041977.19	ENSMUST00000136072.8	2408	11	-6	54	-6	-54	multi-exon	TRUE	canonical	3	40	junction_7	20.5922315449298	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCAGCTTCTGGGTGAGG	6146	False	NA	NA	False	NA	NA	NA	87524859	87606398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071
ES_00037153	chr3	+	6828	41	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	3	35	junction_21	20.6488347128839	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTCCATTGTGGTTGTA	6146	False	NA	8	True	AAGAAA	-9	NA	87524859	87645337	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ES_00037156	chr3	+	2405	2	FSM	ENSMUSG00000004897.17	ENSMUST00000160312.2	582	2	-471	-1352	-471	-3	multi-exon	FALSE	canonical	3	2809	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGACTAATTCTTTT	NA	False	NA	22	True	AATAAA	-18	NA	87820796	87823436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_87821545_87821779
ES_00037158	chr3	+	203	2	Intergenic	novelGene_2575	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	417	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATTAGAAAAATGAAGTTT	6746	False	NA	NA	False	NA	NA	NA	87864754	87926180	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_87864811_87926033
ES_00037159	chr3	+	3640	11	NNC	ENSMUSG00000001419.18	novel	3488	10	NA	NA	-392	23	intron_retention	FALSE	canonical	1	2	junction_1	46.6249932975867	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCCTTCCTCTCCAGA	6146	False	NA	45	True	NA	NA	NA	88049286	88077260	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88049366_88049672_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075344
ES_00037160	chr3	+	3296	12	NNC	ENSMUSG00000001419.18	novel	1791	12	NA	NA	-363	-1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	49.5236816212437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGATGAGATTCTTCTGC	6175	False	NA	21	True	NA	NA	NA	88049315	88077236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88049366_88049676_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075344_88075652_88075938
ES_00037166	chr3	+	2435	2	FSM	ENSMUSG00000001418.14	ENSMUST00000152801.2	2430	2	-5	0	0	0	multi-exon	FALSE	canonical	3	949	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATCTTCAGCTGGGATGC	4027	False	NA	NA	False	NA	NA	NA	88232361	88234894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88233620_88233717
ES_00037168	chr3	+	861	4	FSM	ENSMUSG00000001418.14	ENSMUST00000140039.2	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_2	30.8652987457868	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTGCTGCGCCACAGG	5016	False	NA	NA	False	NA	NA	NA	88233350	88235625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88233620_88233717_88233937_88235163_88235421_88235509
ES_00037169	chr3	+	3610	12	FSM	ENSMUSG00000001415.11	ENSMUST00000192057.6	3119	12	0	-491	0	491	multi-exon	FALSE	canonical	3	253	junction_5	17.1507655902172	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTGCCAAGAACCTGAT	NA	False	NA	NA	False	NA	NA	NA	88243617	88260527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285
ES_00037172	chr3	+	1247	3	FSM	ENSMUSG00000041423.17	ENSMUST00000147818.2	1284	3	-11	48	-11	-48	multi-exon	FALSE	canonical	1	1	junction_2	2.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCTATCCATCACAAAGC	NA	False	NA	NA	False	NA	NA	NA	88274017	88275800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88274309_88274525_88274677_88274995
ES_00037174	chr3	+	590	4	FSM	ENSMUSG00000008604.12	ENSMUST00000192962.2	590	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	670.337228564847	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATCCCCAGATGCAGCA	6143	False	NA	NA	False	NA	NA	NA	88461102	88464145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88461220_88462708_88462797_88463096_88463300_88463963
ES_00037176	chr3	+	3609	22	NIC	ENSMUSG00000028059.17	novel	4300	22	NA	NA	1	-132	intron_retention	FALSE	canonical	3	121	junction_4	61.0003159725656	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCATAATGTATGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	88528445	88554707	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00037183	chr3	+	1564	4	ISM	ENSMUSG00000028060.15	ENSMUST00000198042.5	2567	14	22953	-292	0	0	3prime_fragment	FALSE	canonical	3	104	junction_1	127.478974301211	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	629	False	NA	13	True	AATAAA	-14	NA	88616086	88620161	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_88616249_88617164_88617250_88618067_88618160_88618936
ES_00037185	chr3	+	1016	6	FSM	ENSMUSG00000028057.15	ENSMUST00000172333.8	993	6	-23	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	24.0881713710277	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGCATGAACTCATCAGG	2255	False	NA	NA	False	NA	NA	NA	88624182	88636855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88624265_88624632_88624778_88624879_88624966_88633301_88633376_88633586_88633779_88636418
ES_00037187	chr3	+	1227	8	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	-12	-22145	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	54.2387014473418	73	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	88682510	88710749	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88702770_88702795_88706921_88707026_88710587
ES_00037188	chr3	+	5862	12	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	32689	732	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	113.21025564617	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTGACAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	88715211	88733626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
ES_00037189	chr3	+	8561	22	Fusion	ENSMUSG00000078684.9_ENSMUSG00000054199.19	novel	6190	19	NA	NA	-27323	-752	multi-exon	FALSE	canonical	0	0	junction_1	105.089358370058	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGGGGACCTGCTGTCAG	NA	False	NA	NA	False	NA	NA	NA	88715211	88816654	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88729107_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ES_00037190	chr3	+	11268	27	FSM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	4.23426429062243	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGGAGTCTTTGTGCC	NA	False	NA	2	True	ATTAAA	-18	NA	88873118	88986680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88873636_88888539_88893098_88909079_88909182_88914448_88915185_88930337_88930518_88933718_88933814_88940565_88940640_88942523_88942570_88942679_88942789_88950425_88950633_88950803_88950951_88959295_88959405_88960049_88960215_88960383_88960479_88961669_88961825_88965794_88965948_88970957_88971013_88971092_88971226_88973478_88973728_88974461_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ES_00037191	chr3	+	4200	21	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2112	13	NA	NA	-5	0	multi-exon	FALSE	canonical	3	250	junction_3	305.228156466601	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACCCATTTCCTGTAT	NA	False	NA	16	True	ATTAAA	-20	NA	89072096	89090070	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ES_00037192	chr3	+	1844	12	ISM	ENSMUSG00000068917.13	ENSMUST00000121212.9	2154	13	18	950	-4	0	5prime_fragment	FALSE	canonical	3	173	junction_3	109.540211115552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTACACTTTAATGTGG	NA	False	NA	5	True	AATAAA	-19	NA	89072119	89083278	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
ES_00037193	chr3	+	1812	11	NIC	ENSMUSG00000068917.13	novel	1885	12	NA	NA	45	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	200.616150895186	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072191	89084228	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ES_00037194	chr3	+	1503	10	NIC	ENSMUSG00000068917.13	novel	1885	12	NA	NA	59	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	211.442196519843	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACACTTTACACTTTAATG	NA	False	NA	2	True	AATAAA	-16	NA	89072205	89083275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
ES_00037195	chr3	+	1704	12	NIC	ENSMUSG00000068917.13	novel	2112	13	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	115	junction_2	136.051460852135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTACACTTTAATGTGG	NA	False	NA	5	True	AATAAA	-19	NA	89072259	89083278	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89072414_89074341_89074512_89076004_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
ES_00037197	chr3	+	1338	8	FSM	ENSMUSG00000028049.16	ENSMUST00000098941.5	1338	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	394.282971004949	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACCCATTTCCTGTAT	NA	False	NA	16	True	ATTAAA	-20	NA	89084826	89090070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89089232_89089351_89089605
ES_00037198	chr3	+	1475	10	NNC	ENSMUSG00000028049.16	novel	1489	9	NA	NA	0	33809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	354.654448411095	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACATAAAAAAAAGGGATG	NA	False	NA	NA	False	NA	NA	NA	89084826	89123881	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605_89090071_89123846
ES_00037199	chr3	+	1478	10	NNC	ENSMUSG00000028049.16	novel	1489	9	NA	NA	0	33809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	354.654448411095	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACATAAAAAAAAGGGATG	NA	False	NA	NA	False	NA	NA	NA	89084826	89123881	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605_89090067_89123839
ES_00037204	chr3	+	582	5	FSM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	789.56613877496	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCTTTGTAGCTGTG	7591	False	NA	7	True	AATAAA	-1	NA	89153740	89157016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89153901_89154087_89154240_89154371_89154436_89156380_89156448_89156877
ES_00037207	chr3	+	765	3	FSM	ENSMUSG00000042737.10	ENSMUST00000107462.8	827	3	62	0	62	0	multi-exon	FALSE	canonical	1	1	junction_1	269	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	1900	False	NA	17	True	ATTAAA	-18	NA	89166726	89174384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89166899_89173669_89173914_89174035
ES_00037208	chr3	+	945	2	FSM	ENSMUSG00000074466.13	ENSMUST00000145400.8	923	2	-22	0	-22	0	multi-exon	FALSE	canonical	3	16	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTAGGGTTGTTT	5235	False	NA	NA	False	NA	NA	NA	89299134	89305531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_89299814_89305265
ES_00037213	chr3	+	754	4	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-734	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	161.470327511486	53	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421007	90431888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_90421081_90422067_90422327_90423156_90423350_90431659
ES_00037220	chr3	+	532	1	Intergenic	novelGene_2611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACAAAAAAATCAATAGTT	NA	False	NA	NA	False	NA	NA	NA	94016280	94016812	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_94016300_94016800
ES_00037222	chr3	+	1189	6	FSM	ENSMUSG00000041912.13	ENSMUST00000196386.5	1050	6	-60	-79	-15	-1	multi-exon	FALSE	canonical	2	5	junction_4	15.7175061635108	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTATGTGTATGTATG	NA	False	NA	NA	False	ATTAAA	-25	NA	94320564	94333694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331898_94332869_94333010_94333097
ES_00037225	chr3	+	680	4	FSM	ENSMUSG00000005774.13	ENSMUST00000142708.2	680	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.08248290463863	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATGACCTTCCAATG	NA	False	NA	NA	False	NA	NA	NA	94862781	94864113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94863140_94863582_94863703_94863797_94863918_94864031
ES_00037228	chr3	+	398	4	FSM	ENSMUSG00000008958.15	ENSMUST00000139296.8	770	4	372	0	372	0	multi-exon	FALSE	canonical	2	159	junction_1	349.797401680204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGTTCAAGAGAGGCAAGG	6572	False	NA	NA	False	NA	NA	NA	95022344	95026494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95022422_95025535_95025689_95025959_95026075_95026441
ES_00037229	chr3	+	3847	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.8459637241572	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067748	95081335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95068010_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ES_00037230	chr3	+	4006	20	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	-19	0	combination_of_known_junctions	TRUE	canonical	3	19	junction_2	26.8983929948681	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067748	95081335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ES_00037232	chr3	+	3947	19	FSM	ENSMUSG00000038777.20	ENSMUST00000142449.9	3936	19	-11	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	29.9223790068921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067804	95081335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95075038_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ES_00037235	chr3	+	2331	10	NIC	ENSMUSG00000038712.17	novel	1812	9	NA	NA	483	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	57.7119282875444	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTTGCGTTCCTACCT	NA	False	NA	10	True	AATAAA	-11	NA	95193992	95203472	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95194184_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ES_00037236	chr3	+	811	2	FSM	ENSMUSG00000015714.12	ENSMUST00000133748.2	811	2	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCTGGCAGTTGCTGAG	4481	False	NA	NA	False	NA	NA	NA	95222557	95228084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95222657_95227372
ES_00037237	chr3	+	644	5	FSM	ENSMUSG00000015714.12	ENSMUST00000154055.8	624	5	-20	0	0	0	multi-exon	FALSE	canonical	3	427	junction_4	26.2011450131478	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTTTGCAGAAACCCTG	4481	False	NA	NA	False	NA	NA	NA	95222557	95228634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500
ES_00037238	chr3	+	879	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-327	-2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACATCCAGTGTCTTCCT	NA	False	NA	6	True	AGTAAA	-20	NA	95334654	95338396	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
ES_00037239	chr3	+	4317	22	NIC	ENSMUSG00000015522.19	novel	2699	22	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	83.8073051654387	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATAAATTGTGTTGTG	NA	False	NA	NA	False	TTTAAA	-15	NA	95341740	95404541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401011_95401172_95401757_95401925_95402614
ES_00037244	chr3	+	621	2	Genic_Genomic	ENSMUSG00000060438.6	novel	495	1	NA	NA	-46	59943	multi-exon	FALSE	non_canonical	0	0	junction_1	0	228	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTGTTTCTTCCATTT	60	False	NA	NA	False	NA	NA	NA	95529542	95590026	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_95530128_95589990
ES_00037245	chr3	+	1742	1	FSM	ENSMUSG00000106383.2	ENSMUST00000200640.2	1742	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	1083	False	NA	NA	False	NA	NA	NA	95546614	95548356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95546600_95548400
ES_00037246	chr3	+	468	2	Intergenic	novelGene_2626	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATAATGATACATTTTT	8127	False	NA	NA	False	NA	NA	NA	95727283	95781512	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95727616_95781376
ES_00037247	chr3	+	2679	4	FSM	ENSMUSG00000015750.16	ENSMUST00000197232.2	2679	4	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	11.0453610171873	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTTTTTCCTAGAGGA	NA	False	NA	NA	False	ATTAAA	-12	NA	95801776	95805144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95802304_95802454_95802883_95803029_95803158_95803548
ES_00037248	chr3	+	8013	13	NNC	ENSMUSG00000038495.15	novel	8101	13	NA	NA	-2	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.28626204439	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTCCTGTCTTCTCCG	NA	False	NA	20	True	AATAAA	-30	NA	96011855	96068454	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_96012132_96037541_96037655_96043784_96043936_96047727_96047917_96048932_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ES_00037249	chr3	+	396	3	FSM	ENSMUSG00000038486.10	ENSMUST00000133665.2	740	3	344	0	344	0	multi-exon	FALSE	canonical	0	0	junction_1	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGAGAGTCCCCGCTTC	7618	False	NA	NA	False	GGGGCT	-11	NA	96094330	96095745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96094470_96095411_96095564_96095640
ES_00037250	chr3	+	284	1	FSM	ENSMUSG00002076697.1	ENSMUST00020181968.1	138	1	-146	0	-146	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGGATGATGCGCGTCTT	NA	False	NA	NA	False	NA	NA	NA	96147037	96147321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96147000_96147300
ES_00037251	chr3	+	285	2	Intergenic	novelGene_2634	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGGTGTAGAGAGGGTAG	NA	False	NA	NA	False	NA	NA	NA	96322715	96362129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96322740_96361868
ES_00037253	chr3	+	5855	10	Fusion	ENSMUSG00000038374.11_ENSMUSG00000028102.16	novel	2604	6	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	1969.05586199435	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	8675	False	NA	9	True	ATTAAA	-16	NA	96537288	96552042	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004_96539844_96539981_96543060_96543989_96544106_96544446_96544649_96550890
ES_00037254	chr3	+	2232	4	FSM	ENSMUSG00000028102.16	ENSMUST00000144962.8	2235	4	0	3	0	-3	multi-exon	FALSE	canonical	3	9	junction_1	127.753234357839	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGCCTCAGAAAGGGTCA	NA	False	NA	0	True	AATAAA	-16	NA	96542691	96552679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96542817_96543989_96544106_96544446_96544649_96550890
ES_00037255	chr3	+	1141	5	FSM	ENSMUSG00000028102.16	ENSMUST00000048766.15	1122	5	-19	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	117.48829728956	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542968	96552042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890_96551332_96551751
ES_00037257	chr3	+	3404	14	NIC	ENSMUSG00000038354.14	novel	3295	14	NA	NA	-90	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	34.4249462320121	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	377	False	NA	16	True	AATAAA	-16	NA	96577552	96598348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_96577766_96585448_96585580_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
ES_00037260	chr3	+	3285	13	ISM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	108	0	0	intron_retention	FALSE	canonical	3	105	junction_1	23.8449854966056	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3287	False	NA	5	True	AATAAA	-15	NA	96604398	96613278	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
ES_00037262	chr3	+	216	1	FSM	ENSMUSG00000105976.2	ENSMUST00000197286.2	522	1	-140	446	-140	-446	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTCCTAAAGCCATCTT	NA	False	NA	NA	False	NA	NA	NA	96691500	96691716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96691500_96691700
ES_00037264	chr3	+	636	1	FSM	ENSMUSG00000105004.2	ENSMUST00000198613.2	3905	1	-191	3460	-191	-3460	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTCAAAACTTGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	97517056	97517692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_97517100_97517700
ES_00037266	chr3	+	3437	7	FSM	ENSMUSG00000004233.15	ENSMUST00000135960.8	3457	7	20	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_5	18.9597526941208	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAAAAAAAGAAAAAGTG	NA	False	NA	NA	False	ACTAAA	-19	NA	99048407	99126519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99112715_99112767_99121971_99122091_99123774
ES_00037271	chr3	+	2725	20	NNC	ENSMUSG00000068823.11	novel	2584	14	NA	NA	-4445	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4722.66925908939	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	32	True	AATAAA	-28	NA	102923296	102964448	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_102923325_102936427_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00037272	chr3	+	3102	20	NNC	ENSMUSG00000068823.11	novel	2584	14	NA	NA	-4445	-204	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4722.66925908939	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCACAATCCACTTAACG	NA	False	NA	NA	False	NA	NA	NA	102923296	102964814	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_102923325_102936416_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00037273	chr3	+	3008	19	NNC	ENSMUSG00000068823.11	novel	2584	14	NA	NA	-4445	-204	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4739.08897486937	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCACAATCCACTTAACG	NA	False	NA	NA	False	NA	NA	NA	102923296	102964814	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_102923324_102936416_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00037276	chr3	+	460	1	FSM	ENSMUSG00000068823.11	ENSMUST00000196521.2	1803	1	1334	9	264	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTCTTTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102937744	102938204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102937700_102938200
ES_00037278	chr3	+	225	2	Genic_Genomic	ENSMUSG00000104671.2	novel	1319	1	NA	NA	-8	14339	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTTTTAAAGACAGGGTT	NA	False	NA	NA	False	NA	NA	NA	102978481	102994147	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_102978511_102993951
ES_00037279	chr3	+	527	1	FSM	ENSMUSG00000104671.2	ENSMUST00000196302.2	1319	1	199	593	199	-593	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCCTGAGCTTCGAATTT	NA	False	NA	NA	False	NA	NA	NA	102978688	102979215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102978700_102979200
ES_00037281	chr3	+	420	2	ISM	ENSMUSG00000070385.13	ENSMUST00000177250.2	751	6	4448	-14	4448	0	3prime_fragment	FALSE	canonical	3	22	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCGAGTGGGTTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	103006213	103007036	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_103006453_103006855
ES_00037282	chr3	+	5049	19	NNC	ENSMUSG00000007379.16	novel	3578	14	NA	NA	-519	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	62.5397651276548	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	NA	False	NA	NA	False	GATAAA	-9	NA	103009400	103077047	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_103009573_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ES_00037283	chr3	+	566	1	FSM	ENSMUSG00000104925.2	ENSMUST00000198850.2	2241	1	312	1363	312	-1363	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCTTTAAATGATGTTT	NA	False	NA	NA	False	NA	NA	NA	103239770	103240336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103239800_103240300
ES_00037284	chr3	+	563	4	FSM	ENSMUSG00000032952.12	ENSMUST00000199686.2	563	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	31.961782734315	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGATATGGCTGTACGGG	NA	False	NA	NA	False	NA	NA	NA	103722373	103728000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103722638_103725075_103725160_103727569_103727778_103727993
ES_00037285	chr3	+	11219	24	Fusion	ENSMUSG00000044098.15_ENSMUSG00000058388.15	novel	3327	19	NA	NA	-32	0	intron_retention	FALSE	canonical	3	28	junction_8	17.9285496415501	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGTTTCTAGGCTTT	NA	False	NA	6	True	AATAAA	-16	NA	103821850	103914804	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_103822470_103835666_103836341_103860952_103861091_103861420_103861564_103867318_103867487_103868788_103868898_103869475_103876104_103876370_103876447_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ES_00037287	chr3	+	3006	18	FSM	ENSMUSG00000058388.15	ENSMUST00000090685.11	3006	18	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_6	21.1329618398503	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTTTCTAGGCTTTTT	NA	False	NA	8	True	AATAAA	-18	NA	103875761	103914806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103890261_103890421_103893068_103893226_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ES_00037290	chr3	+	2428	14	FSM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_11	18.8082821993382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	80	False	NA	29	True	AATACA	-40	NA	104771818	104834176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826762_104826818_104829502_104829596_104833745
ES_00037291	chr3	+	1867	14	NIC	ENSMUSG00000045576.17	novel	5728	14	NA	NA	-16	-20	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	24.9842553971792	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATACAATTTTTCTTT	674	False	NA	9	True	AATACA	-20	NA	104772412	104834156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_104772625_104778161_104778328_104780837_104780893_104782142_104782259_104788239_104788280_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ES_00037295	chr3	+	1738	8	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	6	-381	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	42.6375325701836	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTCAGTAGTGTAAATTA	NA	False	NA	9	True	AATAAA	-18	NA	106455152	106481780	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_106455237_106459471_106459597_106462479_106462625_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ES_00037297	chr3	+	2740	1	FSM	ENSMUSG00000102780.2	ENSMUST00000194058.2	4678	1	1918	20	1918	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGGGTCTTCAAACTCC	NA	False	NA	NA	False	AATAAA	-41	NA	106634832	106637572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_106634800_106637600
ES_00037298	chr3	+	3765	1	Genic_Genomic	ENSMUSG00000027896.16	novel	NA	NA	NA	NA	14201	1563	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCAATCTTGAATAGTAT	1	True	NA	NA	False	NA	NA	NA	107212831	107216596	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_107212800_107216600
ES_00037299	chr3	+	752	6	FSM	ENSMUSG00000009108.16	ENSMUST00000151326.8	808	6	56	0	2	0	multi-exon	FALSE	canonical	2	4	junction_1	1.01980390271856	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGTGGAGGATGACGAA	NA	False	NA	NA	False	NA	NA	NA	108000509	108005733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108000683_108002456_108002500_108002754_108002897_108003665_108003824_108005282_108005412_108005626
ES_00037300	chr3	+	1346	3	FSM	ENSMUSG00000050947.10	ENSMUST00000106659.3	1360	3	14	0	6	0	multi-exon	FALSE	canonical	1	1	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTGTGGTTGGTTTATT	565	False	NA	19	True	ATTAAA	-26	NA	108093679	108099093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_108093995_108094441_108095369_108098989
ES_00037301	chr3	+	698	1	NIC	ENSMUSG00000105961.2	novel	1027	3	NA	NA	12507	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTTTGTTGCTATTTTTAA	398	False	NA	NA	False	NA	NA	NA	108146609	108147307	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_108146600_108147300
ES_00037304	chr3	+	428	1	FSM	ENSMUSG00000027966.21	ENSMUST00000196345.2	2519	1	-58	2149	36	-2149	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAGGAGGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113824224	113824652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_113824200_113824700
ES_00037305	chr3	+	772	1	FSM	ENSMUSG00000052769.9	ENSMUST00000064809.7	1579	1	187	620	187	-620	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACAGAAGAAACAAACAAC	NA	False	NA	NA	False	NA	NA	NA	115508985	115509757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_115509000_115509800
ES_00037306	chr3	+	1520	10	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-2	-1817	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	113.301411626437	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATCTGCCACTATTTG	7720	False	NA	NA	False	NA	NA	NA	115681793	115726193	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722410_115722484_115722916_115726146
ES_00037307	chr3	+	407	3	FSM	ENSMUSG00000033554.18	ENSMUST00000196804.5	659	3	252	0	204	0	multi-exon	FALSE	canonical	3	288	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTGTAGGCTGCTGTGGT	7974	False	NA	NA	False	NA	NA	NA	115682047	115693426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_115682247_115686360_115686486_115693343
ES_00037308	chr3	+	6807	18	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	1708	-463	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	86.7537181477356	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTAGCACTGTTCCTAT	NA	False	NA	17	True	AATAAA	-25	NA	116654923	116701363	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698134_116698203
ES_00037310	chr3	+	243	2	Intergenic	novelGene_2662	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCTTTCTTAGAATGGG	NA	False	NA	NA	False	NA	NA	NA	118241765	118291029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_118241789_118290809
ES_00037312	chr3	+	1324	1	FSM	ENSMUSG00000106022.2	ENSMUST00000198374.2	1286	1	-69	31	-69	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTTGATTAAACACCAG	NA	False	NA	NA	False	NA	NA	NA	121221625	121222949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_121221600_121222900
ES_00037313	chr3	+	1727	6	NNC	ENSMUSG00000028128.14	novel	1130	3	NA	NA	1034	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	28.5264789274807	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCGCATTTATATCTTCC	NA	False	NA	NA	False	AATAAA	-19	NA	121518252	121528694	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_121518377_121518625_121518732_121522985_121523204_121525172_121525352_121526029_121526190_121527754
ES_00037316	chr3	+	492	1	FSM	ENSMUSG00000093392.2	ENSMUST00000175860.2	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCTTTTGACTTGCGG	5895	False	NA	NA	False	NA	NA	NA	122050376	122050868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_122050400_122050900
ES_00037317	chr3	+	766	4	FSM	ENSMUSG00000028121.9	ENSMUST00000197590.2	766	4	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	59.3127305053477	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTCGCTTCCTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	122213471	122265250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122265195
ES_00037319	chr3	+	227	2	Antisense	novelGene_ENSMUSG00000032826.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1827	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGACAAAAAGGCCACCAA	NA	False	NA	NA	False	NA	NA	NA	127233291	127236550	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_+_127233352_127236383
ES_00037320	chr3	+	927	5	ISM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-128	3398	3	-3398	5prime_fragment	FALSE	canonical	3	63	junction_3	5.7227615711298	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTATAGCTGACAATTGT	NA	False	NA	NA	False	AATAAA	-22	NA	127347153	127355089	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544
ES_00037321	chr3	+	7498	26	NNC	ENSMUSG00000051278.13	novel	7046	26	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	canonical	1	10	junction_6	22.5920339943087	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAATTCTTATGTGGAA	NA	False	NA	NA	False	ATTAAA	-15	NA	127347154	127411665	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123_127357342_127361276_127361351_127366788_127366975_127375094_127375219_127377232_127377820_127378304_127378444_127379667_127379853_127381589_127381787_127383617_127383758_127389527_127389672_127392349_127392465_127394628_127394889_127396046_127396207_127400017_127400096_127402133_127402282_127405432_127405561_127406991_127407116_127408775_127408953_127409085_127409221_127409907_127410170_127410315
ES_00037322	chr3	+	956	1	Intergenic	novelGene_2670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTATTATGTTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	127391016	127391972	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_127391000_127392000
ES_00037323	chr3	+	3300	11	ISM	ENSMUSG00000051278.13	ENSMUST00000196141.5	6932	26	44841	2	4113	0	3prime_fragment	FALSE	canonical	1	18	junction_7	17.688696955966	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCTTATGTGGAAAAAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	127391991	127411670	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_127392465_127394628_127394889_127396046_127396207_127400017_127400096_127402133_127402282_127405432_127405561_127406991_127407116_127408775_127408953_127409085_127409221_127409907_127410170_127410315
ES_00037324	chr3	+	6114	5	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	-6	0	intron_retention	TRUE	non_canonical	0	0	junction_4	162.810280695047	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCTAGTTCTTTGTTG	NA	False	NA	17	True	AATAAA	-25	NA	129325997	129432144	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708_129428653_129428678
ES_00037325	chr3	+	5929	6	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	160.505451620809	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCTAGTTCTTTGTTG	NA	False	NA	17	True	AATAAA	-25	NA	129326034	129432144	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708_129428657_129428678
ES_00037326	chr3	+	3360	10	FSM	ENSMUSG00000027985.15	ENSMUST00000106341.9	3357	10	-3	0	-3	0	multi-exon	FALSE	canonical	3	22	junction_9	8.71779788708135	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGTGGTGAACTGAACC	NA	False	NA	NA	False	AATAAA	-17	NA	130904116	131018005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_131016724
ES_00037328	chr3	+	287	1	FSM	ENSMUSG00000106628.2	ENSMUST00000200155.2	210	1	3	-80	3	80	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTGTGGTCTGCTGGC	NA	False	NA	NA	False	NA	NA	NA	134063055	134063342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_134063100_134063300
ES_00037329	chr3	+	1462	4	NIC	ENSMUSG00000050150.17	novel	1407	4	NA	NA	0	13	combination_of_known_splicesites	FALSE	canonical	3	46	junction_1	42.1030481873542	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGTTTTTTCTTTCAT	NA	False	NA	NA	False	AAGAAA	-7	NA	135053789	135064080	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_135053884_135054090_135054535_135060771_135060833_135063217
ES_00037331	chr3	+	2070	11	FSM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	0	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_10	39.2898205646195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAACAGATTTCTTCATG	NA	False	NA	NA	False	TTTAAA	-18	NA	135053818	135098842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135098457
ES_00037332	chr3	+	1675	6	FSM	ENSMUSG00000050150.17	ENSMUST00000162767.2	1545	6	0	-130	0	130	multi-exon	FALSE	canonical	3	60	junction_4	32.6521055982612	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTCCTATCTCTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	135054090	135080592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
ES_00037333	chr3	+	1955	11	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	36.6087421253449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCTATGTCTCATGATT	NA	False	NA	4	True	ATTAAA	-16	NA	135054090	135103585	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720_135099830_135103356
ES_00037334	chr3	+	738	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	False	NA	-4	True	AATAAA	-3	NA	135144076	135171047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ES_00037336	chr3	+	4113	13	NNC	ENSMUSG00000028161.18	novel	441	2	NA	NA	50691	-3	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	59.1629106789042	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCGATGTGAGTATTGC	NA	False	NA	10	True	AATAAA	-19	NA	136427221	136643485	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_136427358_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
ES_00037337	chr3	+	379	4	FSM	ENSMUSG00000037894.14	ENSMUST00000173666.8	361	4	-18	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	7077.14110515131	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATACGTGGAGATGAAGAA	NA	False	NA	NA	False	NA	NA	NA	137570333	137571844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_137570448_137570893_137570972_137571280_137571395_137571771
ES_00037340	chr3	+	214	2	NNC	ENSMUSG00000074212.8	novel	9477	8	NA	NA	8823	-1876	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCAGCTCAACTG	NA	False	NA	NA	False	NA	NA	NA	137619813	137620442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_137619870_137620284
ES_00037343	chr3	+	3142	9	NIC	ENSMUSG00000028152.11	novel	3000	8	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	77.3886296557834	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGATCACGTCGTCTTA	4849	False	NA	19	True	AATAAA	-32	NA	138447979	138610187	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_138448422_138484083_138484140_138574106_138574158_138596495_138596643_138600108_138600280_138602613_138602676_138603873_138603922_138604027_138604145_138608139
ES_00037358	chr3	+	3472	14	NNC	ENSMUSG00000036825.13	novel	3446	14	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.8542851003394	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTGTGTTGTCCATTCA	NA	False	NA	21	True	ATTAAA	-23	NA	146110421	146145898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_146110592_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ES_00037359	chr3	+	3498	14	NIC	ENSMUSG00000036825.13	novel	3446	14	NA	NA	47	-3	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	45.0928037135147	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTTGTGTTGTCCATT	NA	False	NA	19	True	ATTAAA	-21	NA	146110492	146145896	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_146110691_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ES_00037363	chr3	+	5099	3	FSM	ENSMUSG00000028034.16	ENSMUST00000198539.2	5099	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	480.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAACAAAGAAAAATATTCA	NA	False	NA	NA	False	ATTAAA	-19	NA	151930364	151941056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_151931846_151933807_151933883_151937513
ES_00037367	chr3	+	7539	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106101.2	7539	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	63.1683202752023	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTTCCATTTATTTC	NA	False	NA	13	True	AATAAA	-15	NA	152102330	152168463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ES_00037368	chr3	+	4620	14	NNC	ENSMUSG00000039068.17	novel	4197	14	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	72.3213571376039	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAAGCTTGTTGTGGATT	NA	False	NA	18	True	AATAAA	-27	NA	152102334	152165112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_152102838_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154652_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ES_00037370	chr3	+	2221	9	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	57.5769865050265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTTGTCTGTCTCGTG	NA	False	NA	16	True	AGTAAA	-16	NA	154302874	154328817	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_154303165_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ES_00037376	chr3	+	2920	12	FSM	ENSMUSG00000028175.16	ENSMUST00000029825.14	2920	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.9260800544746	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGGACTTTGGTTTA	NA	False	NA	NA	False	TATAAA	-21	NA	159201087	159235213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234641
ES_00037377	chr3	+	2089	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	-36	-3	29	3	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTATTTCCGTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	159545337	159644303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
ES_00037378	chr3	-	1783	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	0	-6	0	1	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGCATTTATTTTTGG	NA	False	NA	2	True	AATAAA	-22	NA	5641188	5625557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
ES_00037379	chr3	-	267	1	FSM	ENSMUSG00000081657.2	ENSMUST00000122299.2	333	1	99	-33	99	33	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCGTGACCTAGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	8947531	8947264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8947300_8947500
ES_00037380	chr3	-	697	7	FSM	ENSMUSG00000027506.16	ENSMUST00000063496.14	697	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1367.6783247533	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTATTTAGCTTTACT	NA	False	NA	NA	False	NA	NA	NA	9069499	8996015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8996235_9000051_9000101_9008610_9008638_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ES_00037381	chr3	-	8202	9	FSM	ENSMUSG00000027508.16	ENSMUST00000161949.8	8256	9	55	-1	6	1	multi-exon	FALSE	canonical	1	2	junction_6	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTAAAATTTGTTTGATA	NA	False	NA	NA	False	AATAAA	-21	NA	9898684	9752537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_9759190_9761178_9761239_9764284_9764872_9767017_9767115_9769763_9769816_9771142_9771350_9817472_9817547_9852321_9852381_9898270
ES_00037382	chr3	-	565	4	FSM	ENSMUSG00000027528.13	ENSMUST00000029038.8	583	4	21	-3	21	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTTCCAGCTGTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	10262261	10258682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10258863_10259026_10259129_10259735_10259909_10262151
ES_00037383	chr3	-	1634	9	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	40417	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.425400260888	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATAATCTGTTTTAGTC	NA	False	NA	NA	False	NA	NA	NA	10416374	10364595	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_10364627_10405016_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
ES_00037384	chr3	-	2973	8	FSM	ENSMUSG00000027531.17	ENSMUST00000118410.8	2988	8	15	0	15	0	multi-exon	FALSE	canonical	3	306	junction_7	40.7390901885125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGAATACCATTTTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	10396484	10379013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ES_00037385	chr3	-	4319	8	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	210	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	290.013722405809	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGCTTTTATCAGAC	NA	False	NA	NA	False	CATAAA	-9	NA	10416374	10404802	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_10405963_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10416118_10416301
ES_00037388	chr3	-	6982	27	NNC	ENSMUSG00000039286.13	novel	6886	27	NA	NA	0	2913	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.2370740359746	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATGCACAGGTCAGCA	NA	False	NA	NA	False	NA	NA	NA	27765456	27467397	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_27467412_27470311_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27514093_27514200_27515824_27515944_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27765268
ES_00037389	chr3	-	1863	1	FSM	ENSMUSG00000070522.5	ENSMUST00000094335.5	648	1	-28	-1187	-28	1187	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	ATTAAA	-20	NA	28819537	28817674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_28817700_28819500
ES_00037390	chr3	-	4508	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	0	2960	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_8	17.8815547422477	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTCTTGCTTTTTTTCT	NA	False	NA	-3	True	AATAAA	-12	NA	30753959	30730246	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749762_30753847
ES_00037392	chr3	-	9891	7	NNC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	-1455	0	intron_retention	FALSE	non_canonical	0	0	junction_1	54.1994772422515	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCGGTTCTGAGTCGGG	NA	False	NA	0	True	AATAAA	-26	NA	32421618	32388940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_32394661_32394695_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419314
ES_00037394	chr3	-	751	1	FSM	ENSMUSG00000044434.6	ENSMUST00000060997.6	447	1	-53	-251	-53	251	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAATTGGAG	NA	False	NA	NA	False	ATTAAA	-22	NA	34059665	34058914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34058900_34059700
ES_00037395	chr3	-	4624	7	FSM	ENSMUSG00000027708.15	ENSMUST00000178098.8	4434	7	-10	-180	-10	180	multi-exon	FALSE	canonical	1	4	junction_6	71.2618411213182	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGGCTTCTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	35986493	35946073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986341
ES_00037400	chr3	-	1803	4	FSM	ENSMUSG00000045031.19	ENSMUST00000071400.13	1808	4	0	5	0	-5	multi-exon	TRUE	canonical	2	5	junction_2	8.9566858950296	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGAAATCTCAGTATCTT	NA	False	NA	NA	False	TATAAA	-21	NA	37366595	37361902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_37363331_37363493_37363632_37364441_37364589_37366505
ES_00037401	chr3	-	1185	1	FSM	ENSMUSG00000104605.2	ENSMUST00000195887.2	2078	1	-73	966	-73	-966	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCGAAATATGAAAGTTTC	NA	False	NA	NA	False	GATAAA	-24	NA	37694878	37693693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_37693700_37694900
ES_00037402	chr3	-	4936	4	FSM	ENSMUSG00000044864.17	ENSMUST00000120875.8	4945	4	0	9	0	-9	multi-exon	FALSE	canonical	1	1	junction_1	18.4451137763426	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGTAAGCCTGAGTCCC	NA	False	NA	NA	False	AATAAA	-13	NA	38538993	38503416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_38506655_38517048_38517279_38536839_38538134_38538819
ES_00037403	chr3	-	242	1	FSM	ENSMUSG00000107333.2	ENSMUST00000202346.2	286	1	44	0	44	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTCTTTCTATGCTGC	NA	False	NA	NA	False	NA	NA	NA	39271951	39271709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_39271700_39272000
ES_00037405	chr3	-	784	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	305	2	NA	NA	4	0	multi-exon	FALSE	canonical	3	25	junction_3	23.3666428910958	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447621	41432011	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447574
ES_00037406	chr3	-	1240	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-30	0	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447657	41432011	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
ES_00037408	chr3	-	791	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	14068	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	30.7123753558724	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAAACCCTAACTAAGGA	NA	False	NA	31	True	NA	NA	NA	41482909	41461613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477364_41477565_41482833
ES_00037409	chr3	-	588	4	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	11	94	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	47.0767694539698	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACAGCCCTCTTGCCTA	NA	False	NA	92	True	NA	NA	NA	41482868	41476544	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41476891_41477378_41477565_41477658_41477680_41482833
ES_00037410	chr3	-	586	3	NIC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	-13	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	9.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTTGATGTCAATGGAC	NA	False	NA	-15	True	AATAAA	-14	NA	41482879	41476651	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_41476891_41477378_41477680_41482833
ES_00037411	chr3	-	3027	21	FSM	ENSMUSG00000059834.13	ENSMUST00000146125.8	2292	21	-498	-237	-12	15	multi-exon	FALSE	canonical	2	3	junction_19	11.4169829639883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGTGCATAATTGTAAT	NA	False	NA	NA	False	AATAAA	-33	NA	41696961	41581139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638_41611832_41616006_41616153_41618386_41618462_41621545_41621618_41625819_41625919_41629762_41629941_41636130_41636223_41636716_41636808_41657820_41657892_41663903_41663970_41665517_41665641_41672163_41672300_41681527_41681584_41684725_41684799_41685295_41685350_41688602_41688671_41696429
ES_00037413	chr3	-	1450	4	FSM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	-41	0	-19	0	multi-exon	FALSE	canonical	0	0	junction_3	91.1604202613295	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303988	51295832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303648
ES_00037414	chr3	-	319	1	FSM	ENSMUSG00000104241.2	ENSMUST00000194242.2	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGACAGCAAAAGGAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	51310583	51310264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51310300_51310600
ES_00037416	chr3	-	1624	1	FSM	ENSMUSG00000104831.2	ENSMUST00000197444.2	1688	1	29	35	29	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGATCTGGAAGATGCAA	NA	False	NA	NA	False	NA	NA	NA	54541960	54540336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54540300_54542000
ES_00037420	chr3	-	391	3	FSM	ENSMUSG00000027793.7	ENSMUST00000199352.2	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	2.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGATGATCCTGAACAGG	NA	False	NA	NA	False	AATGAA	-27	NA	54962458	54958400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54958517_54961753_54961940_54962369
ES_00037421	chr3	-	513	5	FSM	ENSMUSG00000027799.13	ENSMUST00000198259.2	811	5	298	0	298	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4790199457749	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGATCAAAGCCCACCCTT	NA	False	NA	NA	False	NA	NA	NA	55631070	55603780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_55603844_55618047_55618161_55625197_55625314_55630559_55630663_55630952
ES_00037422	chr3	-	3100	1	FSM	ENSMUSG00000027799.13	ENSMUST00000196577.2	7326	1	-114	4340	-114	-4340	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACGTACACTAGTTGTC	NA	False	NA	NA	False	NA	NA	NA	55875771	55872671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_55872700_55875800
ES_00037423	chr3	-	1219	1	FSM	ENSMUSG00000097366.2	ENSMUST00000181591.2	1336	1	13	104	13	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	416	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTAACAGGGCACCAGG	NA	False	NA	NA	False	NA	NA	NA	57044239	57043020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57043000_57044200
ES_00037424	chr3	-	892	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
ES_00037428	chr3	-	509	2	Genic_Genomic	ENSMUSG00000063001.11	novel	427	1	NA	NA	0	2625	multi-exon	TRUE	non_canonical	0	0	junction_1	0	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGGTAAATGATCA	NA	False	NA	NA	False	NA	NA	NA	62831654	62828602	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_62828636_62831178
ES_00037429	chr3	-	420	1	FSM	ENSMUSG00000063001.11	ENSMUST00000077976.9	427	1	49	-42	49	42	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAATAAATTAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	62831605	62831185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_62831200_62831600
ES_00037431	chr3	-	865	4	ISM	ENSMUSG00000036834.17	ENSMUST00000177143.8	6010	23	48	84424	18	222	5prime_fragment	FALSE	canonical	3	9	junction_3	3.77123616632825	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGATTTTCCCCATAAT	NA	False	NA	NA	False	ATTAAA	-5	NA	63806845	63688575	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_63688977_63691411_63691559_63778076_63778196_63806647
ES_00037432	chr3	-	950	2	Intergenic	novelGene_2553	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	23	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGGAGGGGCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	65303723	65302725	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_65302757_65302804
ES_00037433	chr3	-	398	1	FSM	ENSMUSG00000103880.2	ENSMUST00000193297.2	361	1	0	-37	0	37	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAATATATATATATATATA	NA	False	NA	NA	False	AATAAA	-14	NA	65414058	65413660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_65413700_65414100
ES_00037434	chr3	-	3727	10	FSM	ENSMUSG00000027829.16	ENSMUST00000142153.8	3414	10	1	-314	0	0	multi-exon	FALSE	canonical	3	90	junction_7	40.7042934611675	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTTTTACAAGGAAATA	NA	False	NA	NA	False	TTTAAA	-44	NA	65865583	65853615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65857966_65858854_65858976_65864273_65864384_65864921_65864997_65865228
ES_00037438	chr3	-	374	3	FSM	ENSMUSG00000103718.2	ENSMUST00000195865.2	421	3	57	-10	57	10	multi-exon	FALSE	canonical	1	1	junction_2	0.5	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTTACCACTCTGACG	3449	False	NA	NA	False	NA	NA	NA	67460701	67458651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_67458833_67460133_67460255_67460629
ES_00037439	chr3	-	270	1	FSM	ENSMUSG00000111756.2	ENSMUST00000217619.2	825	1	426	129	426	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTCCCTGCAGTGTCC	662	False	NA	NA	False	NA	NA	NA	68824230	68823960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_68824000_68824200
ES_00037440	chr3	-	3183	3	FSM	ENSMUSG00000034317.15	ENSMUST00000136512.3	1553	3	-85	-1545	-45	-4	multi-exon	FALSE	canonical	3	60	junction_2	267.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTGGTGACATAGTTTT	NA	False	NA	-10	True	AATAAA	-22	NA	68952133	68942624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_68945342_68951100_68951176_68951742
ES_00037443	chr3	-	5399	15	FSM	ENSMUSG00000034109.16	ENSMUST00000038563.14	5546	15	0	147	0	-147	multi-exon	FALSE	canonical	2	2	junction_9	9.18989018610413	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCTCTGTTTGACCCTA	NA	False	NA	NA	False	TTTAAA	-33	NA	75864236	75782537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
ES_00037444	chr3	-	2026	2	FSM	ENSMUSG00000034109.16	ENSMUST00000134219.2	2062	2	36	0	36	0	multi-exon	FALSE	canonical	3	42	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTTTAAAGCATATAATT	NA	False	NA	NA	False	AATAAA	-22	NA	75786279	75783785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75785485_75785952
ES_00037445	chr3	-	1549	6	FSM	ENSMUSG00000034109.16	ENSMUST00000131987.8	5230	6	0	3681	0	-3681	multi-exon	FALSE	canonical	3	23	junction_2	4.16653333119993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTCAAAAATTGATTCC	NA	False	NA	NA	False	AATAAA	-7	NA	75864215	75810214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
ES_00037446	chr3	-	444	1	FSM	ENSMUSG00000037096.7	ENSMUST00000036976.7	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAAATTATTGGATAA	NA	False	NA	NA	False	NA	NA	NA	78874106	78873662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_78873700_78874100
ES_00037447	chr3	-	7716	29	NIC	ENSMUSG00000062232.15	novel	6964	30	NA	NA	-764	3	combination_of_known_splicesites	FALSE	canonical	2	16	junction_23	9.02716987313119	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTAAACTTTTCATGAA	NA	False	NA	-15	True	AATAAA	-19	NA	79194588	78969831	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051_78993436_78995151_78995393_78995951_78996110_78999118_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79080214_79080383_79082280_79082357_79103241_79103326_79117997_79118055_79122263_79122335_79193770
ES_00037448	chr3	-	1146	1	FSM	ENSMUSG00000102370.2	ENSMUST00000195767.2	1289	1	39	104	39	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTTTTGCTTCTTGCTC	6866	False	NA	NA	False	NA	NA	NA	79519094	79517948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_79517900_79519100
ES_00037450	chr3	-	5488	35	NIC	ENSMUSG00000033767.15	novel	5555	35	NA	NA	16	-1	combination_of_known_junctions	TRUE	canonical	2	5	junction_9	18.2667896888406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCCACTTTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-40	NA	83947419	83804962	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820693_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ES_00037452	chr3	-	6755	7	ISM	ENSMUSG00000027993.17	ENSMUST00000065380.13	4296	12	21035	-2898	-255	0	3prime_fragment	TRUE	canonical	3	56	junction_3	11.8801889247978	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGAGTGTTTATTCAACA	NA	False	NA	-19	True	AATAAA	-21	NA	84099110	84067745	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819
ES_00037453	chr3	-	295	3	FSM	ENSMUSG00000041842.16	ENSMUST00000125643.2	471	3	176	0	176	0	multi-exon	FALSE	canonical	2	2	junction_1	2.5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATGAATGCTTCCAGATA	NA	False	NA	NA	False	AAGAAA	-10	NA	84360894	84356115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_84356222_84358676_84358795_84360823
ES_00037455	chr3	-	2666	2	FSM	ENSMUSG00000031286.7	ENSMUST00000033643.6	2732	2	62	4	62	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCCCTTTGTCTAAAGA	NA	False	NA	NA	False	AATAAA	-14	NA	85794761	85777159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_85779498_85794433
ES_00037457	chr3	-	996	8	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	26	92813	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4170.26604153055	1712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCCTGTCTCAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	86049983	85952433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_85952459_85997521_85997547_86045251_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00037458	chr3	-	995	8	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	26	92813	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4170.26604153055	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCCTGTCTCAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	86049983	85952433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_85952459_85997521_85997546_86045251_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00037459	chr3	-	998	7	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	0	92813	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3744.73218520215	1551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCCTGTCTCAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	86050009	85952433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_85952459_86045250_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00037460	chr3	-	985	7	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	26	20755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3744.73218520215	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCATGCACCCACAGGC	NA	False	NA	NA	False	NA	NA	NA	86049983	86024491	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_86024526_86045246_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ES_00037464	chr3	-	210	1	NIC	ENSMUSG00000004896.17	novel	3565	5	NA	NA	620	-1007	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCAGATTTCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	87833779	87833569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_87833600_87833800
ES_00037465	chr3	-	901	6	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_5	346.718675585841	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965799	87963826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965542_87965633
ES_00037466	chr3	-	987	3	FSM	ENSMUSG00000096935.6	ENSMUST00000181837.3	987	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCATTTCTTTCTTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	88085092	88078862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88079566_88083157_88083243_88084893
ES_00037468	chr3	-	795	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88301878_88303211_88303408_88317462
ES_00037470	chr3	-	3205	15	FSM	ENSMUSG00000028064.18	ENSMUST00000029700.12	3205	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	15.169787374238	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATGGCGTGCTGTGCTG	9696	False	NA	NA	False	ATTAAA	-23	NA	88363046	88343265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986_88357160_88357294_88357420_88357817_88357935_88358651_88358758_88358994_88359094_88359326_88359390_88360277_88360439_88361985_88362154_88362854
ES_00037472	chr3	-	1072	5	FSM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	10	-1	-8	1	multi-exon	TRUE	canonical	1	1	junction_4	5.2618912949623	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCCTTCCATCTGT	5711	False	NA	1	True	AATAAA	-25	NA	88455597	88449334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88455339
ES_00037473	chr3	-	1464	1	FSM	ENSMUSG00000074479.4	ENSMUST00000098952.4	730	1	-262	-472	-262	472	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTTTGGCCTCAGACCC	8565	False	NA	NA	False	NA	NA	NA	88484708	88483244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88483200_88484700
ES_00037474	chr3	-	1343	1	FSM	ENSMUSG00000098912.8	ENSMUST00000184013.2	2484	1	-577	1718	-561	-1718	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGGAGGCGGAGGCCT	8468	False	NA	NA	False	NA	NA	NA	88740415	88739072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88739100_88740400
ES_00037475	chr3	-	2639	6	FSM	ENSMUSG00000068922.15	ENSMUST00000137243.8	2636	6	0	-3	0	3	multi-exon	FALSE	canonical	3	691	junction_4	37.794179446047	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATCTATACCTACCTTG	NA	False	NA	-4	True	ATTAAA	-14	NA	88819381	88815930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88817726_88817932_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332
ES_00037476	chr3	-	528	2	FSM	ENSMUSG00000068921.15	ENSMUST00000173711.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88832849	88830941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88831221_88832600
ES_00037478	chr3	-	866	8	NNC	ENSMUSG00000059743.13	novel	1237	10	NA	NA	0	11021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	831.611663689052	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	89002986	88989873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88989905_89000894_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905
ES_00037480	chr3	-	2589	7	ISM	ENSMUSG00000028051.11	ENSMUST00000029686.4	4002	8	7434	703	-1530	-703	3prime_fragment	FALSE	canonical	0	0	junction_5	6.82316316348624	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACTTGTTCACTTAT	NA	False	NA	NA	False	NA	NA	NA	89060069	89054083	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_89055607_89056023_89056189_89057122_89057364_89057661_89057809_89058168_89058388_89058731_89058894_89059937
ES_00037481	chr3	-	742	4	FSM	ENSMUSG00000028039.12	ENSMUST00000200436.2	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	91.0103779186137	2764	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTTCCCATGGTTGGG	9267	False	NA	NA	False	NA	NA	NA	89230194	89222670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89222875_89223376_89223443_89223769_89224060_89230012
ES_00037482	chr3	-	3557	21	FSM	ENSMUSG00000028041.18	ENSMUST00000074582.7	2799	21	-35	-723	-14	-383	multi-exon	FALSE	canonical	3	16	junction_2	31.553882486946	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCGCGCGCGCGCGCGCG	NA	False	NA	NA	False	NA	NA	NA	89257317	89246231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89247261_89247361_89247487_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00037484	chr3	-	2799	21	NNC	ENSMUSG00000028041.18	novel	2799	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	30.6652898241644	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTCCTGGAAGCTGG	NA	False	NA	-13	True	AATAAA	-18	NA	89257282	89246948	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89247261_89247361_89247481_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00037488	chr3	-	2015	1	FSM	ENSMUSG00000078173.4	ENSMUST00000057431.6	1806	1	-292	83	-292	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACATTCTTCAGTGAATA	NA	False	NA	NA	False	NA	NA	NA	89310392	89308377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89308400_89310400
ES_00037489	chr3	-	1739	8	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	0	-421	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCATTGTTGGTGCCTGT	3744	False	NA	-21	True	AGTAAA	-12	NA	89319170	89310394	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
ES_00037492	chr3	-	208	2	Intergenic	novelGene_2595	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	672	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACATGGCCTTCTGATTA	NA	False	NA	NA	False	NA	NA	NA	89878889	89791858	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_89792048_89878870
ES_00037493	chr3	-	5423	29	NNC	ENSMUSG00000060671.13	novel	4265	28	NA	NA	0	12519	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	42.5457137101029	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGAAAAGAAAAGG	1162	False	NA	NA	False	NA	NA	NA	89870586	89834268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89834298_89846797_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89868381_89868449_89870463
ES_00037495	chr3	-	481	2	FSM	ENSMUSG00000060671.13	ENSMUST00000166705.2	652	2	41	130	41	-130	multi-exon	FALSE	canonical	3	161	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTTTGCCAGGGAC	9843	False	NA	NA	False	NA	NA	NA	89861905	89861275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89861598_89861746
ES_00037498	chr3	-	330	4	NNC	ENSMUSG00000090733.7	novel	546	4	NA	NA	0	10082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8818.28286383844	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAACCAAAAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	90120608	90109746	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90109775_90119978_90120061_90120240_90120352_90120499
ES_00037499	chr3	-	528	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197028.5	528	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	8817.37059571742	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120940	90119973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90120061_90120240_90120352_90120499_90120806_90120916
ES_00037500	chr3	-	201	2	Antisense	novelGene_ENSMUSG00000042390.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	860	junction_1	0	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCCAATTGAGCCCCAC	NA	False	NA	NA	False	NA	NA	NA	90215218	90212348	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_-_90212497_90215165
ES_00037501	chr3	-	1578	4	FSM	ENSMUSG00000001018.16	ENSMUST00000184877.8	1575	4	0	-3	0	0	multi-exon	FALSE	canonical	3	45	junction_3	310.762860643861	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	-26	True	AATAAA	-23	NA	90398331	90395676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398143
ES_00037502	chr3	-	1844	5	FSM	ENSMUSG00000001017.16	ENSMUST00000076639.11	1842	5	0	-2	0	0	multi-exon	FALSE	canonical	3	97	junction_1	581.611769138143	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416769	90406262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90407415_90410402_90410587_90413414_90413569_90414851_90414934_90416497
ES_00037504	chr3	-	723	1	FSM	ENSMUSG00000104631.2	ENSMUST00000196327.2	878	1	147	8	147	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCATCTCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94444648	94443925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94443900_94444600
ES_00037505	chr3	-	3089	12	Fusion	ENSMUSG00000081355.2_ENSMUSG00000005968.15	novel	2555	12	NA	NA	0	598	multi-exon	FALSE	non_canonical	3	14	junction_10	27.6572887289176	431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCCGCCCCAGATGTGGC	NA	False	NA	NA	False	AATACA	-22	NA	94665423	94519465	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94627329_94627396_94629191_94629282_94630124_94630212_94640266_94640369_94665341
ES_00037508	chr3	-	1601	2	FSM	ENSMUSG00000084846.2	ENSMUST00000135483.2	1601	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATCACTTCCTCCAGGA	NA	False	NA	NA	False	NA	NA	NA	94904661	94902353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94903423_94904129
ES_00037511	chr3	-	202	2	Intergenic	novelGene_2616	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACATACTTTATTAACAT	NA	False	NA	NA	False	NA	NA	NA	94939675	94928493	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_94928599_94939578
ES_00037513	chr3	-	1626	8	FSM	ENSMUSG00000005625.16	ENSMUST00000136868.2	1626	8	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_1	401.64727138653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGGTGTGGATCCCAACA	NA	False	NA	NA	False	NA	NA	NA	94949856	94940233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ES_00037515	chr3	-	3608	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	0	10	0	3	multi-exon	FALSE	canonical	3	17	junction_14	9.68798961896341	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAATGCTTTTATTAGT	1253	False	NA	2	True	ATTAAA	-25	NA	95014186	94965850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990137_95013686
ES_00037517	chr3	-	8375	9	FSM	ENSMUSG00000038766.17	ENSMUST00000107209.8	8357	9	0	-18	0	18	multi-exon	FALSE	canonical	3	10	junction_7	6.12244844812923	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACAGCATGGTTAAAAA	8983	False	NA	-4	True	AATAAA	-36	NA	95125020	95089058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95123524_95123580_95124899
ES_00037518	chr3	-	1081	6	FSM	ENSMUSG00000038766.17	ENSMUST00000107204.8	1539	6	0	458	0	-458	multi-exon	FALSE	canonical	2	6	junction_3	8.88594395660922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATGCCTGGCCTATGTT	8938	False	NA	NA	False	NA	NA	NA	95125065	95110781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
ES_00037519	chr3	-	1796	10	FSM	ENSMUSG00000028115.17	ENSMUST00000107195.9	1810	10	14	0	14	0	multi-exon	TRUE	canonical	1	1	junction_9	2.53859103528797	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGCCTAGGGACCAAC	NA	False	NA	NA	False	AATAAA	-19	NA	95158490	95148581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95149173_95150042_95150142_95150308_95150396_95151452_95151585_95152295_95152399_95152960_95153144_95155886_95156112_95157116_95157182_95157477_95157574_95158275
ES_00037520	chr3	-	4573	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	47.7030211966969	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1688	False	NA	-4	True	ATTAAA	-15	NA	95264467	95230835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
ES_00037521	chr3	-	3857	18	FSM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	0	-1	0	1	multi-exon	FALSE	canonical	1	3	junction_17	6.21918006589627	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCTCTTCGTTATGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	95595169	95583512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670_95592009_95592268_95592327_95592765_95592864_95595131
ES_00037527	chr3	-	2352	16	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	0	32554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	113.494121237867	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAGAGAGAGAATTT	939	False	NA	NA	False	NA	NA	NA	95760944	95704881	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_95704908_95737900_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755
ES_00037530	chr3	-	407	2	FSM	ENSMUSG00000054312.7	ENSMUST00000072587.5	405	2	0	-2	0	2	multi-exon	FALSE	canonical	3	901	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAGGCTTGGACATACA	NA	False	NA	NA	False	AATAAA	-19	NA	95777931	95769963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95770245_95777805
ES_00037533	chr3	-	1967	1	FSM	ENSMUSG00000093656.2	ENSMUST00000177363.2	3215	1	80	1168	80	-1168	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATAGTGAAAGGAACCAA	NA	False	NA	NA	False	NA	NA	NA	96177525	96175558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96175600_96177500
ES_00037534	chr3	-	2402	15	FSM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	0	4	0	-4	multi-exon	FALSE	canonical	3	35	junction_14	52.4860039652944	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTATATGTATCTGTTC	NA	False	NA	NA	False	AATAAA	-13	NA	96634757	96618842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634428
ES_00037535	chr3	-	2011	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	3	17	junction_13	58.8212617035912	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAATTATATGTATCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	96634770	96618844	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96634664
ES_00037537	chr3	-	808	4	FSM	ENSMUSG00000028099.9	ENSMUST00000141377.8	808	4	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_1	11.8415464455544	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGTGTGCCAGTCAT	NA	False	NA	-1	True	AATGAA	-22	NA	96634770	96630735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96631016_96631112_96631369_96633149_96633316_96634664
ES_00037540	chr3	-	2971	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	4	6	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_2	80.5130886130729	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGCTTTTTTTCTTAC	NA	False	NA	-2	True	AATAGA	-19	NA	97517504	97468051	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_97468404_97469894_97470000_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498673_97501319_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ES_00037541	chr3	-	2979	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_16	59.5314348519939	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGCTTTTTTTCTTAC	NA	False	NA	-2	True	AATAGA	-19	NA	97517508	97468051	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498673_97501319_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ES_00037542	chr3	-	2805	13	NIC	ENSMUSG00000038170.16	novel	8376	47	NA	NA	-12268	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_10	2.93919868142473	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTCCTTTGCTTCTCA	NA	False	NA	NA	False	ATTAAA	-21	NA	97616851	97597139	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_97598170_97599636_97599684_97599911_97600051_97601251_97601396_97602207_97602435_97603194_97603315_97604305_97604531_97606424_97606550_97607110_97607301_97608873_97608994_97609551_97609684_97610482_97610735_97616797
ES_00037545	chr3	-	767	1	FSM	ENSMUSG00000105641.2	ENSMUST00000197183.2	632	1	-154	19	-154	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATGAAGAAGATGATGAAT	NA	False	NA	NA	False	NA	NA	NA	98487868	98487101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_98487100_98487900
ES_00037546	chr3	-	5515	2	FSM	ENSMUSG00000044468.15	ENSMUST00000061455.9	5640	2	125	0	-1	0	multi-exon	FALSE	canonical	3	4	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCAGTTATGCTCCTTA	NA	False	NA	NA	False	AATAAA	-24	NA	100396515	100375372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_100380782_100396409
ES_00037547	chr3	-	770	1	FSM	ENSMUSG00000072381.4	ENSMUST00000097146.4	517	1	-111	-142	-111	142	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-25	NA	101214506	101213736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_101213700_101214500
ES_00037548	chr3	-	958	5	NNC	ENSMUSG00000027860.16	novel	818	5	NA	NA	492	-5	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	110.3653025185	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATATGTCCAGG	NA	False	NA	NA	False	AAAACA	-19	NA	102073754	102065503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102073513
ES_00037549	chr3	-	3440	33	FSM	ENSMUSG00000027855.14	ENSMUST00000029448.11	3437	33	0	-3	0	3	multi-exon	FALSE	canonical	3	8	junction_28	23.7190382064176	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTCATTGATTTTTGT	NA	False	NA	1	True	ATTAAA	-17	NA	102843416	102725811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102839958_102840124_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
ES_00037550	chr3	-	419	2	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTGTGAAAATCTACCT	NA	False	NA	NA	False	AATAAA	-18	NA	103029403	103026112	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_-_103026360_103029231
ES_00037551	chr3	-	807	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20598	95	intron_retention	FALSE	non_canonical	0	0	junction_1	0	507	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTAAAAGACGCACAGT	NA	False	NA	-45	True	NA	NA	NA	103126889	103105446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_103106156_103126791
ES_00037552	chr3	-	651	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20598	95	intron_retention	FALSE	canonical	3	194	junction_1	0	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTAAAAGACGCACAGT	NA	False	NA	-45	True	NA	NA	NA	103126889	103105446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_103106001_103126792
ES_00037553	chr3	-	797	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20559	4	intron_retention	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126850	103105537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_103106277_103126792
ES_00037554	chr3	-	235	2	Antisense	novelGene_ENSMUSG00000033014.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	382	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGGCTACATACCAAGT	NA	False	NA	NA	False	NA	NA	NA	103205185	103204718	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_-_103204873_103205104
ES_00037558	chr3	-	900	1	FSM	ENSMUSG00000089999.2	ENSMUST00000160676.2	439	1	-110	-351	-110	351	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTTGGCTCACAGTT	NA	False	NA	-3	True	AATAAA	-21	NA	104660591	104659691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104659700_104660600
ES_00037559	chr3	-	3709	21	NIC	ENSMUSG00000002227.16	novel	3584	21	NA	NA	0	26	combination_of_known_splicesites	TRUE	canonical	3	106	junction_20	272.054755518076	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTCTTGCTTCCTGTG	NA	False	NA	1	True	AAAACA	-43	NA	104725879	104702125	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725438_104725573
ES_00037560	chr3	-	3562	20	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	4	-5	0	5	intron_retention	FALSE	canonical	3	1102	junction_11	86.7727314610285	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTGCGTGTGTCTCATC	NA	False	NA	-20	True	AAGAAA	-26	NA	104725617	104702146	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
ES_00037563	chr3	-	640	1	FSM	ENSMUSG00000106251.2	ENSMUST00000197199.2	1575	1	371	564	371	-564	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCAGTAATCTCAGCGTT	NA	False	NA	NA	False	ACTAAA	-27	NA	104734849	104734209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_104734200_104734800
ES_00037565	chr3	-	1377	8	FSM	ENSMUSG00000068798.11	ENSMUST00000199969.5	1377	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	204.885134568975	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGGATGATTAAATTTT	NA	False	NA	40	True	ATTAAA	-9	NA	105657644	105635629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_105636281_105639271_105639388_105642380_105642496_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560
ES_00037566	chr3	-	1164	8	NNC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	0	75157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1650.95260071146	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTAACATAGGGAGTCA	NA	False	NA	NA	False	NA	NA	NA	105866580	105774856	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_105774887_105850015_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ES_00037568	chr3	-	1141	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	853	-23	0	23	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCACTTCTTTATTATGTA	NA	False	NA	3	True	AATAAA	-39	NA	105866562	105849990	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ES_00037570	chr3	-	244	1	Genic_Genomic	ENSMUSG00000105102.2	novel	NA	NA	NA	NA	-131	-51942	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTGTAAGCCAGCCCCAA	3372	False	NA	NA	False	NA	NA	NA	106786808	106786564	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_106786600_106786800
ES_00037571	chr3	-	3283	3	NNC	ENSMUSG00000048109.11	novel	4343	2	NA	NA	0	41266	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAATTTGATAACTGAAAA	NA	False	NA	NA	False	NA	NA	NA	107240417	107191470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_107191502_107233255_107233621_107237530
ES_00037572	chr3	-	1992	4	FSM	ENSMUSG00000027895.11	ENSMUST00000238670.2	2664	4	571	101	571	-101	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATCGCGGTACAGTTCGC	NA	False	NA	NA	False	GGGGCT	-10	NA	107366297	107350723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107350794_107352745_107352950_107354819_107355757_107365516
ES_00037575	chr3	-	1225	8	NIC	ENSMUSG00000004035.13	novel	1377	8	NA	NA	11	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	4.15515416349971	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTTTTTCTTTGGTCG	NA	False	NA	-8	True	NA	NA	NA	107838915	107833650	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838867
ES_00037576	chr3	-	1230	7	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	-10691	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	114.418457135784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTTTCTTTTGCT	8521	False	NA	1	True	AATAAA	-21	NA	107887290	107871010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420_107876474_107887063
ES_00037577	chr3	-	1787	8	NNC	ENSMUSG00000027890.18	novel	1707	8	NA	NA	0	123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.2329948866726	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCAGTCACTCTGACTAG	NA	False	NA	NA	False	NA	NA	NA	107952182	107947600	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107951952
ES_00037579	chr3	-	4190	3	FSM	ENSMUSG00000048796.8	ENSMUST00000106655.2	4275	3	0	85	0	-1	multi-exon	FALSE	canonical	0	0	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTATGCTCTGTCCTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	108108150	108103087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108107032_108107440_108107479_108107942
ES_00037580	chr3	-	642	4	FSM	ENSMUSG00000068740.15	ENSMUST00000147565.3	658	4	16	0	16	0	multi-exon	FALSE	canonical	3	5	junction_2	1.24721912892465	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCAATGTGGAGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	108309889	108308575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108308637_108308715_108309004_108309252_108309420_108309763
ES_00037581	chr3	-	553	5	FSM	ENSMUSG00000027882.19	ENSMUST00000106596.4	553	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	53.7331368896326	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTGTACTGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	108747826	108732933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_108733187_108733321_108733399_108734341_108734424_108734888_108734939_108747735
ES_00037584	chr3	-	4485	16	FSM	ENSMUSG00000033502.16	ENSMUST00000090464.7	4485	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	3.61232458243842	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGGCATTCATTAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	116217681	116066201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116068358_116087374_116087736_116088399_116088523_116090779_116090828_116092085_116092199_116101788_116101949_116115730_116115870_116122127_116122359_116126443_116126532_116142102_116142166_116144854_116144922_116160275_116160356_116186470_116186564_116198191_116198268_116216215_116216307_116217085
ES_00037586	chr3	-	1724	11	FSM	ENSMUSG00000033439.13	ENSMUST00000183638.8	1723	11	0	-1	0	0	multi-exon	FALSE	canonical	2	6	junction_5	35.5437758264369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388509	116374742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ES_00037587	chr3	-	1991	9	FSM	ENSMUSG00000033439.13	ENSMUST00000156161.8	1991	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	12.4993749843742	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGACAGAGACAC	NA	False	NA	NA	False	NA	NA	NA	116388536	116377772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ES_00037588	chr3	-	647	3	FSM	ENSMUSG00000089911.5	ENSMUST00000130631.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_1	29	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACCTACCTGAAGCCGGC	NA	False	NA	NA	False	NA	NA	NA	116439381	116434948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116435010_116435358_116435578_116439014
ES_00037590	chr3	-	770	4	FSM	ENSMUSG00000033400.15	ENSMUST00000162040.2	1572	4	600	202	-14	-202	multi-exon	FALSE	canonical	3	59	junction_1	4.24264068711928	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACATTAAAGTGTTATTA	NA	False	NA	NA	False	NA	NA	NA	116601080	116584630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116584859_116585666_116585834_116587260_116587472_116600916
ES_00037592	chr3	-	3000	14	NIC	ENSMUSG00000028134.12	novel	3777	14	NA	NA	17	-257	combination_of_known_junctions	FALSE	canonical	3	6	junction_6	23.8597975856545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTTGGGAGGTTTGAT	NA	False	NA	NA	False	ATTAAA	-14	NA	119576918	119512647	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519870_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ES_00037594	chr3	-	2693	1	FSM	ENSMUSG00000105813.2	ENSMUST00000197338.2	3339	1	-2	648	-2	-648	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTCGAAATTACAACCC	NA	False	NA	NA	False	NA	NA	NA	121221225	121218532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_121218500_121221200
ES_00037595	chr3	-	2541	15	NNC	ENSMUSG00000039865.9	novel	2620	15	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	4.34541747835861	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTTTGTTCATCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	121325977	121253176	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279995_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
ES_00037596	chr3	-	405	2	NNC	ENSMUSG00000057359.8	novel	1800	2	NA	NA	19709	-1108	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTGGGAACCATTTGT	NA	False	NA	NA	False	NA	NA	NA	122067487	122050714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_122051084_122067451
ES_00037597	chr3	-	405	2	NNC	ENSMUSG00000057359.8	novel	1800	2	NA	NA	19709	-1111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAACTGGGAACCATT	NA	False	NA	NA	False	NA	NA	NA	122067487	122050717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_122051087_122067451
ES_00037599	chr3	-	889	2	FSM	ENSMUSG00000106365.2	ENSMUST00000199116.2	1270	2	388	-7	105	7	multi-exon	FALSE	canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGATGTCT	NA	False	NA	NA	False	NA	NA	NA	122423429	122415896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122416631_122423274
ES_00037600	chr3	-	433	1	FSM	ENSMUSG00000106562.2	ENSMUST00000199912.2	487	1	251	-197	251	197	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAAAAGAGAAGAATT	NA	False	NA	NA	False	AATAAA	-10	NA	122426669	122426236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122426200_122426700
ES_00037604	chr3	-	963	1	FSM	ENSMUSG00000039701.12	ENSMUST00000197358.2	3407	1	2492	-48	774	48	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATCCAGGGAAACAAAAGT	NA	False	NA	NA	False	AATAAA	-41	NA	122754324	122753361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_122753400_122754300
ES_00037606	chr3	-	624	2	ISM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	66	7	-5	-2	intron_retention	FALSE	canonical	3	427	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATAAGACTGTGTCCTGT	NA	False	NA	41	True	AATAAA	-14	NA	123301987	123301207	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_123301310_123301465
ES_00037607	chr3	-	3741	1	FSM	ENSMUSG00000032826.20	ENSMUST00000182588.5	2359	1	-1379	-3	-1379	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCAGTGGTGGTTTTGT	NA	False	NA	-4	True	AATAAA	-17	NA	126719000	126715259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_126715300_126719000
ES_00037608	chr3	-	207	1	FSM	ENSMUSG00000089988.3	ENSMUST00000159343.3	586	1	452	-73	452	73	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTGTCCATTAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	127485717	127485510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_127485500_127485700
ES_00037610	chr3	-	229	2	Genic_Genomic	ENSMUSG00000105008.2	novel	675	1	NA	NA	-65216	-499	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTTGTTTGAAAAAGACG	NA	False	NA	NA	False	NA	NA	NA	127722723	127657331	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_127657370_127722532
ES_00037613	chr3	-	685	4	FSM	ENSMUSG00000028010.17	ENSMUST00000149071.2	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_3	133.763472841679	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGTGGTGGAAGAGGTGG	NA	False	NA	NA	False	NA	NA	NA	129624581	129620491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_129620624_129622553_129622614_129622985_129623141_129624243
ES_00037615	chr3	-	1739	1	FSM	ENSMUSG00000041084.9	ENSMUST00000197828.2	1720	1	-28	9	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGTCATACTAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	130503093	130501354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130501400_130503100
ES_00037616	chr3	-	766	2	FSM	ENSMUSG00000062006.13	ENSMUST00000199911.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTGGGGAGGAGACGG	NA	False	NA	NA	False	NA	NA	NA	130523996	130522215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130522952_130523966
ES_00037617	chr3	-	364	2	FSM	ENSMUSG00000050931.8	ENSMUST00000197057.2	364	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCACCAACACTTACACA	NA	False	NA	NA	False	NA	NA	NA	131196240	131135817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_131136110_131196168
ES_00037618	chr3	-	1157	8	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	0	6599	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	325.166707636409	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	132389645	132359642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_132359675_132366260_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
ES_00037621	chr3	-	584	1	FSM	ENSMUSG00000028029.12	ENSMUST00000199638.2	3958	1	3708	-334	-2889	334	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTCCCTAAAGAGAACCA	NA	False	NA	NA	False	NA	NA	NA	132385889	132385305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_132385300_132385900
ES_00037622	chr3	-	3601	13	FSM	ENSMUSG00000040998.19	ENSMUST00000042729.16	3601	13	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	2.98491578142872	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACATAAAATGTTAGGTAT	NA	False	NA	NA	False	ATTAAA	-14	NA	132655921	132588443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_132590275_132591516_132591774_132596524_132596624_132597162_132597250_132610418_132610815_132612107_132612231_132612455_132612591_132614103_132614224_132615656_132615777_132623221_132623315_132637342_132637394_132653807_132653909_132655733
ES_00037623	chr3	-	1503	4	ISM	ENSMUSG00000028018.16	ENSMUST00000161577.8	1975	10	-77	72981	1	9417	5prime_fragment	FALSE	canonical	3	184	junction_1	16.8720676464584	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTATGCATCTTATTTA	NA	False	NA	NA	False	AATAAA	-17	NA	132797585	132777572	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_132777913_132787799_132788268_132790336_132790787_132797340
ES_00037626	chr3	-	493	1	FSM	ENSMUSG00000028165.10	ENSMUST00000196942.2	3453	1	-3	2963	0	-2057	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCCTGTATTAACGAAAT	NA	False	NA	NA	False	NA	NA	NA	135129168	135128675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_135128700_135129200
ES_00037627	chr3	-	7726	1	FSM	ENSMUSG00000105449.2	ENSMUST00000196253.2	7726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAATGAAGAGGGG	NA	False	NA	NA	False	NA	NA	NA	135141649	135133923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_135133900_135141600
ES_00037628	chr3	-	205	1	Intergenic	novelGene_2676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGGAACTCAGGGTTGGA	NA	False	NA	NA	False	NA	NA	NA	135203729	135203524	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_135203500_135203700
ES_00037629	chr3	-	2546	8	FSM	ENSMUSG00000028273.16	ENSMUST00000196908.5	1196	8	-90	-1260	-12	119	multi-exon	FALSE	canonical	3	7	junction_1	69.1041804459183	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTAGATAATGAAGCAAC	6988	False	NA	NA	False	CATAAA	-9	NA	142101469	142007721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_142009183_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
ES_00037630	chr3	-	5622	23	NNC	ENSMUSG00000004591.17	novel	6207	22	NA	NA	0	59488	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.040212685389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTGAAATTAGGGGTGCA	NA	False	NA	NA	False	CATAAA	-7	NA	142587681	142437174	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_142437291_142497279_142499776_142499863_142499945_142500148_142500257_142504663_142504807_142505565_142505643_142506800_142506864_142509314_142509492_142515233_142515326_142515402_142515479_142515584_142515716_142516121_142516249_142516451_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ES_00037647	chr3	-	1432	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_9	287.574145028528	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6169	False	NA	0	True	AATAAA	-17	NA	153618577	153612923	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ES_00037651	chr3	-	2643	12	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	167.326720534883	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157737395	157716555	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_157717838_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ES_00037652	chr3	-	940	9	FSM	ENSMUSG00000055436.19	ENSMUST00000126716.9	940	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	300.323471443709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTCTAGTAAAGAAATAGA	NA	False	NA	-79	True	NA	NA	NA	157742233	157725027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157728879_157728997_157729759_157729869_157732361_157732496_157737088_157737286_157742152
ES_00037654	chr3	+	733	1	Intergenic	novelGene_2478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCACATGTAACTCTTAA	857	False	NA	NA	False	NA	NA	NA	7630079	7630812	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_7630100_7630800
ES_00037655	chr3	+	302	1	Intergenic	novelGene_2480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTAGAATGGCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	7857572	7857874	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_7857600_7857900
ES_00037656	chr3	+	702	1	Intergenic	novelGene_2483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACTTACAGTTAAAACG	NA	False	NA	NA	False	NA	NA	NA	7858764	7859466	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_7858800_7859500
ES_00037657	chr3	+	221	1	Intergenic	novelGene_2485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTAAAACCCACACATGT	NA	False	NA	NA	False	NA	NA	NA	8449278	8449499	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_8449300_8449500
ES_00037658	chr3	+	227	1	Intergenic	novelGene_2486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCCATTCTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	8455467	8455694	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_8455500_8455700
ES_00037659	chr3	+	6158	1	Intergenic	novelGene_2493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3767	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTAGGAGGCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	12994338	13000496	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_12994300_13000500
ES_00037660	chr3	+	238	1	Intergenic	novelGene_2498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAACACCAGGACCAAAG	1787	False	NA	NA	False	NA	NA	NA	19219439	19219677	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_19219400_19219700
ES_00037661	chr3	+	318	1	Intergenic	novelGene_2499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACAGATCTCTGCAGGTG	8334	False	NA	NA	False	TTTAAA	-23	NA	19965682	19966000	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_19965700_19966000
ES_00037662	chr3	+	864	1	Intergenic	novelGene_2500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACTATACAAACAATCAAC	547	False	NA	NA	False	NA	NA	NA	19989730	19990594	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_19989700_19990600
ES_00037663	chr3	+	225	1	Intergenic	novelGene_2508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGTTGCAGATGCTCTTA	NA	False	NA	NA	False	NA	NA	NA	23328658	23328883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_23328700_23328900
ES_00037664	chr3	+	206	1	Intergenic	novelGene_2509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGAAGTAAAATTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	23330595	23330801	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_23330600_23330800
ES_00037665	chr3	+	215	1	Intergenic	novelGene_2514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTCTTTAATAGAACAT	NA	False	NA	NA	False	NA	NA	NA	25212745	25212960	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_25212700_25213000
ES_00037667	chr3	+	237	1	Intergenic	novelGene_2518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTAGTTTGAGATCGGA	NA	False	NA	NA	False	NA	NA	NA	27256582	27256819	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_27256600_27256800
ES_00037668	chr3	+	214	1	Intergenic	novelGene_2519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	27733293	27733507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_27733300_27733500
ES_00037669	chr3	+	214	1	Intergenic	novelGene_2521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	320	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCACAGTCTTAAACCCA	NA	False	NA	NA	False	NA	NA	NA	31114918	31115132	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_31114900_31115100
ES_00037670	chr3	+	218	1	Intergenic	novelGene_2527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTTCCCTTTTAACGG	NA	False	NA	NA	False	NA	NA	NA	34939716	34939934	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_34939700_34939900
ES_00037671	chr3	+	207	1	Intergenic	novelGene_2536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGGAGAATAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	50947464	50947671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_50947500_50947700
ES_00037672	chr3	+	201	1	Intergenic	novelGene_2539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCACAGTTGGACTTAGA	NA	False	NA	NA	False	AAAAAG	-2	NA	51287984	51288185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_51288000_51288200
ES_00037673	chr3	+	2420	1	Intergenic	novelGene_2546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTAGTGCATTCCCA	NA	False	NA	NA	False	NA	NA	NA	57590135	57592555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_57590100_57592600
ES_00037675	chr3	+	204	1	Intergenic	novelGene_2547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTATAGCAGTTACTTA	NA	False	NA	NA	False	NA	NA	NA	58855390	58855594	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_58855400_58855600
ES_00037676	chr3	+	200	1	Intergenic	novelGene_2548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTGTGTTTTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	59062680	59062880	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_59062700_59062900
ES_00037678	chr3	+	213	1	Intergenic	novelGene_2555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGGCATTCTTAAAGAC	NA	False	NA	NA	False	NA	NA	NA	69606211	69606424	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_69606200_69606400
ES_00037679	chr3	+	210	1	Intergenic	novelGene_2556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCATTTGTCAATTCTT	7564	False	NA	NA	False	NA	NA	NA	69729659	69729869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_69729700_69729900
ES_00037680	chr3	+	204	1	Intergenic	novelGene_2561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGTCCATGTTCCCAGC	NA	False	NA	NA	False	NA	NA	NA	72908246	72908450	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_72908200_72908400
ES_00037681	chr3	+	242	1	Intergenic	novelGene_2566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGTTCTTGTGATTTC	NA	False	NA	NA	False	NA	NA	NA	78018296	78018538	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_78018300_78018500
ES_00037682	chr3	+	201	1	Intergenic	novelGene_2568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTATTCTCTTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	79558228	79558429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_79558200_79558400
ES_00037685	chr3	+	202	1	Intergenic	novelGene_2570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTAGGATTCTTTAGGG	NA	False	NA	NA	False	NA	NA	NA	84496571	84496773	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_84496600_84496800
ES_00037686	chr3	+	201	1	Intergenic	novelGene_2572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCCAGTCCTCTTAACA	NA	False	NA	NA	False	NA	NA	NA	86128692	86128893	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_86128700_86128900
ES_00037687	chr3	+	233	1	Intergenic	novelGene_2582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCCACCATGTGGTTG	938	False	NA	NA	False	NA	NA	NA	88622865	88623098	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88622900_88623100
ES_00037688	chr3	+	227	1	Intergenic	novelGene_2583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGTAGCAAGACCAAAGAA	NA	False	NA	NA	False	NA	NA	NA	88657917	88658144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88657900_88658100
ES_00037689	chr3	+	219	1	Intergenic	novelGene_2596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAGGATTCTATTTCAG	NA	False	NA	NA	False	NA	NA	NA	89885952	89886171	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89886000_89886200
ES_00037690	chr3	+	230	1	Intergenic	novelGene_2597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACCTTAAATCAGGATTC	NA	False	NA	NA	False	NA	NA	NA	89898480	89898710	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89898500_89898700
ES_00037691	chr3	+	203	1	Intergenic	novelGene_2598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATATTGTATGAATTTTT	NA	False	NA	NA	False	NA	NA	NA	90382630	90382833	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_90382600_90382800
ES_00037692	chr3	+	651	1	Intergenic	novelGene_2603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGTAATAAGGACCGAT	NA	False	NA	NA	False	NA	NA	NA	93604137	93604788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93604100_93604800
ES_00037694	chr3	+	416	1	Intergenic	novelGene_2609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCATAGCTGGTATTAAA	5095	False	NA	NA	False	NA	NA	NA	93826021	93826437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93826000_93826400
ES_00037696	chr3	+	206	1	Intergenic	novelGene_2614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTATGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	94612572	94612778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_94612600_94612800
ES_00037697	chr3	+	272	1	Intergenic	novelGene_2637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGCCTGGGCTACTACA	9468	False	NA	NA	False	NA	NA	NA	96498193	96498465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96498200_96498500
ES_00037700	chr3	+	223	1	Intergenic	novelGene_2641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAATTCTGTTAGAGGC	NA	False	NA	NA	False	NA	NA	NA	100218661	100218884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_100218700_100218900
ES_00037701	chr3	+	200	1	Intergenic	novelGene_2644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCATTGTTGTAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	100754598	100754798	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_100754600_100754800
ES_00037702	chr3	+	202	1	Intergenic	novelGene_2649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCAATTCTTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	104181766	104181968	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_104181800_104182000
ES_00037703	chr3	+	209	1	Intergenic	novelGene_2650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTACCATAGCAATCCT	NA	False	NA	NA	False	AGTAAA	-16	NA	104543374	104543583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_104543400_104543600
ES_00037704	chr3	+	201	1	Intergenic	novelGene_2659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCCAAAACCAAAAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	115495519	115495720	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_115495500_115495700
ES_00037705	chr3	+	351	1	Intergenic	novelGene_2660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	116373873	116374224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_116373900_116374200
ES_00037706	chr3	+	215	1	Intergenic	novelGene_2661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTTTTTCTTTAAACAC	3862	False	NA	NA	False	NA	NA	NA	116516981	116517196	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_116517000_116517200
ES_00037707	chr3	+	206	1	Intergenic	novelGene_2663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAGCATATCTACC	NA	False	NA	NA	False	NA	NA	NA	121178271	121178477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_121178300_121178500
ES_00037708	chr3	+	338	1	Intergenic	novelGene_2672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATCTGCATATCTTGGTC	1042	False	NA	NA	False	NA	NA	NA	129462989	129463327	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_129463000_129463300
ES_00037712	chr3	+	3413	3	FSM	ENSMUSG00000027500.11	ENSMUST00000191847.2	3413	3	0	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	112	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-39	NA	8574574	8613833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_8574691_8606900_8606997_8610632
ES_00037713	chr3	+	1797	8	NNC	ENSMUSG00000027552.15	novel	1779	8	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	75.6598186837988	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATCTTTGGGGGAATGTG	1907	False	NA	30	True	AATAAA	-23	NA	14643685	14671369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_14644084_14652369_14652480_14653199_14653360_14666057_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
ES_00037715	chr3	+	4193	1	FSM	ENSMUSG00000048106.7	ENSMUST00000198527.3	6148	1	-94	2049	-94	-2049	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTTGGTCTATCGTGAG	NA	False	NA	NA	False	NA	NA	NA	19948955	19953148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_19949000_19953100
ES_00037716	chr3	+	8133	17	NIC	ENSMUSG00000027630.14	novel	8237	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	65.5017890977033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGACAATTACTAATGT	NA	False	NA	11	True	ATTAAA	-23	NA	22130890	22270758	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_22131119_22157030_22157112_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ES_00037717	chr3	+	10436	31	FSM	ENSMUSG00000027692.17	ENSMUST00000159236.9	12276	31	14	1826	14	-1826	multi-exon	FALSE	canonical	0	0	junction_2	5.59851170699261	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCAGCAACCAGCTTTGG	4070	False	NA	NA	False	NA	NA	NA	28317377	28728181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_28317849_28413139_28413206_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ES_00037719	chr3	+	6632	31	NIC	ENSMUSG00000027692.17	novel	1340	13	NA	NA	21	-5	combination_of_known_junctions	FALSE	canonical	2	5	junction_13	4.82171016226493	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGCCATGCCTTTTATA	NA	False	NA	6	True	AATAAA	-16	NA	28463600	28724729	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_28463699_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28649055_28649143_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ES_00037721	chr3	+	351	3	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	196	combination_of_known_junctions	FALSE	canonical	3	450	junction_2	1664.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGCATTAGTCTGCGAAA	NA	False	NA	NA	False	NA	NA	NA	28859658	28861045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_28859693_28860651_28860742_28860818
ES_00037722	chr3	+	1808	3	FSM	ENSMUSG00000037625.8	ENSMUST00000046174.8	1870	3	62	0	62	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTCTTTAGTCTTCTGT	NA	False	NA	16	True	AATAAA	-20	NA	31204130	31218473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_31204525_31208062_31208228_31217224
ES_00037724	chr3	+	2484	1	FSM	ENSMUSG00000027680.16	ENSMUST00000200425.2	2484	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAGAAAAATTCCTAAT	NA	False	NA	NA	False	NA	NA	NA	34100780	34103264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34100800_34103300
ES_00037725	chr3	+	5536	1	FSM	ENSMUSG00000105176.2	ENSMUST00000197014.2	5342	1	-336	142	-336	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATATGGGTGTTAGGGA	NA	False	NA	NA	False	NA	NA	NA	34124471	34130007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34124500_34130000
ES_00037726	chr3	+	203	1	FSM	ENSMUSG00002075836.1	ENSMUST00020182624.1	108	1	5	-100	5	100	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGGGGAAAGGAGATTGG	7385	False	NA	NA	False	NA	NA	NA	34707331	34707534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_34707300_34707500
ES_00037727	chr3	+	234	2	Intergenic	novelGene_2528	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTTTTAAAAAGCATG	NA	False	NA	NA	False	NA	NA	NA	35095671	35129014	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_35095702_35128810
ES_00037728	chr3	+	337	1	FSM	ENSMUSG00000037400.18	ENSMUST00000200351.2	1906	1	-32	1601	-32	-1601	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGAGGGCTGGGTGGC	NA	False	NA	NA	False	NA	NA	NA	35808222	35808559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_35808200_35808600
ES_00037729	chr3	+	4102	25	FSM	ENSMUSG00000037400.18	ENSMUST00000198599.2	4102	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	120.352578100993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGTTGTTGCATGTTA	NA	False	NA	9	True	AATAAA	-15	NA	35843754	35910423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35895178_35895265_35903582_35903714_35909253
ES_00037732	chr3	+	3958	27	FSM	ENSMUSG00000037270.19	ENSMUST00000123916.8	3958	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.3696446160137	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTCTTGCCTCTCTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	36917269	36997545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_36917498_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146_36985285_36991137_36991318_36992594_36992724_36994901_36995022_36996331_36996613_36997267
ES_00037733	chr3	+	3963	27	NIC	ENSMUSG00000037270.19	novel	3958	27	NA	NA	0	74	combination_of_known_junctions	FALSE	canonical	3	48	junction_22	8.53958759033583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGGGGTTAAAATAATCTA	NA	False	NA	NA	False	AATAAA	-12	NA	36917269	36997619	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_36917429_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146_36985285_36991137_36991318_36992594_36992724_36994901_36995022_36996331_36996613_36997267
ES_00037734	chr3	+	6910	38	NIC	ENSMUSG00000037270.19	novel	15541	84	NA	NA	-14509	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	11.8837810177698	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCATAGTTGTTTCATA	2584	False	NA	3	True	AATAAA	-17	NA	37046825	37107163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_37046877_37048923_37049131_37050463_37050703_37052338_37052584_37054164_37054271_37056718_37056817_37057897_37058084_37058987_37059157_37061133_37061346_37062542_37062742_37065093_37065154_37065716_37065944_37067028_37067160_37068553_37068678_37075595_37075706_37076532_37076624_37077118_37077182_37080238_37080493_37082188_37082405_37084049_37084231_37084695_37084793_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ES_00037738	chr3	+	3655	7	ISM	ENSMUSG00000037818.17	ENSMUST00000159774.7	4455	13	25252	24	6713	-22	3prime_fragment	FALSE	canonical	3	14	junction_1	4.85340659285368	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAATCTATTTTAGAA	NA	False	NA	NA	False	AATATA	-38	NA	40873831	40892549	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
ES_00037739	chr3	+	731	6	FSM	ENSMUSG00000025766.15	ENSMUST00000194346.6	744	6	13	0	13	0	multi-exon	FALSE	canonical	3	24	junction_1	7.2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTACAACAAACATTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	41699117	41710590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
ES_00037741	chr3	+	201	2	Genic_Genomic	ENSMUSG00000048332.14	novel	3099	1	NA	NA	3	52532	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAACTTTTTCTAACTC	NA	False	NA	NA	False	NA	NA	NA	53136748	53221632	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_53136772_53221454
ES_00037743	chr3	+	2892	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	1	-76	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_26	132.864949006712	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTGCTGTGTGTGCACA	NA	False	NA	NA	False	AATGAA	-37	NA	54600244	54635981	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635767
ES_00037744	chr3	+	2891	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	3	-76	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_26	140.76788565982	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTGCTGTGTGTGCACA	NA	False	NA	NA	False	AATGAA	-37	NA	54600248	54635981	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635767
ES_00037745	chr3	+	2854	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	2	-107	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_6	104.992335589529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACTGTTTTCCCGAGA	NA	False	NA	NA	False	AATGAA	-6	NA	54600257	54635950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ES_00037746	chr3	+	2788	25	NIC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_14	131.166851969374	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600533	54636184	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ES_00037747	chr3	+	657	5	Antisense	novelGene_ENSMUSG00000056306.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.22474487139159	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGGCCATTCTCGTGTG	NA	False	NA	6	True	GATAAA	-18	NA	54794244	54807704	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_+_54794305_54794833_54794945_54796745_54796928_54797697_54797759_54807461
ES_00037749	chr3	+	526	1	FSM	ENSMUSG00000083538.2	ENSMUST00000120831.2	550	1	-222	246	-222	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAAATCTGGCACCCCA	1643	False	NA	NA	False	NA	NA	NA	57435430	57435956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_57435400_57436000
ES_00037750	chr3	+	2637	10	NIC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	45.5520323840878	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTTTGTTGAGTTTT	NA	False	NA	NA	False	AAGAAA	-42	NA	57643533	57742652	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703717_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ES_00037751	chr3	+	372	1	FSM	ENSMUSG00000027806.10	ENSMUST00000199784.2	3022	1	2208	442	602	-442	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCTTTGACATTACATAA	NA	False	NA	NA	False	NA	NA	NA	58325506	58325878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_58325500_58325900
ES_00037752	chr3	+	966	1	FSM	ENSMUSG00000103986.2	ENSMUST00000192177.2	966	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGAGGGGTGTGCTCGCC	NA	False	NA	NA	False	NA	NA	NA	59674695	59675661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_59674700_59675700
ES_00037754	chr3	+	1257	1	FSM	ENSMUSG00000027765.7	ENSMUST00000193943.2	2203	1	1009	-63	1009	63	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATGTTCATGTCTTTCA	NA	False	NA	NA	False	AATGAA	-39	NA	60911228	60912485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_60911200_60912500
ES_00037755	chr3	+	817	7	FSM	ENSMUSG00000027820.13	ENSMUST00000194836.6	921	7	104	0	-78	0	multi-exon	FALSE	canonical	3	270	junction_1	62.6810710395624	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGCACAACTGAATTCTAA	NA	False	NA	NA	False	NA	NA	NA	63202790	63235616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590
ES_00037757	chr3	+	262	1	FSM	ENSMUSG00000093447.2	ENSMUST00000175943.2	249	1	64	-77	64	77	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCGGCCCCCAACACTG	NA	False	NA	NA	False	NA	NA	NA	64070874	64071136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_64070900_64071100
ES_00037758	chr3	+	314	1	FSM	ENSMUSG00000098944.3	ENSMUST00000185035.3	139	1	20	-195	20	195	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGGGTGGGGCAGCCA	NA	False	NA	NA	False	NA	NA	NA	65566728	65567042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_65566700_65567000
ES_00037759	chr3	+	337	1	FSM	ENSMUSG00000103700.2	ENSMUST00000195167.2	789	1	448	4	448	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTGGTTTTTAATAAAGAT	NA	False	NA	NA	False	GGGGCT	-36	NA	66790130	66790467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_66790100_66790500
ES_00037760	chr3	+	1841	1	FSM	ENSMUSG00000103703.3	ENSMUST00000195639.3	1841	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTGAGCTATATCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	67384310	67386151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_67384300_67386200
ES_00037762	chr3	+	1123	1	FSM	ENSMUSG00000027777.16	ENSMUST00000182360.2	1989	1	190	676	190	-676	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTATGTGAGGCCCAGA	7576	False	NA	NA	False	NA	NA	NA	68503697	68504820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_68503700_68504800
ES_00037763	chr3	+	214	2	NNC	ENSMUSG00000103218.2	novel	1131	2	NA	NA	-1531	-401	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTAGACAATCTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	68751880	68754338	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_68751921_68754164
ES_00037764	chr3	+	3536	21	NIC	ENSMUSG00000034349.15	novel	4316	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	217.691633968786	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912302	68941956	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_68912424_68913408_68913547_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
ES_00037765	chr3	+	4056	1	ISM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	239884	2	7766	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTCCTTGAACTAAAC	NA	False	NA	23	True	ATTAAA	-26	NA	69464077	69468133	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_69464100_69468100
ES_00037766	chr3	+	494	6	FSM	ENSMUSG00000027787.15	ENSMUST00000143041.8	494	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	370.566377319907	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGGAGTTTCTTCAGGG	NA	False	NA	NA	False	AAAACA	-14	NA	69629364	69642422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_69629456_69629741_69629800_69636670_69636752_69637737_69637867_69638897_69638989_69642378
ES_00037768	chr3	+	1734	17	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	0	38416	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	241.163294004291	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGGCGAATCAGCCATCGT	NA	False	NA	NA	False	NA	NA	NA	69629422	69702122	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104_69656381_69702092
ES_00037770	chr3	+	6150	14	FSM	ENSMUSG00000033900.14	ENSMUST00000091014.10	6218	14	68	0	-30	0	multi-exon	TRUE	canonical	0	0	junction_6	2.99111109157286	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTAACTGACGTTTTT	NA	False	NA	5	True	AATAAA	-17	NA	82265446	82302575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_82265563_82266281_82266432_82267196_82267282_82270597_82270922_82278485_82278710_82281414_82281509_82284229_82284475_82286243_82286315_82287384_82287554_82289200_82289291_82290514_82290677_82290822_82290969_82291151_82291285_82298434
ES_00037771	chr3	+	1579	3	ISM	ENSMUSG00000028086.16	ENSMUST00000151410.2	4348	13	-889	113196	-679	-39018	5prime_fragment	FALSE	canonical	3	34	junction_2	7.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTGGTAAGTTAATCAT	NA	False	NA	NA	False	ATTAAA	-35	NA	84721895	84771793	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_84723077_84771270_84771319_84771443
ES_00037772	chr3	+	4073	13	FSM	ENSMUSG00000028086.16	ENSMUST00000107678.8	4073	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	32.4585205386129	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGCCTGTTTCTTCCACT	NA	False	NA	25	True	AATAAA	-19	NA	84771451	84886505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_84771508_84797401_84797560_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ES_00037774	chr3	+	520	2	FSM	ENSMUSG00000103408.2	ENSMUST00000193964.2	981	2	17	444	17	-444	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCAAACTTCGTAATGGG	9265	False	NA	NA	False	NA	NA	NA	86050080	86052408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_86050513_86052320
ES_00037775	chr3	+	9379	55	FSM	ENSMUSG00000028080.17	ENSMUST00000194759.6	9379	55	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	6.2351057095992	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAATA	NA	False	NA	NA	False	NA	NA	NA	86131986	86684263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_86132062_86132375_86132812_86192303_86192536_86192940_86193042_86198733_86198830_86202395_86202518_86202608_86202736_86203552_86203673_86205171_86205319_86211542_86211741_86211906_86212041_86217267_86217377_86217693_86217847_86222642_86222812_86225401_86225482_86226867_86226931_86227811_86227910_86231035_86231129_86232312_86232422_86233007_86233090_86234905_86235030_86235470_86235664_86255425_86256476_86257553_86257733_86258509_86258664_86259135_86259317_86260975_86261104_86261505_86261614_86263893_86264054_86267037_86267489_86275810_86275945_86279384_86279464_86280742_86280877_86283211_86283274_86302527_86302593_86325194_86325304_86352613_86352781_86439391_86439517_86447209_86447357_86449881_86450019_86513176_86513295_86515654_86515758_86522278_86522395_86526816_86526930_86548797_86548939_86549959_86550080_86571744_86571898_86622819_86622988_86644388_86644479_86648711_86648890_86653107_86653171_86658833_86658990_86664688_86664857_86680406_86680509_86683304
ES_00037776	chr3	+	6550	39	NIC	ENSMUSG00000041977.19	novel	5603	39	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_20	20.8896487242537	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCATTGTGGTTGTATGA	6178	False	NA	11	True	AAGAAA	-12	NA	87524891	87645340	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ES_00037777	chr3	+	6796	41	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_21	21.0653744329409	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCATTGTGGTTGTATGA	6178	False	NA	11	True	AAGAAA	-12	NA	87524891	87645340	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ES_00037778	chr3	+	1192	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAACAGAAGTCTTAAAA	NA	False	NA	15	True	AATAAA	-17	NA	87826861	87830968	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ES_00037781	chr3	+	4385	22	NNC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	18	0	intron_retention	FALSE	canonical	2	9	junction_5	77.786643485639	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTGCTGTGTCTTCT	NA	False	NA	13	True	AATAAA	-20	NA	88243635	88269645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252766_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
ES_00037782	chr3	+	286	2	FSM	ENSMUSG00000041423.17	ENSMUST00000123200.2	806	2	-22	542	-13	-542	multi-exon	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCCTCCTCTCAGAATCC	NA	False	NA	NA	False	NA	NA	NA	88271877	88272567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88271931_88272334
ES_00037785	chr3	+	4586	25	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	27	0	intron_retention	FALSE	canonical	3	23	junction_1	95.1426469249668	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGGCTGGAAATGAAGCG	937	False	NA	11	True	ATTAAA	-13	NA	88514992	88555355	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_88515247_88521813_88521932_88522788_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00037786	chr3	+	5831	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	-18	1480	intron_retention	FALSE	canonical	3	134	junction_1	52.3518768361218	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGTGAGTTGGGTGAT	8600	False	NA	NA	False	ATTAAA	-20	NA	88522655	88556839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ES_00037789	chr3	+	435	1	Intergenic	novelGene_2579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTAACTCTTAATTT	2808	False	NA	NA	False	NA	NA	NA	88589702	88590137	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88589700_88590100
ES_00037791	chr3	+	1926	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198078.2	1922	14	-4	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	104.955555541635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGCATAACATCCGTTA	9	True	NA	NA	False	CATAAA	-33	NA	88593139	88619310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
ES_00037793	chr3	+	2573	6	FSM	ENSMUSG00000028057.15	ENSMUST00000170377.8	2573	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	25.7868183380579	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAGGTGTCAGATTTTT	2273	False	NA	NA	False	AATACA	-9	NA	88624200	88638348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633487_88633586_88633779_88636418
ES_00037794	chr3	+	12722	49	Fusion	ENSMUSG00000078684.9_ENSMUSG00000054199.19	novel	6190	19	NA	NA	-3	-596	multi-exon	FALSE	canonical	0	0	junction_8	93.4340207453307	121	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGGTGAAGACCCTACAA	NA	False	NA	NA	False	NA	NA	NA	88682519	88816810	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88702770_88702795_88706921_88707026_88715213_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88729107_88730848_88731105_88744296_88744828_88753694_88753887_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777151_88783213_88783238_88787377_88787482_88794212_88794412_88794865_88794953_88796981_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ES_00037795	chr3	+	1424	4	ISM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	46548	-749	46548	749	3prime_fragment	FALSE	canonical	3	272	junction_3	35.9845645921816	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATACCTACTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88729070	88733643	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_88729107_88730848_88731105_88731656_88731842_88732696
ES_00037796	chr3	+	7739	19	ISM	ENSMUSG00000054199.19	ENSMUST00000081695.15	7587	33	42185	593	-12413	-593	3prime_fragment	FALSE	canonical	0	0	junction_2	98.7809023377832	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAAGACCCTACAAGCC	9472	False	NA	NA	False	NA	NA	NA	88784722	88816813	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ES_00037797	chr3	+	5245	19	NNC	ENSMUSG00000054199.19	novel	4083	6	NA	NA	-9496	-593	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	106.201067163502	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAAGACCCTACAAGCC	NA	False	NA	NA	False	NA	NA	NA	88787639	88816813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_88787905_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ES_00037800	chr3	+	207	2	Intergenic	novelGene_2587	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGTTTTTAATGATGG	NA	False	NA	NA	False	NA	NA	NA	89027523	89034612	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89027555_89034436
ES_00037801	chr3	+	4215	21	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2128	13	NA	NA	-23	0	multi-exon	TRUE	canonical	3	115	junction_2	323.459178259019	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACCCATTTCCTGTAT	NA	False	NA	16	True	ATTAAA	-20	NA	89072078	89090070	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_89072414_89074341_89074512_89076004_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ES_00037803	chr3	+	255	1	Intergenic	novelGene_2589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACTAACTCACATCATT	NA	False	NA	NA	False	NA	NA	NA	89078799	89079054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89078800_89079100
ES_00037805	chr3	+	709	4	NNC	ENSMUSG00000042737.10	novel	404	2	NA	NA	-7788	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	252.672823143993	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	NA	False	NA	17	True	ATTAAA	-18	NA	89158876	89174384	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_89158940_89164367_89164421_89173669_89173914_89174035
ES_00037806	chr3	+	2928	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325903	89337322	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ES_00037807	chr3	+	8215	14	Fusion	ENSMUSG00000042626.14_ENSMUSG00000047824.14	novel	3154	13	NA	NA	-244	0	intron_retention	FALSE	canonical	3	239	junction_12	114.230277129217	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGACTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	89327695	89342435	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623_89338037_89338433_89338484_89339756
ES_00037808	chr3	+	391	2	Intergenic	novelGene_2591	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTGGCTGTGTTGTCT	2405	False	NA	NA	False	NA	NA	NA	89398120	89402840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89398206_89402534
ES_00037810	chr3	+	6811	7	NNC	ENSMUSG00000046280.10	novel	5733	6	NA	NA	-1203	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	21.0844861344913	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACAGTCATTTGCTTT	1676	False	NA	23	True	AATAAA	-11	NA	89737473	89766141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_89739411_89741450_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837_89764487_89764611
ES_00037811	chr3	+	1485	6	NIC	ENSMUSG00000027942.18	novel	2510	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	194.418517636567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATCATTTCTTTAGAGTG	NA	False	NA	10	True	AATAAA	-20	NA	89960131	89969752	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_89960427_89960814_89960917_89963835_89963890_89965791_89965959_89966048_89966108_89968944
ES_00037812	chr3	+	2107	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_6	1170.69368935077	210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	13	True	AATAAA	-16	NA	89986960	90008203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997320_89997387_90006834
ES_00037813	chr3	+	762	1	FSM	ENSMUSG00000027935.15	ENSMUST00000198809.2	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGACACGTGCATTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90121016	90121778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_90121000_90121800
ES_00037814	chr3	+	342	2	ISM	ENSMUSG00000027936.19	ENSMUST00000136970.8	2214	10	-17	4628	0	0	5prime_fragment	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTGGCCCCAGGGAGTA	NA	False	NA	NA	False	NA	NA	NA	90161630	90166799	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_90161866_90166692
ES_00037815	chr3	+	2622	15	NIC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	8	-1	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	35.6648228908645	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTTGTGTGCTTGGCTA	NA	False	NA	NA	False	AATAAA	-13	NA	90161655	90171426	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170220_90170288_90170477_90170665_90170786
ES_00037818	chr3	+	1796	1	FSM	ENSMUSG00000001016.13	ENSMUST00000197644.2	3167	1	1257	114	1240	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCACTTGGGAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	90384703	90386499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_90384700_90386500
ES_00037819	chr3	+	904	4	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-1149	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	161.897772958398	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTTATTTATTTATTT	NA	False	NA	18	True	AATAAA	-23	NA	90420592	90431891	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_90420813_90422067_90422327_90423156_90423350_90431659
ES_00037820	chr3	+	970	4	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-711	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	161.897772958398	75	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTTATTTATTTATTT	NA	False	NA	18	True	AATAAA	-23	NA	90421030	90431891	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_90421410_90422160_90422327_90423156_90423350_90431659
ES_00037821	chr3	+	1583	1	FSM	ENSMUSG00000096879.3	ENSMUST00000195847.2	1451	1	384	-516	354	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	487	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	92981227	92982810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_92981200_92982800
ES_00037822	chr3	+	1316	2	Intergenic	novelGene_2607	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTTTAAGACATCTTT	NA	False	NA	NA	False	NA	NA	NA	93619772	93621124	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93620946_93620981
ES_00037823	chr3	+	1209	1	FSM	ENSMUSG00000104059.2	ENSMUST00000191789.2	1092	1	521	-638	521	638	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGATTCTAGAGATGT	9621	False	NA	NA	False	AATAAA	-15	NA	93917758	93918967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_93917800_93919000
ES_00037824	chr3	+	261	2	Intergenic	novelGene_2612	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGACCATAAAACTGTTC	NA	False	NA	NA	False	NA	NA	NA	94016434	94020435	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_94016629_94020368
ES_00037825	chr3	+	1212	6	FSM	ENSMUSG00000028148.12	ENSMUST00000029794.11	1251	6	39	0	39	0	multi-exon	FALSE	canonical	0	0	junction_3	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTAGTTGATTCTTTTAG	NA	False	NA	NA	False	TTTAAA	-5	NA	94249444	94254659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94249689_94250561_94250764_94251715_94251855_94253455_94253567_94253854_94253980_94254268
ES_00037828	chr3	+	4367	9	FSM	ENSMUSG00000005774.13	ENSMUST00000107253.8	4367	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	4.47213595499958	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCCTTATGTTTCTTT	NA	False	NA	4	True	NA	NA	NA	94861536	94868660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_94861563_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092
ES_00037829	chr3	+	1276	1	NIC	ENSMUSG00000085956.2	novel	1089	2	NA	NA	127	-49	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTCCCTAAACCTATTGT	NA	False	NA	NA	False	NA	NA	NA	94923062	94924338	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_94923100_94924300
ES_00037830	chr3	+	203	1	Genic_Genomic	ENSMUSG00000008958.15	novel	NA	NA	NA	NA	-42	-1691	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTCCAGCCCCTCCTTT	8022	False	NA	NA	False	NA	NA	NA	95023794	95023997	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_95023800_95024000
ES_00037831	chr3	+	509	4	FSM	ENSMUSG00000005628.13	ENSMUST00000149898.2	669	4	151	9	151	-6	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCACGCCGCCTGTCTCC	2327	False	NA	NA	False	AATAAA	-9	NA	95035114	95036510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95035223_95035579_95035724_95035910_95036056_95036398
ES_00037832	chr3	+	556	4	FSM	ENSMUSG00000038777.20	ENSMUST00000131742.8	549	4	-7	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	6.48074069840786	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACCCCTCTGTTGACCT	NA	False	NA	NA	False	NA	NA	NA	95067804	95071792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95068024_95069925_95069975_95070437_95070583_95071649
ES_00037833	chr3	+	3830	19	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	27.5562835925329	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATCAGCAAGTCTTGTC	NA	False	NA	17	True	AATAAA	-26	NA	95067816	95081333	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95068014_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ES_00037834	chr3	+	4304	18	ISM	ENSMUSG00000038777.20	ENSMUST00000142449.9	3936	19	1	-1	1	1	intron_retention	FALSE	canonical	1	1	junction_5	29.3242226598094	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGCAAGTCTTGTCCTA	NA	False	NA	20	True	AATAAA	-29	NA	95067816	95081336	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95075038_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101
ES_00037835	chr3	+	3343	11	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	7	0	intron_retention	TRUE	canonical	3	5	junction_1	53.6918057062714	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTTGCGTTCCTACCT	NA	False	NA	10	True	AATAAA	-11	NA	95188662	95203472	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_95188923_95189993_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ES_00037836	chr3	+	2624	11	NNC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	41	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	55.015997673404	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGATTTGCGTTCCT	NA	False	NA	6	True	AATAAA	-7	NA	95190295	95203468	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_95190389_95190541_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ES_00037838	chr3	+	743	8	FSM	ENSMUSG00000015714.12	ENSMUST00000129267.8	775	8	32	0	32	0	multi-exon	FALSE	canonical	2	2	junction_1	163.775730179775	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCCTGGTTTGCCAATT	4057	False	NA	NA	False	NA	NA	NA	95222133	95229191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95222214_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141
ES_00037839	chr3	+	668	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-339	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	75.8463358816144	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATGATGAAGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	95334642	95337749	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_95334711_95334827_95335007_95335864_95336134_95337597
ES_00037840	chr3	+	5611	19	Fusion	ENSMUSG00000028109.15_ENSMUSG00000046519.16	novel	1444	16	NA	NA	-49	0	intron_retention	FALSE	canonical	3	50	junction_17	109.453820805346	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGTTCTCTCTGTACA	NA	False	NA	3	True	AATAAA	-14	NA	95466938	95526552	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ES_00037841	chr3	+	1445	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	-1	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466987	95494907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
ES_00037842	chr3	+	1411	15	NNC	ENSMUSG00000028109.15	novel	1437	15	NA	NA	7	346	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_14	88.6413318620931	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCATTTCTCCAATTTT	NA	False	NA	20	True	ATTAAA	-12	NA	95466995	95493455	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493210
ES_00037843	chr3	+	5666	20	Fusion	ENSMUSG00000028109.15_ENSMUSG00000046519.16	novel	1511	16	NA	NA	11	0	intron_retention	TRUE	canonical	3	21	junction_2	126.279994928387	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGTTCTCTCTGTACA	NA	False	NA	3	True	AATAAA	-14	NA	95466999	95526552	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_+_95467035_95467121_95467247_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ES_00037844	chr3	+	2668	4	ISM	ENSMUSG00000046519.16	ENSMUST00000176541.2	2053	5	1	4	1	-3	intron_retention	FALSE	canonical	1	3	junction_3	29.7097066068763	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTACCTCTGTTCTCTCTG	NA	False	NA	-1	True	AATAAA	-10	NA	95496292	95526548	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_95496446_95499027_95499217_95515216_95515349_95524354
ES_00037845	chr3	+	1163	1	FSM	ENSMUSG00000105460.2	ENSMUST00000198013.2	1604	1	1583	-1142	1583	1142	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGAATGACAACATTAAC	1130	False	NA	NA	False	ACTAAA	-36	NA	95497864	95499027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95497900_95499000
ES_00037846	chr3	+	360	1	FSM	ENSMUSG00000106383.2	ENSMUST00000200640.2	1742	1	323	1059	323	-1059	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCATATCAAATCAAGAAAA	138	False	NA	NA	False	NA	NA	NA	95546937	95547297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_95546900_95547300
ES_00037847	chr3	+	543	1	FSM	ENSMUSG00000064220.7	ENSMUST00000078756.7	586	1	41	2	41	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1514	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCGGTCTTGGTGGCCTT	NA	False	NA	NA	False	GATAAA	-15	NA	96152853	96153396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96152900_96153400
ES_00037848	chr3	+	3030	9	NNC	ENSMUSG00000038393.15	novel	2795	8	NA	NA	-4222	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	168.22562044766	213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96461050	96469173	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_96461109_96465098_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ES_00037850	chr3	+	2750	10	FSM	ENSMUSG00000028098.14	ENSMUST00000199051.5	2742	10	-8	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	296.671701996385	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAAATAAAAAAG	4795	False	NA	NA	False	NA	NA	NA	96634979	96698954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96667023_96667079_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
ES_00037852	chr3	+	2457	1	FSM	ENSMUSG00000028093.16	ENSMUST00000198329.2	3291	1	113	721	113	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGCCTGTGTGTAAAA	NA	False	NA	15	True	NA	NA	NA	97081437	97083894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_97081400_97083900
ES_00037853	chr3	+	378	1	FSM	ENSMUSG00000105004.2	ENSMUST00000198613.2	3905	1	-88	3615	-88	-3615	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCAGAGGGCGCAGCTC	NA	False	NA	NA	False	NA	NA	NA	97517159	97517537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_97517200_97517500
ES_00037854	chr3	+	4396	3	FSM	ENSMUSG00000038205.13	ENSMUST00000132719.2	3633	3	-55	-708	-55	1	multi-exon	FALSE	canonical	3	81	junction_2	3	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGAGTTACTTACTGATT	NA	False	NA	NA	False	AATAAA	-21	NA	97573790	97581129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_97574032_97574674_97574744_97577043
ES_00037855	chr3	+	2780	5	FSM	ENSMUSG00000027879.10	ENSMUST00000130778.2	1355	5	0	-1425	0	0	multi-exon	FALSE	canonical	3	31	junction_1	133.810500335362	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGTGTGAAGTTCTGT	NA	False	NA	18	True	AATAAA	-17	NA	97808531	97830592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
ES_00037856	chr3	+	4983	26	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	15	12761	15	-12761	5prime_fragment	FALSE	canonical	2	4	junction_15	4.66476151587624	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGGAGCAGGAGCAGGAG	NA	False	NA	NA	False	NA	NA	NA	97920868	98044916	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_97921088_97955043_97955126_97978175_97978436_97979902_97980239_97989232_97989356_98005411_98005646_98006739_98006896_98007515_98007705_98008836_98008951_98009641_98009756_98011664_98011899_98014362_98014474_98018865_98019059_98020325_98020472_98022547_98022662_98024016_98024137_98024508_98024662_98028042_98028272_98029219_98029422_98031060_98031215_98031464_98031650_98033427_98033561_98038513_98038751_98041874_98041988_98042641_98043148_98044590
ES_00037857	chr3	+	5433	8	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	124892	-3	124892	3	3prime_fragment	FALSE	canonical	3	9	junction_2	2.97609523657138	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGATAGCCTACTGTGC	657	False	NA	8	True	AATAAA	-20	NA	98045745	98057680	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_98045845_98045957_98046169_98046901_98046999_98048779_98048946_98050208_98050511_98051677_98051826_98052437_98052536_98053368
ES_00037858	chr3	+	727	1	FSM	ENSMUSG00000082185.2	ENSMUST00000119844.2	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTTCAGGTCCCTGGC	NA	False	NA	NA	False	NA	NA	NA	98728353	98729080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_98728400_98729100
ES_00037860	chr3	+	226	1	FSM	ENSMUSG00000081569.2	ENSMUST00000120255.2	560	1	219	115	219	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	498	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGGAAAACTGCAGGAAG	NA	False	NA	NA	False	NA	NA	NA	101168451	101168677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_101168500_101168700
ES_00037861	chr3	+	7454	12	NNC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	20.256618141052	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGCCACATGCTGAAAT	228	False	NA	16	True	NA	NA	NA	101284374	101370377	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340233_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
ES_00037862	chr3	+	3101	20	NNC	ENSMUSG00000068823.11	novel	2584	14	NA	NA	-4445	-204	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4722.66925908939	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCACAATCCACTTAACG	NA	False	NA	NA	False	NA	NA	NA	102923296	102964814	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_102923324_102936416_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ES_00037864	chr3	+	1920	7	FSM	ENSMUSG00000027852.15	ENSMUST00000196355.5	1920	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	289.934714873692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACCATATCCCGTGTGT	NA	False	NA	NA	False	ATTAAA	-36	NA	102966218	102973792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102971877_102972834
ES_00037865	chr3	+	311	2	Genic_Genomic	ENSMUSG00000104671.2	novel	1319	1	NA	NA	-8	14336	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGCTTTTAAAGACAGG	NA	False	NA	NA	False	NA	NA	NA	102978481	102994144	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_+_102978513_102993864
ES_00037866	chr3	+	5124	19	NNC	ENSMUSG00000007379.16	novel	3578	14	NA	NA	96	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	64.7229613691699	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	NA	False	NA	NA	False	GATAAA	-9	NA	103010071	103077047	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_103010319_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ES_00037870	chr3	+	233	1	FSM	ENSMUSG00002076048.1	ENSMUST00020182613.1	102	1	45	-176	45	176	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGATGTCTTCACTTGG	NA	False	NA	NA	False	AAAACA	-19	NA	103999741	103999974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_103999700_1.04e+08
ES_00037871	chr3	+	2941	9	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	-3	0	intron_retention	TRUE	canonical	3	11	junction_1	31.9168842464298	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688368	104693334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_104689842_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692559_104692713
ES_00037874	chr3	+	286	1	FSM	ENSMUSG00000027901.13	ENSMUST00000195305.2	2125	1	70	1769	70	-1769	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCCAATGAGCAGATCTAC	NA	False	NA	NA	False	NA	NA	NA	106400560	106400846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_106400600_106400800
ES_00037876	chr3	+	2346	9	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	12	135	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	37.0506410200957	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCCCAGCACTTGGGA	NA	False	NA	NA	False	ATTAAA	-36	NA	106455125	106482296	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_106455237_106459471_106459597_106462482_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ES_00037878	chr3	+	3126	5	NNC	ENSMUSG00000056260.16	novel	3103	4	NA	NA	0	469	intron_retention	FALSE	non_canonical	0	0	junction_4	15.0166574176812	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	106629240	106644362	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720_106643889_106644348
ES_00037879	chr3	+	436	1	FSM	ENSMUSG00000049231.7	ENSMUST00000138778.2	237	1	-116	-83	-116	83	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTTAAAAAAAAAAAAACAA	895	False	NA	NA	False	AATAAA	-15	NA	107886831	107887267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_107886800_107887300
ES_00037880	chr3	+	2442	15	ISM	ENSMUSG00000068747.15	ENSMUST00000135636.6	6836	21	15	12306	6	-12301	5prime_fragment	FALSE	canonical	3	21	junction_7	9.86050667241469	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTAATCCCAGCACGTG	4995	False	NA	NA	False	NA	NA	NA	108191412	108256453	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241881_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883
ES_00037882	chr3	+	6749	18	NNC	ENSMUSG00000033386.11	novel	2377	17	NA	NA	-206	-463	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	108.927994374621	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTAGCACTGTTCCTAT	NA	False	NA	17	True	AATAAA	-25	NA	116652906	116701363	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_116653284_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698134_116698203
ES_00037883	chr3	+	2632	16	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	1628	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	74.6183176795975	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116654843	116697127	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_116655359_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
ES_00037894	chr3	+	2648	13	FSM	ENSMUSG00000028032.14	ENSMUST00000199878.5	2648	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.8531484588242	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGGTTTGTGTGCATA	NA	False	NA	6	True	AATAAA	-17	NA	131270656	131349431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_131270745_131273262_131273440_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ES_00037904	chr3	+	224	2	Antisense	novelGene_ENSMUSG00000068547.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATTCCTTCCTAATCTG	NA	False	NA	NA	False	NA	NA	NA	144630611	144662767	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_+_144630641_144662572
ES_00037905	chr3	+	2143	15	NNC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	31.2253984795083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824622	144859650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_144824690_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ES_00037906	chr3	+	1188	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145282023	145309868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ES_00037908	chr3	+	3464	14	NNC	ENSMUSG00000036825.13	novel	3410	14	NA	NA	2	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	61.1242792578604	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGAAGCCTTGTGTTGTC	NA	False	NA	15	True	ATTAAA	-17	NA	146110420	146145892	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_+_146110592_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
ES_00037909	chr3	+	543	3	FSM	ENSMUSG00000068523.13	ENSMUST00000119130.2	593	3	50	0	50	0	multi-exon	FALSE	canonical	2	51	junction_1	1761	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205913	146211303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_146206102_146209014_146209155_146211088
ES_00037913	chr3	+	463	3	FSM	ENSMUSG00000025437.16	ENSMUST00000142969.2	460	3	-3	0	0	0	multi-exon	FALSE	canonical	3	520	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTCAAACTTTGGATGG	NA	False	NA	NA	False	ACTAAA	-6	NA	152052148	152063985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_+_152052277_152063476_152063609_152063782
ES_00037920	chr3	+	2582	14	NIC	ENSMUSG00000063052.10	novel	2701	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_2	190.962278254048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742386	157772726	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ES_00037923	chr3	-	2338	7	NNC	ENSMUSG00000027506.16	novel	3081	7	NA	NA	0	44914	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1236.9164280581	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGCTATCTTGGTTTT	NA	False	NA	2	True	AATAAA	-42	NA	9069538	8945738	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_8946009_8994656_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ES_00037924	chr3	-	704	1	FSM	ENSMUSG00000081657.2	ENSMUST00000122299.2	333	1	-26	-345	-26	345	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCCTTCCTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	8947656	8946952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_8947000_8947700
ES_00037925	chr3	-	7097	5	NIC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	1	-3	intron_retention	FALSE	canonical	3	1409	junction_1	611.345391329648	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGGTTCTTTTTTATGT	NA	False	NA	NA	False	AATAAA	-14	NA	9069782	8993688	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ES_00037928	chr3	-	287	3	FSM	ENSMUSG00000027508.16	ENSMUST00000163022.2	625	3	0	338	0	-338	multi-exon	FALSE	canonical	3	3	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTGGCCGTCATAGGA	NA	False	NA	NA	False	NA	NA	NA	9898423	9817471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_9817547_9852321_9852381_9898270
ES_00037929	chr3	-	632	4	FSM	ENSMUSG00000062515.4	ENSMUST00000029041.6	896	4	11	253	-7	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATGATACTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	10273625	10269400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10269631_10270300_10270403_10271009_10271183_10273498
ES_00037930	chr3	-	2033	8	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	222	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	285.452236971156	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAGACTCTAAATTCATT	NA	False	NA	NA	False	CATAAA	-21	NA	10416374	10404790	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_10405963_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
ES_00037931	chr3	-	4685	2	FSM	ENSMUSG00000039795.15	ENSMUST00000125734.2	4685	2	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10409787	10405014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_10405966_10406053
ES_00037932	chr3	-	798	2	FSM	ENSMUSG00000069094.13	ENSMUST00000141621.2	798	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAGGAAGATGATGTTTT	5846	False	NA	NA	False	NA	NA	NA	19284192	19281548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_19282006_19283851
ES_00037933	chr3	-	3647	16	NIC	ENSMUSG00000027615.15	novel	4016	17	NA	NA	2	-2	intron_retention	FALSE	canonical	3	6	junction_3	13.8490272422129	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATCTGTCTAATAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	20089442	20050332	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_20051194_20056486_20056578_20057388_20057596_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ES_00037934	chr3	-	1936	8	NNC	ENSMUSG00000019528.19	novel	1922	7	NA	NA	-144	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	22.134099650696	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGTTGTTTAAGTACTT	NA	False	NA	-2	True	AATAAA	-15	NA	20209625	20176247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161_20209436_20209565
ES_00037935	chr3	-	4039	26	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	0	16290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	160.197208465067	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCAATTTGATATGCTTC	1906	False	NA	NA	False	AATAAA	-42	NA	27207931	27135080	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_27135099_27151370_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ES_00037936	chr3	-	4117	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_24	156.17538218298	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1889	False	NA	NA	False	AATAAA	-19	NA	27207948	27151371	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207771
ES_00037937	chr3	-	6974	26	NNC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_24	21.1676734668692	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGTAGGGTTCTTCAGC	NA	False	NA	-24	True	AATAAA	-19	NA	27765456	27470309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27514093_27514200_27515824_27515944_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697095_27697239_27765268
ES_00037938	chr3	-	4573	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	0	2963	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	17.8985858379929	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGCTTTTTTTCTTGT	NA	False	NA	0	True	AATAAA	-15	NA	30753979	30730243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745474_30749635_30749780_30753847
ES_00037939	chr3	-	488	1	FSM	ENSMUSG00000074653.11	ENSMUST00000194840.2	1822	1	535	799	535	-624	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGAATGCCATTTTTTT	NA	False	NA	NA	False	AATACA	-13	NA	30753382	30752894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_30752900_30753400
ES_00037940	chr3	-	314	1	FSM	ENSMUSG00000104361.2	ENSMUST00000194035.2	268	1	-74	28	-74	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAGAAGAGAAGGC	NA	False	NA	NA	False	AAAAAG	-33	NA	30883055	30882741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_30882700_30883100
ES_00037941	chr3	-	3016	15	FSM	ENSMUSG00000037652.16	ENSMUST00000129817.9	3019	15	3	0	3	0	multi-exon	FALSE	canonical	1	3	junction_1	3.2919196062294	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATTCCTCTCACAAGGT	NA	False	NA	NA	False	NA	NA	NA	31023545	30961459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_30961640_30968243_30968476_30968566_30968700_30970751_30970867_30976345_30976506_30983961_30984213_30985887_30986042_30990433_30991306_30996557_30996802_31002850_31002950_31005024_31005181_31012157_31012236_31015876_31016033_31019921_31020085_31023522
ES_00037942	chr3	-	8320	6	NIC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	145	-2	intron_retention	FALSE	canonical	3	21	junction_5	41.5855744219074	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCGTTCGGTTCTGA	NA	False	NA	-6	True	AATAAA	-20	NA	32420018	32388946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419314
ES_00037944	chr3	-	913	8	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	373	54548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	259.48347436665	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CGAAAGAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	32790923	32724997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_32725023_32781648_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ES_00037945	chr3	-	242	1	FSM	ENSMUSG00000105135.2	ENSMUST00000198616.2	1095	1	544	309	544	-309	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGTATACCTCAACTAAG	NA	False	NA	NA	False	NA	NA	NA	34109034	34108792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_34108800_34109000
ES_00037946	chr3	-	784	5	NNC	ENSMUSG00000105153.5	novel	580	5	NA	NA	14821	884	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	5.19615242270663	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGTATTCCTAGTTATT	5435	False	NA	NA	False	NA	NA	NA	34755988	34752904	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_34753101_34753548_34753827_34754967_34755092_34755525_34755649_34755925
ES_00037947	chr3	-	1213	7	NNC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	430	6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	14.0564338768172	126	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAGACTCCAATGTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	35691284	35672765	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_35673025_35673834_35673956_35677231_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
ES_00037949	chr3	-	464	1	FSM	ENSMUSG00000105095.2	ENSMUST00000199608.2	822	1	206	152	206	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACATTCCTGAATAAGCAA	NA	False	NA	NA	False	NA	NA	NA	36010200	36009736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_36009700_36010200
ES_00037951	chr3	-	418	3	FSM	ENSMUSG00000058400.14	ENSMUST00000197275.2	853	3	73	362	73	-362	multi-exon	FALSE	canonical	1	2	junction_1	0.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCCTCGAGGTATTCAGG	NA	False	NA	NA	False	NA	NA	NA	36276256	36242315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_36242367_36243600_36243760_36276048
ES_00037952	chr3	-	699	1	FSM	ENSMUSG00000050533.4	ENSMUST00000056409.4	598	1	-173	72	-173	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGTCCAGCCAAGGAGC	NA	False	NA	NA	False	AATAGA	-26	NA	39413225	39412526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_39412500_39413200
ES_00037954	chr3	-	2625	3	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	0	-1439	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGGACTCTTAACTGTG	NA	False	NA	NA	False	TTTAAA	-4	NA	41447625	41439897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41440396_41442147_41444172_41447522
ES_00037955	chr3	-	2622	3	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	0	-1439	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGGACTCTTAACTGTG	NA	False	NA	NA	False	TTTAAA	-4	NA	41447625	41439897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41440396_41442147_41444169_41447522
ES_00037956	chr3	-	1121	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	10	14452	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	43.6942501938184	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATTATACTGTTCTAGT	NA	False	NA	NA	False	AAAAAG	-4	NA	41482869	41461229	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477565_41482833
ES_00037957	chr3	-	376	1	FSM	ENSMUSG00000103823.2	ENSMUST00000192935.2	1897	1	1535	-14	1535	14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTGTAGCATTGTTCCAC	NA	False	NA	NA	False	NA	NA	NA	41930948	41930572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_41930600_41930900
ES_00037958	chr3	-	739	1	FSM	ENSMUSG00000104083.2	ENSMUST00000191760.2	529	1	159	-369	159	369	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACCTGCTTTCCCAAC	NA	False	NA	NA	False	NA	NA	NA	43719040	43718301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_43718300_43719000
ES_00037959	chr3	-	259	1	FSM	ENSMUSG00000104491.2	ENSMUST00000192883.2	259	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGCTTGTTGAAACACA	NA	False	NA	NA	False	NA	NA	NA	45730626	45730367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_45730400_45730600
ES_00037960	chr3	-	2613	6	ISM	ENSMUSG00000027737.11	ENSMUST00000029297.6	9223	12	59460	5453	-13352	-542	3prime_fragment	FALSE	canonical	2	6	junction_1	0.4	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATCAACGGAGAGACACT	NA	False	NA	NA	False	NA	NA	NA	50338600	50324839	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_50326816_50332012_50332191_50333483_50333634_50335420_50335518_50336323_50336428_50338492
ES_00037961	chr3	-	2097	1	FSM	ENSMUSG00000027737.11	ENSMUST00000193838.2	2677	1	4	576	4	-576	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTCAGATAAGCAAGGAG	8841	False	NA	NA	False	ATTAAA	-18	NA	50398050	50395953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_50396000_50398000
ES_00037962	chr3	-	621	1	FSM	ENSMUSG00000104241.2	ENSMUST00000194242.2	319	1	-125	-177	-125	177	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTTTTTTTTTCTTAA	NA	False	NA	NA	False	AATAAA	-22	NA	51310708	51310087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51310100_51310700
ES_00037964	chr3	-	411	1	FSM	ENSMUSG00000037111.10	ENSMUST00000194828.2	2638	1	1617	610	1617	-610	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCAAATTGGTTGTATT	NA	False	NA	NA	False	NA	NA	NA	51457124	51456713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_51456700_51457100
ES_00037966	chr3	-	6781	23	NNC	ENSMUSG00000037016.12	novel	12348	24	NA	NA	-45559	0	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_22	5.96338691274299	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTGTTTTTTTAATAT	NA	False	NA	-3	True	AATAAA	-18	NA	53497248	53421358	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_53422160_53422191_53424463_53426973_53427121_53427324_53427513_53428427_53428555_53429454_53429590_53429672_53429801_53431083_53431189_53433179_53433373_53442585_53442918_53443144_53443277_53444643_53444948_53446584_53446744_53448391_53448523_53451695_53451879_53452778_53452944_53455030_53455229_53457004_53457215_53458731_53458882_53479705_53479958_53481951_53482078_53492906_53493138_53497135
ES_00037968	chr3	-	3186	1	FSM	ENSMUSG00000104831.2	ENSMUST00000197444.2	1688	1	-48	-1450	-48	1450	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGTGCCCATGTGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	54542037	54538851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54538900_54542000
ES_00037969	chr3	-	481	2	FSM	ENSMUSG00000027752.16	ENSMUST00000125632.2	478	2	0	-3	0	0	multi-exon	FALSE	canonical	3	2232	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54636879	54636098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_54636315_54636614
ES_00037971	chr3	-	387	2	FSM	ENSMUSG00000027799.13	ENSMUST00000198315.2	833	2	0	446	0	-446	multi-exon	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTTTAAAAAATTATTTT	NA	False	NA	NA	False	AATATA	-3	NA	55912051	55910072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_55910363_55911954
ES_00037972	chr3	-	545	1	FSM	ENSMUSG00000105389.2	ENSMUST00000198619.2	1176	1	37	594	37	-594	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTTTCTAGAAAAGATGT	NA	False	NA	NA	False	NA	NA	NA	57562963	57562418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_57562400_57563000
ES_00037973	chr3	-	587	2	Genic_Genomic	ENSMUSG00000104623.2	novel	477	1	NA	NA	0	51742	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGATTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	57625710	57573491	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_57573528_57625159
ES_00037974	chr3	-	10062	7	FSM	ENSMUSG00000036334.13	ENSMUST00000039419.12	10084	7	0	22	0	-22	multi-exon	TRUE	canonical	0	0	junction_2	1.10554159678513	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCTTCATGTGCAAAATG	NA	False	NA	NA	False	AATAAA	-26	NA	59251677	59224177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_59227796_59232855_59233757_59235204_59239465_59243617_59244009_59247096_59247227_59248559_59248755_59251110
ES_00037975	chr3	-	977	1	FSM	ENSMUSG00000102564.2	ENSMUST00000194809.2	2148	1	29	1142	29	-1142	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCCAGGCTCCCAGCG	NA	False	NA	NA	False	NA	NA	NA	60911178	60910201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_60910200_60911200
ES_00037976	chr3	-	1740	1	FSM	ENSMUSG00000103473.2	ENSMUST00000194223.2	3349	1	639	970	639	-970	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCTCTTCACTTGATC	NA	False	NA	NA	False	NA	NA	NA	61268679	61266939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_61266900_61268700
ES_00037977	chr3	-	971	1	FSM	ENSMUSG00000098208.2	ENSMUST00000182720.2	1003	1	228	-196	228	196	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAGAAAGAAACT	NA	False	NA	NA	False	AATAAA	-30	NA	61370054	61369083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_61369100_61370100
ES_00037978	chr3	-	519	2	Genic_Genomic	ENSMUSG00000063001.11	novel	427	1	NA	NA	-11	2625	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGGTAAATGATCA	NA	False	NA	NA	False	NA	NA	NA	62831665	62828602	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_62828635_62831178
ES_00037979	chr3	-	516	2	Genic_Genomic	ENSMUSG00000063001.11	novel	427	1	NA	NA	-11	2625	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGGTAAATGATCA	NA	False	NA	NA	False	NA	NA	NA	62831665	62828602	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr3_-_62828632_62831178
ES_00037980	chr3	-	6587	25	NNC	ENSMUSG00000036834.17	novel	6010	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	6.30255680039635	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATTTTGTTTATAAAAC	NA	False	NA	NA	False	ATTAAA	-19	NA	63806794	63603654	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_63606902_63609204_63609560_63611554_63611635_63611937_63612085_63615137_63615223_63616941_63617067_63618384_63618493_63618588_63618769_63623404_63623503_63626608_63626704_63628593_63628666_63630170_63630333_63639037_63639146_63648043_63648216_63651899_63652021_63660548_63660753_63662672_63662767_63674877_63675049_63681061_63681190_63688730_63688977_63691411_63691559_63778076_63778196_63792291_63792382_63793348_63793435_63806647
ES_00037981	chr3	-	3903	4	FSM	ENSMUSG00000027828.13	ENSMUST00000119896.2	1469	4	-59	-2375	11	0	multi-exon	FALSE	canonical	3	545	junction_3	65.0281990114033	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2727	False	NA	-1	True	ATTAAA	-20	NA	65300033	65287075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_65290545_65295152_65295252_65298745_65298873_65299825
ES_00037984	chr3	-	289	1	FSM	ENSMUSG00000091315.2	ENSMUST00000164501.2	541	1	10	242	10	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCTGAACTTAAGGGTT	NA	False	NA	NA	False	AAAAAG	-42	NA	69227908	69227619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_69227600_69227900
ES_00037985	chr3	-	1041	1	FSM	ENSMUSG00000098006.2	ENSMUST00000183259.2	1014	1	-98	71	-98	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATACCACCTGGTATACC	NA	False	NA	NA	False	GGGGCT	-24	NA	69474895	69473854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_69473900_69474900
ES_00037986	chr3	-	408	1	FSM	ENSMUSG00000068969.4	ENSMUST00000091052.4	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTTGTGTACATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	69624726	69624318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_69624300_69624700
ES_00037987	chr3	-	926	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	92.8906166771793	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563032	75554752	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562962
ES_00037988	chr3	-	1817	1	FSM	ENSMUSG00000034109.16	ENSMUST00000192433.2	1816	1	-3	2	-3	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCATCCTTGCTGTGAA	NA	False	NA	NA	False	AATAAA	-15	NA	75864241	75862424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_75862400_75864200
ES_00037989	chr3	-	7360	19	NNC	ENSMUSG00000061175.13	novel	7299	18	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_18	31.0115967954323	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGAGCGTTTGTAGTT	8210	False	NA	-1	True	AATAAA	-17	NA	79474985	79363280	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79438849_79439029_79474815
ES_00037991	chr3	-	3195	12	NNC	ENSMUSG00000028020.17	novel	3029	10	NA	NA	-17	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	16.5474524268294	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCATTTGCTCTTTACTG	NA	False	NA	-16	True	ATTAAA	-17	NA	80820938	80750910	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_80752565_80757734_80757783_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80816093_80816246_80819274_80819426_80820823
ES_00037995	chr3	-	3157	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	31.4046174948844	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAGACCTCTGAGTTCC	9460	False	NA	-2	True	NA	NA	NA	87837434	87829907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230_87835356_87837162
ES_00037997	chr3	-	939	7	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	0	42289	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	330.338042347869	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCGCTGGGCGATGGAG	NA	False	NA	NA	False	NA	NA	NA	87965802	87921537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_87921569_87963826_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ES_00037998	chr3	-	1314	8	ISM	ENSMUSG00000104445.2	ENSMUST00000171887.4	1937	10	6817	250	6817	-250	3prime_fragment	TRUE	canonical	2	4	junction_4	1.39970842444753	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCGCCTCTCCC	6115	False	NA	NA	False	GATAAA	-24	NA	88155199	88150430	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_88150756_88150899_88150974_88151831_88151954_88152439_88152574_88152742_88152881_88153121_88153289_88154738_88154887_88154993
ES_00037999	chr3	-	228	1	Intergenic	novelGene_2577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAAGTTGTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	88193256	88193028	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_88193000_88193300
ES_00038000	chr3	-	570	4	Fusion	ENSMUSG00000010538.15_ENSMUSG00000103766.6	novel	600	2	NA	NA	6	-2987	multi-exon	FALSE	canonical	3	18	junction_1	76.027772703284	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTC	NA	False	NA	NA	False	NA	NA	NA	88204197	88193053	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_88193377_88194404_88194525_88202697_88202758_88204130
ES_00038001	chr3	-	998	2	FSM	ENSMUSG00000010538.15	ENSMUST00000123536.2	600	2	0	-398	0	398	multi-exon	FALSE	canonical	3	152	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGGTAAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	88204203	88201832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88202758_88204130
ES_00038002	chr3	-	2053	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGGCTCGTTCATT	NA	False	NA	NA	False	AATAAA	-11	NA	88241575	88236352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
ES_00038003	chr3	-	673	5	NNC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	6.26498204307083	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTGGGCTGGAGTCT	7140	False	NA	NA	False	AATAAA	-12	NA	88280038	88275929	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279858
ES_00038004	chr3	-	204	3	FSM	ENSMUSG00000074483.3	ENSMUST00000128732.2	351	3	0	147	0	-147	multi-exon	FALSE	canonical	3	41	junction_2	9	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGGCCAGAGCCCTTA	5212	False	NA	NA	False	NA	NA	NA	88291771	88291280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88291339_88291481_88291515_88291658
ES_00038005	chr3	-	1636	1	FSM	ENSMUSG00000028066.16	ENSMUST00000198774.2	2346	1	712	-2	712	2	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAGAAACAAAAAAACAACT	NA	False	NA	NA	False	NA	NA	NA	88306305	88304669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88304700_88306300
ES_00038006	chr3	-	2176	7	FSM	ENSMUSG00000028064.18	ENSMUST00000149145.2	2357	7	186	-5	186	2	multi-exon	TRUE	canonical	2	6	junction_6	14.3614066163451	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGGCGTGCTGTGCTGTT	NA	False	NA	NA	False	ATTAAA	-25	NA	88357159	88343263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986
ES_00038007	chr3	-	377	4	FSM	ENSMUSG00000028064.18	ENSMUST00000135732.8	713	4	336	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTGGACCACCTTCC	NA	False	NA	NA	False	NA	NA	NA	88358757	88357130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_88357160_88357294_88357420_88357817_88357935_88358651
ES_00038008	chr3	-	3336	14	NIC	ENSMUSG00000028063.16	novel	3156	12	NA	NA	23	1	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	57.8120807996956	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTGGTGTCTCTTTGT	7876	False	NA	-2	True	AATACA	-20	NA	88417240	88388453	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_88389408_88389652_88389920_88390624_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054_88410694_88411475_88411551_88417187
ES_00038010	chr3	-	224	1	Intergenic	novelGene_2581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCACTTAAAAGCTAAATA	NA	False	NA	NA	False	NA	NA	NA	88592151	88591927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_88591900_88592200
ES_00038012	chr3	-	285	1	Intergenic	novelGene_2586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTCAAAGCCAGCCTGG	4001	False	NA	NA	False	NA	NA	NA	88947178	88946893	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_88946900_88947200
ES_00038013	chr3	-	1943	9	ISM	ENSMUSG00000041263.15	ENSMUST00000052539.13	3316	10	2084	-6	-1182	6	3prime_fragment	TRUE	canonical	2	4	junction_8	10.5999705188269	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTCCCTGTGGGTTTC	NA	False	NA	1	True	AATAAA	-19	NA	88998534	88991281	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88998444
ES_00038014	chr3	-	239	2	Intergenic	novelGene_2588	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	21	junction_1	0	39	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAATATTTTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	89063128	89034372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_89034560_89063076
ES_00038017	chr3	-	1182	5	ISM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	86	0	-5	0	intron_retention	FALSE	canonical	3	133	junction_3	8.86002257333467	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177791	89175552	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368
ES_00038018	chr3	-	3906	24	NNC	ENSMUSG00000028041.18	novel	3914	24	NA	NA	0	6	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	41.0315015687092	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCCTTGGTAAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	89257281	89245842	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89246174_89246318_89247261_89247361_89247481_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00038019	chr3	-	3912	24	FSM	ENSMUSG00000028041.18	ENSMUST00000184651.8	3914	24	8	-6	0	6	multi-exon	FALSE	canonical	1	2	junction_1	40.1114232606179	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCCTTGGTAAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	89257281	89245842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89246174_89246318_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ES_00038021	chr3	-	5067	11	NNC	ENSMUSG00000027947.12	novel	3343	10	NA	NA	0	1971	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	4.56508488420533	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGACACTAGGAAGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	89820469	89774659	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89775195_89775441_89778694_89784115_89784216_89785150_89785221_89786155_89786203_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
ES_00038023	chr3	-	4210	30	NNC	ENSMUSG00000042520.17	novel	3975	28	NA	NA	0	21494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.842869506322	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCCTGGCTTCATCACTC	3550	False	NA	NA	False	NA	NA	NA	89959779	89885952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_89885978_89907450_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ES_00038025	chr3	-	4032	28	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	275	junction_1	228.423841363276	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCAGCCTCTGCCCAT	3572	False	NA	NA	False	AAAAAG	-22	NA	89959757	89907595	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ES_00038027	chr3	-	384	1	FSM	ENSMUSG00000042520.17	ENSMUST00000199016.2	2396	1	1713	299	1713	-299	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACTTAGGTCTTACTAAG	NA	False	NA	NA	False	NA	NA	NA	89944450	89944066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_89944100_89944400
ES_00038028	chr3	-	495	5	NNC	ENSMUSG00000090733.7	novel	458	5	NA	NA	0	45205	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	9227.23601627269	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	90120608	90074623	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90074731_90084263_90084350_90119978_90120061_90120240_90120352_90120499
ES_00038029	chr3	-	497	5	NNC	ENSMUSG00000090733.7	novel	458	5	NA	NA	0	45205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9227.23601627269	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	90120608	90074623	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90074731_90084263_90084352_90119978_90120061_90120240_90120352_90120499
ES_00038032	chr3	-	3293	22	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	815	-1	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_16	35.9283741987076	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTCTCTTCTTGGGAG	NA	False	NA	-2	True	ATTAAA	-16	NA	90372358	90357898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90358490_90358612_90358705_90362124_90362224_90362355_90362574_90363007_90363077_90363202_90363327_90363469_90363617_90364215_90364385_90364627_90364784_90365378_90365536_90365628_90365701_90365938_90366044_90366351_90366430_90366629_90366705_90367239_90367361_90368396_90368482_90368671_90368808_90369472_90369565_90369874_90370011_90370441_90370556_90371117_90371318_90372101
ES_00038033	chr3	-	1984	6	NNC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	556.821120289093	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416769	90406262	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_90407415_90409422_90409556_90410398_90410590_90413414_90413569_90414851_90414934_90416497
ES_00038034	chr3	-	734	1	FSM	ENSMUSG00000105819.2	ENSMUST00000200512.2	734	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAGGAGCATATACAACAA	NA	False	NA	NA	False	NA	NA	NA	90616921	90616187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_90616200_90616900
ES_00038035	chr3	-	341	1	FSM	ENSMUSG00000103031.2	ENSMUST00000195273.2	237	1	153	-257	153	257	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTACAAGGATAATGTATA	9490	False	NA	NA	False	NA	NA	NA	93437899	93437558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_93437600_93437900
ES_00038036	chr3	-	261	1	FSM	ENSMUSG00000104631.2	ENSMUST00000196327.2	878	1	609	8	609	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCATCTCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94444186	94443925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94443900_94444200
ES_00038037	chr3	-	1258	1	FSM	ENSMUSG00000105412.2	ENSMUST00000198380.2	1258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAACCCCACCCTAA	NA	False	NA	NA	False	NA	NA	NA	94484341	94483083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94483100_94484300
ES_00038038	chr3	-	4930	3	FSM	ENSMUSG00000019338.14	ENSMUST00000146169.2	4930	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	5.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94919118	94913900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_94915525_94915690_94917534_94917655
ES_00038040	chr3	-	220	1	Intergenic	novelGene_2618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGAGATGAATCGAGGAC	NA	False	NA	NA	False	NA	NA	NA	94939675	94939455	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_94939500_94939700
ES_00038041	chr3	-	247	2	Antisense	novelGene_ENSMUSG00000098198.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	95120654	95034115	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr3_-_95034160_95120451
ES_00038043	chr3	-	872	2	FSM	ENSMUSG00000092607.10	ENSMUST00000174508.2	686	2	-178	-8	-178	8	multi-exon	FALSE	canonical	3	387	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTCCTTGTTCAGTCT	4387	False	NA	-15	True	AATAAA	-36	NA	95038173	95037021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95037195_95037474
ES_00038044	chr3	-	1116	2	FSM	ENSMUSG00000013707.4	ENSMUST00000013851.4	1122	2	6	0	6	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGGCTCACGGTTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	95049665	95046831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95047908_95049625
ES_00038045	chr3	-	555	2	FSM	ENSMUSG00000093424.4	ENSMUST00000176569.3	555	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGTACATTGTTG	9735	False	NA	NA	False	NA	NA	NA	95222438	95218688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95218919_95222113
ES_00038046	chr3	-	4019	18	FSM	ENSMUSG00000015850.12	ENSMUST00000117782.8	4036	18	17	0	17	0	multi-exon	TRUE	canonical	1	3	junction_17	6.21918006589627	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCTTCGTTATGTTCA	NA	False	NA	NA	False	ATTAAA	-18	NA	95595211	95583510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670_95592009_95592268_95592327_95592765_95592982_95595131
ES_00038047	chr3	-	550	2	FSM	ENSMUSG00000015748.14	ENSMUST00000163059.2	592	2	42	0	42	0	multi-exon	FALSE	canonical	3	427	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95740078	95737933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95738278_95739872
ES_00038050	chr3	-	664	4	NNC	ENSMUSG00000054312.7	novel	488	3	NA	NA	0	5645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	388.541718051829	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGGAAGGCTCACCTGT	NA	False	NA	NA	False	NA	NA	NA	95778831	95764300	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_95764492_95769960_95770245_95777805_95777928_95778764
ES_00038051	chr3	-	1054	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	11	3	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	70.7615714918769	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTTTTTTTTTTTTTT	NA	False	NA	2	True	ATTAAA	-18	NA	95789504	95785811	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789466
ES_00038052	chr3	-	417	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	-139	-12	-28	12	multi-exon	FALSE	canonical	3	103	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATCCTGTTTTGTCAG	NA	False	NA	NA	False	AATAAA	-28	NA	95965170	95964186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_95964427_95964993
ES_00038053	chr3	-	520	1	FSM	ENSMUSG00000068855.4	ENSMUST00000090782.4	520	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACTTTGGTGGCTCTTA	NA	False	NA	54	True	NA	NA	NA	96128196	96127676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96127700_96128200
ES_00038054	chr3	-	351	1	FSM	ENSMUSG00000091405.3	ENSMUST00000171473.3	1630	1	-9	1288	-9	-1288	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCATCCCTAACGGCCC	1787	False	NA	NA	False	NA	NA	NA	96170636	96170285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96170300_96170600
ES_00038055	chr3	-	865	1	FSM	ENSMUSG00000118406.2	ENSMUST00000238714.2	397	1	14	-482	14	482	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGTCTTCCCCTGCCTA	NA	False	NA	NA	False	TTTAAA	-3	NA	96322135	96321270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_96321300_96322100
ES_00038057	chr3	-	1435	9	NNC	ENSMUSG00000028104.15	novel	1427	8	NA	NA	0	3064	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	31.3408678884296	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAGAAAGAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	96501475	96482123	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_96482159_96485192_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
ES_00038058	chr3	-	1160	8	NIC	ENSMUSG00000028100.12	novel	1110	8	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	18.0611207191761	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96615850	96613383	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615203_96615307_96615492_96615643
ES_00038062	chr3	-	3335	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	-32	1	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGGTTCCCTGAATATT	NA	False	NA	-14	True	ATTAAA	-16	NA	100069680	100045494	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
ES_00038063	chr3	-	3120	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20566	2284	intron_retention	FALSE	canonical	3	15	junction_1	0	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTTTCTATCTGCAA	NA	False	NA	NA	False	AATAAA	-23	NA	103126857	103103257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_103106313_103126792
ES_00038064	chr3	-	3028	2	FSM	ENSMUSG00000027848.13	ENSMUST00000154145.2	3981	2	953	0	953	0	multi-exon	FALSE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACAGGTGTGTGCTTGT	1735	False	NA	NA	False	AATAAA	-29	NA	103644331	103641015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_103643980_103644267
ES_00038065	chr3	-	204	1	Intergenic	novelGene_2651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGCTCTTACTATGTAG	NA	False	NA	NA	False	NA	NA	NA	104673088	104672884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_-_104672900_104673100
ES_00038066	chr3	-	1081	6	NIC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	1822.08072269041	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGTTTCATACTCTG	NA	False	NA	-20	True	AATAAA	-16	NA	105866562	105850013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866463
ES_00038068	chr3	-	1058	9	NNC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	81100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	225.24209198105	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAACAACAAAAAAAAAACCA	2074	False	NA	NA	False	NA	NA	NA	107893737	107807917	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_107807944_107889017_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
ES_00038069	chr3	-	1230	9	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	106	51555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.243552770391	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCATTTTAAATGGCTCT	NA	False	NA	NA	False	NA	NA	NA	107876493	107819456	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_107819489_107871018_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ES_00038070	chr3	-	1471	8	FSM	ENSMUSG00000027890.18	ENSMUST00000178808.8	1462	8	-7	-2	0	0	multi-exon	FALSE	canonical	3	22	junction_7	32.937169624258	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952182	107947723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952160
ES_00038072	chr3	-	629	4	FSM	ENSMUSG00000000339.15	ENSMUST00000124486.2	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_1	22.6421435969889	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGTGTTCACGTACGCTC	NA	False	NA	NA	False	NA	NA	NA	116289614	116282888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284
ES_00038073	chr3	-	487	1	FSM	ENSMUSG00000082394.2	ENSMUST00000117197.2	442	1	17	-62	17	62	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTGATTTTCTTATCC	NA	False	NA	NA	False	AATAAA	-17	NA	116322210	116321723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116321700_116322200
ES_00038075	chr3	-	657	3	FSM	ENSMUSG00000089911.5	ENSMUST00000138418.2	657	3	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_2	76	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCAACAGATGATTTC	NA	False	NA	NA	False	NA	NA	NA	116456140	116441766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_116442231_116445052_116445149_116456043
ES_00038080	chr3	-	2405	10	NIC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	76.5041756304118	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179632	123161945	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_123163340_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ES_00038086	chr3	-	2620	9	NIC	ENSMUSG00000074238.7	novel	2662	10	NA	NA	19	-2	combination_of_known_splicesites	FALSE	canonical	3	48	junction_6	132.051067299738	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCATCATGGCTTCAT	NA	False	NA	-13	True	AATAAA	-19	NA	127631141	127600657	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127616232_127616260_127616913_127616963_127630797
ES_00038089	chr3	-	585	1	FSM	ENSMUSG00000062006.13	ENSMUST00000199001.2	573	1	0	-12	0	9	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGATTTGTTTAGGACT	NA	False	NA	-2	True	AATAAA	-29	NA	130521055	130520470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr3_-_130520500_130521100
ES_00038093	chr3	-	4262	13	Fusion	ENSMUSG00000040998.19_ENSMUSG00000028018.16	novel	3503	12	NA	NA	136	24	multi-exon	FALSE	non_canonical	0	0	junction_1	54.4264922216705	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCTGATTTTTGGGACT	NA	False	NA	NA	False	AATAAA	-45	NA	132797372	132587481	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr3_-_132588460_132687517_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
ES_00038097	chr3	-	8960	12	NNC	ENSMUSG00000040943.13	novel	9021	12	NA	NA	-25995	3470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.1607978309962	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGGGGAGGGGCAACCAA	NA	False	NA	NA	False	NA	NA	NA	133212438	133165969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_133166004_133169442_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182394_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133212373
ES_00038107	chr3	-	3308	7	NIC	ENSMUSG00000004591.17	novel	2510	16	NA	NA	15	1620	intron_retention	FALSE	canonical	3	467	junction_2	29.0975371237269	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAGATCAATGTTATCT	NA	False	NA	NA	False	AATAAA	-22	NA	142587729	142525449	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ES_00038113	chr3	-	4450	11	NNC	ENSMUSG00000005034.16	novel	4347	10	NA	NA	-46	15865	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.7130372692978	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGACAACAACAACAACAA	2622	False	NA	NA	False	NA	NA	NA	146518791	146419463	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr3_-_146419496_146435333_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
ES_00038123	chr3	-	1317	10	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	240.631627694519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6081	False	NA	-29	True	AATAAA	-16	NA	153618665	153613090	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ES_00038126	chr3	+	236	1	Intergenic	novelGene_2474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCCATTTTACCAATGC	NA	False	NA	NA	False	NA	NA	NA	4453143	4453379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_4453100_4453400
ES_00038128	chr3	+	249	1	Intergenic	novelGene_2490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGTATCTTTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	10449258	10449507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_10449300_10449500
ES_00038130	chr3	+	211	1	Intergenic	novelGene_2524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTATGTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	33159840	33160051	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_33159800_33160100
ES_00038131	chr3	+	246	1	Intergenic	novelGene_2532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTCAAGATGTCTTTG	NA	False	NA	NA	False	ATTAAA	-34	NA	41578530	41578776	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_41578500_41578800
ES_00038132	chr3	+	217	1	Intergenic	novelGene_2534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATATATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	48997181	48997398	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_48997200_48997400
ES_00038133	chr3	+	268	1	Intergenic	novelGene_2538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGTGTTATAATTGCAT	NA	False	NA	NA	False	AATAGA	-1	NA	51251813	51252081	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_51251800_51252100
ES_00038135	chr3	+	222	1	Intergenic	novelGene_2544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	408	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCATGGATTTATAATGGA	NA	False	NA	NA	False	NA	NA	NA	53435255	53435477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_53435300_53435500
ES_00038136	chr3	+	1141	1	Intergenic	novelGene_2558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTTTTTATTAAAGGTT	NA	False	NA	2	True	NA	NA	NA	69871486	69872627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_69871500_69872600
ES_00038137	chr3	+	3930	1	Intergenic	novelGene_2560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	NA	False	NA	NA	False	NA	NA	NA	70479230	70483160	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_70479200_70483200
ES_00038138	chr3	+	207	1	Intergenic	novelGene_2562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGATTTCTAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	73305614	73305821	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_73305600_73305800
ES_00038140	chr3	+	203	1	Intergenic	novelGene_2571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCTGTTTTTATTCCAC	1141	False	NA	NA	False	NA	NA	NA	86085559	86085762	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_86085600_86085800
ES_00038141	chr3	+	235	1	Intergenic	novelGene_2573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGAAAGTCCTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	87786739	87786974	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_87786700_87787000
ES_00038143	chr3	+	219	1	Intergenic	novelGene_2576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCACTCTGAAGGCAG	931	False	NA	NA	False	NA	NA	NA	88044071	88044290	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88044100_88044300
ES_00038145	chr3	+	356	1	Intergenic	novelGene_2584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTAAAAGTTAGTGAAAC	2841	False	NA	NA	False	NA	NA	NA	88704957	88705313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_88705000_88705300
ES_00038146	chr3	+	202	1	Intergenic	novelGene_2590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCAGGTGGGGGCTGGTG	6054	False	NA	NA	False	NA	NA	NA	89373673	89373875	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89373700_89373900
ES_00038147	chr3	+	220	1	Intergenic	novelGene_2592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACACACACACACACACA	9376	False	NA	NA	False	NA	NA	NA	89405091	89405311	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89405100_89405300
ES_00038148	chr3	+	209	1	Intergenic	novelGene_2594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCAAGGGCAGAAAACAT	9564	False	NA	NA	False	NA	NA	NA	89791858	89792067	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_89791900_89792100
ES_00038149	chr3	+	487	1	Intergenic	novelGene_2600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTTATTAAAGCATTAA	NA	False	NA	NA	False	NA	NA	NA	91186374	91186861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_91186400_91186900
ES_00038150	chr3	+	701	1	Intergenic	novelGene_2601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCATAAATTATGCACA	NA	False	NA	NA	False	NA	NA	NA	91187457	91188158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_91187500_91188200
ES_00038151	chr3	+	1448	1	Intergenic	novelGene_2604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAATAAGAGGTTGTAG	NA	False	NA	NA	False	NA	NA	NA	93604145	93605593	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93604100_93605600
ES_00038152	chr3	+	1177	1	Intergenic	novelGene_2606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGGGGTCCAGGAGGCT	NA	False	NA	NA	False	NA	NA	NA	93606678	93607855	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_93606700_93607900
ES_00038154	chr3	+	205	1	Intergenic	novelGene_2619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTTTACAAAGAACCCTA	8275	False	NA	NA	False	NA	NA	NA	95014870	95015075	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95014900_95015100
ES_00038155	chr3	+	817	1	Intergenic	novelGene_2623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTTAAAAATTATGGT	NA	False	NA	NA	False	NA	NA	NA	95304005	95304822	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95304000_95304800
ES_00038156	chr3	+	1740	1	Intergenic	novelGene_2624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTAAAGAGCAATTGTTC	NA	False	NA	NA	False	NA	NA	NA	95305132	95306872	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95305100_95306900
ES_00038157	chr3	+	201	1	Intergenic	novelGene_2625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCTCTTCTGACTTCTG	NA	False	NA	NA	False	NA	NA	NA	95715049	95715250	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95715000_95715200
ES_00038158	chr3	+	227	1	Intergenic	novelGene_2627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTGATGGTGTAGG	1981	False	NA	NA	False	AAAAAG	-29	NA	95821301	95821528	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_95821300_95821500
ES_00038159	chr3	+	200	1	Intergenic	novelGene_2628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATCAAAGGCTAGGCAA	NA	False	NA	NA	False	AAGAAA	-3	NA	96042966	96043166	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96043000_96043200
ES_00038160	chr3	+	201	1	Intergenic	novelGene_2629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCAGGGTGTGTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	96217219	96217420	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96217200_96217400
ES_00038161	chr3	+	322	1	Intergenic	novelGene_2631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATAAATGTGAAACCGATT	9065	False	NA	NA	False	NA	NA	NA	96230226	96230548	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96230200_96230500
ES_00038162	chr3	+	214	1	Intergenic	novelGene_2632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTCAGAATGGAATCTA	1781	False	NA	NA	False	NA	NA	NA	96249633	96249847	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96249600_96249800
ES_00038163	chr3	+	363	1	Intergenic	novelGene_2633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGCCTCCACCTCCA	NA	False	NA	NA	False	NA	NA	NA	96312610	96312973	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96312600_96313000
ES_00038164	chr3	+	202	1	Intergenic	novelGene_2636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTTACAATTCTATACC	NA	False	NA	NA	False	NA	NA	NA	96442413	96442615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_96442400_96442600
ES_00038165	chr3	+	624	1	Intergenic	novelGene_2642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	374	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTATGCGATCTGGTAAAA	NA	False	NA	NA	False	NA	NA	NA	100218661	100219285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_100218700_100219300
ES_00038167	chr3	+	242	1	Intergenic	novelGene_2645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTTCCTCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	102908696	102908938	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_102908700_102908900
ES_00038168	chr3	+	204	1	Intergenic	novelGene_2647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATATATGAGTACAC	NA	False	NA	NA	False	NA	NA	NA	103204786	103204990	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_103204800_103205000
ES_00038169	chr3	+	209	1	Intergenic	novelGene_2653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCCAGCTCTTTACAAG	NA	False	NA	NA	False	NA	NA	NA	105430211	105430420	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_105430200_105430400
ES_00038170	chr3	+	206	1	Intergenic	novelGene_2656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTTCAAAAACCTTGAC	NA	False	NA	NA	False	NA	NA	NA	108789574	108789780	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr3_+_108789600_108789800
ES_00038180	chr4	+	4346	13	FSM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-19	0	-19	0	multi-exon	FALSE	canonical	2	97	junction_11	33.5186515241887	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATTTTGTTTTATTTTT	-8	True	NA	11	True	NA	NA	NA	3574855	3616619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
ES_00038182	chr4	+	3480	13	FSM	ENSMUSG00000042228.15	ENSMUST00000041377.13	3463	13	-17	0	-17	0	multi-exon	FALSE	canonical	3	29	junction_2	7.08823359911026	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATCTTGTCTTACTTC	8	True	NA	NA	False	ACTAAA	-18	NA	3678097	3791613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3678365_3738724_3738862_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
ES_00038183	chr4	+	3387	13	FSM	ENSMUSG00000042228.15	ENSMUST00000103010.4	3387	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	11.3023473471468	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATCTTGTCTTACTT	5	True	NA	NA	False	ACTAAA	-17	NA	3678126	3791612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3678365_3738724_3738799_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
ES_00038184	chr4	+	733	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	-130	17	-104	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	NA	False	NA	6	True	NA	NA	NA	3938783	3943504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ES_00038185	chr4	+	817	6	FSM	ENSMUSG00000042198.13	ENSMUST00000120732.8	711	6	-130	24	-104	0	multi-exon	FALSE	canonical	3	13	junction_4	192.067279878693	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	NA	False	NA	6	True	NA	NA	NA	3938783	3943504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3942987_3943027_3943387
ES_00038186	chr4	+	572	5	FSM	ENSMUSG00000042198.13	ENSMUST00000149544.8	426	5	-114	-32	-112	0	multi-exon	FALSE	canonical	3	70	junction_1	158.419537936455	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	NA	False	NA	6	True	NA	NA	NA	3938775	3943504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ES_00038187	chr4	+	612	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	-107	19	-107	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	NA	False	NA	6	True	NA	NA	NA	3938780	3943504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ES_00038188	chr4	+	895	4	FSM	ENSMUSG00000042198.13	ENSMUST00000119307.8	889	4	-6	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	14.7271480229163	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	-5	True	NA	6	True	NA	NA	NA	3938913	3943504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3939527_3941245_3941312_3942720_3942820_3943387
ES_00038189	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ES_00038191	chr4	+	4076	4	FSM	ENSMUSG00000049119.15	ENSMUST00000124256.8	618	4	-25	-3433	-25	714	multi-exon	FALSE	canonical	3	14	junction_1	25.9272486435067	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAATCTTTGACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	5644064	5801815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_5644411_5678902_5678999_5729570_5729658_5798268
ES_00038192	chr4	+	3248	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	-38	0	-7	0	multi-exon	FALSE	canonical	3	35	junction_1	17	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGCTGATTTCTTTGTC	NA	False	NA	12	True	AATAAA	-21	NA	5644082	5801101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_5644411_5729570_5729658_5798268
ES_00038193	chr4	+	6663	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	-21	0	-21	0	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCGTGCCTCAGTGTGAC	NA	False	NA	22	True	AATAAA	-24	NA	6191076	6221688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ES_00038194	chr4	+	2021	6	ISM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	10536	5059	10536	-5059	3prime_fragment	FALSE	canonical	3	124	junction_5	11.7915223783869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGCTCTTGGTAAGAT	NA	False	NA	NA	False	TATAAA	-41	NA	6201633	6216629	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ES_00038196	chr4	+	2104	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	-18	0	9	0	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGTCTGTCTGTGCCTG	7858	False	NA	13	True	ATTAAA	-18	NA	6365658	6395655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ES_00038197	chr4	+	2791	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	-43	-3	-43	3	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACAGACTTAATGTTATT	7806	False	NA	NA	False	TATAAA	-16	NA	6365606	6396287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ES_00038198	chr4	+	1423	1	Genic_Genomic	ENSMUSG00000083068.2	novel	NA	NA	NA	NA	-1261	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTTTTCTCATCACCGG	NA	False	NA	NA	False	NA	NA	NA	8117358	8118781	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_8117400_8118800
ES_00038199	chr4	+	2133	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTAATGGCTGCCTTT	-17	True	NA	86	True	NA	NA	NA	8535643	8607778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ES_00038201	chr4	+	2403	3	FSM	ENSMUSG00000041235.13	ENSMUST00000127476.8	2381	3	-22	0	-22	0	multi-exon	FALSE	canonical	3	49	junction_1	6	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAGAAAAAGAAA	21	True	NA	NA	False	NA	NA	NA	8690447	8785591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_8690776_8751323_8753149_8785341
ES_00038202	chr4	+	10496	38	NIC	ENSMUSG00000041235.13	novel	3462	5	NA	NA	-22	25	combination_of_known_junctions	TRUE	canonical	3	42	junction_5	13.3684101547544	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGTGTCCACTTTTTTT	21	True	NA	41	True	NA	NA	NA	8690447	8867684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_8690776_8751323_8753149_8785341_8785764_8801323_8801466_8805150_8805289_8806295_8806362_8811439_8811496_8822376_8822492_8825461_8825546_8826208_8826347_8826442_8826565_8826883_8827128_8828231_8828409_8832474_8832619_8833739_8833996_8838550_8838762_8839424_8839621_8840388_8840557_8841095_8841276_8844311_8844423_8844506_8844713_8847078_8847279_8847456_8847617_8850795_8850886_8851253_8851358_8852677_8852808_8853173_8853247_8853402_8853461_8854064_8854294_8854524_8854734_8854845_8855515_8856673_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ES_00038204	chr4	+	636	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	20	False	NA	NA	False	AAAAAG	-44	NA	10848419	10849055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_10848400_10849100
ES_00038205	chr4	+	1596	1	FSM	ENSMUSG00000083220.2	ENSMUST00000119855.2	1594	1	-132	130	-132	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATTGAACTTAATGGAGA	5311	False	NA	NA	False	GATAAA	-45	NA	10853710	10855306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_10853700_10855300
ES_00038206	chr4	+	235	1	Intergenic	novelGene_2694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGAGTTGCCTTGGTC	7074	False	NA	NA	False	AATAAA	-41	NA	10855473	10855708	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_10855500_10855700
ES_00038207	chr4	+	2116	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	NA	False	NA	11	True	AATAAA	-15	NA	10874497	10899421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
ES_00038209	chr4	+	552	1	FSM	ENSMUSG00000081715.2	ENSMUST00000117608.2	486	1	-25	-41	-25	41	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTCCATTCTGTAGAT	NA	False	NA	NA	False	AATAAA	-32	NA	10946582	10947134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_10946600_10947100
ES_00038210	chr4	+	218	2	Intergenic	novelGene_2698	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	37	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	11081300	11114671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11081354_11114506
ES_00038211	chr4	+	217	2	Intergenic	novelGene_2699	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTATGTAGTCGAGGGA	9056	False	NA	NA	False	NA	NA	NA	11114452	11122050	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11114507_11121887
ES_00038213	chr4	+	5448	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	-16	0	-6	0	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	-8	True	NA	16	True	AATAAA	-17	NA	11156424	11174379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
ES_00038215	chr4	+	2906	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	2	0	2	0	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAAAAATGGCATCAC	311	False	NA	NA	False	NA	NA	NA	11191731	11204682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ES_00038216	chr4	+	3000	12	FSM	ENSMUSG00000028212.17	ENSMUST00000029866.16	3006	12	6	0	2	0	multi-exon	FALSE	canonical	3	47	junction_2	64.9822607707368	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAAGATGGTTGTCTTT	311	False	NA	NA	False	AATAAA	-23	NA	11191731	11204779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11191816_11192680_11192718_11192817_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ES_00038219	chr4	+	6517	24	FSM	ENSMUSG00000040720.16	ENSMUST00000059914.13	6506	24	-11	0	-11	0	multi-exon	TRUE	canonical	3	55	junction_9	10.2468585254619	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAAGTGTATGAGTCT	NA	False	NA	NA	False	TATAAA	-29	NA	11485946	11550684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
ES_00038220	chr4	+	4332	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	-68	-1861	-48	1861	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCCATTCGTCAGAGTA	NA	False	NA	NA	False	AATAAA	-27	NA	11558873	11587605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
ES_00038221	chr4	+	2870	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	25	True	NA	19	True	AGTAAA	-16	NA	11558971	11615805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
ES_00038226	chr4	+	1097	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-40	-2001	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	20.6774165590278	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAGACATTTTCGGAAAC	14	False	NA	NA	False	NA	NA	NA	12089398	12093921	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_12089506_12089662_12089796_12092522_12092573_12093114
ES_00038227	chr4	+	1953	1	FSM	ENSMUSG00000083246.2	ENSMUST00000120647.2	1953	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTACCTCTTAGACAAGAA	822	False	NA	NA	False	AAGAAA	-32	NA	12114283	12116236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12114300_12116200
ES_00038229	chr4	+	2932	4	FSM	ENSMUSG00000046667.15	ENSMUST00000050069.9	2949	4	17	0	-1	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4089350286454	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATTAAAAATAAAAAATAT	16	False	NA	NA	False	TATAAA	-20	NA	12140283	12146700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12140402_12140540_12140606_12143409_12143460_12144001
ES_00038230	chr4	+	3069	3	FSM	ENSMUSG00000046667.15	ENSMUST00000069128.8	3069	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	12.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	16	False	NA	NA	False	AATAAA	-18	NA	12140316	12146731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12140606_12143409_12143460_12144001
ES_00038231	chr4	+	1907	1	FSM	ENSMUSG00000060989.9	ENSMUST00000125165.2	1119	1	-49	-739	-49	739	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	-1	True	NA	NA	False	AAAAAG	-13	NA	12232783	12234690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12232800_12234700
ES_00038232	chr4	+	512	1	FSM	ENSMUSG00000082128.2	ENSMUST00000120191.2	846	1	200	134	200	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	842	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTAGGTTCCCTCTGTG	286	False	NA	NA	False	NA	NA	NA	14170265	14170777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_14170300_14170800
ES_00038233	chr4	+	471	1	FSM	ENSMUSG00000081239.4	ENSMUST00000121022.2	441	1	-44	14	-44	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGTGCTGAATAGCTGA	1	True	NA	NA	False	NA	NA	NA	14433846	14434317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_14433800_14434300
ES_00038234	chr4	+	2339	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAGAGAAAATGATAAAT	21	False	NA	-79	True	NA	NA	NA	14864075	14915176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ES_00038235	chr4	+	876	6	FSM	ENSMUSG00000086587.8	ENSMUST00000136992.8	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	12.687001221723	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGGTACAGAATTTTT	0	True	NA	6	True	TATAAA	-17	NA	14930660	14953030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
ES_00038236	chr4	+	4760	3	FSM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	-90	0	-90	0	multi-exon	FALSE	canonical	3	428	junction_2	4.5	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTCTTCTCTTTCTTT	NA	False	NA	18	True	AATAAA	-19	NA	15265740	15286753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_15266750_15281006_15281163_15283158
ES_00038237	chr4	+	2533	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	0	0	0	0	multi-exon	TRUE	canonical	3	165	junction_3	27.9629914152418	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-45	True	NA	9	True	AATAAA	-15	NA	15957924	15992589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
ES_00038238	chr4	+	985	1	FSM	ENSMUSG00000082320.2	ENSMUST00000118921.2	852	1	29	-162	29	162	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATCTTGAGCAGAATA	104	False	NA	NA	False	NA	NA	NA	19298361	19299346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_19298400_19299300
ES_00038239	chr4	+	1915	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	-126	-55	-81	55	multi-exon	FALSE	canonical	3	39	junction_9	10.5736686696625	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCACATATAATGTATCT	9	True	NA	NA	False	NA	NA	NA	19575080	19606987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
ES_00038240	chr4	+	2777	5	FSM	ENSMUSG00000073988.14	ENSMUST00000121491.8	2862	5	85	0	85	0	multi-exon	FALSE	canonical	3	35	junction_1	15.2212844398888	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTGTTTATATTTTTC	102	False	NA	21	True	AATAAA	-17	NA	20008091	20030470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_20008347_20014630_20014785_20021191_20021386_20023784_20023896_20028407
ES_00038241	chr4	+	3159	5	FSM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	-77	-29	-6	29	multi-exon	FALSE	canonical	3	28	junction_1	18.1934053986603	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCTGACTAAGTAGCAC	361	False	NA	NA	False	ATTAAA	-20	NA	20008350	20030814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_20008644_20014630_20014785_20021191_20021386_20023784_20023896_20028407
ES_00038242	chr4	+	1972	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	-7	0	-7	0	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACTGTTTTTGAAGATAA	21	False	NA	NA	False	AATAAA	-20	NA	20042044	20066750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ES_00038243	chr4	+	3500	13	FSM	ENSMUSG00000028252.21	ENSMUST00000065928.11	3484	13	-16	0	-16	0	multi-exon	FALSE	canonical	3	29	junction_12	125.983023547707	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	21727684	21750546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
ES_00038244	chr4	+	3406	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	-41	0	-16	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	21727684	21750546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
ES_00038245	chr4	+	1408	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	-2	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-7	True	NA	12	True	AATAAA	-14	NA	21727752	21747962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ES_00038247	chr4	+	6013	18	FSM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	-10	0	1	0	multi-exon	FALSE	canonical	0	0	junction_13	7.72986837222362	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTAGTTCCCTGGCTTG	-18	True	NA	3	True	AATAAA	-16	NA	21776261	21837870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
ES_00038248	chr4	+	5870	17	FSM	ENSMUSG00000040455.18	ENSMUST00000040429.12	5861	17	-9	0	2	0	multi-exon	FALSE	canonical	3	5	junction_12	7.05226027596827	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTCCCTGGCTTGCT	-17	True	NA	5	True	AATAAA	-18	NA	21776262	21837872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
ES_00038249	chr4	+	4545	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCTATGATACATACA	5	False	NA	18	True	AATAAA	-18	NA	21847582	21876475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
ES_00038254	chr4	+	3091	11	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	475	1219	0	0	intron_retention	FALSE	canonical	3	310	junction_8	50.2622124463299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCACCTTAATTTTAT	-1	True	NA	13	True	AATAAA	-25	NA	21848057	21875256	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
ES_00038258	chr4	+	2673	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	-22	0	-22	0	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGCCATTGTGC	5115	False	NA	11	True	NA	NA	NA	21879650	21912162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ES_00038259	chr4	+	4465	5	FSM	ENSMUSG00000028246.14	ENSMUST00000123481.2	4465	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	3.56195171219375	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCACTCTGTCTTTTAT	28	True	NA	NA	False	NA	NA	NA	21931356	21996839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21982385_21982503_21993297
ES_00038260	chr4	+	2546	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	NA	False	NA	NA	False	AATAAA	-44	NA	22357542	22434091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ES_00038261	chr4	+	2494	9	FSM	ENSMUSG00000040410.15	ENSMUST00000184455.8	2478	9	-16	0	-5	0	multi-exon	FALSE	canonical	2	4	junction_4	22.7156333832011	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTTTGTTAAGAATC	-27	True	NA	NA	False	AATAAA	-41	NA	22357554	22434088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ES_00038262	chr4	+	489	1	FSM	ENSMUSG00000081810.2	ENSMUST00000117908.2	400	1	-23	-66	-23	66	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCTCCAAAAAAAAAAAATA	10	False	NA	NA	False	AATAAA	-10	NA	22519604	22520093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_22519600_22520100
ES_00038263	chr4	+	4497	24	FSM	ENSMUSG00000045751.17	ENSMUST00000108222.9	4478	24	-20	1	-20	0	multi-exon	FALSE	canonical	3	129	junction_15	74.8650203134992	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTCTCTGTGAATATTT	NA	False	NA	NA	False	ATTAAA	-22	NA	24496430	24602949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
ES_00038264	chr4	+	1369	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	-19	0	-8	0	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-24	True	NA	9	True	AATAAA	-18	NA	24496442	24503413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ES_00038265	chr4	+	3563	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	5	64	5	-64	multi-exon	FALSE	canonical	3	446	junction_2	23.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCCTGATGTCATCCAGG	-32	True	NA	NA	False	TATAAA	-32	NA	24898087	24904937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24898303_24898572_24898677_24901693
ES_00038267	chr4	+	5773	17	FSM	ENSMUSG00000028284.14	ENSMUST00000037607.11	5773	17	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_6	19.7680890262564	1629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACAGTTTACTGAGTTT	-24	True	NA	22	True	NA	NA	NA	31964096	32023467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_31964383_31974822_31974934_31977323_31977390_31978430_31978477_31979735_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_31994873_31994955_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
ES_00038268	chr4	+	5859	16	FSM	ENSMUSG00000028284.14	ENSMUST00000080933.13	5669	16	-185	-5	-162	5	multi-exon	TRUE	canonical	3	14	junction_11	45.1522855333912	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTACTGAGTTTTGACA	-17	True	NA	27	True	NA	NA	NA	31963934	32023472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_31964383_31974822_31974934_31977323_31977390_31978430_31978477_31979735_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
ES_00038269	chr4	+	8810	7	FSM	ENSMUSG00000040270.17	ENSMUST00000108180.9	8882	7	5	67	5	-67	multi-exon	FALSE	canonical	0	0	junction_4	3.23608130649127	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTAGTGTTTACTGAATT	51	False	NA	NA	False	AATACA	-38	NA	32238808	32586037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32239090_32317197_32317305_32417434_32417584_32501612_32501868_32561777_32563368_32575239_32575447_32579816
ES_00038271	chr4	+	6807	11	FSM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	-8	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	76.4659401302305	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTAGTATGCTTCTT	21	False	NA	7	True	AATAAA	-20	NA	32615469	32653265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32615740_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ES_00038275	chr4	+	1875	11	FSM	ENSMUSG00000058006.13	ENSMUST00000150934.8	1875	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	3.9	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGAATTATCCATTTGG	NA	False	NA	NA	False	ATTAAA	-19	NA	32722935	32731480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32723102_32723480_32723702_32725018_32725133_32725832_32725966_32726825_32726942_32728041_32728176_32729629_32729788_32729950_32730072_32730279_32730491_32730755_32730985_32731208
ES_00038276	chr4	+	1923	3	FSM	ENSMUSG00000058006.13	ENSMUST00000138577.2	2265	3	342	0	342	0	multi-exon	FALSE	canonical	3	61	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	219	False	NA	NA	False	NA	NA	NA	32750912	32753615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32751069_32751211_32751394_32752030
ES_00038279	chr4	+	528	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	-113	-70	-113	70	mono-exon	FALSE	NA	NA	NA	NA	NA	433	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTCTCAGCTACTGCT	-18	True	NA	64	True	AATAAA	-44	NA	32964774	32965302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32964800_32965300
ES_00038280	chr4	+	5058	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	-50	0	-50	0	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	-7	True	NA	4	True	AATAAA	-19	NA	32982986	33022180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
ES_00038283	chr4	+	2678	3	FSM	ENSMUSG00000054679.9	ENSMUST00000067864.8	2939	3	260	1	-12	-1	multi-exon	FALSE	canonical	1	1	junction_1	3.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGTTTGATGTGCTGTC	5	True	NA	NA	False	AATAAA	-12	NA	33209250	33233339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_33209371_33226027_33226170_33230923
ES_00038284	chr4	+	2393	16	FSM	ENSMUSG00000028274.18	ENSMUST00000029942.8	2379	16	-14	0	3	0	multi-exon	TRUE	canonical	1	3	junction_15	78.2297471128044	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTCTTCTGGTTTTG	-33	True	NA	13	True	ATTAAA	-26	NA	33310313	33500914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500298
ES_00038285	chr4	+	4154	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	3	0	3	0	multi-exon	FALSE	canonical	3	214	junction_12	34.6965256025569	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTTTCCTGTCTCG	-33	True	NA	11	True	AATAAA	-18	NA	33310313	33502614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
ES_00038286	chr4	+	914	1	FSM	ENSMUSG00000062554.8	ENSMUST00000122336.2	381	1	-68	-465	-68	465	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAATTGTGGGGAGCGGGT	NA	False	NA	NA	False	NA	NA	NA	34353974	34354888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_34354000_34354900
ES_00038290	chr4	+	1866	20	FSM	ENSMUSG00000028292.15	ENSMUST00000142045.8	1843	20	-23	0	-6	0	multi-exon	TRUE	canonical	3	67	junction_4	142.027152021567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	-18	True	NA	8	True	AATAGA	-23	NA	34614950	34660163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630476_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ES_00038297	chr4	+	638	3	FSM	ENSMUSG00000028405.10	ENSMUST00000135787.2	638	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_2	48.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCGCATGACGGTGCAG	5560	False	NA	NA	False	NA	NA	NA	40190529	40196404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_40190885_40193738_40193862_40196244
ES_00038301	chr4	+	3376	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	0	0	0	0	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGCTGTTCAGCATTTT	-7	True	NA	NA	False	ATTAAA	-13	NA	40722479	40734964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ES_00038303	chr4	+	4124	8	FSM	ENSMUSG00000028410.14	ENSMUST00000129204.8	4119	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	76	junction_1	980.756538471757	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	-40	True	NA	5	True	AATATA	-17	NA	40722916	40733900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ES_00038304	chr4	+	5627	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	-5	0	-5	0	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAATCAATCCGAAGCT	-40	True	NA	NA	False	ATTAAA	-9	NA	40722916	40737149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ES_00038307	chr4	+	378	1	Intergenic	novelGene_2749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATAGCTGGGCGGTGGT	8195	False	NA	NA	False	NA	NA	NA	40861569	40861947	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40861600_40861900
ES_00038309	chr4	+	3611	16	FSM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	6	0	6	0	multi-exon	FALSE	canonical	3	26	junction_15	162.820473733086	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	6051	False	NA	16	True	NA	NA	NA	40970911	41012608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011526
ES_00038311	chr4	+	4588	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	6	0	6	0	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	6051	False	NA	34	True	ATTAAA	-19	NA	40970911	41025993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
ES_00038316	chr4	+	2497	6	FSM	ENSMUSG00000028437.15	ENSMUST00000108060.10	2514	6	17	0	17	0	multi-exon	FALSE	canonical	2	3	junction_4	125.151108664686	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTGCCTTAACCTC	10	False	NA	5	True	AATAAA	-14	NA	41349012	41389766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41388095_41388198_41388680
ES_00038317	chr4	+	3439	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	17	0	17	0	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGTTCTTAAATGTATG	10	False	NA	NA	False	AATATA	-14	NA	41349012	41390525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
ES_00038318	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4	True	NA	32	True	AATAAA	-28	NA	41465150	41480926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41465181_41477513_41477648_41480245
ES_00038319	chr4	+	929	3	NNC	ENSMUSG00000028443.7	novel	845	3	NA	NA	4616	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	93	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4620	False	NA	32	True	AATAAA	-28	NA	41469766	41480926	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_41469881_41477513_41477648_41480245
ES_00038321	chr4	+	1534	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	61	0	36	0	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	50	False	NA	32	True	AATAAA	-33	NA	41755288	41758695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ES_00038322	chr4	+	1798	10	FSM	ENSMUSG00000036073.19	ENSMUST00000108038.3	1859	10	61	0	36	0	multi-exon	FALSE	canonical	2	236	junction_6	33.0177655135258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	50	False	NA	32	True	AATAAA	-33	NA	41755288	41758695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083
ES_00038324	chr4	+	1072	2	Genic_Genomic	ENSMUSG00000091542.2	novel	5054	2	NA	NA	-325128	-3178	multi-exon	TRUE	canonical	3	807	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTACTGTGTAGCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	41881869	42232135	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_41881991_42231184
ES_00038330	chr4	+	5093	10	FSM	ENSMUSG00000035969.16	ENSMUST00000131668.3	5093	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	4.94413232473044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	8143	False	NA	17	True	AATAAA	-19	NA	43414695	43427088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227
ES_00038333	chr4	+	877	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	-12	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-11	True	NA	14	True	AGTAAA	-45	NA	43493376	43495921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
ES_00038335	chr4	+	1884	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	10.0615294563004	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCTTTTTACTGGCACA	6408	False	NA	5	True	AATAAA	-14	NA	43562331	43567060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ES_00038341	chr4	+	228	1	NIC	ENSMUSG00000028475.10	novel	1199	6	NA	NA	19624	-7352	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCATAGTTTTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	43751882	43752110	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_43751900_43752100
ES_00038342	chr4	+	4447	21	FSM	ENSMUSG00000028476.14	ENSMUST00000030198.7	4433	21	-14	0	-14	0	multi-exon	TRUE	canonical	3	46	junction_14	9.31812749429841	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTGTCTTTACTGT	NA	False	NA	NA	False	AATGAA	-19	NA	43875515	43944806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43875706_43890963_43891023_43894818_43894894_43895849_43895887_43897994_43898081_43900069_43900118_43909579_43909614_43911931_43912130_43913784_43914053_43918313_43918494_43922811_43923025_43925060_43925198_43927145_43927287_43928276_43928466_43930192_43930316_43930888_43931061_43937309_43937503_43938888_43939100_43940656_43940731_43942273_43942430_43943143
ES_00038347	chr4	+	1039	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	-8	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ES_00038348	chr4	+	1099	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
ES_00038349	chr4	+	685	1	FSM	ENSMUSG00000084274.3	ENSMUST00000148026.2	306	1	195	-574	195	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTATGAAGTTGTTTAT	99	False	NA	NA	False	ATTAAA	-35	NA	44123432	44124117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44123400_44124100
ES_00038351	chr4	+	244	2	Intergenic	novelGene_2762	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCCGGTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	44252965	44294066	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_44252992_44293848
ES_00038355	chr4	+	2424	9	NIC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	46.0867049700887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	5	True	NA	NA	False	AATAAA	-14	NA	44756650	44932203	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_44756697_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
ES_00038356	chr4	+	4193	3	FSM	ENSMUSG00000035649.18	ENSMUST00000147272.8	4251	3	54	4	54	-4	multi-exon	FALSE	canonical	3	133	junction_2	10.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGTTTATTGTTACA	NA	False	NA	NA	False	AATAAA	-22	NA	44923171	44932211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44926071_44929117_44929236_44931035
ES_00038357	chr4	+	4964	4	FSM	ENSMUSG00000035649.18	ENSMUST00000126968.2	586	4	-2794	-1584	83	731	multi-exon	FALSE	canonical	3	7	junction_2	68.1485305947401	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATGAATTTATTTAATG	NA	False	NA	NA	False	AATAAA	-19	NA	44923200	44932946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44926071_44929117_44929236_44929580_44929646_44931035
ES_00038358	chr4	+	1293	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	-13	0	-13	0	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	NA	False	NA	13	True	NA	NA	NA	44981381	44990734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
ES_00038363	chr4	+	7216	8	FSM	ENSMUSG00000035572.17	ENSMUST00000107798.4	2421	8	0	-4795	0	-8	multi-exon	FALSE	canonical	3	9	junction_3	29.3250606763817	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCACGAATCCAGAATGTAG	83	False	NA	42	True	NA	NA	NA	45342181	45379751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_45342728_45348105_45348220_45349536_45349592_45359760_45359959_45370305_45370509_45372663_45372775_45372923_45373070_45373908
ES_00038380	chr4	+	548	2	Intergenic	novelGene_2770	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	71	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTGTCTTGGTTCCTTC	NA	False	NA	18	True	NA	NA	NA	48513761	48519023	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_48514080_48518793
ES_00038383	chr4	+	1822	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	-226	1	194	0	multi-exon	FALSE	canonical	3	153	junction_1	75.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	113	False	NA	14	True	NA	NA	NA	48540272	48561918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_48540569_48552379_48552831_48560843
ES_00038385	chr4	+	2461	10	FSM	ENSMUSG00000028347.15	ENSMUST00000030032.13	2461	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_4	114.355952842942	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTGCTTTGTGTGCTCA	12	True	NA	NA	False	AATATA	-15	NA	48585173	48663131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617234_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ES_00038386	chr4	+	2331	10	NNC	ENSMUSG00000028347.15	novel	2461	10	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_7	136.341075574784	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTGCTTTGTGTGCTCA	-2	True	NA	NA	False	AATATA	-15	NA	48585300	48663131	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650300_48650419_48658773_48658933_48662000
ES_00038387	chr4	+	1426	10	FSM	ENSMUSG00000028347.15	ENSMUST00000130834.8	1426	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_4	69.1178989163971	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAATCTAGAGGAC	248	False	NA	NA	False	AGTAAA	-24	NA	48585550	48662470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ES_00038391	chr4	+	4333	20	FSM	ENSMUSG00000028309.15	ENSMUST00000167496.8	4312	20	-21	0	-21	0	multi-exon	FALSE	canonical	3	48	junction_4	16.450883834839	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTGTTTGTGGTGTTC	34	False	NA	4	True	ATTAAA	-16	NA	49632038	49656886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ES_00038392	chr4	+	4169	21	FSM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	-15	0	-9	0	multi-exon	FALSE	canonical	3	46	junction_1	16.7996279720713	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTTGTGGTGTTCT	-28	True	NA	5	True	ATTAAA	-17	NA	49632050	49656887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ES_00038393	chr4	+	5426	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-22	0	-22	0	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	NA	False	NA	21	True	ATTAAA	-21	NA	52439220	52488260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
ES_00038398	chr4	+	916	3	Intergenic	novelGene_2776	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	53	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGCACACACATTAGTGG	NA	False	NA	24	True	AGTAAA	-10	NA	53339917	53342778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_53340568_53340695_53340778_53342594
ES_00038399	chr4	+	3120	16	FSM	ENSMUSG00000028412.18	ENSMUST00000102911.10	3102	16	-29	11	-29	-11	multi-exon	FALSE	canonical	3	11	junction_15	93.8563914830643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATCCATTATGCGTTG	NA	False	NA	NA	False	NA	NA	NA	53440383	53622467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_53440717_53481463_53481554_53491387_53491531_53517544_53517682_53528654_53528749_53536322_53536493_53538389_53538480_53541300_53541441_53542364_53542552_53543541_53543708_53544540_53544698_53545684_53545769_53553485_53553624_53560914_53561152_53563140_53563222_53621594
ES_00038401	chr4	+	4382	16	FSM	ENSMUSG00000028412.18	ENSMUST00000107651.9	4382	16	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_12	25.9286199658473	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTATGTGTGTAACCAT	138	False	NA	33	True	AATAAA	-33	NA	53440670	53567818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_53440717_53481463_53481554_53491387_53491531_53517544_53517682_53528654_53528749_53536322_53536493_53538389_53538480_53541300_53541441_53542364_53542552_53543541_53543708_53544540_53544698_53545684_53545769_53553485_53553624_53560914_53561152_53563140_53563222_53565396
ES_00038404	chr4	+	6240	10	FSM	ENSMUSG00000028414.18	ENSMUST00000221657.2	6241	10	0	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_1	14.3819159423506	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGTGTTTGTTTTTG	17	True	NA	4	True	AATAAA	-17	NA	53714187	53765784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_53714547_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ES_00038413	chr4	+	4285	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	-10	0	-6	0	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	-10	True	NA	13	True	AATAAA	-22	NA	56802338	56809601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ES_00038415	chr4	+	6671	3	FSM	ENSMUSG00000038729.25	ENSMUST00000102903.8	6650	3	-21	0	-21	0	multi-exon	FALSE	canonical	3	18	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTTTTTTTCT	-3	True	NA	27	True	ATTAAA	-18	NA	57845225	57896982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_57845307_57854561_57857038_57892868
ES_00038416	chr4	+	6881	4	NNC	ENSMUSG00000038729.25	novel	6830	4	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	6.94422221866655	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTTTTTTTCT	-3	True	NA	27	True	ATTAAA	-18	NA	57845225	57896982	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_57845338_57854561_57857038_57883023_57883203_57892868
ES_00038417	chr4	+	6856	4	FSM	ENSMUSG00000038729.25	ENSMUST00000107598.9	6830	4	-28	2	-27	0	multi-exon	FALSE	canonical	3	16	junction_3	1.69967317119759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTTTTTTTCT	-9	True	NA	27	True	ATTAAA	-18	NA	57845219	57896982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_57845307_57854561_57857038_57883023_57883203_57892868
ES_00038418	chr4	+	4023	4	FSM	ENSMUSG00000070972.14	ENSMUST00000095070.4	4023	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	16.2685791225499	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTAGTCCTTTCTTCA	3	True	NA	17	True	TATAAA	-17	NA	59003171	59025573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_59003558_59017669_59017823_59020058_59020530_59022560
ES_00038419	chr4	+	1189	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	0	3	0	-3	multi-exon	FALSE	canonical	3	257	junction_2	16.5	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTAGTTTGTGTTTGGTG	1876	False	NA	32	True	AATAAA	-32	NA	59035087	59041900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_59035319_59039226_59039359_59041074
ES_00038420	chr4	+	4012	9	FSM	ENSMUSG00000028381.9	ENSMUST00000030074.8	4012	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_7	33.8664657146269	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAGTAATGGACTGGCTT	9	False	NA	NA	False	AATAAA	-19	NA	59189256	59222833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222
ES_00038421	chr4	+	3733	10	NNC	ENSMUSG00000028381.9	novel	4012	9	NA	NA	0	57898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	82.8462803802289	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAAGTGATATC	60	False	NA	NA	False	NA	NA	NA	59189557	59280731	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222_59222828_59280703
ES_00038434	chr4	+	1772	7	FSM	ENSMUSG00000028392.16	ENSMUST00000030088.12	1757	7	-16	1	-16	-1	multi-exon	FALSE	canonical	3	6	junction_6	6.83130051063973	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTTTGCTGGTAACT	9540	False	NA	27	True	AATAAA	-38	NA	62398273	62415534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234_62414809_62415218
ES_00038436	chr4	+	5001	18	FSM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	-154	-2775	-154	374	multi-exon	FALSE	canonical	3	19	junction_17	16.975863182644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGTCTCTTCCACGGA	NA	False	NA	NA	False	NA	NA	NA	62501683	62578451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62575339
ES_00038438	chr4	+	4345	23	NIC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-130	0	combination_of_known_junctions	TRUE	canonical	2	39	junction_18	14.1957973061405	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTGTATTCCTGGT	NA	False	NA	1	True	AATAAA	-21	NA	62501707	62621255	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ES_00038443	chr4	+	3179	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	12	0	12	0	multi-exon	FALSE	canonical	3	41	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523234	65534475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_65523307_65531368
ES_00038444	chr4	+	5612	1	Intergenic	novelGene_2793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTCAGATCATGATAATA	NA	False	NA	NA	False	NA	NA	NA	66820303	66825915	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_66820300_66825900
ES_00038455	chr4	+	950	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	-8	0	-1	0	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	83335959	83360323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
ES_00038457	chr4	+	2014	8	FSM	ENSMUSG00000028483.14	ENSMUST00000137512.8	1993	8	-21	0	-1	0	multi-exon	FALSE	canonical	2	14	junction_2	136.304730628972	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATCTGTTTAAAAGATT	NA	False	NA	NA	False	AATAAA	-13	NA	83335959	83372270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_83336292_83336942_83337021_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
ES_00038461	chr4	+	2822	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123677	85307617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
ES_00038465	chr4	+	7807	32	NIC	ENSMUSG00000038024.18	novel	7940	33	NA	NA	-11	3	combination_of_known_junctions	FALSE	canonical	3	33	junction_19	10.1503781653229	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCTGTTGAATTTCTAA	8160	False	NA	NA	False	AATAAA	-19	NA	86666780	86768843	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_86667150_86692474_86692797_86695949_86696203_86698071_86698142_86699778_86699949_86704284_86704524_86707061_86707129_86708140_86708200_86709563_86709709_86713358_86713535_86716280_86716382_86717589_86717809_86721143_86721290_86723606_86723643_86723731_86723863_86725664_86725798_86729649_86729857_86730561_86730691_86731629_86731775_86738098_86738219_86739563_86739708_86743154_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
ES_00038469	chr4	+	5808	44	FSM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	-17	0	-16	0	multi-exon	FALSE	canonical	0	0	junction_35	26.0666035463672	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGTGACTTTTATTTT	NA	False	NA	10	True	AGTAAA	-19	NA	88012849	88329243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995_88115254_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
ES_00038474	chr4	+	390	1	FSM	ENSMUSG00000063314.6	ENSMUST00000119560.2	411	1	46	-25	46	25	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTCAAAAGAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	94487667	94488057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_94487700_94488100
ES_00038478	chr4	+	1892	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	-1	0	-1	0	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445742	95815176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ES_00038484	chr4	+	3182	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	8	intron_retention	FALSE	canonical	3	192	junction_2	120.477752671972	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98614970	98626725	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
ES_00038485	chr4	+	3079	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	184.711937892492	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98615029	98626725	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98625038_98625061
ES_00038487	chr4	+	3162	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-14	-8	0	8	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98614970	98626725	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
ES_00038491	chr4	+	3527	9	FSM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	145.930152384625	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-24	NA	98812115	98823780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ES_00038492	chr4	+	3280	8	NIC	ENSMUSG00000028560.12	novel	3577	9	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	214	junction_1	120.154492387161	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAATGTGTGATTTTTTT	NA	False	NA	12	True	AATAAA	-18	NA	98812117	98823774	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_98812481_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ES_00038494	chr4	+	2792	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACACTTTTGTTTTGG	NA	False	NA	9	True	NA	NA	NA	99082383	99148020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
ES_00038498	chr4	+	2527	1	FSM	ENSMUSG00000067261.5	ENSMUST00000087285.5	2324	1	-149	-54	-149	54	mono-exon	FALSE	NA	NA	NA	NA	NA	507	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTTTAATTAGGTGTC	NA	False	NA	9	True	AATAAA	-19	NA	99544386	99546913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_99544400_99546900
ES_00038499	chr4	+	3146	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	-67	0	-66	0	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603834	99651697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ES_00038507	chr4	+	2923	8	FSM	ENSMUSG00000035275.15	ENSMUST00000106955.2	2893	8	15	-45	15	45	multi-exon	FALSE	canonical	3	27	junction_5	8.41524370001322	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGCATAACTTTTGTTGA	NA	False	NA	NA	False	TATAAA	-4	NA	100926194	100992598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_100926527_100953449_100953517_100959804_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051
ES_00038510	chr4	+	4081	5	ISM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	421	0	7	0	3prime_fragment	FALSE	canonical	3	206	junction_2	35.8355619462009	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276936	101324192	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ES_00038513	chr4	+	5238	19	NIC	ENSMUSG00000028528.18	novel	5127	20	NA	NA	-160	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	23.5903830583462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTAGAAATATACATTA	NA	False	NA	6	True	ATTAAA	-14	NA	101353667	101499995	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_101353961_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ES_00038515	chr4	+	5774	19	FSM	ENSMUSG00000028528.18	ENSMUST00000038207.12	5258	19	-517	1	-517	0	multi-exon	FALSE	canonical	2	7	junction_1	26.7460046629791	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTAGAAATATACATTA	8679	False	NA	6	True	ATTAAA	-14	NA	101364550	101499995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_101365380_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ES_00038517	chr4	+	5071	19	FSM	ENSMUSG00000028528.18	ENSMUST00000106933.2	5191	19	137	-17	137	0	multi-exon	FALSE	canonical	1	1	junction_1	28.0267178524394	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAGAAATATACATTAT	NA	False	NA	7	True	ATTAAA	-15	NA	101407927	101499996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_101408053_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ES_00038525	chr4	+	4130	15	NIC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	2	-633	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	47.5884246772816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCACCCTTTGTTCAAAA	2886	False	NA	NA	False	NA	NA	NA	102971960	103022313	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_102972021_102972756_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ES_00038527	chr4	+	4739	13	FSM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	10	3	10	0	multi-exon	FALSE	canonical	3	89	junction_1	18.0662361572323	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTGTGTGGTGTCTA	353	False	NA	12	True	ATTAAA	-13	NA	102976492	103022946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ES_00038530	chr4	+	2000	10	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	38.2935381197454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCATCTGTCCTTGCCT	42	False	NA	6	True	AATAAA	-18	NA	103171008	103223630	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_103171081_103173440_103173536_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
ES_00038532	chr4	+	1175	7	ISM	ENSMUSG00000028519.17	ENSMUST00000106830.9	5278	15	-35	64456	-35	6	5prime_fragment	FALSE	canonical	3	42	junction_1	2.40947204913349	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTGTAACTTTCTTAGA	NA	False	NA	14	True	AATAAA	-21	NA	104224751	104537585	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
ES_00038540	chr4	+	2288	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106782.2	502	2	-45	-1741	-45	0	multi-exon	FALSE	canonical	3	39	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508220	106512477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_106508346_106510314
ES_00038541	chr4	+	2269	2	FSM	ENSMUSG00000043572.8	ENSMUST00000058905.8	2191	2	-80	2	-43	0	multi-exon	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508222	106512477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_106508329_106510314
ES_00038542	chr4	+	3046	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106781.2	3046	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508294	106512477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_106508329_106509465
ES_00038544	chr4	+	3195	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCCTGACATACTTGT	NA	False	NA	16	True	ATTAAA	-20	NA	106768666	106906891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
ES_00038550	chr4	+	601	6	FSM	ENSMUSG00000063172.14	ENSMUST00000152717.8	581	6	-20	0	-20	0	multi-exon	FALSE	canonical	0	0	junction_1	155.089135660755	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTACAACAAAATGCTC	NA	False	NA	-93	True	NA	NA	NA	107110769	107137034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107110925_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ES_00038552	chr4	+	630	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	-22	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	False	NA	-2	True	ATTAAA	-9	NA	107111099	107137125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ES_00038560	chr4	+	4555	19	FSM	ENSMUSG00000028613.16	ENSMUST00000030356.10	4555	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	28.291090513961	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTATAGAATTTTCTTCA	NA	False	NA	9	True	AATAAA	-18	NA	107659510	107731096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107703435_107703817_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107727208_107727386_107729469
ES_00038564	chr4	+	3419	13	ISM	ENSMUSG00000028613.16	ENSMUST00000238570.2	3532	16	16459	-153	0	0	3prime_fragment	FALSE	canonical	3	46	junction_4	10.8269211792745	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTATAGAATTTTCTTC	NA	False	NA	8	True	AATAAA	-17	NA	107704640	107731095	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ES_00038568	chr4	+	2795	6	FSM	ENSMUSG00000028608.16	ENSMUST00000132417.8	2795	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	262.709725743072	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747094	107754315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107747400_107748661_107748719_107749156_107749234_107749418_107749451_107750530_107750609_107752069
ES_00038569	chr4	+	1552	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	-1	0	0	0	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	False	NA	23	True	NA	NA	NA	107747094	107754999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ES_00038573	chr4	+	3562	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	-29	-2214	0	1977	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCCTCAAATTGGAGGGAA	NA	False	NA	NA	False	NA	NA	NA	108022633	108038482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ES_00038582	chr4	+	5868	30	FSM	ENSMUSG00000034610.15	ENSMUST00000097925.9	5865	30	-3	0	-3	0	multi-exon	FALSE	canonical	3	27	junction_29	34.6155374652357	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTAATTCATCTGGTA	NA	False	NA	21	True	AATAAA	-21	NA	108317203	108416618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406422_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415914
ES_00038588	chr4	+	4311	31	FSM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_11	90.2713440442511	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ES_00038589	chr4	+	3784	33	FSM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_3	173.040085222326	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGACGTGTGTGCAT	NA	False	NA	39	True	AATAAA	-31	NA	108857966	108918358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108858362_108870706_108871038_108873848_108873983_108874823_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ES_00038596	chr4	+	2802	25	FSM	ENSMUSG00000028552.14	ENSMUST00000175776.8	2802	25	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_9	34.7439043414653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTATCTGTCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	109137608	109242662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178523_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
ES_00038600	chr4	+	1132	6	FSM	ENSMUSG00000010517.8	ENSMUST00000155204.2	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	116.535659778456	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTTTGGTCAAGTAACT	NA	False	NA	NA	False	NA	NA	NA	109697981	109782575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494
ES_00038607	chr4	+	2239	13	FSM	ENSMUSG00000034401.17	ENSMUST00000084354.4	2239	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	28.7691964897643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCCACACTTTAAAGGGA	NA	False	NA	62	True	NA	NA	NA	111577401	111686381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663180_111679937_111680030_111685382
ES_00038610	chr4	+	5478	18	NIC	ENSMUSG00000028718.17	novel	5368	18	NA	NA	-9	-7	combination_of_known_junctions	TRUE	canonical	0	0	junction_12	23.4398294690113	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACTGAAAAAAACTGACT	NA	False	NA	NA	False	ATTAAA	-10	NA	114857369	114900386	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114878976_114879191_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ES_00038615	chr4	+	4670	12	FSM	ENSMUSG00000034210.15	ENSMUST00000074425.13	4300	12	-370	0	-41	0	multi-exon	FALSE	canonical	3	13	junction_11	41.468099857422	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCTGACTAGAATTTT	NA	False	NA	29	True	AATAAA	-18	NA	115594899	115634524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034_115631203_115632257
ES_00038618	chr4	+	1390	9	FSM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	-13	0	-11	0	multi-exon	FALSE	canonical	3	99	junction_1	26.830195209875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGCTTATAGCGTGTC	NA	False	NA	NA	False	TTTAAA	-12	NA	115696406	115731067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407
ES_00038627	chr4	+	2739	22	FSM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	-20	0	-20	0	multi-exon	TRUE	canonical	3	321	junction_9	36.7984644262092	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTGTATTTTGTAATA	NA	False	NA	6	True	ATTAAA	-16	NA	116007694	116017041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
ES_00038635	chr4	+	3611	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	-23	0	-23	0	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTTTACTGAAGGAA	NA	False	NA	12	True	AATAAA	-18	NA	116414831	116451079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
ES_00038638	chr4	+	258	1	Intergenic	novelGene_2856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCCAACAAC	NA	False	NA	NA	False	NA	NA	NA	116487094	116487352	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116487100_116487400
ES_00038644	chr4	+	1515	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	-306	4	0	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5671	False	NA	11	True	AATAAA	-15	NA	116565820	116572296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ES_00038645	chr4	+	1561	10	NIC	ENSMUSG00000028689.15	novel	1237	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	19	junction_2	21.1980665319118	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCTCTGTAAATCTTG	5655	False	NA	16	True	AATAAA	-20	NA	116565804	116572301	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568482_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ES_00038650	chr4	+	1730	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664936	116676628	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ES_00038652	chr4	+	689	3	FSM	ENSMUSG00000028687.18	ENSMUST00000135449.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTTCTGGGCTTTCTC	6399	False	NA	35	True	AATAAA	-25	NA	116674894	116676637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116675003_116675084_116675480_116676451
ES_00038659	chr4	+	2151	4	FSM	ENSMUSG00000028683.15	ENSMUST00000155181.2	2230	4	35	44	35	-44	multi-exon	FALSE	canonical	3	600	junction_3	35.6495285928003	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTGAGTTCAAGGTCAGC	NA	False	NA	NA	False	NA	NA	NA	116924694	116944459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116926019_116927835_116927985_116938754_116938859_116943885
ES_00038665	chr4	+	1089	7	NNC	ENSMUSG00000033423.17	novel	596	4	NA	NA	-109	-1	at_least_one_novel_splicesite	TRUE	canonical	3	91	junction_1	242.081769931842	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAGTGTGTCTGGAGCC	NA	False	NA	8	True	AATAAA	-15	NA	117407452	117531477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_117407560_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00038666	chr4	+	1313	8	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-46	-8	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_1	221.525785111774	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGCCACCCTTGTG	NA	False	NA	17	True	AATAAA	-24	NA	117407515	117531486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_117407560_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00038667	chr4	+	1719	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	182.065535934179	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117407561	117531494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00038669	chr4	+	1336	8	FSM	ENSMUSG00000033423.17	ENSMUST00000146384.8	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	303.228680459255	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117421954	117531494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_117422096_117439796_117439914_117444981_117445178_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00038674	chr4	+	853	7	FSM	ENSMUSG00000006395.17	ENSMUST00000106393.8	843	7	-10	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6249253283145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217185	118219941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_118217429_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ES_00038678	chr4	+	1169	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	-24	0	5	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266538	118272308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ES_00038690	chr4	+	3188	15	FSM	ENSMUSG00000028641.17	ENSMUST00000121111.9	3188	15	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_5	38.1110755769586	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGTGTGTGGTTTGTG	NA	False	NA	1	True	NA	NA	NA	119090111	119106169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_119090628_119092442_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098879_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105087
ES_00038691	chr4	+	624	6	FSM	ENSMUSG00000028641.17	ENSMUST00000131875.8	624	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	148.701580354749	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGGTGATTCCCAAGA	NA	False	NA	NA	False	NA	NA	NA	119092540	119098692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_119092596_119093970_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678
ES_00038692	chr4	+	200	1	Intergenic	novelGene_2869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGCGAGAGGTGGTGCT	NA	False	NA	-30	True	NA	NA	NA	119227053	119227253	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_119227100_119227300
ES_00038694	chr4	+	4660	12	FSM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	23.2197550545519	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGCCTGATGGTCTGT	NA	False	NA	23	True	AATAAA	-19	NA	119396884	119486316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
ES_00038695	chr4	+	3514	17	FSM	ENSMUSG00000000085.17	ENSMUST00000000087.13	3353	17	-161	0	-135	0	multi-exon	FALSE	canonical	3	47	junction_13	8.94776508408664	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120262342	120387381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
ES_00038702	chr4	+	1966	4	FSM	ENSMUSG00000032890.18	ENSMUST00000132895.8	2099	4	0	133	0	-133	multi-exon	FALSE	canonical	3	46	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCAGGTGGTCTTGGATT	NA	False	NA	NA	False	NA	NA	NA	120712012	120741508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_120712320_120729673_120729848_120735034_120735283_120740271
ES_00038706	chr4	+	265	1	FSM	ENSMUSG00000080929.2	ENSMUST00000119358.2	240	1	84	-109	84	109	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCGCTGTATTCTTCACAA	NA	False	NA	NA	False	NA	NA	NA	122819709	122819974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_122819700_122820000
ES_00038708	chr4	+	3501	2	FSM	ENSMUSG00000028654.14	ENSMUST00000030407.8	3501	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	3626	False	NA	NA	False	AATAAA	-18	NA	122889891	122896278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_122890812_122893697
ES_00038710	chr4	+	2029	10	FSM	ENSMUSG00000028653.17	ENSMUST00000147165.8	1964	10	-65	0	-65	0	multi-exon	FALSE	canonical	3	16	junction_8	29.573929126016	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910324	122948742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
ES_00038712	chr4	+	3162	14	FSM	ENSMUSG00000011257.20	ENSMUST00000106243.8	3111	14	-144	93	-144	0	multi-exon	FALSE	canonical	3	64	junction_10	102.125111806737	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176473	123192625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ES_00038714	chr4	+	3019	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176703	123192625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ES_00038715	chr4	+	2700	14	FSM	ENSMUSG00000011257.20	ENSMUST00000078734.12	2700	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_10	114.785830929817	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176887	123192625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ES_00038717	chr4	+	1146	3	FSM	ENSMUSG00000011257.20	ENSMUST00000146156.2	1146	3	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	27	False	NA	8	True	AATAAA	-31	NA	123190972	123192625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123191566_123191653_123191887_123192305
ES_00038721	chr4	+	2822	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	-18	-1119	-18	1119	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGATAGAGCACTCACA	NA	False	NA	NA	False	NA	NA	NA	123798606	123807181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
ES_00038722	chr4	+	3664	4	FSM	ENSMUSG00000028647.14	ENSMUST00000137685.2	500	4	-176	-2988	46	1961	multi-exon	FALSE	canonical	3	284	junction_3	24.8596057893121	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTTAAAGTATATAGTTAT	NA	False	NA	NA	False	TATAAA	-10	NA	123798752	123808023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123799100_123803426_123803476_123803629_123803760_123804885
ES_00038733	chr4	+	3847	25	FSM	ENSMUSG00000028894.19	ENSMUST00000184454.8	3834	25	-13	0	1	0	multi-exon	FALSE	non_canonical	0	0	junction_20	70.428598594605	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGACTATGGTTCTCTCT	NA	False	NA	16	True	AATATA	-24	NA	124635651	124695298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124635710_124636256_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124687394_124687448_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
ES_00038736	chr4	+	814	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	-33	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAATTCATGTTTATA	319	False	NA	4	True	AATAAA	-15	NA	124696341	124699171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124696437_124698452
ES_00038737	chr4	+	7631	11	FSM	ENSMUSG00000028890.14	ENSMUST00000030723.3	7631	11	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	11.1103555298649	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTCACAGTCCAGCCAC	319	False	NA	NA	False	NA	NA	NA	124696341	124743593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736320_124736385_124737939
ES_00038748	chr4	+	4550	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACTGCTGATACTGAAAT	NA	False	NA	NA	False	NA	NA	NA	124978926	125007031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
ES_00038749	chr4	+	4645	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	-67	-3524	-37	0	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACTGCTGATACTGAAAT	NA	False	NA	NA	False	NA	NA	NA	124978889	125007031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
ES_00038750	chr4	+	889	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	-17	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978926	125003682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ES_00038751	chr4	+	1081	6	NIC	ENSMUSG00000028863.14	novel	872	6	NA	NA	-42	389	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	120.208818312135	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATTCTTGAATTCTTTT	NA	False	NA	24	True	ATTAAA	-30	NA	124978884	124997685	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222
ES_00038761	chr4	+	362	4	FSM	ENSMUSG00000042608.16	ENSMUST00000139524.2	362	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	161.228616153171	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTGTGCAGTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	125997793	126018904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_125997940_126012066_126012134_126017508_126017629_126018875
ES_00038762	chr4	+	1896	2	FSM	ENSMUSG00000050212.5	ENSMUST00000106150.3	1144	2	-752	0	36	0	multi-exon	FALSE	canonical	3	339	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	6378	False	NA	11	True	AATGAA	-6	NA	126041572	126043658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126042839_126043028
ES_00038763	chr4	+	1653	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	36	0	36	0	multi-exon	FALSE	canonical	3	53	junction_1	143	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGTCTCTCACTGGTTA	6378	False	NA	20	True	AATGAA	-15	NA	126041572	126043667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126042425_126042676_126042839_126043028
ES_00038764	chr4	+	1364	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	47.5	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	6601	False	NA	21	True	AATGAA	-16	NA	126041795	126043668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126042425_126042743_126042839_126043028
ES_00038765	chr4	+	729	2	NIC	ENSMUSG00000050212.5	novel	1144	2	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7131	False	NA	11	True	AATGAA	-6	NA	126042325	126043658	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_126042425_126043028
ES_00038782	chr4	+	5241	13	NNC	ENSMUSG00000028820.14	novel	925	10	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_10	302.369071757605	339	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126915125	126930806	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619_126926599_126929600_126929648_126930355_126930443_126930724
ES_00038783	chr4	+	925	10	FSM	ENSMUSG00000028820.14	ENSMUST00000146285.8	925	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_7	318.457392928962	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126917319	126930806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
ES_00038784	chr4	+	574	3	FSM	ENSMUSG00000085334.8	ENSMUST00000130659.8	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	16	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126929242	126930806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126929648_126930355_126930443_126930724
ES_00038790	chr4	+	5017	14	NIC	ENSMUSG00000042408.14	novel	4210	15	NA	NA	0	0	intron_retention	TRUE	canonical	3	69	junction_3	8.41103811251486	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCCTTTATGTTGGTGA	2744	False	NA	17	True	NA	NA	NA	126971175	127018163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
ES_00038791	chr4	+	4210	15	FSM	ENSMUSG00000042408.14	ENSMUST00000046751.13	4210	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	19.4952898550038	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCCTTTATGTTGGTGA	2744	False	NA	17	True	NA	NA	NA	126971175	127018163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126971394_126972200_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
ES_00038801	chr4	+	2444	7	NIC	ENSMUSG00000028796.18	novel	2535	7	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	3	61	junction_2	50.0513625078168	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTCTGTGGCTTTCTCCC	NA	False	NA	14	True	AATAAA	-15	NA	128621367	128646668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_128621664_128637146_128637255_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
ES_00038807	chr4	+	2723	9	FSM	ENSMUSG00000028793.16	ENSMUST00000168461.8	2532	9	-191	0	-191	0	multi-exon	FALSE	canonical	3	132	junction_2	17.2005632175228	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATGTCACTGTCCTTGG	NA	False	NA	16	True	AATAAA	-19	NA	128951872	128978319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_128952690_128965529_128965736_128967294_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134_128974343_128976539_128976672_128977520
ES_00038808	chr4	+	1466	7	ISM	ENSMUSG00000028793.16	ENSMUST00000097874.9	1992	9	-405	3977	0	0	5prime_fragment	FALSE	canonical	3	28	junction_2	46.5247843149816	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTAGAGAGGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	128952201	128974342	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_128952690_128965529_128965736_128967291_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134
ES_00038814	chr4	+	618	6	FSM	ENSMUSG00000057572.16	ENSMUST00000106047.4	618	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	246.415421595321	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229839	129240826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ES_00038818	chr4	+	558	3	FSM	ENSMUSG00000078554.3	ENSMUST00000106043.3	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGCTGGCCGTGTATG	2238	False	NA	NA	False	AATAAA	-25	NA	129384982	129385749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129385129_129385207_129385355_129385484
ES_00038825	chr4	+	1542	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	-23	0	-3	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3173	False	NA	9	True	AATAAA	-9	NA	129494469	129502314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
ES_00038832	chr4	+	3660	6	FSM	ENSMUSG00000028788.15	ENSMUST00000030578.14	3646	6	0	-14	0	-11	multi-exon	FALSE	canonical	3	460	junction_1	910.936792538319	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCACTCCTAAACAGTT	NA	False	NA	29	True	AATAAA	-30	NA	129714013	129743785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
ES_00038837	chr4	+	810	1	FSM	ENSMUSG00000070729.6	ENSMUST00000118024.2	810	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAAATAACTTGCCCTG	NA	False	NA	NA	False	NA	NA	NA	129792885	129793695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129792900_129793700
ES_00038844	chr4	+	1813	6	NNC	ENSMUSG00000028779.17	novel	1551	5	NA	NA	-1198	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	90.6258241341837	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	8080	False	NA	25	True	AATAAA	-32	NA	130000150	130021927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130000320_130001255_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ES_00038855	chr4	+	5389	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_8	122.217214904643	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390631	130508875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00038857	chr4	+	5262	20	FSM	ENSMUSG00000028580.16	ENSMUST00000105992.9	5058	20	-204	0	-166	0	multi-exon	TRUE	canonical	3	63	junction_3	153.52394310997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390465	130508873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00038858	chr4	+	4614	18	FSM	ENSMUSG00000028580.16	ENSMUST00000105991.9	4614	18	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	156.174288231124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390669	130508873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00038860	chr4	+	5333	22	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_8	114.255134797804	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390681	130508875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00038865	chr4	+	1994	8	FSM	ENSMUSG00000040533.8	ENSMUST00000102576.4	2001	8	0	7	0	-7	multi-exon	FALSE	canonical	0	0	junction_7	5.36808406515884	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTGGATGGAATTAGTG	1491	False	NA	NA	False	AATAAA	-25	NA	130671695	130682779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681728_130682277
ES_00038876	chr4	+	284	1	FSM	ENSMUSG00000070717.2	ENSMUST00000094662.2	2296	1	486	1526	486	-1526	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACGCCCAGCCTAGAGCA	NA	False	NA	NA	False	GGGGCT	-18	NA	131802493	131802777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_131802500_131802800
ES_00038881	chr4	+	1462	2	FSM	ENSMUSG00000086290.10	ENSMUST00000137343.9	1416	2	-44	-2	-2	0	multi-exon	FALSE	canonical	3	139	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035943	132038335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132036219_132037148
ES_00038882	chr4	+	608	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	-2	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ES_00038883	chr4	+	886	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	10	0	-2	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035943	132038335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
ES_00038884	chr4	+	1581	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232301.2	1538	4	-43	0	-2	0	multi-exon	FALSE	canonical	3	202	junction_2	0.471404520791032	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035943	132038335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132037215_132037461_132037527_132037761_132037816_132038144
ES_00038885	chr4	+	1215	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	139	junction_1	32	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035943	132038335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132036219_132037148_132037215_132037461
ES_00038889	chr4	+	1415	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	-14	0	-14	0	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	2317	False	NA	19	True	AATAAA	-19	NA	132262846	132281053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ES_00038894	chr4	+	5170	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	-10	0	-10	0	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTTTCTCCTTTGTCTTT	NA	False	NA	21	True	AATAAA	-17	NA	132366346	132452076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ES_00038898	chr4	+	202	2	Antisense	novelGene_ENSMUSG00002076011.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATATTAGGTATGT	1629	False	NA	NA	False	NA	NA	NA	132625955	132685719	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_132626008_132685569
ES_00038908	chr4	+	1041	7	FSM	ENSMUSG00000028862.7	ENSMUST00000134895.2	1062	7	21	0	21	0	multi-exon	FALSE	canonical	3	15	junction_2	3.91578004149024	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTCTTGGCAACTTC	420	False	NA	17	True	ATTAAA	-17	NA	132978180	132980239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
ES_00038911	chr4	+	581	3	Intergenic	novelGene_2959	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	4	198	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGAATTTATTTTGGT	NA	False	NA	NA	False	NA	NA	NA	133238413	133239715	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133238502_133238583_133238667_133239305
ES_00038914	chr4	+	1937	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	23.3666428910958	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCTGCCTGGTCATCAG	5471	False	NA	7	True	NA	NA	NA	133246273	133258099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_133246364_133255050_133256321_133257141_133257217_133257597
ES_00038916	chr4	+	2256	3	FSM	ENSMUSG00000037600.17	ENSMUST00000121797.2	2256	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	22.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACCTGCCTGGTCATCA	5591	False	NA	6	True	NA	NA	NA	133246393	133258098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133246423_133255050_133256321_133257141
ES_00038920	chr4	+	1367	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ES_00038925	chr4	+	1029	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	40.2478432824529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133809611	133819815	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_133809759_133809885_133809999_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ES_00038926	chr4	+	1043	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	39.282806530197	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133809614	133819815	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_133809759_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ES_00038927	chr4	+	1152	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13853	3	-7	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809615	133819812	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ES_00038930	chr4	+	973	8	NNC	ENSMUSG00000012126.17	novel	685	3	NA	NA	-5360	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	29.7506645441127	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	14	True	AATAAA	-14	NA	133845419	133854086	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_133845473_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ES_00038931	chr4	+	675	3	FSM	ENSMUSG00000012126.17	ENSMUST00000151407.2	685	3	10	0	10	0	multi-exon	FALSE	canonical	3	96	junction_1	9	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	14	True	AATAAA	-14	NA	133853247	133854086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133853592_133853676_133853818_133853896
ES_00038934	chr4	+	2023	7	FSM	ENSMUSG00000028836.15	ENSMUST00000081094.6	2023	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_3	13.4587848221483	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAGAGAAAAAGGGGGGA	2584	False	NA	NA	False	NA	NA	NA	134071019	134080497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
ES_00038937	chr4	+	2870	9	NIC	ENSMUSG00000037366.15	novel	2248	11	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	11.6270159542335	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGGCTGGCTTTCTTC	1829	False	NA	19	True	ATTAAA	-21	NA	134123680	134154723	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_134123736_134130280_134130416_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ES_00038944	chr4	+	1788	5	FSM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	-36	-3	-36	3	multi-exon	FALSE	canonical	3	162	junction_3	305.166348079207	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTGTGAATGGTAGTTT	NA	False	NA	12	True	NA	NA	NA	134650866	134654985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134654045_134654130_134654241
ES_00038945	chr4	+	2654	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	141	junction_3	314.200075588788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650955	134654982	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134654130_134654241
ES_00038946	chr4	+	2450	6	FSM	ENSMUSG00000037266.19	ENSMUST00000145364.8	2151	6	0	-299	0	0	multi-exon	FALSE	canonical	3	46	junction_4	379.006385170488	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650955	134654982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134653336_134654130_134654241
ES_00038949	chr4	+	1369	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTCTGTAACTTAAACA	NA	False	NA	NA	False	AATAAA	-24	NA	134658208	134664859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ES_00038955	chr4	+	4340	6	FSM	ENSMUSG00000028676.18	ENSMUST00000097844.9	3055	6	25	-1310	25	-1257	multi-exon	FALSE	canonical	0	0	junction_2	618.505101029894	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAACTGCAGCTGGAATA	4346	False	NA	NA	False	NA	NA	NA	135583082	135594436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590836_135590888_135591039
ES_00038956	chr4	+	2225	6	FSM	ENSMUSG00000028676.18	ENSMUST00000102544.9	2225	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	626.397190287441	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGATTCCTTAGTTC	4321	False	NA	14	True	AATAAA	-21	NA	135583057	135595693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590836_135590888_135594436
ES_00038957	chr4	+	3754	6	FSM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	623.730198082472	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	4321	False	NA	23	True	AATAAA	-28	NA	135583057	135597219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135594436
ES_00038960	chr4	+	3088	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_3	565.56856839428	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4706	False	NA	NA	False	AATAAA	-17	NA	135583442	135593126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589091_135589189_135590350_135590514_135590833_135590888_135591039
ES_00038961	chr4	+	4154	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	561.471875223209	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	4346	False	NA	23	True	AATAAA	-28	NA	135583082	135597219	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ES_00038978	chr4	+	2683	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038278	136067992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ES_00038979	chr4	+	21450	11	FSM	ENSMUSG00000066037.15	ENSMUST00000148843.10	21452	11	0	2	0	-2	multi-exon	FALSE	canonical	3	130	junction_1	138.01771625411	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGTGTTGTGCCTCAT	NA	False	NA	NA	False	AATAAA	-15	NA	136038278	136086756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ES_00038981	chr4	+	2647	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTGATTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	136038335	136068174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ES_00038984	chr4	+	7434	4	FSM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	3	1	3	0	multi-exon	FALSE	canonical	3	86	junction_2	34.7658836600865	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTGAGTCAGTGATGC	4160	False	NA	14	True	AATAAA	-20	NA	136197074	136276629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_136197162_136248651_136248755_136267666_136270830_136272548
ES_00038985	chr4	+	7523	5	FSM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	3	0	3	0	multi-exon	FALSE	canonical	3	55	junction_3	50.5488624995657	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTTGAGTCAGTGA	4160	False	NA	11	True	AATAAA	-17	NA	136197074	136276626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_136197162_136248651_136248755_136266435_136266528_136267666_136270830_136272548
ES_00038992	chr4	+	5747	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	-6	0	-6	0	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	497	False	NA	17	True	ATTAAA	-27	NA	137321444	137385842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00038994	chr4	+	1921	13	ISM	ENSMUSG00000043411.16	ENSMUST00000105839.8	2071	14	0	1921	0	0	5prime_fragment	FALSE	canonical	3	659	junction_9	171.710734634993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCGACAATGAAGGGGT	570	False	NA	NA	False	AATGAA	-27	NA	137321517	137350681	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584
ES_00038995	chr4	+	2067	14	FSM	ENSMUSG00000043411.16	ENSMUST00000105839.8	2071	14	0	4	0	-4	multi-exon	FALSE	canonical	3	659	junction_9	177.170128514572	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGGGGTGTTCCGTGCT	570	False	NA	NA	False	AATAAA	-2	NA	137321517	137352598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470
ES_00038996	chr4	+	5722	28	FSM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_19	271.050863574936	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	570	False	NA	17	True	ATTAAA	-27	NA	137321517	137385842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00039001	chr4	+	3168	23	FSM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	40.603123480388	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	9950	False	NA	11	True	AATAAA	-21	NA	137434832	137457172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137434972_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ES_00039006	chr4	+	4687	19	NIC	ENSMUSG00000057530.15	novel	728	5	NA	NA	60	3	combination_of_known_junctions	TRUE	canonical	3	26	junction_1	12.6238310789994	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGTGTGTCTGTCC	516	False	NA	19	True	AATAAA	-19	NA	137640841	137692543	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137640941_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
ES_00039009	chr4	+	3435	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	-322	0	9	0	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4243	False	NA	42	True	AATAAA	-40	NA	137943615	137970481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ES_00039010	chr4	+	3434	13	FSM	ENSMUSG00000028759.14	ENSMUST00000030541.13	3311	13	-123	0	-96	0	multi-exon	FALSE	canonical	3	41	junction_1	22.3320895176027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4442	False	NA	42	True	AATAAA	-40	NA	137943814	137970481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ES_00039011	chr4	+	3353	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	8	0	8	0	multi-exon	FALSE	canonical	3	21	junction_1	26.2752524039045	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	5077	False	NA	42	True	AATAAA	-40	NA	137944449	137970481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ES_00039021	chr4	+	4392	17	FSM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	-1074	0	-1057	0	multi-exon	FALSE	canonical	3	56	junction_1	8.00780868902348	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	NA	False	NA	24	True	AATAAA	-15	NA	138699141	138786478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
ES_00039025	chr4	+	6223	23	FSM	ENSMUSG00000078517.13	ENSMUST00000042096.15	4706	23	-23	-1494	0	0	multi-exon	FALSE	canonical	3	332	junction_13	34.6303979591618	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTATTTGTGTATAT	NA	False	NA	26	True	NA	NA	NA	139079897	139106041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
ES_00039033	chr4	+	4751	15	FSM	ENSMUSG00000040945.14	ENSMUST00000071169.9	3999	15	-752	0	-752	0	multi-exon	FALSE	canonical	3	24	junction_1	1566.2974279022	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	697	False	NA	28	True	AATAAA	-21	NA	140427099	140450531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140428061_140428454_140428516_140428821_140428962_140429457_140429747_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
ES_00039037	chr4	+	1232	6	FSM	ENSMUSG00000009863.15	ENSMUST00000129181.8	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	227.940694041235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGAGTTTGCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	140688711	140704107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425
ES_00039038	chr4	+	938	8	NNC	ENSMUSG00000009863.15	novel	1142	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	293	junction_1	1023.38288563579	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688711	140706504	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_140688788_140693811_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ES_00039041	chr4	+	3938	29	NNC	ENSMUSG00000036622.16	novel	3956	29	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	25.3341696738067	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1417	False	NA	12	True	AATAAA	-17	NA	140714198	140734641	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721625_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140733989_140734160_140734251
ES_00039043	chr4	+	5944	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	-10	0	-10	0	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTGTTTTATTAGTATA	NA	False	NA	15	True	AATAAA	-19	NA	140875213	140931373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
ES_00039046	chr4	+	3525	17	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	67	-16	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	14.2531520636665	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTTTTAGATGTATTTC	364	False	NA	-2	True	TTTAAA	-2	NA	140966876	140984859	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_140967182_140967942_140968056_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ES_00039048	chr4	+	3677	18	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	17.2438244298896	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTAGCATCTGCTTC	377	False	NA	14	True	TTTAAA	-18	NA	140966889	140984875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_140967182_140967942_140968056_140972128_140972278_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ES_00039050	chr4	+	3913	17	FSM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_7	17.9965274428152	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	NA	False	NA	8	True	AATAAA	-22	NA	141028550	141056695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_141028746_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
ES_00039052	chr4	+	2623	3	FSM	ENSMUSG00000006221.8	ENSMUST00000102486.5	2769	3	146	0	146	0	multi-exon	FALSE	canonical	3	12	junction_2	1	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGTGGAGACCCCAC	294	False	NA	NA	False	AATAAA	-13	NA	141148235	141152622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_141149292_141149811_141149946_141151189
ES_00039057	chr4	+	1707	1	Genic_Genomic	ENSMUSG00000048406.6	novel	NA	NA	NA	NA	-22	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAAAACAATTCAAATCA	NA	False	NA	NA	False	NA	NA	NA	141273477	141275184	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_141273500_141275200
ES_00039068	chr4	+	264	1	FSM	ENSMUSG00000081227.2	ENSMUST00000118877.2	561	1	252	45	252	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTCAGGAGCAACCAGT	3532	False	NA	NA	False	CATAAA	-8	NA	143397945	143398209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_143397900_143398200
ES_00039076	chr4	+	1775	6	FSM	ENSMUSG00000066026.15	ENSMUST00000154208.8	2337	6	0	562	0	2	multi-exon	FALSE	canonical	3	137	junction_1	25.4982352330509	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTTCACGTGTTTGGGA	5946	False	NA	14	True	AATAAA	-21	NA	144619646	144654217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
ES_00039078	chr4	+	2417	6	FSM	ENSMUSG00000066026.15	ENSMUST00000084184.7	1780	6	-637	0	-245	0	multi-exon	FALSE	canonical	3	17	junction_2	68.7185564458393	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCCTTCGTTCACGT	5451	False	NA	6	True	AATAAA	-13	NA	144619151	144654209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_144620280_144645220_144645365_144645799_144646075_144646410_144646650_144650475_144650602_144653704
ES_00039085	chr4	+	11190	2	Fusion	ENSMUSG00000083081.2_ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14315	4120	multi-exon	FALSE	canonical	3	59	junction_1	0	110	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGTTGTCCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	145158994	145187069	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145159152_145176036
ES_00039087	chr4	+	1575	3	FSM	ENSMUSG00000082082.2	ENSMUST00000120870.2	1575	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCAAATATATTGAAGG	NA	False	NA	NA	False	AAGAAA	-1	NA	145173309	145177458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145173342_145174456_145174578_145176036
ES_00039091	chr4	+	3019	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	-23	0	-23	0	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	871	False	NA	NA	False	NA	NA	NA	145237305	145265758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ES_00039096	chr4	+	2796	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	204.063715540024	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	926	False	NA	NA	False	NA	NA	NA	145237360	145265758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145264097_145264264
ES_00039098	chr4	+	841	4	NIC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	0	-2123	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	226.592634969061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACGAAAGTAGTAAAAGTG	5019	False	NA	NA	False	NA	NA	NA	145241453	145263635	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160
ES_00039099	chr4	+	1669	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9901	769	multi-exon	FALSE	canonical	3	94	junction_1	0	69	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTATTGTTGTCCTTT	7460	False	NA	NA	False	AGTAAA	-12	NA	145291196	145302500	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_145291368_145301002
ES_00039106	chr4	+	664	1	Genic_Genomic	ENSMUSG00000081885.2	novel	NA	NA	NA	NA	2467	88	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTAACTAGTAGTTCTT	NA	False	NA	NA	False	AAAAAG	-34	NA	145370393	145371057	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_145370400_145371100
ES_00039112	chr4	+	748	6	Fusion	ENSMUSG00000084350.2_ENSMUSG00000094417.2	novel	2413	3	NA	NA	-116	-2020	multi-exon	FALSE	canonical	2	3	junction_4	108.584713472938	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGTAAACAGTTTAAC	NA	False	NA	NA	False	AATACA	-3	NA	145501172	145554492	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ES_00039113	chr4	+	770	6	Fusion	ENSMUSG00000078500.4_ENSMUSG00000084350.2_ENSMUSG00000094417.2	novel	2413	3	NA	NA	-119	-779	multi-exon	FALSE	canonical	3	20	junction_4	106.368416365009	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTTCTACCATTAGT	NA	False	NA	NA	False	AATACA	-22	NA	145501169	145625753	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541406_145551778_145551837_145618982_145619087_145625498
ES_00039115	chr4	+	5377	7	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43800	2592	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	161.711334035545	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATGTAAACGCAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	145508006	145559104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145508210_145510590_145510684_145541336_145541406_145551778_145551837_145552678_145552806_145554256_145556466_145556486
ES_00039120	chr4	+	700	7	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43720	-2085	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_5	146.064673651396	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTCAATTTTCAAACTAA	NA	False	NA	NA	False	NA	NA	NA	145508086	145554427	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145508210_145510590_145510684_145516045_145516128_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ES_00039121	chr4	+	2413	3	FSM	ENSMUSG00000084350.2	ENSMUST00000122051.2	2413	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	36.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	145551806	145556512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145551837_145552678_145552806_145554256
ES_00039123	chr4	+	846	5	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-4731	-691	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.3495801958527	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAACATAAAGTCATGG	5432	False	NA	NA	False	AAGAAA	-39	NA	145590632	145625841	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145590812_145593464_145593558_145618982_145619087_145623213_145623341_145625498
ES_00039124	chr4	+	1428	4	FSM	ENSMUSG00000078500.4	ENSMUST00000123460.2	1427	4	-3	2	-3	-2	multi-exon	FALSE	canonical	3	50	junction_1	71.565044229397	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	145595360	145626543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145595513_145618982_145619087_145623213_145623341_145625498
ES_00039130	chr4	+	2049	3	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	1	-657	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_2	78.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCTCTTCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	146033868	146057890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146034017_146054375_146054480_146056093
ES_00039132	chr4	+	2798	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146033914	146063191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
ES_00039134	chr4	+	594	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4245	-2295	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	76.4852927038918	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTTCAATTCTCGAACCA	NA	False	NA	NA	False	NA	NA	NA	146038159	146060896	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146038353_146054375_146054480_146058453_146058581_146060726
ES_00039136	chr4	+	4258	5	FSM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	31	junction_2	207.21064161862	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146093379	146135319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535
ES_00039143	chr4	+	746	6	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	167.233489469065	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206900	146253393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146250678_146250737_146251579_146251707_146253158
ES_00039145	chr4	+	751	7	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	38389	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_5	153.60302369709	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146253393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158
ES_00039147	chr4	+	692	7	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	0	-4077	multi-exon	FALSE	canonical	0	0	junction_2	282.674577326414	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209518_146502821_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00039148	chr4	+	623	6	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	282	3	NA	NA	0	-4077	multi-exon	FALSE	canonical	0	0	junction_2	320.268262555002	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209518_146502821_146502850_146547961_146548020_146548860_146548988_146550437
ES_00039149	chr4	+	669	7	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	0	-4077	multi-exon	FALSE	canonical	0	0	junction_2	281.462648005419	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209518_146502821_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039150	chr4	+	755	7	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	0	-4077	multi-exon	FALSE	canonical	3	35	junction_5	249.56456523758	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209546_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039151	chr4	+	778	7	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	0	-4077	multi-exon	FALSE	canonical	3	35	junction_5	255.348563514442	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209546_146508052_146508139_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00039152	chr4	+	603	5	Intergenic	novelGene_3009	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	30.2603288151335	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGTAAACAGTTTAAC	NA	False	NA	NA	False	AATACA	-3	NA	146223578	146253394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146223715_146240246_146240293_146250678_146250737_146251579_146251707_146253158
ES_00039155	chr4	+	2104	4	Intergenic	novelGene_3010	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	86	junction_2	238.174072663019	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGGTTGTTTTCAATT	2280	False	NA	NA	False	NA	NA	NA	146289338	146319732	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146312913_146312972_146317966
ES_00039156	chr4	+	2151	4	Intergenic	novelGene_3011	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	45	junction_2	250.152397994147	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGGTTGTTTTCAATT	2280	False	NA	NA	False	NA	NA	NA	146289338	146319732	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146312866_146312972_146317966
ES_00039157	chr4	+	1199	3	Intergenic	novelGene_3012	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	310.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAATCTGTTCTTTGCG	2280	False	NA	NA	False	NA	NA	NA	146289338	146434245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146433326
ES_00039158	chr4	+	827	6	Intergenic	novelGene_3013	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	103	junction_2	197.757022631309	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGGTCTTCTATCATTA	2280	False	NA	25	True	TATAAA	-18	NA	146289338	146802309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146435241_146435318_146797295_146797381_146800390_146800518_146802050
ES_00039161	chr4	+	613	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-168368	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	301.546430919021	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146365111	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146365259_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039162	chr4	+	771	6	Intergenic	novelGene_3022	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	160.373813323747	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGGTCTTCTATCATTA	NA	False	NA	25	True	TATAAA	-18	NA	146365125	146802309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146365259_146428065_146428160_146435241_146435318_146797298_146797381_146800390_146800518_146802050
ES_00039164	chr4	+	4253	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159925	182159	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	183.028522367417	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	146426558	146806011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146426715_146428065_146428160_146616526_146616611_146800390_146800518_146802050_146803281_146803449
ES_00039165	chr4	+	4255	6	Intergenic	novelGene_3026	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_5	176.66238988534	152	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTGTTTTCAGTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	146426558	146806012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146426715_146428065_146428160_146797295_146797381_146800390_146800518_146802050_146803281_146803449
ES_00039166	chr4	+	2585	4	Intergenic	novelGene_3027	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	41.5772373621272	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGTTACATGTGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	146426583	146799582	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146426715_146428065_146428160_146435241_146435318_146797298
ES_00039167	chr4	+	706	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-44024	-4077	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	293.10953583942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146489455	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146489654_146508096_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039168	chr4	+	983	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40572	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	296.255970403973	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146492907	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146493332_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039169	chr4	+	891	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40573	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	313.418550025361	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146492906	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146493332_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039170	chr4	+	923	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33300	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	278.693810480247	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500179	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039171	chr4	+	1032	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33300	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	258.749557165483	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500179	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00039172	chr4	+	990	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33300	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	286.590020761366	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500179	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500588_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00039173	chr4	+	755	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33303	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500176	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039174	chr4	+	809	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33248	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	255.877846290417	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500231	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00039175	chr4	+	500	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16528	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1966	False	NA	NA	False	AATACA	-2	NA	146516951	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039176	chr4	+	523	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16528	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1966	False	NA	NA	False	AATACA	-2	NA	146516951	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00039177	chr4	+	593	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16528	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	304.163114134505	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1966	False	NA	NA	False	AATACA	-2	NA	146516951	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146516986_146518646_146518740_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039179	chr4	+	4550	4	FSM	ENSMUSG00000070605.5	ENSMUST00000105733.3	4550	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	316.872564641091	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCCAGTGCCTGTCAGCT	NA	False	NA	NA	False	NA	NA	NA	146533479	146554749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146533533_146547961_146548020_146548860_146548988_146550437
ES_00039181	chr4	+	260	1	FSM	ENSMUSG00000081998.2	ENSMUST00000119646.2	260	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTAGGGGAATGTCAG	NA	False	NA	NA	False	NA	NA	NA	146565123	146565383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146565100_146565400
ES_00039182	chr4	+	3038	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
ES_00039183	chr4	+	3094	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_2	155.965541065968	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146586602_146599350_146599500_146616526_146616611_146619877_146620005_146621233
ES_00039185	chr4	+	2953	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146623852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
ES_00039186	chr4	+	681	5	Fusion	ENSMUSG00000056300.15_ENSMUSG00000063245.12	novel	578	4	NA	NA	6	59692	multi-exon	FALSE	canonical	0	0	junction_1	192.170497215363	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGGTCTTCTATCATTA	NA	False	NA	25	True	TATAAA	-18	NA	146599382	146802309	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146599500_146697966_146698060_146797295_146797381_146800390_146800518_146802050
ES_00039188	chr4	+	656	7	Fusion	ENSMUSG00000096366.2_ENSMUSG00000063245.12	novel	387	3	NA	NA	46	-4	multi-exon	TRUE	canonical	0	0	junction_5	25.9983973865057	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACAATGACTCTGTAA	NA	False	NA	NA	False	AAAAAG	-31	NA	146688714	146742060	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146688741_146697966_146698060_146703611_146703692_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ES_00039189	chr4	+	1275	6	FSM	ENSMUSG00000063245.12	ENSMUST00000130825.8	1275	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	145.190357806571	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGAGGATTCATACAGGA	NA	False	NA	NA	False	NA	NA	NA	146695417	146742617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146695586_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ES_00039190	chr4	+	779	7	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	127.839417499716	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATGACTCTGTAAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	146695443	146742064	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695586_146697966_146698060_146703608_146703692_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ES_00039191	chr4	+	864	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	100.036793231291	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATGACTCTGTAAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	146695446	146742064	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695757_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ES_00039192	chr4	+	944	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	53.8256444457472	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAATGACTCTGTAAACA	NA	False	NA	NA	False	AAAAAG	-34	NA	146695446	146742063	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695801_146697966_146698060_146703608_146703692_146739355_146739414_146740256_146740384_146741834
ES_00039193	chr4	+	700	5	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	29	59692	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	179.513230710162	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGGTCTTCTATCATTA	NA	False	NA	25	True	TATAAA	-18	NA	146695446	146802309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695586_146697966_146698060_146797298_146797381_146800390_146800518_146802050
ES_00039194	chr4	+	578	5	NNC	ENSMUSG00000063245.12	novel	387	3	NA	NA	16838	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	40.8748088680547	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAAAGAAGTTTGCAAATA	NA	False	NA	NA	False	AAAAAG	-17	NA	146712255	146742046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146712391_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ES_00039200	chr4	+	2295	5	FSM	ENSMUSG00000086147.3	ENSMUST00000146688.3	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	133.103343308874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTATGTGACAAATACAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147075212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383
ES_00039201	chr4	+	712	5	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	1	-3267	multi-exon	FALSE	canonical	3	32	junction_2	222.414449845328	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATCATTAGTCTCAATCA	NA	False	NA	NA	False	TATAAA	-28	NA	147056433	147141984	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147056575_147058404_147058498_147136965_147137048_147140055_147140183_147141715
ES_00039203	chr4	+	1148	3	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	4	38803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	168.5	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTTTGCGAGACTGTA	NA	False	NA	NA	False	NA	NA	NA	147056436	147114015	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147056575_147058404_147058498_147113098
ES_00039205	chr4	+	4010	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	-17	0	-17	0	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2266	False	NA	NA	False	AATAAA	-19	NA	147106289	147145251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
ES_00039209	chr4	+	6816	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1808	4194	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	34.022051672408	114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTCTCAGGAGGCAAG	2774	False	NA	NA	False	NA	NA	NA	147233142	147269230	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ES_00039210	chr4	+	2114	4	FSM	ENSMUSG00000087207.9	ENSMUST00000125785.8	585	4	0	-1529	0	819	multi-exon	FALSE	canonical	3	35	junction_2	228.391476782008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTTGGTTGTTTTCAAT	4110	False	NA	NA	False	NA	NA	NA	147314740	147344614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147314893_147316807_147316901_147337753_147337859_147342850
ES_00039212	chr4	+	696	5	Fusion	ENSMUSG00000078497.10_ENSMUSG00000087207.9	novel	585	4	NA	NA	9	158	multi-exon	FALSE	canonical	3	16	junction_2	235.308706808737	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTGTTTAAAGGGGTC	4119	False	NA	-8	True	TATAAA	-7	NA	147314749	147474904	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147314893_147316807_147316901_147469673_147469759_147472778_147472906_147474656
ES_00039216	chr4	+	1438	3	NNC	ENSMUSG00000087207.9	novel	585	4	NA	NA	9	-20645	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_2	234	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTAGCCACTTTTCTG	4119	False	NA	NA	False	NA	NA	NA	147314749	147322440	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147314893_147316807_147316901_147321238
ES_00039217	chr4	+	637	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	9	-1033	multi-exon	FALSE	canonical	3	35	junction_2	213.636373307543	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTCAATTCTCGAACC	4119	False	NA	NA	False	NA	NA	NA	147314749	147415893	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147314893_147316807_147316901_147337753_147337859_147413438_147413566_147415724
ES_00039224	chr4	+	2800	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390130	147418191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
ES_00039225	chr4	+	3522	5	FSM	ENSMUSG00000078497.10	ENSMUST00000133078.8	572	5	-77	-2873	-77	2158	multi-exon	FALSE	canonical	3	66	junction_1	194.465292533141	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	2292	False	NA	NA	False	AATAAA	-22	NA	147445682	147477619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147445939_147447267_147447362_147469676_147469759_147472778_147472906_147474656
ES_00039226	chr4	+	1258	5	FSM	ENSMUSG00000078497.10	ENSMUST00000154154.2	1250	5	-8	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	206.815739246316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCTTACAAAT	2369	False	NA	NA	False	NA	NA	NA	147445759	147475461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656
ES_00039228	chr4	+	1502	4	FSM	ENSMUSG00000078496.10	ENSMUST00000105721.9	1488	4	-14	0	-14	0	multi-exon	FALSE	canonical	2	2	junction_1	138.089343059726	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAAACCTTACAAATGT	NA	False	NA	NA	False	NA	NA	NA	147576859	147597943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147577038_147592042_147592098_147595209_147595337_147596801
ES_00039233	chr4	+	540	4	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	68	multi-exon	FALSE	canonical	3	57	junction_1	18.8325958557674	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAACCAAAAAAGACTTAA	NA	False	NA	NA	False	AATATA	-36	NA	147576876	147667466	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147577009_147661481_147661587_147665698_147665826_147667290
ES_00039234	chr4	+	682	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	-54	0	-54	0	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAACACAAGCGAAA	NA	False	NA	NA	False	NA	NA	NA	147637679	147667583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
ES_00039236	chr4	+	2762	6	FSM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	34.5913283931103	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637795	147669655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147637884_147646898_147646979_147647371_147647416_147661528_147661587_147665698_147665826_147667290
ES_00039241	chr4	+	6372	12	NIC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-98	0	intron_retention	FALSE	canonical	3	54	junction_1	21.8151513046846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGTTTTTAAATGCTTA	NA	False	NA	17	True	ATTAAA	-21	NA	148123435	148144008	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ES_00039242	chr4	+	2665	12	FSM	ENSMUSG00000029009.18	ENSMUST00000097788.11	2652	12	-13	0	-13	0	multi-exon	FALSE	canonical	3	10	junction_1	31.6729151439997	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGGAGGCTTGCTCTTG	NA	False	NA	18	True	AAGAAA	-32	NA	148123520	148140663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148123590_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ES_00039243	chr4	+	6944	11	NNC	ENSMUSG00000029009.18	novel	2104	6	NA	NA	26	1	intron_retention	FALSE	canonical	3	24	junction_1	28.0551243091169	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTTTTAAATGCTTAG	NA	False	NA	18	True	ATTAAA	-22	NA	148123641	148144009	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_148123867_148126043_148126287_148127881_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ES_00039244	chr4	+	6242	13	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-20	0	intron_retention	TRUE	canonical	3	54	junction_1	21.7464875835667	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGTTTTTAAATGCTTA	NA	False	NA	17	True	ATTAAA	-21	NA	148123513	148144008	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140089_148140140
ES_00039245	chr4	+	6061	12	NNC	ENSMUSG00000029009.18	novel	847	4	NA	NA	124	14	intron_retention	FALSE	canonical	3	11	junction_5	33.6221100020765	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGCGTAATTTATTTT	NA	False	NA	31	True	ATTAAA	-35	NA	148123739	148144022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135849_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ES_00039250	chr4	+	1017	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	-14	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533067	148539430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
ES_00039259	chr4	+	744	5	FSM	ENSMUSG00000028979.18	ENSMUST00000105701.9	738	5	-6	0	-6	0	multi-exon	FALSE	canonical	2	14	junction_1	7.49583217528247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGCTGTGTGTCTCT	NA	False	NA	5	True	AATAAA	-15	NA	148687004	148688874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148688712
ES_00039263	chr4	+	2458	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	-1	0	-1	0	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188601	149205104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
ES_00039267	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ES_00039268	chr4	+	1509	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	65.4017412237781	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569789	149581125	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_149570050_149570318_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ES_00039269	chr4	+	1513	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	58.2405287035881	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569789	149581125	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ES_00039273	chr4	+	4387	17	NIC	ENSMUSG00000039953.14	novel	4459	18	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	3	47	junction_9	127.641037190239	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	24	True	AATAAA	-19	NA	149670939	149733356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
ES_00039275	chr4	+	4432	19	NNC	ENSMUSG00000039953.14	novel	4459	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	364	junction_18	62.7946879879674	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	24	True	AATAAA	-19	NA	149670924	149733356	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829_149733144_149733170
ES_00039282	chr4	+	2029	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	-2	0	-2	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCATCTCATTTGTG	NA	False	NA	5	True	AATAAA	-22	NA	150321406	150333336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ES_00039291	chr4	+	7728	23	FSM	ENSMUSG00000039852.18	ENSMUST00000105682.9	7728	23	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	25.3224249749421	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGGCCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	150366102	150706423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_150366533_150490652_150491122_150515979_150516051_150523799_150523926_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ES_00039292	chr4	+	6125	13	NIC	ENSMUSG00000039852.18	novel	496	5	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	28.7347785792757	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGGCCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	150653969	150706423	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_150654144_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ES_00039297	chr4	+	2224	16	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_15	220.298544908696	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTGAGAACAATGGGTTT	9070	False	NA	18	True	TATAAA	-10	NA	152018147	152065669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064503_152065159
ES_00039299	chr4	+	786	6	FSM	ENSMUSG00000039768.17	ENSMUST00000148048.2	786	6	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	36.8477950493649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTACTTGGCAGTGCACA	NA	False	NA	NA	False	NA	NA	NA	152054202	152061502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406
ES_00039300	chr4	+	2753	4	FSM	ENSMUSG00000039768.17	ENSMUST00000149337.2	653	4	-1609	-491	-1609	0	multi-exon	FALSE	canonical	3	880	junction_1	46.6976087896015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGGAAACTAGTCTCTT	3759	False	NA	33	True	TATAAA	-25	NA	152061831	152065684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152063787_152063900_152064044_152064374_152064505_152065159
ES_00039303	chr4	+	3889	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	45.4175076374739	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGTGTCATGGCCTTC	6471	False	NA	13	True	AATAAA	-13	NA	152093332	152102137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101489_152101512
ES_00039304	chr4	+	3859	6	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	51.3435487671041	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGTGTCATGGCCTTC	6471	False	NA	13	True	AATAAA	-13	NA	152093332	152102137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101398_152101427_152101489_152101512
ES_00039306	chr4	+	3736	12	FSM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	-14	0	-8	0	multi-exon	FALSE	canonical	3	617	junction_5	39.8725241465621	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATAATAACAAAGA	7331	False	NA	NA	False	NA	NA	NA	152123769	152144481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
ES_00039307	chr4	+	5061	11	FSM	ENSMUSG00000028948.17	ENSMUST00000131696.3	3616	11	0	-1445	0	-7	multi-exon	FALSE	canonical	3	23	junction_4	202.328841246126	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGTGCGGTTCCTAGC	7381	False	NA	NA	False	AATAAA	-10	NA	152123819	152145944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
ES_00039309	chr4	+	3836	22	FSM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	-18	0	-18	0	multi-exon	FALSE	canonical	3	104	junction_1	15.0256017344728	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAAAGAGTCATGCGCT	NA	False	NA	28	True	TATAAA	-17	NA	152171296	152199847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
ES_00039310	chr4	+	4054	21	ISM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	17	8	17	-8	intron_retention	FALSE	canonical	3	104	junction_1	15.0860863049367	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTTCCGTGGAAAGAGT	NA	False	NA	20	True	TATAAA	-9	NA	152171331	152199839	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254
ES_00039312	chr4	+	2792	7	FSM	ENSMUSG00000039713.18	ENSMUST00000140085.2	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	4.83045891539648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAGTCATGCGCTTCTG	1575	False	NA	32	True	TATAAA	-21	NA	152192092	152199851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
ES_00039315	chr4	+	1359	9	FSM	ENSMUSG00000028937.15	ENSMUST00000105652.3	1393	9	34	0	-24	0	multi-exon	FALSE	canonical	0	0	junction_1	162.572099389778	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152284300	152356304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152284415_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ES_00039317	chr4	+	4950	6	FSM	ENSMUSG00000039662.17	ENSMUST00000151372.8	4950	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	50.2274825170444	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAGGAGTCCTGTATCA	4612	False	NA	2	True	AATAAA	-17	NA	152381760	152391577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152382026_152383141_152383231_152383593_152383703_152384127_152384298_152384993_152385212_152387478
ES_00039318	chr4	+	2065	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	-14	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	2714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCACTGTGCAAGGCTTT	NA	False	NA	29	True	ATTAAA	-19	NA	152410309	152418528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ES_00039323	chr4	+	990	4	FSM	ENSMUSG00000047613.11	ENSMUST00000147826.2	940	4	-50	0	-21	0	multi-exon	FALSE	canonical	3	119	junction_1	332.870345129551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATGAATTCTGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	154041672	154046260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
ES_00039324	chr4	+	998	3	FSM	ENSMUSG00000047613.11	ENSMUST00000105645.9	977	3	-21	0	-21	0	multi-exon	FALSE	canonical	3	25	junction_1	388	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATACTGTGTTCACA	NA	False	NA	NA	False	AATAAA	-22	NA	154041672	154046375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_154041780_154044987_154045450_154045946
ES_00039327	chr4	+	4925	22	NNC	ENSMUSG00000039523.17	novel	5151	22	NA	NA	50	-170	intron_retention	FALSE	canonical	2	9	junction_14	19.8388061962538	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAATACAGATGTAAATAC	NA	False	NA	NA	False	CATAAA	-42	NA	154059700	154093019	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078134_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
ES_00039328	chr4	+	388	2	FSM	ENSMUSG00000039523.17	ENSMUST00000155414.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTTTGTTGTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	154073662	154074533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_154073749_154074231
ES_00039330	chr4	+	3337	9	NNC	ENSMUSG00000029028.15	novel	3395	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	132	junction_8	98.6432967818898	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTGCATCAGCAGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	154096259	154105969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104364_154104392_154104673_154104701
ES_00039336	chr4	+	1431	10	FSM	ENSMUSG00000029056.14	ENSMUST00000105632.8	1431	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	27.5228300296228	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGAGAAGCAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	155058989	155065395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
ES_00039341	chr4	+	844	4	FSM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	-69	-65	23	0	multi-exon	FALSE	canonical	2	17	junction_1	91.7617688485909	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCAGAGATTACCTGGGA	NA	False	NA	NA	False	NA	NA	NA	155334376	155340905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155334520_155335001_155335108_155335212_155335494_155340591
ES_00039342	chr4	+	1562	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	-83	0	23	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334376	155341141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155335108_155335212_155335494_155340591
ES_00039343	chr4	+	1074	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	0	2	0	1	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTTTCCTTCATAGC	NA	False	NA	6	True	NA	NA	NA	155334422	155341142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
ES_00039347	chr4	+	3164	11	FSM	ENSMUSG00000029064.16	ENSMUST00000105616.10	3088	11	-78	2	-75	0	multi-exon	FALSE	canonical	3	1867	junction_1	609.593339858631	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTGGTGTGATGGTTAT	NA	False	NA	25	True	AATAAA	-17	NA	155575742	155643724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ES_00039348	chr4	+	3205	12	NNC	ENSMUSG00000029064.16	novel	3131	12	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1228.84610257007	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTGGTGTGATGGTTAT	NA	False	NA	25	True	AATAAA	-17	NA	155575749	155643724	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637975_155639470_155639689_155641627_155641744_155641927
ES_00039349	chr4	+	3140	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	-9	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_1	785.626496329864	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575817	155643726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ES_00039350	chr4	+	3143	12	FSM	ENSMUSG00000029064.16	ENSMUST00000165335.8	3143	12	0	0	0	0	multi-exon	FALSE	canonical	3	731	junction_11	1088.68406424249	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575817	155643726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641924
ES_00039351	chr4	+	3176	11	NIC	ENSMUSG00000029064.16	novel	3143	12	NA	NA	-84	0	combination_of_known_junctions	FALSE	canonical	3	731	junction_10	1033.79389145032	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTGGTGTGATGGTTAT	NA	False	NA	25	True	AATAAA	-17	NA	155575733	155643724	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641924
ES_00039359	chr4	+	797	7	FSM	ENSMUSG00000029062.15	ENSMUST00000135550.8	805	7	0	8	0	-8	multi-exon	FALSE	canonical	3	40	junction_1	181.212045834585	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGACCTGCTCCTTAGCG	3947	False	NA	NA	False	NA	NA	NA	155709310	155714789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155709399_155709641_155709797_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650
ES_00039360	chr4	+	2610	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-15	0	0	0	multi-exon	FALSE	canonical	3	247	junction_2	74.7943440763884	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3947	False	NA	23	True	ATTAAA	-28	NA	155709310	155734395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ES_00039362	chr4	+	2715	21	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	-58	0	combination_of_known_junctions	TRUE	canonical	3	57	junction_2	115.97994438695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3889	False	NA	23	True	ATTAAA	-28	NA	155709252	155734395	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_155709399_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ES_00039363	chr4	+	3173	19	FSM	ENSMUSG00000029062.15	ENSMUST00000105600.8	3170	19	-3	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	73.1081770772296	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3973	False	NA	23	True	ATTAAA	-28	NA	155709336	155734395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ES_00039364	chr4	+	2673	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ES_00039367	chr4	+	2715	2	FSM	ENSMUSG00000029038.10	ENSMUST00000140322.2	1555	2	-323	-837	1	837	multi-exon	FALSE	canonical	3	1675	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCACGGCTAACCTGGGG	NA	False	NA	NA	False	NA	NA	NA	155789257	155801972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155789919_155799918
ES_00039369	chr4	+	1155	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	-281	0	54	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789310	155816646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
ES_00039370	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887977	155893288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
ES_00039372	chr4	+	1723	4	FSM	ENSMUSG00000029068.17	ENSMUST00000136370.2	833	4	-725	-165	-436	165	multi-exon	FALSE	canonical	3	885	junction_3	91.4123745573991	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAACAACAACAACAAAAAAA	4189	False	NA	NA	False	NA	NA	NA	155896509	155900480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699
ES_00039374	chr4	+	2442	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4625	False	NA	NA	False	ATTAAA	-15	NA	155896945	155909000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ES_00039375	chr4	+	4232	11	FSM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	-12	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	224.905068862398	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4625	False	NA	NA	False	ATTAAA	-15	NA	155896945	155909000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ES_00039376	chr4	+	3411	8	FSM	ENSMUSG00000029068.17	ENSMUST00000129850.8	3411	8	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	256.098434519357	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGGAAGGCCCAAAGA	4655	False	NA	NA	False	NA	NA	NA	155896975	155906329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155904886_155905240_155905346_155905429_155905572_155906268
ES_00039377	chr4	+	3965	11	NNC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_8	297.048497723857	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGAAATTTTACGTGGT	4655	False	NA	-32	True	NA	NA	NA	155896975	155908760	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905570_155906263_155906378_155906461_155906555_155907799
ES_00039378	chr4	+	1089	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	-316	0	2	0	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	False	NA	-3	True	NA	NA	NA	155915809	155917488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
ES_00039381	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	3	2371	junction_1	52	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916115	155917518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155916528_155916808_155917255_155917347
ES_00039386	chr4	+	4774	12	FSM	ENSMUSG00000029071.17	ENSMUST00000156997.8	4774	12	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	21.1722569134686	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATGTGTGGCTTGTTTC	NA	False	NA	19	True	AAAAAG	-17	NA	155931922	155943759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155932362_155937874_155937945_155938093_155938544_155938786_155938926_155939022_155939117_155939187_155939483_155939560_155939638_155939728_155939797_155939923_155940077_155940588_155940721_155940818_155940987_155941070
ES_00039392	chr4	+	3324	7	FSM	ENSMUSG00000023286.17	ENSMUST00000166489.8	3339	7	0	15	0	-15	multi-exon	FALSE	canonical	3	339	junction_1	277.674519696873	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTGGCTCAAGCATGC	757	False	NA	NA	False	AATAAA	-14	NA	156028287	156044046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156028608_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ES_00039393	chr4	+	1325	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	-16	0	-16	0	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	741	False	NA	34	True	TATAAA	-16	NA	156028271	156042168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ES_00039394	chr4	+	3487	8	FSM	ENSMUSG00000023286.17	ENSMUST00000024056.10	3483	8	-19	15	0	-15	multi-exon	FALSE	canonical	3	207	junction_1	340.827324764495	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTGGCTCAAGCATGC	757	False	NA	NA	False	AATAAA	-14	NA	156028287	156044046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156028608_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ES_00039395	chr4	+	1453	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	-19	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	776	False	NA	34	True	TATAAA	-16	NA	156028306	156042168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ES_00039398	chr4	+	1670	8	FSM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	241.738769445576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077328	156094667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156077464_156077609_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ES_00039399	chr4	+	5177	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTGCACGTGTGTG	NA	False	NA	6	True	NA	NA	NA	156077367	156098067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ES_00039400	chr4	+	1663	7	FSM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	-9	0	-9	0	multi-exon	FALSE	canonical	3	13	junction_1	268.571995313485	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCTTGGGATGGTTG	NA	False	NA	136	True	NA	NA	NA	156077824	156094775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156078027_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ES_00039404	chr4	+	2677	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	-17	0	-1	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8254	False	NA	20	True	NA	NA	NA	156194437	156211720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ES_00039405	chr4	+	2945	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	-14	6	-11	-4	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8244	False	NA	16	True	NA	NA	NA	156194427	156211716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
ES_00039408	chr4	+	3646	5	ISM	ENSMUSG00000059939.14	ENSMUST00000105576.2	1329	9	10811	-1044	6914	0	3prime_fragment	FALSE	canonical	3	97	junction_3	44.7800178651148	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	1965	False	NA	20	True	NA	NA	NA	156205266	156211720	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ES_00039414	chr4	+	1240	3	FSM	ENSMUSG00000095567.9	ENSMUST00000238213.2	1240	3	0	0	0	0	multi-exon	FALSE	canonical	3	1832	junction_2	118	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTACTCATCATCTGAC	NA	False	NA	NA	False	NA	NA	NA	156326177	156328598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_156326258_156327022_156328081_156328496
ES_00039416	chr4	-	2692	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	0	-2	0	2	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAACTATTTTTGGAG	280	False	NA	NA	False	AATAAA	-16	NA	3574853	3549038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
ES_00039417	chr4	-	375	4	FSM	ENSMUSG00000028232.14	ENSMUST00000150676.8	377	4	0	2	0	-2	multi-exon	FALSE	canonical	3	7	junction_1	30.24345659257	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCAGGGTACTGCTGTT	-6	True	NA	NA	False	NA	NA	NA	3574804	3569363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3569464_3569630_3569753_3570320_3570373_3574703
ES_00039418	chr4	-	3644	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	0	62	0	-62	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	2961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTGGCCCTCTGCACAC	NA	False	NA	NA	False	NA	NA	NA	3835665	3831395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
ES_00039419	chr4	-	512	2	FSM	ENSMUSG00000028234.7	ENSMUST00000130128.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	3	8316	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	365	False	NA	-37	True	AATAAA	-18	NA	3835233	3834469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3834684_3834935
ES_00039420	chr4	-	1140	1	FSM	ENSMUSG00000078365.6	ENSMUST00000105158.2	1449	1	306	3	306	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCTGAAGTGCTTTTCC	3437	False	NA	NA	False	AATAAA	-14	NA	3871799	3870659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3870700_3871800
ES_00039421	chr4	-	508	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	-5	1	-5	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1571	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTATCCAAGGCTACAT	1	True	NA	NA	False	AATAAA	-40	NA	3973600	3973092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3973100_3973600
ES_00039422	chr4	-	1309	3	NNC	ENSMUSG00000045573.10	novel	721	3	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATTGTAAGAACTGG	178	False	NA	-11	True	AATAAA	-20	NA	4138829	4133534	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_4134508_4138005_4138147_4138634
ES_00039423	chr4	-	6544	5	FSM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	0	-1	0	1	multi-exon	FALSE	canonical	3	157	junction_3	6.90561365846657	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGCTGTGTTGGTGTTTC	-27	True	NA	-3	True	AATAAA	-23	NA	4793355	4762482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_4767973_4769311_4769474_4776313_4776410_4778192_4778356_4792722
ES_00039424	chr4	-	3509	31	FSM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	0	-2	0	2	multi-exon	FALSE	canonical	3	82	junction_12	11.571804814577	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTTATCTTATTTAAATA	25	True	NA	NA	False	ATTAAA	-23	NA	6454271	6396204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089_6409158_6409843_6409912_6413567_6413627_6414963_6415073_6416499_6416664_6417164_6417208_6417745_6417878_6418260_6418382_6418471_6418524_6419863_6419928_6420049_6420141_6421056_6421137_6423321_6423499_6424878_6424988_6426401_6426474_6428391_6428522_6432679_6432733_6432829_6432878_6433262_6433335_6435056_6435108_6437741_6437779_6437853_6437922_6438042_6438122_6440899_6440990_6453984
ES_00039425	chr4	-	3875	9	FSM	ENSMUSG00000041261.10	ENSMUST00000066674.8	3853	9	0	-22	0	22	multi-exon	FALSE	canonical	3	29	junction_2	2.31503239718152	783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAAAGAAAATTCAAAGC	-1	True	NA	NA	False	AATAAA	-45	NA	8239041	8143339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_8146217_8169595_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
ES_00039426	chr4	-	6694	24	FSM	ENSMUSG00000028207.19	ENSMUST00000078139.13	6694	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	108.084473020543	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	9669162	9449078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ES_00039427	chr4	-	6646	23	FSM	ENSMUSG00000028207.19	ENSMUST00000108340.9	6646	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	115.972932507461	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	9669162	9449078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ES_00039429	chr4	-	2222	4	FSM	ENSMUSG00000028207.19	ENSMUST00000124408.2	2496	4	274	0	274	0	multi-exon	FALSE	canonical	3	195	junction_1	116.178980695974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCACACTCTGTTTTTA	6647	False	NA	NA	False	NA	NA	NA	9595415	9574871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376
ES_00039430	chr4	-	2836	13	FSM	ENSMUSG00000028207.19	ENSMUST00000108337.8	2836	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	142.503411265212	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ES_00039431	chr4	-	2884	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	124.875606744325	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ES_00039432	chr4	-	2908	15	NNC	ENSMUSG00000028207.19	novel	2884	14	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	164.974286802891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTAGATTGTCATTAT	-1	False	NA	-7	True	AATAAA	-14	NA	9669115	9575269	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_9576974_9580219_9580294_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ES_00039433	chr4	-	3112	4	FSM	ENSMUSG00000028207.19	ENSMUST00000098275.9	1007	4	-236	-1869	-54	345	multi-exon	FALSE	canonical	0	0	junction_1	212.653604614536	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAAGTTATTGGCAAA	NA	False	NA	NA	False	NA	NA	NA	9669398	9628677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_9630953_9635900_9635970_9639197_9639348_9668780
ES_00039434	chr4	-	929	1	FSM	ENSMUSG00000084215.4	ENSMUST00000119515.2	929	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTCCCCGTGTCCTCGC	NA	False	NA	NA	False	NA	NA	NA	10439743	10438814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_10438800_10439700
ES_00039435	chr4	-	2977	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	0	495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	NA	False	NA	-1	True	AATAAA	-17	NA	11007676	10988661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_10991355_11007392
ES_00039436	chr4	-	1088	9	FSM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	55	-61	0	61	multi-exon	FALSE	canonical	0	0	junction_7	119.468549731718	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	36	False	NA	58	True	ATTAAA	-21	NA	11076149	11050983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
ES_00039437	chr4	-	1013	8	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	137.492263233171	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	-3	True	NA	-3	True	TTTAAA	-3	NA	11076188	11051044	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073139_11073244_11075979
ES_00039440	chr4	-	2785	2	Intergenic	novelGene_2701	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGGTCTTTCATGTTTCC	8690	False	NA	1	True	NA	NA	NA	11182533	11175962	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_11178675_11182460
ES_00039441	chr4	-	3220	27	FSM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_22	31.9212464720813	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	-1	True	NA	-14	True	ATTAAA	-20	NA	11254258	11204382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
ES_00039442	chr4	-	6765	19	FSM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	0	-11	0	11	multi-exon	FALSE	canonical	3	48	junction_13	8.17176711475418	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATCTTTCTTGTTGTAT	-10	True	NA	2	True	AATAAA	-35	NA	11322137	11261303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
ES_00039443	chr4	-	4183	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	0	18	0	-18	multi-exon	FALSE	canonical	3	21	junction_1	0	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGGCTTTACATCTATA	-38	True	NA	-25	True	AATAAA	-3	NA	11966452	11958201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11962234_11966301
ES_00039444	chr4	-	2588	3	FSM	ENSMUSG00000049225.15	ENSMUST00000108299.2	2588	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTGCTATGTTTAATTC	-13	True	NA	NA	False	AATAAA	-20	NA	11966427	11959806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11962234_11965613_11965649_11966301
ES_00039445	chr4	-	3456	28	FSM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_10	5.81280927905584	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGCGTTATTGAT	4	True	NA	NA	False	AATAAA	-32	NA	12087957	12039354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
ES_00039446	chr4	-	1146	8	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	22	52905	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	130.899556445204	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGGATTACACAGTCTT	-17	True	NA	NA	False	ATTAAA	-33	NA	12171849	12100503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ES_00039447	chr4	-	425	1	FSM	ENSMUSG00000082676.2	ENSMUST00000118984.2	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGTGGATCTCAAACTT	4499	False	NA	NA	False	AAGAAA	-45	NA	12131975	12131550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_12131600_12132000
ES_00039448	chr4	-	1292	8	FSM	ENSMUSG00000028218.20	ENSMUST00000087052.11	1292	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	133.555614037061	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	2	True	NA	-42	True	ATTAAA	-39	NA	12171995	12153723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
ES_00039449	chr4	-	1285	8	NIC	ENSMUSG00000028218.20	novel	1639	9	NA	NA	11	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	135.606423302203	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTACATAGTCTTTCTT	13	True	NA	-44	True	ATTAAA	-37	NA	12171984	12153725	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ES_00039451	chr4	-	438	1	FSM	ENSMUSG00000083328.4	ENSMUST00000118781.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	40	False	NA	NA	False	AATACA	-33	NA	13483192	13482754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_13482800_13483200
ES_00039453	chr4	-	470	4	FSM	ENSMUSG00000023151.10	ENSMUST00000143565.2	625	4	1	154	1	-154	multi-exon	FALSE	canonical	0	0	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATAGTCCTTCAGAAC	NA	False	NA	NA	False	NA	NA	NA	14756844	14665907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_14666024_14703885_14704066_14708589_14708692_14756772
ES_00039454	chr4	-	3268	7	FSM	ENSMUSG00000040550.18	ENSMUST00000117268.9	3266	7	1	-3	1	3	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAATTGTCATTTGTTTA	-1	True	NA	12	True	AATAAA	-31	NA	14826586	14809494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ES_00039455	chr4	-	3148	7	NNC	ENSMUSG00000040550.18	novel	3266	7	NA	NA	-75	3	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_5	96.2042098870938	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAATTGTCATTTGTTTA	131	False	NA	12	True	AATAAA	-31	NA	14826470	14809494	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822769_14825498_14825654_14826290
ES_00039456	chr4	-	4922	13	FSM	ENSMUSG00000040536.16	ENSMUST00000041606.14	4922	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.35249294896631	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATTTGTATTTATTCT	633	False	NA	NA	False	AATAAA	-24	NA	15149131	14952244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_14955922_14957825_14957918_14960007_14960086_14965905_14966019_14975132_14975187_14978154_14978232_14989157_14989280_15004968_15005106_15052619_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
ES_00039457	chr4	-	3009	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	105	-155	105	155	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCATGTGGGTGAACT	NA	False	NA	NA	False	NA	NA	NA	15945402	15917084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
ES_00039458	chr4	-	2710	6	FSM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	-3	-49	-3	49	multi-exon	FALSE	canonical	3	76	junction_2	19.0305018325844	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTTCATTCATAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	16013891	15997071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013686
ES_00039459	chr4	-	2536	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATTGTGCCCTTTCCCAT	-4	True	NA	NA	False	ATTAAA	-17	NA	16013796	15997121	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
ES_00039461	chr4	-	2008	6	NNC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	0	-686	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	48.0524713204222	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGTGTATTGGCTTGA	0	True	NA	-3	True	ATTAAA	-18	NA	16013888	15997912	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013515
ES_00039463	chr4	-	2694	11	FSM	ENSMUSG00000041135.16	ENSMUST00000037035.12	2692	11	-12	10	-12	-2	multi-exon	TRUE	canonical	3	70	junction_4	17.1373860317144	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTTATCTTCTGGT	NA	False	NA	-10	True	AATAAA	-17	NA	16163659	16122742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16158276_16158431_16163223
ES_00039464	chr4	-	1478	1	FSM	ENSMUSG00000050550.8	ENSMUST00000121594.2	1478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAAGCTGCCATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	18845679	18844201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_18844200_18845700
ES_00039465	chr4	-	5649	16	FSM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	0	-1	0	1	multi-exon	FALSE	canonical	3	122	junction_5	15.541199724889	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATAGCTGTGTTTGGTTTT	-13	True	NA	-5	True	AATAAA	-16	NA	19570108	19519252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
ES_00039466	chr4	-	6440	25	FSM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_17	21.4877225927324	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAACTATTGCTTGAAC	-30	True	NA	NA	False	NA	NA	NA	19708993	19608302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650441_19659562_19659748_19661965_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
ES_00039467	chr4	-	4456	25	NNC	ENSMUSG00000041058.16	novel	6440	25	NA	NA	42	-545	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_17	40.8971440187318	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCGGCTTTCATTCAGT	12	True	NA	NA	False	AATAAA	-16	NA	19708951	19610217	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650414_19659562_19659748_19661965_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
ES_00039468	chr4	-	4154	25	NNC	ENSMUSG00000041058.16	novel	6440	25	NA	NA	42	-871	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_19	42.0749991747541	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTTTCAATATGCACTG	12	True	NA	NA	False	TATAAA	-18	NA	19708951	19610543	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650441_19659562_19659748_19661965_19662030_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
ES_00039471	chr4	-	1585	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	3	0	3	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-14	True	NA	0	True	AATAAA	-24	NA	21767209	21757381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
ES_00039472	chr4	-	3941	21	NNC	ENSMUSG00000040359.15	novel	5189	19	NA	NA	0	158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.5945889639637	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTATAATGTTGTTAGG	16	True	NA	NA	False	ACTAAA	-24	NA	25281760	25248441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_25249224_25249244_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ES_00039473	chr4	-	4692	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	73	-449	0	444	multi-exon	TRUE	canonical	3	153	junction_3	22.816024799564	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATACAACTTCATGGCTG	99	False	NA	NA	False	NA	NA	NA	25281748	25248155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ES_00039475	chr4	-	273	1	FSM	ENSMUSG00000081789.2	ENSMUST00000117829.2	491	1	313	-95	313	95	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGTACTTTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	25541968	25541695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_25541700_25542000
ES_00039476	chr4	-	12141	3	FSM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	0	-7	0	7	multi-exon	FALSE	canonical	3	36	junction_2	8.5	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTCTGTACAATGTTTG	303	False	NA	7	True	AATAAA	-28	NA	25800146	25609324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_25620821_25709027_25709115_25799588
ES_00039477	chr4	-	4875	5	FSM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	0	-8	0	8	multi-exon	TRUE	canonical	3	44	junction_4	9.33742469849155	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTCATTGTTATGATAAG	0	True	NA	4	True	AATAAA	-33	NA	26346891	26324497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346596
ES_00039479	chr4	-	1030	2	Intergenic	novelGene_2727	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCAGAGTCTGTGTTAT	6338	False	NA	NA	False	NA	NA	NA	32160956	32159026	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_32159894_32160793
ES_00039481	chr4	-	5566	7	FSM	ENSMUSG00000054659.14	ENSMUST00000098181.9	1445	7	-292	-3829	12	3829	multi-exon	FALSE	canonical	3	17	junction_1	3.71558280160133	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAAATGTCTGTGTGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	33189725	33170400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_33174481_33174743_33174852_33179204_33179341_33181704_33181860_33183076_33183220_33187047_33187197_33188930
ES_00039482	chr4	-	1315	4	FSM	ENSMUSG00000054659.14	ENSMUST00000119167.2	1339	4	26	-2	26	2	multi-exon	FALSE	canonical	3	23	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGCTGATTTTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	33189711	33181617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_33181860_33183076_33183220_33187047_33187197_33188930
ES_00039483	chr4	-	1648	2	FSM	ENSMUSG00000040128.10	ENSMUST00000049357.10	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	0	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGGCTTTTTGTGTGTG	-1	True	NA	2	True	TTTAAA	-38	NA	33248510	33245422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_33246508_33247947
ES_00039484	chr4	-	211	1	NIC	ENSMUSG00000086127.2	novel	1536	2	NA	NA	5130	-1228	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTTAAAAGAACTTTTG	NA	False	NA	NA	False	NA	NA	NA	33305007	33304796	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_33304800_33305000
ES_00039486	chr4	-	2266	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-5	True	NA	-17	True	CATAAA	-21	NA	34614913	34570795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ES_00039487	chr4	-	2291	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	9	0	9	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	NA	False	NA	-17	True	CATAAA	-21	NA	34614935	34570795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ES_00039488	chr4	-	1750	14	FSM	ENSMUSG00000040044.12	ENSMUST00000132918.8	1750	14	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_5	106.750885145229	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAATAAAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	34598751	34571564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607
ES_00039489	chr4	-	3089	14	FSM	ENSMUSG00000040044.12	ENSMUST00000156987.8	3089	14	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_1	105.679038468362	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAACCAAGTGCCC	-3	True	NA	NA	False	NA	NA	NA	34614911	34577642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ES_00039490	chr4	-	848	5	FSM	ENSMUSG00000040044.12	ENSMUST00000133107.2	848	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	289.805969572747	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGCTTAATGGGTCATC	NA	False	NA	NA	False	NA	NA	NA	34598620	34592072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34592500_34593060_34593175_34595076_34595237_34597307_34597442_34598607
ES_00039495	chr4	-	751	6	FSM	ENSMUSG00000028293.15	ENSMUST00000126033.2	751	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	64.3179601666595	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTATCTGTAAGTATC	4091	False	NA	NA	False	AAAAAG	-32	NA	34683369	34669497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34669664_34671779_34671847_34673808_34673929_34675029_34675183_34675471_34675632_34683284
ES_00039498	chr4	-	1220	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	-14	-424	-14	424	multi-exon	FALSE	canonical	3	19	junction_2	76	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAGTGGCTAAGATCAAT	-27	True	NA	NA	False	NA	NA	NA	34778378	34768239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34769148_34771257_34771415_34778223
ES_00039499	chr4	-	935	4	FSM	ENSMUSG00000028295.15	ENSMUST00000108133.10	935	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	76.2510473516412	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	14	True	NA	NA	False	AATAAA	-6	NA	34778337	34768663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34769148_34771257_34771415_34771873_34772054_34778223
ES_00039500	chr4	-	761	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	25	0	25	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778398	34768663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34769148_34771257_34771415_34778278
ES_00039501	chr4	-	9990	8	FSM	ENSMUSG00000039967.15	ENSMUST00000047950.6	9986	8	1	-5	1	5	multi-exon	FALSE	canonical	3	109	junction_4	23.430313524081	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTTTTGTTCATGGGGC	-18	True	NA	10	True	AATAAA	-42	NA	34882959	34803107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34882757
ES_00039502	chr4	-	6030	4	FSM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.86744175568088	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTAGTCTGTCGTCTTT	-32	True	NA	NA	False	AATAAA	-16	NA	35157484	34949073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34954048_34985915_34986119_35083769_35084390_35157251
ES_00039506	chr4	-	873	1	FSM	ENSMUSG00000082762.2	ENSMUST00000121722.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATATGAGAAAA	8313	False	NA	NA	False	NA	NA	NA	35202975	35202102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_35202100_35203000
ES_00039507	chr4	-	741	1	FSM	ENSMUSG00000080969.2	ENSMUST00000121654.2	768	1	6	21	6	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACTATGATAATATGTA	NA	False	NA	NA	False	NA	NA	NA	37139868	37139127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_37139100_37139900
ES_00039508	chr4	-	418	1	FSM	ENSMUSG00000081352.2	ENSMUST00000117696.2	418	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGAGCCGACGTACATA	NA	False	NA	NA	False	NA	NA	NA	40117233	40116815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40116800_40117200
ES_00039509	chr4	-	3539	9	FSM	ENSMUSG00000040296.16	ENSMUST00000137903.8	3533	9	0	-6	0	2	multi-exon	FALSE	canonical	3	61	junction_4	6.68487097856047	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTTTTCTGCA	-9	True	NA	NA	False	NA	NA	NA	40220600	40203770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398
ES_00039512	chr4	-	647	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	12	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	2	True	NA	63	True	AGTAAA	-20	NA	40279409	40270590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ES_00039513	chr4	-	480	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	2	True	NA	-11	True	AATAAA	-17	NA	40279409	40270664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40270848_40272809_40272855_40279157
ES_00039514	chr4	-	3799	8	FSM	ENSMUSG00000028411.16	ENSMUST00000068125.11	5383	8	28	1556	28	986	multi-exon	FALSE	canonical	2	3	junction_7	54.3187869180167	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTGCCAGTCTGTGGAT	322	False	NA	NA	False	NA	NA	NA	40702886	40683937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40702723
ES_00039515	chr4	-	5255	8	FSM	ENSMUSG00000028411.16	ENSMUST00000030119.10	5250	8	0	-5	0	5	multi-exon	FALSE	canonical	3	144	junction_6	8.59757915618919	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTCATGCTTTTTGCTA	1	True	NA	NA	False	AATAAA	-30	NA	40703194	40682376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40703136
ES_00039516	chr4	-	1390	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	-12	0	-5	0	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	-4	True	NA	-8	True	AATATA	-17	NA	40703199	40686241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
ES_00039518	chr4	-	2418	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8535	False	NA	61	True	ACTAAA	-34	NA	40757923	40736541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ES_00039519	chr4	-	223	2	FSM	ENSMUSG00000028409.12	ENSMUST00000137415.2	260	2	37	0	37	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGATACTGTTTTACAGG	9097	False	NA	NA	False	NA	NA	NA	40757361	40755699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40755838_40757276
ES_00039520	chr4	-	658	1	FSM	ENSMUSG00000056412.7	ENSMUST00000121600.2	306	1	-183	-169	-183	169	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCACTGGGGGTTGGGCT	6137	False	NA	NA	False	NA	NA	NA	40775747	40775089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40775100_40775700
ES_00039521	chr4	-	3983	6	FSM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	16.0872620417522	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTCTTTTCTTTTTTG	-20	True	NA	-1	True	AATAAA	-18	NA	40854005	40804601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438_40823675_40853390
ES_00039522	chr4	-	1023	1	FSM	ENSMUSG00000081309.4	ENSMUST00000117674.2	615	1	2	-410	2	410	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCAGCCGTCGTTGAC	NA	False	NA	NA	False	NA	NA	NA	40913353	40912330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40912300_40913400
ES_00039523	chr4	-	1307	8	NNC	ENSMUSG00000028416.14	novel	1295	7	NA	NA	0	22615	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	724.312763653822	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAACAATTTGTCACGGGA	3	True	NA	NA	False	NA	NA	NA	40948243	40913782	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_40913811_40936416_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ES_00039525	chr4	-	2406	7	FSM	ENSMUSG00000028416.14	ENSMUST00000030125.5	1295	7	0	-1111	0	1108	multi-exon	FALSE	canonical	3	1821	junction_3	173.811599791907	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGGCTTCAAGGTGCTC	3	True	NA	NA	False	NA	NA	NA	40948243	40935289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ES_00039526	chr4	-	2551	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	92518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCACATCTGGCTCTTGT	-1	True	NA	NA	False	NA	NA	NA	41098183	41000203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_41000990_41092721_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
ES_00039528	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
ES_00039532	chr4	-	4381	29	FSM	ENSMUSG00000028433.15	ENSMUST00000108068.8	4380	29	0	-1	0	1	multi-exon	FALSE	canonical	3	748	junction_17	84.4073804080362	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTCTCCGTGTTCTGGCT	209	False	NA	-2	True	AATAAA	-16	NA	41275144	41194311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ES_00039533	chr4	-	4331	29	NNC	ENSMUSG00000028433.15	novel	4368	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_12	158.993144987642	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	-12	True	NA	-6	True	AATAAA	-12	NA	41275116	41194315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202440_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ES_00039534	chr4	-	418	3	FSM	ENSMUSG00000028433.15	ENSMUST00000136057.2	418	3	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_1	6	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAACCCACCTACGGCAG	7823	False	NA	NA	False	NA	NA	NA	41195765	41195192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41195526_41195607_41195673_41195745
ES_00039535	chr4	-	657	1	FSM	ENSMUSG00000089265.2	ENSMUST00000158640.2	77	1	19	-599	19	599	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTCATCCGTTCCAGCT	8765	False	NA	NA	False	NA	NA	NA	41203114	41202457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41202500_41203100
ES_00039536	chr4	-	735	9	FSM	ENSMUSG00000028433.15	ENSMUST00000134782.2	735	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	420.21653644282	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCGCCAAGTAAAAGTTCT	NA	False	NA	NA	False	NA	NA	NA	41251619	41221588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41245455_41245493_41251534
ES_00039537	chr4	-	690	8	FSM	ENSMUSG00000028433.15	ENSMUST00000132499.2	687	8	0	-3	0	0	multi-exon	FALSE	canonical	3	112	junction_7	316.890697695143	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCGCCAAGTAAAAGTTCT	-12	True	NA	NA	False	NA	NA	NA	41275116	41221588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41275039
ES_00039538	chr4	-	3442	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	1860	False	NA	0	True	AATAAA	-18	NA	41314889	41291299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ES_00039539	chr4	-	5746	14	NIC	ENSMUSG00000028438.17	novel	5593	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_12	9.0651814539423	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTCCAGGCTTTCT	6	True	NA	NA	False	NA	NA	NA	41464848	41390744	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41429266_41429412_41464709
ES_00039540	chr4	-	4333	10	FSM	ENSMUSG00000028438.17	ENSMUST00000030148.6	4333	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	13.8001610296563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTGGTTTGG	6	True	NA	NA	False	TATAAA	-11	NA	41464848	41391610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41423451_41423636_41428344_41428983_41464709
ES_00039541	chr4	-	731	3	FSM	ENSMUSG00000028438.17	ENSMUST00000154535.8	731	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAGTGCCAGACAAAAATAA	8	True	NA	NA	False	NA	NA	NA	41464846	41428533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41428983_41429266_41429412_41464709
ES_00039542	chr4	-	4176	2	FSM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	0	-3	0	3	multi-exon	FALSE	canonical	3	158	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTTTTCTTGCTTAA	8	True	NA	1	True	NA	NA	NA	41503076	41495600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41499691_41502990
ES_00039543	chr4	-	1269	2	FSM	ENSMUSG00000028445.8	ENSMUST00000127306.2	1269	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCCTTTATTTGTGC	9	True	NA	-1	True	AATAAA	-18	NA	41640324	41638143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41639002_41639913
ES_00039544	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	9620	False	NA	-17	True	AATAAA	-14	NA	41713534	41712032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41712815_41713460
ES_00039545	chr4	-	887	6	FSM	ENSMUSG00000028447.12	ENSMUST00000171641.2	885	6	0	-2	0	2	multi-exon	FALSE	canonical	3	44	junction_1	342.598657323697	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTGGGGCATTGTATAT	-9	True	NA	NA	False	GATAAA	-24	NA	41723163	41714795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41715239_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ES_00039546	chr4	-	975	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	0	-2	0	2	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTGGGGCATTGTATAT	-16	True	NA	NA	False	GATAAA	-24	NA	41723170	41714795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ES_00039547	chr4	-	1638	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	0	2	0	-2	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTTTCCTTATGTGTCT	3747	False	NA	NA	False	AATAAA	-15	NA	41741359	41738494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
ES_00039549	chr4	-	589	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	0	1	0	-1	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCGTCTCTTTTATTTC	28	False	NA	4	True	AATAAA	-27	NA	41774142	41769467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
ES_00039550	chr4	-	444	5	FSM	ENSMUSG00000073888.14	ENSMUST00000155322.8	460	5	16	0	4	0	multi-exon	FALSE	canonical	2	7	junction_2	37.729298959827	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACTGTCACCTCCAGGCT	16	False	NA	NA	False	NA	NA	NA	41774154	41769868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41769977_41771137_41771291_41773464_41773525_41773735_41773804_41774099
ES_00039551	chr4	-	1242	4	FSM	ENSMUSG00000073888.14	ENSMUST00000108032.3	350	4	16	-908	0	615	multi-exon	FALSE	canonical	3	34	junction_1	26.6124448749494	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCAAAGCTGACTTTTAG	28	False	NA	NA	False	NA	NA	NA	41774142	41772279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41773351_41773464_41773525_41773735_41773804_41774099
ES_00039552	chr4	-	766	3	FSM	ENSMUSG00000073888.14	ENSMUST00000133572.8	798	3	32	0	2	0	multi-exon	FALSE	canonical	3	80	junction_2	8.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGAGAATCCTCTTTTCC	3	True	NA	NA	False	NA	NA	NA	41774167	41772894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41773525_41773735_41773804_41774099
ES_00039557	chr4	-	2884	15	NIC	ENSMUSG00000028453.11	novel	2974	14	NA	NA	-38	7	combination_of_known_junctions	FALSE	canonical	3	29	junction_14	28.3574127371109	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTATGTGTGTGTGTGTGC	NA	False	NA	1	True	ATTAAA	-23	NA	43010544	43002335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001_43010173_43010255
ES_00039558	chr4	-	2845	15	NIC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-28	2	combination_of_known_junctions	FALSE	canonical	2	6	junction_14	33.2471419670863	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTGTATGTGTGTGTG	-16	True	NA	-4	True	ATTAAA	-18	NA	43010534	43002340	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001_43010173_43010279
ES_00039561	chr4	-	4243	10	FSM	ENSMUSG00000028454.17	ENSMUST00000098109.9	4239	10	0	-4	0	4	multi-exon	FALSE	canonical	3	131	junction_4	26.4280995238864	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGATCTGTGAGGTGCT	5675	False	NA	-3	True	AATAAA	-25	NA	43025756	43017630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
ES_00039562	chr4	-	3600	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	84	junction_10	34.3634980757198	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-10	True	NA	-7	True	AATAAA	-21	NA	43025822	43017634	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
ES_00039563	chr4	-	3525	11	FSM	ENSMUSG00000028454.17	ENSMUST00000067481.6	3525	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	53.2560794651653	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-7	True	NA	-7	True	AATAAA	-21	NA	43025819	43017634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019782_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
ES_00039564	chr4	-	1201	4	FSM	ENSMUSG00000028454.17	ENSMUST00000155429.2	491	4	-438	-272	-438	0	multi-exon	FALSE	canonical	3	11	junction_3	88.8644410824087	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	5668	False	NA	-7	True	AATAAA	-21	NA	43020144	43017634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43018039_43018147_43018219_43019211_43019440_43019646
ES_00039565	chr4	-	1657	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	218	-1	-36	1	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGAGATGGCTGTGGTGA	8807	False	NA	-3	True	AATAAA	-20	NA	43031492	43027688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ES_00039566	chr4	-	902	4	FSM	ENSMUSG00000028455.16	ENSMUST00000125180.2	902	4	0	0	0	0	multi-exon	FALSE	canonical	3	2932	junction_2	205.452887273187	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	8817	False	NA	-7	True	AATAAA	-16	NA	43029837	43028025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43028294_43028937_43029359_43029492_43029638_43029769
ES_00039568	chr4	-	630	6	FSM	ENSMUSG00000028455.16	ENSMUST00000123465.8	630	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	1146.4750149916	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGGGAAGAAACAGGCCC	8849	False	NA	NA	False	NA	NA	NA	43031450	43029563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030970_43031109_43031328
ES_00039569	chr4	-	351	4	FSM	ENSMUSG00000028455.16	ENSMUST00000142781.2	520	4	187	-18	187	0	multi-exon	FALSE	canonical	3	2647	junction_2	246.84858156818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAAGGGACACGAGAGTCAG	9987	False	NA	NA	False	NA	NA	NA	43030312	43029596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43029638_43029769_43029905_43030048_43030151_43030239
ES_00039570	chr4	-	638	7	FSM	ENSMUSG00000028455.16	ENSMUST00000138030.2	638	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	1112.50384518686	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAAGGGACACGAGAGTCAG	8929	False	NA	NA	False	NA	NA	NA	43031370	43029596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031130_43031328
ES_00039574	chr4	-	3280	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_8	13.7636296085008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	11	True	NA	2	True	AATAAA	-21	NA	43040288	43032413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43039965
ES_00039575	chr4	-	3069	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	38	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	6.5	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	447	False	NA	2	True	AATAAA	-21	NA	43045759	43032413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
ES_00039578	chr4	-	8244	58	NNC	ENSMUSG00000028465.17	novel	8393	57	NA	NA	-89	51471	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	52.7396667894525	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATAAGAAAGCTCCTT	-13	True	NA	NA	False	NA	NA	NA	43562246	43480047	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_43480074_43531517_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549085_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
ES_00039581	chr4	-	1887	8	FSM	ENSMUSG00000051517.15	ENSMUST00000125834.8	1508	8	50	-429	0	47	multi-exon	FALSE	canonical	3	106	junction_5	13.3248272186983	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCTCGGTAGCCTCAG	9135	False	NA	44	True	NA	NA	NA	43499611	43496094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43496721_43496820_43496910_43497086_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ES_00039584	chr4	-	8402	57	FSM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	0	-9	0	9	multi-exon	FALSE	canonical	2	114	junction_34	45.4919257244893	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTATGAGGAGACGG	-9	True	NA	3	True	AATAAA	-21	NA	43562422	43531509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549085_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
ES_00039585	chr4	-	932	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	0	5	0	-5	multi-exon	FALSE	canonical	3	68	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTATTATCTTCATATTTT	NA	False	NA	-35	True	NA	NA	NA	43562691	43559347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43559718_43562129
ES_00039586	chr4	-	3544	17	FSM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	9.51314879522022	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGGTGTGTCTGAG	-7	True	NA	-1	True	AATAAA	-16	NA	43578873	43566927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
ES_00039588	chr4	-	518	1	ISM	ENSMUSG00000043633.7	ENSMUST00000134487.2	3913	3	4711	821	4707	-821	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTATTATTTTTAAAGTCT	4775	False	NA	NA	False	NA	NA	NA	43664434	43663916	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_43663900_43664400
ES_00039589	chr4	-	2880	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	40	0	-2	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	280	False	NA	-6	True	NA	NA	NA	44072738	44036825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
ES_00039590	chr4	-	3129	3	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	44	20852	2	2022	5prime_fragment	FALSE	canonical	3	64	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAAGCTTATTTTGTGT	284	False	NA	NA	False	AATAAA	-17	NA	44072734	44057677	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_44060228_44066754_44066961_44072361
ES_00039592	chr4	-	5246	12	FSM	ENSMUSG00000035696.16	ENSMUST00000102934.9	5240	12	0	-6	0	1	multi-exon	FALSE	canonical	3	13	junction_10	22.7367253069995	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGTTTCATGTAAGGCGT	-11	True	NA	1	True	AATAAA	-27	NA	44167951	44126208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44158902_44159053_44167626
ES_00039593	chr4	-	5209	11	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	-59	1	combination_of_known_junctions	FALSE	canonical	3	27	junction_10	15.9874951133691	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGTTTCATGTAAGGCGT	-21	True	NA	1	True	AATAAA	-27	NA	44168064	44126208	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167626
ES_00039594	chr4	-	5102	11	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	119	-1	combination_of_known_junctions	FALSE	canonical	1	4	junction_10	21.5455331797568	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAAGTCGTGTTTCATGT	1464	False	NA	-6	True	AATAAA	-20	NA	44167803	44126215	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167465
ES_00039597	chr4	-	5548	2	FSM	ENSMUSG00000049657.10	ENSMUST00000107817.3	3867	2	58	-1739	40	0	multi-exon	FALSE	canonical	3	12	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGGTCTCCTTTGCTTC	NA	False	NA	0	True	ATTAAA	-26	NA	45012354	44991241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44995387_45010951
ES_00039598	chr4	-	4339	2	FSM	ENSMUSG00000049657.10	ENSMUST00000055028.9	4316	2	-23	0	-5	0	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGGTCTCCTTTGCTTC	NA	False	NA	0	True	ATTAAA	-26	NA	45012417	44991241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44995387_45012223
ES_00039600	chr4	-	658	3	NNC	ENSMUSG00000078713.9	novel	679	3	NA	NA	0	21676	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1088	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTAGGGTGATTGACTG	-10	True	NA	NA	False	NA	NA	NA	45108108	45083531	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_45083558_45105208_45105645_45107912
ES_00039601	chr4	-	699	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	0	-60	0	60	multi-exon	FALSE	canonical	3	2176	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCGACTATTGCTCCTG	-16	True	NA	NA	False	NA	NA	NA	45108114	45105147	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_45105645_45107912
ES_00039602	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	-10	True	NA	NA	False	AATAAA	-14	NA	45108108	45105211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_45105645_45106838_45106889_45107912
ES_00039605	chr4	-	1005	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCATTATGTGAGATG	-16	True	NA	NA	False	NA	NA	NA	45408760	45399240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_45400180_45408694
ES_00039608	chr4	-	3729	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107772.8	3726	10	0	-3	0	3	multi-exon	FALSE	canonical	3	146	junction_3	21.9291789378647	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGAAGAGTGCTCTGTG	223	False	NA	0	True	AATAAA	-28	NA	46138475	46114742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
ES_00039610	chr4	-	3637	10	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	-5	12	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_3	52.704627669473	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTCTGTGCTGGTGCGT	-29	True	NA	9	True	AATAAA	-37	NA	46138460	46114733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_46117084_46119142_46119282_46119840_46119914_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
ES_00039611	chr4	-	1547	6	FSM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	18.8722017793367	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAGAGTAACATTTA	18	True	NA	NA	False	NA	NA	NA	46138413	46123404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
ES_00039613	chr4	-	955	6	FSM	ENSMUSG00000028329.14	ENSMUST00000030013.12	955	6	1	-1	1	1	multi-exon	FALSE	canonical	3	75	junction_2	5.6	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGATGCAGTCTTCACAGAA	5	True	NA	0	True	AATAAA	-19	NA	46196310	46175220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_46175416_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
ES_00039614	chr4	-	1133	7	NIC	ENSMUSG00000028329.14	novel	955	6	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	36.783148315499	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATGCAGTCTTCACAGA	18	False	NA	-1	True	AATAAA	-18	NA	46196297	46175221	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_46175416_46180206_46180399_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
ES_00039616	chr4	-	1531	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	-4	0	4	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAGCTTTGAATATTC	-14	True	NA	NA	False	ATTAAA	-31	NA	46389437	46379859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
ES_00039617	chr4	-	4316	13	FSM	ENSMUSG00000039813.15	ENSMUST00000084621.12	4315	13	0	-1	0	1	multi-exon	TRUE	canonical	2	8	junction_12	4.63381292481928	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTCTGGGCTGCCTGAA	-14	True	NA	2	True	AATAAA	-16	NA	46650209	46604388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_46605969_46606382_46606505_46606969_46607156_46608982_46609104_46613947_46614425_46615026_46615209_46616253_46616365_46620446_46620822_46628340_46628538_46629875_46630010_46637588_46637737_46646116_46646259_46649668
ES_00039620	chr4	-	1016	1	FSM	ENSMUSG00000081953.2	ENSMUST00000118949.2	1016	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGGAACATTTGAGT	NA	False	NA	NA	False	NA	NA	NA	48345230	48344214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_48344200_48345200
ES_00039622	chr4	-	598	2	FSM	ENSMUSG00000028345.16	ENSMUST00000138531.2	598	2	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAAGATAGTTCTTGTG	9502	False	NA	NA	False	AATAAA	-29	NA	48459303	48458168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_48458714_48459250
ES_00039623	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_49514578_49520961
ES_00039624	chr4	-	2092	3	NNC	ENSMUSG00000044018.4	novel	2114	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	143	junction_1	569	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_49512737_49512758_49514578_49520961
ES_00039627	chr4	-	334	1	FSM	ENSMUSG00000083338.2	ENSMUST00000119476.2	1389	1	94	961	94	-961	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCCCATCTTCCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	52362117	52361783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_52361800_52362100
ES_00039628	chr4	-	10309	50	FSM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	-47	0	-47	0	multi-exon	FALSE	canonical	2	9	junction_41	9.14791223225713	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAAGTTCCTTTTGTGCA	NA	False	NA	-3	True	AATAAA	-24	NA	53159942	53030786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030_53067156_53068686_53068836_53069791_53069906_53070075_53070125_53071822_53072026_53072897_53072971_53074219_53074441_53075130_53075269_53075446_53075590_53076890_53077023_53077942_53078115_53079570_53079685_53080765_53080971_53081921_53082144_53083716_53083940_53084383_53084561_53085095_53085302_53085992_53086191_53089798_53089916_53090253_53090394_53092728_53092970_53095584_53095678_53107005_53107183_53109163_53109286_53127596_53127716_53128720_53128863_53132921_53133016_53143929_53144096_53159675
ES_00039630	chr4	-	1838	2	Intergenic	novelGene_2784	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATCTAACAAAAACATAAC	NA	False	NA	NA	False	NA	NA	NA	55331192	55314226	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_55316055_55331182
ES_00039633	chr4	-	809	3	FSM	ENSMUSG00000028431.12	ENSMUST00000139445.2	846	3	51	-14	51	14	multi-exon	FALSE	canonical	3	395	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAACATGCAGTGCCA	NA	False	NA	NA	False	ATTAAA	-25	NA	56758340	56754853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_56755380_56757116_56757272_56758212
ES_00039634	chr4	-	1808	5	FSM	ENSMUSG00000038816.15	ENSMUST00000131231.2	654	5	52	-1206	52	1	multi-exon	FALSE	canonical	3	19	junction_4	112.62548557054	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACCGACTGGCTTAATT	NA	False	NA	-5	True	AATAAA	-22	NA	56814267	56810933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56814169
ES_00039635	chr4	-	3665	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	0	-1	0	1	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACCGACTGGCTTAATT	-17	True	NA	-5	True	AATAAA	-22	NA	56865188	56810933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
ES_00039636	chr4	-	3371	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	4	True	NA	-6	True	AATAAA	-21	NA	56846072	56810934	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
ES_00039639	chr4	-	8424	17	NIC	ENSMUSG00000055296.15	novel	15981	18	NA	NA	-5	5428	combination_of_known_junctions	FALSE	canonical	3	49	junction_13	10.0853777197485	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTAGCAGTTTTTAAAAC	0	True	NA	NA	False	NA	NA	NA	56947429	56874447	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56923338_56923509_56924978_56925216_56926176_56926294_56936368_56936471_56937861_56937980_56946844
ES_00039640	chr4	-	1787	12	FSM	ENSMUSG00000055296.15	ENSMUST00000132816.8	1787	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	8.47553601513212	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGCCCTTGTCAGCGAG	NA	False	NA	NA	False	NA	NA	NA	56923458	56879875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56923338
ES_00039642	chr4	-	3247	16	FSM	ENSMUSG00000028434.13	ENSMUST00000030142.4	3247	16	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	13.208414826247	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTTACAATGTGTCTC	315	False	NA	0	True	AATAAA	-32	NA	57143437	57061725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57063280_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57076913_57077003_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423_57103529_57142847
ES_00039643	chr4	-	771	10	FSM	ENSMUSG00000028434.13	ENSMUST00000149109.8	771	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	45.8680340020136	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTTACCCGTCCCGGC	NA	False	NA	NA	False	NA	NA	NA	57103453	57073299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57073372_57076290_57076461_57076533_57076604_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423
ES_00039644	chr4	-	6229	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	64	-5	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	7.95044652834041	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTCTTGTCTGTCAAC	-1	True	NA	-5	True	TATAAA	-19	NA	57300311	57190845	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300280
ES_00039645	chr4	-	1002	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	False	NA	NA	False	NA	NA	NA	57371954	57370952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57371000_57372000
ES_00039646	chr4	-	2804	2	FSM	ENSMUSG00000052117.6	ENSMUST00000063816.6	2830	2	3	23	3	-23	multi-exon	FALSE	canonical	3	12	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAACTTTGTCTTTTGGT	0	True	NA	NA	False	AATGAA	-24	NA	57916294	57908505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57910612_57915596
ES_00039648	chr4	-	3430	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	4453	3	combination_of_known_junctions	FALSE	canonical	3	76	junction_3	93.203481098556	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTCTGGTCTGTGC	9810	False	NA	-2	True	AATAAA	-25	NA	58543948	58435251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809
ES_00039649	chr4	-	3515	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	0	-3	0	3	multi-exon	FALSE	canonical	3	120	junction_3	72.8941393772885	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTCTGGTCTGTGC	401	False	NA	-2	True	AATAAA	-25	NA	58553357	58435251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
ES_00039650	chr4	-	3477	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-17	3	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTCTGGTCTGTGC	NA	False	NA	-2	True	AATAAA	-25	NA	58553915	58435251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
ES_00039651	chr4	-	3497	4	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	5536	1	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_3	114.601725796585	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGGTTCTGGTCTGT	2846	False	NA	-4	True	AATAAA	-23	NA	58542865	58435253	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58542657
ES_00039653	chr4	-	6030	50	NIC	ENSMUSG00000050812.19	novel	7045	49	NA	NA	0	-1119	combination_of_known_junctions	TRUE	canonical	3	17	junction_49	33.7119878645701	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTCCTTATTAGCTTT	-22	True	NA	-12	True	AATAAA	-19	NA	58912749	58800029	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58905003_58905108_58912475
ES_00039655	chr4	-	2284	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	12	0	-12	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATTACCACTGCTGGC	5	True	NA	NA	False	NA	NA	NA	58987119	58965450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ES_00039656	chr4	-	2661	12	NNC	ENSMUSG00000038598.10	novel	4664	28	NA	NA	-6724	99	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	5.11681719253465	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGTATGAAGTATCAGAAG	1	True	NA	NA	False	NA	NA	NA	59117837	59081032	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879_59086982_59092350_59092502_59093848_59093934_59094129_59094284_59099251_59099431_59109585_59109668_59111092_59111205_59113897_59113978_59117784
ES_00039658	chr4	-	3295	17	FSM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	14.4566971936885	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTGGGTTTTGTGGT	31	False	NA	NA	False	TATAAA	-21	NA	59438633	59314682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ES_00039659	chr4	-	2182	12	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	204	-31	combination_of_known_splicesites	FALSE	canonical	2	2	junction_11	25.6544101536281	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCATGTGACAATAAATAAA	235	False	NA	NA	False	NA	NA	NA	59438429	59329240	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59438205
ES_00039660	chr4	-	6855	14	FSM	ENSMUSG00000028382.16	ENSMUST00000030076.12	6855	14	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	23.0463900573291	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTTCTGTGTTCTTGTC	NA	False	NA	-4	True	AATAAA	-26	NA	59549364	59471867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59549147
ES_00039661	chr4	-	6813	15	FSM	ENSMUSG00000028382.16	ENSMUST00000174586.8	6640	15	11	-184	0	4	multi-exon	FALSE	canonical	3	35	junction_14	45.4889535817124	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTTCTTGTCTGTA	5	True	NA	0	True	AATAAA	-30	NA	59549284	59471863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59546148_59546183_59549147
ES_00039664	chr4	-	3228	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	0	-1790	0	130	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGTGTGCGCGTCCAGA	30	True	NA	NA	False	NA	NA	NA	59783808	59769506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
ES_00039665	chr4	-	1665	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	-11	0	0	0	multi-exon	FALSE	canonical	3	236	junction_2	17	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTATATAATTATTTT	-11	True	NA	NA	False	AATAAA	-20	NA	59783849	59774087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59775550_59782253_59782335_59783727
ES_00039666	chr4	-	1485	4	NNC	ENSMUSG00000038544.15	novel	1654	3	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	109.77552854196	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCCCCTTATATAATT	30	True	NA	NA	False	AATAAA	-15	NA	59783808	59774092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_59775313_59775446_59775550_59782253_59782335_59783727
ES_00039667	chr4	-	3500	4	FSM	ENSMUSG00000028389.13	ENSMUST00000068822.4	3494	4	0	-6	0	6	multi-exon	FALSE	canonical	3	7	junction_3	14.142135623731	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATTTTATTTTATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	62126683	62107770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126556
ES_00039668	chr4	-	3565	4	FSM	ENSMUSG00000028389.13	ENSMUST00000221329.2	1776	4	-159	-1630	-74	6	multi-exon	FALSE	canonical	3	15	junction_3	10.3708994574027	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATTTTATTTTATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	62126757	62107770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126565
ES_00039671	chr4	-	2392	10	NNC	ENSMUSG00000066151.13	novel	3279	18	NA	NA	17652	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_9	34.5643075733435	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTTCCTTTTTGGGA	NA	False	NA	0	True	NA	NA	NA	62232879	62218577	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62232796
ES_00039672	chr4	-	4265	28	FSM	ENSMUSG00000066151.13	ENSMUST00000084527.10	4264	28	0	-1	0	1	multi-exon	FALSE	canonical	3	62	junction_18	17.8933741789013	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTTCCTTTTTGGGA	6994	False	NA	0	True	NA	NA	NA	62278707	62218577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
ES_00039673	chr4	-	4874	21	FSM	ENSMUSG00000066151.13	ENSMUST00000239461.2	4883	21	0	9	0	-9	multi-exon	FALSE	canonical	3	62	junction_17	18.5835276521978	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAAGTAAAATTGGTCT	NA	False	NA	NA	False	AATAAA	-10	NA	62256732	62219455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722
ES_00039676	chr4	-	1069	4	FSM	ENSMUSG00000066151.13	ENSMUST00000131977.2	1739	4	0	670	0	-670	multi-exon	FALSE	canonical	3	72	junction_2	12.5698050899765	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGGTCACCCGATCCTCA	6995	False	NA	NA	False	NA	NA	NA	62278706	62263043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62263815_62264293_62264379_62270669_62270783_62278606
ES_00039677	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	2664	False	NA	NA	False	AATAAA	-18	NA	62326879	62312819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ES_00039680	chr4	-	1440	11	FSM	ENSMUSG00000028391.17	ENSMUST00000030087.14	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	19.4548194543152	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATTTGAAAAATCAGG	NA	False	NA	96	True	NA	NA	NA	62389124	62371870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
ES_00039684	chr4	-	1227	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	0	-21	0	21	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCTGCTGGCAGGGTGCA	NA	False	NA	20	True	AGTAAA	-39	NA	62438155	62427384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
ES_00039687	chr4	-	4053	12	FSM	ENSMUSG00000039137.19	ENSMUST00000063650.10	4016	12	-40	3	0	-3	multi-exon	FALSE	canonical	3	12	junction_3	10.7826000023147	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGGCCAGTGTTCTAT	4478	False	NA	-10	True	AATAAA	-15	NA	63414228	63333149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658_63337731_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ES_00039688	chr4	-	4015	12	FSM	ENSMUSG00000039137.19	ENSMUST00000102867.8	4013	12	0	-2	0	2	multi-exon	FALSE	canonical	2	8	junction_3	11.3705433554579	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCAGTGTTCTATGCTGT	4518	False	NA	-5	True	AATAAA	-20	NA	63414188	63333144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_63333904_63334238_63334362_63334648_63334828_63336324_63336860_63337658_63337731_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ES_00039691	chr4	-	615	1	FSM	ENSMUSG00000084345.4	ENSMUST00000120241.2	555	1	-26	-34	-26	34	mono-exon	FALSE	NA	NA	NA	NA	NA	659	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGTCAGGCATTA	NA	False	NA	NA	False	AATAAA	-34	NA	63814362	63813747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_63813700_63814400
ES_00039692	chr4	-	1111	1	FSM	ENSMUSG00000081941.2	ENSMUST00000121364.2	1214	1	181	-78	181	78	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTCCCAAGTCACTG	NA	False	NA	NA	False	NA	NA	NA	64776195	64775084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_64775100_64776200
ES_00039694	chr4	-	1043	1	FSM	ENSMUSG00000084342.2	ENSMUST00000120465.2	1111	1	159	-91	159	91	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	69873354	69872311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_69872300_69873400
ES_00039695	chr4	-	11847	37	FSM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_29	30.4796025702355	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTATTATATTCATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	70328680	70135092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
ES_00039700	chr4	-	562	1	FSM	ENSMUSG00000083914.4	ENSMUST00000120838.2	459	1	-42	-61	-42	61	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTCTCATCTACTCCTA	NA	False	NA	NA	False	AATAAA	-36	NA	71289475	71288913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_71288900_71289500
ES_00039702	chr4	-	4507	20	FSM	ENSMUSG00000008305.19	ENSMUST00000072695.13	3644	20	-169	-694	-107	31	multi-exon	TRUE	canonical	3	132	junction_8	62.2917361117158	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGAGTTCACGTCCCT	NA	False	NA	NA	False	AATATA	-44	NA	72119263	72035347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00039703	chr4	-	2983	20	NNC	ENSMUSG00000008305.19	novel	3644	20	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_13	91.8707390140115	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	False	NA	81	True	AGTAAA	-18	NA	72118378	72036041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72076449_72076655_72079304_72079377_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00039705	chr4	-	3458	18	NIC	ENSMUSG00000008305.19	novel	3644	20	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_12	75.0867088160778	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	False	NA	81	True	AGTAAA	-18	NA	72119130	72036041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00039708	chr4	-	2231	7	FSM	ENSMUSG00000008305.19	ENSMUST00000107337.8	2067	7	-165	1	-108	-1	multi-exon	FALSE	canonical	3	194	junction_1	41.6959896819293	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGCCTGTGTTCTAATT	NA	False	NA	-1	True	AATAAA	-19	NA	72119264	72075817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00039709	chr4	-	2103	7	ISM	ENSMUSG00000008305.19	ENSMUST00000030095.11	2569	20	-717	39376	-7	-1	5prime_fragment	FALSE	canonical	3	29	junction_1	99.9656885580692	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGCCTGTGTTCTAATT	NA	False	NA	-1	True	AATAAA	-19	NA	72119106	72075817	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_72076655_72087328_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00039710	chr4	-	2086	7	NNC	ENSMUSG00000008305.19	novel	2067	7	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	98.8714091917151	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGCCTGTGTTCTAATT	NA	False	NA	-1	True	AATAAA	-19	NA	72119122	72075817	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_72076652_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00039714	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75196542	75195590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_75196007_75196217
ES_00039716	chr4	-	411	3	FSM	ENSMUSG00000028402.19	ENSMUST00000129732.2	754	3	0	343	0	-343	multi-exon	FALSE	canonical	3	8	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAGAAACCAAGTAGCATAA	NA	False	NA	NA	False	NA	NA	NA	81211066	81208467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_81208616_81210655_81210850_81210997
ES_00039717	chr4	-	8437	9	FSM	ENSMUSG00000008575.18	ENSMUST00000064770.9	8429	9	0	-8	0	5	multi-exon	FALSE	canonical	3	11	junction_1	6.11861912526021	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGTGTTTTATTTTTCT	NA	False	NA	5	True	AATAAA	-23	NA	82423545	82208404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_82215049_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ES_00039718	chr4	-	8775	12	FSM	ENSMUSG00000008575.18	ENSMUST00000050872.15	8770	12	0	-5	0	5	multi-exon	FALSE	canonical	2	7	junction_3	7.01238573660978	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGTGTTTTATTTTTCT	NA	False	NA	5	True	AATAAA	-23	NA	82423545	82208404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_82215049_82228539_82228629_82238710_82238794_82241781_82241948_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ES_00039722	chr4	-	8624	10	NNC	ENSMUSG00000028403.16	novel	8763	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	26	junction_1	21.7766439614148	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTTTTTATCCTCTTA	NA	False	NA	-10	True	AATAAA	-18	NA	82777791	82716974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_82718375_82718394_82724699_82725249_82725294_82738566_82738684_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
ES_00039725	chr4	-	1866	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	-62	0	-46	0	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	83242538	83158046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ES_00039726	chr4	-	1030	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	-112	-76	-46	76	multi-exon	FALSE	canonical	2	10	junction_1	86.0905531015647	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCCCTTTTGTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	83242538	83177358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ES_00039727	chr4	-	3251	16	FSM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_5	345.826738892951	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTATTAGTAAGTTATTAT	NA	False	NA	-4	True	ATTAAA	-16	NA	83404696	83373916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ES_00039729	chr4	-	448	2	Genic_Genomic	ENSMUSG00000066116.4	novel	354	1	NA	NA	-31	46410	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCCACAAAACAAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	83423806	83377011	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_83377037_83423383
ES_00039730	chr4	-	445	2	Genic_Genomic	ENSMUSG00000066116.4	novel	354	1	NA	NA	-29	46410	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCCACAAAACAAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	83423804	83377011	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_83377039_83423386
ES_00039731	chr4	-	1837	11	NNC	ENSMUSG00000028484.17	novel	1973	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	221	junction_1	470.836925060047	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404688	83380107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_83380657_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ES_00039732	chr4	-	1977	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107214.9	1973	11	0	-4	0	4	multi-exon	FALSE	canonical	3	116	junction_1	501.525034270474	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTAGGTATTTTTTTTT	NA	False	NA	98	True	AATAAA	-23	NA	83404690	83380103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_83380791_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ES_00039733	chr4	-	1902	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	0	-4	0	4	multi-exon	FALSE	canonical	3	354	junction_1	432.133081353418	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTAGGTATTTTTTTTT	NA	False	NA	98	True	AATAAA	-23	NA	83404695	83380103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_83380711_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ES_00039738	chr4	-	1692	4	FSM	ENSMUSG00000028492.14	ENSMUST00000151481.8	1716	4	24	0	24	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAAGGAAAATGACACA	NA	False	NA	NA	False	NA	NA	NA	86457330	86362877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86364055_86397109_86397316_86405976_86406157_86457201
ES_00039739	chr4	-	6158	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_2	24.1993672437938	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGAATTCCCTGTATT	NA	False	NA	-7	True	AATAAA	-16	NA	86530292	86497091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
ES_00039740	chr4	-	2302	15	FSM	ENSMUSG00000038047.19	ENSMUST00000128381.8	2302	15	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_12	19.1012340663409	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTAAAAAAAAAATTCTGG	NA	False	NA	NA	False	NA	NA	NA	86530292	86503263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
ES_00039741	chr4	-	1669	9	Fusion	ENSMUSG00000081169.2_ENSMUSG00000028494.13	novel	1888	8	NA	NA	-236	-90	multi-exon	TRUE	canonical	0	0	junction_1	194.707472892028	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGCATGATGTTGCTG	NA	False	NA	NA	False	AGTAAA	-13	NA	86588533	86545401	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_-_86545466_86575320_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ES_00039742	chr4	-	1798	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	0	90	0	-90	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGCTTGGGCAGCTTGA	NA	False	NA	30	True	NA	NA	NA	86588297	86574891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ES_00039746	chr4	-	862	6	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	0	2210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8273.35633464436	1517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGCATGTATACCTGCAT	NA	False	NA	NA	False	NA	NA	NA	86775591	86770686	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_86770731_86772898_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ES_00039747	chr4	-	858	6	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	0	2210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8273.35633464436	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGCATGTATACCTGCAT	NA	False	NA	NA	False	NA	NA	NA	86775591	86770686	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_86770727_86772898_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ES_00039749	chr4	-	919	6	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	0	2208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8273.35633464436	1237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCAGCATGTATACCTGC	NA	False	NA	NA	False	NA	NA	NA	86775649	86770688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_86770733_86772899_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ES_00039750	chr4	-	878	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	1263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775649	86772896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ES_00039751	chr4	-	1128	4	FSM	ENSMUSG00000028495.15	ENSMUST00000136174.8	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	4247.77282820068	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAGGAAGCCAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	86775582	86773040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964
ES_00039754	chr4	-	6054	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	12	3	12	-3	multi-exon	TRUE	canonical	2	10	junction_9	3.7	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTGACTCCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	87951589	87688164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
ES_00039755	chr4	-	636	1	FSM	ENSMUSG00000078480.4	ENSMUST00000121413.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	972	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGCAAGCCCTTCAT	4801	False	NA	NA	False	NA	NA	NA	88518047	88517411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_88517400_88518000
ES_00039756	chr4	-	4174	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGTATTGCTTTTTT	NA	False	NA	-1	True	NA	NA	NA	88640702	88636528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_88636500_88640700
ES_00039757	chr4	-	514	1	FSM	ENSMUSG00000083989.3	ENSMUST00000120724.3	493	1	-37	16	-37	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGCATGGGAATAAATTC	NA	False	NA	NA	False	AAGAAA	-36	NA	89080465	89079951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_89080000_89080500
ES_00039762	chr4	-	3781	6	NIC	ENSMUSG00000008489.19	novel	3671	6	NA	NA	0	113	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	36.2082863444267	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCGAGTTGAAAGCTGTGC	NA	False	NA	NA	False	AATAAA	-43	NA	91260271	91138886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_91141805_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ES_00039765	chr4	-	240	2	ISM	ENSMUSG00000066107.7	ENSMUST00000123179.2	764	4	682	9	682	-9	3prime_fragment	FALSE	canonical	3	296	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTCCAAGTAAGTGGCCA	NA	False	NA	NA	False	NA	NA	NA	92079304	92078989	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_92079129_92079203
ES_00039768	chr4	-	908	5	FSM	ENSMUSG00000087128.8	ENSMUST00000133884.8	925	5	17	0	4	0	multi-exon	FALSE	canonical	1	1	junction_1	7.28010988928052	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATGTTCTGGGCTGGA	NA	False	NA	NA	False	CATAAA	-17	NA	94365400	94349167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94349593_94352666_94352793_94353653_94353778_94356020_94356103_94365249
ES_00039770	chr4	-	2110	6	FSM	ENSMUSG00000028578.9	ENSMUST00000030313.9	2107	6	0	-3	0	3	multi-exon	FALSE	canonical	3	225	junction_2	22.29798197147	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATATCTTTTGCTTCATT	NA	False	NA	NA	False	AATAAA	-25	NA	94445033	94388314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444698
ES_00039771	chr4	-	1825	2	FSM	ENSMUSG00000028578.9	ENSMUST00000153294.2	2075	2	0	250	0	-250	multi-exon	FALSE	canonical	3	294	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTTGATTTGGAATAT	NA	False	NA	NA	False	NA	NA	NA	94445003	94438182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94439703_94444698
ES_00039773	chr4	-	4437	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	0	-1653	0	0	multi-exon	TRUE	canonical	3	626	junction_12	53.7532164993284	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCATCCTGGTGCC	NA	False	NA	-10	True	ATTAAA	-5	NA	94491481	94455750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
ES_00039775	chr4	-	3926	1	Genic_Genomic	ENSMUSG00000062627.10	novel	NA	NA	NA	NA	7426	3	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAGCAATGTTATTGAA	NA	False	NA	3	True	AATAAA	-28	NA	94834199	94830273	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_94830300_94834200
ES_00039776	chr4	-	7413	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	10	-3	10	3	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAGCAATGTTATTGAA	NA	False	NA	3	True	AATAAA	-28	NA	94867327	94830273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
ES_00039778	chr4	-	1286	3	FSM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	-15	-567	10	567	multi-exon	FALSE	canonical	3	64	junction_1	6	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATAGCATATACTCTTT	NA	False	NA	NA	False	NA	NA	NA	94867327	94860102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94861226_94863453_94863530_94867240
ES_00039779	chr4	-	381	1	FSM	ENSMUSG00000081030.2	ENSMUST00000119789.2	464	1	199	-116	199	116	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	5156	False	NA	NA	False	AATAAA	-16	NA	94927663	94927282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94927300_94927700
ES_00039780	chr4	-	3132	1	FSM	ENSMUSG00000052684.5	ENSMUST00000107094.2	3189	1	27	30	27	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAAATAATGGTTTTTA	5536	False	NA	NA	False	AATAAA	-3	NA	94940432	94937300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_94937300_94940400
ES_00039781	chr4	-	3284	9	FSM	ENSMUSG00000052914.5	ENSMUST00000030303.6	3605	9	40	281	40	-281	multi-exon	FALSE	canonical	1	1	junction_1	1.40867845869808	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCCATGTTCAGTTGAT	NA	False	NA	NA	False	NA	NA	NA	96441858	96404655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_96406443_96411939_96412079_96414075_96414264_96417621_96417761_96419868_96420046_96423682_96423844_96424232_96424383_96433935_96434099_96441478
ES_00039782	chr4	-	255	1	FSM	ENSMUSG00000084159.2	ENSMUST00000122361.2	905	1	632	18	632	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGGATGACTCTTAAGC	NA	False	NA	NA	False	AAAAAG	-39	NA	97409937	97409682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_97409700_97409900
ES_00039783	chr4	-	1016	8	NNC	ENSMUSG00000028563.17	novel	1027	7	NA	NA	-22	20324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.594895849016	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAACCCCAGTCCCCTGT	NA	False	NA	NA	False	NA	NA	NA	98271505	98223282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_98223310_98243606_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268925_98271302
ES_00039785	chr4	-	989	7	NNC	ENSMUSG00000028563.17	novel	1027	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	529	junction_2	26.6958174002346	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271505	98243606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268925_98271302
ES_00039786	chr4	-	989	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	38	0	-22	0	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271505	98243606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
ES_00039787	chr4	-	4931	10	FSM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	-136	0	-136	0	multi-exon	FALSE	canonical	1	2	junction_7	7.99228022593531	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTACGATTTCTTTG	NA	False	NA	-11	True	ATTAAA	-15	NA	98705910	98643134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619_98661708_98662910_98663130_98665235_98665348_98666500_98668430_98673895_98673979_98705662
ES_00039788	chr4	-	4895	10	NNC	ENSMUSG00000035407.9	novel	4795	10	NA	NA	-141	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	9.18936583472681	150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACGATTTCTTTGCTCTT	NA	False	NA	-6	True	ATTAAA	-20	NA	98705915	98643129	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619_98661708_98662910_98663130_98665281_98665348_98666500_98668430_98673895_98673979_98705662
ES_00039791	chr4	-	2808	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	0	-2	0	2	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAGGGTGCAAGGCAAAA	NA	False	NA	NA	False	AATATA	-41	NA	99717423	99653636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
ES_00039794	chr4	-	5056	25	FSM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	0	-150	0	150	multi-exon	FALSE	canonical	3	155	junction_18	17.726657186283	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCACAGGCTGGCATAGT	NA	False	NA	NA	False	NA	NA	NA	101122479	101009413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021654_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
ES_00039797	chr4	-	1036	5	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9906	70092	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.796601655562	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACAAAATAACAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	101760892	101677124	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101677150_101747219_101747741_101747885_101748198_101760342_101760431_101760802
ES_00039799	chr4	-	2733	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9906	1719	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGTCCTTCATGATTTT	NA	False	NA	NA	False	NA	NA	NA	101760892	101745497	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
ES_00039800	chr4	-	3189	3	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9913	1796	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	141	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCAGACTGTATCTTCA	NA	False	NA	NA	False	NA	NA	NA	101760899	101745420	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101747741_101747885_101748198_101760342
ES_00039801	chr4	-	913	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	115.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101750986	101747216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_101747741_101747885_101748198_101750909
ES_00039802	chr4	-	3151	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9727	2352	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGGTTAGTTTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	101828519	101822297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101824980_101825125_101825438_101828362
ES_00039803	chr4	-	584	2	Antisense	novelGene_ENSMUSG00000028524.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTGGAAATCTTTGCG	NA	False	NA	NA	False	ATTAAA	-17	NA	102702382	102698523	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_102698876_102702150
ES_00039804	chr4	-	3974	13	NNC	ENSMUSG00000028521.18	novel	4021	12	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	14.7221960167482	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTAGAATTCCTTCC	5662	False	NA	2	True	AATAAA	-17	NA	103071996	103027845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_103030048_103030097_103030978_103042018_103042102_103046983_103047063_103048028_103048097_103062302_103062396_103065306_103065410_103067725_103067795_103068499_103068572_103070361_103070430_103071067_103071155_103071255_103071290_103071860
ES_00039806	chr4	-	1251	9	NNC	ENSMUSG00000028521.18	novel	663	6	NA	NA	-17	3989	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	16.0891073400609	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCAGAGTTAGAAGTTGA	5280	False	NA	NA	False	AATACA	-38	NA	103072378	103054368	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_103054576_103062302_103062396_103065306_103065410_103067725_103067795_103068499_103068572_103070361_103070430_103071067_103071155_103071255_103071290_103071860
ES_00039807	chr4	-	7969	9	FSM	ENSMUSG00000028518.9	ENSMUST00000030243.8	7969	9	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_5	8.06903804675625	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTCTGAAGCTGCCTT	NA	False	NA	0	True	AATAAA	-15	NA	104967087	104887070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104932610_104932753_104966901
ES_00039810	chr4	-	2101	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	20	0	20	0	multi-exon	TRUE	canonical	3	276	junction_4	15.561903466677	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536121	106519452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
ES_00039813	chr4	-	2811	2	FSM	ENSMUSG00000028622.12	ENSMUST00000141150.2	2799	2	0	-12	0	1	multi-exon	FALSE	canonical	3	611	junction_1	0	4105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTCTGTGAGATATTAG	NA	False	NA	-7	True	AATAAA	-24	NA	106917147	106913069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_106913302_106914568
ES_00039815	chr4	-	6423	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	0	8	0	-8	multi-exon	FALSE	canonical	3	63	junction_1	11	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAATATTTTTATATCTA	NA	False	NA	NA	False	AATAAA	-9	NA	107035744	106991359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
ES_00039818	chr4	-	1154	1	FSM	ENSMUSG00000082279.2	ENSMUST00000121383.2	1016	1	-4	-134	-4	134	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAGAGCAACTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	107185700	107184546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107184500_107185700
ES_00039819	chr4	-	241	2	Antisense	novelGene_ENSMUSG00000028614.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATCTTTAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	107288622	107222088	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_107222150_107288442
ES_00039821	chr4	-	1913	4	FSM	ENSMUSG00000028610.17	ENSMUST00000069271.5	1861	4	-50	-2	-50	0	multi-exon	FALSE	canonical	3	6	junction_2	4.18993502999218	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGAAAGCTTTTCTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	107541477	107533486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107534267_107536449_107536673_107537842_107538052_107540776
ES_00039822	chr4	-	2987	2	FSM	ENSMUSG00000073779.8	ENSMUST00000097930.2	2991	2	0	4	0	-4	multi-exon	FALSE	canonical	3	6	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACCTGTGTCCCTTATT	NA	False	NA	NA	False	NA	NA	NA	107668145	107663233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107666035_107667959
ES_00039823	chr4	-	347	3	FSM	ENSMUSG00000073779.8	ENSMUST00000150323.2	357	3	10	0	10	0	multi-exon	FALSE	canonical	2	4	junction_1	2	1639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGGGCAGTGGGACCTA	4032	False	NA	NA	False	NA	NA	NA	107680197	107668004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107668144_107673123_107673265_107680130
ES_00039824	chr4	-	2375	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	0	-3	0	3	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTCCTTTTTCCTTATCC	NA	False	NA	3	True	AATAAA	-21	NA	107780807	107761174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
ES_00039825	chr4	-	2649	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	0	-9	0	9	multi-exon	TRUE	canonical	3	305	junction_7	132.795314509043	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACTGTGTATGTTTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	107975729	107901026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ES_00039826	chr4	-	869	8	FSM	ENSMUSG00000028603.16	ENSMUST00000123792.8	855	8	0	-14	0	14	multi-exon	FALSE	canonical	3	321	junction_1	40.7536150894266	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCAGTGCAGCCTGAGG	NA	False	NA	NA	False	ATTAAA	-15	NA	107975592	107948186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ES_00039827	chr4	-	2650	14	FSM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	-141	-226	-15	226	multi-exon	FALSE	canonical	1	26	junction_8	15.5010974988431	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTCTTGAGAAAACAAGAAA	5528	False	NA	NA	False	NA	NA	NA	108075260	108038708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
ES_00039828	chr4	-	8697	14	FSM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	0	-6	0	6	multi-exon	FALSE	canonical	1	32	junction_8	23.507269428335	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTTTCACGTCAGATAC	NA	False	NA	9	True	AATAAA	-27	NA	108158293	108086914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
ES_00039829	chr4	-	604	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	0	-11	0	11	multi-exon	FALSE	canonical	3	46	junction_2	6	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGAATCTCTTTTTTT	NA	False	NA	0	True	AATAAA	-17	NA	108240546	108224962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108225239_108234543_108234684_108240358
ES_00039830	chr4	-	1328	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	-52	13	-52	-13	multi-exon	FALSE	canonical	3	159	junction_2	16.5	1291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGGAAACCTGGGCCAAA	NA	False	NA	-24	True	AATAAA	-27	NA	108264210	108257599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108258195_108260397_108260660_108263739
ES_00039831	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436533	108422066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ES_00039833	chr4	-	3144	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	0	-3	0	3	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGGTTGTTAAATAT	NA	False	NA	0	True	ATTAAA	-17	NA	108690811	108671488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ES_00039834	chr4	-	1033	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102741.8	1033	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_5	414.71464888523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGCTGTCTGCTCAG	NA	False	NA	NA	False	TATAAA	-13	NA	108690761	108673914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690339
ES_00039836	chr4	-	3134	21	FSM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	113.002776514562	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGACTGCAGTTTATTT	NA	False	NA	NA	False	CATAAA	-38	NA	108975219	108918341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ES_00039837	chr4	-	2903	24	FSM	ENSMUSG00000028559.18	ENSMUST00000194478.6	2903	24	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_19	122.628536784985	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAACCTGGCAGCCTTTT	NA	False	NA	34	True	TTTAAA	-38	NA	109059431	108918811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108965077_108965147_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ES_00039838	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975233	108918846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ES_00039840	chr4	-	2381	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	27	0	-9	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGTTACAATTTTGACT	NA	False	NA	2	True	ATTAAA	-29	NA	109059442	108919275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ES_00039844	chr4	-	3793	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	-32	0	-32	0	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTTCCCAAATTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110209138	110060933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ES_00039846	chr4	-	744	2	Genic_Genomic	ENSMUSG00000100514.2_ENSMUSG00000082686.2	novel	1066	1	NA	NA	0	-324	multi-exon	TRUE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCGGCAGGTATGGTG	NA	False	NA	NA	False	NA	NA	NA	111665620	111648141	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_111648172_111664906
ES_00039850	chr4	-	217	2	Antisense	novelGene_ENSMUSG00000083384.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGATATACAACTAAACT	NA	False	NA	NA	False	NA	NA	NA	113293305	113222578	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_113222603_113293112
ES_00039851	chr4	-	3201	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	-31	0	-31	0	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTGGTTCTGATATCTG	NA	False	NA	NA	False	AATAAA	-25	NA	114844469	114816532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ES_00039852	chr4	-	218	2	NNC	ENSMUSG00000047155.14	novel	4187	12	NA	NA	27025	980	at_least_one_novel_splicesite	TRUE	canonical	3	1392	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGCATGGTGGCGCACA	6365	False	NA	NA	False	AAAAAG	-14	NA	114964149	114962539	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_114962705_114964096
ES_00039856	chr4	-	434	4	FSM	ENSMUSG00000063882.13	ENSMUST00000050580.11	402	4	0	-32	0	32	multi-exon	FALSE	canonical	2	5	junction_2	490.539159157214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTTTATTATATTTTA	7697	False	NA	25	True	NA	NA	NA	115932228	115924129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115924370_115927059_115927117_115927933_115927955_115932112
ES_00039857	chr4	-	615	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	-37	1	0	0	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTGTCCTTCCTTTGC	7657	False	NA	-8	True	AATAAA	-16	NA	115932268	115924162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
ES_00039858	chr4	-	579	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	-32	0	32	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTTTATTATATTTTA	7657	False	NA	25	True	NA	NA	NA	115932268	115924129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
ES_00039861	chr4	-	2780	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980882	115954112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
ES_00039862	chr4	-	3358	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	11	637	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCTACATTGATATCC	NA	False	NA	NA	False	NA	NA	NA	115980845	115953475	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
ES_00039863	chr4	-	3025	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980856	115954171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
ES_00039866	chr4	-	545	1	FSM	ENSMUSG00000081459.4	ENSMUST00000121281.2	390	1	-17	-138	-17	138	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACACAGAGAAACTGTGT	NA	False	NA	NA	False	NA	NA	NA	116058166	116057621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116057600_116058200
ES_00039867	chr4	-	5708	29	FSM	ENSMUSG00000003810.14	ENSMUST00000106485.8	5705	29	0	-3	0	2	multi-exon	FALSE	canonical	3	226	junction_2	30.4319246978617	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCCTGTGTTTGCTTCTT	8487	False	NA	0	True	AATACA	-18	NA	116321380	116163956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116165535_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ES_00039868	chr4	-	5726	30	FSM	ENSMUSG00000003810.14	ENSMUST00000106486.8	5723	30	0	-3	0	2	multi-exon	FALSE	canonical	1	2	junction_24	83.2550770091545	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCCTGTGTTTGCTTCTT	8487	False	NA	0	True	AATACA	-18	NA	116321380	116163956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116165532_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116190609_116190631_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ES_00039869	chr4	-	2190	4	NIC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	10	102	intron_retention	TRUE	non_canonical	0	0	junction_1	27.6204433144888	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	-6	True	AATAAA	-27	NA	116413122	116408727	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_116409321_116409518_116410927_116411964_116412101_116413069
ES_00039871	chr4	-	3096	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	448	-564	0	7	3prime_fragment	TRUE	canonical	3	774	junction_12	215.450595691155	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTCTGGAATTATATATG	NA	False	NA	NA	False	AATAAA	-23	NA	116484690	116458241	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ES_00039872	chr4	-	2125	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	0	-7	0	7	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTCTGGAATTATATATG	NA	False	NA	NA	False	AATAAA	-23	NA	116484694	116458241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ES_00039874	chr4	-	1017	5	FSM	ENSMUSG00000028693.16	ENSMUST00000154811.8	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	71.8487995724355	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGGAATGTATTTCT	NA	False	NA	NA	False	GATAAA	-8	NA	116484690	116468663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ES_00039876	chr4	-	1420	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508877	116493706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ES_00039877	chr4	-	2228	8	FSM	ENSMUSG00000028692.15	ENSMUST00000128010.2	2227	8	0	-1	0	0	multi-exon	FALSE	canonical	3	1447	junction_2	89.468042407582	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508593	116493706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ES_00039880	chr4	-	2027	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	16	0	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2047	False	NA	0	True	TTTAAA	-42	NA	116664729	116661198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
ES_00039881	chr4	-	2090	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1939	False	NA	0	True	TTTAAA	-42	NA	116664837	116661198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ES_00039885	chr4	-	224	2	Antisense	novelGene_ENSMUSG00000082841.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAGAGAGATAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	116718646	116704085	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_116704116_116718452
ES_00039886	chr4	-	1495	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	0	-6	0	6	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCTTTGTTCCTTTTGTT	NA	False	NA	-2	True	NA	NA	NA	116851610	116847155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ES_00039887	chr4	-	539	3	FSM	ENSMUSG00000028684.15	ENSMUST00000134598.2	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_2	14	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	116848862	116847413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116847646_116848428_116848691_116848817
ES_00039890	chr4	-	2512	14	FSM	ENSMUSG00000028680.15	ENSMUST00000126135.2	2512	14	0	0	0	0	multi-exon	TRUE	canonical	3	135	junction_9	17.6963206151338	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGGCCTTATCATTCC	3238	False	NA	2	True	AATAAA	-15	NA	116991141	116985851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116986376_116986482_116986597_116987156_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101_116990232_116990385_116990503_116990591_116990700_116990848
ES_00039892	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	2522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	False	NA	-13	True	AATAAA	-30	NA	117013440	117011023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ES_00039894	chr4	-	2842	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	88	True	AATAAA	-17	NA	117039836	117016835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
ES_00039898	chr4	-	1877	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	0	0	junction_5	357.390878451032	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCTGTGTTTGAAGAT	9574	False	NA	NA	False	ATTAAA	-16	NA	117146639	117128658	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146399
ES_00039899	chr4	-	3030	15	FSM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	0	-1	0	1	multi-exon	FALSE	canonical	0	0	junction_5	470.113273367088	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCTGTGTTTGAAGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	117354249	117128658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353879
ES_00039900	chr4	-	1949	11	FSM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	319.717437747771	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9570	False	NA	NA	False	ATTAAA	-6	NA	117146643	117128668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146399
ES_00039901	chr4	-	1954	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	343.341753942045	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGCTGCTGTCTGTGTTTG	9574	False	NA	NA	False	ATTAAA	-11	NA	117146639	117128663	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146395
ES_00039904	chr4	-	2299	2	NNC	ENSMUSG00000028677.20	novel	2630	3	NA	NA	0	1932	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGCCTTGTAAATCC	NA	False	NA	-4	True	AATAAA	-14	NA	117354146	117345499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_117347528_117353875
ES_00039905	chr4	-	1880	8	FSM	ENSMUSG00000009640.12	ENSMUST00000129510.2	1862	8	-10	-8	-10	3	multi-exon	FALSE	canonical	3	226	junction_4	16.5393778724643	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTCCTCACTTCCTCA	NA	False	NA	-32	True	AATAGA	-23	NA	117539190	117531874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
ES_00039906	chr4	-	1761	10	ISM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	31	5	11	0	intron_retention	FALSE	canonical	3	219	junction_4	16.8259059521653	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539439	117531882	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
ES_00039908	chr4	-	1774	10	FSM	ENSMUSG00000009640.12	ENSMUST00000135582.8	1771	10	0	-3	0	3	multi-exon	FALSE	canonical	3	72	junction_9	54.4190416928251	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTCCTCACTTCCTCA	NA	False	NA	-32	True	AATAGA	-23	NA	117539450	117531874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
ES_00039913	chr4	-	2312	8	FSM	ENSMUSG00000028541.15	ENSMUST00000030266.12	2312	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	8.55951553082585	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTGTCTGTCTGTGA	NA	False	NA	-9	True	AGTAAA	-17	NA	117740684	117730327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972_117739015_117740298
ES_00039915	chr4	-	547	5	FSM	ENSMUSG00000033379.14	ENSMUST00000149868.8	547	5	0	0	0	0	multi-exon	FALSE	canonical	3	2536	junction_2	98.4844530877844	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATCGTGGGCAGTGGGG	NA	False	NA	NA	False	GGGGCT	-45	NA	117743755	117742427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472
ES_00039918	chr4	-	2566	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	12	-23	0	23	multi-exon	TRUE	canonical	3	66	junction_1	6.70522184569608	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCAACATGGTGGGTGC	NA	False	NA	NA	False	AATAAA	-36	NA	117749217	117745816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
ES_00039920	chr4	-	3595	20	FSM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_19	11.8213853822033	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTCCTTTCTCTGT	NA	False	NA	0	True	AGTAAA	-19	NA	117772196	117751682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
ES_00039921	chr4	-	2551	12	FSM	ENSMUSG00000028538.13	ENSMUST00000030263.9	2549	12	0	-2	0	2	multi-exon	FALSE	canonical	3	35	junction_11	17.3052325722645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTTGTTTTCTCTGAC	1886	False	NA	1	True	AATAAA	-20	NA	117992087	117789348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991586
ES_00039923	chr4	-	2231	12	FSM	ENSMUSG00000028538.13	ENSMUST00000106410.8	2225	12	0	-6	0	2	multi-exon	FALSE	canonical	3	30	junction_11	18.1899981599189	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTTGTTTTCTCTGAC	1862	False	NA	1	True	AATAAA	-20	NA	117992111	117789348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991930
ES_00039924	chr4	-	2035	7	ISM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	170142	-6	3708	0	3prime_fragment	FALSE	canonical	3	57	junction_3	12.0473602456675	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGTTGTTTTCTCTG	3756	False	NA	-1	True	AATAAA	-18	NA	117821937	117789350	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526
ES_00039926	chr4	-	4569	22	NIC	ENSMUSG00000033326.16	novel	4663	22	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_21	14.8531740730846	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGACTGTGGTCTGCCCC	NA	False	NA	-1	True	AATAAA	-16	NA	118036855	117994153	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118036798
ES_00039927	chr4	-	4658	22	FSM	ENSMUSG00000033326.16	ENSMUST00000106406.9	4663	22	6	-1	6	1	multi-exon	FALSE	canonical	3	48	junction_21	11.6270464270502	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGACTGTGGTCTGCCCCA	NA	False	NA	0	True	AATAAA	-17	NA	118037234	117994152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118037089
ES_00039928	chr4	-	7656	33	FSM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	0	0	0	0	multi-exon	TRUE	canonical	3	357	junction_20	50.8611774834205	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGTCTCAGCTCCTG	NA	False	NA	-2	True	AATAAA	-30	NA	118148602	118065409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682_118088989_118092155_118092301_118092745_118092883_118093109_118093692_118094935_118095206_118106095_118106207_118114685_118114875_118126372_118126515_118126675_118126822_118134545_118134682_118141969_118142050_118148376
ES_00039930	chr4	-	599	3	FSM	ENSMUSG00000033253.19	ENSMUST00000130058.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	1.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTGGTCTCTACCTACC	9523	False	NA	NA	False	NA	NA	NA	118222263	118220603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118220669_118220812_118220882_118221798
ES_00039932	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ES_00039933	chr4	-	526	3	FSM	ENSMUSG00000006398.16	ENSMUST00000151302.2	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1488	junction_2	70.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTGCCCAGAACCAGCT	NA	False	NA	NA	False	NA	NA	NA	118293018	118290744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118290796_118291947_118292074_118292669
ES_00039942	chr4	-	1054	5	FSM	ENSMUSG00000028639.15	ENSMUST00000127737.2	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	4449.11772152637	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATGTCTAGTTTT	NA	False	NA	NA	False	AATAAA	-7	NA	119139989	119135186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119135565_119136130_119136409_119138766_119138850_119139342_119139646_119139977
ES_00039944	chr4	-	768	10	FSM	ENSMUSG00000060288.14	ENSMUST00000056458.14	757	10	0	-11	0	11	multi-exon	TRUE	canonical	2	32	junction_8	169.629516415942	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTATTTGTATTGTTCA	9644	False	NA	8	True	AATAAA	-30	NA	119177681	119157195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119157400_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ES_00039945	chr4	-	1303	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	-15	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTACCTTGTCTAGCCTG	9629	False	NA	-2	True	NA	NA	NA	119177696	119164356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ES_00039948	chr4	-	947	1	FSM	ENSMUSG00000083836.2	ENSMUST00000118722.2	1057	1	-45	155	-45	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCAGTGATGACGTCTTC	NA	False	NA	NA	False	NA	NA	NA	119192687	119191740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119191700_119192700
ES_00039950	chr4	-	4091	5	FSM	ENSMUSG00000048899.9	ENSMUST00000049994.8	4097	5	10	-4	10	4	multi-exon	TRUE	canonical	3	32	junction_2	4.35889894354067	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTATGTCTTGTCTGATT	9983	False	NA	0	True	AATATA	-28	NA	119349815	119322475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119325723_119327663_119327868_119331715_119331803_119334987_119335219_119349493
ES_00039952	chr4	-	2616	2	FSM	ENSMUSG00000052135.9	ENSMUST00000102656.4	2615	2	0	-1	0	1	multi-exon	FALSE	canonical	3	61	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAGCCTTGGGTTAGGAG	NA	False	NA	0	True	AATAAA	-17	NA	120144546	120124274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120126380_120144035
ES_00039953	chr4	-	258	2	Antisense	novelGene_ENSMUSG00000091297.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2279	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGACTCCCAACTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	120457533	120368713	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_120368920_120457481
ES_00039955	chr4	-	2705	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	0	0	0	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427473	120397064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ES_00039957	chr4	-	2006	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	0	-10	0	10	multi-exon	FALSE	canonical	3	95	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGTGTTTGCTGGTC	NA	False	NA	1	True	AATAAA	-32	NA	120782202	120778382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120779894_120781707
ES_00039958	chr4	-	2119	2	FSM	ENSMUSG00000028629.10	ENSMUST00000177880.2	1969	2	-11	-139	1	133	multi-exon	FALSE	canonical	3	24	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACCACAAATTTAAAATAA	NA	False	NA	NA	False	AATAGA	-7	NA	120782213	120778259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120779873_120781707
ES_00039960	chr4	-	2370	6	FSM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	0	-8	0	8	multi-exon	FALSE	canonical	3	8	junction_2	16.2898741554378	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGATTAGTATTTGGG	6836	False	NA	NA	False	NA	NA	NA	120808896	120787325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120788704_120791529_120791629_120792263_120792391_120804485_120804767_120806528_120806758_120808640
ES_00039961	chr4	-	2906	10	FSM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	0	-1	0	1	multi-exon	TRUE	canonical	3	186	junction_3	19.2841007882109	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTCGGCTGTCACTGTGT	NA	False	NA	-1	True	AATAAA	-22	NA	120874444	120825512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120826862_120829086_120829404_120830289_120830456_120831582_120831690_120832568_120832651_120834147_120834235_120839323_120839403_120840303_120840390_120842391_120842526_120873945
ES_00039962	chr4	-	3430	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	-1	0	1	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGGTGTTGGGTTTGAT	NA	False	NA	0	True	ATTAAA	-21	NA	120955438	120916432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ES_00039965	chr4	-	6242	8	FSM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3290569453457	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTACTCATAGAGTCT	6464	False	NA	-1	True	AATAAA	-18	NA	121072281	121003079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_121008220_121012052_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
ES_00039966	chr4	-	265	1	FSM	ENSMUSG00000049878.14	ENSMUST00000222814.2	2752	1	2407	80	2407	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGTGAGTTCCAGAACA	8871	False	NA	NA	False	NA	NA	NA	121069874	121069609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_121069600_121069900
ES_00039967	chr4	-	2737	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779837	122752839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
ES_00039969	chr4	-	2620	13	FSM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_12	208.332399997909	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779704	122752839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779606
ES_00039971	chr4	-	1197	11	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	47035	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	324.931392758533	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	123033723	122973872	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_122973906_123020910_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ES_00039972	chr4	-	1217	11	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	47035	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.931392758533	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	123033744	122973872	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_122973905_123020910_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ES_00039973	chr4	-	1199	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	-11	0	11	multi-exon	FALSE	canonical	3	832	junction_9	90.3078411481501	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGTTGCTGAGAGTTGT	NA	False	NA	-3	True	AATAAA	-36	NA	123033744	123020896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ES_00039977	chr4	-	1917	7	FSM	ENSMUSG00000032726.13	ENSMUST00000102641.10	1917	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3.09569593683445	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAAAAGAACCAT	NA	False	NA	NA	False	NA	NA	NA	123236596	123206437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123207210_123209636_123209748_123210145_123210226_123210654_123210850_123218353_123218503_123218891_123219082_123236176
ES_00039980	chr4	-	2222	7	FSM	ENSMUSG00000028649.22	ENSMUST00000149022.8	2222	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	124.441976662039	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTAATTCTTGGCTT	NA	False	NA	-8	True	ATTAAA	-18	NA	123260242	123243508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123244939_123245614_123245745_123248271_123248374_123248848_123249061_123254702_123254821_123259065_123259141_123260087
ES_00039981	chr4	-	14193	69	NIC	ENSMUSG00000028649.22	novel	17175	90	NA	NA	7104	0	intron_retention	FALSE	canonical	0	0	junction_29	82.1743599459464	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTAATTCTTGGCTT	750	False	NA	-8	True	ATTAAA	-18	NA	123386606	123243508	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437_123278665_123279247_123279480_123280341_123280351_123281020_123281225_123282911_123283131_123284316_123284425_123284843_123284964_123287862_123288070_123288798_123289041_123289705_123289791_123290886_123291214_123291540_123291701_123293135_123293303_123295185_123295357_123295543_123295706_123325790_123327263_123328492_123328989_123332259_123332460_123333233_123333364_123334342_123334585_123335395_123335459_123338627_123338746_123341894_123342052_123343750_123343918_123345825_123346144_123346613_123346823_123348786_123348911_123349150_123349328_123350023_123350543_123351579_123351805_123352946_123353181_123354877_123355028_123373979_123374116_123377439_123377529_123377819_123377973_123380121_123380221_123380459_123380568_123382121_123382206_123383002_123383166_123384380_123384575_123385486_123385626_123386433
ES_00039983	chr4	-	5349	6	FSM	ENSMUSG00000028649.22	ENSMUST00000125447.3	5597	6	248	0	248	0	multi-exon	FALSE	canonical	3	12	junction_5	40.1566930909406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCGGTGCTGTCGGA	NA	False	NA	NA	False	NA	NA	NA	123305773	123291067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123291214_123291540_123291701_123293135_123293303_123295185_123295357_123295543_123295706_123301230
ES_00039989	chr4	-	680	2	FSM	ENSMUSG00000028648.14	ENSMUST00000106207.8	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	2108	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	3708	False	NA	-25	True	AATAAA	-17	NA	123610119	123606502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123606720_123609656
ES_00039990	chr4	-	599	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1848	False	NA	-25	True	AATAAA	-17	NA	123611979	123606502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123606720_123609656_123609875_123611815
ES_00039991	chr4	-	528	3	FSM	ENSMUSG00000028648.14	ENSMUST00000030401.14	525	3	-5	2	-5	-2	multi-exon	FALSE	canonical	3	1318	junction_2	395	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTCTGTTTGCTTTTGGGT	1827	False	NA	-27	True	AATAAA	-15	NA	123612000	123606504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123606720_123609656_123609875_123611905
ES_00039993	chr4	-	3052	5	FSM	ENSMUSG00000023075.10	ENSMUST00000102636.4	3052	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	40.3198152277512	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATGCATTGGAATGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123644138	123628351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123630658_123631801_123631874_123632935_123633071_123637225_123637367_123643740
ES_00039994	chr4	-	1486	1	Genic_Genomic	ENSMUSG00000054304.4	novel	NA	NA	NA	NA	-30	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTACTTGCTCTCTCGC	NA	False	NA	NA	False	NA	NA	NA	123797457	123795971	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_123796000_123797500
ES_00039995	chr4	-	490	1	FSM	ENSMUSG00000085875.4	ENSMUST00000163208.2	279	1	155	-366	155	198	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTCCGGGCAGTCTCGCG	NA	False	NA	NA	False	NA	NA	NA	123799146	123798656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123798700_123799100
ES_00039996	chr4	-	755	3	Intergenic	novelGene_2891	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	73	junction_1	3	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAGAGAAAGCAGGGCA	NA	False	NA	NA	False	NA	NA	NA	124252259	124246852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_124247180_124247850_124247996_124251976
ES_00039999	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	False	NA	NA	False	TATAAA	-16	NA	124587393	124571952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ES_00040000	chr4	-	1251	1	FSM	ENSMUSG00000078570.11	ENSMUST00000184704.2	1251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCAAATAAAACTATTTG	8055	False	NA	NA	False	AATAAA	-17	NA	124744123	124742872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124742900_124744100
ES_00040001	chr4	-	762	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	0	-1	0	0	multi-exon	FALSE	canonical	3	59	junction_2	71	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7724	False	NA	-2	True	ATTAAA	-21	NA	124744454	124743277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124743756_124744024_124744227_124744372
ES_00040002	chr4	-	1228	3	FSM	ENSMUSG00000078570.11	ENSMUST00000185036.2	1223	3	0	-5	0	0	multi-exon	FALSE	canonical	3	65	junction_2	68	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7189	False	NA	-2	True	ATTAAA	-21	NA	124744989	124743277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124743756_124744024_124744227_124744441
ES_00040003	chr4	-	1597	2	FSM	ENSMUSG00000078570.11	ENSMUST00000137769.3	659	2	-1330	392	-607	-392	multi-exon	FALSE	canonical	3	201	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCCAGCCATCTGTATCG	6582	False	NA	NA	False	NA	NA	NA	124745596	124743730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124743756_124744024
ES_00040004	chr4	-	968	3	FSM	ENSMUSG00000078570.11	ENSMUST00000106190.10	968	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	88.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7576	False	NA	-2	True	ATTAAA	-21	NA	124744602	124743277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124743756_124744024_124744227_124744314
ES_00040009	chr4	-	1636	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	0	-10	0	10	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCATTCACTCTGGTT	NA	False	NA	0	True	AATAAA	-36	NA	124830710	124812247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ES_00040010	chr4	-	2818	6	FSM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	-66	3	-66	-3	multi-exon	FALSE	canonical	2	13	junction_5	0.748331477354788	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTATTGCCAGTCGTTT	NA	False	NA	NA	False	AAGAAA	-4	NA	125021699	125012218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125020398_125020876_125021559
ES_00040011	chr4	-	573	2	FSM	ENSMUSG00000085562.8	ENSMUST00000144539.2	573	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTAGCTGGCTCCTCATC	NA	False	NA	NA	False	NA	NA	NA	125816210	125812367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_125812600_125815869
ES_00040012	chr4	-	225	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	2	166	2	-166	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAATGCTCGGGCTACCC	NA	False	NA	NA	False	NA	NA	NA	125964050	125963825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_125963800_125964000
ES_00040013	chr4	-	4438	13	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-35	16792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.28978693347	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTGCAGAGGTCAGAGG	6729	False	NA	NA	False	NA	NA	NA	126096498	126041082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126041110_126057874_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ES_00040014	chr4	-	1835	12	FSM	ENSMUSG00000073758.11	ENSMUST00000094760.9	1859	12	25	-1	0	1	multi-exon	FALSE	canonical	2	5	junction_2	4.41260403618604	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGTCTGGTCCTTGTGGG	2028	False	NA	1	True	AGTAAA	-22	NA	126056394	126044393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126056245
ES_00040015	chr4	-	2365	16	FSM	ENSMUSG00000073758.11	ENSMUST00000097891.4	2384	16	20	-1	20	1	multi-exon	FALSE	canonical	2	5	junction_2	4.1505019776729	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGTCTGGTCCTTGTGGG	1158	False	NA	1	True	AGTAAA	-22	NA	126057264	126044393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126055968_126056060_126056245_126056365_126056594_126056659_126056758_126056917_126057017
ES_00040016	chr4	-	2668	9	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_7	294.331764340854	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6785	False	NA	-3	True	AATAAA	-28	NA	126096442	126057874	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126080227_126080382_126096362
ES_00040018	chr4	-	3665	11	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	42	junction_7	255.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6779	False	NA	-3	True	AATAAA	-28	NA	126096448	126057874	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ES_00040019	chr4	-	4378	11	FSM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_10	137.634443363571	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6674	False	NA	-3	True	AATAAA	-28	NA	126096553	126057874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
ES_00040020	chr4	-	3809	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	68	junction_7	237.221554913761	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACGGACTGTGTTTGTT	6813	False	NA	-8	True	AATAAA	-23	NA	126096414	126057879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ES_00040023	chr4	-	2744	7	FSM	ENSMUSG00000043962.17	ENSMUST00000106142.8	2744	7	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	159.124078071869	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTATTGACCATCATT	6845	False	NA	NA	False	AATAAA	-23	NA	126096382	126066635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
ES_00040027	chr4	-	3416	18	NNC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	9	2517	intron_retention	FALSE	non_canonical	0	0	junction_1	82.1611632549396	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCTTGCTATGAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	126150127	126123442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126123471_126125964_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ES_00040028	chr4	-	1153	2	ISM	ENSMUSG00000028849.18	ENSMUST00000137382.2	374	3	115	-796	115	0	intron_retention	FALSE	canonical	3	299	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126127226	126125959	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_126126855_126126968
ES_00040032	chr4	-	3351	17	FSM	ENSMUSG00000028849.18	ENSMUST00000061143.15	3351	17	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_12	56.4079726191254	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150076	126125959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ES_00040034	chr4	-	1675	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	0	-3	0	3	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTTCCTGTCTCCAC	7076	False	NA	NA	False	AATAAA	-23	NA	126215496	126209836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
ES_00040036	chr4	-	626	4	FSM	ENSMUSG00000028842.16	ENSMUST00000151179.8	625	4	0	-1	0	1	multi-exon	FALSE	canonical	3	18	junction_2	5.24933858267454	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTGTCCTTTCATAAT	3021	False	NA	NA	False	ATTAAA	-19	NA	126298087	126269469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126269734_126270699_126270835_126296957_126297095_126297997
ES_00040038	chr4	-	367	1	FSM	ENSMUSG00000084099.2	ENSMUST00000122406.2	370	1	3	0	3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACCAAGTGATCATAGG	NA	False	NA	NA	False	NA	NA	NA	126370461	126370094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126370100_126370500
ES_00040039	chr4	-	762	1	FSM	ENSMUSG00000082381.2	ENSMUST00000117115.2	573	1	-200	11	-200	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCCATACAACATGAAGA	NA	False	NA	NA	False	NA	NA	NA	126371292	126370530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126370500_126371300
ES_00040043	chr4	-	2375	7	FSM	ENSMUSG00000028833.14	ENSMUST00000127079.2	2375	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	61.3969326052477	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCAGCTTTCTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	126647231	126638523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126647117
ES_00040044	chr4	-	7197	30	NNC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	-98	0	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_15	36.0808643919119	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGAGTTCTTTTTCTTT	NA	False	NA	-10	True	AATAAA	-20	NA	126862026	126755731	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794539_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
ES_00040045	chr4	-	7037	30	NNC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	71	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_29	59.7058783905541	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGAGTTCTTTTTCTTT	NA	False	NA	-10	True	AATAAA	-20	NA	126861857	126755731	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794539_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861599
ES_00040046	chr4	-	7102	30	FSM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_15	43.6375461501576	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGAGTTCTTTTTCTTT	NA	False	NA	-10	True	AATAAA	-20	NA	126861928	126755731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794542_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
ES_00040047	chr4	-	6914	29	NIC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	71	-5	combination_of_known_splicesites	FALSE	canonical	3	20	junction_3	63.1534715545215	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGGGTGAGTTCTTTT	NA	False	NA	-15	True	AATAAA	-15	NA	126861857	126755736	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126758111_126759289_126759420_126762509_126762759_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794542_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
ES_00040051	chr4	-	5975	3	FSM	ENSMUSG00000042446.17	ENSMUST00000129028.2	522	3	-614	-4839	-614	-3048	multi-exon	FALSE	canonical	3	222	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGTTCATTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	126819968	126811788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126817028_126817361_126817424_126819294
ES_00040052	chr4	-	3852	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAGAGGCCTAACT	NA	False	NA	NA	False	ACTAAA	-36	NA	126954945	126940886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ES_00040055	chr4	-	1689	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	0	-4	0	4	multi-exon	FALSE	canonical	3	11	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCACTGATGTTGTCA	NA	False	NA	4	True	AATAAA	-21	NA	127207832	127205209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_127206779_127207712
ES_00040056	chr4	-	1643	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	0	-20	0	20	multi-exon	FALSE	canonical	3	984	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAACTTTCACAACTC	NA	False	NA	15	True	AATAAA	-37	NA	127222954	127219007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_127220565_127222868
ES_00040059	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	4504	False	NA	-10	True	AATAAA	-17	NA	127247874	127244878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_127246275_127247825
ES_00040060	chr4	-	1723	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	-2	0	2	multi-exon	FALSE	canonical	3	573	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGAGGGGCCCTTCCTTGG	404	False	NA	NA	False	AATAAA	-18	NA	127251974	127248599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_127250167_127251818
ES_00040065	chr4	-	2063	11	FSM	ENSMUSG00000028789.17	ENSMUST00000030581.10	2063	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	8.67698104181403	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAACCCTTCAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	128856232	128825814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155_128855353_128855876_128855998_128856093
ES_00040066	chr4	-	1116	3	FSM	ENSMUSG00000028789.17	ENSMUST00000156739.2	1104	3	0	-12	0	12	multi-exon	FALSE	canonical	0	0	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGATCCAAGCCCTTTCA	NA	False	NA	NA	False	ATTAAA	-32	NA	128856221	128854485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_128855353_128855876_128855998_128856093
ES_00040067	chr4	-	1001	2	FSM	ENSMUSG00000085085.3	ENSMUST00000149472.3	1009	2	18	-10	18	10	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTACACTTCTTGGCTC	NA	False	NA	-8	True	AATAAA	-26	NA	128951758	128943879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_128944703_128951580
ES_00040069	chr4	-	4470	7	FSM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	-35	-9	0	9	multi-exon	FALSE	canonical	3	32	junction_6	60.2301142840246	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCCGTCTGTTCCGGG	1153	False	NA	4	True	AATAAA	-24	NA	129083370	129041788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083164
ES_00040071	chr4	-	4324	7	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	9	10	intron_retention	FALSE	canonical	3	119	junction_6	30.1482448355898	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCCGTCTGTTCCGGGC	1130	False	NA	5	True	AATAAA	-25	NA	129083393	129041787	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083334
ES_00040072	chr4	-	4255	8	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	6	3	intron_retention	FALSE	canonical	3	49	junction_5	52.6272995037863	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTACTGTGGCCGTCTGT	1066	False	NA	-2	True	AATAAA	-18	NA	129083457	129041794	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129076326_129077393_129077511_129083334
ES_00040073	chr4	-	4036	9	FSM	ENSMUSG00000040928.16	ENSMUST00000106059.8	4084	9	57	-9	0	9	multi-exon	FALSE	canonical	3	25	junction_6	66.0793793478722	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCCGTCTGTTCCGGG	1060	False	NA	4	True	AATAAA	-24	NA	129083463	129041788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076124_129076326_129077393_129077511_129083334
ES_00040075	chr4	-	5034	7	FSM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	15	0	15	0	multi-exon	FALSE	canonical	3	23	junction_6	86.8210164009204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGCTGTTTTCCA	390	False	NA	0	True	ATTAAA	-28	NA	129121689	129113370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129121519
ES_00040077	chr4	-	5187	7	FSM	ENSMUSG00000050390.13	ENSMUST00000052602.6	5187	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	42.0713679359253	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGCTGTTTTCCA	NA	False	NA	0	True	ATTAAA	-28	NA	129142236	129113370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129141913
ES_00040079	chr4	-	722	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	3218	False	NA	-29	True	AATAAA	-14	NA	129228437	129203309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
ES_00040080	chr4	-	2330	6	NNC	ENSMUSG00000028807.3	novel	2321	5	NA	NA	-32	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	57.4128905386238	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271941	129247420	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129247677_129247699_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
ES_00040082	chr4	-	2780	4	FSM	ENSMUSG00000048485.13	ENSMUST00000053042.6	3288	4	3	505	3	-1	multi-exon	FALSE	canonical	2	5	junction_2	3.09120616516523	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTGCTTGTATTTT	742	False	NA	-1	True	ATTAAA	-14	NA	129334608	129320062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129321621_129322220_129322400_129326103_129327105_129334566
ES_00040084	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8808	False	NA	-5	True	AATAAA	-22	NA	129436506	129409896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ES_00040089	chr4	-	1624	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1814	0	-99	0	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACTGCATACTTTATTT	NA	False	NA	5	True	NA	NA	NA	129450351	129442136	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
ES_00040090	chr4	-	2074	13	FSM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	0	0	0	0	multi-exon	TRUE	canonical	3	4	junction_12	60.4484973620795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACTGCATACTTTATTT	NA	False	NA	5	True	NA	NA	NA	129452165	129442136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873_129451984_129452080
ES_00040091	chr4	-	2190	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	0	-5	0	0	multi-exon	FALSE	canonical	3	10	junction_9	59.1335510476424	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACTGCATACTTTATTT	NA	False	NA	5	True	NA	NA	NA	129452184	129442136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
ES_00040094	chr4	-	734	6	FSM	ENSMUSG00000028798.17	ENSMUST00000135055.8	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_5	43.9881802306029	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCTCACTGCCCTCCT	6426	False	NA	NA	False	NA	NA	NA	129494392	129487318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
ES_00040097	chr4	-	2639	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	14.396180048888	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	False	NA	NA	False	NA	NA	NA	129512892	129508918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ES_00040098	chr4	-	1739	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	35.7960891718635	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	False	NA	NA	False	NA	NA	NA	129512865	129508918	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ES_00040100	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	58	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	129512889	129511891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129512156_129512284_129512429_129512806
ES_00040104	chr4	-	842	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	37	0	-11	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	129517703	129513066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
ES_00040106	chr4	-	6864	9	FSM	ENSMUSG00000053841.16	ENSMUST00000142577.2	4918	9	-86	-1860	79	1855	multi-exon	FALSE	canonical	3	289	junction_1	26.4007575648882	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCGCCCCTCATTTTCCC	8199	False	NA	24	True	NA	NA	NA	129534519	129518015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048
ES_00040107	chr4	-	6891	10	FSM	ENSMUSG00000053841.16	ENSMUST00000084264.12	4847	10	-134	-1910	20	1905	multi-exon	FALSE	canonical	3	289	junction_1	24.9225962224873	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTTAGCCCCATCATTT	7986	False	NA	74	True	NA	NA	NA	129534732	129517965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048
ES_00040108	chr4	-	4569	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAGCCAATCGAATTAT	7860	False	NA	-5	True	ATTAAA	-22	NA	129534858	129519870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
ES_00040110	chr4	-	5710	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_4	15.2943505832485	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTCTTTGGTTTGGAG	8834	False	NA	3	True	AATAAA	-22	NA	129566560	129537772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
ES_00040111	chr4	-	1857	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	0	-6	0	6	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGTGATTCTTTCT	10001	False	NA	NA	False	AAAAAG	-27	NA	129590589	129570141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
ES_00040112	chr4	-	1816	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	0	-6	0	6	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGTGATTCTTTCT	9992	False	NA	NA	False	AAAAAG	-27	NA	129590631	129570141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
ES_00040113	chr4	-	3641	9	FSM	ENSMUSG00000028790.14	ENSMUST00000066257.6	3738	9	0	97	0	-97	multi-exon	FALSE	canonical	3	582	junction_8	66.0235516690825	4104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATATAAACGGTGACAG	4981	False	NA	NA	False	AAAAAG	-45	NA	129636089	129607708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571
ES_00040114	chr4	-	203	1	Intergenic	novelGene_2933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGGAGAGAGGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	129704536	129704333	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_129704300_129704500
ES_00040115	chr4	-	1956	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	0	-4	0	4	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGGAGTCTTCAAGGT	NA	False	NA	NA	False	AATAAA	-23	NA	130068595	130059390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
ES_00040116	chr4	-	316	2	FSM	ENSMUSG00000023120.10	ENSMUST00000124528.2	335	2	0	19	0	-19	multi-exon	FALSE	canonical	2	2	junction_1	0	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTGTACTTAGATGCA	NA	False	NA	NA	False	AATACA	-25	NA	130103649	130102920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_130103210_130103622
ES_00040117	chr4	-	243	2	Intergenic	novelGene_2937	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATCAGCAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	130184168	130130127	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_130130156_130183953
ES_00040118	chr4	-	1874	10	FSM	ENSMUSG00000023232.18	ENSMUST00000105996.8	1878	10	2	2	2	-2	multi-exon	FALSE	canonical	2	4	junction_9	3.01027048536535	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCTCCCATGTCTTG	7798	False	NA	-3	True	AATAAA	-15	NA	130169377	130147289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130169250
ES_00040119	chr4	-	1892	6	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	6	-9	combination_of_known_splicesites	FALSE	canonical	3	25	junction_5	110.937099295051	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTAGGAACTGGGTCCA	NA	False	NA	NA	False	AATAAA	-8	NA	130253703	130209184	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130253668
ES_00040120	chr4	-	2113	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGGTCCAGGCTGATGC	NA	False	NA	NA	False	AATAAA	-17	NA	130253736	130209175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ES_00040121	chr4	-	939	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-22	174	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCACAGGGCCCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	130253758	130210313	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
ES_00040124	chr4	-	467	4	FSM	ENSMUSG00000028909.18	ENSMUST00000139641.2	599	4	132	0	132	0	multi-exon	TRUE	canonical	2	3	junction_1	0	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGAGCTCAGGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	131530799	131527050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131527103_131529838_131529942_131530253_131530456_131530689
ES_00040127	chr4	-	5157	18	FSM	ENSMUSG00000028906.18	ENSMUST00000084253.10	5141	18	0	-16	0	0	multi-exon	FALSE	canonical	3	49	junction_17	28.8854077694417	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	131776389	131650723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
ES_00040129	chr4	-	5135	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	31.5274229054918	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGACTGTGAGGATTGA	5310	False	NA	NA	False	AATAAA	-20	NA	131802631	131650724	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ES_00040130	chr4	-	5663	19	NIC	ENSMUSG00000028906.18	novel	5141	18	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	34.7035060668707	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	131776445	131650723	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
ES_00040131	chr4	-	5585	20	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	36.2164162896367	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGACTGTGAGGATTG	5309	False	NA	NA	False	AATAAA	-19	NA	131802632	131650725	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ES_00040133	chr4	-	3941	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	212	-24	0	24	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACTTGAGTTATGAGCT	NA	False	NA	NA	False	ATTAAA	-43	NA	131939402	131912198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
ES_00040134	chr4	-	2844	4	FSM	ENSMUSG00000040025.18	ENSMUST00000102570.5	2536	4	-308	0	-110	0	multi-exon	FALSE	canonical	3	871	junction_2	49.2815043060443	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGGAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	131939724	131914060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742
ES_00040135	chr4	-	522	1	FSM	ENSMUSG00000083757.3	ENSMUST00000229086.2	502	1	22	-42	22	42	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCCTAAAAAGCCATAGTT	9934	False	NA	NA	False	NA	NA	NA	131947778	131947256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131947300_131947800
ES_00040136	chr4	-	5619	10	FSM	ENSMUSG00000028901.14	ENSMUST00000168553.8	6523	10	1	903	1	-903	multi-exon	FALSE	canonical	2	7	junction_9	19.114340812368	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACCCAAAGTTACTCTA	2924	False	NA	NA	False	NA	NA	NA	131979804	131949238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741
ES_00040137	chr4	-	4632	11	FSM	ENSMUSG00000028901.14	ENSMUST00000105965.8	4632	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	24.0074988284911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACGCCAACTGATTGCG	1993	False	NA	NA	False	AATAAA	-30	NA	131988832	131950256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741_131979805_131988801
ES_00040138	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1912	False	NA	-58	True	NA	NA	NA	131988913	131952981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
ES_00040142	chr4	-	371	3	FSM	ENSMUSG00000028898.16	ENSMUST00000105960.3	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	246.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCCTTACCTGCTGTT	2316	False	NA	NA	False	NA	NA	NA	132056849	132048989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132049122_132052518_132052572_132056663
ES_00040144	chr4	-	2294	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	0	-9	0	9	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCGTGTCCATGGAGTTG	5439	False	NA	-1	True	AATAAA	-30	NA	132073058	132059220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
ES_00040145	chr4	-	2278	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5481	False	NA	-14	True	AATAAA	-17	NA	132073016	132059233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
ES_00040149	chr4	-	447	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	0	-10	0	10	multi-exon	FALSE	canonical	3	959	junction_1	21	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGTGTGTGTGTGAGC	NA	False	NA	1	True	ATTAAA	-25	NA	132080997	132079233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132079555_132079973_132080010_132080907
ES_00040152	chr4	-	4491	13	FSM	ENSMUSG00000066043.14	ENSMUST00000084170.12	4483	13	0	-8	0	1	multi-exon	FALSE	canonical	3	61	junction_10	11.8591268181468	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTGTTACTTTTTA	NA	False	NA	NA	False	ATTAAA	-24	NA	132149757	132083232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
ES_00040153	chr4	-	4595	14	FSM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	10	9	10	-2	multi-exon	FALSE	canonical	2	21	junction_11	24.1391430016078	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAAACTGAATTTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	132149790	132083242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132110592_132110674_132114202_132114377_132140380_132140435_132149655
ES_00040154	chr4	-	1700	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	-25	0	-25	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1022	False	NA	-15	True	AATAAA	-13	NA	132191257	132186041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132187425_132190175_132190320_132191084
ES_00040155	chr4	-	518	4	NNC	ENSMUSG00000054428.13	novel	539	3	NA	NA	0	48200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3850.34996966365	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAACAAAACAAATA	9305	False	NA	NA	False	NA	NA	NA	132260906	132209665	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132209711_132257867_132258135_132260606_132260699_132260792
ES_00040156	chr4	-	3486	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	0	-11	0	11	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATGTTTGTCCATTTCC	NA	False	NA	-20	True	AATAAA	-33	NA	132237812	132219331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
ES_00040158	chr4	-	484	2	FSM	ENSMUSG00000054428.13	ENSMUST00000152993.8	462	2	0	-22	0	22	multi-exon	FALSE	canonical	3	8437	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCAGTTCTCAACCTTT	9412	False	NA	2	True	AATAAA	-41	NA	132260799	132257843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132258135_132260606
ES_00040159	chr4	-	539	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_2	284	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9241	False	NA	-20	True	AATAAA	-19	NA	132260970	132257865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132258135_132260606_132260699_132260792
ES_00040161	chr4	-	4241	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	-8	12	-8	-12	multi-exon	FALSE	canonical	3	48	junction_1	6.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGCAAACTTACAATTGTT	4036	False	NA	NA	False	AATAAA	-8	NA	132459865	132452219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132455882_132458186_132458384_132459483
ES_00040164	chr4	-	345	2	Intergenic	novelGene_2952	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACAGCTC	4374	False	NA	NA	False	NA	NA	NA	132531057	132520908	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_132521071_132530874
ES_00040165	chr4	-	2040	7	NIC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	199	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	60.1165534607565	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570235	132554239	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570119
ES_00040167	chr4	-	651	3	FSM	ENSMUSG00000028882.14	ENSMUST00000156777.2	694	3	0	43	0	-43	multi-exon	FALSE	canonical	3	171	junction_2	4.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGCCCTCTTCTCCCAG	7210	False	NA	NA	False	NA	NA	NA	132560286	132556321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132556749_132557935_132558081_132560207
ES_00040169	chr4	-	3020	10	NNC	ENSMUSG00000028878.12	novel	3053	9	NA	NA	0	28501	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	41.0891833412922	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTTCCAGAAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	132649804	132598022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132598057_132626525_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ES_00040171	chr4	-	3053	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132649869	132626523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ES_00040172	chr4	-	1863	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGATCTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	132649804	132627561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ES_00040175	chr4	-	1482	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	2	0	2	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005101	132993355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
ES_00040179	chr4	-	4217	17	NNC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_16	145.862520888678	148	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGGTGGCATTTG	8378	False	NA	-6	True	ATTAAA	-15	NA	133080801	133019776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029136_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096_133080261_133080600
ES_00040181	chr4	-	4189	17	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	24	-5	combination_of_known_junctions	FALSE	canonical	3	60	junction_16	112.020575676971	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACTGGTGGCATTTGTT	8411	False	NA	-4	True	ATTAAA	-17	NA	133080768	133019774	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096_133080261_133080600
ES_00040182	chr4	-	1637	2	FSM	ENSMUSG00000056596.9	ENSMUST00000125541.2	1654	2	15	2	15	-2	multi-exon	FALSE	canonical	3	7	junction_1	0	401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAGACGTGTGGTTTTAA	NA	False	NA	-6	True	AATAAA	-16	NA	133225846	133218412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133219142_133224938
ES_00040183	chr4	-	1325	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	0	-9	0	9	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTCTAGACCCTCTGTGG	4460	False	NA	NA	False	ATTAAA	-28	NA	133273307	133259843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
ES_00040184	chr4	-	1278	8	NNC	ENSMUSG00000028851.7	novel	1316	8	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	291	junction_6	1233.6345835434	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTGTCCCTCGTCTAG	4463	False	NA	NA	False	ATTAAA	-17	NA	133273304	133259854	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263150_133268449_133268528_133273115
ES_00040185	chr4	-	1467	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	146	0	146	0	mono-exon	FALSE	NA	NA	NA	NA	NA	463	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTTCAGTTATTGGC	9975	False	NA	-10	True	AATAAA	-18	NA	133329333	133327866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133327900_133329300
ES_00040186	chr4	-	4577	8	FSM	ENSMUSG00000037553.15	ENSMUST00000084238.5	4580	8	0	3	0	-3	multi-exon	FALSE	canonical	3	285	junction_4	22.238961949053	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGGAGTGTTTGAGCCA	NA	False	NA	NA	False	AATAAA	-25	NA	133360780	133332612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133336085_133337680_133337794_133340233_133340337_133340949_133340999_133341111_133341250_133342490_133342641_133354510_133354672_133360389
ES_00040189	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	36	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133390103_133397048_133397172_133399629
ES_00040192	chr4	-	7202	20	NIC	ENSMUSG00000007880.17	novel	8187	20	NA	NA	-78	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	40.3589846927467	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTTTATTTTCAAATT	NA	False	NA	6	True	AATAAA	-32	NA	133481371	133406307	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226_133423468_133446847_133446965_133447860_133448311_133450149_133450363_133481224
ES_00040193	chr4	-	3141	22	FSM	ENSMUSG00000003644.18	ENSMUST00000105894.11	3135	22	0	-6	0	6	multi-exon	FALSE	canonical	3	996	junction_6	97.2257582771271	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCCTTCTGCTCTTTA	7964	False	NA	1	True	AATAAA	-24	NA	133615108	133574594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
ES_00040194	chr4	-	3085	22	FSM	ENSMUSG00000003644.18	ENSMUST00000003741.16	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_13	262.602024229159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	7977	False	NA	-9	True	AATAAA	-14	NA	133615095	133574604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592710_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
ES_00040196	chr4	-	2296	21	FSM	ENSMUSG00000003644.18	ENSMUST00000137486.3	2296	21	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_20	252.994486105923	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCAGACGAACTCCTCAG	1548	False	NA	NA	False	NA	NA	NA	133600350	133575362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133600154
ES_00040200	chr4	-	1262	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	0	3	0	-3	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGCCTCTGATCTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	133695312	133692051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ES_00040201	chr4	-	973	6	FSM	ENSMUSG00000003038.16	ENSMUST00000105893.8	973	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	1060.38683507482	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAGTTGTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	133694752	133692300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133694585
ES_00040202	chr4	-	881	6	FSM	ENSMUSG00000003038.16	ENSMUST00000100472.10	881	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	1086.09951661899	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTCTGCCTAAAAGTCA	NA	False	NA	NA	False	TATAAA	-22	NA	133695204	133692330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694070_133694107_133694267_133694313_133695105
ES_00040205	chr4	-	3150	9	FSM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	0	-17	0	-12	multi-exon	FALSE	canonical	1	2	junction_8	23.2025725944344	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAACTGCAAACGAGAGAA	NA	False	NA	NA	False	AAAAAG	-38	NA	133728198	133696350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727651_133728035
ES_00040212	chr4	-	518	2	FSM	ENSMUSG00000028843.9	ENSMUST00000105879.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGACTGCTTGTGGTGT	9276	False	NA	-12	True	ATTAAA	-15	NA	133856050	133854723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133855118_133855926
ES_00040213	chr4	-	3886	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	6	1	6	-1	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGGTTTCCTAGTGCCT	NA	False	NA	NA	False	AATAAA	-14	NA	133914417	133857169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
ES_00040216	chr4	-	4518	3	FSM	ENSMUSG00000050890.16	ENSMUST00000105876.9	4509	3	0	-9	0	8	multi-exon	FALSE	canonical	3	58	junction_1	10	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCTTGCTACTTTGAGT	4291	False	NA	NA	False	AATAAA	-27	NA	134014564	134002304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134006428_134011556_134011859_134014471
ES_00040217	chr4	-	4673	3	FSM	ENSMUSG00000050890.16	ENSMUST00000061234.14	4686	3	14	-1	14	1	multi-exon	FALSE	canonical	3	10	junction_2	24	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGTTCTCTTGCTAC	3663	False	NA	NA	False	AATAAA	-20	NA	134015192	134002311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134006428_134011556_134011859_134014937
ES_00040218	chr4	-	4126	11	FSM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.57951365983839	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGGCTATAAATACGCT	7023	False	NA	0	True	AATAAA	-23	NA	134099869	134083682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
ES_00040220	chr4	-	2263	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	10	-248	0	248	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACATTTCTTAGGTTGGA	NA	False	NA	NA	False	NA	NA	NA	134262569	134252612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
ES_00040221	chr4	-	2921	7	NNC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	0	1013	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	178.015604809117	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTGTGTCTGGTGCTTG	NA	False	NA	NA	False	TTTAAA	-45	NA	134262569	134251847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262499
ES_00040222	chr4	-	2927	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	62	-1020	-27	1013	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTGTGTCTGGTGCTTG	NA	False	NA	NA	False	TTTAAA	-45	NA	134262636	134251847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
ES_00040223	chr4	-	4085	5	FSM	ENSMUSG00000046671.19	ENSMUST00000130187.8	4085	5	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_3	19.4036079119323	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATTTAGGGCGGTG	NA	False	NA	NA	False	TATAAA	-40	NA	134262569	134255695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937
ES_00040224	chr4	-	3476	12	FSM	ENSMUSG00000050989.11	ENSMUST00000060435.8	3445	12	-29	-2	-29	2	multi-exon	FALSE	canonical	3	9	junction_3	3.13603423830188	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGCTTTTCCTTTGAGC	8340	False	NA	3	True	AATAAA	-21	NA	134279506	134265200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134267101_134267944_134268047_134268133_134268247_134269647_134269754_134270023_134270213_134270360_134270443_134271895_134272034_134272499_134272625_134272791_134273002_134275261_134275396_134278727_134278846_134279247
ES_00040229	chr4	-	3817	12	NNC	ENSMUSG00000028826.15	novel	3826	11	NA	NA	-602	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_11	55.9266047956332	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCCTGCCTTTTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	134581258	134530069	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134565159_134565302_134580348_134580605_134581215
ES_00040235	chr4	-	4119	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	135000125	134941279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ES_00040236	chr4	-	3781	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	35	-19	35	19	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCAGGGGAGGACGGAG	NA	False	NA	19	True	AATAAA	-38	NA	135080597	135047775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ES_00040237	chr4	-	3759	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_5	295.204790801421	225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACTCACATTTATTCG	NA	False	NA	0	True	AATAAA	-19	NA	135080555	135047794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054532_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ES_00040238	chr4	-	3152	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTTGACTATTGTTGG	NA	False	NA	-16	True	TTTAAA	-4	NA	135080555	135048404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ES_00040241	chr4	-	2805	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_9	458.763970493365	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCACACCGCCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	135080445	135049600	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059116_135059468_135059550_135065114_135065387_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
ES_00040242	chr4	-	4542	16	FSM	ENSMUSG00000028809.17	ENSMUST00000150619.9	4542	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_10	331.446660699559	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAGAAGAAGAAGAA	NA	False	NA	-69	True	NA	NA	NA	135080445	135049786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067916_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135074169_135074425_135074516_135080407
ES_00040249	chr4	-	1073	4	FSM	ENSMUSG00000028809.17	ENSMUST00000134019.2	1073	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	538.059063259375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAACATGGGAGGATGT	NA	False	NA	NA	False	AAGAAA	-42	NA	135080513	135073002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135073757_135074045_135074169_135074425_135074516_135080407
ES_00040250	chr4	-	1739	5	NIC	ENSMUSG00000043924.17	novel	2000	6	NA	NA	59	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	5.8309518948453	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5788	False	NA	0	True	ATTAAA	-17	NA	135125442	135096886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135125193
ES_00040252	chr4	-	585	4	FSM	ENSMUSG00000059713.13	ENSMUST00000132654.8	583	4	0	-2	0	2	multi-exon	FALSE	canonical	3	30	junction_1	31.8224239596337	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGAGCAGTCTCTTCAG	NA	False	NA	-2	True	AATAAA	-24	NA	135152578	135139616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524
ES_00040253	chr4	-	5085	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.0078105935821	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCTCTTCAGTGTAT	NA	False	NA	3	True	AATAAA	-29	NA	135161134	135139611	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152754_135160922
ES_00040254	chr4	-	5149	5	FSM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	-31	-7	-31	7	multi-exon	FALSE	canonical	3	12	junction_4	34.9311823447189	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCTCTTCAGTGTAT	NA	False	NA	3	True	AATAAA	-29	NA	135161195	135139611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152757_135160922
ES_00040255	chr4	-	954	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	13	-3	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	31.244999599936	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCATTGAGCAGTCTC	NA	False	NA	-7	True	AATAAA	-19	NA	135161121	135139621	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152754_135160922
ES_00040256	chr4	-	906	5	NNC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	31	-27	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	44.7045858945142	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGAATTGTTGTTTTT	NA	False	NA	-31	True	NA	NA	NA	135161103	135139645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_135139802_135145690_135145857_135147556_135147731_135152524_135152754_135160922
ES_00040257	chr4	-	1418	5	NNC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	25	2503	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	39.0600499231632	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGAAGTCATTTCTCACAA	NA	False	NA	NA	False	AAGAAA	-21	NA	135161109	135143250	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_135143910_135145690_135145857_135147556_135147731_135152524_135152757_135160922
ES_00040259	chr4	-	2778	16	NNC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_11	58.2178285025778	30	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGTTTTCATGCGCTTCT	NA	False	NA	-1	True	AATAAA	-21	NA	135300932	135269197	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279191_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
ES_00040262	chr4	-	1919	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	18.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135601161	135598228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135599766_135600205_135600411_135600984
ES_00040263	chr4	-	2749	3	FSM	ENSMUSG00000028675.13	ENSMUST00000142585.2	630	3	-456	-1663	-176	257	multi-exon	FALSE	canonical	1	2	junction_2	185.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGTGTAATTAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	135601337	135597971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135599766_135600205_135600411_135600587
ES_00040264	chr4	-	1687	9	NIC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	0	8	intron_retention	TRUE	canonical	3	428	junction_2	20.3127884594902	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGGTACAGCGTGGCC	NA	False	NA	-3	True	ATTAAA	-28	NA	135699914	135695526	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ES_00040266	chr4	-	929	6	FSM	ENSMUSG00000028670.15	ENSMUST00000156948.8	929	6	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_2	12.5920609909578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTAGCCCCGCTTTGGGCC	NA	False	NA	NA	False	NA	NA	NA	135697781	135696011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764
ES_00040267	chr4	-	1119	9	FSM	ENSMUSG00000028670.15	ENSMUST00000145350.2	1119	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	24.7474746186353	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGCTGTAGGCGGCGGG	NA	False	NA	NA	False	NA	NA	NA	135699899	135696074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135696379_135696454_135696629_135696738_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ES_00040272	chr4	-	990	5	FSM	ENSMUSG00000059291.16	ENSMUST00000155873.3	622	5	-368	0	-30	0	multi-exon	FALSE	canonical	3	48	junction_4	4504.49472749164	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGCCGATTGTCCCACG	NA	False	NA	NA	False	NA	NA	NA	135780769	135777590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780280
ES_00040275	chr4	-	2982	20	NNC	ENSMUSG00000036940.16	novel	3028	20	NA	NA	0	44872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.484099169408	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACAGCCAGATCTACAG	NA	False	NA	NA	False	NA	NA	NA	136329998	136232978	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_136233006_136277867_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136320275_136320442_136329542
ES_00040277	chr4	-	3019	19	FSM	ENSMUSG00000036940.16	ENSMUST00000116273.9	3008	19	0	-11	0	11	multi-exon	FALSE	canonical	3	907	junction_17	208.707545398275	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTCTATGTTG	NA	False	NA	6	True	AATAAA	-41	NA	136330034	136277839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136320275_136320442_136329542
ES_00040279	chr4	-	10893	16	FSM	ENSMUSG00000028664.15	ENSMUST00000105845.9	10902	16	12	-3	-2	3	multi-exon	FALSE	canonical	3	19	junction_7	4.97728172131469	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGTGGACTCAATATTG	NA	False	NA	NA	False	AATAAA	-18	NA	136563287	136374846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399819_136400573_136400683_136402678_136402842_136411230_136411356_136421045_136421382_136423309_136423466_136498266_136498952_136501890_136501956_136563080
ES_00040280	chr4	-	7282	19	NIC	ENSMUSG00000060862.11	novel	7192	19	NA	NA	14	1	combination_of_known_junctions	TRUE	canonical	3	15	junction_6	4.22697101369495	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTTGTGTGTTTCAGG	9692	False	NA	3	True	AATAAA	-21	NA	136776098	136707041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_136710556_136712124_136712352_136713793_136713881_136714519_136714683_136715858_136716074_136718808_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511_136728705_136734348_136734492_136735045_136735209_136744587_136744722_136745334_136746079_136775956
ES_00040282	chr4	-	2115	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	0	-7	0	7	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTTCCTCCGTCTTT	NA	False	NA	6	True	ATTAAA	-31	NA	137085031	137046999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ES_00040283	chr4	-	3641	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	-65	-2128	-44	62	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATATGACATCAACATCTA	NA	False	NA	61	True	NA	NA	NA	137085075	137046944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ES_00040284	chr4	-	678	1	FSM	ENSMUSG00000101493.2	ENSMUST00000189334.2	1117	1	226	213	226	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGGGTTTGGGATCTTC	2683	False	NA	NA	False	NA	NA	NA	137115467	137114789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_137114800_137115500
ES_00040285	chr4	-	476	2	FSM	ENSMUSG00000087476.2	ENSMUST00000135358.2	471	2	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTGCCATGTGTATATC	3893	False	NA	NA	False	NA	NA	NA	137433917	137424284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_137424676_137433832
ES_00040289	chr4	-	2847	1	NIC	ENSMUSG00000043621.14	novel	2460	4	NA	NA	3480	8	mono-exon	FALSE	NA	NA	NA	NA	NA	727	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAAGGCGTCCAATCT	8550	False	NA	NA	False	AATAAA	-21	NA	138448687	138445840	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_138445800_138448700
ES_00040290	chr4	-	1973	5	FSM	ENSMUSG00000041193.16	ENSMUST00000102512.11	1976	5	0	3	0	2	multi-exon	FALSE	canonical	3	70	junction_2	9.4339811320566	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACATGTTTTGGTGTATG	NA	False	NA	-3	True	AATAAA	-26	NA	138546566	138526557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310
ES_00040292	chr4	-	1668	8	FSM	ENSMUSG00000041161.9	ENSMUST00000097830.4	1668	8	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_7	2.1380899352994	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTTTCTCTCTCATT	NA	False	NA	0	True	NA	NA	NA	138641256	138622689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_138623226_138624026_138624209_138624867_138624965_138625317_138625450_138629162_138629286_138632467_138632581_138636792_138636942_138640920
ES_00040293	chr4	-	1833	4	FSM	ENSMUSG00000041120.7	ENSMUST00000042844.7	1793	4	-47	7	-47	-7	multi-exon	FALSE	canonical	2	2	junction_2	0.471404520791032	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTCCTCGTGGACTGG	NA	False	NA	NA	False	AATAAA	-18	NA	138820351	138809601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_138810914_138812551_138812664_138812764_138812960_138820137
ES_00040294	chr4	-	2553	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	0	-4	0	4	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCCTTCCTCGGACTG	5179	False	NA	NA	False	AATAAA	-42	NA	138858424	138829120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
ES_00040295	chr4	-	1410	9	FSM	ENSMUSG00000028744.16	ENSMUST00000172747.8	1405	9	0	-5	0	3	multi-exon	FALSE	canonical	3	14	junction_7	44.5112345369121	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTTCTGCTGCTCCTT	NA	False	NA	0	True	AGTAAA	-18	NA	139037976	139025835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139033920_139035039_139035162_139037939
ES_00040296	chr4	-	1529	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	6	-3	6	3	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTTCTGCTGCTCCTT	NA	False	NA	0	True	AGTAAA	-18	NA	139038013	139025835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
ES_00040298	chr4	-	639	1	FSM	ENSMUSG00000080708.2	ENSMUST00000117963.2	881	1	97	145	97	-145	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATCGAAGCTGCCCTCA	2172	False	NA	NA	False	NA	NA	NA	139073394	139072755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139072800_139073400
ES_00040299	chr4	-	848	6	FSM	ENSMUSG00000028741.14	ENSMUST00000131052.8	835	6	0	-13	0	13	multi-exon	FALSE	canonical	3	25	junction_5	422.625318692574	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTTTTGTTTTTTTC	8669	False	NA	11	True	NA	NA	NA	139076914	139074732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076829
ES_00040300	chr4	-	1232	8	FSM	ENSMUSG00000028741.14	ENSMUST00000102503.10	1221	8	2	-13	2	13	multi-exon	FALSE	canonical	3	786	junction_5	119.708489460771	1501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTTTTGTTTTTTTC	5698	False	NA	11	True	NA	NA	NA	139079885	139074732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ES_00040303	chr4	-	7521	1	FSM	ENSMUSG00000078234.7	ENSMUST00000105031.4	7807	1	294	-8	294	8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTGCCTTTGTGTGAAA	NA	False	NA	NA	False	AATAAA	-27	NA	139695043	139687522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139687500_139695000
ES_00040304	chr4	-	1979	10	FSM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	13.4421485642992	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139974095	139754156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139973612
ES_00040305	chr4	-	4587	28	NNC	ENSMUSG00000040964.17	novel	4493	28	NA	NA	8680	8	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_8	61.8600792931184	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTATGGGATGTCGTGG	NA	False	NA	6	True	AATAAA	-26	NA	140367381	140241787	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279106_140279232_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140367186
ES_00040306	chr4	-	4501	28	FSM	ENSMUSG00000040964.17	ENSMUST00000039204.10	4493	28	0	-8	0	8	multi-exon	FALSE	canonical	3	51	junction_21	42.1702734351014	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTATGGGATGTCGTGG	NA	False	NA	6	True	AATAAA	-26	NA	140376061	140241787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140314094_140314212_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
ES_00040307	chr4	-	4546	27	FSM	ENSMUSG00000040964.17	ENSMUST00000097820.9	4382	27	-164	0	-164	0	multi-exon	FALSE	canonical	3	130	junction_20	26.9722901858523	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140376231	140241795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
ES_00040308	chr4	-	3906	22	NIC	ENSMUSG00000040964.17	novel	4493	28	NA	NA	-2609	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_8	62.414131488981	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCTGTGGGGTTTATGGG	NA	False	NA	-3	True	AATAAA	-17	NA	140314263	140241796	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279106_140279232_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140314094
ES_00040312	chr4	-	2807	16	NNC	ENSMUSG00000025330.7	novel	2316	16	NA	NA	-64	367	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	26.9727434438711	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTTGTGAGATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	140501611	140472808	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477831_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
ES_00040313	chr4	-	2685	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	0	-369	0	369	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	140501547	140472806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
ES_00040314	chr4	-	3074	16	FSM	ENSMUSG00000025328.10	ENSMUST00000026377.9	3072	16	0	-2	0	2	multi-exon	FALSE	canonical	2	14	junction_8	5.0710507348631	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTGTTGGCCTTTCTT	NA	False	NA	2	True	AATAAA	-16	NA	140537959	140512673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147_140521256_140522923_140523036_140523123_140523228_140523647_140523827_140525359_140525486_140526215_140526334_140527391_140527454_140528855_140528929_140530777_140530959_140537826
ES_00040317	chr4	-	6655	38	NNC	ENSMUSG00000040860.17	novel	6582	37	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_37	17.8135379120419	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGTCCACTCAAATG	NA	False	NA	NA	False	NA	NA	NA	140787809	140743947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140785372_140785509_140787669
ES_00040318	chr4	-	1874	8	FSM	ENSMUSG00000028923.15	ENSMUST00000132906.8	1874	8	0	0	0	0	multi-exon	TRUE	canonical	1	6	junction_6	160.29029787182	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8500	False	NA	-10	True	AATAAA	-22	NA	140805653	140793822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801074_140802270_140802372_140805523
ES_00040320	chr4	-	946	2	FSM	ENSMUSG00000028923.15	ENSMUST00000132704.2	862	2	-36	-48	-36	0	multi-exon	FALSE	canonical	3	431	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGCAAGCCCATCGCC	NA	False	NA	-99	True	NA	NA	NA	140796185	140794657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140794924_140795505
ES_00040324	chr4	-	3190	4	FSM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	0	12	0	-12	multi-exon	FALSE	canonical	3	37	junction_2	172.554017307303	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTCCTCATTTCTGGC	NA	False	NA	-12	True	TATAAA	-35	NA	140867038	140840323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140843176_140845837_140846090_140847634_140847685_140867002
ES_00040325	chr4	-	3232	4	FSM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	0	12	0	-12	multi-exon	FALSE	canonical	3	169	junction_2	126.792043213374	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTCCTCATTTCTGGC	NA	False	NA	-12	True	TATAAA	-35	NA	140867077	140840323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140843176_140845837_140846093_140847634_140847685_140867002
ES_00040327	chr4	-	3188	3	FSM	ENSMUSG00000040842.18	ENSMUST00000039939.7	3200	3	0	12	0	-12	multi-exon	FALSE	canonical	3	50	junction_2	204	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTCCTCATTTCTGGC	NA	False	NA	-12	True	TATAAA	-35	NA	140867086	140840323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140843176_140845837_140846090_140867002
ES_00040328	chr4	-	1253	6	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8368	0	4991	0	3prime_fragment	FALSE	canonical	3	33	junction_5	1.6	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTCACCCATCTTC	NA	False	NA	1	True	AATAAA	-20	NA	141117147	141111920	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627
ES_00040329	chr4	-	2513	19	FSM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_14	15.0748134316813	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTCACCCATCTTCTC	9728	False	NA	3	True	AATAAA	-22	NA	141125515	141111918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387_141117499_141117652_141117723_141118656_141118831_141119083_141119169_141119835_141119938_141120051_141120137_141121723_141121850_141122269_141122349_141122429_141122508_141122906_141123047_141123824_141123954_141124540_141124670_141125259
ES_00040330	chr4	-	921	7	ISM	ENSMUSG00000006216.11	ENSMUST00000006378.9	2370	20	7676	0	-2981	0	3prime_fragment	FALSE	canonical	3	53	junction_6	23.8146780135464	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGTCCCCTCTCCTCCC	4154	False	NA	-4	True	AATAAA	-18	NA	141135649	141131663	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616
ES_00040331	chr4	-	1240	5	NIC	ENSMUSG00000006216.11	novel	2490	19	NA	NA	-2971	-3	intron_retention	FALSE	canonical	3	53	junction_4	28.4813535492961	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTAGTGTCCCCTCTCCT	4164	False	NA	-7	True	AATAAA	-15	NA	141135639	141131666	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616
ES_00040333	chr4	-	899	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	0	6	0	-6	multi-exon	FALSE	canonical	3	14	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGAGCGAAGGGAGTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	141163416	141159988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141160768_141163296
ES_00040334	chr4	-	12087	15	FSM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	0	-5	0	5	multi-exon	FALSE	canonical	3	15	junction_6	23.4699112630167	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGAAGGTGGTTGTCAC	NA	False	NA	-22	True	ATTAAA	-18	NA	141265760	141195195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420_141197922_141198680_141206701_141211035_141211137_141212869_141212984_141214876_141214991_141215303_141215430_141217156_141217309_141220706_141220908_141221548_141221710_141244146_141244630_141249382_141249704_141265474
ES_00040335	chr4	-	12304	16	FSM	ENSMUSG00000040761.17	ENSMUST00000105786.3	12299	16	0	-5	0	5	multi-exon	FALSE	canonical	2	5	junction_5	24.6816170909084	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGAAGGTGGTTGTCAC	NA	False	NA	-22	True	ATTAAA	-18	NA	141265908	141195195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420_141197922_141198680_141206701_141208056_141208126_141211035_141211137_141212869_141212984_141214876_141214991_141215303_141215430_141217156_141217309_141220706_141220908_141221548_141221710_141244146_141244630_141249382_141249704_141265474
ES_00040337	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327235	141303372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ES_00040339	chr4	-	777	3	FSM	ENSMUSG00000006219.13	ENSMUST00000137491.2	907	3	130	0	130	0	multi-exon	FALSE	canonical	3	1553	junction_1	76.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCCTCTCCCAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	141323650	141317360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141317437_141322534_141322791_141323205
ES_00040340	chr4	-	2872	6	FSM	ENSMUSG00000043085.15	ENSMUST00000143154.8	2898	6	26	0	26	0	multi-exon	FALSE	canonical	3	10	junction_2	37.2526509123847	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAATTAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	141345918	141340686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141342018_141342255_141342422_141343514_141343933_141344605_141344781_141344950_141345024_141345209
ES_00040341	chr4	-	2482	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	0	-4	0	0	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345292	141341543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
ES_00040342	chr4	-	1671	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345549	141341543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
ES_00040343	chr4	-	4172	20	FSM	ENSMUSG00000028917.15	ENSMUST00000084203.11	4136	20	-37	1	-37	-1	multi-exon	FALSE	canonical	2	5	junction_14	9.89893527949294	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGTCGCTGACCCTCT	7274	False	NA	-2	True	AATAAA	-19	NA	141391466	141353045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882_141357972_141358302_141358368_141358600_141358692_141358820_141358891_141359023_141359888_141361563_141361790_141364735_141364796_141366986_141367174_141368727_141368816_141369305_141369406_141369716_141369827_141369960_141370068_141391171
ES_00040344	chr4	-	4164	19	ISM	ENSMUSG00000028917.15	ENSMUST00000030751.5	4154	20	693	0	-88	0	3prime_fragment	FALSE	canonical	3	16	junction_18	6.60363723196225	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTCGCTGACCCTCTT	7223	False	NA	-1	True	AATAAA	-20	NA	141391517	141353044	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882_141357972_141358302_141358368_141358600_141358692_141358820_141358891_141359023_141359888_141361563_141361790_141366986_141367174_141368727_141368816_141369305_141369406_141369716_141369827_141369960_141370068_141391171
ES_00040345	chr4	-	9553	10	FSM	ENSMUSG00000078515.5	ENSMUST00000102484.5	9553	10	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_7	26.8842971285984	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGATCTGCTTCTTC	NA	False	NA	1	True	AATAAA	-16	NA	141450730	141404859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141412943_141416580_141416643_141419565_141419756_141422717_141422822_141426040_141426170_141430422_141430551_141433242_141433370_141435530_141435768_141440707_141440838_141450367
ES_00040349	chr4	-	2389	4	FSM	ENSMUSG00000040659.4	ENSMUST00000036854.4	2381	4	0	-8	0	8	multi-exon	FALSE	canonical	3	474	junction_2	32.1696889771861	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGCACTGTTTTTGAA	3876	False	NA	-5	True	NA	NA	NA	141602231	141585444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141587190_141587858_141587994_141589115_141589264_141601870
ES_00040350	chr4	-	1349	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	12	5	12	-5	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGATAGTGTTTCATT	3728	False	NA	NA	False	AGTAAA	-24	NA	141660388	141643604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
ES_00040352	chr4	-	1877	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	0	-2	0	2	multi-exon	FALSE	canonical	3	173	junction_2	4	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACCTCATTCAGTCATT	9800	False	NA	-4	True	AATAAA	-20	NA	141811615	141758300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141759406_141764715_141765245_141811372
ES_00040356	chr4	-	5640	2	FSM	ENSMUSG00000040606.15	ENSMUST00000148812.2	5725	2	101	-16	101	12	multi-exon	FALSE	canonical	3	222	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGATTGTTTCTACGG	1641	False	NA	9	True	AATAAA	-31	NA	141873675	141866538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141869108_141870604
ES_00040359	chr4	-	3936	8	NIC	ENSMUSG00000040606.15	novel	3843	8	NA	NA	-78	12	combination_of_known_junctions	FALSE	canonical	3	79	junction_3	56.4110280143223	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGATTGTTTCTACGG	NA	False	NA	9	True	AATAAA	-31	NA	141966790	141866538	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_141869108_141870604_141870656_141874328_141874460_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
ES_00040361	chr4	-	6678	9	NNC	ENSMUSG00000057637.14	novel	617	6	NA	NA	0	-20071	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_6	9.44722181384559	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGCATTTTGTCCATAAA	NA	False	NA	4	True	AATAAA	-24	NA	142939275	142854031	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_142855545_142858279_142862670_142868693_142868805_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
ES_00040364	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	False	NA	-23	True	AATAAA	-20	NA	143026134	142994000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
ES_00040366	chr4	-	4826	1	Intergenic	novelGene_2999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTCTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	143715401	143710575	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_143710600_143715400
ES_00040368	chr4	-	2134	2	ISM	ENSMUSG00000078509.2	ENSMUST00000105762.2	1753	3	978	-783	978	783	3prime_fragment	FALSE	canonical	1	3	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGTATTTTTTTTC	NA	False	NA	-11	True	AATAAA	-13	NA	143719961	143716905	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_143718582_143719503
ES_00040375	chr4	-	3818	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTATCTGTTTGTT	7832	False	NA	NA	False	AATAAA	-38	NA	144973440	144940032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
ES_00040376	chr4	-	3453	13	FSM	ENSMUSG00000028602.13	ENSMUST00000030339.13	3414	13	-40	1	-23	-1	multi-exon	FALSE	canonical	2	5	junction_11	3.685557397916	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCTGCCTTTGGTATTT	NA	False	NA	NA	False	AATAAA	-14	NA	145041757	144993707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715_145011770_145011895_145011995_145014548_145014647_145014995_145015087_145019163_145019331_145019668_145019760_145023419_145023564_145025303_145025421_145029647_145029736_145041591
ES_00040384	chr4	-	635	1	FSM	ENSMUSG00000095865.2	ENSMUST00000122151.2	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTCCTAAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	146649544	146648909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_146648900_146649500
ES_00040385	chr4	-	4021	1	Intergenic	novelGene_3031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATGCAGTGATTTTCTGA	56	False	NA	NA	False	NA	NA	NA	146806087	146802066	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_146802100_146806100
ES_00040386	chr4	-	3040	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	122.050535981344	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146913241_146913577_146914284_146976159_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993882
ES_00040387	chr4	-	1314	5	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	0	61894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.527393833689	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGCAGTGAATGTGGC	NA	False	NA	NA	False	NA	NA	NA	146993984	146914258	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146914284_146976159_146977116_146978205_146978333_146982168_146982273_146993882
ES_00040390	chr4	-	1499	7	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	0	61726	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	107.568195423492	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAGTAGTAAAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	146993984	146914426	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146914452_146976159_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991966_146992072_146993882
ES_00040395	chr4	-	932	4	Antisense	novelGene_ENSMUSG00000067919.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	44.312024954357	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTTCGGAGGATTCAT	NA	False	NA	NA	False	NA	NA	NA	147144222	147141864	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_147142262_147142597_147142766_147143688_147143807_147143973
ES_00040397	chr4	-	627	1	FSM	ENSMUSG00000094017.2	ENSMUST00000118441.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAGTGGCTGTCCTAAA	NA	False	NA	NA	False	NA	NA	NA	147171441	147170814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147170800_147171400
ES_00040398	chr4	-	685	1	FSM	ENSMUSG00000082599.4	ENSMUST00000117417.2	456	1	-79	-150	-79	150	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTCTTTAATCCCAGCAAT	NA	False	NA	NA	False	NA	NA	NA	147612710	147612025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147612000_147612700
ES_00040399	chr4	-	2594	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
ES_00040400	chr4	-	2651	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.592058940367	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726997	147696393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147698506_147699736_147699864_147702873_147703015_147725368_147725463_147726820
ES_00040401	chr4	-	2560	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	0	-2	0	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726965	147696393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
ES_00040402	chr4	-	2547	5	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	-55977	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	193.526483975708	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGACTTGCTTGTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	147782947	147696395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147782813
ES_00040403	chr4	-	2885	4	FSM	ENSMUSG00000062518.8	ENSMUST00000117638.2	2885	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	89.2238134630486	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147787010	147757958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147760511_147762673_147762801_147766723_147766828_147786908
ES_00040404	chr4	-	548	5	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	-80	-2494	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	100.492226067492	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCCATGAACACATGAATA	NA	False	NA	NA	False	NA	NA	NA	147787090	147760452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147760511_147762673_147762801_147766723_147766828_147784759_147784837_147786908
ES_00040405	chr4	-	3456	1	FSM	ENSMUSG00000081179.2	ENSMUST00000121031.2	2950	1	0	-506	0	506	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCTGAATTCAACATATG	NA	False	NA	NA	False	NA	NA	NA	147822883	147819427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147819400_147822900
ES_00040406	chr4	-	1416	1	FSM	ENSMUSG00000083642.2	ENSMUST00000118892.2	745	1	-105	-566	-105	566	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGATCAAGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	147831123	147829707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147829700_147831100
ES_00040410	chr4	-	907	5	NIC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-10	-1540	combination_of_known_splicesites	FALSE	canonical	2	14	junction_3	87.6880122935855	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCATCAGATCCATCT	9513	False	NA	NA	False	NA	NA	NA	147894255	147840195	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_147840693_147842158_147842286_147845677_147845736_147891546_147891641_147894124
ES_00040411	chr4	-	1073	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-10	-1770	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	100.961316849574	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTCAATCAAGGAATCCAC	9513	False	NA	NA	False	AATACA	-40	NA	147894255	147840425	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147891546_147891641_147893775
ES_00040413	chr4	-	2910	3	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	79	-428	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	25.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGTGTGCGTCTGTTT	9550	False	NA	-3	True	NA	NA	NA	147894218	147867203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147868955_147891546_147891641_147893153
ES_00040414	chr4	-	2376	4	FSM	ENSMUSG00000093594.2	ENSMUST00000176201.2	2516	4	0	140	0	-140	multi-exon	TRUE	canonical	3	10	junction_1	44.5146667465405	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGTTATGAGTTCA	9471	False	NA	NA	False	NA	NA	NA	147894297	147866915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147868955_147880114_147880185_147891546_147891641_147894124
ES_00040417	chr4	-	4238	4	FSM	ENSMUSG00000059423.14	ENSMUST00000105718.8	4238	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	6.37704215656966	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCGTCAGTGTCCTCT	3941	False	NA	NA	False	ATTAAA	-15	NA	147932823	147907442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147911404_147912866_147912928_147913126_147913254_147932734
ES_00040419	chr4	-	1747	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	54	12	1	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTCTCCATGTAAGCC	NA	False	NA	-11	True	AATAAA	-17	NA	147953122	147945246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ES_00040420	chr4	-	1507	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952955	147945247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ES_00040421	chr4	-	1852	11	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	96.0689856301189	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952956	147945247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
ES_00040422	chr4	-	4241	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	0	0	0	0	multi-exon	TRUE	canonical	2	51	junction_4	9.87139526330723	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTCTCTGCCTGCAG	NA	False	NA	-4	True	AATAAA	-19	NA	147989144	147958055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
ES_00040424	chr4	-	1917	6	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	0	81252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.591605606472	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCACACACTAATGGATG	NA	False	NA	NA	False	NA	NA	NA	148172488	148080265	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_148080298_148163628_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ES_00040425	chr4	-	2045	6	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	-130	81252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.591605606472	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCACACACTAATGGATG	NA	False	NA	NA	False	NA	NA	NA	148172618	148080265	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_148080296_148163628_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ES_00040426	chr4	-	3306	23	FSM	ENSMUSG00000029016.14	ENSMUST00000030879.12	3306	23	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_12	12.7042811811837	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCAGTAGTCCCCACT	7422	False	NA	NA	False	ATTAAA	-35	NA	148123270	148090590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
ES_00040427	chr4	-	588	1	FSM	ENSMUSG00000094320.2	ENSMUST00000117487.3	462	1	-45	-81	-45	81	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGCTTTGGAATGGCC	7057	False	NA	NA	False	NA	NA	NA	148152994	148152406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148152400_148153000
ES_00040428	chr4	-	3996	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	0	0	0	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGCTGTGTGATTAAT	NA	False	NA	-3	True	AATAAA	-18	NA	148172488	148161517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ES_00040429	chr4	-	1243	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	0	-3	0	3	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTCATCCTGTTTGGTT	NA	False	NA	57	True	NA	NA	NA	148236592	148230169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ES_00040430	chr4	-	1429	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	-12	-71	0	0	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236382	148230172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
ES_00040431	chr4	-	1076	6	NNC	ENSMUSG00000055401.15	novel	1346	6	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236581	148230243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
ES_00040432	chr4	-	1164	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	-1	0	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236516	148230243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
ES_00040433	chr4	-	794	5	FSM	ENSMUSG00000055401.15	ENSMUST00000126615.8	794	5	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	8.18535277187245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCGTGTCACCAACAGC	NA	False	NA	NA	False	NA	NA	NA	148234176	148230548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835
ES_00040435	chr4	-	1761	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	74	-6	74	3	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGCGGCTTTTGGAGG	NA	False	NA	0	True	AATAAA	-19	NA	148244466	148237253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ES_00040436	chr4	-	1195	5	FSM	ENSMUSG00000029001.16	ENSMUST00000151127.8	1403	5	0	208	0	-208	multi-exon	FALSE	canonical	3	37	junction_3	3.34477204006491	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGAAGTGCCCAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	148244308	148240162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ES_00040437	chr4	-	2475	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	31.5	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529226	148518951	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_148521100_148528384_148528587_148529101
ES_00040438	chr4	-	2992	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529228	148518951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148521100_148528384
ES_00040440	chr4	-	1117	1	FSM	ENSMUSG00000082860.2	ENSMUST00000120110.2	821	1	-44	-252	-44	252	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAGTACAGCCTTGGG	773	False	NA	NA	False	NA	NA	NA	148654377	148653260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148653300_148654400
ES_00040441	chr4	-	6513	7	FSM	ENSMUSG00000041459.16	ENSMUST00000172073.8	6513	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	389.131261772797	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00040442	chr4	-	7477	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711476	148696838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00040443	chr4	-	2871	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	0	-967	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGGAGTCCTGGGGTAA	NA	False	NA	NA	False	ATTAAA	-26	NA	148711215	148700215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00040444	chr4	-	2006	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGATCGTGAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	148711222	148700375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00040445	chr4	-	6495	7	FSM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_1	333.080404040159	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00040446	chr4	-	6502	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711222	148696838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00040450	chr4	-	1973	9	FSM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	33	0	-15	0	multi-exon	FALSE	canonical	3	391	junction_6	18.1757909043871	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGCTCTGACCTCGTC	NA	False	NA	-12	True	AATAAA	-20	NA	149184300	149044991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
ES_00040451	chr4	-	412	5	FSM	ENSMUSG00000073705.11	ENSMUST00000105696.8	412	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	195.770752412101	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGGGGATGGACGGAACC	NA	False	NA	NA	False	NA	NA	NA	149222005	149211577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149211603_149211738_149211895_149216095_149216130_149216715_149216840_149221932
ES_00040453	chr4	-	1110	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGTCTGCTTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	149222086	149212654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ES_00040456	chr4	-	1038	1	FSM	ENSMUSG00000080746.4	ENSMUST00000120596.2	892	1	-68	-78	-68	78	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTATAGGGCTGGAGAG	NA	False	NA	NA	False	AATAAA	-28	NA	149227913	149226875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149226900_149227900
ES_00040463	chr4	-	7152	21	FSM	ENSMUSG00000063077.16	ENSMUST00000030806.6	6991	21	-160	-1	-90	1	multi-exon	FALSE	canonical	3	40	junction_1	18.6480561989715	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGCATGATCTTTAAGT	7149	False	NA	NA	False	AATAAA	-17	NA	149392240	149318189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149322941_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342461_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
ES_00040467	chr4	-	627	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	0	-6	0	6	multi-exon	FALSE	canonical	3	264	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGCTTCTGTCTGTTCA	NA	False	NA	NA	False	ATTAAA	-36	NA	149510673	149482950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149483243_149510338
ES_00040470	chr4	-	1514	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	0	-276	0	276	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCACAAGCTACTCTTT	1652	False	NA	NA	False	NA	NA	NA	149569655	149552739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
ES_00040471	chr4	-	4761	23	FSM	ENSMUSG00000039936.19	ENSMUST00000177654.8	4765	23	0	4	0	-3	multi-exon	FALSE	canonical	2	3	junction_11	5.46684219969478	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGTTCTTGGCTCAAA	NA	False	NA	-6	True	AATAAA	-14	NA	149758651	149733630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739715_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532
ES_00040473	chr4	-	824	3	FSM	ENSMUSG00000039936.19	ENSMUST00000137430.8	824	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTTTCATTCTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	149760550	149757895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149758419_149758532_149758652_149760368
ES_00040474	chr4	-	3697	11	FSM	ENSMUSG00000044700.16	ENSMUST00000105687.9	3697	11	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	67.7469556511582	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTTTTCTTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	149822501	149799831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ES_00040475	chr4	-	3781	3	FSM	ENSMUSG00000044700.16	ENSMUST00000139923.2	4069	3	288	0	288	0	multi-exon	FALSE	canonical	3	328	junction_2	13.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCGTCTTTTTTTCTTTC	NA	False	NA	-8	True	AATAAA	-39	NA	149814856	149809320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149811888_149812358_149812709_149813992
ES_00040476	chr4	-	3621	6	FSM	ENSMUSG00000044700.16	ENSMUST00000103208.2	3620	6	0	-1	0	1	multi-exon	FALSE	canonical	3	307	junction_5	21.9508541975022	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGTCTTTTTTTCTTTCA	NA	False	NA	-7	True	AATAAA	-40	NA	149822501	149809319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ES_00040477	chr4	-	1892	7	FSM	ENSMUSG00000028982.10	ENSMUST00000105686.3	1887	7	0	-5	0	5	multi-exon	FALSE	canonical	3	394	junction_5	32.4623713791146	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCCTGCATTTATCCT	NA	False	NA	NA	False	AATAAA	-25	NA	149858734	149828487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149858456
ES_00040485	chr4	-	881	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	1	0	-1	multi-exon	FALSE	canonical	3	295	junction_6	2038.03331806807	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTGTGTCTGGGGTCTT	5729	False	NA	-2	True	AATAAA	-25	NA	150998894	150981590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
ES_00040486	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2143.40985477709	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	False	NA	-107	True	NA	NA	NA	150994108	150981695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
ES_00040489	chr4	-	1861	6	NNC	ENSMUSG00000028955.4	novel	2120	5	NA	NA	-55	38440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	84.9305598709911	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGCCTCAAACTCAGAAA	NA	False	NA	NA	False	NA	NA	NA	151142475	151093316	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_151093380_151132143_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ES_00040491	chr4	-	2116	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	0	4	0	-4	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCGTGTTTCTTGG	NA	False	NA	-1	True	AATAAA	-18	NA	151142410	151131760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ES_00040496	chr4	-	2124	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	0	74	0	-74	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCAGGCAGGAGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	151946161	151875104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
ES_00040497	chr4	-	506	3	FSM	ENSMUSG00000014592.22	ENSMUST00000135780.2	506	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	493.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_151876960_151914874_151914994_151946081
ES_00040503	chr4	-	2215	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	3	0	3	0	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8682	False	NA	-1	True	AATAAA	-18	NA	152112115	152104230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ES_00040509	chr4	-	3594	15	FSM	ENSMUSG00000028931.13	ENSMUST00000030768.10	3597	15	0	3	0	-2	multi-exon	TRUE	canonical	1	4	junction_13	3.43748840443313	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACGTTTCTGATCTCTCC	NA	False	NA	-8	True	AATAAA	-18	NA	152562046	152475204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152561857
ES_00040511	chr4	-	2180	8	NNC	ENSMUSG00000029027.10	novel	1634	8	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	16.0433087329902	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTCAAAATTTTTTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	154059494	154048904	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154056342_154056518_154057236_154057426_154059025_154059153_154059323
ES_00040513	chr4	-	2095	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	0	-2	0	2	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTCAAAATTTTTTGAAC	NA	False	NA	NA	False	AATAAA	-17	NA	154059583	154048903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
ES_00040514	chr4	-	989	6	ISM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	250	1025	175	-570	intron_retention	FALSE	canonical	3	30	junction_4	4.4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACACAAGCTGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	154059333	154049930	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025
ES_00040516	chr4	-	532	4	FSM	ENSMUSG00000078350.12	ENSMUST00000146054.8	707	4	175	0	-9	0	multi-exon	FALSE	canonical	3	33	junction_2	2.35702260395516	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGGGGATTCCCTCCC	NA	False	NA	-23	True	AATAAA	-16	NA	154110432	154107767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110365
ES_00040518	chr4	-	1725	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	0	-1	0	1	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGCTCCTTTTTGAAG	NA	False	NA	-2	True	AGTAAA	-17	NA	154245123	154241940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
ES_00040520	chr4	-	2883	15	FSM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	0	-23	0	23	multi-exon	FALSE	canonical	3	21	junction_12	5.46976849116476	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCATGTTCTGTCCTTAGT	NA	False	NA	57	True	AATATA	-27	NA	154384511	154362919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154384281
ES_00040521	chr4	-	3034	16	NIC	ENSMUSG00000029032.13	novel	2860	15	NA	NA	-153	-90	combination_of_known_junctions	FALSE	canonical	2	9	junction_15	8.43958924750883	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGTGATTACAGATCT	NA	False	NA	-56	True	NA	NA	NA	154384664	154363032	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154377288_154377400_154384281
ES_00040522	chr4	-	3359	7	NIC	ENSMUSG00000039410.17	novel	8544	17	NA	NA	9	-2278	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	8.46069343099804	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTCTGTGGACCTTTTT	NA	False	NA	71	True	NA	NA	NA	154419370	154402859	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_154405323_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419306
ES_00040525	chr4	-	476	3	FSM	ENSMUSG00000039410.17	ENSMUST00000149605.2	615	3	0	139	0	-139	multi-exon	FALSE	canonical	0	0	junction_1	2	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGGCAAACACAACCTCAC	NA	False	NA	NA	False	AAAAAG	-1	NA	154721254	154561095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154561147_154613038_154613389_154721179
ES_00040528	chr4	-	3247	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	-1444	0	1444	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACAAAAAACTGTATTAG	NA	False	NA	NA	False	NA	NA	NA	155170828	155157122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ES_00040529	chr4	-	3038	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	2	-1444	0	1444	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACAAAAAACTGTATTAG	NA	False	NA	NA	False	NA	NA	NA	155170828	155157122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ES_00040530	chr4	-	1651	8	NIC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	14	-57	combination_of_known_junctions	FALSE	canonical	3	91	junction_7	617.350990035619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTAAGTGACTTTTAAA	NA	False	NA	-12	True	GATAAA	-20	NA	155170814	155158623	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167694_155170661
ES_00040531	chr4	-	221	2	Intergenic	novelGene_3055	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTACTATTTCAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	155253247	155163531	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_155163729_155253223
ES_00040534	chr4	-	2641	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCATCAGTAAACCAAAT	NA	False	NA	NA	False	AAAACA	-10	NA	155445818	155346177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
ES_00040538	chr4	-	1430	8	FSM	ENSMUSG00000029061.3	ENSMUST00000030937.2	1434	8	0	4	0	-2	multi-exon	FALSE	canonical	2	6	junction_5	2.50713268211203	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGTCTGTGTTGTTTCC	NA	False	NA	NA	False	GATAAA	-12	NA	155737841	155735115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736610_155736678_155736819_155736905_155737043_155737484
ES_00040539	chr4	-	3287	17	FSM	ENSMUSG00000029060.18	ENSMUST00000151843.8	3282	17	0	-5	0	0	multi-exon	FALSE	canonical	3	173	junction_11	49.9677630452875	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTTCCTTGCCTAAG	9509	False	NA	0	True	TATAAA	-18	NA	155751566	155739133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470
ES_00040541	chr4	-	3647	19	FSM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	0	-5	0	0	multi-exon	FALSE	canonical	3	118	junction_12	57.2103817307469	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTTCCTTGCCTAAG	7420	False	NA	0	True	TATAAA	-18	NA	155753655	155739133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ES_00040542	chr4	-	1564	6	FSM	ENSMUSG00000029060.18	ENSMUST00000139788.8	1558	6	0	-6	0	0	multi-exon	FALSE	canonical	3	307	junction_5	33.7069725724515	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTTCCTTGCCTAAG	NA	False	NA	0	True	TATAAA	-18	NA	155741184	155739133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740763_155740850_155740978_155741102
ES_00040543	chr4	-	4088	20	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	0	334	intron_retention	FALSE	canonical	3	72	junction_13	70.1036035839604	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGAGAGGGTCCTGGCT	7421	False	NA	NA	False	NA	NA	NA	155753654	155738799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ES_00040544	chr4	-	4076	20	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	0	334	intron_retention	FALSE	canonical	3	119	junction_13	62.6646971262766	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGAGAGGGTCCTGGCT	7421	False	NA	NA	False	NA	NA	NA	155753654	155738799	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743447_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ES_00040546	chr4	-	2414	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	0	-1	0	1	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTTGATGGCTGAGGT	NA	False	NA	-8	True	AATAAA	-20	NA	155845550	155825096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
ES_00040547	chr4	-	836	2	FSM	ENSMUSG00000029036.19	ENSMUST00000126725.2	836	2	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTCCTGGACATTACT	NA	False	NA	NA	False	NA	NA	NA	155830802	155825290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155825810_155830485
ES_00040556	chr4	-	1681	1	FSM	ENSMUSG00000103183.2	ENSMUST00000195694.2	4105	1	516	1908	516	-1908	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATACATAAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	156106601	156104920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_156104900_156106600
ES_00040558	chr4	-	2852	11	FSM	ENSMUSG00002076083.1	ENSMUST00020183325.1	2830	11	0	-22	0	0	multi-exon	TRUE	canonical	2	8	junction_2	26.227657158046	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGCCCCCTTTGTAC	8305	False	NA	0	True	AATAAA	-40	NA	156319257	156313791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_156315144_156315357_156315462_156315560_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317747_156317903_156318048_156318171_156318259_156318520_156319112
ES_00040563	chr4	+	225	1	Intergenic	novelGene_2683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATGACCAAGGCGGCCC	NA	False	NA	NA	False	NA	NA	NA	4977924	4978149	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_4977900_4978100
ES_00040564	chr4	+	222	1	Intergenic	novelGene_2684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAGGGCATCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	5402872	5403094	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_5402900_5403100
ES_00040565	chr4	+	240	1	Intergenic	novelGene_2685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1695	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTGATTTATACTCCAT	NA	False	NA	NA	False	AATAAA	-26	NA	6449655	6449895	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_6449700_6449900
ES_00040566	chr4	+	235	1	Intergenic	novelGene_2689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGGAAGATACTGTTAC	NA	False	NA	NA	False	NA	NA	NA	8181110	8181345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_8181100_8181300
ES_00040567	chr4	+	265	1	Intergenic	novelGene_2690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTTTTAGGAAATAAAGG	NA	False	NA	NA	False	NA	NA	NA	10429499	10429764	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_10429500_10429800
ES_00040569	chr4	+	347	1	Intergenic	novelGene_2695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTATACTTTGACAA	NA	False	NA	NA	False	NA	NA	NA	11044948	11045295	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11044900_11045300
ES_00040570	chr4	+	229	1	Intergenic	novelGene_2696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATTTTAAAAGACAAT	NA	False	NA	NA	False	NA	NA	NA	11045937	11046166	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11045900_11046200
ES_00040572	chr4	+	265	1	Intergenic	novelGene_2702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGCTGGGATTTGAACTC	NA	False	NA	NA	False	NA	NA	NA	11255133	11255398	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11255100_11255400
ES_00040573	chr4	+	730	1	Intergenic	novelGene_2706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTTGTACGTCTGTCCTT	6420	False	NA	NA	False	ACTAAA	-2	NA	12130820	12131550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_12130800_12131600
ES_00040574	chr4	+	319	1	Intergenic	novelGene_2708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	415	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTCATTACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	12756294	12756613	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_12756300_12756600
ES_00040575	chr4	+	920	1	Intergenic	novelGene_2709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCAAGTACCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	14231162	14232082	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_14231200_14232100
ES_00040576	chr4	+	203	1	Intergenic	novelGene_2711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCCAGGGCCAAAAAGG	7134	False	NA	NA	False	NA	NA	NA	14921587	14921790	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_14921600_14921800
ES_00040577	chr4	+	254	1	Intergenic	novelGene_2712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	513	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCTTTATAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	19006329	19006583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_19006300_19006600
ES_00040578	chr4	+	415	1	Intergenic	novelGene_2714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCAAAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	19149683	19150098	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_19149700_19150100
ES_00040579	chr4	+	893	1	Intergenic	novelGene_2715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCTCAATAGGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	19154737	19155630	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_19154700_19155600
ES_00040581	chr4	+	1595	1	Intergenic	novelGene_2722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGATGGAACTTTCAG	NA	False	NA	NA	False	NA	NA	NA	24643514	24645109	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_24643500_24645100
ES_00040582	chr4	+	232	1	Intergenic	novelGene_2724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3336	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCAATAAATTCTTTAAAA	NA	False	NA	NA	False	ATTAAA	-30	NA	25304358	25304590	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_25304400_25304600
ES_00040583	chr4	+	263	1	Intergenic	novelGene_2725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCTGACTTAAATCGCCC	NA	False	NA	NA	False	NA	NA	NA	25541264	25541527	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_25541300_25541500
ES_00040584	chr4	+	297	1	Intergenic	novelGene_2728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTTTTTTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	32505620	32505917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_32505600_32505900
ES_00040585	chr4	+	213	1	Intergenic	novelGene_2729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTCTGTGTTTGAATAC	NA	False	NA	NA	False	NA	NA	NA	33006008	33006221	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_33006000_33006200
ES_00040588	chr4	+	231	1	Intergenic	novelGene_2735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGACAAAAGCCACATGC	NA	False	NA	NA	False	NA	NA	NA	34959054	34959285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_34959100_34959300
ES_00040589	chr4	+	219	1	Intergenic	novelGene_2736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATATTATTAAGCAGTAT	NA	False	NA	NA	False	NA	NA	NA	35166506	35166725	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_35166500_35166700
ES_00040591	chr4	+	549	1	Intergenic	novelGene_2737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGGATATTGTAACTTTG	NA	False	NA	NA	False	NA	NA	NA	35990694	35991243	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_35990700_35991200
ES_00040592	chr4	+	219	1	Intergenic	novelGene_2740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGTCATTATGGATTC	NA	False	NA	NA	False	NA	NA	NA	38983271	38983490	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_38983300_38983500
ES_00040593	chr4	+	1124	1	Intergenic	novelGene_2745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCATCTTGGTCCGGGA	NA	False	NA	NA	False	NA	NA	NA	40595226	40596350	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40595200_40596400
ES_00040594	chr4	+	690	1	Intergenic	novelGene_2746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTACATGTGCATAATTTA	8703	False	NA	NA	False	NA	NA	NA	40605029	40605719	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40605000_40605700
ES_00040595	chr4	+	2251	1	Intergenic	novelGene_2748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCGCCAAAATGTTGCGG	9612	False	NA	NA	False	NA	NA	NA	40605938	40608189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40605900_40608200
ES_00040596	chr4	+	205	1	Intergenic	novelGene_2761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTTCTTATTCATC	NA	False	NA	NA	False	NA	NA	NA	44093489	44093694	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_44093500_44093700
ES_00040597	chr4	+	1072	1	Intergenic	novelGene_2765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTGGCTGAAAAACCAGC	NA	False	NA	NA	False	NA	NA	NA	46241249	46242321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_46241200_46242300
ES_00040599	chr4	+	233	1	Intergenic	novelGene_2768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTATATGTAGCTCTTTG	NA	False	NA	NA	False	NA	NA	NA	48405980	48406213	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_48406000_48406200
ES_00040600	chr4	+	219	1	Intergenic	novelGene_2769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGCTCAACTTCTACCAT	NA	False	NA	NA	False	NA	NA	NA	48512949	48513168	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_48512900_48513200
ES_00040601	chr4	+	218	1	Intergenic	novelGene_2771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTCCCTTCTGAAACAAAA	4897	False	NA	NA	False	NA	NA	NA	49654998	49655216	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_49655000_49655200
ES_00040602	chr4	+	241	1	Intergenic	novelGene_2772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTCTTCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51547150	51547391	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_51547200_51547400
ES_00040604	chr4	+	204	1	Intergenic	novelGene_2774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAACTACAAAA	NA	False	NA	NA	False	NA	NA	NA	52640565	52640769	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_52640600_52640800
ES_00040606	chr4	+	207	1	Intergenic	novelGene_2780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTAGGGTTCTTGATAGC	NA	False	NA	NA	False	NA	NA	NA	55099698	55099905	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_55099700_55099900
ES_00040609	chr4	+	241	1	Intergenic	novelGene_2787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCCAACATTGAGGTGA	NA	False	NA	NA	False	TATAAA	-35	NA	61483979	61484220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_61484000_61484200
ES_00040610	chr4	+	218	1	Intergenic	novelGene_2789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTTCCTTTATAATATC	NA	False	NA	NA	False	NA	NA	NA	62180086	62180304	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_62180100_62180300
ES_00040611	chr4	+	230	1	Intergenic	novelGene_2792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTTCTTTACCTGTTC	NA	False	NA	NA	False	NA	NA	NA	64939708	64939938	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_64939700_64939900
ES_00040612	chr4	+	827	1	Intergenic	novelGene_2801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTTAAAAATTATGGT	NA	False	NA	NA	False	NA	NA	NA	77493610	77494437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_77493600_77494400
ES_00040613	chr4	+	838	1	Intergenic	novelGene_2802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCTTAATAACTTTGCA	NA	False	NA	NA	False	NA	NA	NA	77494843	77495681	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_77494800_77495700
ES_00040614	chr4	+	211	1	Intergenic	novelGene_2806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGAGAAGGTTGACAAGGT	NA	False	NA	NA	False	AAAAAG	-4	NA	82630658	82630869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_82630700_82630900
ES_00040618	chr4	+	279	1	Intergenic	novelGene_2809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	746	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGCAGAAGCAAAATC	NA	False	NA	NA	False	NA	NA	NA	83630891	83631170	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_83630900_83631200
ES_00040619	chr4	+	685	1	Intergenic	novelGene_2811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACCTGGTTAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-7	NA	84835297	84835982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_84835300_84836000
ES_00040621	chr4	+	202	1	Intergenic	novelGene_2816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCGAAAACAATTCTTAACAA	NA	False	NA	NA	False	NA	NA	NA	94596710	94596912	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_94596700_94596900
ES_00040622	chr4	+	287	1	Intergenic	novelGene_2822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGTATTGCAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	99017968	99018255	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_99018000_99018300
ES_00040623	chr4	+	204	1	Intergenic	novelGene_2823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATTTTACACTAATTT	NA	False	NA	NA	False	NA	NA	NA	99075552	99075756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_99075600_99075800
ES_00040624	chr4	+	208	1	Intergenic	novelGene_2824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAACGGTCTCAAAAACA	NA	False	NA	NA	False	AAAAAG	-3	NA	99481117	99481325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_99481100_99481300
ES_00040625	chr4	+	211	1	Intergenic	novelGene_2826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGGCCAGGCCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	99520770	99520981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_99520800_99521000
ES_00040626	chr4	+	210	1	Intergenic	novelGene_2832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGTCCTTTCACTTCCA	6212	False	NA	NA	False	NA	NA	NA	106622099	106622309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_106622100_106622300
ES_00040628	chr4	+	245	1	Intergenic	novelGene_2836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACTTCCATTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107616626	107616871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_107616600_107616900
ES_00040630	chr4	+	237	1	Intergenic	novelGene_2840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACTAAGGGTGGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	108273898	108274135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108273900_108274100
ES_00040631	chr4	+	218	1	Intergenic	novelGene_2841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTTTTTTCAGTTGAT	2072	False	NA	NA	False	NA	NA	NA	108393527	108393745	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108393500_108393700
ES_00040632	chr4	+	239	1	Intergenic	novelGene_2843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATTAAATAAACTTCTA	3799	False	NA	NA	False	AATAAA	-16	NA	108838603	108838842	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108838600_108838800
ES_00040633	chr4	+	363	1	Intergenic	novelGene_2844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAAACAACTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	109529529	109529892	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_109529500_109529900
ES_00040634	chr4	+	209	1	Intergenic	novelGene_2846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	525	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGGAGGTAGGGTGCC	NA	False	NA	NA	False	NA	NA	NA	110092213	110092422	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_110092200_110092400
ES_00040635	chr4	+	204	1	Intergenic	novelGene_2849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATCACTGCTTGCCGAA	NA	False	NA	NA	False	NA	NA	NA	114896977	114897181	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_114897000_114897200
ES_00040636	chr4	+	374	1	Intergenic	novelGene_2850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATATTTTTTAAAAACT	4439	False	NA	NA	False	NA	NA	NA	115804681	115805055	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_115804700_115805100
ES_00040637	chr4	+	228	1	Intergenic	novelGene_2852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACACTATAGGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	115922357	115922585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_115922400_115922600
ES_00040638	chr4	+	240	1	Intergenic	novelGene_2853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCCCCACAACAGCAACA	NA	False	NA	NA	False	NA	NA	NA	115983392	115983632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_115983400_115983600
ES_00040639	chr4	+	234	1	Intergenic	novelGene_2855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATATTCCTTAGCAGCAAT	NA	False	NA	NA	False	TTTAAA	-26	NA	116377076	116377310	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116377100_116377300
ES_00040643	chr4	+	200	1	Intergenic	novelGene_2865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACCCGAGGAAACCAGA	NA	False	NA	NA	False	NA	NA	NA	118034885	118035085	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_118034900_118035100
ES_00040646	chr4	+	213	1	Intergenic	novelGene_2870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTTTATTTTTAATCAT	NA	False	NA	NA	False	NA	NA	NA	119367288	119367501	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_119367300_119367500
ES_00040647	chr4	+	235	1	Intergenic	novelGene_2871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	212	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGAGGCCTATGATGGC	NA	False	NA	NA	False	NA	NA	NA	119906586	119906821	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_119906600_119906800
ES_00040648	chr4	+	206	1	Intergenic	novelGene_2873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATTTTTAAGAGTTCTT	995	False	NA	NA	False	NA	NA	NA	120855852	120856058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_120855900_120856100
ES_00040649	chr4	+	275	1	Intergenic	novelGene_2874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCTTTTATAATTGTTA	NA	False	NA	NA	False	NA	NA	NA	121765297	121765572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_121765300_121765600
ES_00040650	chr4	+	258	1	Intergenic	novelGene_2875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTCTACAAAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	122158279	122158537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122158300_122158500
ES_00040651	chr4	+	818	1	Intergenic	novelGene_2876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	122234867	122235685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122234900_122235700
ES_00040652	chr4	+	285	1	Intergenic	novelGene_2878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTTCAAAAAAAAAAAAAA	1445	False	NA	NA	False	NA	NA	NA	122887710	122887995	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122887700_122888000
ES_00040653	chr4	+	376	1	Intergenic	novelGene_2881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCTCTATTTTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	122952546	122952922	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122952500_122952900
ES_00040655	chr4	+	871	1	Intergenic	novelGene_2883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	536	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATCAAACAAACCCCA	NA	False	NA	NA	False	NA	NA	NA	123272915	123273786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123272900_123273800
ES_00040656	chr4	+	324	1	Intergenic	novelGene_2884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATACCTATGTAATACA	NA	False	NA	NA	False	NA	NA	NA	123340080	123340404	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123340100_123340400
ES_00040657	chr4	+	243	1	Intergenic	novelGene_2885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCACTCGGGAGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	123397744	123397987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123397700_123398000
ES_00040658	chr4	+	277	1	Intergenic	novelGene_2887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2753	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTAGCCATCTTAAAGC	NA	False	NA	NA	False	NA	NA	NA	123472861	123473138	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123472900_123473100
ES_00040659	chr4	+	254	1	Intergenic	novelGene_2892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGCTAATTTTAACTTG	NA	False	NA	NA	False	NA	NA	NA	124372719	124372973	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_124372700_124373000
ES_00040660	chr4	+	231	1	Intergenic	novelGene_2893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAGACAGGCTCTTACT	NA	False	NA	NA	False	NA	NA	NA	124656241	124656472	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_124656200_124656500
ES_00040661	chr4	+	209	1	Intergenic	novelGene_2895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTATGCACACGAATGT	NA	False	NA	NA	False	AATAAA	-11	NA	124766016	124766225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_124766000_124766200
ES_00040662	chr4	+	205	1	Intergenic	novelGene_2896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGCCTCAATCCAGAGAG	4417	False	NA	NA	False	AAAAAG	-3	NA	125449773	125449978	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_125449800_125450000
ES_00040663	chr4	+	206	1	Intergenic	novelGene_2897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATCTGCTTTCAATATAAA	9054	False	NA	NA	False	AAAAAG	-5	NA	125499750	125499956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_125499800_125500000
ES_00040664	chr4	+	281	1	Intergenic	novelGene_2899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATCTCTTTTATGATTA	NA	False	NA	NA	False	NA	NA	NA	125502457	125502738	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_125502500_125502700
ES_00040665	chr4	+	243	1	Intergenic	novelGene_2900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAATGGTTCTCAACCTT	NA	False	NA	NA	False	NA	NA	NA	125940071	125940314	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_125940100_125940300
ES_00040666	chr4	+	209	1	Intergenic	novelGene_2901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTGGAATTTGTGTT	NA	False	NA	NA	False	AAGAAA	-10	NA	126116734	126116943	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126116700_126116900
ES_00040668	chr4	+	218	1	Intergenic	novelGene_2906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTTTCTTAGTGCCCTC	2823	False	NA	NA	False	NA	NA	NA	126498671	126498889	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126498700_126498900
ES_00040670	chr4	+	215	1	Intergenic	novelGene_2916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAAATTTTTGTAGGAT	NA	False	NA	NA	False	NA	NA	NA	126992611	126992826	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126992600_126992800
ES_00040671	chr4	+	217	1	Intergenic	novelGene_2918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATCTATTGGTCAATAAC	NA	False	NA	NA	False	AAAAAG	-11	NA	127343300	127343517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_127343300_127343500
ES_00040672	chr4	+	213	1	Intergenic	novelGene_2919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCCTGGATGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	128505767	128505980	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_128505800_128506000
ES_00040674	chr4	+	221	1	Intergenic	novelGene_2921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGAAGGTTTTATGAGCT	1400	False	NA	NA	False	NA	NA	NA	128963998	128964219	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_128964000_128964200
ES_00040675	chr4	+	209	1	Intergenic	novelGene_2923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGGAGGACAGTCCTTTA	3365	False	NA	NA	False	NA	NA	NA	128996678	128996887	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_128996700_128996900
ES_00040676	chr4	+	216	1	Intergenic	novelGene_2924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGCTGGCGAGATGGC	5254	False	NA	NA	False	NA	NA	NA	129040915	129041131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129040900_129041100
ES_00040677	chr4	+	401	1	Intergenic	novelGene_2925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATAAATAAATTAAAAAA	699	False	NA	NA	False	NA	NA	NA	129072862	129073263	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129072900_129073300
ES_00040678	chr4	+	203	1	Intergenic	novelGene_2927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTGGACAACTTAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	129281077	129281280	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129281100_129281300
ES_00040681	chr4	+	219	1	Intergenic	novelGene_2935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGGACAGATTTTAATGA	7760	False	NA	NA	False	NA	NA	NA	129835059	129835278	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129835100_129835300
ES_00040682	chr4	+	238	1	Intergenic	novelGene_2943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAAAGAAAAG	NA	False	NA	NA	False	AATGAA	-23	NA	130865811	130866049	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_130865800_130866000
ES_00040683	chr4	+	206	1	Intergenic	novelGene_2945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGCACCTATTCTTATAA	NA	False	NA	NA	False	NA	NA	NA	131625446	131625652	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_131625400_131625700
ES_00040684	chr4	+	225	1	Intergenic	novelGene_2946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2739	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTTTGAAACAGGGTT	NA	False	NA	NA	False	NA	NA	NA	131834584	131834809	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_131834600_131834800
ES_00040686	chr4	+	221	1	Intergenic	novelGene_2951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATACACTAGCATTACCTG	NA	False	NA	NA	False	NA	NA	NA	132443294	132443515	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_132443300_132443500
ES_00040688	chr4	+	306	1	Intergenic	novelGene_2960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	425	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTATTTGTATGAGTC	NA	False	NA	NA	False	NA	NA	NA	133292369	133292675	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133292400_133292700
ES_00040689	chr4	+	215	1	Intergenic	novelGene_2961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCGAGACTTCTCT	NA	False	NA	NA	False	NA	NA	NA	133301051	133301266	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133301100_133301300
ES_00040692	chr4	+	967	1	Intergenic	novelGene_2972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAATTCAAAGGTTTAG	NA	False	NA	NA	False	NA	NA	NA	137110663	137111630	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137110700_137111600
ES_00040695	chr4	+	380	1	Intergenic	novelGene_2980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTAATGACTG	NA	False	NA	NA	False	NA	NA	NA	137849121	137849501	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137849100_137849500
ES_00040696	chr4	+	209	1	Intergenic	novelGene_2981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATCCTTTCCTAACTAG	NA	False	NA	NA	False	AAAAAG	-6	NA	137855504	137855713	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137855500_137855700
ES_00040697	chr4	+	208	1	Intergenic	novelGene_2982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCGATAATAATAATAAATA	NA	False	NA	35	True	NA	NA	NA	138551716	138551924	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_138551700_138551900
ES_00040698	chr4	+	264	1	Intergenic	novelGene_2985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	923	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCCCCCTCAGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	139072243	139072507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_139072200_139072500
ES_00040699	chr4	+	205	1	Intergenic	novelGene_2986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTTCTCTTATAAACTGT	5628	False	NA	NA	False	NA	NA	NA	139267659	139267864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_139267700_139267900
ES_00040703	chr4	+	202	1	Intergenic	novelGene_2988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGCGGAGGCATGATT	NA	False	NA	NA	False	NA	NA	NA	140681933	140682135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_140681900_140682100
ES_00040704	chr4	+	214	1	Intergenic	novelGene_2989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTTGAGCCATCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	140823895	140824109	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_140823900_140824100
ES_00040705	chr4	+	219	1	Intergenic	novelGene_2990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTAGATTCTTAAGGTAGA	7128	False	NA	NA	False	NA	NA	NA	141229849	141230068	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_141229800_141230100
ES_00040706	chr4	+	201	1	Intergenic	novelGene_2994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGGGCATGGTGGCGCA	9230	False	NA	NA	False	NA	NA	NA	141453915	141454116	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_141453900_141454100
ES_00040707	chr4	+	221	1	Intergenic	novelGene_2996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCACTGGGATTTTTG	NA	False	NA	NA	False	AATAAA	-31	NA	142944663	142944884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_142944700_142944900
ES_00040708	chr4	+	1047	1	Intergenic	novelGene_3003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTATTTGTATTATCTGT	NA	False	NA	NA	False	NA	NA	NA	145316566	145317613	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_145316600_145317600
ES_00040712	chr4	+	687	1	Intergenic	novelGene_3032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGAAGACATGGTCTT	NA	False	NA	NA	False	NA	NA	NA	146834120	146834807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146834100_146834800
ES_00040713	chr4	+	789	1	Intergenic	novelGene_3035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTAAAAAATATTCATA	1311	False	NA	NA	False	NA	NA	NA	147014497	147015286	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_147014500_147015300
ES_00040714	chr4	+	209	1	Intergenic	novelGene_3037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGACAAGATTCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	147473240	147473449	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_147473200_147473400
ES_00040715	chr4	+	217	1	Intergenic	novelGene_3038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTAACATCCTAAAACTA	NA	False	NA	NA	False	NA	NA	NA	147791368	147791585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_147791400_147791600
ES_00040716	chr4	+	218	1	Intergenic	novelGene_3039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAATAAATCTGCAA	NA	False	NA	NA	False	NA	NA	NA	147900568	147900786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_147900600_147900800
ES_00040718	chr4	+	1420	1	Intergenic	novelGene_3043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	148682873	148684293	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_148682900_148684300
ES_00040719	chr4	+	210	1	Intergenic	novelGene_3044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATGGACTTCTTTCTCA	2048	False	NA	NA	False	NA	NA	NA	148953181	148953391	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_148953200_148953400
ES_00040722	chr4	+	952	1	Intergenic	novelGene_3047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTGAGTGATGCTTCA	NA	False	NA	NA	False	NA	NA	NA	149581741	149582693	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_149581700_149582700
ES_00040723	chr4	+	456	1	Intergenic	novelGene_3048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGTCAGCATTCCCAC	NA	False	NA	NA	False	NA	NA	NA	149584078	149584534	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_149584100_149584500
ES_00040728	chr4	+	201	1	Intergenic	novelGene_3052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTCTTTCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	150358259	150358460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_150358300_150358500
ES_00040729	chr4	+	228	1	Intergenic	novelGene_3054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTATAGGGCCAGAAAG	NA	False	NA	NA	False	GGGGCT	-29	NA	154280625	154280853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_154280600_154280900
ES_00040731	chr4	+	238	1	Intergenic	novelGene_3056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATGTTTTTAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	155341430	155341668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_155341400_155341700
ES_00040736	chr4	+	778	1	Intergenic	novelGene_3057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAGAAATAAGTTATG	3803	False	NA	NA	False	CATAAA	-22	NA	156189986	156190764	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_156190000_156190800
ES_00040737	chr4	+	209	1	Intergenic	novelGene_3058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAACGGATTTAAAAACA	4730	False	NA	NA	False	NA	NA	NA	156190913	156191122	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_156190900_156191100
ES_00040742	chr4	+	2821	12	NIC	ENSMUSG00000042228.15	novel	3463	13	NA	NA	36	-544	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	13.7696516217777	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTAAGATTTTTGTCT	44	False	NA	11	True	AATACA	-8	NA	3678165	3791068	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_3678365_3738724_3738862_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
ES_00040746	chr4	+	1289	1	Genic_Genomic	ENSMUSG00000083068.2	novel	NA	NA	NA	NA	-715	-543	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTACTGCTAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	8117904	8119193	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_8117900_8119200
ES_00040747	chr4	+	5499	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	-95	0	-95	0	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	1142	False	NA	16	True	AATAAA	-17	NA	11156335	11174379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
ES_00040748	chr4	+	3009	12	FSM	ENSMUSG00000028212.17	ENSMUST00000170901.8	3006	12	-3	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	77.194291742887	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACTACAGAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	11191350	11204675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11191545_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ES_00040750	chr4	+	659	4	FSM	ENSMUSG00000078773.12	ENSMUST00000108306.9	652	4	-7	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	82.7056359761668	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACGTACGATACAGGTA	-5	True	NA	NA	False	GATAAA	-13	NA	11558941	11578957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633
ES_00040751	chr4	+	4503	13	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	0	-2	intron_retention	FALSE	canonical	3	84	junction_12	72.1646939684189	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCTTGTGTGTATCCTT	-5	True	NA	17	True	AGTAAA	-14	NA	11558941	11615803	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11615442
ES_00040752	chr4	+	4705	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	0	-1	intron_retention	FALSE	canonical	3	154	junction_7	65.0873786836229	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTGTGTGTATCCTTA	-5	True	NA	18	True	AGTAAA	-15	NA	11558941	11615804	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11612617_11612819_11615442
ES_00040753	chr4	+	2435	13	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	86.901724506607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	-3	True	NA	19	True	AGTAAA	-16	NA	11558943	11615805	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11615442
ES_00040754	chr4	+	4436	2	FSM	ENSMUSG00000094595.2	ENSMUST00000180239.2	4358	2	0	-78	0	78	multi-exon	FALSE	canonical	3	26	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAATTCTGCCACATTCT	4	True	NA	NA	False	AGTAAA	-43	NA	11579664	11587669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11580108_11583676
ES_00040756	chr4	+	3594	6	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-4798	-1	intron_retention	FALSE	canonical	3	207	junction_3	55.5280109494298	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTGTGTGTATCCTTA	90	False	NA	18	True	AGTAAA	-15	NA	11604576	11615804	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11612617_11612819_11615442
ES_00040757	chr4	+	515	2	FSM	ENSMUSG00000085614.2	ENSMUST00000154194.2	535	2	20	0	11	0	multi-exon	FALSE	canonical	3	3	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCTTGCTTCAGAACAA	682	False	NA	NA	False	AATAAA	-15	NA	11966584	11994280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11966684_11993864
ES_00040759	chr4	+	3327	4	FSM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	21.6692306175267	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	56	False	NA	-16	True	NA	NA	NA	12089440	12096243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12089524_12089662_12089728_12092522_12092573_12093114
ES_00040760	chr4	+	2983	4	NNC	ENSMUSG00000046667.15	novel	2949	4	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	21.6999743983464	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	31	False	NA	NA	False	AATAAA	-18	NA	12140331	12146731	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_12140402_12140540_12140674_12143409_12143460_12144001
ES_00040761	chr4	+	1119	1	FSM	ENSMUSG00000060989.9	ENSMUST00000125165.2	1119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	607	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGCTAC	28	False	NA	NA	False	NA	NA	NA	12232832	12233951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12232800_12234000
ES_00040762	chr4	+	2729	1	Intergenic	novelGene_2707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAACTTCGGAGCCTC	1689	False	NA	NA	False	ATTAAA	-36	NA	12235317	12238046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_12235300_12238000
ES_00040763	chr4	+	3298	5	FSM	ENSMUSG00000055963.13	ENSMUST00000183345.2	3545	5	5	242	5	-242	multi-exon	FALSE	canonical	2	7	junction_2	1.87082869338697	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCTTGTCTTTCAACTT	2	True	NA	NA	False	AATATA	-3	NA	12906862	12983311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_12906939_12917915_12918066_12962944_12963024_12974729_12974816_12980404
ES_00040765	chr4	+	2394	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	53.2213825032341	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	12	True	NA	9	True	AATAAA	-15	NA	15957981	15992589	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964328_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
ES_00040767	chr4	+	218	1	Intergenic	novelGene_2719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTTACTCTTACAGAAG	3343	False	NA	NA	False	NA	NA	NA	21753048	21753266	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_21753000_21753300
ES_00040768	chr4	+	590	5	FSM	ENSMUSG00000040455.18	ENSMUST00000125262.2	592	5	2	0	2	0	multi-exon	FALSE	canonical	3	25	junction_1	2.77263412660235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTTGCCTGATAATC	-17	True	NA	NA	False	ATTAAA	-11	NA	21776262	21784840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692
ES_00040769	chr4	+	5038	10	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	402	junction_3	31.0876895964374	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTGGCTATGATACATA	5	True	NA	16	True	AATAAA	-16	NA	21848063	21876473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
ES_00040770	chr4	+	6318	6	FSM	ENSMUSG00000028246.14	ENSMUST00000029908.8	2627	6	-77	-3614	-75	1526	multi-exon	FALSE	canonical	2	5	junction_3	4.02988833592198	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGTAGGGATCAGCTCA	121	False	NA	NA	False	AATAAA	-15	NA	21931253	21998365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21958443_21958668_21982385_21982503_21993297
ES_00040771	chr4	+	2570	10	FSM	ENSMUSG00000040410.15	ENSMUST00000184582.2	2570	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	25.9019995414816	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTTTGCACATCTTTC	34	True	NA	NA	False	AATAAA	-28	NA	22357615	22434075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433145_22433259_22433566
ES_00040774	chr4	+	3603	19	FSM	ENSMUSG00000045751.17	ENSMUST00000154349.9	3603	19	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_10	38.2571303771122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTCTCTGTGAATATTT	8695	False	NA	NA	False	ATTAAA	-22	NA	24505161	24602949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580050_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
ES_00040775	chr4	+	2358	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	11	True	NA	14	True	AATAAA	-27	NA	24898130	24903505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24898677_24901693
ES_00040776	chr4	+	673	4	FSM	ENSMUSG00000028261.14	ENSMUST00000151249.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	218.397700435594	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGCACATTAGCCCA	56	False	NA	-6	True	AATAAA	-7	NA	24898175	24903485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24898303_24898572_24898677_24901693_24901782_24903131
ES_00040777	chr4	+	1256	4	ISM	ENSMUSG00000028289.13	ENSMUST00000149030.8	3187	5	-209	3088	-14	-3088	5prime_fragment	FALSE	canonical	3	11	junction_3	6.84754619472471	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTTCAAGCCACAGAAAG	39	False	NA	NA	False	NA	NA	NA	28813116	28870713	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556
ES_00040778	chr4	+	615	5	FSM	ENSMUSG00000028289.13	ENSMUST00000129029.8	737	5	0	122	0	-122	multi-exon	FALSE	canonical	2	3	junction_3	7.11951543294907	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTGTTTGGCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	28871840	28943378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_28871997_28935703_28935829_28938595_28938765_28942585_28942695_28943322
ES_00040782	chr4	+	316	5	FSM	ENSMUSG00000028282.13	ENSMUST00000124278.8	300	5	-16	0	-16	0	multi-exon	FALSE	canonical	3	150	junction_1	46.6549836566256	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGAATATGGGAAATGTC	-14	True	NA	NA	False	AAGAAA	-42	NA	32615434	32631810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805
ES_00040783	chr4	+	6499	10	NIC	ENSMUSG00000028282.13	novel	6557	11	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	77.5370878999205	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTAGTATGCTTCTT	-1	True	NA	7	True	AATAAA	-20	NA	32615447	32653265	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_32615493_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ES_00040785	chr4	+	17950	102	FSM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	20	0	20	0	multi-exon	TRUE	canonical	2	6	junction_33	39.2417570768759	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGGTTTACTTTGGTTTG	2	True	NA	20	True	ATTAAA	-23	NA	32657138	32775207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32657353_32662832_32663060_32666392_32666618_32667090_32667199_32667271_32667465_32668798_32669042_32669462_32669595_32670566_32670671_32671515_32671631_32672830_32673016_32673953_32674036_32674930_32675027_32676741_32676855_32678298_32678448_32679530_32679592_32683542_32683755_32684638_32684740_32685658_32685804_32686327_32686425_32689482_32689597_32691179_32691328_32691713_32691825_32693439_32693592_32694493_32694673_32695356_32695566_32696221_32696369_32698770_32698913_32699216_32699352_32699429_32699569_32700074_32700214_32700347_32700476_32701701_32701847_32704607_32704738_32707420_32707640_32708402_32708601_32709357_32709567_32710261_32710385_32711940_32712139_32713246_32713355_32713687_32713877_32715686_32715777_32715861_32716126_32716245_32716508_32718314_32718475_32719166_32719284_32720733_32720943_32722273_32722423_32722889_32723102_32723480_32723702_32725018_32725133_32725832_32725966_32726825_32726942_32728041_32728176_32729629_32729788_32729950_32730072_32730279_32730491_32730755_32730985_32731208_32731330_32731914_32732086_32732745_32732961_32733336_32733725_32734341_32734452_32735192_32735896_32738608_32738771_32738902_32739177_32739743_32739980_32740378_32740475_32741005_32741101_32741322_32741445_32741775_32741923_32742455_32742566_32743105_32743180_32743641_32743841_32744541_32744705_32745581_32745729_32746440_32746568_32747843_32747950_32748574_32748691_32749552_32750036_32750249_32750477_32750912_32751069_32751211_32751394_32752030_32752193_32754429_32754568_32756376_32756516_32757736_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ES_00040789	chr4	+	784	2	FSM	ENSMUSG00000045854.5	ENSMUST00000135833.2	889	2	105	0	102	0	multi-exon	FALSE	canonical	3	270	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAACCACT	116	False	NA	NA	False	NA	NA	NA	32800383	32801559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_32800751_32801142
ES_00040791	chr4	+	1628	6	NNC	ENSMUSG00000028291.8	novel	1397	5	NA	NA	-363	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	94	junction_1	274.408746216297	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGTTTCCGAATTG	NA	False	NA	13	True	AATAAA	-14	NA	34550573	34566908	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_34550775_34550906_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
ES_00040794	chr4	+	1842	20	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_12	155.081928128757	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATGTGTGTAGTAGTGT	5	True	NA	7	True	AATAGA	-22	NA	34614973	34660162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652135_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ES_00040795	chr4	+	3600	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTATTGCTATTTCCC	7	False	NA	NA	False	AATAAA	-17	NA	41135742	41193380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
ES_00040796	chr4	+	1314	11	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	251	-8	combination_of_known_junctions	FALSE	canonical	2	43	junction_2	83.1877394812481	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTGACACCAGAGGAGT	11	False	NA	24	True	AATAAA	-25	NA	41755503	41758687	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ES_00040798	chr4	+	1768	13	FSM	ENSMUSG00000073889.11	ENSMUST00000108042.3	1768	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.0714111667687	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	1803	False	NA	4	True	AATAAA	-20	NA	41762308	41769474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41762424_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
ES_00040800	chr4	+	5503	39	NIC	ENSMUSG00000028456.19	novel	5034	40	NA	NA	-16	258	combination_of_known_junctions	TRUE	canonical	3	7	junction_23	6.06086396664375	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACCTGGCTGACTCCAT	NA	False	NA	NA	False	NA	NA	NA	43058936	43263991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743_43165979_43180327_43180643_43182768_43182860_43230117_43230165_43232529_43232609_43234665_43234741_43235181_43235402_43236919_43237148_43237696_43237839_43239296_43239467_43239845_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249459_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
ES_00040802	chr4	+	6403	40	FSM	ENSMUSG00000028456.19	ENSMUST00000107952.9	5037	40	-104	-1262	0	13	multi-exon	FALSE	canonical	2	3	junction_8	7.18900468056413	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTCTGTGAATATGTGA	18	False	NA	25	True	AATAAA	-27	NA	43058968	43264884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43161442_43161479_43165743_43165979_43180327_43180643_43182768_43182860_43230117_43230165_43232529_43232609_43234665_43234741_43235181_43235402_43236919_43237148_43237696_43237839_43239296_43239467_43239845_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249456_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
ES_00040803	chr4	+	863	4	FSM	ENSMUSG00000028461.13	ENSMUST00000137113.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_1	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAATGGGGAACAACCAC	29	True	NA	-36	True	GGGGCT	-40	NA	43493416	43495871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341
ES_00040804	chr4	+	1598	10	NNC	ENSMUSG00000028466.16	novel	1884	9	NA	NA	-3481	65	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_1	30.2426401617091	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAGCTGGCCTTTGCTCA	2927	False	NA	9	True	AATAAA	-11	NA	43558850	43566862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_43558890_43562458_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ES_00040805	chr4	+	5624	9	FSM	ENSMUSG00000028468.16	ENSMUST00000030190.9	1292	9	25	-4357	0	0	multi-exon	FALSE	canonical	1	4	junction_8	1.21834929310112	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAAGTGTCTAATTTAAA	35	False	NA	10	True	AATAAA	-14	NA	43578982	43587487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43579008_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859
ES_00040806	chr4	+	323	3	FSM	ENSMUSG00000028469.16	ENSMUST00000151603.2	347	3	118	-94	118	15	multi-exon	FALSE	canonical	2	3	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTGATTCTCACCTGG	NA	False	NA	NA	False	NA	NA	NA	43648122	43650324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43648201_43648346_43648416_43650148
ES_00040807	chr4	+	5234	13	FSM	ENSMUSG00000078716.11	ENSMUST00000107866.9	5102	13	-137	5	82	-5	multi-exon	FALSE	canonical	2	4	junction_9	2.419538523493	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGCTACTCCTTCCCT	60	False	NA	NA	False	NA	NA	NA	43669368	43692663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43670035_43673899_43674090_43674436_43674645_43680658_43680793_43681045_43681315_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690026
ES_00040808	chr4	+	692	1	FSM	ENSMUSG00000071001.5	ENSMUST00000095109.5	1452	1	231	529	231	-529	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGAACTGGTTCTTG	124	False	NA	NA	False	AATAAA	-17	NA	43727418	43728110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43727400_43728100
ES_00040811	chr4	+	1588	4	NNC	ENSMUSG00000035649.18	novel	586	4	NA	NA	944	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	62.1128006130781	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	44924061	44932203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_44924268_44925974_44926071_44929117_44929236_44931035
ES_00040812	chr4	+	1494	9	NIC	ENSMUSG00000035601.10	novel	983	8	NA	NA	-664	340	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	97.4461389691762	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGTGCCGATTTCC	2587	False	NA	5	True	CATAAA	-14	NA	45299749	45315482	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_45299898_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ES_00040814	chr4	+	5735	17	FSM	ENSMUSG00000028344.13	ENSMUST00000030029.10	5633	17	29	-131	5	131	multi-exon	FALSE	canonical	1	2	junction_6	2.59506743650334	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGAATTATCTGCTAC	7	True	NA	NA	False	NA	NA	NA	48279830	48432085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_48279976_48283225_48283356_48307682_48307850_48382104_48382279_48385104_48385273_48389958_48390140_48392583_48392694_48396234_48396407_48397504_48397661_48398049_48398280_48402832_48402940_48407597_48407811_48415905_48416199_48421446_48422150_48425994_48426225_48427033_48427109_48429604
ES_00040816	chr4	+	1938	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	-50	-299	-50	298	multi-exon	FALSE	canonical	3	23	junction_1	140.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAAAAGGGTTTTTTTTT	NA	False	NA	NA	False	CATAAA	-44	NA	48539884	48562217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_48539998_48552379_48552831_48560843
ES_00040817	chr4	+	2039	4	NIC	ENSMUSG00000039693.12	novel	1597	3	NA	NA	-68	298	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	134.127634073752	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAAAAGGGTTTTTTTTT	-30	True	NA	NA	False	CATAAA	-44	NA	48540430	48562217	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_48540569_48549921_48549998_48552379_48552831_48560843
ES_00040822	chr4	+	800	1	FSM	ENSMUSG00000081975.2	ENSMUST00000120435.2	630	1	-35	-135	-35	135	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGTTGCGAGATGAGGA	6841	False	NA	19	True	AATAAA	-34	NA	52821452	52822252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_52821500_52822300
ES_00040823	chr4	+	342	2	Intergenic	novelGene_2779	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGACAGACTGAGCTATT	NA	False	NA	8	True	AATAAA	-20	NA	53352880	53356057	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_53353067_53355901
ES_00040827	chr4	+	4053	7	ISM	ENSMUSG00000060206.12	ENSMUST00000079605.5	4684	11	11858	-2233	11858	0	3prime_fragment	FALSE	canonical	3	22	junction_1	5.25991127935317	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGCATCTGTTAAGT	NA	False	NA	10	True	AATAAA	-19	NA	55023337	55083563	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_55023607_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
ES_00040828	chr4	+	335	1	FSM	ENSMUSG00000081504.4	ENSMUST00000121282.2	480	1	99	46	99	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	520	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGGCCCCCAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	55254838	55255173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_55254800_55255200
ES_00040829	chr4	+	776	6	FSM	ENSMUSG00000028426.11	ENSMUST00000156263.2	776	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	482.188925629778	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAAGTGTGTTTTACTT	29	False	NA	NA	False	NA	NA	NA	55350089	55381116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_55350251_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988
ES_00040830	chr4	+	3080	11	NNC	ENSMUSG00000028426.11	novel	3810	10	NA	NA	0	77233	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	390.427009823859	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAGGGACAGACACA	29	False	NA	NA	False	NA	NA	NA	55350089	55469470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883_55391524_55469439
ES_00040831	chr4	+	4373	6	FSM	ENSMUSG00000038827.12	ENSMUST00000131520.8	4360	6	-13	0	-6	0	multi-exon	FALSE	canonical	3	7	junction_1	52.8189359983709	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	-10	True	NA	13	True	AATAAA	-22	NA	56802338	56809601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_56802727_56803507_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ES_00040832	chr4	+	6856	4	NIC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	30	-26	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.29983164553722	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATTAAAACTCAACGTGT	13	False	NA	1	True	NA	NA	NA	57782209	57896956	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_57782323_57854561_57857038_57883023_57883203_57892868
ES_00040833	chr4	+	4556	3	NNC	ENSMUSG00000038729.25	novel	6650	3	NA	NA	0	-2120	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	7	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTTTATGTTATTA	-6	True	NA	21	True	ATTAAA	-21	NA	57845246	57894862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_57845333_57854561_57857038_57892868
ES_00040834	chr4	+	214	1	FSM	ENSMUSG00000083145.2	ENSMUST00000118040.2	783	1	10	559	10	-559	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCAGCCTCCTGCATCA	NA	False	NA	NA	False	AATGAA	-14	NA	58611067	58611281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_58611100_58611300
ES_00040835	chr4	+	4387	5	FSM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	-48	-1946	-27	113	multi-exon	FALSE	canonical	2	4	junction_1	45.2189119727576	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCACAGGTTCAAGGTAA	-24	True	NA	NA	False	NA	NA	NA	59003144	59025686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_59003558_59013631_59013856_59017669_59017823_59020058_59020530_59022560
ES_00040837	chr4	+	3737	10	NNC	ENSMUSG00000028381.9	novel	4012	9	NA	NA	0	39743	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	82.8462803802289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAGGAAAGAAAGAAA	60	False	NA	NA	False	NA	NA	NA	59189557	59262576	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222_59222826_59262542
ES_00040839	chr4	+	3699	10	NNC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	-162	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	20.5414365925061	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63476855	63504594	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_63476967_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
ES_00040842	chr4	+	219	1	FSM	ENSMUSG00000083767.2	ENSMUST00000118689.2	1556	1	1488	-151	1488	151	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCTCAGCTGCTCCTGA	NA	False	NA	NA	False	NA	NA	NA	74147921	74148140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_74147900_74148100
ES_00040843	chr4	+	642	2	Antisense	novelGene_ENSMUSG00000028399.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTCATTAATGTTTAGC	NA	False	NA	NA	False	AATAAA	-11	NA	77228986	77232609	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_77229411_77232391
ES_00040844	chr4	+	910	5	FSM	ENSMUSG00000038070.16	ENSMUST00000102819.10	2239	5	0	1329	0	-1329	multi-exon	FALSE	canonical	0	0	junction_2	4.02336923485777	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGGGCGGACCTGTGTC	NA	False	NA	NA	False	AGTAAA	-2	NA	84802640	84875416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_84803062_84806879_84806969_84865794_84865880_84874512_84874648_84875236
ES_00040845	chr4	+	1487	5	FSM	ENSMUSG00000028488.16	ENSMUST00000107184.8	671	5	-518	-298	-109	298	multi-exon	FALSE	canonical	3	246	junction_4	9.63068014212911	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTCTATCAGTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	85123253	85296226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630
ES_00040846	chr4	+	2694	10	NNC	ENSMUSG00000028488.16	novel	2822	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	85.3117738968784	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123771	85307617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790_85306749_85306782
ES_00040847	chr4	+	2628	11	NNC	ENSMUSG00000028488.16	novel	2822	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	107.706824296328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123771	85307617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790_85306616_85306681_85306749_85306782
ES_00040850	chr4	+	1959	17	NNC	ENSMUSG00000028573.19	novel	1891	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	9.54082510844843	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445753	95815176	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_95445829_95454054_95454133_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ES_00040852	chr4	+	1637	8	FSM	ENSMUSG00000061859.18	ENSMUST00000142103.8	1637	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_7	3.53986048381825	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTCTTTTAAATTCCCT	NA	False	NA	NA	False	AATAAA	-20	NA	98329312	98385870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_98329380_98331987_98332045_98344366_98344502_98353270_98353433_98357709_98357842_98379774_98379985_98383261_98383376_98385110
ES_00040854	chr4	+	3619	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-296	8	intron_retention	FALSE	canonical	3	18	junction_1	189.677504084052	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98614674	98626725	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_98615239_98615631_98615708_98621379_98622316_98624682
ES_00040856	chr4	+	3072	6	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	188.875196889375	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98615029	98626725	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682_98624924_98624950_98625038_98625061
ES_00040858	chr4	+	4186	6	FSM	ENSMUSG00000028527.19	ENSMUST00000102780.8	4186	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	98.0848612172133	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276473	101324192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_101276568_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ES_00040859	chr4	+	983	3	NNC	ENSMUSG00000028527.19	novel	4360	6	NA	NA	2	-37887	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	4.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAAGACTTCCGTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	101276517	101279891	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_101276754_101276925_101277163_101279381
ES_00040861	chr4	+	274	3	Intergenic	novelGene_2829	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAAGTCTCATAAGATGC	NA	False	NA	NA	False	NA	NA	NA	101770499	101815775	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_101770667_101788838_101788885_101815714
ES_00040862	chr4	+	1421	3	FSM	ENSMUSG00000070890.4	ENSMUST00000052027.8	1452	3	0	31	0	-31	multi-exon	TRUE	canonical	1	3	junction_2	2.5	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTTTGTTGGCAGCAAA	NA	False	NA	NA	False	NA	NA	NA	101797603	101800349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_101797891_101798317_101798903_101799800
ES_00040865	chr4	+	4703	14	FSM	ENSMUSG00000028522.17	ENSMUST00000030247.11	4703	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	43.0041968503722	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTGTGTGGTGTCTA	3682	False	NA	12	True	ATTAAA	-13	NA	102972756	103022946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ES_00040869	chr4	+	1928	9	NNC	ENSMUSG00000035069.4	novel	421	4	NA	NA	2431	-11	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	30.59998978758	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTCATCTGTCCTTGCC	2473	False	NA	5	True	AATAAA	-17	NA	103173439	103223629	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_103173536_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
ES_00040870	chr4	+	1128	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGAGCAGGTGCCAG	NA	False	NA	NA	False	NA	NA	NA	103420598	103421726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_103420600_103421700
ES_00040871	chr4	+	1086	7	NIC	ENSMUSG00000028519.17	novel	974	6	NA	NA	-200	0	intron_retention	FALSE	canonical	1	4	junction_1	16.3579746097533	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224586	104537579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_104224667_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
ES_00040872	chr4	+	1674	6	ISM	ENSMUSG00000028519.17	ENSMUST00000146078.8	2462	15	-42	61414	-42	1	5prime_fragment	FALSE	canonical	3	42	junction_1	2.63818119165458	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACTGTTGTAACTTTC	NA	False	NA	9	True	AATAAA	-16	NA	104224744	104537580	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649
ES_00040875	chr4	+	1947	8	FSM	ENSMUSG00000034871.3	ENSMUST00000047620.3	1923	8	-24	0	-24	0	multi-exon	FALSE	canonical	2	3	junction_2	2.64189171555813	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACTGTGTAAGACCTGGG	2089	False	NA	4	True	NA	NA	NA	106591061	106605489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_106591286_106592646_106592794_106599341_106599495_106600393_106600554_106602669_106602895_106603252_106603393_106604169_106604314_106604735
ES_00040878	chr4	+	2478	7	NIC	ENSMUSG00000028621.18	novel	5471	9	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	3.43592135468138	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTCAGGACACTTTGTT	961	False	NA	12	True	ATTAAA	-12	NA	106924214	106943019	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_106924239_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
ES_00040879	chr4	+	1268	6	FSM	ENSMUSG00000028618.12	ENSMUST00000106753.3	1148	6	252	-372	53	74	multi-exon	FALSE	canonical	2	2	junction_1	650.179236826277	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGGCAGCTCGATCGA	NA	False	NA	89	True	NA	NA	NA	107035975	107058267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107036115_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ES_00040881	chr4	+	240	3	Intergenic	novelGene_2834	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTTTCTGACTAAAA	NA	False	NA	NA	False	NA	NA	NA	107287063	107289235	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_107287121_107288442_107288590_107289199
ES_00040882	chr4	+	4534	19	NIC	ENSMUSG00000028613.16	novel	4555	19	NA	NA	31	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_5	28.069633431658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATAGAATTTTCTT	NA	False	NA	7	True	AATAAA	-16	NA	107659391	107731094	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107703435_107703817_107704640_107704764_107707300_107707340_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ES_00040884	chr4	+	893	9	FSM	ENSMUSG00000028601.19	ENSMUST00000116307.8	893	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	263.258428165178	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGCTCACCTTGGCTAG	NA	False	NA	NA	False	NA	NA	NA	108022714	108036265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ES_00040885	chr4	+	202	1	Intergenic	novelGene_2838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTACTTTTATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	108181662	108181864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108181700_108181900
ES_00040888	chr4	+	5868	30	NNC	ENSMUSG00000034610.15	novel	5865	30	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_25	25.401508283324	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTAATTCATCTGGTA	NA	False	NA	21	True	AATAAA	-21	NA	108317203	108416618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406425_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ES_00040889	chr4	+	5850	30	ISM	ENSMUSG00000034610.15	ENSMUST00000043368.12	6054	31	581	0	-3	0	3prime_fragment	FALSE	canonical	3	91	junction_25	21.0061991869214	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATTTGGTTAATTCAT	NA	False	NA	15	True	AATAAA	-15	NA	108317203	108416612	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ES_00040890	chr4	+	5840	30	NNC	ENSMUSG00000034610.15	novel	6054	31	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_26	29.4115898435034	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTAATTCATCTGGTA	NA	False	NA	21	True	AATAAA	-21	NA	108317216	108416618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407912_108408011_108412578_108413027_108414518_108414672_108415911
ES_00040893	chr4	+	430	4	FSM	ENSMUSG00000028582.15	ENSMUST00000143336.2	430	4	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	12.2292908852294	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTGGCTGGTCCTGGA	8429	False	NA	NA	False	NA	NA	NA	108487646	108490460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108487793_108488792_108488893_108489031_108489123_108490367
ES_00040894	chr4	+	5135	24	NIC	ENSMUSG00000028552.14	novel	5190	25	NA	NA	-16	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_18	39.762860387082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTATCTTGTCCTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	109137483	109245014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
ES_00040896	chr4	+	2413	11	FSM	ENSMUSG00000034401.17	ENSMUST00000122820.8	2415	11	2	0	2	0	multi-exon	FALSE	canonical	3	90	junction_2	11.3934191531779	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAGAAAAAGACAAAGC	NA	False	NA	NA	False	NA	NA	NA	111577208	111664251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127
ES_00040898	chr4	+	639	2	FSM	ENSMUSG00000028709.4	ENSMUST00000144839.2	634	2	-5	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCTAGCCAGGGAAGGT	NA	False	NA	NA	False	NA	NA	NA	115685288	115688908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_115685439_115688419
ES_00040899	chr4	+	2539	14	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	0	22510	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	48.1959756723102	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAAGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	115696419	115758957	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146_115736444_115758932
ES_00040900	chr4	+	526	2	FSM	ENSMUSG00000028703.15	ENSMUST00000134983.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGCTGTGAGCATGACC	NA	False	NA	NA	False	ATTAAA	-10	NA	115946678	115950506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_115946767_115950068
ES_00040901	chr4	+	4506	9	ISM	ENSMUSG00000028698.14	ENSMUST00000030464.14	5257	10	34505	0	34470	0	3prime_fragment	FALSE	canonical	3	5	junction_8	3.15238005322962	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTTTTGGTTTTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	116113362	116160253	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_116113474_116116741_116116841_116127984_116128166_116129935_116130062_116143252_116143396_116144019_116144197_116148871_116148947_116149293_116149465_116156830
ES_00040903	chr4	+	2859	9	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	-30	0	intron_retention	FALSE	canonical	3	19	junction_2	21.3351236227963	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5588	False	NA	11	True	AATAAA	-15	NA	116565737	116572296	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116571347_116572036
ES_00040904	chr4	+	1059	9	NIC	ENSMUSG00000028689.15	novel	1112	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	23.2671307857243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5655	False	NA	11	True	AATAAA	-15	NA	116565804	116572296	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_116565854_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ES_00040905	chr4	+	1666	16	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_15	52.9651457721648	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTGTGTGTGTGTATA	NA	False	NA	NA	False	AAGAAA	-22	NA	116664934	116675970	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116675766
ES_00040906	chr4	+	1931	14	FSM	ENSMUSG00000028687.18	ENSMUST00000124857.8	1931	14	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	30.7380611354533	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAACTTTCTGGGCTTTC	NA	False	NA	33	True	AATAAA	-23	NA	116664934	116676635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675480_116676451
ES_00040907	chr4	+	1483	14	FSM	ENSMUSG00000028687.18	ENSMUST00000155346.8	1483	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	50.6509110766964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGATTCCCTACCCAAAAT	3020	False	NA	-22	True	NA	NA	NA	116671515	116676580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116671634_116672760_116672910_116672995_116673036_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ES_00040908	chr4	+	1767	15	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	53.5691904294372	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	3024	False	NA	26	True	AATAAA	-16	NA	116671519	116676628	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673343_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ES_00040909	chr4	+	1597	3	FSM	ENSMUSG00000028681.12	ENSMUST00000123226.2	2293	3	-17	713	-17	5	multi-exon	FALSE	canonical	3	43	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGAGTTTTTCTTA	NA	False	NA	7	True	AATATA	-21	NA	116970603	116972585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116971352_116971439_116971540_116971836
ES_00040911	chr4	+	1362	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-28	-1	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	225.311693826574	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAGTGTGTCTGGAGCC	NA	False	NA	8	True	AATAAA	-15	NA	117407533	117531477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00040912	chr4	+	1348	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-20	-1	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_2	270.430097252506	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAGTGTGTCTGGAGCC	NA	False	NA	8	True	AATAAA	-15	NA	117407541	117531477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_117407560_117410164_117410241_117421823_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00040913	chr4	+	1700	9	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	22	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	252.197064564598	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAGTGTGTCTGGAGCC	NA	False	NA	8	True	AATAAA	-15	NA	117407583	117531477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_117407928_117410144_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ES_00040914	chr4	+	1366	1	FSM	ENSMUSG00000006395.17	ENSMUST00000179719.2	1296	1	-121	51	-112	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAGACATGCAGGTAA	NA	False	NA	NA	False	NA	NA	NA	118217074	118218440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_118217100_118218400
ES_00040915	chr4	+	789	6	FSM	ENSMUSG00000006392.17	ENSMUST00000130421.8	775	6	-14	0	5	0	multi-exon	FALSE	canonical	3	46	junction_3	246.799513775858	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCTCAGTGGAGTTCAG	NA	False	NA	NA	False	NA	NA	NA	118266538	118271030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_118266584_118268081_118268201_118268854_118269050_118269548_118269690_118269860_118269943_118270823
ES_00040916	chr4	+	474	3	Intergenic	novelGene_2866	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	6.5	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTTGTATAATGCTTC	NA	False	NA	NA	False	NA	NA	NA	118929495	118941593	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_118929554_118930792_118930857_118941241
ES_00040919	chr4	+	2790	15	NNC	ENSMUSG00000028641.17	novel	3188	15	NA	NA	-12	219	intron_retention	FALSE	canonical	3	34	junction_14	96.089244232343	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGATGGCAGCACATCAT	NA	False	NA	NA	False	NA	NA	NA	119090123	119105788	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_119090628_119092442_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098879_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105092
ES_00040920	chr4	+	2796	15	FSM	ENSMUSG00000028641.17	ENSMUST00000030393.13	3188	15	394	-2	379	2	multi-exon	FALSE	canonical	1	2	junction_7	108.340567524028	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGTTTGTGTATCT	NA	False	NA	6	True	NA	NA	NA	119090529	119106174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_119090628_119092442_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098858_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105087
ES_00040921	chr4	+	1359	3	FSM	ENSMUSG00000028634.18	ENSMUST00000136547.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119671551	119730534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_119671988_119729233_119729470_119729847
ES_00040922	chr4	+	1559	5	FSM	ENSMUSG00000000085.17	ENSMUST00000136801.8	1536	5	-23	0	-23	0	multi-exon	FALSE	canonical	3	10	junction_1	26.8735464723211	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120374799	120387381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386330
ES_00040923	chr4	+	2862	7	FSM	ENSMUSG00000002384.3	ENSMUST00000002457.2	2940	7	30	48	30	-48	multi-exon	FALSE	canonical	2	3	junction_1	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATAAACTATGATGTACA	146	False	NA	NA	False	NA	NA	NA	122998987	123019836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_122999469_123008360_123008551_123008938_123009088_123015678_123015874_123016308_123016389_123016739_123016851_123018180
ES_00040925	chr4	+	641	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2578	130	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCCTCTTGAAAGAATC	NA	False	NA	NA	False	GATAAA	-10	NA	123557095	123565140	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_123557174_123561406_123561541_123564711
ES_00040926	chr4	+	209	1	Intergenic	novelGene_2889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGAGTAGGGTTTCTGATA	NA	False	NA	NA	False	NA	NA	NA	123808090	123808299	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123808100_123808300
ES_00040928	chr4	+	1654	6	FSM	ENSMUSG00000032643.13	ENSMUST00000038684.6	1664	6	10	0	10	0	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGCCCCGTGTATTTG	NA	False	NA	4	True	AATAAA	-15	NA	124594522	124602404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124594645_124599405_124599583_124599676_124599852_124601046_124601217_124601309_124601524_124601608
ES_00040929	chr4	+	1709	18	NNC	ENSMUSG00000028902.5	novel	1820	17	NA	NA	0	23926	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	310.79973859167	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCCAATAAAACCAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	124608675	124650179	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980_124626234_124650163
ES_00040931	chr4	+	4771	4	FSM	ENSMUSG00000044730.18	ENSMUST00000233434.2	4749	4	-22	0	-5	0	multi-exon	FALSE	canonical	3	26	junction_1	10.7806410858642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124830835	124838448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158
ES_00040932	chr4	+	2878	5	FSM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	33	0	33	0	multi-exon	FALSE	non_canonical	3	27	junction_4	9.02773504263389	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGACATTTGGTAAATATA	NA	False	NA	5	True	AATAAA	-19	NA	124830899	124838449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
ES_00040933	chr4	+	2417	4	NIC	ENSMUSG00000050213.7	novel	2345	4	NA	NA	0	19	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	40.7785346584314	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACATAAATGACTTGTT	NA	False	NA	33	True	AATAAA	-39	NA	124960494	124967854	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_124960746_124961799_124961986_124964899_124965484_124966458
ES_00040934	chr4	+	8703	15	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	132805	0	132805	0	3prime_fragment	FALSE	canonical	2	6	junction_12	6.0326492640346	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCCCAAGGTGTGTTT	NA	False	NA	11	True	AATAAA	-18	NA	125517297	125607966	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125564345_125564550_125579786_125580011_125584887_125585007_125587754_125587973_125598125_125598349_125598747_125598999_125601689
ES_00040936	chr4	+	5271	25	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-24	0	intron_retention	FALSE	canonical	1	26	junction_4	21.999842171151	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCAGCTCTAGTG	NA	False	NA	30	True	AATAAA	-23	NA	126450763	126487696	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
ES_00040939	chr4	+	350	3	FSM	ENSMUSG00000028830.15	ENSMUST00000148935.8	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	32	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGCCGGGACTCTGCC	NA	False	NA	NA	False	NA	NA	NA	126647336	126685687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126647397_126650691_126650862_126685567
ES_00040941	chr4	+	203	2	Intergenic	novelGene_2909	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	906	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCTCTCCAATCAGTCA	NA	False	NA	NA	False	NA	NA	NA	126827223	126878039	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126827275_126877887
ES_00040943	chr4	+	1278	1	FSM	ENSMUSG00000084088.2	ENSMUST00000117934.2	220	1	-1020	-38	-1020	38	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGCAGCCCAGAGGGAA	NA	False	NA	NA	False	GGGGCT	-44	NA	126939155	126940433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126939200_126940400
ES_00040946	chr4	+	209	1	Intergenic	novelGene_2917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGTCTCCAACTACTA	5905	False	NA	NA	False	NA	NA	NA	127041578	127041787	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_127041600_127041800
ES_00040947	chr4	+	3798	11	NIC	ENSMUSG00000042388.15	novel	3884	12	NA	NA	-1647	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_9	47.6256233555006	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAATCTCTCCAGAAGAG	9341	False	NA	17	True	AATAAA	-20	NA	127086758	127130815	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_127086951_127088354_127089507_127093465_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129210_127129322_127129942
ES_00040950	chr4	+	530	2	FSM	ENSMUSG00000087470.3	ENSMUST00000143070.2	579	2	49	0	49	0	multi-exon	FALSE	canonical	3	4	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAGTTTTAATGATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	127368775	127370633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_127369098_127370425
ES_00040952	chr4	+	203	2	Antisense	novelGene_ENSMUSG00002075153.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	312	junction_1	0	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTAAAAAAAAAACAGCAGA	NA	False	NA	NA	False	NA	NA	NA	129156419	129213553	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_129156478_129213408
ES_00040954	chr4	+	1567	5	FSM	ENSMUSG00000028797.21	ENSMUST00000137090.8	1575	5	8	0	-3	0	multi-exon	FALSE	canonical	1	1	junction_4	269.261025772391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCTGGTGAGATGGCTC	3173	False	NA	NA	False	AATAAA	-12	NA	129494469	129513367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129512276
ES_00040958	chr4	+	210	1	Intergenic	novelGene_2931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGACTCTTAATCTTTGG	NA	False	NA	NA	False	NA	NA	NA	129696035	129696245	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129696000_129696200
ES_00040959	chr4	+	215	1	Intergenic	novelGene_2934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	298	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGTATTAAAAAAAAAGTTG	6523	False	NA	NA	False	AATAGA	-41	NA	129779078	129779293	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129779100_129779300
ES_00040960	chr4	+	575	3	FSM	ENSMUSG00000085389.8	ENSMUST00000139884.2	541	3	40	-74	40	74	multi-exon	FALSE	canonical	2	2	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTTGTGGAGGCATATT	5464	False	NA	NA	False	NA	NA	NA	129854640	129857524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129854774_129854991_129855074_129857164
ES_00040962	chr4	+	4982	29	FSM	ENSMUSG00000028782.15	ENSMUST00000106015.9	4982	29	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_21	8.88036989025542	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGCCCGGATTGTTT	NA	False	NA	9	True	AATAAA	-15	NA	129885860	129916426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129886673_129898817_129898902_129899182_129899348_129900544_129900710_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129908727_129908827_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ES_00040963	chr4	+	209	4	FSM	ENSMUSG00000040690.16	ENSMUST00000129937.2	445	4	236	0	236	0	multi-exon	FALSE	canonical	1	1	junction_2	0.471404520791032	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTATCCCTGGTATCCT	NA	False	NA	NA	False	GGGGCT	-24	NA	129973038	129974413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129973074_129973284_129973327_129973423_129973511_129974368
ES_00040964	chr4	+	2052	7	NNC	ENSMUSG00000028779.17	novel	1551	5	NA	NA	578	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	104.810013304497	42	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	4858	False	NA	25	True	AATAAA	-32	NA	129996928	130021927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_129997068_130000150_130000320_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ES_00040966	chr4	+	4924	19	NNC	ENSMUSG00000028580.16	novel	5058	20	NA	NA	-166	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_3	198.772032709972	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390465	130508873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040967	chr4	+	5402	22	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	162.792175847019	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390545	130508875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_130390706_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040968	chr4	+	5447	22	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	-76	0	at_least_one_novel_splicesite	FALSE	canonical	3	94	junction_11	137.291602536295	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390555	130508875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476853_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040969	chr4	+	5286	22	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_3	157.757039293694	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390631	130508873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130445467_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040970	chr4	+	5250	21	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	156.141634422085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390665	130508875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040971	chr4	+	5088	21	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	103	junction_13	153.602115870843	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390689	130508875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040972	chr4	+	5375	22	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_3	131.228263506217	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390631	130508873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445467_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040973	chr4	+	4472	18	NNC	ENSMUSG00000028580.16	novel	4614	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	179.435716819668	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390716	130508873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040974	chr4	+	5304	22	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_8	142.356790432747	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390720	130508873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130470988_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00040976	chr4	+	1385	11	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	55.4697214703662	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570788	131595097	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131588487_131588544_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ES_00040977	chr4	+	215	1	Intergenic	novelGene_2948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAGAATTAGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	131977179	131977394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_131977200_131977400
ES_00040979	chr4	+	936	4	FSM	ENSMUSG00000086290.10	ENSMUST00000144705.9	935	4	-1	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035987	132038335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761
ES_00040980	chr4	+	614	3	FSM	ENSMUSG00000086290.10	ENSMUST00000128131.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTTCAATAAAGACTTT	NA	False	NA	-2	True	NA	NA	NA	132037128	132038306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132037527_132037761_132037816_132038144
ES_00040981	chr4	+	623	7	FSM	ENSMUSG00000054405.15	ENSMUST00000139074.8	609	7	-14	0	-14	0	multi-exon	FALSE	canonical	3	27	junction_1	1474.31062044454	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAACAACTGAAGAAG	2317	False	NA	NA	False	NA	NA	NA	132262846	132273957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132262975_132263293_132263458_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947
ES_00040982	chr4	+	213	1	Intergenic	novelGene_2950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	509	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAAGTATTCTTAATCAC	7375	False	NA	NA	False	NA	NA	NA	132267904	132268117	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_132267900_132268100
ES_00040983	chr4	+	5277	18	NIC	ENSMUSG00000028886.16	novel	5186	18	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	22.5258021989425	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGGTTTTCTCCTTTGTCT	NA	False	NA	19	True	AATAAA	-15	NA	132366375	132452074	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132408066_132408205_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ES_00040984	chr4	+	823	5	FSM	ENSMUSG00000028884.15	ENSMUST00000130090.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	3	1348	junction_4	96.0676844729798	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	132495686	132501546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137
ES_00040985	chr4	+	380	1	Intergenic	novelGene_2955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTCTAAGACAGCCAG	NA	False	NA	NA	False	NA	NA	NA	132685512	132685892	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_132685500_132685900
ES_00040986	chr4	+	3465	13	FSM	ENSMUSG00000028874.15	ENSMUST00000030693.13	3363	13	-127	25	-120	-25	multi-exon	FALSE	canonical	1	1	junction_2	3.27766007321619	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGAGGCATGGTCT	NA	False	NA	NA	False	AATAAA	-29	NA	132701285	132729196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132701582_132711462_132711526_132713463_132713664_132714499_132714603_132715993_132716093_132721957_132722062_132722228_132722379_132724431_132724588_132724702_132724883_132725278_132725356_132725651_132725806_132727218_132727351_132727445
ES_00040987	chr4	+	6354	7	FSM	ENSMUSG00000037692.15	ENSMUST00000105915.8	6341	7	-13	0	-13	0	multi-exon	FALSE	canonical	1	4	junction_1	40.1472982348197	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATGTGTACCAATGTTT	1176	False	NA	NA	False	TTTAAA	-15	NA	132738803	132805174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132738835_132739500_132739599_132782323_132782515_132787986_132788204_132788337_132788376_132788686_132793589_132804297
ES_00040988	chr4	+	536	3	FSM	ENSMUSG00000037692.15	ENSMUST00000145682.2	560	3	24	0	24	0	multi-exon	TRUE	canonical	3	15	junction_1	11	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCCCAGGTGACCGGGGGA	1272	False	NA	NA	False	NA	NA	NA	132738899	132782394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132739270_132739503_132739599_132782323
ES_00040990	chr4	+	528	2	FSM	ENSMUSG00000028868.14	ENSMUST00000136637.2	599	2	0	71	0	-71	multi-exon	FALSE	canonical	3	446	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCATGGTTTCTAATGATG	NA	False	NA	NA	False	TTTAAA	-30	NA	132916328	132917789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132916507_132917439
ES_00040991	chr4	+	5426	29	FSM	ENSMUSG00000028862.7	ENSMUST00000030677.7	4334	29	-1093	1	-1093	0	multi-exon	TRUE	canonical	2	4	junction_2	5.06727697273075	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTCTTGGCAACTTC	7356	False	NA	17	True	ATTAAA	-17	NA	132967035	132980239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132968743_132970128_132970269_132970363_132970388_132970621_132970813_132970985_132971155_132972292_132972400_132972816_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977131_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
ES_00040993	chr4	+	1708	4	FSM	ENSMUSG00000037600.17	ENSMUST00000042919.16	1708	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	34.6698716467194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5500	False	NA	9	True	NA	NA	NA	133246302	133258101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133246364_133255252_133256321_133257141_133257217_133257597
ES_00040994	chr4	+	1130	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	2	0	2	0	multi-exon	FALSE	canonical	3	8	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAGTTGCTTGTGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	133280688	133283847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133281277_133283305
ES_00040996	chr4	+	2003	3	FSM	ENSMUSG00000012123.18	ENSMUST00000146102.2	650	3	-1238	-115	-1238	0	multi-exon	FALSE	canonical	3	115	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	405	False	NA	14	True	NA	NA	NA	133816887	133819812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133818548_133819360_133819521_133819629
ES_00040997	chr4	+	1652	14	NNC	ENSMUSG00000012126.17	novel	553	5	NA	NA	224	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	29.3582241534427	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	14	True	AATAAA	-14	NA	133835883	133854086	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_133836134_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ES_00040998	chr4	+	2815	8	NIC	ENSMUSG00000037366.15	novel	3180	11	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	12.4293924195178	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGGCTGGCTTTCTTC	2343	False	NA	19	True	ATTAAA	-21	NA	134130280	134154723	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_134130416_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ES_00041005	chr4	+	211	1	Intergenic	novelGene_2968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGGGGGTGTGCACAG	NA	False	NA	NA	False	NA	NA	NA	135829289	135829500	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_135829300_135829500
ES_00041007	chr4	+	246	2	Intergenic	novelGene_2969	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCTACTTCTATATCAC	7826	False	NA	NA	False	NA	NA	NA	136005255	136028779	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_136005314_136028591
ES_00041012	chr4	+	5668	27	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	0	0	intron_retention	FALSE	canonical	3	584	junction_9	231.427832630339	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	570	False	NA	17	True	ATTAAA	-27	NA	137321517	137385842	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00041014	chr4	+	410	2	Intergenic	novelGene_2975	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGGGGACTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	137362893	137396488	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137363021_137396205
ES_00041015	chr4	+	3261	25	FSM	ENSMUSG00000041351.17	ENSMUST00000047243.12	3247	25	-14	0	-14	0	multi-exon	TRUE	canonical	1	1	junction_1	42.9281538024743	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	NA	False	NA	10	True	AATAAA	-20	NA	137408963	137457171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137409067_137410771_137410808_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ES_00041016	chr4	+	3246	23	NIC	ENSMUSG00000041351.17	novel	3168	23	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	41.2645416392114	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	9903	False	NA	11	True	AATAAA	-21	NA	137434785	137457172	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137434972_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
ES_00041018	chr4	+	5108	26	NNC	ENSMUSG00000028760.17	novel	5363	22	NA	NA	-31611	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.82326368971902	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGACTTCTCCTTTTGAC	NA	False	NA	NA	False	AATAAA	-23	NA	137847386	137934373	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_137847450_137847656_137847766_137853120_137853946_137873595_137873685_137878892_137879140_137883922_137884057_137885701_137885822_137890757_137890929_137893043_137893242_137897787_137897935_137898365_137898603_137899883_137899989_137903158_137903292_137904248_137904344_137905227_137905322_137907857_137907919_137910438_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
ES_00041019	chr4	+	668	5	FSM	ENSMUSG00000028759.14	ENSMUST00000137865.8	669	5	1	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	35.6265350546471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAATCTTAACTGAGGCCA	4565	False	NA	NA	False	NA	NA	NA	137943937	137953334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950839_137950961_137953199
ES_00041020	chr4	+	3027	12	NIC	ENSMUSG00000028759.14	novel	3113	12	NA	NA	18	1	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	30.9291378840073	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACTACAGCTTAGTGA	4591	False	NA	21	True	AATAAA	-19	NA	137943963	137970460	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137944052_137949399_137949500_137950839_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ES_00041021	chr4	+	3094	12	NIC	ENSMUSG00000028759.14	novel	3361	13	NA	NA	48	1	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.9615581863273	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACTACAGCTTAGTGA	5117	False	NA	21	True	AATAAA	-19	NA	137944489	137970460	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ES_00041023	chr4	+	459	5	FSM	ENSMUSG00000045349.16	ENSMUST00000139033.8	459	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.03112887414927	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGGTACGGGACCTA	NA	False	NA	NA	False	NA	NA	NA	137977733	137983001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137977820_137980922_137981001_137981583_137981665_137982008_137982084_137982862
ES_00041025	chr4	+	3011	17	NIC	ENSMUSG00000041143.17	novel	3318	17	NA	NA	10	1	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	17.3561048337465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTTCTTCTTTTCACCTT	NA	False	NA	29	True	AATAAA	-20	NA	138700229	138786483	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_138700301_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
ES_00041026	chr4	+	6232	24	FSM	ENSMUSG00000078517.13	ENSMUST00000179784.9	6232	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	117.646453795842	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTATTTGTGTATAT	NA	False	NA	26	True	NA	NA	NA	139079897	139106041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139091641_139091651_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
ES_00041027	chr4	+	8092	55	NNC	ENSMUSG00000066036.15	novel	15928	106	NA	NA	130	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	96.3191870941046	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGCTGCTGCTTGCCCAG	NA	False	NA	29	True	AATAAA	-30	NA	139162450	139216848	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_139162496_139163432_139163571_139164383_139164506_139165360_139165473_139167721_139167853_139167955_139168134_139168506_139168608_139169996_139170135_139170709_139170885_139171905_139172003_139172554_139172663_139173169_139173287_139174169_139174380_139176132_139176283_139177625_139177854_139178556_139178636_139179038_139179285_139179881_139180051_139180445_139180591_139181282_139181369_139182477_139182566_139182758_139182953_139184842_139185083_139185405_139185545_139186109_139186236_139186336_139186466_139187309_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ES_00041028	chr4	+	222	1	FSM	ENSMUSG00002076108.1	ENSMUST00020182957.1	96	1	37	-163	37	163	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGGAGGCAGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	140420044	140420266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140420000_140420300
ES_00041030	chr4	+	1213	2	NNC	ENSMUSG00000085918.2	novel	2001	3	NA	NA	3427	-11	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	65	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTGTATGTGTAT	NA	False	NA	NA	False	NA	NA	NA	140541730	140544811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_140542139_140544006
ES_00041033	chr4	+	201	2	Intergenic	novelGene_2992	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTGAGAACTTGAATTGG	1601	False	NA	NA	False	NA	NA	NA	141284527	141292461	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_141284579_141292311
ES_00041035	chr4	+	3687	10	NNC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	0	21025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	60.6357267460751	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	141521154	141564312	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905_141543284_141564286
ES_00041036	chr4	+	794	1	FSM	ENSMUSG00000083826.2	ENSMUST00000118638.2	794	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATGTACATTAAATTTT	NA	False	NA	NA	False	AAAAAG	-32	NA	142893172	142893966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_142893200_142894000
ES_00041038	chr4	+	8490	5	Fusion	ENSMUSG00000083081.2_ENSMUSG00000085101.8	novel	545	3	NA	NA	-326	4120	multi-exon	TRUE	canonical	3	19	junction_4	37.3898381916798	30	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGTTGTCCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	145136488	145187069	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145136997_145138756_145138851_145160315_145160385_145176036_145183755_145186968
ES_00041040	chr4	+	8083	5	Fusion	ENSMUSG00000083081.2_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14358	4120	multi-exon	FALSE	non_canonical	0	0	junction_2	36.5718470958195	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGTTGTCCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	145158951	145187069	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036_145183755_145186968
ES_00041041	chr4	+	7899	3	Fusion	ENSMUSG00000083081.2_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14358	4120	multi-exon	FALSE	canonical	3	19	junction_2	7	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGTTGTCCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	145158951	145187069	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145159032_145176036_145183755_145186968
ES_00041043	chr4	+	4084	6	Fusion	ENSMUSG00000078502.11_ENSMUSG00000078503.10	novel	597	5	NA	NA	0	4	intron_retention	TRUE	non_canonical	0	0	junction_5	201.651580702954	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTTGTTTTCAATTT	912	False	NA	NA	False	NA	NA	NA	145237346	145351919	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145237496_145247375_145247456_145257381_145257486_145261385_145261513_145263160_145264140_145349274
ES_00041044	chr4	+	2728	8	Fusion	ENSMUSG00000078502.11_ENSMUSG00000078503.10	novel	1221	3	NA	NA	-2	3	multi-exon	FALSE	canonical	0	0	junction_1	22.7891846886963	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGGTTGTTTTCAATT	924	False	NA	NA	False	NA	NA	NA	145237358	145351918	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145237496_145312571_145312707_145313929_145314095_145322185_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350109
ES_00041045	chr4	+	3057	5	FSM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	-13	0	-13	0	multi-exon	FALSE	canonical	2	9	junction_1	215.70972972956	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	5006	False	NA	NA	False	NA	NA	NA	145241440	145265758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145241589_145247375_145247456_145257381_145257486_145261385_145261513_145263160
ES_00041046	chr4	+	3307	3	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	19182	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	269	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	2188	False	NA	NA	False	NA	NA	NA	145260635	145265758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145261513_145263160_145264097_145264264
ES_00041047	chr4	+	578	1	Genic_Genomic	ENSMUSG00000081885.2	novel	NA	NA	NA	NA	-92	-2557	mono-exon	FALSE	NA	NA	NA	NA	NA	368	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAACTGGATGAGTGAA	NA	False	NA	NA	False	NA	NA	NA	145367834	145368412	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_145367800_145368400
ES_00041052	chr4	+	1165	1	FSM	ENSMUSG00000082615.2	ENSMUST00000119920.2	637	1	-41	-487	-41	487	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTAGTATTGTTGTCCTT	6072	False	NA	NA	False	AGTAAA	-12	NA	145416370	145417535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145416400_145417500
ES_00041053	chr4	+	3320	5	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	212.996918991801	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145422730	145431011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145422806_145425813_145425941_145427474_145428041_145428208_145429559_145429809
ES_00041054	chr4	+	680	3	Genic_Genomic	ENSMUSG00000094417.2	novel	565	1	NA	NA	-116	14591	multi-exon	FALSE	canonical	3	220	junction_1	12	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTATGGAAGGAAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	145501172	145516444	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_145501361_145510590_145510684_145516045
ES_00041056	chr4	+	798	1	FSM	ENSMUSG00000096233.2	ENSMUST00000117655.3	780	1	-29	11	-29	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTAAGGAATGGTC	NA	False	NA	NA	False	NA	NA	NA	145563759	145564557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145563800_145564600
ES_00041057	chr4	+	1237	1	FSM	ENSMUSG00000081595.2	ENSMUST00000117799.2	748	1	-103	-386	-103	386	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTAGTGTCTGTGTGAAC	NA	False	NA	NA	False	NA	NA	NA	145995242	145996479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145995200_145996500
ES_00041061	chr4	+	4152	7	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	178.682213253959	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146093393	146135319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146093548_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535_146132774_146132941
ES_00041062	chr4	+	548	1	FSM	ENSMUSG00000081522.2	ENSMUST00000119716.2	643	1	-138	233	-138	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGTGACAAGCAGCCAT	NA	False	NA	NA	False	NA	NA	NA	146114555	146115103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146114600_146115100
ES_00041063	chr4	+	236	2	Intergenic	novelGene_3008	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAGGAGGTAGGGGACA	NA	False	NA	NA	False	NA	NA	NA	146177040	146179468	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146177195_146179386
ES_00041065	chr4	+	710	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	0	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	159.401882046606	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206900	146253393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146207052_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
ES_00041067	chr4	+	3131	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297142	59360	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	140.679778219899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAATGAAAAGGTAGA	2283	False	NA	NA	False	NA	NA	NA	146289341	146683212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146289526_146597241_146597335_146616526_146616611_146619877_146620005_146621233_146623844_146683179
ES_00041068	chr4	+	3179	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297134	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	138.01941892357	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	2291	False	NA	NA	False	NA	NA	NA	146289349	146623852	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146289526_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146621233
ES_00041069	chr4	+	1055	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297134	3413	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	149.231900075017	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2291	False	NA	NA	False	NA	NA	NA	146289349	146627265	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146289526_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
ES_00041071	chr4	+	7359	3	Intergenic	novelGene_3014	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	96	junction_2	262.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGATCTGGAAGTGT	2295	False	NA	NA	False	AATAAA	-19	NA	146289353	146302769	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146295675
ES_00041072	chr4	+	787	5	Intergenic	novelGene_3015	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	257.760062849154	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAGAAAAAACACAACTG	2295	False	NA	NA	False	NA	NA	NA	146289353	146318256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146312866_146312972_146316363_146316491_146317966
ES_00041073	chr4	+	725	6	Intergenic	novelGene_3017	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	103	junction_2	205.134102479329	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCTCCAATCCTCAAACC	2295	False	NA	-59	True	NA	NA	NA	146289353	146802225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146435241_146435318_146797298_146797381_146800390_146800518_146802050
ES_00041075	chr4	+	2741	1	Intergenic	novelGene_3018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCACCCCAACCCATCCC	NA	False	NA	NA	False	AATAAA	-16	NA	146297595	146300336	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146297600_146300300
ES_00041076	chr4	+	732	1	Intergenic	novelGene_3019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCTATGGACTATGCCC	NA	False	NA	NA	False	NA	NA	NA	146336493	146337225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146336500_146337200
ES_00041078	chr4	+	572	4	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-168373	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	369.239759505934	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146365106	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146365259_146547961_146548020_146548860_146548988_146550437
ES_00041079	chr4	+	4470	7	Intergenic	novelGene_3020	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	155.072742787234	178	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTCTCATAAAGTATTT	NA	False	NA	NA	False	AATAAA	-20	NA	146365106	146806073	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146365259_146428065_146428160_146435241_146435318_146797298_146797381_146800390_146800518_146802050_146803647_146803730
ES_00041080	chr4	+	2755	6	Intergenic	novelGene_3021	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_4	46.9084214187602	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146365115	146393561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146365259_146384326_146384431_146388486_146388614_146390758_146391620_146391956_146392589_146392673
ES_00041085	chr4	+	1864	1	Intergenic	novelGene_3028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTTGCGAGACTGTAT	1291	False	NA	NA	False	NA	NA	NA	146432390	146434254	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146432400_146434300
ES_00041086	chr4	+	995	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33286	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	259.684049482358	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500193	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00041087	chr4	+	931	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33285	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	279.837810168676	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500194	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500544_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00041088	chr4	+	723	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33248	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	275.60595058888	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500231	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500373_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00041089	chr4	+	654	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33248	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	321.524785203256	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500231	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500373_146502756_146502850_146547961_146548020_146548860_146548988_146550437
ES_00041090	chr4	+	826	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33288	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	255.355308018716	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500191	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00041091	chr4	+	3878	2	Genic_Genomic	ENSMUSG00000073716.7_ENSMUSG00000081998.2	novel	780	1	NA	NA	-477	1392	multi-exon	FALSE	canonical	3	12	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTGAATCCACAGGACTC	NA	False	NA	5	True	AATAAA	-40	NA	146559311	146566775	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_146561061_146564646
ES_00041092	chr4	+	780	1	FSM	ENSMUSG00000073716.7	ENSMUST00000094493.5	780	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGGTCTTTGCTAAGCC	NA	False	NA	NA	False	NA	NA	NA	146559788	146560568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_146559800_146560600
ES_00041093	chr4	+	3117	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-82	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	134.730054182428	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586401	146623849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146586602_146597241_146597335_146616529_146616611_146619877_146620005_146621233
ES_00041095	chr4	+	2944	4	NNC	ENSMUSG00000056300.15	novel	2953	4	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	161.989711607456	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599382	146623852	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146599500_146616529_146616611_146619877_146620005_146621233
ES_00041096	chr4	+	224	1	Intergenic	novelGene_3029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	146665573	146665797	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146665600_146665800
ES_00041097	chr4	+	715	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	148.349587124468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAATGACTCTGTAAACA	NA	False	NA	NA	False	AAAAAG	-34	NA	146695446	146742063	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695586_146697966_146698060_146728915_146728985_146739355_146739414_146740256_146740384_146741834
ES_00041098	chr4	+	908	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	88.7166275283275	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATGACTCTGTAAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	146695446	146742064	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695801_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ES_00041100	chr4	+	2462	1	Intergenic	novelGene_3033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTACTCTGGTAAATCAGC	NA	False	NA	NA	False	NA	NA	NA	146906705	146909167	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146906700_146909200
ES_00041103	chr4	+	635	5	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	0	-3348	multi-exon	FALSE	canonical	3	25	junction_2	225.088316000631	318	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAACCTAAAAAGACATAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147141903	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147056575_147058404_147058498_147136962_147137048_147140055_147140183_147141715
ES_00041105	chr4	+	4024	8	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	0	0	multi-exon	TRUE	non_canonical	0	0	junction_3	239.563548724657	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	147056432	147145251	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147056575_147058404_147058498_147060181_147060315_147115003_147115080_147136962_147137048_147140055_147140183_147141715_147142954_147143121
ES_00041106	chr4	+	1152	3	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	1	38789	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.5	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAAAATCTGTTC	NA	False	NA	NA	False	NA	NA	NA	147056433	147114001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147056575_147058404_147058498_147113083
ES_00041107	chr4	+	1294	4	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	38797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	158.394023456274	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATCTGTTCTTTGCGAG	NA	False	NA	NA	False	NA	NA	NA	147056432	147114009	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147056575_147058404_147058498_147060181_147060315_147113083
ES_00041111	chr4	+	747	1	Genic_Genomic	ENSMUSG00000081405.2	novel	NA	NA	NA	NA	-74	-982	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATAAATAAATATA	NA	False	NA	NA	False	NA	NA	NA	147186709	147187456	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_147186700_147187500
ES_00041112	chr4	+	2899	6	Fusion	ENSMUSG00000078497.10_ENSMUSG00000082779.2	novel	454	2	NA	NA	-61	2158	multi-exon	TRUE	non_canonical	0	0	junction_5	216.236537153183	47	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	147209651	147477619	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147209785_147447267_147447362_147469673_147469759_147472778_147472906_147474656_147475537_147476039
ES_00041114	chr4	+	747	6	NIC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	1	1788	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	82.4101935442455	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGTAAACAGTTTAAC	NA	False	NA	NA	False	AATACA	-3	NA	147216495	147263017	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_147216647_147219028_147219122_147224494_147224577_147260303_147260362_147261203_147261331_147262781
ES_00041115	chr4	+	219	2	Antisense	novelGene_ENSMUSG00000082176.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTTTATTCTTAAATG	1238	False	NA	NA	False	NA	NA	NA	147231606	147300841	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_147231631_147300646
ES_00041116	chr4	+	626	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1808	1788	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	35.8503835404867	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGTAAACAGTTTAAC	2774	False	NA	NA	False	AATACA	-3	NA	147233142	147263017	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147233279_147249797_147249867_147260303_147260362_147261203_147261331_147262781
ES_00041119	chr4	+	1823	2	ISM	ENSMUSG00000087207.9	ENSMUST00000125785.8	585	4	23057	-1527	44	817	3prime_fragment	FALSE	canonical	3	133	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147337797	147344612	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_147337859_147342850
ES_00041121	chr4	+	341	1	FSM	ENSMUSG00000082925.2	ENSMUST00000117628.2	3121	1	2470	310	2470	-310	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAAGAGGATCATTTTC	892	False	NA	NA	False	NA	NA	NA	147362902	147363243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147362900_147363200
ES_00041123	chr4	+	3337	5	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	4880	2581	multi-exon	TRUE	canonical	0	0	junction_4	189.003306849378	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	11	True	NA	NA	NA	147395010	147600524	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147395147_147409230_147409335_147413438_147413566_147596801_147598301_147599053
ES_00041124	chr4	+	3196	6	NNC	ENSMUSG00000078497.10	novel	572	5	NA	NA	0	2158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	210.482873412542	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	2369	False	NA	NA	False	AATAAA	-22	NA	147445759	147477619	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147445939_147447267_147447362_147469673_147469759_147472778_147472906_147474656_147475178_147475429
ES_00041125	chr4	+	559	1	FSM	ENSMUSG00000082248.2	ENSMUST00000120609.2	559	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGTTTGAAAGTGACCT	NA	False	NA	NA	False	AAAACA	-19	NA	147527927	147528486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147527900_147528500
ES_00041127	chr4	+	3326	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	2581	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	126.080291877835	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	11	True	NA	NA	NA	147576855	147600524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147578832_147578938_147592042_147592098_147595209_147595337_147596801_147598217_147599053
ES_00041128	chr4	+	2131	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	124.355086345513	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	11	True	NA	NA	NA	147576855	147600524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597092_147599018
ES_00041130	chr4	+	926	1	FSM	ENSMUSG00000096440.2	ENSMUST00000179853.2	382	1	10	-554	10	554	mono-exon	FALSE	NA	NA	NA	NA	NA	1301	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATAACACTGGAGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	147605997	147606923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147606000_147606900
ES_00041132	chr4	+	585	5	NIC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	0	62	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	39.4104998699585	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATACTGGAACCAAAAAAG	NA	False	NA	NA	False	AATATA	-30	NA	147637733	147667460	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290
ES_00041133	chr4	+	210	1	Intergenic	novelGene_3040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAAAGTTTAATG	1342	False	NA	NA	False	NA	NA	NA	147938174	147938384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_147938200_147938400
ES_00041134	chr4	+	754	1	FSM	ENSMUSG00000070583.2	ENSMUST00000094481.2	1380	1	-144	770	-144	-770	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGAGGAAAGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	147953291	147954045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147953300_147954000
ES_00041136	chr4	+	2833	12	NNC	ENSMUSG00000029009.18	novel	2104	6	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	28.2965406874415	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGGAGGCTTGCTCTTG	NA	False	NA	18	True	AAGAAA	-32	NA	148123626	148140663	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_148123867_148126043_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ES_00041137	chr4	+	6095	12	FSM	ENSMUSG00000029009.18	ENSMUST00000069604.15	6072	12	-23	0	-23	0	multi-exon	TRUE	canonical	2	7	junction_1	32.4156884780214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGTTTTTAAATGCTTA	NA	False	NA	17	True	ATTAAA	-21	NA	148125624	148144008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148125779_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ES_00041138	chr4	+	1162	10	FSM	ENSMUSG00000029003.12	ENSMUST00000084129.9	1162	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	269.730638385688	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148215371	148230156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148215424_148224299_148224478_148225241_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ES_00041139	chr4	+	2816	25	FSM	ENSMUSG00000017264.17	ENSMUST00000097781.11	2816	25	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_15	122.740912483256	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	148642911	148666850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657487_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ES_00041140	chr4	+	720	4	FSM	ENSMUSG00000028979.18	ENSMUST00000136647.2	794	4	72	2	72	-2	multi-exon	FALSE	canonical	3	27	junction_2	2.86744175568088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACTGTGGCTGTGTGTCT	NA	False	NA	3	True	AATAAA	-13	NA	148687103	148688872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148687354_148687448_148687627_148688143_148688276_148688712
ES_00041144	chr4	+	352	4	FSM	ENSMUSG00000028990.14	ENSMUST00000124413.8	359	4	7	0	-4	0	multi-exon	FALSE	canonical	3	21	junction_1	85.3867020612044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGATTCGCTGAAGAAGAT	NA	False	NA	NA	False	AAAAAG	-28	NA	149569692	149572579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_149569731_149570318_149570457_149571208_149571318_149572512
ES_00041145	chr4	+	376	1	FSM	ENSMUSG00000083811.2	ENSMUST00000122237.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTGTGGGTATATCC	NA	False	NA	NA	False	GGGGCT	-14	NA	149585089	149585465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_149585100_149585500
ES_00041146	chr4	+	4510	20	NNC	ENSMUSG00000039953.14	novel	3319	19	NA	NA	0	48	at_least_one_novel_splicesite	FALSE	non_canonical	3	19	junction_2	163.389377386228	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGTTGAGGGATTTATGA	NA	False	NA	72	True	NA	NA	NA	149670924	149733404	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_149671230_149698506_149698630_149710543_149710574_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829_149733144_149733170
ES_00041147	chr4	+	4290	20	NNC	ENSMUSG00000039953.14	novel	3319	19	NA	NA	0	48987	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	130.976642522347	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCATTCAGGCTGATTTA	NA	False	NA	NA	False	ACTAAA	-36	NA	149671094	149782343	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829_149733144_149733170_149733356_149782314
ES_00041149	chr4	+	3082	2	Genic_Genomic	ENSMUSG00000102813.2	novel	2459	1	NA	NA	0	805	multi-exon	FALSE	non_canonical	1	7	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTATCAGTGCATTTGTA	4085	False	NA	8	True	AATAAA	-21	NA	150152995	150156259	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_150154050_150154231
ES_00041153	chr4	+	6053	13	NIC	ENSMUSG00000039852.18	novel	496	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_9	37.0730322771448	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGGCCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	150654044	150706423	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_150654144_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701212_150701937_150702862_150703010_150703481_150703663_150703912
ES_00041154	chr4	+	3841	9	FSM	ENSMUSG00000039768.17	ENSMUST00000139555.8	3841	9	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_7	72.2236110977567	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGGTCCCTTTATCTTAC	9110	False	NA	NA	False	AATAAA	-15	NA	152018187	152061141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216
ES_00041155	chr4	+	3855	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	97	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	45.4175076374739	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGTGTCATGGCCTTC	6495	False	NA	13	True	AATAAA	-13	NA	152093356	152102137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101398_152101431
ES_00041159	chr4	+	4825	5	NNC	ENSMUSG00000039662.17	novel	4919	5	NA	NA	8	-4	intron_retention	FALSE	canonical	3	9	junction_1	48.5952672592712	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATGAGGAGTCCTGT	4620	False	NA	-2	True	AATAAA	-13	NA	152381768	152391573	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_152382026_152383145_152383231_152384127_152384298_152384993_152385212_152387478
ES_00041162	chr4	+	3366	8	NNC	ENSMUSG00000029028.15	novel	3395	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	205	junction_7	81.417292451936	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTGCATCAGCAGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	154096259	154105969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104660_154104688
ES_00041170	chr4	+	3201	12	NNC	ENSMUSG00000029064.16	novel	3131	12	NA	NA	-84	11941	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1164.87785334907	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAAGTTCTTCTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	155575733	155655667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927_155643722_155655636
ES_00041174	chr4	+	5582	6	NIC	ENSMUSG00000029068.17	novel	1894	10	NA	NA	2760	0	intron_retention	FALSE	canonical	3	294	junction_3	195.756583541908	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGAAATTTTACGTGGT	8393	False	NA	-32	True	NA	NA	NA	155900713	155908760	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ES_00041177	chr4	+	517	2	FSM	ENSMUSG00000029034.10	ENSMUST00000132632.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGACCAGGGCTTCGGCC	NA	False	NA	NA	False	NA	NA	NA	155972579	155973190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_155972983_155973076
ES_00041182	chr4	+	2978	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	-4	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8271	False	NA	16	True	NA	NA	NA	156194454	156211716	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ES_00041183	chr4	+	5582	6	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	183	junction_3	12.3870900537616	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	NA	False	NA	20	True	NA	NA	NA	156198352	156211720	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_156198459_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208580_156209873
ES_00041186	chr4	-	582	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	110	False	NA	-40	True	AATAAA	-15	NA	3835488	3834472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3834684_3834935_3835010_3835191
ES_00041188	chr4	-	639	4	FSM	ENSMUSG00000028245.16	ENSMUST00000143983.2	639	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_2	9.62635271879577	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATGTTTGTGTAGGTGA	NA	False	NA	NA	False	NA	NA	NA	6432698	6424569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_6424988_6426401_6426474_6428391_6428522_6432679
ES_00041190	chr4	-	279	3	FSM	ENSMUSG00000041272.12	ENSMUST00000150082.2	2614	3	0	2335	0	-2335	multi-exon	FALSE	canonical	0	0	junction_2	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCACCCCATGAATCACA	13	True	NA	NA	False	NA	NA	NA	6990483	6823028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_6823148_6842360_6842427_6990389
ES_00041191	chr4	-	1035	8	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	0	65	combination_of_known_junctions	TRUE	canonical	0	0	junction_6	146.340531024075	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTCCG	36	False	NA	62	True	ATTAAA	-25	NA	11076149	11050979	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073143_11073244_11075979
ES_00041192	chr4	-	1009	9	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	102.543588292979	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	11	True	NA	-3	True	TTTAAA	-3	NA	11076174	11051044	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073186_11073244_11075979
ES_00041193	chr4	-	933	9	NNC	ENSMUSG00000050323.15	novel	675	6	NA	NA	0	-802	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	135.700439848219	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGAGCGTCACAGCACA	2	True	NA	NA	False	NA	NA	NA	11076183	11052014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_11052064_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073139_11073244_11075979
ES_00041195	chr4	-	3299	28	FSM	ENSMUSG00000040738.11	ENSMUST00000044616.10	3433	28	0	134	0	-134	multi-exon	TRUE	canonical	1	2	junction_1	89.9121351314479	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATTTTAAATCCCC	-1	True	NA	NA	False	TTTAAA	-8	NA	11254258	11199291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11199452_11204463_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
ES_00041196	chr4	-	708	5	FSM	ENSMUSG00000040738.11	ENSMUST00000136545.8	1961	5	1253	0	1253	0	multi-exon	FALSE	canonical	3	435	junction_1	16.8745370306862	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATTTAATATTTTCTGC	NA	False	NA	NA	False	AATAAA	-20	NA	11211932	11204109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881
ES_00041197	chr4	-	657	9	FSM	ENSMUSG00000040738.11	ENSMUST00000133031.2	657	9	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_8	22.9945645751338	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAGATCTTGTTTGTTC	NA	False	NA	NA	False	ATTAAA	-22	NA	11219902	11208754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892
ES_00041199	chr4	-	200	1	Intergenic	novelGene_2704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTCCTCTTCTATACAC	NA	False	NA	NA	False	NA	NA	NA	11402756	11402556	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_11402600_11402800
ES_00041200	chr4	-	4647	3	FSM	ENSMUSG00000049225.15	ENSMUST00000095144.10	2506	3	-536	-1605	-11	-18	multi-exon	FALSE	canonical	3	10	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGGCTTTACATCTATA	NA	False	NA	-25	True	AATAAA	-3	NA	11966463	11958201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11962234_11965613_11965649_11965883
ES_00041202	chr4	-	1051	9	NNC	ENSMUSG00000028218.20	novel	1639	9	NA	NA	0	52919	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	137.691627831906	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTCTTTCATCATCCT	263	False	NA	NA	False	ATTAAA	-28	NA	12171734	12100489	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_12100591_12153816_12153979_12155648_12155769_12157650_12157765_12164087_12164199_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ES_00041206	chr4	-	3261	8	NNC	ENSMUSG00000040550.18	novel	2647	8	NA	NA	27	93746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.047665496155	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCTCTTGCCAAAGATA	41	False	NA	NA	False	NA	NA	NA	14826560	14715751	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_14715785_14809508_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ES_00041207	chr4	-	2676	12	NNC	ENSMUSG00000041135.16	novel	2804	12	NA	NA	79	-2	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_10	29.5707583951801	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTTATCTTCTGGT	54	False	NA	-10	True	AATAAA	-17	NA	16163564	16122742	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16157571_16157649_16158276_16158431_16163223
ES_00041208	chr4	-	935	1	FSM	ENSMUSG00000095139.3	ENSMUST00000178174.3	5587	1	3187	1465	3187	-1465	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTATGTTAAAGTAATAT	3282	False	NA	NA	False	AATAAA	-19	NA	22485179	22484244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_22484200_22485200
ES_00041209	chr4	-	820	1	FSM	ENSMUSG00000082876.2	ENSMUST00000118402.2	1079	1	289	-30	289	30	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCATGGAGTTACATGC	NA	False	NA	NA	False	NA	NA	NA	23518151	23517331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_23517300_23518200
ES_00041210	chr4	-	1610	7	FSM	ENSMUSG00000040387.17	ENSMUST00000108213.2	1848	7	0	238	0	-238	multi-exon	TRUE	canonical	1	3	junction_1	2.49443825784929	7653	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGAGCGTGCCTCCTATGT	164	False	NA	NA	False	NA	NA	NA	24850931	24649539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_24650267_24682054_24682271_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
ES_00041211	chr4	-	4248	20	NIC	ENSMUSG00000040359.15	novel	5189	19	NA	NA	0	444	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	36.6180404503927	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATACAACTTCATGGCTG	16	True	NA	NA	False	NA	NA	NA	25281760	25248155	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ES_00041212	chr4	-	5189	19	FSM	ENSMUSG00000040359.15	ENSMUST00000142949.8	5189	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	37.6058588159339	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTTATACAGTCTAT	16	True	NA	-10	True	AATAAA	-19	NA	25281760	25248599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ES_00041213	chr4	-	707	1	FSM	ENSMUSG00000081789.2	ENSMUST00000117829.2	491	1	313	-529	313	529	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAAGTTTGTTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	25541968	25541261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_25541300_25542000
ES_00041214	chr4	-	452	1	FSM	ENSMUSG00000084440.4	ENSMUST00000122491.4	118	1	6	-340	6	340	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCCACAGACAAAAGGCAG	5	False	NA	NA	False	NA	NA	NA	31998735	31998283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_31998300_31998700
ES_00041218	chr4	-	10170	9	NNC	ENSMUSG00000039967.15	novel	9986	8	NA	NA	-8	-16	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_8	58.5062763727106	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTTTTCAACAACTGA	3	True	NA	-11	True	AATAAA	-21	NA	34882938	34803128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34847810_34848033_34882757
ES_00041219	chr4	-	215	2	Intergenic	novelGene_2732	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	34955713	34935780	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_34935945_34955662
ES_00041221	chr4	-	976	2	Genic_Genomic	ENSMUSG00000082762.2	novel	873	1	NA	NA	-10	33353	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAAGAGGGCCAAAGTC	8303	False	NA	NA	False	NA	NA	NA	35202985	35168749	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_35168787_35202046
ES_00041222	chr4	-	3249	11	NIC	ENSMUSG00000028300.15	novel	3193	11	NA	NA	46	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_10	28.2637577119533	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	False	NA	-5	True	AATAAA	-16	NA	35226077	35191286	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225928
ES_00041225	chr4	-	235	2	Intergenic	novelGene_2742	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTTTCTAAATAGAACTA	6197	False	NA	NA	False	NA	NA	NA	40214394	40214110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_40214316_40214364
ES_00041226	chr4	-	1831	13	NNC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	0	26445	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	365.993586768342	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGGATTCTAATCGCCA	-27	True	NA	NA	False	NA	NA	NA	40757883	40710096	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_40710124_40737115_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ES_00041227	chr4	-	4013	7	NNC	ENSMUSG00000028413.14	novel	3983	6	NA	NA	0	29512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.4381309661873	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCACTGGGGGTTGGGCT	-20	True	NA	NA	False	NA	NA	NA	40854005	40775089	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_40775123_40804604_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438_40823675_40853390
ES_00041228	chr4	-	321	1	Intergenic	novelGene_2751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACATTTTGTTTAGTTGG	NA	False	NA	NA	False	NA	NA	NA	40912634	40912313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_40912300_40912600
ES_00041229	chr4	-	675	1	FSM	ENSMUSG00000081309.4	ENSMUST00000117674.2	615	1	20	-80	20	80	mono-exon	FALSE	NA	NA	NA	NA	NA	412	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTCCCTTTGGAATTT	NA	False	NA	NA	False	AATACA	-38	NA	40913335	40912660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_40912700_40913300
ES_00041231	chr4	-	5593	13	FSM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_12	8.49632273398321	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTCCAGGCTTTCT	14	True	NA	NA	False	NA	NA	NA	41464840	41390744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41464709
ES_00041232	chr4	-	1700	6	NIC	ENSMUSG00000028438.17	novel	1756	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	11.0815161417561	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAGCTTGGATACATAG	8	True	NA	NA	False	NA	NA	NA	41464846	41413546	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41429266_41429412_41464709
ES_00041234	chr4	-	730	3	FSM	ENSMUSG00000073888.14	ENSMUST00000108035.8	731	3	0	1	0	-1	multi-exon	FALSE	canonical	3	81	junction_1	9.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCGTCTCTTTTATTTC	2623	False	NA	4	True	AATAAA	-27	NA	41771547	41769467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41769655_41769843_41769977_41771137
ES_00041236	chr4	-	742	5	FSM	ENSMUSG00000073888.14	ENSMUST00000108036.8	841	5	95	4	-65	-4	multi-exon	FALSE	canonical	3	53	junction_3	18.6329680942141	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTCCGTCTCTTTTAT	168	False	NA	1	True	AATAAA	-24	NA	41774002	41769470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735
ES_00041237	chr4	-	2549	6	NIC	ENSMUSG00000073888.14	novel	590	6	NA	NA	0	-145	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.635566420122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCCAGAACCGCAGCCTG	28	False	NA	NA	False	NA	NA	NA	41774142	41769622	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_41769655_41769843_41769977_41771137_41773351_41773464_41773525_41773735_41773804_41774099
ES_00041243	chr4	-	4063	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	-31	4	intron_retention	FALSE	canonical	3	30	junction_10	46.9541265492182	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGATCTGTGAGGTGCT	-11	True	NA	-3	True	AATAAA	-25	NA	43025787	43017630	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025285
ES_00041244	chr4	-	3095	9	FSM	ENSMUSG00000036002.13	ENSMUST00000036462.12	3074	9	-21	0	-21	0	multi-exon	FALSE	canonical	1	1	junction_8	15.8779524813497	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	NA	False	NA	2	True	AATAAA	-21	NA	43046241	43032413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43046103
ES_00041245	chr4	-	8189	58	NNC	ENSMUSG00000028465.17	novel	8393	57	NA	NA	-26	51480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.7396667894525	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCCTTTTGAGCAGG	-4	True	NA	NA	False	NA	NA	NA	43562183	43480038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_43480073_43531517_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549085_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
ES_00041249	chr4	-	600	5	FSM	ENSMUSG00000028470.11	ENSMUST00000151238.8	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	305.186316043167	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	11	True	NA	-5	True	AATAAA	-16	NA	43656443	43654226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_43654423_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ES_00041250	chr4	-	5439	11	FSM	ENSMUSG00000035696.16	ENSMUST00000098098.9	5061	11	-378	0	19	0	multi-exon	FALSE	canonical	2	7	junction_10	20.7749849578766	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGTGTTTCATGTAAGGCG	1281	False	NA	0	True	AATAAA	-26	NA	44167986	44126209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167317
ES_00041252	chr4	-	1055	5	FSM	ENSMUSG00000035696.16	ENSMUST00000143337.2	1028	5	-27	0	-27	0	multi-exon	FALSE	canonical	3	27	junction_4	15.0228991875736	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTCTTATACATCCTCCT	11	True	NA	NA	False	NA	NA	NA	44168032	44142392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167626
ES_00041253	chr4	-	4711	2	FSM	ENSMUSG00000049657.10	ENSMUST00000180217.2	4708	2	0	-3	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGGTCTCCTTTGCTTC	NA	False	NA	0	True	ATTAAA	-26	NA	45012412	44991241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44995387_45011846
ES_00041255	chr4	-	825	3	FSM	ENSMUSG00000028322.12	ENSMUST00000130843.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATCTGTGCTGCATGTA	3	True	NA	NA	False	NA	NA	NA	45320604	45317488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_45317830_45319549_45319700_45320270
ES_00041256	chr4	-	4385	2	FSM	ENSMUSG00000045973.19_ENSMUSG00002074999.1	ENSMUST00000151516.2	718	2	10	-3677	10	-2	multi-exon	FALSE	canonical	3	79	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTCGGTTGCTCTTTGG	4600	False	NA	-1	True	ATTAAA	-15	NA	45404856	45395924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_45400180_45404726
ES_00041257	chr4	-	2705	5	FSM	ENSMUSG00000035551.7	ENSMUST00000044297.7	2864	5	108	51	108	-51	multi-exon	FALSE	canonical	1	2	junction_1	1.73205080756888	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTTCACCAATGTCAAAAA	153	False	NA	NA	False	NA	NA	NA	45826815	45809518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_45811381_45813392_45813551_45815471_45815589_45816277_45816388_45826357
ES_00041258	chr4	-	3561	10	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	-41	-8	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	73.3461268301718	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCAAACTAGGTGGGAAG	182	False	NA	-11	True	AATAAA	-17	NA	46138516	46114753	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_46117084_46119142_46119282_46119840_46119914_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138491
ES_00041260	chr4	-	1073	6	FSM	ENSMUSG00000028329.14	ENSMUST00000058232.11	1241	6	0	168	0	-168	multi-exon	FALSE	canonical	2	4	junction_1	31.2064095980297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGCTCTGGTGGAGAGC	4	True	NA	NA	False	NA	NA	NA	46196311	46155514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_46155827_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
ES_00041262	chr4	-	498	3	FSM	ENSMUSG00000066191.13	ENSMUST00000152479.2	762	3	0	264	0	-264	multi-exon	FALSE	canonical	1	2	junction_2	0.5	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCGGTGAACCAAGGACC	NA	False	NA	NA	False	NA	NA	NA	47025710	47017263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_47017620_47023743_47023861_47025685
ES_00041263	chr4	-	201	1	Intergenic	novelGene_2767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	369	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAATTTGGTTTCTTGT	NA	False	NA	NA	False	AAAAAG	-2	NA	48360706	48360505	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_48360500_48360700
ES_00041264	chr4	-	227	2	Intergenic	novelGene_2785	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	55436266	55404543	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_55404582_55436077
ES_00041265	chr4	-	522	2	FSM	ENSMUSG00000003032.9	ENSMUST00000129250.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	3	1311	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGCCGAGAATCTGCGCC	1556	False	NA	NA	False	NA	NA	NA	55531770	55530602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_55530984_55531629
ES_00041268	chr4	-	6886	25	NIC	ENSMUSG00000028434.13	novel	6746	26	NA	NA	-278	-21	combination_of_known_splicesites	TRUE	canonical	3	20	junction_2	61.2422188935052	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTAAAAATGAAAATGAA	-10	True	NA	NA	False	AATAAA	-11	NA	57143715	56991992	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_56995804_56999581_56999728_57007905_57007978_57016853_57016932_57019771_57019959_57024337_57024437_57027608_57027677_57032114_57032241_57038502_57038622_57040843_57041053_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57076913_57077003_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423_57103529_57142847
ES_00041269	chr4	-	435	2	FSM	ENSMUSG00000038764.15	ENSMUST00000123664.2	480	2	0	45	0	-45	multi-exon	FALSE	canonical	3	46	junction_1	0	1451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCCTCAGGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	57222054	57218391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57218670_57221897
ES_00041270	chr4	-	800	10	FSM	ENSMUSG00000038764.15	ENSMUST00000153926.8	800	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	6.48264539813992	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATCTAATGATCGGGATT	8	True	NA	NA	False	NA	NA	NA	57300375	57245050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300280
ES_00041271	chr4	-	224	1	FSM	ENSMUSG00000081540.4	ENSMUST00000120064.2	486	1	-34	296	-34	-296	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTGGGCATGTACGTC	NA	False	NA	NA	False	NA	NA	NA	57414230	57414006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57414000_57414200
ES_00041275	chr4	-	4615	42	FSM	ENSMUSG00000050812.19	ENSMUST00000149301.8	4615	42	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_41	32.1885433042191	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATCTGAAAAAGAAGAG	-1	True	NA	NA	False	NA	NA	NA	58911930	58811430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58905003_58905108_58911868
ES_00041278	chr4	-	2338	10	FSM	ENSMUSG00000038598.10	ENSMUST00000122832.2	2338	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	4.47489568124495	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTAAGACCTATTGTAAG	6725	False	NA	NA	False	AATAAA	-12	NA	59111113	59081131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879_59086982_59092350_59092502_59093848_59093934_59094129_59094284_59099251_59099431_59109585_59109668_59111092
ES_00041280	chr4	-	564	1	FSM	ENSMUSG00000083979.2	ENSMUST00000117967.2	564	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGACAGGCTGAAGAGCT	NA	False	NA	NA	False	NA	NA	NA	59368866	59368302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59368300_59368900
ES_00041281	chr4	-	6787	15	NNC	ENSMUSG00000028382.16	novel	6640	15	NA	NA	0	36232	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	44.2677959142088	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGCTTTCTCAAAGG	62	False	NA	NA	False	NA	NA	NA	59549257	59435635	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_59435678_59471870_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59549147
ES_00041284	chr4	-	4198	28	NIC	ENSMUSG00000066151.13	novel	4264	28	NA	NA	32	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	24.7540992988791	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGTTGTGTTCCTTTTT	7027	False	NA	-4	True	AATAAA	-43	NA	62278674	62218581	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239225_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
ES_00041287	chr4	-	391	2	FSM	ENSMUSG00000028394.10	ENSMUST00000129930.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAGCTCTAGAAGGTA	NA	False	NA	NA	False	NA	NA	NA	62443275	62442571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62442674_62442986
ES_00041288	chr4	-	5271	22	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	-7330	2	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	7.87947763499926	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCTGTGCTGTGTAT	NA	False	NA	NA	False	AATAAA	-40	NA	63328921	63285359	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111_63316477_63328903
ES_00041291	chr4	-	4359	14	NIC	ENSMUSG00000039137.19	novel	4049	13	NA	NA	-88	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	14.0527324723994	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGGCCAGTGTTCTAT	4390	False	NA	-10	True	AATAAA	-15	NA	63414316	63333149	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658_63337731_63347322_63347356_63347469_63347655_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ES_00041292	chr4	-	5582	2	Antisense	novelGene_ENSMUSG00000039005.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTTACGTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	66827871	66820317	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_66825875_66827846
ES_00041293	chr4	-	5248	34	FSM	ENSMUSG00000039298.17	ENSMUST00000076541.13	5248	34	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_25	53.7141876766224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCAGCTGCCTCTGTCCTC	NA	False	NA	-4	True	AATAAA	-15	NA	70328655	70141259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70319481_70319550_70321710_70321779_70328448
ES_00041294	chr4	-	6141	6	FSM	ENSMUSG00000039270.10	ENSMUST00000107359.9	7924	6	0	1783	0	-1783	multi-exon	FALSE	canonical	1	2	junction_2	4.93963561409139	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGATTCGTTTCACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	70453165	70347084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_70351769_70353453_70353724_70366899_70367044_70374097_70374238_70406367_70406570_70452464
ES_00041298	chr4	-	2071	8	NNC	ENSMUSG00000008305.19	novel	2067	7	NA	NA	58	-2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	129.725927734322	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGGCCTGTGTTCTAAT	NA	False	NA	-2	True	AATAAA	-18	NA	72119033	72075818	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_72076655_72079304_72079377_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00041299	chr4	-	1274	1	FSM	ENSMUSG00000059343.5	ENSMUST00000179234.2	2050	1	205	571	205	-571	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCCAGTAAACAACTATT	NA	False	NA	NA	False	NA	NA	NA	72770664	72769390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_72769400_72770700
ES_00041300	chr4	-	438	1	FSM	ENSMUSG00000081871.2	ENSMUST00000117277.2	863	1	32	393	32	-393	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAAGTAGATACCATCA	NA	False	NA	NA	False	AGTAAA	-6	NA	73416682	73416244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_73416200_73416700
ES_00041301	chr4	-	1911	8	ISM	ENSMUSG00000028402.19	ENSMUST00000134726.8	1773	12	7847	-801	334	-32	3prime_fragment	FALSE	canonical	2	7	junction_1	3.38061701891407	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAATAAGTTTCTGTG	NA	False	NA	NA	False	ATTAAA	-2	NA	81205974	81196773	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_81198007_81199937_81200062_81200893_81201007_81201569_81201675_81202813_81202937_81203699_81203744_81204604_81204696_81205896
ES_00041305	chr4	-	1915	19	NNC	ENSMUSG00000038172.15	novel	1804	16	NA	NA	12	-5748	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	56.8609143458572	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATGTCAGGTCTCCTGG	NA	False	NA	NA	False	CATAAA	-17	NA	83242414	83150403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_83150608_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ES_00041306	chr4	-	205	1	Intergenic	novelGene_2807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAAATTGATG	6521	False	NA	NA	False	NA	NA	NA	83259538	83259333	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_83259300_83259500
ES_00041308	chr4	-	904	1	FSM	ENSMUSG00000078480.4	ENSMUST00000121413.2	636	1	-65	-203	-65	203	mono-exon	FALSE	NA	NA	NA	NA	NA	1996	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAGAGAGAGATAAAAC	4736	False	NA	NA	False	AATAAA	-31	NA	88518112	88517208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_88517200_88518100
ES_00041313	chr4	-	210	1	Intergenic	novelGene_2815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATGACTAGGAAACCAT	NA	False	NA	NA	False	AAAAAG	-1	NA	94542070	94541860	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_94541900_94542100
ES_00041315	chr4	-	905	1	FSM	ENSMUSG00000084159.2	ENSMUST00000122361.2	905	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACGTAGTGGAGCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	97410569	97409664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_97409700_97410600
ES_00041316	chr4	-	7121	49	FSM	ENSMUSG00000028556.16	ENSMUST00000030286.14	7127	49	6	0	6	0	multi-exon	FALSE	canonical	3	14	junction_27	28.048685042955	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAATCTAATGCCAGT	NA	False	NA	NA	False	AATAAA	-22	NA	99009146	98824907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98835001_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98881883_98881974_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ES_00041318	chr4	-	6707	49	FSM	ENSMUSG00000028556.16	ENSMUST00000075836.12	6704	49	0	-3	0	0	multi-exon	FALSE	canonical	3	12	junction_8	28.4259515622999	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGAGTGGGATTTTAA	NA	False	NA	-3	True	ATTAAA	-22	NA	99008999	98825090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98834992_98842102_98842118_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ES_00041322	chr4	-	785	2	FSM	ENSMUSG00000086096.2	ENSMUST00000136525.2	701	2	-74	-10	-74	10	multi-exon	FALSE	canonical	2	4	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACGGTGCGTAGCGTGAAA	NA	False	NA	0	True	AATAAA	-29	NA	99543294	99541833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_99542477_99543152
ES_00041323	chr4	-	497	1	FSM	ENSMUSG00000065451.3	ENSMUST00000083517.3	83	1	0	-414	0	414	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAATGGATAGTGACAT	NA	False	NA	-5	True	AATAAA	-13	NA	101204224	101203727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_101203700_101204200
ES_00041324	chr4	-	1047	5	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9913	15882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.796601655562	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTTTACTAACGTGT	NA	False	NA	NA	False	NA	NA	NA	101760899	101731334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101731364_101747219_101747741_101747885_101748198_101760342_101760431_101760802
ES_00041326	chr4	-	2273	4	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9734	1402	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	5.43650214343336	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCTTCAAAATCAGAGAT	NA	False	NA	NA	False	NA	NA	NA	101828512	101823247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101824980_101825125_101825438_101827043_101827123_101828362
ES_00041329	chr4	-	279	1	FSM	ENSMUSG00000081819.2	ENSMUST00000118507.2	493	1	307	-93	307	93	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTTCTACAACAGATATT	NA	False	NA	NA	False	NA	NA	NA	105231836	105231557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_105231600_105231800
ES_00041330	chr4	-	2770	4	FSM	ENSMUSG00000025418.8	ENSMUST00000054472.4	2756	4	0	-14	0	14	multi-exon	FALSE	canonical	2	6	junction_2	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAAATTCTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	106349480	106340638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_106342643_106343780_106344036_106345175_106345268_106349061
ES_00041335	chr4	-	219	1	Intergenic	novelGene_2835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGGGGCAAACCAAAACTA	NA	False	NA	NA	False	NA	NA	NA	107289235	107289016	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_107289000_107289200
ES_00041336	chr4	-	373	1	FSM	ENSMUSG00000084874.5	ENSMUST00000154610.2	441	1	152	-84	152	84	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTAACCTTGGCAC	NA	False	NA	NA	False	NA	NA	NA	107617510	107617137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107617100_107617500
ES_00041339	chr4	-	804	5	FSM	ENSMUSG00000028603.16	ENSMUST00000106701.2	772	5	-32	0	-32	0	multi-exon	FALSE	canonical	3	566	junction_3	53.5601297608585	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTACTGTGCTTGATG	NA	False	NA	NA	False	NA	NA	NA	107928648	107901746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453
ES_00041340	chr4	-	283	1	FSM	ENSMUSG00000083783.2	ENSMUST00000119769.2	382	1	215	-116	215	116	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGTAAACTGTGGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	108341534	108341251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108341300_108341500
ES_00041343	chr4	-	6459	19	FSM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.31771954481311	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTACACTCTTGATTTT	634	False	NA	NA	False	NA	NA	NA	108637995	108494662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_108496618_108499284_108499462_108501532_108501639_108507380_108507544_108514123_108514205_108517761_108517913_108531649_108531755_108534906_108534990_108538098_108538324_108539330_108539487_108542105_108542229_108546345_108546467_108548818_108548989_108550516_108550694_108552965_108553066_108574985_108577010_108581003_108581110_108584652_108584743_108637649
ES_00041344	chr4	-	2935	7	NNC	ENSMUSG00000028568.17	novel	624	7	NA	NA	0	5371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416.198970846077	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGATTGCAATGAAAT	NA	False	NA	NA	False	NA	NA	NA	108690751	108666120	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_108666151_108671667_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ES_00041347	chr4	-	1159	1	FSM	ENSMUSG00000083512.2	ENSMUST00000122138.2	1159	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCCAGTGCTGCAGTTA	NA	False	NA	NA	False	TATAAA	-13	NA	109232056	109230897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_109230900_109232100
ES_00041348	chr4	-	2454	1	FSM	ENSMUSG00000083995.2	ENSMUST00000120597.2	404	1	-1212	-838	-1212	838	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCTAAAATGGAAGACTAC	NA	False	NA	NA	False	NA	NA	NA	109613226	109610772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_109610800_109613200
ES_00041349	chr4	-	205	1	FSM	ENSMUSG00000082348.2	ENSMUST00000121546.2	962	1	286	471	286	-471	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAACCCTGGCTTGTGGA	NA	False	NA	NA	False	NA	NA	NA	110370643	110370438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_110370400_110370600
ES_00041352	chr4	-	2784	14	FSM	ENSMUSG00000034171.14	ENSMUST00000150668.8	2802	14	18	0	7	0	multi-exon	FALSE	canonical	3	38	junction_1	8.4538426541604	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTGGGTATTTTTCT	NA	False	NA	NA	False	AAAAAG	-15	NA	115874906	115855389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
ES_00041354	chr4	-	1199	6	FSM	ENSMUSG00000028706.15	ENSMUST00000165493.8	3920	6	2721	0	-1263	0	multi-exon	TRUE	canonical	1	3	junction_5	45.6832573269464	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCCAGCTCTGGATTAT	NA	False	NA	NA	False	NA	NA	NA	115907856	115891103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115907838
ES_00041355	chr4	-	427	2	FSM	ENSMUSG00000063882.13	ENSMUST00000142468.2	423	2	0	-4	0	3	multi-exon	FALSE	canonical	3	1072	junction_1	0	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCCTTCCTTTGCCATA	NA	False	NA	-4	True	AATAAA	-20	NA	115927275	115924158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115924370_115927059
ES_00041356	chr4	-	2984	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980853	115954112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
ES_00041357	chr4	-	2051	14	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	168.815714796136	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980856	115954112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115976034_115976155_115980092_115980180_115980258_115980346_115980697
ES_00041358	chr4	-	5649	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	54	39	54	-39	multi-exon	FALSE	canonical	3	8	junction_1	0	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAATCTGAAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	116001752	115989641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115995032_116001493
ES_00041359	chr4	-	5832	29	NIC	ENSMUSG00000003810.14	novel	5292	30	NA	NA	-129	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_1	46.5144672469255	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGCCTGTGTTTGCTTC	8358	False	NA	-2	True	AATACA	-16	NA	116321509	116163958	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_116165532_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ES_00041362	chr4	-	2956	15	NNC	ENSMUSG00000028693.16	novel	2118	14	NA	NA	-365	64146	intron_retention	FALSE	non_canonical	0	0	junction_1	425.355937385841	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCCTCCCCCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	116485503	116394102	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_116394129_116458245_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ES_00041363	chr4	-	1461	13	FSM	ENSMUSG00000028693.16	ENSMUST00000081182.5	1461	13	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	454.190572765319	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116484675	116458805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116476066_116476178_116479963_116480012_116484528
ES_00041364	chr4	-	4974	7	FSM	ENSMUSG00000028693.16	ENSMUST00000155398.8	1216	7	-3758	0	-3758	0	multi-exon	FALSE	canonical	3	1005	junction_5	157.395114988434	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATTTATATGAACTTTT	NA	False	NA	NA	False	NA	NA	NA	116467203	116459922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880
ES_00041365	chr4	-	598	4	FSM	ENSMUSG00000028684.15	ENSMUST00000150370.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_2	13.9602610609146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCCTTTCTGCTCAAGT	NA	False	NA	-87	True	NA	NA	NA	116849083	116847481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817
ES_00041367	chr4	-	1966	4	FSM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	2	-12	2	12	multi-exon	FALSE	canonical	3	30	junction_2	4.96655480858378	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCAAGTTTCTGGTTTG	NA	False	NA	-2	True	NA	NA	NA	116979525	116976403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116978059_116978394_116978527_116978610_116978680_116979415
ES_00041368	chr4	-	2449	7	NIC	ENSMUSG00000073771.12	novel	1620	8	NA	NA	-31	4	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	7.02376916856849	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCAGCATTCAAGTTT	9676	False	NA	-10	True	NA	NA	NA	116982886	116976411	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116982525
ES_00041376	chr4	-	1560	11	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	72	junction_10	51.6295458047037	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTCCTCACTTCCTCA	NA	False	NA	-32	True	AATAGA	-23	NA	117539450	117531874	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
ES_00041377	chr4	-	1388	1	FSM	ENSMUSG00000084260.2	ENSMUST00000119463.2	582	1	-223	-583	-223	583	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACCCCAGACTAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-7	NA	117586719	117585331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117585300_117586700
ES_00041378	chr4	-	4465	14	NIC	ENSMUSG00000028541.15	novel	4093	13	NA	NA	1	-1	intron_retention	FALSE	canonical	1	2	junction_3	33.2134926599802	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTAGTTCTGCACACACT	NA	False	NA	NA	False	ATTAAA	-17	NA	117740683	117726457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117727026_117727106_117727186_117727302_117727373_117727712_117727768_117728260_117728387_117728943_117729058_117729185_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972_117739015_117740298
ES_00041383	chr4	-	2558	4	FSM	ENSMUSG00000028540.7	ENSMUST00000139332.2	2558	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	7.78888096369861	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749217	117746103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117746874_117746951_117748316_117748511_117748625_117748906
ES_00041385	chr4	-	744	3	FSM	ENSMUSG00000033295.15	ENSMUST00000143348.2	744	3	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_2	29.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAAGAACCGGGCTGGCC	3477	False	NA	NA	False	NA	NA	NA	118088297	118083354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118083575_118083650_118083769_118087891
ES_00041387	chr4	-	443	3	FSM	ENSMUSG00000033253.19	ENSMUST00000136737.2	444	3	0	1	0	-1	multi-exon	FALSE	canonical	3	9	junction_1	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGGCGAGGGTGTGTG	1799	False	NA	NA	False	NA	NA	NA	118247130	118246330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118246446_118246569_118246739_118246971
ES_00041388	chr4	-	929	4	FSM	ENSMUSG00000050854.10	ENSMUST00000128098.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACCCTGGCTGGGCTGG	8009	False	NA	NA	False	NA	NA	NA	118401241	118399055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118401129
ES_00041389	chr4	-	6954	8	NNC	ENSMUSG00000078584.10	novel	657	6	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	174.518813675004	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTTGCTTGTTCCCC	NA	False	NA	NA	False	NA	NA	NA	119089875	119077042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_119077421_119077466_119077513_119077600_119079545_119079569_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ES_00041390	chr4	-	704	5	NNC	ENSMUSG00000078584.10	novel	7151	5	NA	NA	5	174	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	164.079820514285	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089870	119083404	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089821
ES_00041391	chr4	-	808	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	3	-11	3	11	multi-exon	FALSE	canonical	2	32	junction_8	163.771144144263	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTATTTGTATTGTTCA	9585	False	NA	8	True	AATAAA	-30	NA	119177740	119157195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ES_00041393	chr4	-	2436	10	FSM	ENSMUSG00000028637.17	ENSMUST00000154606.9	2724	10	28	260	19	-260	multi-exon	FALSE	canonical	2	5	junction_1	6.06345051095211	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGATCCCCCTAGAACTT	2152	False	NA	NA	False	NA	NA	NA	119217064	119180349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119181391_119181737_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754
ES_00041394	chr4	-	1084	4	FSM	ENSMUSG00000028637.17	ENSMUST00000131141.3	1128	4	47	-3	19	2	multi-exon	FALSE	canonical	2	12	junction_1	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTAGTAATTTCTA	2152	False	NA	NA	False	NA	NA	NA	119217064	119209440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754
ES_00041398	chr4	-	2348	7	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-67	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	18	junction_2	12.1928941054479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	6769	False	NA	NA	False	NA	NA	NA	120808963	120787333	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_120788704_120791529_120791626_120792263_120792391_120804485_120804596_120804673_120804767_120806528_120806758_120808640
ES_00041399	chr4	-	237	2	Intergenic	novelGene_2872	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAATGTGGTG	NA	False	NA	NA	False	NA	NA	NA	120856058	120805078	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_120805111_120855853
ES_00041402	chr4	-	1177	10	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_9	309.335169215497	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTGCCTCCTGCAAG	NA	False	NA	-17	True	AATAAA	-22	NA	123033744	123020910	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033702
ES_00041404	chr4	-	17175	90	FSM	ENSMUSG00000028649.22	ENSMUST00000151346.8	17175	90	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_67	77.7362017076168	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTAATTCTTGGCTT	6285	False	NA	-8	True	ATTAAA	-18	NA	123438624	123243508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437_123278665_123279247_123279480_123281020_123281225_123282911_123283131_123284316_123284425_123284843_123284964_123287862_123288070_123288798_123289041_123289705_123289791_123290886_123291214_123291540_123291701_123293135_123293303_123295185_123295357_123295543_123295706_123325790_123327263_123328492_123328989_123332259_123332460_123333233_123333364_123334342_123334585_123335395_123335459_123338627_123338746_123341894_123342052_123343750_123343918_123345825_123346144_123346613_123346823_123348786_123348911_123349150_123349328_123350023_123350543_123351579_123351805_123352946_123353181_123354877_123355028_123373979_123374116_123377439_123377529_123377819_123377973_123380121_123380221_123380459_123380568_123382121_123382206_123383002_123383166_123384380_123384575_123385486_123385626_123386433_123386613_123386878_123387049_123387727_123387912_123388676_123388804_123391520_123391676_123393665_123393819_123395956_123396083_123396976_123397073_123398237_123398343_123400124_123400287_123401076_123401155_123402205_123402335_123403564_123403842_123404437_123404593_123404738_123404833_123404910_123405039_123405598_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123438534
ES_00041405	chr4	-	17647	95	NIC	ENSMUSG00000028649.22	novel	17268	94	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_29	79.9986475666579	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTAATTCTTGGCTT	7085	False	NA	-8	True	ATTAAA	-18	NA	123558545	123243508	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437_123278665_123279247_123279480_123280341_123280351_123281020_123281225_123282911_123283131_123284316_123284425_123284843_123284964_123287862_123288070_123288798_123289041_123289705_123289791_123290886_123291214_123291540_123291701_123293135_123293303_123295185_123295357_123295543_123295706_123325790_123327263_123328492_123328989_123332259_123332460_123333233_123333364_123334342_123334585_123335395_123335459_123338627_123338746_123341894_123342052_123343750_123343918_123345825_123346144_123346613_123346823_123348786_123348911_123349150_123349328_123350023_123350543_123351579_123351805_123352946_123353181_123354877_123355028_123373979_123374116_123377439_123377529_123377819_123377973_123380121_123380221_123380459_123380568_123382121_123382206_123383002_123383166_123384380_123384575_123385486_123385626_123386433_123386613_123386878_123387049_123387727_123387912_123388676_123388804_123391520_123391676_123393665_123393819_123395956_123396083_123396976_123397073_123398237_123398343_123400124_123400287_123401076_123401155_123402205_123402335_123403564_123403842_123404437_123404593_123404738_123404833_123404910_123405039_123405598_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123436284_123436381_123438534_123438625_123448096_123448159_123558258
ES_00041409	chr4	-	757	2	NNC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	-2976	-144736	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGTGTCCCACTGTGGA	NA	False	NA	NA	False	NA	NA	NA	123581129	123577408	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_123578035_123580998
ES_00041412	chr4	-	206	1	FSM	ENSMUSG00000085875.4	ENSMUST00000163208.2	279	1	272	-199	272	31	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGGGCTCCAAGCCTCAC	NA	False	NA	NA	False	NA	NA	NA	123799029	123798823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123798800_123799000
ES_00041413	chr4	-	3261	1	FSM	ENSMUSG00000085875.4	ENSMUST00000238344.2	2706	1	256	-811	255	811	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGTGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	123811560	123808299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123808300_123811600
ES_00041415	chr4	-	921	9	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	68267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	488.029968342109	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTTCTTCTTTCATGTC	NA	False	NA	NA	False	NA	NA	NA	124587327	124503685	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_124503719_124572601_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ES_00041416	chr4	-	645	5	FSM	ENSMUSG00000028873.17	ENSMUST00000125801.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	172.905140178076	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGGCTTCTCTGGCA	NA	False	NA	NA	False	AATACA	-42	NA	124830574	124817416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ES_00041418	chr4	-	761	2	FSM	ENSMUSG00000086342.2	ENSMUST00000143705.2	620	2	-79	-62	-79	62	multi-exon	FALSE	canonical	0	0	junction_1	0	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGGGTTTTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	124978819	124976587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124976857_124978327
ES_00041419	chr4	-	2174	6	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	16792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	344.93048575039	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTGCAGAGGTCAGAGG	2986	False	NA	NA	False	NA	NA	NA	126067320	126041082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126041109_126057874_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236
ES_00041420	chr4	-	2172	6	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	16792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	344.93048575039	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTGCAGAGGTCAGAGG	2986	False	NA	NA	False	NA	NA	NA	126067320	126041082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126041111_126057878_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236
ES_00041421	chr4	-	4402	13	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	16792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.28978693347	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTGCAGAGGTCAGAGG	6764	False	NA	NA	False	NA	NA	NA	126096463	126041082	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126041109_126057874_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ES_00041424	chr4	-	3442	3	FSM	ENSMUSG00000043962.17	ENSMUST00000140390.2	2656	3	-786	0	-786	0	multi-exon	FALSE	canonical	3	779	junction_2	62	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGGACTGTGTTTGTTG	7278	False	NA	-7	True	AATAAA	-24	NA	126063028	126057878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126059411_126060723_126060868_126061262
ES_00041425	chr4	-	4050	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	19	679	combination_of_known_splicesites	FALSE	canonical	3	48	junction_11	233.690725900496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCAGTTTGGGACCAAAC	7077	False	NA	NA	False	AATAAA	-14	NA	126096150	126058654	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126095595
ES_00041428	chr4	-	231	1	FSM	ENSMUSG00000084504.3	ENSMUST00000122555.3	103	1	-192	64	-192	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGATTAGCAATGGCCC	7965	False	NA	NA	False	NA	NA	NA	126095262	126095031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126095000_126095300
ES_00041429	chr4	-	3288	16	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	12	0	intron_retention	FALSE	canonical	3	98	junction_11	48.1315789153949	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150124	126125959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ES_00041430	chr4	-	3390	17	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	12	0	intron_retention	FALSE	canonical	3	52	junction_12	62.4189474438652	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150124	126125959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ES_00041431	chr4	-	1834	4	FSM	ENSMUSG00000042558.17	ENSMUST00000128188.8	1826	4	0	-8	0	3	multi-exon	FALSE	canonical	3	330	junction_1	27.3901847788988	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTTCCTGTCTCCAC	7312	False	NA	NA	False	AATAAA	-23	NA	126215260	126209836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126210659_126211095_126211985_126212191_126212289_126215234
ES_00041433	chr4	-	15595	19	FSM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	10.4927958825138	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTGTCTTCAGTATTTC	2364	False	NA	2	True	AATAAA	-15	NA	126323349	126226524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126239376_126240423_126240624_126241560_126241663_126243978_126244114_126244647_126244843_126247473_126247565_126248798_126248959_126257438_126257624_126261440_126261575_126262276_126262400_126264055_126264176_126265260_126265409_126265531_126265620_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
ES_00041434	chr4	-	6997	29	NNC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	51	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	61.9432240862879	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGGGTGAGTTCTTTT	NA	False	NA	-15	True	AATAAA	-15	NA	126861877	126755736	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794539_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126861608
ES_00041435	chr4	-	6448	27	NNC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_25	78.8485928328209	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTGATGGGTGAGTT	NA	False	NA	-20	True	AATAAA	-10	NA	126861928	126755741	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793877_126794397_126794539_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126842226_126842273_126861608
ES_00041437	chr4	-	212	1	Intergenic	novelGene_2912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTTATTCTTACTGT	NA	False	NA	NA	False	NA	NA	NA	126883060	126882848	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_126882800_126883100
ES_00041438	chr4	-	2354	5	FSM	ENSMUSG00000043872.15	ENSMUST00000152607.8	2354	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	205.736481937453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAACTTGCAACTTTGAG	NA	False	NA	NA	False	AATGAA	-11	NA	126954853	126941434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126943406_126944356_126944395_126944536_126944666_126945067_126945219_126954788
ES_00041439	chr4	-	2982	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106099.8	2982	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	144.172515708488	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAACTTGCAACTTTGAG	NA	False	NA	NA	False	AATGAA	-11	NA	126954917	126941434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126943406_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ES_00041443	chr4	-	2987	2	FSM	ENSMUSG00000061894.16	ENSMUST00000151226.2	3323	2	7	329	7	-329	multi-exon	FALSE	canonical	3	16	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACAGAAGGATGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	128503820	128495552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_128498506_128503786
ES_00041444	chr4	-	1136	7	FSM	ENSMUSG00000028799.16	ENSMUST00000170934.3	1136	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	5.42883249163411	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTCTTGCTGCCTGGCA	NA	False	NA	NA	False	NA	NA	NA	128699838	128670876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_128671036_128671160_128671240_128679762_128679988_128680685_128681014_128683656_128683904_128684042_128684107_128699804
ES_00041448	chr4	-	4284	6	NIC	ENSMUSG00000040928.16	novel	4426	7	NA	NA	5	10	intron_retention	FALSE	canonical	2	7	junction_5	75.8762149820351	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCCGTCTGTTCCGGGC	1223	False	NA	5	True	AATAAA	-25	NA	129083300	129041787	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129083164
ES_00041449	chr4	-	4276	6	NIC	ENSMUSG00000040928.16	novel	1053	7	NA	NA	0	9	intron_retention	FALSE	canonical	3	52	junction_5	57.9931030382062	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCCGTCTGTTCCGGG	1060	False	NA	4	True	AATAAA	-24	NA	129083463	129041788	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129083334
ES_00041450	chr4	-	2589	7	FSM	ENSMUSG00000040928.16	ENSMUST00000151971.8	2589	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	76.8649609524536	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTACTGTCTTGAATTTTT	1153	False	NA	NA	False	TTTAAA	-26	NA	129083370	129044618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129075634_129075759_129075894_129076001_129076326_129083334
ES_00041453	chr4	-	414	4	FSM	ENSMUSG00000050390.13	ENSMUST00000145261.8	414	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	119.806325190098	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAGAGGTGTGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	129155197	129119152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129119266_129119499_129119556_129119635_129119807_129155123
ES_00041454	chr4	-	876	5	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	474.874983548302	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2492	False	NA	-29	True	AATAAA	-14	NA	129229163	129203309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129203673_129216596_129216663_129222380_129222527_129228289_129228438_129229010
ES_00041455	chr4	-	1978	5	NNC	ENSMUSG00000028807.3	novel	2321	5	NA	NA	3838	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	63.2509881345738	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	728	False	NA	0	True	AATAAA	-24	NA	129268071	129247420	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129268037
ES_00041456	chr4	-	844	2	FSM	ENSMUSG00000028800.16	ENSMUST00000145628.2	844	2	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTCTGTTTATACCTTC	NA	False	NA	NA	False	NA	NA	NA	129411311	129410060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129410742_129411148
ES_00041459	chr4	-	1145	13	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	0	61455	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	527.473854012374	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAGAAAACCAAGCCGGG	6377	False	NA	NA	False	NA	NA	NA	129494441	129424297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129424315_129441068_129441088_129485766_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
ES_00041461	chr4	-	1178	11	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	0	4595	intron_retention	FALSE	canonical	0	0	junction_1	423.209404432368	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAGAAAAGGAAAAAAG	6426	False	NA	NA	False	NA	NA	NA	129494392	129481157	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129481184_129485766_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
ES_00041462	chr4	-	2641	6	NNC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	0	36	at_least_one_novel_splicesite	TRUE	non_canonical	3	55	junction_1	30.2747419477029	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGTATGTATATAAGTA	NA	False	NA	NA	False	NA	NA	NA	129512889	129508882	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129510005_129510035_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ES_00041463	chr4	-	701	4	FSM	ENSMUSG00000040795.13	ENSMUST00000131559.2	717	4	0	16	0	-16	multi-exon	FALSE	canonical	1	3	junction_3	55.9305124437656	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGACTAACTGAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	129512869	129511150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129511252_129511456_129511710_129512284_129512429_129512666
ES_00041465	chr4	-	2727	10	NNC	ENSMUSG00000028790.14	novel	3738	9	NA	NA	0	44412	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.812020819489	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGCCCAGGCCAGAGAC	4981	False	NA	NA	False	NA	NA	NA	129636089	129552544	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129552571_129608648_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571
ES_00041466	chr4	-	2726	10	NNC	ENSMUSG00000028790.14	novel	3738	9	NA	NA	0	44412	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.812020819489	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGCCCAGGCCAGAGAC	4981	False	NA	NA	False	NA	NA	NA	129636089	129552544	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129552570_129608648_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571
ES_00041469	chr4	-	926	3	Intergenic	novelGene_2939	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	7	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAAAAAAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	130362535	130354837	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_130355498_130359962_130360111_130362417
ES_00041470	chr4	-	522	1	FSM	ENSMUSG00000083013.2	ENSMUST00000121250.2	522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTTGTCAGGATGCTGC	NA	False	NA	NA	False	NA	NA	NA	131630622	131630100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131630100_131630600
ES_00041471	chr4	-	5116	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	10	-8	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	37.3644050592552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGCCTGACTGTGA	5319	False	NA	NA	False	AATAAA	-13	NA	131802622	131650731	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695284_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ES_00041473	chr4	-	2184	10	NNC	ENSMUSG00000028901.14	novel	1925	10	NA	NA	5	-304	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_9	16.1528195757556	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGATGGCCTCAGAT	1998	False	NA	NA	False	NA	NA	NA	131988827	131952633	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979141_131988801
ES_00041474	chr4	-	1794	8	FSM	ENSMUSG00000028898.16	ENSMUST00000146166.8	1791	8	0	-3	0	1	multi-exon	FALSE	canonical	3	451	junction_7	40.7315752763111	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTTCTTCAACTGTATT	2338	False	NA	1	True	AATAAA	-18	NA	132056827	132039072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132053357_132055779_132055878_132056663
ES_00041476	chr4	-	715	3	FSM	ENSMUSG00000028896.14	ENSMUST00000137238.2	715	3	0	0	0	0	multi-exon	TRUE	canonical	1	6	junction_2	27.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGTTCCTCTGAGGCTGC	5829	False	NA	NA	False	AATATA	-31	NA	132072668	132066271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132066553_132067235_132067318_132072316
ES_00041477	chr4	-	404	2	ISM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	10	388	10	-318	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAATTCCTAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	132080934	132079632	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_132080010_132080907
ES_00041478	chr4	-	4455	14	NNC	ENSMUSG00000066043.14	novel	4614	14	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	non_canonical	3	55	junction_1	14.2047579327841	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTGTTACTTTTTA	NA	False	NA	NA	False	ATTAAA	-24	NA	132149752	132083232	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132083758_132083788_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
ES_00041479	chr4	-	610	7	FSM	ENSMUSG00000066043.14	ENSMUST00000127516.2	684	7	0	74	0	-74	multi-exon	FALSE	canonical	0	0	junction_1	35.0590771254591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGCTATCAGGGAG	NA	False	NA	NA	False	NA	NA	NA	132097842	132088061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132088074_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836
ES_00041480	chr4	-	626	2	FSM	ENSMUSG00000066042.5	ENSMUST00000123604.2	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCAGGGGCACCCTGGCAT	1637	False	NA	NA	False	NA	NA	NA	132190642	132187265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132187425_132190175
ES_00041482	chr4	-	518	4	NNC	ENSMUSG00000054428.13	novel	539	3	NA	NA	0	48220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3850.34996966365	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGCTTGGGCCCGGGAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132209645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132209698_132257874_132258135_132260606_132260699_132260792
ES_00041483	chr4	-	1014	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132259798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132260699_132260792
ES_00041484	chr4	-	308	1	FSM	ENSMUSG00000065623.3	ENSMUST00000083689.3	104	1	38	-242	38	242	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATACGTGTAACACATAC	NA	False	NA	NA	False	NA	NA	NA	132274480	132274172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132274200_132274500
ES_00041485	chr4	-	3144	7	ISM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	1323	-1038	-261	0	3prime_fragment	FALSE	canonical	3	35	junction_3	34.4899341193276	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132648481	132626523	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037
ES_00041487	chr4	-	1738	1	FSM	ENSMUSG00000049649.9	ENSMUST00000105911.2	2518	1	540	240	540	-240	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGGGAATTGCAAACCGA	NA	False	NA	NA	False	NA	NA	NA	132938628	132936890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132936900_132938600
ES_00041489	chr4	-	1483	7	NNC	ENSMUSG00000028857.17	novel	1484	6	NA	NA	0	1820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	286.536016739413	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCCAAAAACAAAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	133005062	132991535	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132991576_132993355_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
ES_00041490	chr4	-	1435	6	NNC	ENSMUSG00000028857.17	novel	1484	6	NA	NA	3	1820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.52578857618	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCCAAAAACAAAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	133005100	132991535	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132991575_132993355_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
ES_00041491	chr4	-	4222	17	NNC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_1	180.439697336811	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCATTTGTTGGGGC	8378	False	NA	1	True	ATTAAA	-22	NA	133080801	133019769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_133021695_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029136_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096_133080261_133080600
ES_00041492	chr4	-	3746	15	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	21	-5	combination_of_known_splicesites	FALSE	canonical	3	12	junction_9	129.710450698501	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACTGGTGGCATTTGTT	9011	False	NA	-4	True	ATTAAA	-17	NA	133080168	133019774	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096
ES_00041496	chr4	-	260	3	FSM	ENSMUSG00000037553.15	ENSMUST00000142382.2	260	3	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	7	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGTTGCCCTCGCCCATC	NA	False	NA	NA	False	NA	NA	NA	133340345	133336049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133336085_133337680_133337794_133340233
ES_00041498	chr4	-	3147	23	NNC	ENSMUSG00000003644.18	novel	3085	22	NA	NA	0	4909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	260.061821162673	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGCTGGTGAGATGGCT	7977	False	NA	NA	False	NA	NA	NA	133615095	133569691	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_133569721_133574604_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
ES_00041499	chr4	-	2160	3	FSM	ENSMUSG00000003038.16	ENSMUST00000145025.8	2159	3	0	-1	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	483	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAGTTGTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	133695219	133692300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133692885_133693261_133693358_133693739
ES_00041506	chr4	-	731	2	Intergenic	novelGene_2965	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTGTGGCTTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	134163602	134161022	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_134161667_134163515
ES_00041507	chr4	-	1973	7	NIC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	192.098643641461	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCTTGGTTCATCTC	NA	False	NA	2	True	ATTAAA	-25	NA	134262355	134252865	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262215
ES_00041509	chr4	-	4132	3	FSM	ENSMUSG00000028826.15	ENSMUST00000150031.2	4132	3	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	22	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCCTGCCTTTTTAA	9697	False	NA	NA	False	AATAAA	-20	NA	134538524	134530069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_134534003_134536910_134537032_134538446
ES_00041510	chr4	-	4099	12	NIC	ENSMUSG00000028826.15	novel	3826	11	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	71.6409781624045	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCCTGCCTTTTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	134580661	134530069	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134564077_134564346_134565159_134565302_134580348
ES_00041511	chr4	-	220	3	NNC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	-33049	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	78	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTCGTTATACCTTATA	NA	False	NA	-17	True	ATTAAA	-22	NA	134675384	134625156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_134625317_134657375_134657407_134675355
ES_00041512	chr4	-	3742	18	FSM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	0	-2	0	2	multi-exon	FALSE	canonical	3	58	junction_11	319.821966045795	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	-5	True	AATAAA	-14	NA	135080555	135047799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067919_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ES_00041514	chr4	-	640	4	FSM	ENSMUSG00000043924.17	ENSMUST00000154518.2	640	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	6.59966329107444	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGGTTGTCATCATCA	5692	False	NA	NA	False	NA	NA	NA	135125538	135099247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135099273_135104301_135104385_135107962_135108150_135125193
ES_00041516	chr4	-	242	2	FSM	ENSMUSG00000028669.16	ENSMUST00000125394.2	242	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTCCTGTTTAATATT	2292	False	NA	NA	False	NA	NA	NA	135714398	135713724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135713747_135714178
ES_00041517	chr4	-	807	5	FSM	ENSMUSG00000059291.16	ENSMUST00000125726.8	807	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	4361.44284469027	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCT	NA	False	NA	-47	True	NA	NA	NA	135780307	135777300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877
ES_00041521	chr4	-	599	1	FSM	ENSMUSG00000083054.2	ENSMUST00000119037.2	967	1	185	183	185	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGGTGGCGGTAACTAT	NA	False	NA	NA	False	NA	NA	NA	136336932	136336333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_136336300_136336900
ES_00041525	chr4	-	849	3	FSM	ENSMUSG00000085823.8	ENSMUST00000155349.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611237	137609680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_137610210_137610538_137610721_137611099
ES_00041527	chr4	-	527	3	FSM	ENSMUSG00000050608.12	ENSMUST00000063040.12	436	3	-91	0	-91	0	multi-exon	FALSE	canonical	3	2580	junction_1	73	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCAAGCAATGCCTTT	3118	False	NA	-20	True	AATAAA	-16	NA	138833361	138831101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_138831324_138832300_138832411_138833166
ES_00041530	chr4	-	4443	27	NNC	ENSMUSG00000040964.17	novel	4382	27	NA	NA	8691	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_26	42.3527033291848	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140367370	140241795	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140367186
ES_00041531	chr4	-	240	3	Antisense	novelGene_ENSMUSG00002075547.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	291.5	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAACCAAAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	140444881	140409101	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_140409142_140442255_140442402_140444827
ES_00041534	chr4	-	1629	4	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	23330	-369	7019	369	intron_retention	FALSE	canonical	3	111	junction_1	6.94422221866655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	140478217	140472806	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659
ES_00041537	chr4	-	6582	37	FSM	ENSMUSG00000040860.17	ENSMUST00000102491.10	6582	37	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_36	18.7163690158055	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGTCCACTCAAATG	NA	False	NA	NA	False	NA	NA	NA	140781033	140743947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140780830
ES_00041543	chr4	-	454	3	FSM	ENSMUSG00000006216.11	ENSMUST00000135486.8	453	3	0	-1	0	1	multi-exon	FALSE	canonical	3	6	junction_2	38.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTCCCCTCTCCTCCCT	7135	False	NA	-3	True	AATAAA	-19	NA	141132668	141131662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_141131944_141132063_141132151_141132582
ES_00041546	chr4	-	445	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_3	48.9239773072014	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	476	False	NA	-2	True	AATAAA	-18	NA	141546572	141542272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546520
ES_00041547	chr4	-	706	6	ISM	ENSMUSG00000058579.6	ENSMUST00000102481.4	1070	8	3884	0	-3074	0	3prime_fragment	FALSE	canonical	1	1	junction_5	48.4866992071021	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	9836	False	NA	-2	True	AATAAA	-18	NA	141549587	141542272	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549540
ES_00041549	chr4	-	9420	8	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	-7	20071	-3	-20071	5prime_fragment	FALSE	canonical	3	22	junction_5	9.80420567815628	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGCATTTTGTCCATAAA	NA	False	NA	4	True	AATAAA	-24	NA	142939282	142854031	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_142862670_142868693_142868805_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
ES_00041550	chr4	-	9467	9	NNC	ENSMUSG00000057637.14	novel	7304	10	NA	NA	1	-20077	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	11.1439445440113	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGGACTGCATTTTGTC	NA	False	NA	-2	True	AATAAA	-18	NA	142939278	142854037	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_142862670_142868693_142868805_142871959_142872017_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
ES_00041551	chr4	-	226	1	FSM	ENSMUSG00000082575.2	ENSMUST00000122149.2	1345	1	361	758	361	-758	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCTTCCCTGATGGCCTG	NA	False	NA	NA	False	NA	NA	NA	142969577	142969351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_142969400_142969600
ES_00041552	chr4	-	2722	5	FSM	ENSMUSG00000028583.15	ENSMUST00000119654.2	762	5	-133	-1827	-32	912	multi-exon	FALSE	canonical	1	7	junction_2	239.080530365816	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCTTTCAAAATAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	143026166	142993088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_142994997_142995757_142995870_143000469_143000627_143002640_143002778_143025758
ES_00041553	chr4	-	1411	1	FSM	ENSMUSG00000044377.4	ENSMUST00000120556.2	420	1	-72	-919	-72	919	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAAATACATCTCTTTCT	NA	False	NA	NA	False	AATAAA	-24	NA	143338719	143337308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_143337300_143338700
ES_00041554	chr4	-	200	1	FSM	ENSMUSG00000083390.2	ENSMUST00000120637.2	632	1	112	320	112	-320	mono-exon	FALSE	NA	NA	NA	NA	NA	2056	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTCTGAGTACCGCCCC	NA	False	NA	NA	False	NA	NA	NA	144253500	144253300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_144253300_144253500
ES_00041555	chr4	-	5540	34	ISM	ENSMUSG00000020220.17	ENSMUST00000020441.13	15665	68	79550	2154	-19166	146	3prime_fragment	TRUE	canonical	2	10	junction_30	9.65987222033145	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAAGGTTTGTTACCTGT	NA	False	NA	10	True	AATACA	-29	NA	144837686	144701349	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405_144801642_144802279_144802404_144807870_144808047_144808250_144808382_144811861_144812005_144813273_144813401_144813694_144813887_144814760_144815009_144818431_144818643_144818774_144818926_144821393_144821442_144822755_144822892_144824580_144824734_144826534_144826641_144832368_144832492_144833499_144833641_144835074_144835165_144837401
ES_00041556	chr4	-	791	6	FSM	ENSMUSG00000020220.17	ENSMUST00000141208.8	3811	6	0	3020	0	-3020	multi-exon	FALSE	canonical	3	27	junction_5	6.01996677731696	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGGGGGGCTGTAAGA	5845	False	NA	NA	False	NA	NA	NA	144780713	144709887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686
ES_00041558	chr4	-	567	2	Intergenic	novelGene_3006	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGAATAGAACGTGAATA	NA	False	NA	NA	False	NA	NA	NA	145987458	145556189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_145556340_145987041
ES_00041559	chr4	-	897	1	Intergenic	novelGene_3007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	508	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	145987442	145986545	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_145986500_145987400
ES_00041561	chr4	-	2658	2	Intergenic	novelGene_3034	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146917176	146912352	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_146914904_146917069
ES_00041562	chr4	-	3220	5	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.527393833689	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146993984	146912352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146914277_146976152_146977116_146978205_146978333_146982168_146982273_146993882
ES_00041563	chr4	-	3405	7	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	0	63800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107.568195423492	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146993984	146912352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146914277_146976152_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991966_146992072_146993882
ES_00041564	chr4	-	3377	6	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.476582105359	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146914277_146976152_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993882
ES_00041567	chr4	-	307	1	FSM	ENSMUSG00000094017.2	ENSMUST00000118441.2	627	1	625	-305	625	305	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTTAGGATGTTG	NA	False	NA	NA	False	AGTAAA	-3	NA	147170816	147170509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147170500_147170800
ES_00041568	chr4	-	307	1	Antisense	novelGene_ENSMUSG00000067916.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTCTCCCTCCATGACTT	NA	False	NA	NA	False	AAGAAA	-28	NA	147216859	147216552	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_147216600_147216900
ES_00041569	chr4	-	1983	3	Antisense	novelGene_ENSMUSG00000078497.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	2	junction_2	14.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCTCACTATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	147477621	147475050	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_147475389_147475808_147476144_147476311
ES_00041571	chr4	-	1916	1	FSM	ENSMUSG00000081301.2	ENSMUST00000118377.2	400	1	-401	-1115	-401	1115	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGCCATCCAGAGAACT	NA	False	NA	NA	False	NA	NA	NA	147605725	147603809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147603800_147605700
ES_00041573	chr4	-	2565	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	177.791134480885	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726928	147696393	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147698506_147699736_147699877_147702873_147702956_147725368_147725463_147726791
ES_00041574	chr4	-	613	4	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	4065	-2302	at_least_one_novel_splicesite	FALSE	canonical	3	115	junction_2	63.3456128446688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTTTGTTTTCTACCA	NA	False	NA	NA	False	AATACA	-17	NA	147782945	147760260	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147760511_147762673_147762801_147766723_147766828_147782813
ES_00041578	chr4	-	1026	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-10	-1770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	108.849621037466	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTCAATCAAGGAATCCAC	9513	False	NA	NA	False	AATACA	-40	NA	147894255	147840425	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147860154_147860286_147891546_147891641_147893953
ES_00041579	chr4	-	766	5	NIC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-52	-1770	combination_of_known_splicesites	FALSE	canonical	3	29	junction_3	82.2313808712951	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTCAATCAAGGAATCCAC	9471	False	NA	NA	False	AATACA	-40	NA	147894297	147840425	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_147840693_147842158_147842286_147845677_147845783_147891546_147891641_147894124
ES_00041581	chr4	-	1884	12	FSM	ENSMUSG00000029022.19	ENSMUST00000119975.3	1879	12	0	-5	0	0	multi-exon	FALSE	canonical	1	2	junction_10	115.583464172357	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCATGTAAGCCTCTC	NA	False	NA	-7	True	AATAAA	-21	NA	147952940	147945242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952525_147952641_147952825
ES_00041582	chr4	-	1904	15	FSM	ENSMUSG00000029020.14	ENSMUST00000105714.8	2427	15	0	523	0	-523	multi-exon	FALSE	canonical	3	61	junction_6	8.89421963171266	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGAAGCTCCTTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	147989155	147966473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
ES_00041583	chr4	-	685	6	FSM	ENSMUSG00000029020.14	ENSMUST00000134172.8	685	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	32.7939018721469	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCCTGCCCTTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	147987852	147971790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_147971832_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811
ES_00041584	chr4	-	2958	17	ISM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	4728	303	4669	-303	3prime_fragment	FALSE	canonical	3	68	junction_3	13.0144150848204	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGATGCCTGGGGTGGG	NA	False	NA	1	True	ATTAAA	-20	NA	148016496	147994512	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083
ES_00041585	chr4	-	811	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCAGTTCTGGAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	148236382	148230574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ES_00041586	chr4	-	2037	2	FSM	ENSMUSG00000041459.16	ENSMUST00000147391.3	1011	2	0	-1026	0	0	multi-exon	FALSE	canonical	3	409	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTAAATGAGGTTTTAGA	NA	False	NA	-39	True	NA	NA	NA	148702824	148700066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148701302_148702022
ES_00041587	chr4	-	741	6	FSM	ENSMUSG00000041459.16	ENSMUST00000190552.7	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	398.328206382626	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGATTCATCACCTGTC	NA	False	NA	-2	True	AATAAA	-26	NA	148706447	148701172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405
ES_00041588	chr4	-	1190	8	NIC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	371.00008251278	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATGGATTCATCACCT	NA	False	NA	-5	True	AATAAA	-23	NA	148711215	148701175	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00041590	chr4	-	235	2	FSM	ENSMUSG00000086766.2	ENSMUST00000151967.2	236	2	0	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGACCGCTAAGAGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	148998781	148997968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148998076_148998653
ES_00041591	chr4	-	1490	11	Fusion	ENSMUSG00000028975.17_ENSMUSG00000086606.2	novel	2006	9	NA	NA	-2	7	multi-exon	FALSE	canonical	3	45	junction_1	151.923796687682	85	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTTGTGGACAAAACCCTC	NA	False	NA	3	True	AATAAA	-21	NA	149184268	149031941	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_-_149032363_149033223_149033365_149046004_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
ES_00041592	chr4	-	825	6	NNC	ENSMUSG00000073705.11	novel	1110	5	NA	NA	0	26429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	160.911901362205	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGAGAGAGAGCGAGCT	NA	False	NA	NA	False	NA	NA	NA	149222005	149185148	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_149185179_149212888_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ES_00041593	chr4	-	3593	8	Fusion	ENSMUSG00000028971.5_ENSMUSG00000073705.11	novel	1110	5	NA	NA	0	0	multi-exon	TRUE	canonical	0	0	junction_3	192.016899766449	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGGGCTTCCGTCCCCT	NA	False	NA	NA	False	AATAAA	-32	NA	149222005	149209490	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_-_149209931_149210312_149211603_149211738_149212784_149212865_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ES_00041594	chr4	-	2651	4	Fusion	ENSMUSG00000028971.5_ENSMUSG00000073705.11	novel	412	5	NA	NA	1	0	intron_retention	FALSE	canonical	3	10	junction_1	189.121360213195	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGGGCTTCCGTCCCCT	NA	False	NA	NA	False	AATAAA	-32	NA	149222021	149209490	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_-_149211895_149216095_149216130_149216715_149216840_149221932
ES_00041596	chr4	-	798	6	FSM	ENSMUSG00000028961.16	ENSMUST00000156120.8	828	6	30	0	30	0	multi-exon	FALSE	canonical	3	293	junction_1	17.3597235001022	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTTCATGTCCTTGTA	NA	False	NA	NA	False	NA	NA	NA	149251198	149244383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ES_00041597	chr4	-	338	1	Intergenic	novelGene_3049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTGAATCTAGAGCTCA	NA	False	NA	NA	False	NA	NA	NA	149595224	149594886	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_149594900_149595200
ES_00041598	chr4	-	4690	22	ISM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	35321	-732	0	83	3prime_fragment	TRUE	canonical	3	10	junction_11	3.94577761635554	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCCTTAGTACCATAAA	1717	False	NA	83	True	NA	NA	NA	149747741	149733541	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600
ES_00041600	chr4	-	3682	12	NNC	ENSMUSG00000044700.16	novel	3697	11	NA	NA	0	9027	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.424493454955	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGTCTCACCATGTAGCT	NA	False	NA	NA	False	NA	NA	NA	149822455	149790804	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_149790844_149799839_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ES_00041601	chr4	-	4639	10	FSM	ENSMUSG00000044700.16	ENSMUST00000054459.11	4631	10	0	-8	0	0	multi-exon	FALSE	canonical	3	194	junction_2	68.5966921421107	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTTTTCTTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	149822501	149799831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ES_00041606	chr4	-	844	8	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	0	9548	intron_retention	FALSE	non_canonical	0	0	junction_1	2010.05896958883	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAAGCCAGGTAGTGGTG	NA	False	NA	NA	False	NA	NA	NA	150994285	150972041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_150972078_150981591_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ES_00041607	chr4	-	883	8	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	0	9548	intron_retention	FALSE	non_canonical	0	0	junction_1	2010.05896958883	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAAGCCAGGTAGTGGTG	NA	False	NA	NA	False	NA	NA	NA	150994325	150972041	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_150972077_150981591_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ES_00041609	chr4	-	478	4	FSM	ENSMUSG00000028964.15	ENSMUST00000134751.8	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	5627	junction_3	104.487107125978	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGCAGTGAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	150994325	150989582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_150989767_150991496_150991599_150992774_150992881_150994239
ES_00041624	chr4	-	699	4	FSM	ENSMUSG00000029027.10	ENSMUST00000142671.2	699	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	10.9848380355227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGAGGAGGAGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	154059514	154056943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154057136_154057236_154057426_154059025_154059153_154059323
ES_00041626	chr4	-	3150	2	FSM	ENSMUSG00000029030.15	ENSMUST00000133165.2	947	2	-120	-2083	-60	1	multi-exon	FALSE	canonical	3	746	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGCTCCTTTTTGAAG	NA	False	NA	-2	True	AGTAAA	-17	NA	154245183	154241940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_154244719_154244811
ES_00041628	chr4	-	790	4	FSM	ENSMUSG00000029053.17	ENSMUST00000140256.2	790	4	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_3	21.853044537445	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGAATAAAGTGTACCG	8602	False	NA	-36	True	NA	NA	NA	155352792	155346556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640
ES_00041632	chr4	-	3896	20	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	0	334	combination_of_known_junctions	FALSE	canonical	3	51	junction_19	79.1919019895357	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGAGAGGGTCCTGGCT	7421	False	NA	NA	False	NA	NA	NA	155753654	155738799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030_155753188_155753271
ES_00041633	chr4	-	3851	19	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	4	0	intron_retention	FALSE	canonical	3	72	junction_12	68.9403033943046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7429	False	NA	-6	True	TATAAA	-12	NA	155753646	155739139	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ES_00041634	chr4	-	3749	18	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	0	-3	intron_retention	FALSE	canonical	3	118	junction_11	55.658561179085	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTTTGCTTCCTGTTCC	7420	False	NA	-9	True	TATAAA	-9	NA	155753655	155739142	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ES_00041645	chr4	+	2116	1	Intergenic	novelGene_2682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACCACAATTTTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	4238832	4240948	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_4238800_4240900
ES_00041646	chr4	+	1684	1	Intergenic	novelGene_2687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGACGGGGATACCGCT	NA	False	NA	NA	False	NA	NA	NA	8121587	8123271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_8121600_8123300
ES_00041647	chr4	+	263	1	Intergenic	novelGene_2691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTTCCCTGTTCCAGC	NA	False	NA	NA	False	NA	NA	NA	10431119	10431382	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_10431100_10431400
ES_00041648	chr4	+	207	1	Intergenic	novelGene_2692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCCTTCTCCCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	10433459	10433666	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_10433500_10433700
ES_00041649	chr4	+	380	1	Intergenic	novelGene_2703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTTTCCAAGTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	11373181	11373561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11373200_11373600
ES_00041650	chr4	+	222	1	Intergenic	novelGene_2705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCTCAATTTTAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	11484584	11484806	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11484600_11484800
ES_00041651	chr4	+	204	1	Intergenic	novelGene_2710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTATATATAAATGCCT	NA	False	NA	NA	False	NA	NA	NA	14827326	14827530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_14827300_14827500
ES_00041652	chr4	+	241	1	Intergenic	novelGene_2713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTTAAAATTTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	19149649	19149890	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_19149600_19149900
ES_00041653	chr4	+	1833	1	Intergenic	novelGene_2716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATCAGAGTAACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	19154975	19156808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_19155000_19156800
ES_00041654	chr4	+	364	1	Intergenic	novelGene_2720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAATAAATAAAAAAAA	3561	False	NA	NA	False	NA	NA	NA	21770739	21771103	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_21770700_21771100
ES_00041655	chr4	+	772	1	Intergenic	novelGene_2723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCGAGTTTTAATTTTAG	NA	False	NA	NA	False	AAGAAA	-23	NA	24645434	24646206	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_24645400_24646200
ES_00041656	chr4	+	203	1	Intergenic	novelGene_2726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGTTTTATGATTA	NA	False	NA	NA	False	NA	NA	NA	28657408	28657611	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_28657400_28657600
ES_00041657	chr4	+	295	1	Intergenic	novelGene_2734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGGTAGGAAAGGCCATT	NA	False	NA	NA	False	NA	NA	NA	34940490	34940785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_34940500_34940800
ES_00041658	chr4	+	213	1	Intergenic	novelGene_2738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAAAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	36650895	36651108	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_36650900_36651100
ES_00041659	chr4	+	266	1	Intergenic	novelGene_2743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGATTCCTTTTATAACA	NA	False	NA	NA	False	NA	NA	NA	40232094	40232360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40232100_40232400
ES_00041660	chr4	+	219	1	Intergenic	novelGene_2744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGGCAACTTTTAAACCA	NA	False	NA	NA	False	NA	NA	NA	40253482	40253701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40253500_40253700
ES_00041661	chr4	+	455	1	Intergenic	novelGene_2747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAGCATTTTAAAACAC	9088	False	NA	NA	False	NA	NA	NA	40605414	40605869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40605400_40605900
ES_00041662	chr4	+	213	1	Intergenic	novelGene_2752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGTGATTTCTGCGAG	NA	False	NA	NA	False	NA	NA	NA	41125124	41125337	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41125100_41125300
ES_00041663	chr4	+	208	1	Intergenic	novelGene_2753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTGTCTTAAAACAAGG	4077	False	NA	NA	False	NA	NA	NA	41142493	41142701	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41142500_41142700
ES_00041664	chr4	+	294	1	Intergenic	novelGene_2754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAACCAAAATATGATAC	NA	False	NA	NA	False	NA	NA	NA	41871601	41871895	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41871600_41871900
ES_00041665	chr4	+	254	1	Intergenic	novelGene_2756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGGTCCCTTAATGGTT	NA	False	NA	NA	False	NA	NA	NA	41877926	41878180	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41877900_41878200
ES_00041666	chr4	+	208	1	Intergenic	novelGene_2757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGATTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	41878395	41878603	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41878400_41878600
ES_00041667	chr4	+	219	1	Intergenic	novelGene_2759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAGCCTGGCGATAGAT	NA	False	NA	NA	False	NA	NA	NA	41879837	41880056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41879800_41880100
ES_00041668	chr4	+	1479	1	Intergenic	novelGene_2764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTGGCTGAAAAACCAGC	NA	False	NA	NA	False	NA	NA	NA	46240842	46242321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_46240800_46242300
ES_00041669	chr4	+	227	1	Intergenic	novelGene_2775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTCATTTTTAAATACA	NA	False	NA	NA	False	NA	NA	NA	52937042	52937269	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_52937000_52937300
ES_00041670	chr4	+	233	1	Intergenic	novelGene_2781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGCTACAAAACCAGTT	NA	False	NA	NA	False	NA	NA	NA	55200595	55200828	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_55200600_55200800
ES_00041671	chr4	+	205	1	Intergenic	novelGene_2782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATCAGAGAGGTCACCAG	NA	False	NA	NA	False	NA	NA	NA	55306255	55306460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_55306300_55306500
ES_00041673	chr4	+	238	1	Intergenic	novelGene_2786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTAGGGCCATGC	223	False	NA	NA	False	NA	NA	NA	59197785	59198023	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_59197800_59198000
ES_00041674	chr4	+	219	1	Intergenic	novelGene_2790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTACTGGCTCTTGAGTGC	8456	False	NA	NA	False	NA	NA	NA	62397189	62397408	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_62397200_62397400
ES_00041675	chr4	+	376	1	Intergenic	novelGene_2797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGCAGAACCGGTTCAGA	NA	False	NA	NA	False	AATACA	-11	NA	70166179	70166555	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_70166200_70166600
ES_00041676	chr4	+	203	1	Intergenic	novelGene_2798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCCCCAAGGGGAATTG	NA	False	NA	NA	False	NA	NA	NA	71444291	71444494	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_71444300_71444500
ES_00041677	chr4	+	344	1	Intergenic	novelGene_2800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCAGCTCGCAACGTG	NA	False	NA	NA	False	NA	NA	NA	73110814	73111158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_73110800_73111200
ES_00041678	chr4	+	217	1	Intergenic	novelGene_2804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGAACTCCTTCTCCCTG	NA	False	NA	NA	False	NA	NA	NA	77497538	77497755	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_77497500_77497800
ES_00041679	chr4	+	207	1	Intergenic	novelGene_2810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	555	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAGGTTTAGTAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	84510385	84510592	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_84510400_84510600
ES_00041680	chr4	+	204	1	Intergenic	novelGene_2813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAATAAAAAAAAAAAT	2903	False	NA	NA	False	NA	NA	NA	89185195	89185399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_89185200_89185400
ES_00041681	chr4	+	313	1	Intergenic	novelGene_2814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTTTTGATAAAAGGTAT	NA	False	NA	NA	False	NA	NA	NA	92696017	92696330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_92696000_92696300
ES_00041682	chr4	+	213	1	Intergenic	novelGene_2817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCACCAGCCCTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	94655849	94656062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_94655800_94656100
ES_00041683	chr4	+	232	1	Intergenic	novelGene_2818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAATCCAGGTCCCATT	NA	False	NA	NA	False	NA	NA	NA	97411366	97411598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_97411400_97411600
ES_00041684	chr4	+	373	1	Intergenic	novelGene_2820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGGAAGGTTTTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	98826415	98826788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_98826400_98826800
ES_00041687	chr4	+	207	1	Intergenic	novelGene_2830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTGAGCGAGCGTGTG	NA	False	NA	NA	False	NA	NA	NA	104664149	104664356	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_104664100_104664400
ES_00041688	chr4	+	203	1	Intergenic	novelGene_2831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTTCTTAATCCAATTA	NA	False	NA	NA	False	NA	NA	NA	106186470	106186673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_106186500_106186700
ES_00041689	chr4	+	365	1	Intergenic	novelGene_2833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAACATCTTTCAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	107222081	107222446	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_107222100_107222400
ES_00041691	chr4	+	253	1	Intergenic	novelGene_2847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCATCCATCAAATGCCT	NA	False	NA	NA	False	AATAAA	-26	NA	110511242	110511495	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_110511200_110511500
ES_00041692	chr4	+	211	1	Intergenic	novelGene_2848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCTTTTAATATTAAATAG	NA	False	NA	NA	False	NA	NA	NA	111383390	111383601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_111383400_111383600
ES_00041693	chr4	+	294	1	Intergenic	novelGene_2854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	116052894	116053188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116052900_116053200
ES_00041694	chr4	+	202	1	Intergenic	novelGene_2857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTTTTTTAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	116528827	116529029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116528800_116529000
ES_00041695	chr4	+	212	1	Intergenic	novelGene_2858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAGCCAGTGGGTAGAAG	1614	False	NA	NA	False	AATATA	-5	NA	116722686	116722898	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116722700_116722900
ES_00041697	chr4	+	301	1	Intergenic	novelGene_2882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACTATG	NA	False	NA	NA	False	NA	NA	NA	123152124	123152425	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123152100_123152400
ES_00041698	chr4	+	214	1	Intergenic	novelGene_2886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	690	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCATTAGAGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	123434506	123434720	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123434500_123434700
ES_00041699	chr4	+	391	1	Intergenic	novelGene_2898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAACACGTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	125502439	125502830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_125502400_125502800
ES_00041700	chr4	+	299	1	Intergenic	novelGene_2903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACCCTGTTTTGAAA	1833	False	NA	NA	False	NA	NA	NA	126118989	126119288	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126119000_126119300
ES_00041702	chr4	+	2876	1	Intergenic	novelGene_2913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTGTTTTAGAAGATT	NA	False	NA	NA	False	NA	NA	NA	126932392	126935268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126932400_126935300
ES_00041704	chr4	+	223	1	Intergenic	novelGene_2920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATAAGGAAAATATTAAAT	NA	False	NA	NA	False	NA	NA	NA	128931480	128931703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_128931500_128931700
ES_00041705	chr4	+	203	1	Intergenic	novelGene_2922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTTTAAGATGTATTT	2261	False	NA	NA	False	NA	NA	NA	128995574	128995777	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_128995600_128995800
ES_00041706	chr4	+	333	1	Intergenic	novelGene_2926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTGGACAACTTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	129280946	129281279	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129280900_129281300
ES_00041707	chr4	+	254	1	Intergenic	novelGene_2932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCAATGTTCTTAAGCT	NA	False	NA	NA	False	NA	NA	NA	129699717	129699971	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129699700_129700000
ES_00041708	chr4	+	275	1	Intergenic	novelGene_2936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCCGGAGTCTGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	130041468	130041743	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_130041500_130041700
ES_00041709	chr4	+	337	1	Intergenic	novelGene_2941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAGTTTCTAAGAGCCC	2481	False	NA	NA	False	NA	NA	NA	130369342	130369679	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_130369300_130369700
ES_00041710	chr4	+	204	1	Intergenic	novelGene_2942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTTTTTAGTGCTCACT	NA	False	NA	NA	False	NA	NA	NA	130410604	130410808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_130410600_130410800
ES_00041711	chr4	+	216	1	Intergenic	novelGene_2947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	131866425	131866641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_131866400_131866600
ES_00041712	chr4	+	304	1	Intergenic	novelGene_2949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	132031017	132031321	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_132031000_132031300
ES_00041713	chr4	+	241	1	Intergenic	novelGene_2954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGCATTCAGGAGGCAG	92	False	NA	NA	False	NA	NA	NA	132530838	132531079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_132530800_132531100
ES_00041714	chr4	+	206	1	Intergenic	novelGene_2956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAGATTGCTAAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	132726477	132726683	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_132726500_132726700
ES_00041715	chr4	+	215	1	Intergenic	novelGene_2967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	798	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCTTTCACACAGCTGT	NA	False	NA	NA	False	NA	NA	NA	134446384	134446599	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_134446400_134446600
ES_00041717	chr4	+	1559	1	Intergenic	novelGene_2971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGTATACTGTAATTAAG	NA	False	NA	NA	False	NA	NA	NA	137108797	137110356	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137108800_137110400
ES_00041718	chr4	+	553	1	Intergenic	novelGene_2973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAATGTTTTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	137111054	137111607	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137111100_137111600
ES_00041720	chr4	+	200	1	Intergenic	novelGene_2977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGGATTTCTGAGTT	346	False	NA	NA	False	NA	NA	NA	137724806	137725006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137724800_137725000
ES_00041721	chr4	+	219	1	Intergenic	novelGene_2979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGCAAGGATTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	137741291	137741510	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137741300_137741500
ES_00041722	chr4	+	277	1	Intergenic	novelGene_2987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGGTAAGAGTCTATCA	-2	True	NA	NA	False	NA	NA	NA	140131856	140132133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_140131900_140132100
ES_00041723	chr4	+	320	1	Intergenic	novelGene_2991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGTGGAGGACCATGAG	787	False	NA	NA	False	AAAACA	-5	NA	141283713	141284033	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_141283700_141284000
ES_00041724	chr4	+	212	1	Intergenic	novelGene_3000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTCACGTTTACGAGT	1565	False	NA	NA	False	NA	NA	NA	145002004	145002216	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_145002000_145002200
ES_00041725	chr4	+	5723	1	Intergenic	novelGene_3002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCAAAAGGCTCTGAAGT	1618	False	NA	NA	False	TATAAA	-21	NA	145269666	145275389	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_145269700_145275400
ES_00041726	chr4	+	262	1	Intergenic	novelGene_3005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATTCCTTACTACACTA	NA	False	NA	NA	False	NA	NA	NA	145319065	145319327	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_145319100_145319300
ES_00041727	chr4	+	207	1	Intergenic	novelGene_3036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATTTGTTAATTCTTG	NA	False	NA	NA	False	NA	NA	NA	147227355	147227562	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_147227400_147227600
ES_00041728	chr4	+	204	1	Intergenic	novelGene_3041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTCTTAACCCTCAACT	NA	False	NA	NA	False	NA	NA	NA	148252637	148252841	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_148252600_148252800
ES_00041729	chr4	+	1650	1	Intergenic	novelGene_3042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCTGTCAATGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	148681136	148682786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_148681100_148682800
ES_00041730	chr4	+	291	1	Intergenic	novelGene_3045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCCAGCTCTTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	149254216	149254507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_149254200_149254500
ES_00041731	chr4	+	2709	1	Intergenic	novelGene_3046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACATGGTGTCTGATTGCA	NA	False	NA	18	True	AATAAA	-19	NA	149581625	149584334	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_149581600_149584300
ES_00041732	chr4	+	609	1	Intergenic	novelGene_3050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTCTTTAATTTACTTT	NA	False	NA	NA	False	NA	NA	NA	150160945	150161554	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_150160900_150161600
ES_00041733	chr4	+	206	1	Intergenic	novelGene_3051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTTCCAGGTAGGGAC	494	False	NA	NA	False	AAAAAG	-6	NA	150241416	150241622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_150241400_150241600
ES_00041734	chr4	+	203	1	Intergenic	novelGene_3053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTGTATGGATGTTG	804	False	NA	NA	False	NA	NA	NA	150946138	150946341	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_150946100_150946300
ES_00041739	chr4	+	381	4	FSM	ENSMUSG00000042198.13	ENSMUST00000121110.8	381	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.984244821993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	NA	False	NA	30	True	ATTAAA	-23	NA	3938887	3943528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_3938963_3941245_3941312_3942720_3942820_3943387
ES_00041741	chr4	+	3352	8	ISM	ENSMUSG00000041235.13	ENSMUST00000051558.10	10216	38	164017	4	151	-4	3prime_fragment	FALSE	canonical	3	11	junction_1	25.3626754527682	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGTTATAGAATGCAGT	1180	False	NA	12	True	AATAAA	-22	NA	8855381	8867655	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_8855515_8856670_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ES_00041742	chr4	+	1105	2	FSM	ENSMUSG00000041216.16	ENSMUST00000147285.2	1327	2	215	7	161	-5	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGCAATCTGTTCTCTT	157	False	NA	NA	False	AATAAA	-19	NA	9269507	9282265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_9269735_9281387
ES_00041743	chr4	+	203	2	Intergenic	novelGene_2697	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTTGTAGAAGTTC	NA	False	NA	NA	False	NA	NA	NA	11067382	11146365	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_11067409_11146188
ES_00041744	chr4	+	561	1	FSM	ENSMUSG00000081490.2	ENSMUST00000120175.2	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGGGAGAGGAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	11144709	11145270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_11144700_11145300
ES_00041746	chr4	+	2551	5	NNC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	91.7261549395809	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	NA	False	NA	NA	False	AATAAA	-9	NA	11558873	11585744	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11583676
ES_00041747	chr4	+	2703	7	ISM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	44691	0	-5712	0	3prime_fragment	FALSE	canonical	3	142	junction_4	76.7962672703997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11603662	11615805	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
ES_00041748	chr4	+	849	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-46	-250	multi-exon	FALSE	canonical	3	4269	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGGGTGGTGGATATG	2	True	NA	NA	False	NA	NA	NA	12232786	12233701	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_12232839_12232904
ES_00041749	chr4	+	766	5	NIC	ENSMUSG00000086587.8	novel	876	6	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	17.4928556845359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATATATGGTACAGAATT	0	True	NA	3	True	TATAAA	-14	NA	14930660	14953027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14952620
ES_00041750	chr4	+	2550	5	NNC	ENSMUSG00000073988.14	novel	2862	5	NA	NA	-126	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	29.3385412043612	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTGTTTATATTTTTC	241	False	NA	21	True	AATAAA	-17	NA	20008230	20030470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_20008259_20014630_20014785_20021191_20021386_20023784_20023896_20028407
ES_00041751	chr4	+	243	2	Intergenic	novelGene_2718	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTTACTCTTACAGAAG	NA	False	NA	NA	False	NA	NA	NA	21689314	21753266	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_21689355_21753063
ES_00041752	chr4	+	448	4	FSM	ENSMUSG00000028252.21	ENSMUST00000145288.8	445	4	-3	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	33.95094500403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTATCACTGTCTGGT	-5	True	NA	NA	False	TATAAA	-19	NA	21727754	21732583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488
ES_00041753	chr4	+	6078	18	NNC	ENSMUSG00000040455.18	novel	6003	18	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_13	9.29113876312107	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTAGTTCCCTGGCTTG	-14	True	NA	3	True	AATAAA	-16	NA	21776265	21837870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_21776387_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
ES_00041755	chr4	+	4261	23	FSM	ENSMUSG00000045751.17	ENSMUST00000050446.13	4261	23	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_10	89.3642490499666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCTCTCTGTGAATA	77	False	NA	NA	False	ATTAAA	-19	NA	24496543	24602946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
ES_00041757	chr4	+	219	2	Antisense	novelGene_ENSMUSG00000082138.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAGCATTTCTAAGAG	NA	False	NA	NA	False	NA	NA	NA	26578509	26611226	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_26578533_26611030
ES_00041758	chr4	+	9634	48	NNC	ENSMUSG00000058006.13	novel	17970	102	NA	NA	3961	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_31	42.9452787504444	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGGTTTACTTTGGTTTG	6814	False	NA	20	True	ATTAAA	-23	NA	32729860	32775207	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_32730072_32730279_32730491_32730755_32730985_32731208_32731330_32731914_32732086_32732745_32732961_32733336_32733725_32734341_32734452_32735192_32735896_32738608_32738771_32738902_32739177_32739743_32739980_32740378_32740475_32741005_32741101_32741322_32741445_32741775_32741923_32742455_32742566_32743105_32743180_32743641_32743841_32744541_32744705_32745581_32745729_32746440_32746568_32747843_32747950_32748574_32748691_32749552_32750036_32750249_32750477_32750912_32751069_32751211_32751394_32752030_32752193_32754429_32754568_32756376_32756516_32757739_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ES_00041759	chr4	+	3629	7	NIC	ENSMUSG00000028277.14	novel	3530	8	NA	NA	-219	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	28.5214344348636	767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTACTGGTGTTACTA	NA	False	NA	28	True	AATAAA	-38	NA	33031196	33052363	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33049681
ES_00041760	chr4	+	204	2	Intergenic	novelGene_2731	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	296	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCATATCAGTAAAACC	NA	False	NA	NA	False	NA	NA	NA	34876192	34926163	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_34876247_34926013
ES_00041761	chr4	+	219	2	Antisense	novelGene_ENSMUSG00000040296.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCAAAACACTGCTTAGT	NA	False	NA	NA	False	NA	NA	NA	40214110	40214395	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_40214299_40214364
ES_00041762	chr4	+	210	2	Antisense	novelGene_ENSMUSG00000071014.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTCAACAACACAGACACAG	NA	False	NA	NA	False	NA	NA	NA	40224514	40271896	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_40224568_40271739
ES_00041763	chr4	+	200	1	Intergenic	novelGene_2750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAGATTAATTTTC	NA	False	NA	NA	False	NA	NA	NA	40909689	40909889	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_40909700_40909900
ES_00041765	chr4	+	324	3	FSM	ENSMUSG00000073889.11	ENSMUST00000140894.8	325	3	1	0	1	0	multi-exon	FALSE	canonical	3	6	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAATAGAAAGTGCTGC	7	True	NA	NA	False	NA	NA	NA	41760512	41764009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41760552_41763581_41763682_41763824
ES_00041766	chr4	+	700	4	FSM	ENSMUSG00000073889.11	ENSMUST00000155538.8	848	4	147	1	12	-1	multi-exon	FALSE	canonical	2	10	junction_3	0.816496580927726	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTCGTCTAATGTTGC	5581	False	NA	3	True	AATAAA	-19	NA	41767945	41769473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_41768072_41768168_41768266_41768492_41768576_41769079
ES_00041767	chr4	+	551	4	FSM	ENSMUSG00000096974.3	ENSMUST00000211208.2	551	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.05480466765633	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCAGGTGTCCTGCTCTGT	13	True	NA	NA	False	NA	NA	NA	43046041	43053254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43046244_43051236_43051378_43052944_43053052_43053153
ES_00041768	chr4	+	5382	11	ISM	ENSMUSG00000035969.16	ENSMUST00000035645.12	5300	12	0	0	0	0	intron_retention	FALSE	canonical	3	32	junction_5	4.72863616701476	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	NA	False	NA	17	True	AATAAA	-19	NA	43381978	43427088	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_43382200_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227
ES_00041769	chr4	+	1151	1	FSM	ENSMUSG00000070999.3	ENSMUST00000095107.3	1941	1	65	725	65	-725	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGGTGACCTGCGGGGG	38	False	NA	NA	False	NA	NA	NA	43983547	43984698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_43983500_43984700
ES_00041770	chr4	+	1849	1	FSM	ENSMUSG00000084274.3	ENSMUST00000120860.2	2231	1	470	-88	470	88	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTAACAACAACAACAAAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	44122362	44124211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44122400_44124200
ES_00041771	chr4	+	2622	10	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	47.9026791178392	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	4	True	NA	NA	False	AATAAA	-14	NA	44756581	44932203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44916179_44916313_44925974_44926071_44929117_44929236_44931035
ES_00041772	chr4	+	696	1	FSM	ENSMUSG00002076239.1	ENSMUST00020182083.1	125	1	38	-609	38	609	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCTTGCCCTTTACCCA	NA	False	NA	NA	False	NA	NA	NA	44865344	44866040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_44865300_44866000
ES_00041774	chr4	+	1740	8	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	0	8611	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2096.77240791943	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTAGCATTAGGAAATGGC	4	True	NA	NA	False	NA	NA	NA	46450901	46481268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086_46472653_46481239
ES_00041775	chr4	+	580	1	FSM	ENSMUSG00000081152.2	ENSMUST00000121539.2	1322	1	447	295	447	-295	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCGAGGTGCCTTCTTC	NA	False	NA	NA	False	AATACA	-19	NA	47454078	47454658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_47454100_47454700
ES_00041777	chr4	+	2050	2	FSM	ENSMUSG00000028348.8	ENSMUST00000030033.5	2054	2	0	4	0	-4	multi-exon	TRUE	canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCTTGCATGGGTGCC	0	True	NA	NA	False	AATAAA	-11	NA	48663513	48673498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_48664030_48671964
ES_00041778	chr4	+	3638	1	Intergenic	novelGene_2773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTGTGTTCTATTCG	NA	False	NA	NA	False	NA	NA	NA	51876145	51879783	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_51876100_51879800
ES_00041779	chr4	+	441	4	Intergenic	novelGene_2777	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	6	junction_3	22.6421435969889	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGACAGACTGAGCTATT	332	False	NA	8	True	AATAAA	-20	NA	53340454	53356057	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_53340568_53340695_53340778_53342594_53342685_53355901
ES_00041780	chr4	+	365	2	Intergenic	novelGene_2778	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCAGATGATGATGATAA	12	False	NA	99	True	NA	NA	NA	53341431	53342853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_53341538_53342594
ES_00041781	chr4	+	1291	1	FSM	ENSMUSG00000081516.2	ENSMUST00000117239.2	1049	1	316	-558	316	558	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTGAGTATTTGTTG	NA	False	NA	NA	False	AATAAA	-30	NA	53662611	53663902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_53662600_53663900
ES_00041782	chr4	+	6934	8	NNC	ENSMUSG00000054752.17	novel	7467	13	NA	NA	25310	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_7	4.94871659305393	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGTCCATTTTTTATT	NA	False	NA	8	True	ATTAAA	-17	NA	53668589	53707009	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_53668674_53679793_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
ES_00041784	chr4	+	480	1	FSM	ENSMUSG00000081504.4	ENSMUST00000121282.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGCTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	55254739	55255219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_55254700_55255200
ES_00041785	chr4	+	207	2	Antisense	novelGene_ENSMUSG00000084404.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGAGAATTTTTGCATA	NA	False	NA	NA	False	NA	NA	NA	55404549	55445282	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_55404583_55445108
ES_00041786	chr4	+	1771	2	FSM	ENSMUSG00000038827.12	ENSMUST00000152638.2	1775	2	-6	10	-6	-10	multi-exon	FALSE	canonical	3	125	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAACCCACAAAAAATA	-10	True	NA	NA	False	NA	NA	NA	56802338	56804615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_56803648_56804153
ES_00041788	chr4	+	6728	3	NIC	ENSMUSG00000038729.25	novel	7172	3	NA	NA	-11	-16	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAACGTGTATAGTGTTTT	-1	True	NA	11	True	ATTAAA	-2	NA	57782168	57896966	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_57782323_57854561_57857038_57892868
ES_00041790	chr4	+	7172	3	FSM	ENSMUSG00000038729.25	ENSMUST00000098064.9	7172	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	1.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTTTTTTTCT	5000	False	NA	27	True	ATTAAA	-18	NA	57854158	57896982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_57857038_57883023_57883203_57892868
ES_00041791	chr4	+	3733	10	NNC	ENSMUSG00000028381.9	novel	4012	9	NA	NA	0	39735	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	82.8462803802289	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAGGAAA	60	False	NA	NA	False	NA	NA	NA	59189557	59262568	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222_59222829_59262541
ES_00041792	chr4	+	2296	8	ISM	ENSMUSG00000028385.15	ENSMUST00000030080.7	7314	9	20	9228	-20	955	5prime_fragment	FALSE	canonical	3	98	junction_2	9.81876587282262	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGACCTCAGAGTTAGCAT	-12	True	NA	NA	False	TTTAAA	-10	NA	59805859	59895509	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_59806226_59857444_59857637_59868237_59868349_59879221_59879381_59884979_59885176_59886406_59886607_59892461_59892549_59894524
ES_00041793	chr4	+	1196	2	FSM	ENSMUSG00000045672.16	ENSMUST00000151992.2	1485	2	289	0	289	0	multi-exon	FALSE	canonical	2	4	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	63249518	63252375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_63249738_63251398
ES_00041794	chr4	+	481	2	Intergenic	novelGene_2794	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGGGGGAGCCCTCACAT	NA	False	NA	NA	False	NA	NA	NA	66820319	66825889	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_66820528_66825616
ES_00041795	chr4	+	5149	2	Intergenic	novelGene_2795	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATAGTGACATTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	66820319	66827435	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_66825452_66827418
ES_00041796	chr4	+	880	2	Genic_Genomic	ENSMUSG00000083496.2	novel	749	1	NA	NA	-42	3469	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGGCTAAGCTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	79245902	79250162	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_79246752_79250131
ES_00041797	chr4	+	1192	1	FSM	ENSMUSG00000083139.2	ENSMUST00000118116.2	942	1	-53	-197	-53	197	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGTGTATGTATGTGTA	NA	False	NA	NA	False	NA	NA	NA	84834079	84835271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_84834100_84835300
ES_00041798	chr4	+	2590	11	NNC	ENSMUSG00000028488.16	novel	2822	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	107.706824296328	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123771	85307617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790_85306588_85306687_85306745_85306782
ES_00041799	chr4	+	2690	10	NNC	ENSMUSG00000028488.16	novel	2822	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	85.3117738968784	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123771	85307617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790_85306745_85306782
ES_00041800	chr4	+	6155	16	FSM	ENSMUSG00000066113.17	ENSMUST00000107177.2	6278	16	123	0	123	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29957257930786	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATAGTGTCGGTGTCT	NA	False	NA	NA	False	AATACA	-13	NA	86195125	86346619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_86195410_86207955_86208086_86240195_86240407_86255074_86255255_86259301_86259456_86260266_86261393_86274571_86274700_86293088_86293218_86303700_86303905_86306650_86306786_86331823_86332037_86333707_86333889_86336708_86336917_86341593_86341704_86342396_86342618_86344078
ES_00041801	chr4	+	210	2	FSM	ENSMUSG00000038368.17	ENSMUST00000129967.2	590	2	-24	404	-24	-404	multi-exon	FALSE	canonical	3	135	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATAAATTGAACTTTGT	NA	False	NA	NA	False	NA	NA	NA	88012841	88039645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_88012913_88039506
ES_00041802	chr4	+	5560	43	NIC	ENSMUSG00000038368.17	novel	5791	44	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_34	31.831445611301	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACTTTTATTTTTAAGT	NA	False	NA	15	True	AGTAAA	-24	NA	88012844	88329248	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
ES_00041803	chr4	+	1795	2	FSM	ENSMUSG00000043753.3	ENSMUST00000052478.3	4079	2	491	1793	491	1060	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCCTCTTCTGGCCACT	NA	False	NA	NA	False	AAGAAA	-7	NA	89576925	89581216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_89577177_89579672
ES_00041804	chr4	+	219	2	Antisense	novelGene_ENSMUSG00000049799.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCATGTTTCTTAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	94516622	94542066	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_94516660_94541884
ES_00041805	chr4	+	428	7	FSM	ENSMUSG00000028572.14	ENSMUST00000143326.8	428	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	66.2086348849856	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATCCAGCATCAGCAGAA	NA	False	NA	NA	False	AATAAA	-18	NA	95901529	95907864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_95901576_95903044_95903139_95903901_95903946_95904645_95904681_95905179_95905263_95905824_95905926_95907839
ES_00041806	chr4	+	2008	15	FSM	ENSMUSG00000061859.18	ENSMUST00000107030.9	2104	15	0	96	0	-96	multi-exon	FALSE	canonical	2	3	junction_14	5.57554792768187	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGGGGTTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	98284128	98342848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98342596
ES_00041807	chr4	+	3155	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	8	intron_retention	TRUE	non_canonical	3	57	junction_4	168.197057049165	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98614970	98626725	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682_98624924_98624950
ES_00041808	chr4	+	2723	11	NNC	ENSMUSG00000028550.16	novel	2792	11	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	21.4671842587704	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGACACTTTTGTTTT	NA	False	NA	7	True	NA	NA	NA	99082390	99148018	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_99082521_99100813_99100949_99104114_99104199_99106261_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
ES_00041809	chr4	+	5074	1	FSM	ENSMUSG00000067261.5	ENSMUST00000087285.5	2324	1	-2696	-54	-2696	54	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTTTAATTAGGTGTC	NA	False	NA	9	True	AATAAA	-19	NA	99541839	99546913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_99541800_99546900
ES_00041810	chr4	+	2633	10	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	60.5042596194579	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603834	99651697	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ES_00041811	chr4	+	336	2	Intergenic	novelGene_2828	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAGAAAACAATCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	100565290	100630598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_100565325_100630296
ES_00041812	chr4	+	5120	7	Fusion	ENSMUSG00000028527.19_ENSMUSG00000087361.8	novel	537	4	NA	NA	1811	0	multi-exon	FALSE	canonical	1	1	junction_1	126.354549669659	112	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101212790	101324192	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_101213086_101256086_101256820_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ES_00041813	chr4	+	4201	5	NNC	ENSMUSG00000028527.19	novel	4186	6	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	118.954823357441	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276813	101324192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_101277163_101304359_101304477_101317696_101317870_101320145_101320265_101320749
ES_00041814	chr4	+	5035	20	NNC	ENSMUSG00000028528.18	novel	1569	12	NA	NA	494	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	28.8071243881173	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTAGAAATATACATTA	NA	False	NA	6	True	ATTAAA	-14	NA	101354338	101499995	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_101354364_101389194_101389260_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ES_00041815	chr4	+	806	5	FSM	ENSMUSG00000057722.18	ENSMUST00000156402.2	889	5	0	83	0	-83	multi-exon	FALSE	canonical	2	3	junction_2	1.29903810567666	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGCCAACTGAATTA	NA	False	NA	NA	False	AATAAA	-23	NA	101628564	101640009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_101628643_101630032_101630193_101631397_101631481_101637101_101637319_101639741
ES_00041816	chr4	+	2890	3	FSM	ENSMUSG00000037028.8	ENSMUST00000075999.4	1455	3	126	-1561	126	1561	multi-exon	TRUE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGGTTCATTGTATCCT	NA	False	NA	NA	False	NA	NA	NA	101766443	101770666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_101766605_101767039_101767628_101768525
ES_00041817	chr4	+	4753	14	NIC	ENSMUSG00000028522.17	novel	4830	15	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	42.5459028127721	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTGGTGTCTAGTT	2518	False	NA	15	True	ATTAAA	-16	NA	102971592	103022949	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_102971717_102972756_102972858_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ES_00041819	chr4	+	419	4	FSM	ENSMUSG00000035069.4	ENSMUST00000133178.2	421	4	0	2	0	-2	multi-exon	FALSE	canonical	2	2	junction_3	50.9204172104755	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCAGTGTTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	103186104	103229063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_103186164_103188501_103188577_103210698_103210849_103228928
ES_00041820	chr4	+	947	6	FSM	ENSMUSG00000028519.17	ENSMUST00000143644.8	974	6	27	0	27	0	multi-exon	FALSE	canonical	1	4	junction_1	17.6340579561257	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGAGCTGAAGCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	104224336	104536693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_104224667_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649
ES_00041822	chr4	+	10557	69	NNC	ENSMUSG00000028514.16	novel	10575	68	NA	NA	66	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	51.288046051883	46	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTTCAAAAATGTA	NA	False	NA	-4	True	TATAAA	-1	NA	106173496	106298503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_106173984_106198410_106198577_106199538_106199607_106203731_106203876_106204475_106204599_106209129_106209166_106209878_106209945_106212870_106212937_106215596_106215672_106216212_106216372_106217319_106217435_106217614_106217719_106219099_106219208_106219353_106219450_106219534_106219697_106219884_106219933_106221525_106221590_106225223_106225332_106225919_106226070_106227265_106227398_106228180_106228293_106229884_106229962_106230855_106230997_106231187_106231242_106232843_106232960_106234525_106234593_106234705_106234817_106236235_106236335_106236425_106236600_106237265_106237352_106237624_106237719_106239431_106239588_106242619_106242718_106244675_106244772_106244886_106245116_106245697_106245858_106247389_106247546_106249554_106249626_106254365_106254527_106256246_106256309_106258167_106258360_106259236_106259355_106261120_106261266_106263587_106263708_106264209_106264336_106265133_106265233_106266008_106266092_106266480_106266623_106266807_106266928_106267328_106267550_106267980_106268106_106268496_106268639_106269288_106269440_106270775_106270872_106271571_106271676_106273164_106273279_106275388_106275486_106277630_106277748_106278155_106278249_106280656_106280760_106282501_106282624_106283682_106283797_106285684_106285751_106287721_106287789_106288810_106288890_106292175_106292252_106293529_106293617_106293941_106294053_106295973
ES_00041824	chr4	+	3100	2	FSM	ENSMUSG00000043572.8	ENSMUST00000146966.2	644	2	-42	-2414	-8	0	multi-exon	TRUE	canonical	2	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508257	106512477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_106508346_106509465
ES_00041825	chr4	+	6964	17	NIC	ENSMUSG00000028613.16	novel	4618	18	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	45	junction_4	16.2922527601311	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGTTTCCTTGTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	107659481	107734034	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ES_00041826	chr4	+	2571	7	FSM	ENSMUSG00000028608.16	ENSMUST00000120473.8	835	7	-29	-1707	-9	0	multi-exon	FALSE	canonical	3	475	junction_1	106.405931330082	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGCATGCCAGGGTTT	NA	False	NA	-51	True	NA	NA	NA	107747036	107754250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069
ES_00041827	chr4	+	2965	11	FSM	ENSMUSG00000008932.11	ENSMUST00000238795.2	3005	11	37	3	37	-3	multi-exon	TRUE	canonical	0	0	junction_7	1.32664991614216	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGTGACAGACTATGTG	2433	False	NA	NA	False	AATAAA	-25	NA	107825567	107870726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_107825908_107834800_107834881_107850135_107850352_107859373_107859417_107861466_107861687_107864686_107864787_107865337_107865572_107866875_107867071_107867566_107867702_107868089_107868193_107869427
ES_00041828	chr4	+	737	4	FSM	ENSMUSG00000028601.19	ENSMUST00000127392.2	737	4	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_1	34.4189870081423	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTTCCATACTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	108030886	108036256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108031372_108034269_108034321_108035567_108035616_108036103
ES_00041829	chr4	+	345	1	Intergenic	novelGene_2839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTAGCTTTCTTTTT	7431	False	NA	NA	False	NA	NA	NA	108200511	108200856	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108200500_108200900
ES_00041830	chr4	+	5856	30	NIC	ENSMUSG00000034610.15	novel	6054	31	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_25	27.6159322606615	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATTTGGTTAATTCAT	NA	False	NA	15	True	AATAAA	-15	NA	108317212	108416612	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406422_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ES_00041831	chr4	+	2917	23	FSM	ENSMUSG00000028582.15	ENSMUST00000134844.2	2917	23	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_5	47.2028329448194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	1542	False	NA	13	True	NA	NA	NA	108480759	108491320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483234_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
ES_00041835	chr4	+	285	2	FSM	ENSMUSG00000028567.9	ENSMUST00000154017.2	511	2	226	0	226	0	multi-exon	FALSE	canonical	3	807	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGGTGCGTCCTGAAAT	NA	False	NA	NA	False	AATAGA	-8	NA	108714914	108716479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_108715192_108716471
ES_00041836	chr4	+	1076	4	Intergenic	novelGene_2845	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	3.2659863237109	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGAGCATGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	109862647	109866106	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_109862813_109863820_109863952_109864517_109864840_109865648
ES_00041837	chr4	+	567	5	FSM	ENSMUSG00000034401.17	ENSMUST00000140366.8	546	5	-21	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	43.7457140757812	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGGATTTCTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	111577234	111626014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625896
ES_00041838	chr4	+	2347	12	NIC	ENSMUSG00000034401.17	novel	2466	13	NA	NA	9	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	34.740835048034	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACCTCTGGTATTTTCA	NA	False	NA	15	True	AATAAA	-30	NA	111577268	111686334	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_111577455_111603337_111603476_111604951_111605001_111625896_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
ES_00041839	chr4	+	526	1	FSM	ENSMUSG00000083599.2	ENSMUST00000120022.2	600	1	42	32	42	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGAACCAATTCGCCGA	NA	False	NA	NA	False	NA	NA	NA	112394299	112394825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_112394300_112394800
ES_00041840	chr4	+	4990	16	NIC	ENSMUSG00000028718.17	novel	5285	17	NA	NA	14	-10	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	19.0251295805194	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCATAACTGAAAAAAACTG	NA	False	NA	NA	False	ATTAAA	-7	NA	114857392	114900383	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ES_00041841	chr4	+	3150	5	Fusion	ENSMUSG00000028710.19_ENSMUSG00000028709.4	novel	2884	4	NA	NA	-5496	0	multi-exon	FALSE	canonical	1	1	junction_1	21.3936322301754	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTGGGAAGTGGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	115679792	115693382	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_115679853_115685082_115685439_115688419_115688887_115690829_115691033_115691318
ES_00041842	chr4	+	1526	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_12	47.0592858943789	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCCTGTGGCAGCCTTG	NA	False	NA	5	True	AATAAA	-11	NA	115696411	115736442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115736141
ES_00041843	chr4	+	2530	13	NNC	ENSMUSG00000028708.17	novel	1686	10	NA	NA	8210	-4	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	47.5225092865359	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTGTGGCAGCCTTGG	NA	False	NA	6	True	AATAAA	-12	NA	115704666	115736443	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_115704742_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ES_00041845	chr4	+	2247	22	NNC	ENSMUSG00000028700.15	novel	2719	22	NA	NA	3	-59	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_11	90.5601114555855	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAACATGGAATTTAATT	NA	False	NA	NA	False	NA	NA	NA	116007717	116016575	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012262_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
ES_00041849	chr4	+	799	4	FSM	ENSMUSG00000028689.15	ENSMUST00000125671.8	793	4	-6	0	-4	0	multi-exon	FALSE	canonical	3	19	junction_2	23.4236347876812	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTGGGCCAATTCTTT	5639	False	NA	NA	False	NA	NA	NA	116565788	116567000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920
ES_00041850	chr4	+	1152	9	NIC	ENSMUSG00000028689.15	novel	1159	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	27.3012705748286	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCTCTGTAAATCTTG	5639	False	NA	16	True	AATAAA	-20	NA	116565788	116572301	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_116565854_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571212_116571347_116572036
ES_00041851	chr4	+	1481	9	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	0	0	intron_retention	FALSE	canonical	1	3	junction_1	23.2671307857243	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5671	False	NA	11	True	AATAAA	-15	NA	116565820	116572296	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_116566292_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ES_00041852	chr4	+	661	4	FSM	ENSMUSG00000028683.15	ENSMUST00000151760.8	661	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	310.936578027667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAATCTAGTCAAAGCC	NA	False	NA	NA	False	AATAAA	-20	NA	116923667	116931497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116923762_116925940_116926019_116927835_116927985_116931157
ES_00041853	chr4	+	386	3	Intergenic	novelGene_2862	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_2	1217.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	116937870	117009378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116937923_116941901_116942106_117009248
ES_00041854	chr4	+	4377	22	FSM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	-21	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	14.3447984520657	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGATGGCTGGAGTTTT	NA	False	NA	2	True	AATATA	-16	NA	116953271	116972580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_116953625_116954043_116954237_116961929_116962120_116962226_116962297_116962430_116962523_116963131_116963328_116965095_116965218_116965356_116965500_116965579_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ES_00041855	chr4	+	1160	8	NNC	ENSMUSG00000006392.17	novel	1134	7	NA	NA	5	23304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	267.906624001113	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCAGGCAGTGGTGGAGC	NA	False	NA	NA	False	NA	NA	NA	118266538	118296283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920_118272303_118296246
ES_00041857	chr4	+	1146	10	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	0	53686	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	763.586566437915	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAGCAACAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	118478044	118538659	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118483179_118538629
ES_00041858	chr4	+	512	3	Intergenic	novelGene_2867	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGAGCTTGTATAATGC	NA	False	NA	NA	False	NA	NA	NA	118930171	118941590	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_118930271_118930792_118930857_118941241
ES_00041860	chr4	+	1366	2	Antisense	novelGene_ENSMUSG00000083836.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	162	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGAGGTGGTGCTCGTGG	287	False	NA	-25	True	NA	NA	NA	119136546	119227258	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_119137760_119227105
ES_00041861	chr4	+	1949	11	ISM	ENSMUSG00000032998.17	ENSMUST00000044564.15	4789	13	-99	5707	-99	0	5prime_fragment	FALSE	canonical	3	55	junction_6	30.9896757001425	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGGCTTAGTAAACTTC	NA	False	NA	NA	False	NA	NA	NA	119396758	119480609	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119467186_119467289_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417
ES_00041862	chr4	+	390	2	FSM	ENSMUSG00000032998.17	ENSMUST00000133097.2	553	2	163	0	163	0	multi-exon	FALSE	canonical	3	105	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGGCTTAGTAAACTTC	NA	False	NA	NA	False	NA	NA	NA	119478701	119480609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_119478900_119480417
ES_00041866	chr4	+	204	1	Intergenic	novelGene_2879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATACTTTTTTGATAAGC	NA	False	NA	NA	False	NA	NA	NA	122918502	122918706	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122918500_122918700
ES_00041868	chr4	+	205	2	Antisense	novelGene_ENSMUSG00000028651.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	82	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	123031574	123038512	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_123031625_123038357
ES_00041869	chr4	+	3035	15	NNC	ENSMUSG00000011257.20	novel	3019	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_14	92.6910602650613	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	NA	False	NA	-2	True	AATAAA	-21	NA	123176635	123192615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191845_123192305
ES_00041871	chr4	+	433	4	FSM	ENSMUSG00000028647.14	ENSMUST00000106202.4	1536	4	76	1027	-51	326	multi-exon	FALSE	canonical	3	305	junction_3	15.9652400197707	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTAGCTCAGTTGTAG	NA	False	NA	NA	False	NA	NA	NA	123798782	123803842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629
ES_00041872	chr4	+	309	1	Intergenic	novelGene_2890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	416	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGAGGGATGCTGAAAAG	NA	False	NA	NA	False	NA	NA	NA	123808154	123808463	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_123808200_123808500
ES_00041873	chr4	+	511	1	Genic_Genomic	ENSMUSG00000032643.13	novel	NA	NA	NA	NA	7383	2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGCCCCGTGTATTTGTC	NA	False	NA	6	True	AATAAA	-17	NA	124601895	124602406	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_+_124601900_124602400
ES_00041875	chr4	+	552	1	FSM	ENSMUSG00000082062.2	ENSMUST00000118517.2	552	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCTCTGTGCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	125398080	125398632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_125398100_125398600
ES_00041876	chr4	+	3135	15	FSM	ENSMUSG00000028859.15	ENSMUST00000030673.7	3160	15	25	0	25	0	multi-exon	FALSE	canonical	0	0	junction_11	2.96922995583236	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACTTGTTTTGTGGGGA	NA	False	NA	NA	False	AATAAA	-19	NA	125921109	125938232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_125921194_125923555_125923856_125925590_125925715_125925904_125926093_125927962_125928133_125928214_125928369_125929091_125929172_125929558_125929773_125931312_125931502_125931820_125931923_125933298_125933446_125933554_125933690_125936452_125936544_125936696_125936779_125937157
ES_00041877	chr4	+	4991	26	FSM	ENSMUSG00000042489.16	ENSMUST00000048391.15	5027	26	36	0	-24	0	multi-exon	FALSE	canonical	1	1	junction_10	26.925794324402	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCAGCTCTAGTG	NA	False	NA	30	True	AATAAA	-23	NA	126450763	126487696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467102_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
ES_00041878	chr4	+	2868	2	FSM	ENSMUSG00000073755.5	ENSMUST00000164362.2	2855	2	-17	4	-17	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGTTCCAGGATATGT	7781	False	NA	5	True	AATAAA	-15	NA	126503629	126508160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126503806_126505468
ES_00041879	chr4	+	752	1	FSM	ENSMUSG00000081210.2	ENSMUST00000120203.2	872	1	115	5	115	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGGATTTTGTACAAGA	2118	False	NA	NA	False	NA	NA	NA	126559161	126559913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_126559200_126559900
ES_00041880	chr4	+	220	1	Intergenic	novelGene_2907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1055	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTTCCACC	1137	False	NA	NA	False	NA	NA	NA	126567179	126567399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126567200_126567400
ES_00041881	chr4	+	4442	21	NIC	ENSMUSG00000028830.15	novel	4384	21	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	15.138031576133	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647354	126748129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_126647639_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
ES_00041882	chr4	+	215	1	Intergenic	novelGene_2910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCACTGCTTTGAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	126877861	126878076	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126877900_126878100
ES_00041884	chr4	+	212	2	Intergenic	novelGene_2914	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	22	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACACAGAAATACTATAAGA	NA	False	NA	NA	False	NA	NA	NA	126954074	126993497	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126954130_126993340
ES_00041886	chr4	+	3922	12	NNC	ENSMUSG00000042388.15	novel	2901	10	NA	NA	355	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	52.1746906757236	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAATCTCTCCAGAAGAG	NA	False	NA	17	True	AATAAA	-20	NA	127063351	127130815	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_127063552_127086867_127086951_127088354_127089507_127093465_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ES_00041887	chr4	+	3186	9	ISM	ENSMUSG00000042388.15	ENSMUST00000106094.9	4207	12	26094	0	-4332	0	3prime_fragment	FALSE	canonical	3	155	junction_4	13.1600721882519	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAATCTCTCCAGAAGAG	NA	False	NA	17	True	AATAAA	-20	NA	127092766	127130815	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ES_00041888	chr4	+	612	6	NIC	ENSMUSG00000057572.16	novel	3833	7	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_5	263.339021035622	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229833	129240826	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129240596
ES_00041889	chr4	+	202	1	Intergenic	novelGene_2929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGGTTCTTAAAATCAGC	NA	False	NA	NA	False	NA	NA	NA	129368818	129369020	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129368800_129369000
ES_00041890	chr4	+	580	2	FSM	ENSMUSG00000078554.3	ENSMUST00000135698.2	587	2	0	7	0	-7	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCATTCCGGGCTGGCC	2288	False	NA	NA	False	AATAAA	-41	NA	129385032	129385742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_129385355_129385484
ES_00041891	chr4	+	5256	27	NIC	ENSMUSG00000028782.15	novel	5170	28	NA	NA	-85	0	intron_retention	TRUE	canonical	2	10	junction_2	6.98868485312733	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGCCCGGATTGTTT	NA	False	NA	9	True	AATAAA	-15	NA	129878871	129916426	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_129879101_129885846_129886673_129898817_129898902_129899182_129899348_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ES_00041893	chr4	+	2016	7	NNC	ENSMUSG00000028779.17	novel	1915	6	NA	NA	67	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	104.338258669686	66	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	4347	False	NA	25	True	AATAAA	-32	NA	129996417	130021927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_129996521_130000150_130000320_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ES_00041894	chr4	+	543	2	Antisense	novelGene_ENSMUSG00000028772.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	130229570	130235228	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_130229956_130235070
ES_00041895	chr4	+	2683	7	NNC	ENSMUSG00000078532.10	novel	1202	7	NA	NA	0	1471	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	31.3975405972435	142	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGTCTTGCCCTCTTGG	NA	False	NA	19	True	ATTAAA	-25	NA	130297196	130341115	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130297542_130332055_130332194_130333903_130333985_130337200_130337399_130338581_130338643_130339094_130339171_130339331
ES_00041897	chr4	+	5455	22	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-172	0	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_3	163.105950291239	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390459	130508873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130445467_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00041898	chr4	+	5067	21	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	103	junction_13	159.256546176288	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390716	130508875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ES_00041899	chr4	+	384	1	FSM	ENSMUSG00000119649.1	ENSMUST00000083856.3	83	1	4	-305	4	305	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCCCACTCTCCAAGAAA	NA	False	NA	NA	False	NA	NA	NA	130493645	130494029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_130493600_130494000
ES_00041900	chr4	+	1973	8	NNC	ENSMUSG00000040533.8	novel	2001	8	NA	NA	11	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5.36808406515884	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGCTGTACACCCTGGAT	1502	False	NA	NA	False	AATAAA	-15	NA	130671706	130682769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681727_130682276
ES_00041902	chr4	+	243	2	Antisense	novelGene_ENSMUSG00000040025.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAACAGAACATTTCTT	NA	False	NA	NA	False	NA	NA	NA	131898975	131913586	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_131899007_131913374
ES_00041903	chr4	+	398	2	Antisense	novelGene_ENSMUSG00000084105.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTAATTAAACAATAATAGC	NA	False	NA	NA	False	NA	NA	NA	131918343	131977360	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_131918611_131977229
ES_00041905	chr4	+	307	3	NNC	ENSMUSG00000091021.2	novel	1527	2	NA	NA	-55149	10964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTCTCAGAATAACCCC	NA	False	NA	NA	False	NA	NA	NA	132023933	132091657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_132023971_132079245_132079327_132091468
ES_00041907	chr4	+	613	8	FSM	ENSMUSG00000054405.15	ENSMUST00000138334.8	613	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	1070.81689206256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAGGACCAGAGCCTCC	2421	False	NA	NA	False	NA	NA	NA	132262950	132280450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ES_00041909	chr4	+	840	5	FSM	ENSMUSG00000037692.15	ENSMUST00000142524.8	938	5	98	0	-14	0	multi-exon	FALSE	canonical	3	37	junction_1	10.8943792847505	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACAACGGGCGTGTGAA	1873	False	NA	NA	False	NA	NA	NA	132739500	132789087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_132739599_132782323_132782515_132788091_132788204_132788337_132788376_132788686
ES_00041910	chr4	+	6504	7	NNC	ENSMUSG00000037692.15	novel	5898	6	NA	NA	0	113	intron_retention	TRUE	non_canonical	0	0	junction_6	38.8733699193791	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATTTAGATGCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	132766803	132805287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_132767098_132782323_132782515_132788091_132788204_132788337_132788376_132788686_132793589_132804297_132804933_132804955
ES_00041912	chr4	+	2302	1	NIC	ENSMUSG00000037692.15	novel	517	2	NA	NA	3139	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAACCATGCCCAAGACA	1409	False	NA	NA	False	NA	NA	NA	132796698	132799000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_132796700_132799000
ES_00041913	chr4	+	1284	5	NIC	ENSMUSG00000028865.15	novel	986	6	NA	NA	77	0	intron_retention	FALSE	canonical	3	38	junction_4	6.80073525436772	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948197	132951866	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
ES_00041914	chr4	+	625	3	Intergenic	novelGene_2958	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_2	3	34	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAATGTTTATTTCTAGA	NA	False	NA	NA	False	NA	NA	NA	133238410	133239703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133238502_133238583_133238667_133239252
ES_00041916	chr4	+	5578	22	FSM	ENSMUSG00000012123.18	ENSMUST00000227683.2	5578	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	46.1690672034849	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133788125	133819815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_133788242_133790613_133790684_133792549_133793266_133799740_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ES_00041917	chr4	+	1142	8	NNC	ENSMUSG00000012126.17	novel	685	3	NA	NA	-4712	50	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	33.0583899011604	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGGTGGTAGAGATGCTC	NA	False	NA	65	True	NA	NA	NA	133846067	133854137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_133846239_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ES_00041918	chr4	+	2183	9	NNC	ENSMUSG00000028834.14	novel	1886	9	NA	NA	-300	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	8.0068330193654	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTATGAAAGAAGTGTGA	NA	False	NA	NA	False	AATAAA	-28	NA	134042130	134056940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053019_134055017_134055094_134056215
ES_00041919	chr4	+	2154	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	197	0	-81	0	multi-exon	FALSE	canonical	1	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGTTTTGACTCCTGT	NA	False	NA	19	True	AATAAA	-20	NA	134224204	134236124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134224348_134234113
ES_00041920	chr4	+	734	5	FSM	ENSMUSG00000037266.19	ENSMUST00000154837.8	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	392.039219976777	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134651770	134654683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134651794_134652603_134652744_134653087_134653133_134654045_134654130_134654241
ES_00041921	chr4	+	247	2	FSM	ENSMUSG00000070691.11	ENSMUST00000156478.2	447	2	0	200	0	-17	multi-exon	FALSE	canonical	3	7	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCGATTCGTGGGCCGCA	6604	False	NA	NA	False	NA	NA	NA	134880248	134882720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_134880368_134882592
ES_00041922	chr4	+	348	2	Antisense	novelGene_ENSMUSG00000043924.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAACGCTACTATTGTT	NA	False	NA	NA	False	NA	NA	NA	135095954	135098792	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_+_135096077_135098566
ES_00041923	chr4	+	1770	5	NNC	ENSMUSG00000028801.15	novel	1507	9	NA	NA	28930	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	6.02079728939615	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCTCTGATCCTTGG	NA	False	NA	NA	False	CATAAA	-18	NA	135252227	135265116	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_135252300_135252730_135252843_135256802_135256969_135260949_135261141_135263887
ES_00041924	chr4	+	5045	33	ISM	ENSMUSG00000037139.16	ENSMUST00000105854.2	5575	37	5847	0	5847	0	3prime_fragment	FALSE	canonical	1	1	junction_3	3.626616019101	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGCACCCGTGGTCTCTG	NA	False	NA	NA	False	AATAAA	-29	NA	135492872	135542875	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_135493013_135497981_135498078_135498842_135498932_135501075_135501121_135501591_135501733_135502855_135503018_135503645_135503788_135505347_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
ES_00041927	chr4	+	1526	11	NIC	ENSMUSG00000028671.17	novel	1430	11	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	48.5469875481476	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4574	False	NA	11	True	AATAAA	-19	NA	135691049	135695489	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_135691100_135692536_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
ES_00041929	chr4	+	214	1	FSM	ENSMUSG00000083852.2	ENSMUST00000121866.2	365	1	154	-3	154	3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTCCTTATTATC	NA	False	NA	NA	False	AAGAAA	-25	NA	135724987	135725201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_135725000_135725200
ES_00041930	chr4	+	1643	1	FSM	ENSMUSG00000066178.5	ENSMUST00000084593.3	1728	1	83	2	83	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGACCAGATAGTTGGTG	143	False	NA	NA	False	AATAAA	-12	NA	136189643	136191286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_136189600_136191300
ES_00041931	chr4	+	1410	10	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	3	58547	3	-16814	5prime_fragment	TRUE	canonical	3	21	junction_4	6.76227735764575	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGCCGTCCCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	137196082	137239394	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152
ES_00041932	chr4	+	5725	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	0	-2	intron_retention	FALSE	canonical	3	237	junction_13	322.560439780494	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTATCCGGAGTGAG	570	False	NA	14	True	ATTAAA	-24	NA	137321517	137385839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00041936	chr4	+	5720	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	2	-2	intron_retention	FALSE	canonical	3	237	junction_13	327.669427582573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTATCCGGAGTGAG	572	False	NA	14	True	ATTAAA	-24	NA	137321519	137385839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00041937	chr4	+	5669	27	NIC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	2	0	intron_retention	FALSE	canonical	3	659	junction_9	223.123509724359	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	572	False	NA	17	True	ATTAAA	-27	NA	137321519	137385842	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00041938	chr4	+	5723	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	2	0	intron_retention	FALSE	canonical	3	555	junction_19	264.570952206992	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	572	False	NA	17	True	ATTAAA	-27	NA	137321519	137385842	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ES_00041940	chr4	+	3100	10	FSM	ENSMUSG00000045349.16	ENSMUST00000105824.8	3512	10	43	369	-18	-369	multi-exon	FALSE	canonical	1	2	junction_6	2.55796987404919	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGAAGTCGTTTTCCTG	NA	False	NA	NA	False	AATAAA	-18	NA	137977756	137988274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_137977820_137981141_137981270_137981583_137981665_137982008_137982084_137982862_137983010_137984023_137984276_137984425_137984601_137984915_137985025_137985479_137985640_137986364
ES_00041941	chr4	+	1648	6	FSM	ENSMUSG00000028750.13	ENSMUST00000030530.6	1618	6	-33	3	-33	-3	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGGGCTGGTGTCTGAA	NA	False	NA	NA	False	AGTAAA	-12	NA	138452602	138471883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_138452800_138453041_138453169_138458834_138458936_138461572_138461718_138463292_138463397_138470909
ES_00041942	chr4	+	673	5	FSM	ENSMUSG00000041143.17	ENSMUST00000123636.8	660	5	-13	0	-13	0	multi-exon	FALSE	canonical	3	6	junction_1	27.427176303805	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTTTTCTGTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	138700185	138718031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_138700301_138704518_138704634_138710931_138711077_138712442_138712562_138717852
ES_00041944	chr4	+	15956	107	NIC	ENSMUSG00000066036.15	novel	15928	106	NA	NA	4	6	combination_of_known_junctions	TRUE	canonical	0	0	junction_53	99.0528462899202	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTAGCTGCTGCTTGCCCA	NA	False	NA	28	True	AATAAA	-29	NA	139107973	139216847	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_139108174_139115678_139115777_139118150_139118255_139119095_139119226_139119330_139119471_139120094_139120198_139120327_139120470_139120605_139120731_139123867_139123993_139124463_139124524_139124604_139124796_139126872_139126973_139127107_139127246_139127635_139127754_139128591_139128780_139129819_139129980_139130057_139130144_139133789_139133960_139135023_139135307_139135850_139135987_139136149_139136230_139136983_139137113_139137398_139137582_139137717_139137841_139137932_139138163_139139936_139140059_139140722_139140821_139141653_139141812_139142310_139142521_139143863_139143966_139144166_139144268_139144501_139144701_139145712_139145902_139146478_139146543_139147689_139147882_139148391_139148463_139148541_139148690_139149007_139149236_139149703_139149875_139151137_139151321_139152070_139152230_139152523_139152677_139153009_139153238_139154088_139154247_139155345_139155518_139155800_139156003_139156802_139156967_139157434_139157652_139158855_139159073_139160930_139160995_139161304_139161440_139162320_139162496_139163259_139163344_139163432_139163571_139164383_139164506_139165360_139165473_139167721_139167853_139167955_139168134_139168502_139168608_139169996_139170135_139170709_139170885_139171905_139172003_139172554_139172663_139173169_139173287_139174169_139174380_139176132_139176283_139177625_139177854_139178556_139178636_139179038_139179285_139179881_139180051_139180445_139180591_139181282_139181369_139182477_139182566_139182758_139182953_139184842_139185083_139185405_139185545_139186109_139186236_139186336_139186466_139187309_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ES_00041945	chr4	+	1041	1	ISM	ENSMUSG00000041025.16	ENSMUST00000174078.2	5716	9	44622	0	44622	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTATGCTGCTTTGT	8347	False	NA	13	True	AATAAA	-19	NA	139346652	139347693	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_139346700_139347700
ES_00041946	chr4	+	1720	3	FSM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	12.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAGAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	140107940	140112885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140108031_140109400_140109529_140111383
ES_00041947	chr4	+	3858	29	NNC	ENSMUSG00000036622.16	novel	3882	29	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	27.5084402632044	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1423	False	NA	12	True	AATAAA	-17	NA	140714204	140734641	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721625_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140734063_140734160_140734251
ES_00041948	chr4	+	4272	26	FSM	ENSMUSG00000036622.16	ENSMUST00000151517.8	4266	26	-6	0	-6	0	multi-exon	FALSE	canonical	3	40	junction_18	19.0286520804812	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1423	False	NA	12	True	AATAAA	-17	NA	140714204	140734641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140734160_140734251
ES_00041949	chr4	+	877	5	FSM	ENSMUSG00000036622.16	ENSMUST00000137630.3	877	5	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	12.2346843032422	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCATCCTGGTCCCCGGC	NA	False	NA	NA	False	NA	NA	NA	140731727	140734034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662
ES_00041950	chr4	+	316	1	ISM	ENSMUSG00000086061.8	ENSMUST00000149247.2	1621	4	11163	856	11163	262	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACACAGGGAGGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	141137330	141137646	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_141137300_141137600
ES_00041951	chr4	+	1640	9	NIC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	-36	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	54.6601717432355	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGGGGCTGCTCTCTG	NA	False	NA	NA	False	AAAAAG	-21	NA	141520886	141540997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_141521298_141523748_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ES_00041952	chr4	+	2239	2	FSM	ENSMUSG00000028584.4	ENSMUST00000052458.3	2324	2	83	2	83	-2	multi-exon	FALSE	canonical	2	3	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCCTGTAGTCTATTGG	NA	False	NA	NA	False	AATAAA	-18	NA	143076409	143097600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_143077382_143096333
ES_00041953	chr4	+	204	2	Intergenic	novelGene_2997	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATAAGATACCCTTGGCA	NA	False	NA	NA	False	NA	NA	NA	143710575	143710843	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_143710622_143710685
ES_00041954	chr4	+	829	2	NNC	ENSMUSG00000028590.7	novel	767	2	NA	NA	-1103	4	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTAATGTTGGTATTCT	NA	False	NA	NA	False	NA	NA	NA	144130334	144132875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_144130877_144132588
ES_00041955	chr4	+	8076	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	545	3	NA	NA	12	-2123	multi-exon	FALSE	non_canonical	0	0	junction_3	209.818224899554	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACGAAAGTAGTAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	145136847	145263635	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145136997_145138756_145138851_145176036_145182486_145260603_145261513_145263160
ES_00041958	chr4	+	8648	3	Fusion	ENSMUSG00000083081.2_ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14987	4120	multi-exon	FALSE	canonical	3	19	junction_2	20	218	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGTTGTCCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	145158322	145187069	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145159152_145176036_145183755_145186968
ES_00041959	chr4	+	485	4	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14289	-120	multi-exon	TRUE	non_canonical	0	0	junction_1	45.7262385167301	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTCCCAAAAATCTCA	NA	False	NA	-53	True	NA	NA	NA	145159020	145176206	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145159152_145173065_145173196_145173287_145173342_145176036
ES_00041961	chr4	+	2719	8	Fusion	ENSMUSG00000078502.11_ENSMUSG00000078503.10	novel	1221	3	NA	NA	2	0	multi-exon	FALSE	canonical	0	0	junction_1	22.7891846886963	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	928	False	NA	NA	False	NA	NA	NA	145237362	145351911	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145237496_145312571_145312707_145313929_145314095_145322185_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
ES_00041962	chr4	+	1633	2	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	0	769	multi-exon	FALSE	canonical	1	4	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTATTGTTGTCCTTT	5019	False	NA	NA	False	AGTAAA	-12	NA	145241453	145302500	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145241589_145301002
ES_00041963	chr4	+	2676	5	FSM	ENSMUSG00000078502.11	ENSMUST00000119718.8	2498	5	-178	0	-141	0	multi-exon	TRUE	canonical	0	0	junction_1	22.5111083689809	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	145311594	145351911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_145311905_145343687_145343746_145347127_145347255_145348721_145349454_145350462
ES_00041965	chr4	+	509	1	NIC	ENSMUSG00000081885.2	novel	2850	2	NA	NA	1514	-1020	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAAGCTCTCCAAGAT	NA	False	NA	NA	False	NA	NA	NA	145369440	145369949	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_145369400_145369900
ES_00041966	chr4	+	665	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	2	-1618	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	187.784344395373	218	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATCCATGAATCCT	NA	False	NA	NA	False	NA	NA	NA	145397256	145427592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145397419_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145427474
ES_00041967	chr4	+	2626	7	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43775	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	159.402443171016	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	145508031	145556512	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145508210_145510590_145510684_145516045_145516128_145551778_145551837_145552678_145552806_145554256_145555095_145555262
ES_00041972	chr4	+	1031	7	Fusion	ENSMUSG00000078500.4_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43736	-774	multi-exon	FALSE	canonical	3	11	junction_3	88.9370876269037	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTACCATTAGTCTCAA	NA	False	NA	NA	False	AATACA	-27	NA	145508070	145625758	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_145508381_145510590_145510684_145516048_145516128_145551778_145551837_145618982_145619087_145623213_145623341_145625498
ES_00041973	chr4	+	963	6	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-87293	-774	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	106.193408458341	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTACCATTAGTCTCAA	NA	False	NA	NA	False	AATACA	-27	NA	145508070	145625758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_145508381_145510590_145510684_145541336_145541406_145618982_145619087_145623213_145623341_145625498
ES_00041978	chr4	+	576	6	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	266	2	NA	NA	0	-159	multi-exon	FALSE	canonical	1	2	junction_1	188.754867486907	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGAAACACAGCACATT	NA	False	NA	NA	False	NA	NA	NA	146033867	146131580	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146034017_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535
ES_00041983	chr4	+	1015	6	NNC	ENSMUSG00000085525.8	novel	280	2	NA	NA	-7083	38390	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	50.2250933299282	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGTAAACAGTTTAAC	NA	False	NA	NA	False	AATACA	-3	NA	146199817	146253394	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146200273_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
ES_00041984	chr4	+	709	7	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	-6778	-4077	multi-exon	TRUE	canonical	0	0	junction_2	276.627306437139	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146200122	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146200273_146209452_146209518_146502821_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00041985	chr4	+	732	6	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	-6778	-4077	multi-exon	FALSE	canonical	3	35	junction_4	271.011881658351	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146200122	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146200273_146209452_146209546_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00041988	chr4	+	903	6	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	1	-4077	multi-exon	FALSE	canonical	3	35	junction_4	262.053734947625	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206901	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207223_146209452_146209546_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00041989	chr4	+	669	6	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	0	-4077	multi-exon	FALSE	canonical	3	35	junction_4	247.625039121653	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209546_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00041990	chr4	+	755	8	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	4550	4	NA	NA	0	-4077	multi-exon	FALSE	canonical	0	0	junction_2	265.114376549182	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209518_146502821_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00041991	chr4	+	709	7	Fusion	ENSMUSG00000070605.5_ENSMUSG00000085525.8	novel	282	3	NA	NA	0	-4077	multi-exon	FALSE	canonical	0	0	junction_2	296.616849749901	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206941	146550672	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_146207052_146209452_146209518_146502821_146502850_146508052_146508139_146547961_146548020_146548860_146548988_146550437
ES_00041992	chr4	+	988	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297147	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	148.132542002087	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2278	False	NA	NA	False	NA	NA	NA	146289336	146627265	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146289526_146597241_146597335_146616526_146616611_146619877_146620005_146626770
ES_00041995	chr4	+	2220	5	Intergenic	novelGene_3016	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	239.358909380871	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	2295	False	NA	NA	False	NA	NA	NA	146289353	146319729	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146289526_146291416_146291510_146295675_146295763_146312866_146312972_146317966
ES_00041999	chr4	+	627	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-168359	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	306.987275794942	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146365120	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146365259_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ES_00042001	chr4	+	4391	7	Intergenic	novelGene_3023	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	160.063181969565	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	146365127	146806013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146365259_146428065_146428160_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146803953_146804037
ES_00042002	chr4	+	4392	7	Intergenic	novelGene_3024	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_6	159.261577287179	312	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	146370030	146806013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146370163_146428065_146428160_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146803953_146804037
ES_00042004	chr4	+	4347	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159933	182161	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	183.028522367417	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	146426550	146806013	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146426715_146428065_146428160_146616526_146616611_146800390_146800518_146802050_146803953_146804037
ES_00042006	chr4	+	4344	6	Intergenic	novelGene_3025	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_5	176.66238988534	108	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	146426554	146806013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146426715_146428065_146428160_146797295_146797381_146800390_146800518_146802050_146803953_146804037
ES_00042007	chr4	+	669	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-106875	-4077	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	299.280871423484	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146426604	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146426715_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00042008	chr4	+	758	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33288	-4078	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	86.480055504145	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACTCTGTAAACAGTTTA	NA	False	NA	NA	False	AATACA	-1	NA	146500191	146550671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500373_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548984_146550437
ES_00042010	chr4	+	949	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33243	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	269.518964494564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500236	146550672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146500544_146502756_146502850_146508055_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ES_00042012	chr4	+	917	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	6	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	171.408867915286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586489	146627265	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146586602_146616526_146616611_146619877_146620005_146621233_146621333_146626770
ES_00042018	chr4	+	904	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	80.0314938008782	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATGACTCTGTAAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	146695443	146742064	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_146695757_146697966_146698060_146703608_146703692_146739355_146739414_146740256_146740384_146741834
ES_00042020	chr4	+	4324	6	Intergenic	novelGene_3030	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	185.435056016925	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	146712249	146806013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_146712391_146714050_146714144_146797295_146797381_146800390_146800518_146802050_146803953_146804037
ES_00042025	chr4	+	2855	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	722	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	120.495389492249	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147075934	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147056575_147058404_147058509_147065612_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
ES_00042026	chr4	+	2669	5	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	2	722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.5586080332859	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056434	147075934	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147056575_147067150_147067255_147071090_147071218_147073383_147074794_147075046
ES_00042028	chr4	+	3776	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	261.808021267493	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2311	False	NA	NA	False	AATAAA	-19	NA	147106334	147145251	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147106458_147115003_147115080_147136965_147137048_147140055_147140183_147141715_147142954_147143121
ES_00042029	chr4	+	3480	7	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	0	332413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	256.164931679225	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATCGCTGGAACTA	2311	False	NA	NA	False	AATAAA	-3	NA	147106334	147477664	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147106458_147115003_147115080_147136965_147137048_147140055_147140183_147141715_147142618_147143121_147143978_147476350
ES_00042032	chr4	+	2813	7	FSM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_5	76.9805170156709	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	147216494	147265036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_147216647_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ES_00042033	chr4	+	1146	8	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	4	1787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.9462102811705	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147216498	147263016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147216818_147217303_147217441_147219028_147219122_147233147_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ES_00042034	chr4	+	652	5	NIC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	13	1787	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	88.0607034948052	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147216507	147263016	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_147216647_147219028_147219122_147260303_147260362_147261203_147261331_147262781
ES_00042036	chr4	+	1389	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078497.10	novel	2813	7	NA	NA	21	5664	multi-exon	FALSE	non_canonical	0	0	junction_2	184.065715167165	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147216515	147481125	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147216568_147216646_147216818_147217303_147217441_147316807_147316901_147395015_147395147_147447267_147447362_147469673_147469759_147472778_147472906_147480626
ES_00042037	chr4	+	3434	9	Fusion	ENSMUSG00000078497.10_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	0	2203	multi-exon	TRUE	non_canonical	0	0	junction_2	230.940705322817	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATCGCTGGAACTA	4110	False	NA	NA	False	AATAAA	-3	NA	147314740	147477664	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147314893_147316807_147316901_147390101_147390233_147393100_147393166_147447333_147447362_147469676_147469759_147472778_147472906_147474656_147475178_147475429
ES_00042038	chr4	+	634	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	1	-1043	multi-exon	FALSE	canonical	3	16	junction_2	211.134287835965	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTCTGATGCTCTTCAA	4111	False	NA	NA	False	NA	NA	NA	147314741	147415883	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147314893_147316807_147316901_147409230_147409335_147413438_147413566_147415724
ES_00042042	chr4	+	2516	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	9	2582	multi-exon	TRUE	canonical	0	0	junction_5	239.480270586117	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	4119	False	NA	12	True	NA	NA	NA	147314749	147600525	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147314893_147316807_147316901_147337753_147337859_147413438_147413566_147596801_147597042_147598717
ES_00042043	chr4	+	831	5	Fusion	ENSMUSG00000078497.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	73	5664	multi-exon	FALSE	canonical	0	0	junction_1	231.416696675067	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147390203	147481125	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147390233_147447267_147447362_147469676_147469759_147472778_147472906_147480626
ES_00042046	chr4	+	801	5	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-31303	-512	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	143.932927087585	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACAAATGTAGTGAATGT	NA	False	NA	NA	False	NA	NA	NA	147545570	147597365	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147545711_147592042_147592098_147595209_147595337_147596801_147597210_147597294
ES_00042048	chr4	+	1183	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	-3798	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.7482551341139	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCGTTATTTCTGCATT	NA	False	NA	15	True	AAGAAA	-18	NA	147576876	147594079	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147593177
ES_00042049	chr4	+	1089	3	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	-3798	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	31	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCGTTATTTCTGCATT	NA	False	NA	15	True	AAGAAA	-18	NA	147576876	147594079	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147592042_147592098_147593177
ES_00042050	chr4	+	3201	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	2582	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	124.355086345513	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	NA	False	NA	12	True	NA	NA	NA	147576876	147600525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147598217_147599053
ES_00042051	chr4	+	3630	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	2582	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	128.891582347336	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	NA	False	NA	12	True	NA	NA	NA	147576876	147600525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147598507_147599008
ES_00042052	chr4	+	3295	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	2582	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	128.891582347336	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	NA	False	NA	12	True	NA	NA	NA	147576876	147600525	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147598217_147599053
ES_00042053	chr4	+	2365	6	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	0	multi-exon	TRUE	non_canonical	0	0	junction_2	128.891582347336	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576876	147669655	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597092_147667988
ES_00042059	chr4	+	2780	25	FSM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	-7	0	-5	0	multi-exon	TRUE	canonical	2	11	junction_23	124.10724948608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAGAAAGATGGTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	148642880	148666847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666218_148666292_148666740
ES_00042060	chr4	+	2689	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	-7	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642911	148666858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ES_00042070	chr4	+	2020	13	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	32	32541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	4996.10810962449	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGAGCGAGCTGGAGCA	NA	False	NA	NA	False	NA	NA	NA	150321440	150365877	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942_150333331_150365846
ES_00042071	chr4	+	7697	22	NIC	ENSMUSG00000039852.18	novel	7728	23	NA	NA	-71	0	combination_of_known_junctions	TRUE	canonical	3	13	junction_20	32.5570143544132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGGCCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	150366031	150706423	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_150366533_150490652_150491122_150515979_150516051_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703457_150703663_150703912
ES_00042075	chr4	+	3431	23	NIC	ENSMUSG00000039523.17	novel	5151	22	NA	NA	33	-119	combination_of_known_junctions	FALSE	canonical	1	1	junction_22	21.1245812712181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATAGTTTTCTATTTG	NA	False	NA	NA	False	AATACA	-43	NA	154059683	154093070	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146_154091228_154092795
ES_00042081	chr4	+	3259	10	ISM	ENSMUSG00000029064.16	ENSMUST00000105616.10	3088	11	11	2	5	0	intron_retention	FALSE	canonical	3	1867	junction_1	619.886269935317	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTGGTGTGATGGTTAT	NA	False	NA	25	True	AATAAA	-17	NA	155575831	155643724	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627
ES_00042082	chr4	+	2756	22	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	155.880092297263	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_155709399_155709641_155709797_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ES_00042084	chr4	+	832	5	NNC	ENSMUSG00000029038.10	novel	1472	5	NA	NA	213	-95	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	710.853887940412	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAAGTGTCTGTTGTTGG	NA	False	NA	22	True	AATAAA	-22	NA	155789804	155818241	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_+_155789919_155799918_155800063_155815781_155815922_155816380_155816503_155817929
ES_00042091	chr4	+	3034	8	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	85	junction_1	45.1781055876604	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8311	False	NA	22	True	NA	NA	NA	156194494	156211722	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
ES_00042092	chr4	+	2609	8	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	4	0	intron_retention	FALSE	canonical	3	23	junction_4	69.4132846192474	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8316	False	NA	20	True	NA	NA	NA	156194499	156211720	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206807_156206874_156207991_156208127_156208432_156208580_156209873
ES_00042093	chr4	+	2799	8	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	97	junction_6	41.8461711607684	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	NA	False	NA	20	True	NA	NA	NA	156198352	156211720	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_+_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ES_00042096	chr4	-	2775	9	FSM	ENSMUSG00000028232.14	ENSMUST00000154922.8	2773	9	0	-2	0	2	multi-exon	FALSE	canonical	1	1	junction_5	30.0083321762473	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAACTATTTTTGGAG	-11	True	NA	NA	False	AATAAA	-16	NA	3574809	3549038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3562019_3562147_3564092_3564258_3569363_3569753_3570320_3570373_3574703
ES_00042097	chr4	-	1239	2	FSM	ENSMUSG00000045573.10	ENSMUST00000070375.8	1449	2	208	2	208	-2	multi-exon	FALSE	canonical	3	7	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATTGTAAGAACTGGCT	738	False	NA	-9	True	AATAAA	-22	NA	4138269	4133532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_4134508_4138005
ES_00042098	chr4	-	1422	2	Intergenic	novelGene_2688	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTCAAAGTGATAGTGT	NA	False	NA	NA	False	NA	NA	NA	8124363	8122895	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_8124231_8124276
ES_00042099	chr4	-	2594	11	NIC	ENSMUSG00000028207.19	novel	2836	13	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	155.026449356231	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	-1	True	NA	-4	True	AATAAA	-17	NA	9669091	9575266	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9635900_9635970_9639197_9639348_9668780
ES_00042102	chr4	-	4216	2	Intergenic	novelGene_2700	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGTCTTTCATGTTTCCT	9843	False	NA	2	True	NA	NA	NA	11181380	11175961	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_11178675_11179877
ES_00042104	chr4	-	3169	26	FSM	ENSMUSG00000040738.11	ENSMUST00000108318.3	3169	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	92.871920406547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	-1	True	NA	-14	True	ATTAAA	-20	NA	11254258	11204382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
ES_00042106	chr4	-	1293	9	NNC	ENSMUSG00000028218.20	novel	1292	8	NA	NA	-7	52905	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	135.472264227775	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGGATTACACAGTCTT	-5	True	NA	NA	False	ATTAAA	-33	NA	12172002	12100503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_12100591_12153816_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
ES_00042107	chr4	-	644	5	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	705	97577	42	58456	internal_fragment	FALSE	canonical	3	19	junction_2	1.4790199457749	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTCATTTTTTATATT	675	False	NA	NA	False	AATACA	-17	NA	15149089	15052505	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
ES_00042108	chr4	-	5642	17	NNC	ENSMUSG00000028228.6	novel	5648	16	NA	NA	0	29413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.8719351685763	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAACACATATTCTCACT	12	True	NA	NA	False	NA	NA	NA	19570083	19489840	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_19489858_19519251_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
ES_00042109	chr4	-	2754	1	FSM	ENSMUSG00000095139.3	ENSMUST00000178174.3	5587	1	1833	1000	1833	-1000	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGCCCAGGTCCCTATG	1928	False	NA	NA	False	AATAAA	-22	NA	22486533	22483779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_22483800_22486500
ES_00042111	chr4	-	225	1	FSM	ENSMUSG00000081789.2	ENSMUST00000117829.2	491	1	270	-4	270	4	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCATCTCCTGGATTT	NA	False	NA	NA	False	NA	NA	NA	25542011	25541786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_25541800_25542000
ES_00042112	chr4	-	812	1	FSM	ENSMUSG00000096105.2	ENSMUST00000178743.2	1224	1	-25	437	-25	-437	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCAGAATTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	26370232	26369420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_26369400_26370200
ES_00042113	chr4	-	4573	16	FSM	ENSMUSG00000040183.14	ENSMUST00000084749.8	4573	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	7.75857948052062	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAGTATTCTACTTTTTA	18	False	NA	-7	True	ATTAAA	-16	NA	32923505	32804034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32824395_32824495_32827088_32827188_32828709_32828809_32836334_32836434_32860321_32860589_32923296
ES_00042114	chr4	-	2267	13	FSM	ENSMUSG00000028294.16	ENSMUST00000029971.12	2246	13	-42	21	-42	-21	multi-exon	FALSE	canonical	0	0	junction_1	2.46644143115812	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTGTCCGCGTATTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	34730248	34688579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34689015_34692386_34692531_34711401_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
ES_00042115	chr4	-	1691	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	0	-3	0	3	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTATTTTTTTCC	16	True	NA	NA	False	ATTAAA	-18	NA	34730178	34711328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
ES_00042116	chr4	-	765	4	NNC	ENSMUSG00000028295.15	novel	782	3	NA	NA	0	43517	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.1465859068001	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCAGGCATTCCCTGGAT	-13	True	NA	NA	False	NA	NA	NA	34778364	34725146	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_34725189_34768667_34769148_34771257_34771415_34778278
ES_00042117	chr4	-	232	2	Intergenic	novelGene_2730	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCAGGCATTCCCTGGAT	NA	False	NA	NA	False	NA	NA	NA	34780951	34725146	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_34725186_34780758
ES_00042118	chr4	-	10013	9	NNC	ENSMUSG00000039967.15	novel	9986	8	NA	NA	14	77966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.5679163821848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCAGGCATTCCCTGGAT	-5	True	NA	NA	False	NA	NA	NA	34882946	34725146	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_34725188_34803112_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34882757
ES_00042119	chr4	-	10235	10	NNC	ENSMUSG00000039967.15	novel	9986	8	NA	NA	14	77966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.3703598782911	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCAGGCATTCCCTGGAT	-5	True	NA	NA	False	NA	NA	NA	34882946	34725146	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_34725188_34803112_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34847810_34848033_34882757
ES_00042121	chr4	-	212	1	Intergenic	novelGene_2733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	34935995	34935783	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_34935800_34936000
ES_00042123	chr4	-	234	2	Antisense	novelGene_ENSMUSG00000042993.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAACTCCTTCCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	35176291	35120804	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_35120829_35176081
ES_00042124	chr4	-	987	1	FSM	ENSMUSG00000080969.2	ENSMUST00000121654.2	768	1	6	-225	6	225	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATGCAACAAAATGTG	NA	False	NA	NA	False	AATAAA	-31	NA	37139868	37138881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_37138900_37139900
ES_00042125	chr4	-	230	2	Intergenic	novelGene_2741	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTTTCTAAATAGAACTA	6200	False	NA	NA	False	NA	NA	NA	40214391	40214110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_40214314_40214364
ES_00042126	chr4	-	4373	30	NNC	ENSMUSG00000028433.15	novel	4368	29	NA	NA	0	38551	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	187.572818994874	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAATAAATAAATAAATA	-12	True	NA	NA	False	NA	NA	NA	41275116	41155761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_41155786_41194315_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ES_00042128	chr4	-	1544	3	FSM	ENSMUSG00000036078.17	ENSMUST00000071561.7	1547	3	0	3	0	-3	multi-exon	FALSE	canonical	3	23	junction_1	290.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGTTTCCTTATGTGTC	3747	False	NA	NA	False	AATAAA	-14	NA	41741359	41738495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_41739581_41740775_41740977_41741101
ES_00042130	chr4	-	2662	5	NIC	ENSMUSG00000073888.14	novel	590	6	NA	NA	0	-146	intron_retention	FALSE	canonical	3	80	junction_4	9.06917857360853	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCCCAGAACCGCAGCCT	28	False	NA	NA	False	NA	NA	NA	41774142	41769623	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_41769655_41769843_41769977_41771137_41773525_41773735_41773804_41774099
ES_00042133	chr4	-	2965	3	FSM	ENSMUSG00000028479.19	ENSMUST00000173383.2	658	3	0	-2307	0	2016	multi-exon	FALSE	canonical	2	3	junction_2	34.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATTTTTAAGCTTATT	33	True	NA	NA	False	AATAAA	-11	NA	44072602	44057683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_44060228_44066754_44066961_44072387
ES_00042134	chr4	-	5178	12	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	22.9112553090116	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGTGTTTCATGTAAGGCG	1281	False	NA	0	True	AATAAA	-26	NA	44167986	44126209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44159004_44159053_44167626
ES_00042135	chr4	-	5222	12	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	-139	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_10	26.04636679348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTCGTGTTTCATGTA	-13	True	NA	-5	True	AATAAA	-21	NA	44233928	44126214	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44187448_44187520_44233542
ES_00042136	chr4	-	3578	10	NNC	ENSMUSG00000035495.16	novel	2700	10	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_3	67.8917075246844	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGAAGAGTGCTCTGTG	18	True	NA	0	True	AATAAA	-28	NA	46138413	46114742	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_46117084_46119142_46119282_46119840_46119914_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138379
ES_00042137	chr4	-	3773	10	NIC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	60	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	62.7194419224353	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTGGGAAGAGTGCTCT	349	False	NA	-3	True	AATAAA	-25	NA	46138349	46114745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138203
ES_00042138	chr4	-	3659	10	NIC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	59.1553719005414	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTGGGAAGAGTGCTCT	178	False	NA	-3	True	AATAAA	-25	NA	46138520	46114745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138491
ES_00042139	chr4	-	1506	5	NNC	ENSMUSG00000028331.13	novel	1527	5	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	51.3438165702551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTCTGTCTGAGCT	14	True	NA	NA	False	ATTAAA	-21	NA	46389409	46379869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387756_46389317
ES_00042140	chr4	-	2503	11	NIC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	2	-3	combination_of_known_splicesites	TRUE	canonical	3	16	junction_8	206.167019670945	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTATCAGCTTCCAGTTC	22	True	NA	NA	False	AATAAA	-26	NA	48279556	48193325	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48241295_48241336_48243476_48243550_48279383
ES_00042141	chr4	-	828	2	FSM	ENSMUSG00000028343.11	ENSMUST00000138743.2	442	2	-386	0	-386	0	multi-exon	FALSE	canonical	3	725	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTTAATTTTTTTCC	NA	False	NA	-28	True	AATAAA	-14	NA	48197410	48194489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_48194710_48196802
ES_00042143	chr4	-	655	1	FSM	ENSMUSG00000086712.3	ENSMUST00000098075.3	655	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTGCAAGCCTATCCTG	NA	False	NA	NA	False	NA	NA	NA	53262547	53261892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_53261900_53262500
ES_00042144	chr4	-	391	1	FSM	ENSMUSG00000084403.2	ENSMUST00000117914.2	387	1	-4	0	-4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	53791460	53791069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_53791100_53791500
ES_00042145	chr4	-	233	1	FSM	ENSMUSG00000083624.2	ENSMUST00000117623.2	207	1	2	-28	2	28	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAGAGAAAGAGAAGGA	NA	False	NA	NA	False	AATAAA	-12	NA	54235874	54235641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_54235600_54235900
ES_00042146	chr4	-	2548	4	ISM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	597	0	-99	0	intron_retention	FALSE	canonical	3	1140	junction_2	71.2756776342549	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAATCTCTTTGTTTTTT	1457	False	NA	-7	True	AATAAA	-21	NA	55531869	55527142	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629
ES_00042147	chr4	-	7989	18	NNC	ENSMUSG00000055296.15	novel	15981	18	NA	NA	-5	5205	at_least_one_novel_splicesite	TRUE	non_canonical	3	40	junction_1	11.8867202224608	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGTATGAACATTATGAA	0	True	NA	NA	False	NA	NA	NA	56947429	56874670	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_56875664_56875875_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56923338_56923509_56924978_56925216_56926176_56926294_56936368_56936471_56937861_56937980_56946844
ES_00042148	chr4	-	759	4	NIC	ENSMUSG00000028434.13	novel	6746	26	NA	NA	3105	-12040	combination_of_known_splicesites	FALSE	canonical	3	23	junction_3	2.82842712474619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTAGTATTTTCTATG	NA	False	NA	NA	False	NA	NA	NA	57024571	57007717	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_57007978_57016853_57016932_57019771_57019959_57024337
ES_00042149	chr4	-	6261	26	FSM	ENSMUSG00000038764.15	ENSMUST00000075637.11	6369	26	116	-8	116	8	multi-exon	FALSE	canonical	1	3	junction_25	12.2497999983673	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAACATTTTTATTTGTG	88	False	NA	8	True	TATAAA	-32	NA	57301721	57190832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57301671
ES_00042150	chr4	-	4283	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	-44	-2128	combination_of_known_junctions	FALSE	canonical	2	9	junction_25	11.3804042107475	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGTATTTTTAAATAGCT	-5	True	NA	-12	True	AATAAA	-18	NA	57300800	57192968	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300592
ES_00042151	chr4	-	3771	5	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	91	266	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	115.15288750179	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAACTAGCACATCAGA	NA	False	NA	NA	False	AATAAA	-24	NA	58553807	58434988	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553729
ES_00042153	chr4	-	5912	49	NIC	ENSMUSG00000050812.19	novel	7045	49	NA	NA	-198	-1119	combination_of_known_junctions	TRUE	canonical	3	51	junction_48	26.1772719352537	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTCCTTATTAGCTTT	3351	False	NA	-12	True	AATAAA	-19	NA	58912128	58800029	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58911868
ES_00042154	chr4	-	1214	10	NNC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	0	-1078	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	133.777962347602	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGATAGAGAATGAAAT	5	True	NA	-5	True	AATAAA	-24	NA	58987119	58966516	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_58966764_58968758_58968878_58970990_58971096_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ES_00042155	chr4	-	3228	15	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	257	493	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	22.6805679661094	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGGTTGTGAGTTTTC	9	True	NA	NA	False	AAAACA	-11	NA	59438376	59314189	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ES_00042156	chr4	-	3129	14	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	242	493	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	28.2096965997247	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGGTTGTGAGTTTTC	-6	True	NA	NA	False	AAAACA	-11	NA	59438391	59314189	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59438205
ES_00042157	chr4	-	600	2	FSM	ENSMUSG00000038578.16	ENSMUST00000136562.2	598	2	0	-2	0	2	multi-exon	FALSE	canonical	3	85	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTTGCATTTACCTTTC	3127	False	NA	NA	False	NA	NA	NA	59333022	59329207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_59329722_59332936
ES_00042160	chr4	-	1437	11	FSM	ENSMUSG00000028391.17	ENSMUST00000107452.8	1437	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	57	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATTTGAAAAATCAGG	NA	False	NA	96	True	NA	NA	NA	62389124	62371870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381711_62382163_62382307_62387073_62387171_62389055
ES_00042161	chr4	-	5565	24	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	-7302	17673	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	15.9391565264617	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTCTGTGTGCTGTGTA	NA	False	NA	NA	False	AAGAAA	-39	NA	63328893	63267688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_63267709_63278976_63279008_63285416_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111_63316477_63328575
ES_00042162	chr4	-	2218	8	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	26304	-2	4153	2	3prime_fragment	FALSE	canonical	3	30	junction_5	4.59369576880387	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCTGTGCTGTGTAT	NA	False	NA	NA	False	AATAAA	-40	NA	63295287	63285359	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067
ES_00042163	chr4	-	652	2	Genic_Genomic	ENSMUSG00000084345.4	novel	555	1	NA	NA	-26	34821	multi-exon	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGTGAAAATAAGT	NA	False	NA	NA	False	AATGAA	-44	NA	63814362	63778960	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_63778989_63813738
ES_00042164	chr4	-	651	2	Genic_Genomic	ENSMUSG00000084345.4	novel	555	1	NA	NA	-26	34821	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGTGAAAATAAGT	NA	False	NA	NA	False	AATGAA	-44	NA	63814362	63778960	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_63778990_63813740
ES_00042165	chr4	-	201	2	Intergenic	novelGene_2796	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGCACAGAATGTAACAGAA	6549	False	NA	NA	False	NA	NA	NA	68876125	68797110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_68797286_68876099
ES_00042166	chr4	-	450	1	FSM	ENSMUSG00000046341.6	ENSMUST00000120560.2	450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCCCGAGAACTGACTT	NA	False	NA	NA	False	NA	NA	NA	69844316	69843866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_69843900_69844300
ES_00042167	chr4	-	5816	38	NIC	ENSMUSG00000039298.17	novel	11847	37	NA	NA	-107	2	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	42.090739921554	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGCCTCTGTCCTCAC	NA	False	NA	-2	True	AATAAA	-17	NA	70328787	70141257	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70165184_70165212_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
ES_00042168	chr4	-	5795	37	NNC	ENSMUSG00000039298.17	novel	11847	37	NA	NA	-107	2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_17	39.3689810214421	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGCCTCTGTCCTCAC	NA	False	NA	-2	True	AATAAA	-17	NA	70328787	70141257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199766_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
ES_00042169	chr4	-	2238	8	NNC	ENSMUSG00000008305.19	novel	2067	7	NA	NA	-89	43227	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.79237516724	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCAAGCCCTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	72119245	71992151	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_71992178_72075817_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00042171	chr4	-	3242	16	NIC	ENSMUSG00000008305.19	novel	3644	20	NA	NA	39	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_12	75.7282862167984	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	False	NA	81	True	AGTAAA	-18	NA	72119052	72036041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ES_00042174	chr4	-	515	4	FSM	ENSMUSG00000028403.16	ENSMUST00000156055.2	515	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	42.1926797231726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGTTATAATTCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	82777810	82765853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_82765977_82772205_82772353_82775060_82775222_82777726
ES_00042175	chr4	-	8695	19	NIC	ENSMUSG00000038172.15	novel	8831	20	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_12	56.8346095218941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTCTTCTATTTGATG	NA	False	NA	-12	True	AATAAA	-16	NA	83242421	83138536	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ES_00042176	chr4	-	550	4	ISM	ENSMUSG00000028487.19	ENSMUST00000107198.9	3948	7	-27	139017	-8	-3067	5prime_fragment	FALSE	canonical	1	8	junction_1	2.35702260395516	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGAAATCGAGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	84593331	84332482	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_84332586_84464441_84464643_84474015_84474142_84593211
ES_00042177	chr4	-	588	3	FSM	ENSMUSG00000028494.13	ENSMUST00000154999.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	314	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGCCTCTGTTTTATTC	4878	False	NA	NA	False	AATATA	-18	NA	86576920	86566622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86566817_86575350_86575642_86576817
ES_00042178	chr4	-	774	1	FSM	ENSMUSG00000082969.2	ENSMUST00000121575.2	784	1	61	-51	61	51	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGAGAGAGAGCATTTG	NA	False	NA	NA	False	ATTAAA	-7	NA	86736753	86735979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_86736000_86736800
ES_00042179	chr4	-	847	6	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	0	2204	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8273.35633464436	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTATCAGCATGTATAC	NA	False	NA	NA	False	NA	NA	NA	86775582	86770692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_86770732_86772899_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ES_00042180	chr4	-	4659	7	FSM	ENSMUSG00000028497.13	ENSMUST00000151280.8	4680	7	21	0	8	0	multi-exon	TRUE	canonical	2	3	junction_1	2.26691175145591	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGGCTGAGCTTTTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	88357144	88328577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88355696_88355801_88357069
ES_00042181	chr4	-	852	3	FSM	ENSMUSG00000044303.7	ENSMUST00000060501.5	852	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAGCATAGAAAT	NA	False	NA	-3	True	AATAAA	-26	NA	89200429	89192707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_89193012_89194881_89195223_89200222
ES_00042182	chr4	-	3717	6	NIC	ENSMUSG00000008489.19	novel	4191	8	NA	NA	243	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_5	26.6563313304738	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	False	NA	2	True	AATAAA	-20	NA	91259950	91138999	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_91141805_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91259766
ES_00042183	chr4	-	3661	7	NNC	ENSMUSG00000008489.19	novel	3730	7	NA	NA	526	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	41.471543121626	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACTGTGTATCTTTAAA	NA	False	NA	-3	True	AATAAA	-15	NA	91259667	91139004	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_91141808_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91259576
ES_00042184	chr4	-	255	2	Antisense	novelGene_ENSMUSG00000077921.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATACCATGTTGTAGTC	8905	False	NA	NA	False	AATAAA	-31	NA	94578448	94515557	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_94515720_94578355
ES_00042185	chr4	-	481	1	FSM	ENSMUSG00000082683.2	ENSMUST00000118008.2	667	1	44	142	44	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCTTCATGGGTTTTAA	NA	False	NA	NA	False	AATATA	-17	NA	97445263	97444782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_97444800_97445300
ES_00042187	chr4	-	207	1	Intergenic	novelGene_2827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCCAACTCTTAAGACC	NA	False	NA	NA	False	NA	NA	NA	99552549	99552342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_99552300_99552500
ES_00042188	chr4	-	937	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	0	15882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.42779333796	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTTTACTAACGTGT	NA	False	NA	NA	False	NA	NA	NA	101750986	101731334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101731362_101747219_101747741_101747885_101748198_101750909
ES_00042189	chr4	-	1883	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-945	15882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.42779333796	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTTTACTAACGTGT	NA	False	NA	NA	False	NA	NA	NA	101751931	101731334	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_101731363_101747219_101747741_101747885_101748198_101750909
ES_00042191	chr4	-	277	2	FSM	ENSMUSG00000035126.20	ENSMUST00000148673.2	429	2	0	152	0	-152	multi-exon	FALSE	canonical	2	2	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGGATTCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	102944553	102939285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_102939539_102944529
ES_00042192	chr4	-	3253	12	FSM	ENSMUSG00000044254.7	ENSMUST00000049507.6	3521	12	255	13	255	-13	multi-exon	FALSE	canonical	1	3	junction_11	3.44016144153173	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCCGACTCAGAGGCTG	NA	False	NA	NA	False	AATAAA	-20	NA	106321271	106299538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_106300756_106301873_106302056_106303792_106303971_106304326_106304476_106304703_106304878_106306056_106306241_106307236_106307434_106311421_106311564_106311709_106311844_106314061_106314186_106316033_106316226_106320891
ES_00042193	chr4	-	228	1	FSM	ENSMUSG00000082279.2	ENSMUST00000121383.2	1016	1	794	-6	794	6	mono-exon	FALSE	NA	NA	NA	NA	NA	1245	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGGCCTGGCCCCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	107184902	107184674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107184700_107184900
ES_00042194	chr4	-	235	3	Antisense	novelGene_ENSMUSG00000028614.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	478.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	107289235	107222097	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_107222150_107288442_107288572_107289181
ES_00042196	chr4	-	441	1	FSM	ENSMUSG00000084874.5	ENSMUST00000154610.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTCCTTCGGTATTTGT	NA	False	NA	NA	False	GGGGCT	-28	NA	107617662	107617221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_107617200_107617700
ES_00042197	chr4	-	2236	11	ISM	ENSMUSG00000034645.15	ENSMUST00000106690.9	2421	14	-8	5151	-8	-5151	5prime_fragment	FALSE	canonical	1	26	junction_5	16.8110082981361	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTGTTTTTTATTTTT	5535	False	NA	NA	False	NA	NA	NA	108075253	108044281	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
ES_00042198	chr4	-	1194	4	NNC	ENSMUSG00000059816.6	novel	593	3	NA	NA	-572	2359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	24.9977776790036	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTTAATCTTCAAAGG	NA	False	NA	NA	False	NA	NA	NA	108241118	108222614	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_108222633_108224962_108225239_108234543_108234684_108240358
ES_00042200	chr4	-	3799	7	NIC	ENSMUSG00000028546.18	novel	3761	6	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	10.286182749473	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGAGCTTCCCAAATTTT	NA	False	NA	NA	False	AATAAA	-19	NA	110209106	110060934	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_110063857_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ES_00042201	chr4	-	220	1	FSM	ENSMUSG00000083011.2	ENSMUST00000118069.2	1212	1	1059	-67	1059	67	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTATGCACACATGGTG	NA	False	NA	NA	False	AATAAA	-25	NA	112812424	112812204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_112812200_112812400
ES_00042202	chr4	-	729	1	FSM	ENSMUSG00000083011.2	ENSMUST00000118069.2	1212	1	96	387	96	-387	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCGAACAGAGATTAATAA	NA	False	NA	NA	False	NA	NA	NA	112813387	112812658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_112812700_112813400
ES_00042203	chr4	-	1349	1	FSM	ENSMUSG00000082678.2	ENSMUST00000117562.2	1349	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCTTCGGCTGTGCCATA	NA	False	NA	NA	False	NA	NA	NA	112837010	112835661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_112835700_112837000
ES_00042204	chr4	-	4019	5	FSM	ENSMUSG00000028707.16	ENSMUST00000124071.9	4017	5	0	-2	0	2	multi-exon	FALSE	canonical	1	1	junction_3	0.707106781186548	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGATCCATCTTCATTCC	NA	False	NA	NA	False	AATAAA	-21	NA	115797123	115772313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_115775603_115777170_115777514_115777729_115777909_115780845_115781012_115797081
ES_00042205	chr4	-	1947	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	26	12	26	-12	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGATCTCACTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	116024771	116019077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
ES_00042206	chr4	-	6005	28	NIC	ENSMUSG00000003810.14	novel	5445	29	NA	NA	10	0	intron_retention	FALSE	canonical	3	226	junction_1	29.428204233177	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGCCTGTGTTTGCTTC	8497	False	NA	-2	True	AATACA	-16	NA	116321370	116163958	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ES_00042207	chr4	-	5819	29	NIC	ENSMUSG00000003810.14	novel	5445	29	NA	NA	-116	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_26	59.5179080407823	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGCCTGTGTTTGCTTC	8371	False	NA	-2	True	AATACA	-16	NA	116321496	116163958	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_116165535_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248829_116287602_116287746_116292640_116292789_116320932
ES_00042210	chr4	-	565	3	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	74	2106	-44	4	5prime_fragment	TRUE	canonical	3	184	junction_1	0	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCTAGATTTTTTTTT	NA	False	NA	NA	False	AATATA	-43	NA	116565529	116561581	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_116561857_116563077_116563273_116565434
ES_00042213	chr4	-	353	2	FSM	ENSMUSG00000047675.16	ENSMUST00000137423.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	13045	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117011694	117011030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117011185_117011495
ES_00042216	chr4	-	354	2	Intergenic	novelGene_2863	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	90	junction_1	0	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	117058342	117057798	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_117058112_117058301
ES_00042218	chr4	-	1536	11	NNC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	69.5563800093133	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTCCTCACTTCCTCA	NA	False	NA	-32	True	AATAGA	-23	NA	117539400	117531874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539373
ES_00042219	chr4	-	792	1	FSM	ENSMUSG00000084260.2	ENSMUST00000119463.2	582	1	393	-603	393	603	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATCAAATGGGGAAC	NA	False	NA	NA	False	AATAAA	-27	NA	117586103	117585311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117585300_117586100
ES_00042220	chr4	-	4093	13	FSM	ENSMUSG00000028541.15	ENSMUST00000084325.10	4093	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	31.9621086427177	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGTTCTGCACACACTG	NA	False	NA	NA	False	ATTAAA	-18	NA	117740352	117726456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117727026_117727106_117727186_117727302_117727373_117727712_117727768_117728260_117728387_117728943_117729058_117729185_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117740298
ES_00042221	chr4	-	646	4	FSM	ENSMUSG00000033379.14	ENSMUST00000133530.8	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	2536	junction_3	23.6690139681023	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117743091	117741526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000
ES_00042222	chr4	-	935	7	FSM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	972.524449849748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744517	117741529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117744366
ES_00042223	chr4	-	2232	6	NIC	ENSMUSG00000028540.7	novel	2555	6	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	27.9399355761605	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTTTCTCTTTATTC	NA	False	NA	-9	True	AATAAA	-13	NA	117749183	117746105	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748917
ES_00042225	chr4	-	2153	8	NIC	ENSMUSG00000028538.13	novel	2143	11	NA	NA	3676	2	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	28.2004486865448	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTTGTTTTCTCTGAC	3724	False	NA	1	True	AATAAA	-20	NA	117821969	117789348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526
ES_00042226	chr4	-	2527	12	NNC	ENSMUSG00000028538.13	novel	2549	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_11	22.3118394987545	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGTTGTTTTCTCTG	1894	False	NA	-1	True	AATAAA	-18	NA	117992079	117789350	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991600
ES_00042227	chr4	-	8390	58	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	18283	456	-1057	208	3prime_fragment	FALSE	canonical	1	1	junction_33	9.05915717473365	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGAGAAGTGCTGCTAC	742	False	NA	NA	False	ACTAAA	-13	NA	118248187	118220395	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799_118233919_118234860_118234973_118235063_118235170_118235262_118235366_118235444_118235598_118237363_118237494_118238550_118238651_118239780_118239983_118240154_118240227_118240343_118240432_118240507_118240676_118241001_118241188_118241377_118241442_118241668_118241777_118241891_118242034_118242210_118242505_118242608_118242688_118242806_118242900_118243051_118243194_118243940_118244188_118244300_118244417_118244647_118244853_118244939_118245105_118245213_118245338_118245504_118245600_118245740_118245912_118246119_118246234_118246330_118246446_118246569_118246739_118246971_118247067_118247254_118247334_118247678_118247895_118247970
ES_00042228	chr4	-	8320	58	NNC	ENSMUSG00000033253.19	novel	10965	72	NA	NA	-1057	208	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_33	9.28297322383421	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGAGAAGTGCTGCTAC	742	False	NA	NA	False	ACTAAA	-13	NA	118248187	118220395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799_118233919_118234860_118234973_118235063_118235170_118235262_118235366_118235444_118235598_118237363_118237494_118238550_118238651_118239780_118239983_118240154_118240227_118240343_118240432_118240507_118240676_118241001_118241188_118241377_118241442_118241668_118241777_118241891_118242034_118242210_118242505_118242608_118242688_118242806_118242900_118243051_118243194_118243940_118244188_118244300_118244417_118244647_118244853_118244939_118245105_118245213_118245338_118245504_118245600_118245740_118245842_118246119_118246234_118246330_118246446_118246569_118246739_118246971_118247067_118247254_118247334_118247678_118247895_118247970
ES_00042229	chr4	-	1531	2	Genic_Genomic	ENSMUSG00000084133.2	novel	1293	1	NA	NA	-98	47658	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGCAAAGAGACGCTGAT	9237	False	NA	NA	False	NA	NA	NA	118800647	118751598	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr4_-_118751630_118799147
ES_00042230	chr4	-	7063	6	NNC	ENSMUSG00000078584.10	novel	657	6	NA	NA	0	34	intron_retention	TRUE	canonical	0	0	junction_1	151.713414041079	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATGTTTATTCTAGTCT	NA	False	NA	NA	False	NA	NA	NA	119089875	119077004	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_119077513_119077600_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ES_00042231	chr4	-	6983	7	NNC	ENSMUSG00000078584.10	novel	657	6	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_2	165.516028092616	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCTTGTTCCCCGACT	NA	False	NA	NA	False	NA	NA	NA	119089875	119077038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_119077421_119077466_119077513_119077600_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ES_00042232	chr4	-	216	2	Intergenic	novelGene_2868	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTCATCCCTCTCTCC	156	False	NA	NA	False	NA	NA	NA	119189854	119157425	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_119157623_119189835
ES_00042233	chr4	-	1810	9	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	4.28478412525065	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTAGTAATTTCTA	9783	False	NA	NA	False	NA	NA	NA	119272658	119209440	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
ES_00042234	chr4	-	1610	2	FSM	ENSMUSG00000028636.15	ENSMUST00000140641.2	1543	2	-64	-3	-2	3	multi-exon	FALSE	canonical	3	317	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTTTCTGGTTTTTTGTT	5503	False	NA	-1	True	AATAAA	-33	NA	119279619	119275723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_119276491_119278776
ES_00042235	chr4	-	426	1	FSM	ENSMUSG00000049878.14	ENSMUST00000222814.2	2752	1	2295	31	2295	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTAGAAATACATAGTGAG	8759	False	NA	NA	False	NA	NA	NA	121069986	121069560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_121069600_121070000
ES_00042237	chr4	-	1025	8	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	47035	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	376.675467960505	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	123030691	122973872	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_122973906_123020910_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664
ES_00042238	chr4	-	574	1	FSM	ENSMUSG00000082634.2	ENSMUST00000120919.2	573	1	15	-16	15	16	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTATTTGCTTTTTTT	NA	False	NA	NA	False	AAGAAA	-12	NA	123169250	123168676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123168700_123169200
ES_00042239	chr4	-	2093	1	FSM	ENSMUSG00000076436.2	ENSMUST00000102640.2	1760	1	-339	6	-339	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGCCAGTATGTCCTG	NA	False	NA	NA	False	ATTAAA	-8	NA	123217766	123215673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123215700_123217800
ES_00042240	chr4	-	200	2	Intergenic	novelGene_2888	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTCATGGAATTCAGT	NA	False	NA	NA	False	NA	NA	NA	123625411	123572369	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_123572528_123625369
ES_00042241	chr4	-	334	1	FSM	ENSMUSG00000085875.4	ENSMUST00000163208.2	279	1	27	-82	27	82	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCCCAACTCCCACCCGG	NA	False	NA	NA	False	NA	NA	NA	123799274	123798940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_123798900_123799300
ES_00042242	chr4	-	2294	9	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	781	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	488.029968342109	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGATCTTCATCTTATTAT	NA	False	NA	NA	False	ATTAAA	-20	NA	124587327	124571171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_124571893_124571916_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ES_00042243	chr4	-	4008	6	FSM	ENSMUSG00000028907.8	ENSMUST00000153088.2	4008	6	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_1	127.692443002709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587327	124572589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_124572780_124573494_124576117_124576205_124577142_124577545_124577649_124579881_124579944_124587232
ES_00042244	chr4	-	286	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	-57	164	-57	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTCGGGCTACCCTC	NA	False	NA	NA	False	NA	NA	NA	125964109	125963823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_125963800_125964100
ES_00042248	chr4	-	349	1	FSM	ENSMUSG00000081319.2	ENSMUST00000121439.2	301	1	-51	3	-51	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCCGATTTTGTTATGAA	NA	False	NA	NA	False	NA	NA	NA	126478653	126478304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_126478300_126478700
ES_00042250	chr4	-	210	1	FSM	ENSMUSG00000082220.4	ENSMUST00000119616.2	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCTGGGTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	127035281	127035071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_127035100_127035300
ES_00042251	chr4	-	1654	3	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	0	53494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	492	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAGAATAATATGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	127222954	127165533	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_127165565_127219027_127220565_127222868
ES_00042252	chr4	-	1911	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	0	53494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAGAATAATATGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	127224637	127165533	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_127165565_127219027_127220565_127224294
ES_00042253	chr4	-	304	1	FSM	ENSMUSG00000079998.3	ENSMUST00000116114.3	420	1	-11	127	-11	-127	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTGAAGATCAAACCAGAG	NA	False	NA	NA	False	NA	NA	NA	127302602	127302298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_127302300_127302600
ES_00042255	chr4	-	1441	3	FSM	ENSMUSG00000028785.14	ENSMUST00000095807.10	1666	3	220	5	220	1	multi-exon	FALSE	canonical	2	3	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTACTCGGTGGCCAGGGG	NA	False	NA	-5	True	AATAAA	-17	NA	129012540	129005367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129006319_129006467_129006574_129012156
ES_00042256	chr4	-	5119	8	NNC	ENSMUSG00000050390.13	novel	5033	7	NA	NA	-55	9521	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.575681473689	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCTTAGAACTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	129133022	129103849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129103883_129113372_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129132798
ES_00042260	chr4	-	2048	15	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	6083	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	512.792937684184	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGCAAAATAAATAAATAA	8830	False	NA	NA	False	NA	NA	NA	129436484	129403813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_129403846_129409896_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ES_00042263	chr4	-	289	1	FSM	ENSMUSG00000080944.2	ENSMUST00000122147.2	289	1	51	-51	51	51	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGCATGGGCTACCAT	6805	False	NA	NA	False	AATAAA	-27	NA	129655658	129655369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_129655400_129655700
ES_00042264	chr4	-	340	2	Intergenic	novelGene_2930	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATTATTTACTTATTT	NA	False	NA	NA	False	NA	NA	NA	129704691	129673557	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_129673587_129704380
ES_00042265	chr4	-	914	2	FSM	ENSMUSG00000028776.15	ENSMUST00000145000.3	911	2	0	-3	0	1	multi-exon	FALSE	canonical	3	281	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTCTGGGAGTCTTCAA	NA	False	NA	NA	False	AATAAA	-20	NA	130060404	130059393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_130059999_130060095
ES_00042268	chr4	-	529	2	Intergenic	novelGene_2940	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAACTGGAGAAGTCCTAG	NA	False	NA	NA	False	NA	NA	NA	130362488	130359652	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_130360111_130362417
ES_00042269	chr4	-	330	2	Antisense	novelGene_ENSMUSG00000028580.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	130394253	130369339	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_130369627_130394210
ES_00042270	chr4	-	4529	17	FSM	ENSMUSG00000028906.18	ENSMUST00000137846.8	4531	17	0	2	0	-2	multi-exon	FALSE	canonical	3	43	junction_6	32.7182575177836	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGACTGTGAGGATTG	NA	False	NA	NA	False	AATAAA	-19	NA	131731105	131650725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895
ES_00042271	chr4	-	5668	20	NIC	ENSMUSG00000028906.18	novel	5303	21	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	38.5763982786771	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGACTGTGAGGATTG	NA	False	NA	NA	False	AATAAA	-19	NA	131776389	131650725	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
ES_00042272	chr4	-	5134	20	NIC	ENSMUSG00000028906.18	novel	5235	21	NA	NA	-7	6	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	44.2651291882206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGCCTGACTGT	5359	False	NA	NA	False	AATAAA	-11	NA	131802582	131650733	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131691441_131691499_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ES_00042274	chr4	-	604	1	FSM	ENSMUSG00000083757.3	ENSMUST00000229086.2	502	1	-115	13	-115	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAACTCAGAATC	9797	False	NA	NA	False	AATAAA	-27	NA	131947915	131947311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_131947300_131947900
ES_00042275	chr4	-	733	2	FSM	ENSMUSG00000089687.3	ENSMUST00000040411.7	761	2	23	5	23	-5	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAACAGACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132030673	132029512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132029994_132030421
ES_00042276	chr4	-	962	8	FSM	ENSMUSG00000028898.16	ENSMUST00000105962.10	961	8	0	-1	0	1	multi-exon	FALSE	canonical	3	4	junction_3	178.321310549015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTTCTTCAACTGTATT	2365	False	NA	1	True	AATAAA	-18	NA	132056800	132039072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ES_00042279	chr4	-	500	4	NNC	ENSMUSG00000054428.13	novel	539	3	NA	NA	0	48200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3850.34996966365	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAACAAAACAAATA	9305	False	NA	NA	False	NA	NA	NA	132260906	132209665	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132209700_132257874_132258135_132260606_132260699_132260792
ES_00042280	chr4	-	222	3	Antisense	novelGene_ENSMUSG00000028886.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	20	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTCCATCACTGAAGGAA	7908	False	NA	NA	False	NA	NA	NA	132390302	132347448	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_132347477_132365297_132365441_132390251
ES_00042281	chr4	-	390	1	Intergenic	novelGene_2953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCTTTTTTTTTTCGA	8998	False	NA	NA	False	NA	NA	NA	132526433	132526043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_132526000_132526400
ES_00042282	chr4	-	338	1	FSM	ENSMUSG00000088990.3	ENSMUST00000158365.3	165	1	13	-186	13	186	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTCTTTTTCCTTAG	1651	False	NA	NA	False	NA	NA	NA	132565845	132565507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132565500_132565800
ES_00042283	chr4	-	662	5	FSM	ENSMUSG00000028879.5	ENSMUST00000137109.2	662	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_4	22.1697992773954	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTAGCATGATGCTAACC	NA	False	NA	NA	False	TATAAA	-31	NA	132590571	132584356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469
ES_00042284	chr4	-	1422	6	NNC	ENSMUSG00000028857.17	novel	1484	6	NA	NA	3	1818	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.52578857618	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGCCAAAAACAAAACAACA	NA	False	NA	NA	False	NA	NA	NA	133005100	132991537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_132991564_132993355_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
ES_00042286	chr4	-	1180	7	NNC	ENSMUSG00000003038.16	novel	676	7	NA	NA	0	42438	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1026.87319351298	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTCTGAAAAGAAGATTT	NA	False	NA	NA	False	NA	NA	NA	133695202	133649610	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_133649646_133692058_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ES_00042288	chr4	-	2021	2	FSM	ENSMUSG00000028840.11	ENSMUST00000129183.2	2020	2	0	-1	0	1	multi-exon	FALSE	canonical	3	614	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCAGTGTGCATGTATT	7718	False	NA	-10	True	NA	NA	NA	133972853	133970616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_133972399_133972614
ES_00042290	chr4	-	991	2	Intergenic	novelGene_2964	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	2	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTGCATTTTATTC	NA	False	NA	NA	False	AAAAAG	-2	NA	134163763	134161018	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_134161794_134163547
ES_00042291	chr4	-	6514	10	NNC	ENSMUSG00000037295.8	novel	6549	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	21.6184649013606	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	134495335	134468864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_134472149_134472183_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
ES_00042292	chr4	-	1616	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105858.8	1616	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	8.87059749960509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	7519	False	NA	0	True	ATTAAA	-17	NA	135112966	135096886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135112840
ES_00042293	chr4	-	1818	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	-17	0	14	0	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5712	False	NA	0	True	ATTAAA	-17	NA	135125518	135096886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
ES_00042294	chr4	-	962	1	FSM	ENSMUSG00000081136.2	ENSMUST00000120372.2	468	1	-198	-296	-198	296	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGACAACCAACTCCACTA	65	False	NA	NA	False	NA	NA	NA	135131165	135130203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135130200_135131200
ES_00042295	chr4	-	753	4	FSM	ENSMUSG00000028803.19	ENSMUST00000145020.8	814	4	61	0	61	0	multi-exon	FALSE	canonical	1	1	junction_3	28.6123516451666	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGTGCCGTCTCCGTG	3903	False	NA	NA	False	NA	NA	NA	135222219	135206870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135207019_135209782_135209852_135218243_135218594_135222033
ES_00042296	chr4	-	317	2	FSM	ENSMUSG00000059291.16	ENSMUST00000133613.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135777837	135777257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_135777328_135777590
ES_00042298	chr4	-	3653	16	FSM	ENSMUSG00000028664.15	ENSMUST00000105846.9	3653	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	7.94816540676736	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAAACAGGCTAGATCTT	NA	False	NA	NA	False	NA	NA	NA	136563154	136381956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399822_136400573_136400683_136402678_136402842_136411230_136411356_136421045_136421382_136423309_136423466_136498266_136498952_136501890_136501956_136563080
ES_00042300	chr4	-	269	1	Intergenic	novelGene_2978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCAGGACATCCCTGAA	NA	False	NA	NA	False	AAAAAG	-1	NA	137728821	137728552	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_137728600_137728800
ES_00042302	chr4	-	2877	2	FSM	ENSMUSG00000043621.14	ENSMUST00000105811.9	2926	2	54	-5	10	5	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGAAGGCGTCCAA	7403	False	NA	NA	False	AATAAA	-18	NA	138452522	138445843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_138448690_138452491
ES_00042303	chr4	-	5878	7	NIC	ENSMUSG00000041161.9	novel	1668	8	NA	NA	-7	4316	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	8.6874750199481	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGGTCAGCTTGTTGAC	NA	False	NA	-4	True	AATAAA	-19	NA	138641263	138618373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_138623226_138624026_138624209_138624867_138624965_138625317_138625450_138629162_138629286_138636792_138636942_138640920
ES_00042304	chr4	-	904	1	FSM	ENSMUSG00000080708.2	ENSMUST00000117963.2	881	1	16	-39	16	39	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTGCCACTCCCTCCCT	2091	False	NA	NA	False	NA	NA	NA	139073475	139072571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_139072600_139073500
ES_00042306	chr4	-	4607	28	NIC	ENSMUSG00000040964.17	novel	4382	27	NA	NA	-100	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_8	53.9528321154549	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140376167	140241795	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279106_140279232_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
ES_00042307	chr4	-	1077	5	NIC	ENSMUSG00000040935.13	novel	2333	16	NA	NA	775	-5	intron_retention	FALSE	canonical	1	1	junction_4	8.5841423566947	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATGTTTTTACGCCGC	NA	False	NA	NA	False	AATAAA	-14	NA	140459579	140454670	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222_140458590_140459552
ES_00042308	chr4	-	1435	3	NNC	ENSMUSG00000025328.10	novel	3310	15	NA	NA	14886	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	15.5	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTGGGTGTTGGCCTT	3386	False	NA	-2	True	AATAAA	-12	NA	140516447	140512677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_140513946_140516147_140516274_140516406
ES_00042309	chr4	-	6257	35	FSM	ENSMUSG00000040860.17	ENSMUST00000168157.8	6244	35	2	-15	2	12	multi-exon	TRUE	canonical	2	5	junction_32	18.8695210201375	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAATGCTTCCTCTATCT	NA	False	NA	NA	False	NA	NA	NA	140785508	140743935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140778351_140778507_140780260_140780403_140785372
ES_00042311	chr4	-	2115	13	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	3253	-2	-124	2	3prime_fragment	FALSE	canonical	1	1	junction_10	15.3539263888934	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTCACCCATCTTCTC	NA	False	NA	3	True	AATAAA	-22	NA	141122262	141111918	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387_141117499_141117652_141117723_141118656_141118831_141119083_141119169_141119835_141119938_141120051_141120137_141121723
ES_00042312	chr4	-	1728	14	ISM	ENSMUSG00000006216.11	ENSMUST00000006378.9	2370	20	4339	-1	4286	1	3prime_fragment	TRUE	canonical	1	1	junction_11	44.957442071732	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTCCCCTCTCCTCCCT	817	False	NA	-3	True	AATAAA	-19	NA	141138986	141131662	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616_141135728_141135886_141135957_141136636_141136811_141137052_141137138_141137826_141137929_141138004_141138090_141138693_141138820_141138900
ES_00042315	chr4	-	502	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-132	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	45.7019328548221	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	403	False	NA	-2	True	AATAAA	-18	NA	141546645	141542272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546536
ES_00042316	chr4	-	807	6	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-2899	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	47.5663746779172	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	NA	False	NA	-2	True	AATAAA	-18	NA	141549412	141542272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549264
ES_00042317	chr4	-	1853	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-401	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9799	False	NA	-6	True	AATAAA	-18	NA	141812016	141758302	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_141759406_141764715_141765245_141811795
ES_00042318	chr4	-	4154	12	NIC	ENSMUSG00000040606.15	novel	4898	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	82.9995519255057	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCTTTCTTGTTGGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	141881897	141829700	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_141832266_141834122_141834238_141835856_141836024_141836587_141836690_141839418_141839651_141844395_141844515_141845385_141845592_141868983_141869108_141870604_141870656_141874333_141874460_141878156_141878347_141881740
ES_00042320	chr4	-	1805	3	Intergenic	novelGene_2998	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTCTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	143715104	143710575	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_-_143710653_143710712_143712141_143714804
ES_00042322	chr4	-	1753	3	FSM	ENSMUSG00000078509.2	ENSMUST00000105762.2	1753	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	7.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGGCACACGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	143720939	143717688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_143718582_143719503_143720077_143720652
ES_00042323	chr4	-	2118	1	FSM	ENSMUSG00000095213.3	ENSMUST00000238297.2	2422	1	303	1	-21	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATCTGGCTGCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	144179908	144177790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_144177800_144179900
ES_00042325	chr4	-	8840	49	NIC	ENSMUSG00000020220.17	novel	10176	52	NA	NA	6135	136	combination_of_known_splicesites	FALSE	canonical	2	4	junction_30	10.0809010496196	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCTGTTGTGAAGGTT	NA	False	NA	0	True	AATACA	-19	NA	144875921	144701359	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405_144801642_144802279_144802404_144807870_144808047_144808250_144808382_144811861_144812005_144813273_144813401_144813694_144813887_144814760_144815009_144818431_144818643_144818774_144818926_144821393_144821442_144822755_144822892_144824580_144824734_144826534_144826638_144832368_144832492_144833499_144833641_144835074_144835165_144837401_144837612_144841276_144841352_144842002_144842214_144844118_144844275_144847821_144847956_144849013_144849277_144852979_144853193_144854506_144854620_144854814_144854987_144858169_144858381_144861007_144861231_144865133_144865317_144867812_144867994_144869741_144869869_144871360_144871452_144874886
ES_00042326	chr4	-	8842	49	NNC	ENSMUSG00000020220.17	novel	15665	68	NA	NA	6135	136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_42	10.322217643672	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCTGTTGTGAAGGTT	NA	False	NA	0	True	AATACA	-19	NA	144875921	144701359	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405_144801642_144802279_144802404_144807870_144808047_144808250_144808382_144811861_144812005_144813273_144813401_144813694_144813887_144814760_144815009_144818431_144818643_144818774_144818926_144821393_144821442_144822755_144822892_144824580_144824734_144826534_144826641_144832368_144832492_144833499_144833641_144835074_144835165_144837401_144837612_144841276_144841352_144842002_144842214_144844118_144844275_144847821_144847956_144849013_144849277_144852979_144853193_144854506_144854620_144854814_144854985_144858168_144858381_144861007_144861231_144865133_144865317_144867812_144867994_144869741_144869869_144871360_144871452_144874886
ES_00042327	chr4	-	858	2	Antisense	novelGene_ENSMUSG00000082352.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATTATAATTATTGAT	NA	False	NA	NA	False	NA	NA	NA	145302504	145282277	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr4_-_145282463_145301831
ES_00042328	chr4	-	518	1	FSM	ENSMUSG00000083454.2	ENSMUST00000117838.2	404	1	-43	-71	-43	71	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGAGTGGGTGGGTATA	NA	False	NA	NA	False	NA	NA	NA	145303905	145303387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_145303400_145303900
ES_00042332	chr4	-	2946	6	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.011185910489	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146913241_146913577_146914284_146976159_146977116_146978205_146978333_146982168_146982273_146993882
ES_00042337	chr4	-	1675	4	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	0	-2398	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	102.537797908869	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGCCTGAATGTATGCA	NA	False	NA	NA	False	AATAAA	-36	NA	146994047	146979260	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_146980562_146982168_146982273_146991966_146992072_146993882
ES_00042346	chr4	-	1214	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-46	-1770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.911926369325	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTCAATCAAGGAATCCAC	9477	False	NA	NA	False	AATACA	-40	NA	147894291	147840425	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147889674_147889780_147891546_147891641_147893775
ES_00042352	chr4	-	1941	6	FSM	ENSMUSG00000055401.15	ENSMUST00000105706.8	1938	6	0	-3	0	3	multi-exon	FALSE	canonical	3	25	junction_5	308.087000699478	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTCATCCTGTTTGGTT	NA	False	NA	57	True	NA	NA	NA	148236365	148230169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148235544
ES_00042358	chr4	-	1313	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	0	-9	0	0	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGATTCATCACCTGTC	NA	False	NA	-2	True	AATAAA	-26	NA	148711215	148701172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ES_00042361	chr4	-	2326	3	Fusion	ENSMUSG00000028971.5_ENSMUSG00000073705.11	novel	677	2	NA	NA	-1271	-157	multi-exon	FALSE	canonical	2	5	junction_1	8.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGCTTTCTTCTTATGT	1686	False	NA	-4	True	AATAAA	-15	NA	149212491	149209647	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr4_-_149209931_149210312_149211603_149211738
ES_00042362	chr4	-	1093	2	FSM	ENSMUSG00000073705.11	ENSMUST00000132672.2	686	2	-100	-307	-100	-42	multi-exon	FALSE	canonical	3	396	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCTAGCAGGTCTATAG	NA	False	NA	NA	False	AATGAA	-45	NA	149215013	149212696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr4_-_149213386_149214609
ES_00042380	chr4	-	3656	21	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_20	86.4360312601174	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	7430	False	NA	-5	True	TATAAA	-13	NA	155753645	155739138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030_155753188_155753271
ES_00042384	chr4	+	1367	1	Intergenic	novelGene_2686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGACAATCTTGGCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	8121065	8122432	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_8121100_8122400
ES_00042385	chr4	+	219	1	Intergenic	novelGene_2693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCCTATTTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	10483849	10484068	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_10483800_10484100
ES_00042386	chr4	+	331	1	Intergenic	novelGene_2717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCCCTACTTAAAATTCAAC	NA	False	NA	NA	False	NA	NA	NA	19155999	19156330	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_19156000_19156300
ES_00042387	chr4	+	379	1	Intergenic	novelGene_2721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATCAGACCTCA	NA	False	NA	NA	False	AATAAA	-16	NA	23230163	23230542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_23230200_23230500
ES_00042388	chr4	+	819	1	Intergenic	novelGene_2739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGCAGAAATCAAAGATGG	NA	False	NA	NA	False	NA	NA	NA	37432262	37433081	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_37432300_37433100
ES_00042391	chr4	+	264	1	Intergenic	novelGene_2755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAACTAAAAGCCGCACT	NA	False	NA	NA	False	NA	NA	NA	41877447	41877711	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41877400_41877700
ES_00042392	chr4	+	476	1	Intergenic	novelGene_2758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAGTGTACCAGCTCGA	NA	False	NA	NA	False	NA	NA	NA	41878402	41878878	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_41878400_41878900
ES_00042393	chr4	+	212	1	Intergenic	novelGene_2760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAGTGTACCAGCTCGA	NA	False	NA	NA	False	NA	NA	NA	42227907	42228119	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_42227900_42228100
ES_00042394	chr4	+	206	1	Intergenic	novelGene_2763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAGTGGAAAGGTAGAAT	NA	False	NA	NA	False	AAAAAG	-2	NA	45871580	45871786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_45871600_45871800
ES_00042395	chr4	+	229	1	Intergenic	novelGene_2766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTTACGTGCCCCCT	NA	False	NA	NA	False	NA	NA	NA	46570454	46570683	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_46570500_46570700
ES_00042396	chr4	+	281	1	Intergenic	novelGene_2783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACCTAGGAAAGTTCC	NA	False	NA	NA	False	NA	NA	NA	55306255	55306536	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_55306300_55306500
ES_00042397	chr4	+	226	1	Intergenic	novelGene_2788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTTTCAAACAGCAAT	NA	False	NA	NA	False	NA	NA	NA	61884293	61884519	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_61884300_61884500
ES_00042398	chr4	+	219	1	Intergenic	novelGene_2791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCCCCCACTAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	62432750	62432969	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_62432800_62433000
ES_00042399	chr4	+	934	1	Intergenic	novelGene_2799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCAGGGGGTCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	73105004	73105938	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_73105000_73105900
ES_00042400	chr4	+	1631	1	Intergenic	novelGene_2803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAGTAGAAAAAGCTATTAA	NA	False	NA	NA	False	NA	NA	NA	77494843	77496474	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_77494800_77496500
ES_00042401	chr4	+	213	1	Intergenic	novelGene_2805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTCCCTTTCTATGTG	NA	False	NA	NA	False	NA	NA	NA	79100365	79100578	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_79100400_79100600
ES_00042402	chr4	+	202	1	Intergenic	novelGene_2808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTATTCTTGTTCCAGGG	NA	False	NA	NA	False	NA	NA	NA	83434363	83434565	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_83434400_83434600
ES_00042403	chr4	+	205	1	Intergenic	novelGene_2812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTTGGCCTTTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	88885433	88885638	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_88885400_88885600
ES_00042404	chr4	+	219	1	Intergenic	novelGene_2819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGATTAGCATTTATAG	NA	False	NA	NA	False	NA	NA	NA	98679810	98680029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_98679800_98680000
ES_00042405	chr4	+	204	1	Intergenic	novelGene_2821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGAAGGTTTTGAAAGCT	NA	False	NA	NA	False	NA	NA	NA	98826585	98826789	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_98826600_98826800
ES_00042406	chr4	+	269	1	Intergenic	novelGene_2825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCACGCCTTTAATCCCA	NA	False	NA	NA	False	TATAAA	-26	NA	99481120	99481389	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_99481100_99481400
ES_00042407	chr4	+	242	1	Intergenic	novelGene_2837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTCTAGCCAGAAACAGT	NA	False	NA	NA	False	NA	NA	NA	108084933	108085175	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108084900_108085200
ES_00042408	chr4	+	202	1	Intergenic	novelGene_2842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATATAAGCAACAGAAACC	NA	False	NA	NA	False	NA	NA	NA	108502381	108502583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_108502400_108502600
ES_00042409	chr4	+	214	1	Intergenic	novelGene_2851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTACATCCCAATCACT	NA	False	NA	NA	False	NA	NA	NA	115912337	115912551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_115912300_115912600
ES_00042411	chr4	+	202	1	Intergenic	novelGene_2859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGAAATACAGAGAGACA	NA	False	NA	NA	False	NA	NA	NA	116783491	116783693	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116783500_116783700
ES_00042412	chr4	+	222	1	Intergenic	novelGene_2860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGACGTCTTTCACTTC	NA	False	NA	NA	False	NA	NA	NA	116818512	116818734	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116818500_116818700
ES_00042413	chr4	+	202	1	Intergenic	novelGene_2861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGAACTCTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	116871134	116871336	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_116871100_116871300
ES_00042414	chr4	+	201	1	Intergenic	novelGene_2864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAACGAAAGAAAAAAAGG	9752	False	NA	NA	False	NA	NA	NA	117595057	117595258	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_117595100_117595300
ES_00042415	chr4	+	576	1	Intergenic	novelGene_2877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	122235114	122235690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122235100_122235700
ES_00042416	chr4	+	525	1	Intergenic	novelGene_2880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCACCACCACTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	122952529	122953054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_122952500_122953100
ES_00042417	chr4	+	218	1	Intergenic	novelGene_2894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGTATTAAGGCAGAA	9606	False	NA	NA	False	NA	NA	NA	124761234	124761452	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_124761200_124761500
ES_00042418	chr4	+	481	1	Intergenic	novelGene_2902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAACAATGCTGGGCA	1511	False	NA	NA	False	NA	NA	NA	126118667	126119148	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126118700_126119100
ES_00042419	chr4	+	206	1	Intergenic	novelGene_2904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAACTTTTAAGTGGTA	4682	False	NA	NA	False	NA	NA	NA	126318819	126319025	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126318800_126319000
ES_00042420	chr4	+	224	1	Intergenic	novelGene_2905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGTTCTATACTAGGTA	NA	False	NA	NA	False	NA	NA	NA	126339335	126339559	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126339300_126339600
ES_00042421	chr4	+	1205	1	Intergenic	novelGene_2908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGAAGGCACCAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	126807192	126808397	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126807200_126808400
ES_00042422	chr4	+	595	1	Intergenic	novelGene_2911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATATAGTAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	126878466	126879061	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126878500_126879100
ES_00042423	chr4	+	250	1	Intergenic	novelGene_2915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCCTCCAGTTTTTTT	2037	False	NA	NA	False	NA	NA	NA	126970468	126970718	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_126970500_126970700
ES_00042424	chr4	+	221	1	Intergenic	novelGene_2928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACATATTTCTTAAAGAA	63	False	NA	NA	False	NA	NA	NA	129312639	129312860	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_129312600_129312900
ES_00042425	chr4	+	259	1	Intergenic	novelGene_2938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGGGCGGTTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	130293630	130293889	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_130293600_130293900
ES_00042426	chr4	+	203	1	Intergenic	novelGene_2944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTAGCCGCTTTGTTTTTGC	788	False	NA	NA	False	AATATA	-3	NA	130906040	130906243	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_130906000_130906200
ES_00042428	chr4	+	201	1	Intergenic	novelGene_2957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTGTTTTTTAAAGAT	NA	False	NA	NA	False	NA	NA	NA	133033431	133033632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133033400_133033600
ES_00042429	chr4	+	210	1	Intergenic	novelGene_2962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCAACTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133529405	133529615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133529400_133529600
ES_00042430	chr4	+	215	1	Intergenic	novelGene_2963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGACTGACTAGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	133724897	133725112	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_133724900_133725100
ES_00042432	chr4	+	208	1	Intergenic	novelGene_2966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCAGATTCTTGATTCC	337	False	NA	NA	False	NA	NA	NA	134268676	134268884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_134268700_134268900
ES_00042433	chr4	+	357	1	Intergenic	novelGene_2970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTATTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	137090684	137091041	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137090700_137091000
ES_00042434	chr4	+	892	1	Intergenic	novelGene_2974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137117452	137118344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137117500_137118300
ES_00042435	chr4	+	212	1	Intergenic	novelGene_2976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTGAGGTGAAGGAAGC	NA	False	NA	NA	False	AAAAAG	-4	NA	137637209	137637421	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_137637200_137637400
ES_00042436	chr4	+	211	1	Intergenic	novelGene_2983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGGATGCTGAAGACAA	NA	False	NA	NA	False	NA	NA	NA	138702060	138702271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_138702100_138702300
ES_00042437	chr4	+	1322	1	Intergenic	novelGene_2984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGTTCAAGGTTGGG	NA	False	NA	NA	False	NA	NA	NA	139019326	139020648	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_139019300_139020600
ES_00042438	chr4	+	356	1	Intergenic	novelGene_2993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCTCGAAAATCCAAAAAAA	4103	False	NA	5	True	NA	NA	NA	141288914	141289270	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_141288900_141289300
ES_00042439	chr4	+	445	1	Intergenic	novelGene_2995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGGCACTGGGATTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	142944438	142944883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_142944400_142944900
ES_00042440	chr4	+	204	1	Intergenic	novelGene_3001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAATGTTGTGTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	145140220	145140424	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_145140200_145140400
ES_00042441	chr4	+	266	1	Intergenic	novelGene_3004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTTTATGCCAGGTGC	NA	False	NA	NA	False	NA	NA	NA	145319008	145319274	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr4_+_145319000_145319300
ES_00042452	chr5	+	558	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	-47	-73	-47	73	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACCATGTTATTATTAA	NA	False	NA	NA	False	NA	NA	NA	3286383	3286941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3286400_3286900
ES_00042454	chr5	+	2353	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	-254	-654	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTTTCTTTGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	3391230	3571571	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ES_00042455	chr5	+	720	2	FSM	ENSMUSG00000040274.12	ENSMUST00000197385.2	697	2	-23	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTGTCACGGACGGA	NA	False	NA	NA	False	NA	NA	NA	3393892	3440693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3394600_3440680
ES_00042456	chr5	+	11525	8	FSM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	33.2627143099493	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGATTTCAGACTCCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	3393892	3581008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3393972_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ES_00042458	chr5	+	2058	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	-69	-498	-64	0	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	False	NA	19	True	AGTAAA	-15	NA	3593768	3620238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ES_00042460	chr5	+	2912	10	FSM	ENSMUSG00000058503.12	ENSMUST00000196059.5	1961	10	-20	-931	-9	506	multi-exon	FALSE	canonical	0	0	junction_9	63.1977105383095	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATTGCCCGGCTACCCTC	NA	False	NA	NA	False	NA	NA	NA	3593823	3620744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ES_00042461	chr5	+	2001	11	NNC	ENSMUSG00000058503.12	novel	1491	11	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	2	38	junction_10	49.5661174594097	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTCTTTGTGTATCA	NA	False	NA	20	True	AGTAAA	-16	NA	3593830	3620239	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615755_3618986
ES_00042462	chr5	+	1830	1	FSM	ENSMUSG00000058503.12	ENSMUST00000200354.2	2196	1	213	153	213	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTTTATAGTAAGT	NA	False	NA	NA	False	GGGGCT	-34	NA	3617048	3618878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3617000_3618900
ES_00042463	chr5	+	908	1	FSM	ENSMUSG00000104891.2	ENSMUST00000198718.2	1263	1	434	-79	434	79	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGAAGCACTTGCCATGC	NA	False	NA	NA	False	ACTAAA	-29	NA	3635545	3636453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3635500_3636500
ES_00042464	chr5	+	4555	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	3646065	3687232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
ES_00042467	chr5	+	3367	2	FSM	ENSMUSG00000005907.15	ENSMUST00000199213.2	487	2	91	-2971	91	2700	multi-exon	FALSE	canonical	3	90	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGTATTTAAAAATCCAA	NA	False	NA	NA	False	NA	NA	NA	3685705	3689932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3685911_3686770
ES_00042468	chr5	+	2977	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7984	False	NA	10	True	AATAAA	-23	NA	3853182	3891359	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ES_00042470	chr5	+	2935	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	-5	0	-5	0	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7980	False	NA	10	True	AATAAA	-23	NA	3853178	3891359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ES_00042471	chr5	+	2863	17	NIC	ENSMUSG00000000600.16	novel	571	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	71.6846392192916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	9041	False	NA	10	True	AATAAA	-23	NA	3854239	3891359	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_3854427_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ES_00042472	chr5	+	6029	16	ISM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	2882	-3000	773	56	3prime_fragment	FALSE	canonical	0	0	junction_15	56.1963225368588	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTACGGGGTTTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	3856065	3894359	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ES_00042475	chr5	+	2010	8	FSM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.1145527311522	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAAAATGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	3978177	4010989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111
ES_00042476	chr5	+	12071	49	NIC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	0	-1106	intron_retention	TRUE	canonical	3	19	junction_3	16.1909048328238	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGTTGAACCTTCTTGA	NA	False	NA	22	True	AATAAA	-24	NA	3978273	4130204	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ES_00042477	chr5	+	13123	48	FSM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	16.8799451617757	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAAACAGTCTTCAAA	NA	False	NA	NA	False	AATAAA	-39	NA	3978273	4131310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ES_00042478	chr5	+	1368	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	4242366	4247651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_4242419_4246335
ES_00042479	chr5	+	1537	1	FSM	ENSMUSG00000095159.3	ENSMUST00000179460.3	1336	1	-49	-152	-49	152	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATAAGTACTATCTATGA	NA	False	NA	NA	False	ATTAAA	-23	NA	7229315	7230852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_7229300_7230900
ES_00042481	chr5	+	2349	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	6	-104	6	104	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATGAGTATTTATTCAT	NA	False	NA	88	True	NA	NA	NA	8106532	8119255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ES_00042482	chr5	+	2842	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	-15	-43	-15	43	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGGCCTTCTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	8472834	8504840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ES_00042483	chr5	+	3948	25	Fusion	ENSMUSG00000028970.10_ENSMUSG00000040584.9	novel	4997	28	NA	NA	14730	-1	multi-exon	TRUE	canonical	2	3	junction_1	70.4399739533992	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATCTGTTATGTATATG	NA	False	NA	9	True	ATTAAA	-16	NA	8724806	8916314	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_8724843_8733383_8733436_8735220_8735413_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00042484	chr5	+	4510	15	NNC	ENSMUSG00000040584.9	novel	2705	10	NA	NA	-9108	-51	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	59.4603280536266	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCATAATTGTAAATAAGA	NA	False	NA	NA	False	AATAAA	-22	NA	8760710	8798519	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_8762145_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ES_00042485	chr5	+	2533	10	FSM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	172	0	142	0	multi-exon	FALSE	canonical	3	48	junction_3	64.6271356836017	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAGATAATGGTTATGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	8769990	8798570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ES_00042486	chr5	+	2327	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13469	50	0	-50	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCATAATTGTAAATAAGAG	NA	False	NA	NA	False	AATAAA	-23	NA	8783287	8798520	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ES_00042487	chr5	+	757	5	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-39	55427	0	-2763	5prime_fragment	FALSE	canonical	3	110	junction_4	17.1955662890176	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAAACATTTTAAT	NA	False	NA	NA	False	AATAAA	-28	NA	8848146	8860888	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557
ES_00042488	chr5	+	3064	22	FSM	ENSMUSG00000028970.10	ENSMUST00000199955.5	3181	22	0	117	0	-117	multi-exon	FALSE	canonical	3	9	junction_4	30.8459709346698	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCTTTGAAGCAATGAAAT	NA	False	NA	NA	False	GATAAA	-25	NA	8848146	8899704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511
ES_00042489	chr5	+	4352	28	FSM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	0	-46	0	46	multi-exon	FALSE	canonical	3	66	junction_6	57.377196351684	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAATTTCAGCCTTCAG	NA	False	NA	56	True	NA	NA	NA	8848185	8916361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00042490	chr5	+	1847	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50895	0	-252	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5132	False	NA	10	True	ATTAAA	-17	NA	8899080	8916315	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00042491	chr5	+	1433	6	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-274	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	91.0173609812985	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7164	False	NA	10	True	ATTAAA	-17	NA	8901112	8916315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_8901271_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00042492	chr5	+	1071	1	FSM	ENSMUSG00000106664.2	ENSMUST00000199413.2	988	1	1	-84	1	84	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAACACTATTACGCTTG	5790	False	NA	NA	False	NA	NA	NA	8962971	8964042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8963000_8964000
ES_00042493	chr5	+	458	1	FSM	ENSMUSG00000078183.4	ENSMUST00000120584.2	195	1	10	-273	10	273	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	9021957	9022415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_9022000_9022400
ES_00042494	chr5	+	1040	5	FSM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	62.4019230472908	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTTTTTCCTCCTTT	NA	False	NA	10	True	AATAAA	-21	NA	9150746	9169045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_9150860_9151216_9151396_9166479_9166531_9167458_9167564_9168453
ES_00042495	chr5	+	1835	1	FSM	ENSMUSG00000079659.6	ENSMUST00000200542.2	5254	1	-408	3827	-408	-921	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCCTCTTCTCTTACAT	NA	False	NA	NA	False	NA	NA	NA	9205324	9207159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_9205300_9207200
ES_00042496	chr5	+	375	4	FSM	ENSMUSG00000056004.17	ENSMUST00000142202.2	745	4	370	0	370	0	multi-exon	FALSE	canonical	2	7	junction_1	0.942809041582063	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCTGCACTACCAAAGA	NA	False	NA	NA	False	NA	NA	NA	9467984	9472330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_9468072_9470616_9470723_9471504_9471658_9472301
ES_00042497	chr5	+	633	1	FSM	ENSMUSG00000073226.10	ENSMUST00000101606.4	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGATGGGCTTTCCTATCT	NA	False	NA	NA	False	NA	NA	NA	10286795	10287428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_10286800_10287400
ES_00042498	chr5	+	344	1	FSM	ENSMUSG00000105536.2	ENSMUST00000197271.2	1044	1	690	10	690	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGTCCTTGCTGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	10609009	10609353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_10609000_10609400
ES_00042499	chr5	+	420	1	FSM	ENSMUSG00000104601.2	ENSMUST00000198005.2	687	1	38	229	38	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAGAGAGCAGAAGGTCT	NA	False	NA	NA	False	NA	NA	NA	11476457	11476877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_11476500_11476900
ES_00042500	chr5	+	401	1	FSM	ENSMUSG00000105171.2	ENSMUST00000198323.2	1119	1	417	301	417	-301	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTTCTTAGTGTCCAA	NA	False	NA	NA	False	GGGGCT	-18	NA	11978005	11978406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_11978000_11978400
ES_00042501	chr5	+	202	2	Antisense	novelGene_ENSMUSG00000105237.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTATTTCTGTTCTAT	NA	False	NA	NA	False	NA	NA	NA	12694176	12759234	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_12694199_12759054
ES_00042502	chr5	+	307	4	FSM	ENSMUSG00000040118.16	ENSMUST00000200294.2	720	4	163	250	163	-250	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATTTCTTATCTCCTAG	NA	False	NA	NA	False	NA	NA	NA	16531311	16545807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_16531382_16532970_16533043_16538761_16538824_16545704
ES_00042503	chr5	+	1147	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	21087188	21091868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21087654_21091186
ES_00042504	chr5	+	3917	1	FSM	ENSMUSG00000101013.2	ENSMUST00000190567.2	5410	1	-51	1544	-51	-1544	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGGAGCCAAATGTACGAA	NA	False	NA	NA	False	TTTAAA	-15	NA	21155935	21159852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21155900_21159900
ES_00042505	chr5	+	201	2	Antisense	novelGene_ENSMUSG00000028771.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	346	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGAGTTTGCTTGGTCA	9600	False	NA	NA	False	NA	NA	NA	21218227	21232988	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_21218282_21232841
ES_00042506	chr5	+	1333	1	FSM	ENSMUSG00000106158.2	ENSMUST00000196295.2	1333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAAGAGCAGTCAGTG	NA	False	NA	NA	False	NA	NA	NA	21236749	21238082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21236700_21238100
ES_00042507	chr5	+	208	1	Intergenic	novelGene_3077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTCATTTTCAGCTTGC	7439	False	NA	NA	False	NA	NA	NA	21277334	21277542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_21277300_21277500
ES_00042509	chr5	+	3050	8	FSM	ENSMUSG00000047221.6	ENSMUST00000056045.5	3027	8	-23	0	-23	0	multi-exon	FALSE	canonical	1	21	junction_1	12.2873753029984	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTGTCACTGTCCCA	NA	False	NA	91	True	AATAAA	-13	NA	21629932	21687122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21630575_21634721_21634832_21638688_21638782_21643697_21643837_21652313_21652356_21660779_21660876_21664156_21664292_21685329
ES_00042510	chr5	+	996	3	FSM	ENSMUSG00000047221.6	ENSMUST00000153301.2	1590	3	0	594	0	-594	multi-exon	FALSE	canonical	1	21	junction_1	18	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAGTAATACCACAAGTA	NA	False	NA	NA	False	ATTAAA	-8	NA	21629998	21638998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21630575_21634721_21634832_21638688
ES_00042511	chr5	+	546	1	FSM	ENSMUSG00000106135.2	ENSMUST00000197353.2	808	1	238	24	238	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGGCTGATTAGACGGAT	NA	False	NA	NA	False	NA	NA	NA	21803975	21804521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21804000_21804500
ES_00042512	chr5	+	2249	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	-28	0	-28	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCAATTTGTTTTAT	NA	False	NA	6	True	AGTAAA	-26	NA	21850848	21867692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ES_00042513	chr5	+	1609	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	6	0	6	0	multi-exon	FALSE	canonical	3	306	junction_5	33.8430815184827	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942144	21962150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ES_00042514	chr5	+	1790	13	FSM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	-5	0	-5	0	multi-exon	FALSE	canonical	3	8	junction_1	502.901056095752	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21990275	22008785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ES_00042515	chr5	+	1409	12	NNC	ENSMUSG00000028932.9	novel	1775	13	NA	NA	1399	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_10	474.994371432507	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTCAGTGCTTC	NA	False	NA	11	True	AATAAA	-7	NA	21991679	22008775	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008172_22008363_22008461_22008544
ES_00042517	chr5	+	769	1	FSM	ENSMUSG00000105156.2	ENSMUST00000198791.2	296	1	-296	-177	-296	177	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGATTAAAAAATTCAGAT	NA	False	NA	NA	False	NA	NA	NA	22768658	22769427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_22768700_22769400
ES_00042519	chr5	+	2833	16	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	28	10520	20	-2493	5prime_fragment	FALSE	canonical	3	18	junction_10	3.53396220818629	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGATTTCTCTAAGGT	NA	False	NA	NA	False	ATTAAA	-25	NA	23639466	23698713	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196
ES_00042520	chr5	+	3376	14	FSM	ENSMUSG00000028999.16	ENSMUST00000124680.8	3363	14	-13	0	-5	0	multi-exon	FALSE	canonical	2	56	junction_5	10.8529711253887	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAGTATTTCTTTGTGT	NA	False	NA	3	True	NA	NA	NA	23992703	24025366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
ES_00042521	chr5	+	3314	15	FSM	ENSMUSG00000028999.16	ENSMUST00000030852.13	3298	15	-17	1	-17	0	multi-exon	TRUE	canonical	2	56	junction_5	10.4591040315534	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAGTATTTCTTTGTGT	NA	False	NA	3	True	NA	NA	NA	23992691	24025366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
ES_00042524	chr5	+	1691	3	ISM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	1182	1	1178	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	13.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTCGTCAGGTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	24056776	24060035	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_24057154_24057715_24057759_24058764
ES_00042525	chr5	+	3107	12	FSM	ENSMUSG00000028986.13	ENSMUST00000200116.5	3086	12	-21	0	-20	0	multi-exon	FALSE	canonical	1	1	junction_8	21.6954883530201	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAGATTTGCTTTGTTT	NA	False	NA	5	True	ATTAAA	-12	NA	24305582	24365782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24356716_24356839_24361887_24362090_24363536_24363635_24364444
ES_00042531	chr5	+	958	2	Genic_Genomic	ENSMUSG00000081071.2	novel	216	1	NA	NA	-109	42728	multi-exon	FALSE	canonical	0	0	junction_1	0	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACTAAACAAAAGAACCT	9729	False	NA	NA	False	NA	NA	NA	24461710	24504763	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_24462630_24504724
ES_00042533	chr5	+	952	2	FSM	ENSMUSG00000028973.19	ENSMUST00000136414.2	929	2	-23	0	-11	0	multi-exon	FALSE	canonical	3	205	junction_1	0	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACGGTGTTCAGGTATA	NA	False	NA	NA	False	NA	NA	NA	24599382	24605663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24599582_24604910
ES_00042535	chr5	+	2037	4	FSM	ENSMUSG00000028973.19	ENSMUST00000136459.2	2340	4	303	0	-290	0	multi-exon	FALSE	canonical	3	195	junction_1	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGAGGCTGTAGCTTAGT	NA	False	NA	30	True	AATAAA	-20	NA	24611115	24614944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24611253_24611397_24612454_24613565_24613817_24614351
ES_00042536	chr5	+	4178	23	FSM	ENSMUSG00000028962.15	ENSMUST00000080067.13	4179	23	-1	2	-1	1	multi-exon	FALSE	canonical	3	23	junction_2	8.13471288485391	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGGCTTGGTCTTGTGTCT	NA	False	NA	8	True	AGTAAA	-17	NA	24630228	24645946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ES_00042537	chr5	+	3867	22	FSM	ENSMUSG00000028962.15	ENSMUST00000115049.9	3924	22	57	0	2	0	multi-exon	FALSE	canonical	0	0	junction_1	10.8604840305893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGGCTTGGTCTTGTGTC	NA	False	NA	7	True	AGTAAA	-16	NA	24633262	24645945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24633272_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ES_00042538	chr5	+	3273	16	NIC	ENSMUSG00000023353.15	novel	3207	18	NA	NA	-385	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_11	24.1655402036316	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTTCTCCTTTGGTG	NA	False	NA	11	True	AATAAA	-17	NA	24656789	24707035	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
ES_00042539	chr5	+	3207	18	FSM	ENSMUSG00000023353.15	ENSMUST00000024123.9	3207	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_12	48.4543090880899	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGGTGCCTCAGTGCC	NA	False	NA	21	True	AATAAA	-27	NA	24657174	24707045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24701730_24701902_24703067_24703206_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
ES_00042541	chr5	+	2758	9	FSM	ENSMUSG00000023353.15	ENSMUST00000199856.2	2685	9	-66	-7	-66	7	multi-exon	FALSE	canonical	2	13	junction_1	66.5934493775476	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTCCTTCCCGACCCGCC	NA	False	NA	22	True	AATAAA	-22	NA	24679145	24688189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24680181_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24687263
ES_00042544	chr5	+	936	1	FSM	ENSMUSG00000038165.9	ENSMUST00000182745.2	1051	1	248	-133	248	7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTCAGTGTTGTTTCT	9935	False	NA	NA	False	AATACA	-27	NA	24852929	24853865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24852900_24853900
ES_00042545	chr5	+	3546	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_1	111.175284472544	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890529	24915374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ES_00042548	chr5	+	2552	12	FSM	ENSMUSG00000038072.15	ENSMUST00000045737.14	2552	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	26.0711042984152	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACTCTTCTATCTCT	NA	False	NA	13	True	AATAAA	-27	NA	25427879	25470916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_25428030_25452451_25452785_25453833_25453958_25455084_25455252_25457021_25457148_25459904_25460155_25462390_25462509_25463809_25463963_25466932_25467152_25468377_25468483_25469959_25470098_25470247
ES_00042552	chr5	+	2063	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	-32	0	-32	0	multi-exon	FALSE	canonical	3	28	junction_1	35.2080956599473	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964962	26055686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ES_00042553	chr5	+	1712	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_4	20.0016528242663	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTTTATATTTCCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	25965023	26055340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ES_00042554	chr5	+	1881	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	37.7095478625772	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25965056	26055686	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ES_00042561	chr5	+	9510	19	FSM	ENSMUSG00000048271.15	ENSMUST00000059644.13	9510	19	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_15	26.3991792801721	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTGAAGAGTTTATT	NA	False	NA	4	True	AATAAA	-16	NA	28522174	28624237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
ES_00042562	chr5	+	3955	7	FSM	ENSMUSG00000048271.15	ENSMUST00000030920.6	3955	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	25.4994553318737	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTATTTTGTATGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	28522199	28560577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469
ES_00042563	chr5	+	6683	19	NIC	ENSMUSG00000048271.15	novel	9510	19	NA	NA	-254	0	combination_of_known_junctions	TRUE	canonical	3	35	junction_15	30.0263772928626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCCTCATCTGTGTATT	NA	False	NA	7	True	CATAAA	-21	NA	28521864	28621103	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613252_28613460_28615568_28615758_28618284_28618374_28618565
ES_00042565	chr5	+	557	4	FSM	ENSMUSG00000029130.13	ENSMUST00000160888.8	562	4	5	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	12.8149218578274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAGGGGACTCCATTCAG	NA	False	NA	NA	False	NA	NA	NA	29400994	29408133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29401111_29402923_29403019_29403571_29403837_29408052
ES_00042569	chr5	+	8679	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	16	524	16	-524	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTGTCCTTCTGACA	2975	False	NA	NA	False	NA	NA	NA	29639677	29662317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ES_00042571	chr5	+	5052	23	NNC	ENSMUSG00000039000.9	novel	5048	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_10	103.714175334374	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGTCAGTTGTGTTCT	NA	False	NA	38	True	ATTAAA	-38	NA	29774239	29881090	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_29774579_29792272_29792327_29794885_29794961_29795807_29795955_29802066_29802183_29803856_29804015_29805638_29805793_29806129_29806351_29807193_29807346_29811904_29812097_29819905_29819993_29824225_29824384_29824552_29824786_29836189_29836295_29837747_29837836_29840628_29840727_29842635_29842769_29851407_29851656_29863207_29863421_29868460_29868650_29868773_29868841_29872911_29873043_29879396
ES_00042572	chr5	+	2909	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	9	0	9	0	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGTGTGTATGTGC	4303	False	NA	33	True	AATAAA	-44	NA	29940694	29991476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
ES_00042573	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4546	False	NA	42	True	AATAAA	-42	NA	29940937	29972101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ES_00042574	chr5	+	1024	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4601	False	NA	13	True	AATAAA	-21	NA	29940992	29962967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
ES_00042576	chr5	+	2052	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	-23	4	-23	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	False	NA	6	True	AATAAA	-21	NA	30360222	30389587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ES_00042577	chr5	+	2087	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	-39	0	-15	0	multi-exon	FALSE	canonical	0	0	junction_1	146.097988426337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	False	NA	6	True	AATAAA	-21	NA	30360230	30389587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ES_00042580	chr5	+	1083	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	-52	0	-52	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAGCGCTTGAATCT	9134	False	NA	9	True	AATATA	-14	NA	30824188	30831722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ES_00042582	chr5	+	1022	7	FSM	ENSMUSG00000029177.10	ENSMUST00000134846.8	1007	7	-15	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	786.091474038204	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTGCATCTTTTACT	9186	False	NA	11	True	NA	NA	NA	30824240	30831659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30824458_30826342_30826397_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ES_00042584	chr5	+	3806	1	FSM	ENSMUSG00000029177.10	ENSMUST00000197962.2	3806	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAAATCAA	9249	False	NA	NA	False	NA	NA	NA	30824303	30828109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30824300_30828100
ES_00042591	chr5	+	3949	16	FSM	ENSMUSG00000038828.14	ENSMUST00000202951.4	3947	16	-2	0	0	0	multi-exon	TRUE	canonical	3	358	junction_2	23.0143916326768	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTATGTGTTTTGCTAGCT	NA	False	NA	NA	False	TTTAAA	-13	NA	31026974	31035708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ES_00042592	chr5	+	2390	11	FSM	ENSMUSG00000029165.18	ENSMUST00000201918.4	2352	11	-38	0	-4	0	multi-exon	TRUE	canonical	2	6	junction_1	11.9733036376766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGCAGAAGACGCTGCAG	NA	False	NA	NA	False	AATAAA	-8	NA	31046274	31053428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109
ES_00042599	chr5	+	1374	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	-22	0	-22	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107387	31112435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ES_00042600	chr5	+	864	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200942.2	840	7	-24	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	101.141402666432	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGCTGCCGTACCTGT	908	False	NA	7	True	AATAAA	-20	NA	31205978	31211962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31206101_31206805_31206828_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ES_00042614	chr5	+	2025	16	FSM	ENSMUSG00000029146.15	ENSMUST00000200730.4	2019	16	-1	-5	-1	0	multi-exon	TRUE	canonical	2	10	junction_3	132.900564332888	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGTTCCCTCTCACT	NA	False	NA	20	True	ATTAAA	-20	NA	31350636	31356243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ES_00042615	chr5	+	2203	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398207	31408910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ES_00042618	chr5	+	1046	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	-19	0	-19	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409015	31410541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ES_00042619	chr5	+	1098	2	FSM	ENSMUSG00000029149.15	ENSMUST00000201393.2	1088	2	-10	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGCAGGAACTGACAGA	NA	False	NA	NA	False	NA	NA	NA	31409049	31410235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31409448_31409535
ES_00042620	chr5	+	919	7	FSM	ENSMUSG00000029149.15	ENSMUST00000054829.13	904	7	-15	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	21.1344899788631	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410441
ES_00042621	chr5	+	908	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	-19	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	11.9361728465293	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409049	31410541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ES_00042624	chr5	+	3303	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	-4	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7142	False	NA	16	True	AATAAA	-17	NA	31609774	31639098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ES_00042625	chr5	+	3264	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	92.8146300728261	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7116	False	NA	16	True	AATAAA	-17	NA	31609748	31639098	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_31609922_31622795_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ES_00042626	chr5	+	3265	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGTCTCTGGTCCTCCT	7116	False	NA	11	True	AATAAA	-12	NA	31609748	31639093	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ES_00042627	chr5	+	3890	13	NNC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	1	0	intron_retention	FALSE	canonical	2	2	junction_1	95.9837949285654	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7230	False	NA	16	True	AATAAA	-17	NA	31609862	31639098	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_31610656_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ES_00042629	chr5	+	2901	1	FSM	ENSMUSG00000029138.5	ENSMUST00000202441.2	2737	1	-220	56	-220	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGGTCATTGTTATA	NA	False	NA	NA	False	NA	NA	NA	31642863	31645764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31642900_31645800
ES_00042636	chr5	+	2746	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	-252	5	-235	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684103	31711381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
ES_00042637	chr5	+	2656	13	NIC	ENSMUSG00000029141.17	novel	2424	13	NA	NA	-235	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_10	26.846270173382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684103	31711381	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705957_31706026_31708056_31708127_31711082
ES_00042638	chr5	+	2659	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	-235	0	-235	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684103	31711381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
ES_00042639	chr5	+	2710	14	NIC	ENSMUSG00000029141.17	novel	2499	14	NA	NA	-202	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	26.2556840845094	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684136	31711381	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
ES_00042641	chr5	+	685	4	FSM	ENSMUSG00000029141.17	ENSMUST00000202299.4	761	4	76	0	76	0	multi-exon	FALSE	canonical	3	47	junction_1	30.9443945740671	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTGAGGTGATGATCAT	1824	False	NA	7	True	AGTAAA	-17	NA	31701013	31711382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31701258_31705954_31706026_31708056_31708127_31711082
ES_00042644	chr5	+	471	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	7	0	7	0	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771289	31779988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
ES_00042646	chr5	+	642	4	FSM	ENSMUSG00000106918.4	ENSMUST00000201483.4	638	4	-4	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	972.261624598372	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATACTCTTGTCTCTTA	NA	False	NA	12	True	AATAAA	-15	NA	31771356	31779981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31771612_31771946_31771966_31773724_31773832_31779720
ES_00042647	chr5	+	2741	2	FSM	ENSMUSG00000106918.4	ENSMUST00000201620.2	2741	2	0	0	0	0	multi-exon	FALSE	canonical	3	2333	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTCTCTTAGAGGT	NA	False	NA	17	True	AATAAA	-20	NA	31771356	31779986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31773832_31779720
ES_00042648	chr5	+	1888	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5552	False	NA	35	True	AATAAA	-31	NA	31855027	32242306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ES_00042649	chr5	+	761	6	FSM	ENSMUSG00000052139.19	ENSMUST00000201202.4	715	6	-44	-2	0	2	multi-exon	FALSE	canonical	3	657	junction_3	63.9606128801155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGATCGTTTAGCTCA	5838	False	NA	NA	False	AATAAA	-16	NA	31855313	31988562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428
ES_00042653	chr5	+	2657	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	0	0	0	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	32768514	32842921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
ES_00042654	chr5	+	1303	1	FSM	ENSMUSG00000014932.16	ENSMUST00000200779.2	2749	1	854	592	717	-592	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATTTTTAAAAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	32769395	32770698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_32769400_32770700
ES_00042660	chr5	+	8224	43	FSM	ENSMUSG00000037426.19	ENSMUST00000087897.11	8216	43	-9	1	-1	-1	multi-exon	FALSE	canonical	2	8	junction_1	47.1065516768565	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTTTCTGAGCGCTT	2004	False	NA	NA	False	AATAAA	-25	NA	33021055	33151579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33021166_33021353_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094864_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33148085_33148169_33148282
ES_00042662	chr5	+	5648	44	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	1	13	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	36.4349068030642	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCTCTCCCTCCC	2053	False	NA	20	True	AATAAA	-21	NA	33021104	33149018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021166_33021353_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ES_00042664	chr5	+	5363	42	NIC	ENSMUSG00000037426.19	novel	5195	41	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_32	32.7037247258759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCCCTCC	2447	False	NA	7	True	AATAAA	-8	NA	33021498	33149005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ES_00042667	chr5	+	1382	1	FSM	ENSMUSG00000105929.2	ENSMUST00000196072.2	1249	1	-215	82	-215	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTCTTTACTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	33141698	33143080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33141700_33143100
ES_00042670	chr5	+	475	1	FSM	ENSMUSG00000093885.3	ENSMUST00000137013.2	333	1	-66	-76	-66	76	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCATGCCTTGAATCACT	NA	False	NA	NA	False	AAAAAG	-21	NA	33233315	33233790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33233300_33233800
ES_00042675	chr5	+	2679	15	FSM	ENSMUSG00000037313.17	ENSMUST00000074849.13	2669	15	-10	0	-10	0	multi-exon	FALSE	canonical	3	29	junction_6	250.331341649912	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815461	33829545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ES_00042676	chr5	+	2187	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815929	33829542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ES_00042677	chr5	+	2168	16	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	0	38756	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	249.472634883178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTGGGCTGGTGAGATG	NA	False	NA	NA	False	NA	NA	NA	33815977	33875095	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325_33829538_33875061
ES_00042682	chr5	+	7218	23	NIC	ENSMUSG00000057406.17	novel	7142	23	NA	NA	-308	-229	combination_of_known_junctions	FALSE	canonical	3	39	junction_8	54.8431459815812	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTGTCTAAACTTCATA	NA	False	NA	5	True	ATTAAA	-18	NA	33977760	34055081	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ES_00042683	chr5	+	8006	11	NIC	ENSMUSG00000057406.17	novel	7142	23	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	74.4366173331379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGACCCAGGACTGGTT	NA	False	NA	NA	False	AATAAA	-15	NA	33978068	34034620	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34028750
ES_00042684	chr5	+	7463	22	NIC	ENSMUSG00000057406.17	novel	7153	22	NA	NA	-309	76	combination_of_known_junctions	TRUE	canonical	3	39	junction_7	69.2052388144502	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCAGGTAGCCTTA	NA	False	NA	97	True	NA	NA	NA	33977759	34055395	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33978222_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ES_00042685	chr5	+	7142	23	FSM	ENSMUSG00000057406.17	ENSMUST00000075812.11	7142	23	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	30.2485912519455	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTTACACTTATTTAA	NA	False	NA	12	True	ATTAAA	-15	NA	33978068	34055310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ES_00042687	chr5	+	4633	21	FSM	ENSMUSG00000057406.17	ENSMUST00000058096.14	4633	21	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	54.3759137854253	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTCCACTTTGAGTG	3698	False	NA	NA	False	NA	NA	NA	34000484	34053056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ES_00042689	chr5	+	495	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114383.8	511	4	15	1	15	-1	multi-exon	FALSE	canonical	3	25	junction_1	4.98887651569859	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGTGTCCTGTATTTT	NA	False	NA	4	True	AATAAA	-12	NA	34140828	34142352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34140984_34141100_34141241_34141395_34141485_34142241
ES_00042690	chr5	+	420	4	FSM	ENSMUSG00000070858.13	ENSMUST00000094869.12	477	4	52	5	15	-1	multi-exon	FALSE	canonical	3	9	junction_1	12.3648246606609	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGTGTCCTGTATTTT	NA	False	NA	4	True	AATAAA	-12	NA	34140828	34142352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34140909_34141100_34141241_34141395_34141485_34142241
ES_00042692	chr5	+	2967	8	FSM	ENSMUSG00000029110.14	ENSMUST00000030992.13	2895	8	-84	12	7	0	multi-exon	FALSE	canonical	0	0	junction_4	1003.41470052242	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGAACTAAGTATCTTT	NA	False	NA	13	True	AATAAA	-3	NA	34493639	34510768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ES_00042693	chr5	+	3049	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	-18	15	-18	0	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGAACTAAGTATCTTT	NA	False	NA	13	True	AATAAA	-3	NA	34493614	34510768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ES_00042694	chr5	+	501	5	FSM	ENSMUSG00000029110.14	ENSMUST00000181991.8	491	5	-10	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	818.928873590375	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCGAAGCACCAAGGATGA	NA	False	NA	NA	False	NA	NA	NA	34493723	34507377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34493886_34504118_34504246_34506007_34506088_34506893_34506904_34507255
ES_00042697	chr5	+	2904	7	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	1293	junction_4	355.934919144872	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493761	34510780	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34507255_34507416_34508133_34508183_34508574
ES_00042700	chr5	+	5531	21	NNC	ENSMUSG00000037210.17	novel	5536	21	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	17.252536045463	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTCTGGTTGCTTTC	1451	False	NA	16	True	AATACA	-15	NA	34527284	34643800	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_34527772_34567924_34568168_34577341_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
ES_00042701	chr5	+	5497	21	NNC	ENSMUSG00000037210.17	novel	5536	21	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	21.7981650603898	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTCTGGTTGCTTTC	1473	False	NA	16	True	AATACA	-15	NA	34527306	34643800	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_34527772_34567924_34568168_34577344_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600931_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
ES_00042704	chr5	+	2275	2	FSM	ENSMUSG00000037210.17	ENSMUST00000181379.2	2283	2	0	8	0	-8	multi-exon	FALSE	canonical	3	96	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTGGAAAGATCCTCTT	NA	False	NA	NA	False	NA	NA	NA	34623472	34635025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34623792_34633069
ES_00042707	chr5	+	412	2	FSM	ENSMUSG00000029106.15	ENSMUST00000145986.2	412	2	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCACTCAGCACATCAG	NA	False	NA	NA	False	NA	NA	NA	34731147	34758969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34731258_34758667
ES_00042708	chr5	+	3909	17	NIC	ENSMUSG00000029106.15	novel	4007	16	NA	NA	-26	2	combination_of_known_junctions	FALSE	canonical	3	43	junction_15	204.145322013511	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	14	True	AATAAA	-15	NA	34731180	34789640	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34778175_34778263_34782622_34782780_34785758_34785858_34786479_34786517_34787813
ES_00042709	chr5	+	3771	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	-10	0	0	0	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCAACTTTGCAT	NA	False	NA	26	True	AATAAA	-27	NA	34731206	34789652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
ES_00042711	chr5	+	2774	1	FSM	ENSMUSG00000029106.15	ENSMUST00000201368.2	2774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATCAACTCTCTA	NA	False	NA	NA	False	NA	NA	NA	34753683	34756457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34753700_34756500
ES_00042715	chr5	+	438	4	FSM	ENSMUSG00000029098.18	ENSMUST00000156125.8	414	4	-24	0	3	0	multi-exon	FALSE	canonical	3	17	junction_2	26.0426999794995	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTTTGAGTATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	35740397	35746068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35740479_35741219_35741316_35745502_35745658_35745962
ES_00042719	chr5	+	3518	18	NIC	ENSMUSG00000029095.18	novel	1995	22	NA	NA	-21	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	27.0314439484412	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAACTTGCGAAAGGACAA	1536	False	NA	NA	False	AATAAA	-12	NA	35915246	36042312	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36032176_36032258_36040649
ES_00042724	chr5	+	3517	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	11	0	11	0	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCTTAAGCACAGCTT	NA	False	NA	NA	False	AATAAA	-33	NA	36622352	36631424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
ES_00042732	chr5	+	4055	20	NNC	ENSMUSG00000050248.12	novel	4091	20	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_15	8.17163528730315	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAAGAGTGGACCTCAT	8869	False	NA	3	True	CATAAA	-19	NA	37495869	37582399	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028_37544484_37549336_37549542_37550423_37550541_37567577_37567806_37573079_37573292_37574748_37574837_37576467_37576671_37579181_37579284_37581752
ES_00042736	chr5	+	457	4	FSM	ENSMUSG00000029125.15	ENSMUST00000202412.4	457	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	43.1354455948547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGAACGCTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	38196625	38273484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_38196844_38262221_38262338_38264169_38264237_38273428
ES_00042737	chr5	+	888	7	FSM	ENSMUSG00000067367.10	ENSMUST00000130721.8	873	7	-15	0	-3	0	multi-exon	FALSE	canonical	3	182	junction_2	913.07374656523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGGCAGAAAAACAGGAAGA	NA	False	NA	38	True	NA	NA	NA	38377810	38388047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
ES_00042740	chr5	+	562	6	FSM	ENSMUSG00000067367.10	ENSMUST00000202506.2	554	6	-8	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	852.944171678311	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTAAAGTTCCATCTGCAA	NA	False	NA	-46	True	NA	NA	NA	38377863	38387963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_38377980_38382061_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
ES_00042748	chr5	+	723	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	0	3	0	0	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCCCTTTTTATACTAT	NA	False	NA	8	True	NA	NA	NA	38417727	38425248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
ES_00042751	chr5	+	2546	1	FSM	ENSMUSG00000082938.2	ENSMUST00000118681.2	990	1	-305	-1251	-305	1251	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAAAATGTCACA	NA	False	NA	NA	False	AATAAA	-25	NA	40485475	40488021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_40485500_40488000
ES_00042761	chr5	+	2267	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	False	NA	35	True	AATAAA	-34	NA	45650715	45670033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ES_00042763	chr5	+	742	3	FSM	ENSMUSG00000015804.15	ENSMUST00000118833.3	734	3	-8	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	958.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTTAGACTGTTAGAGT	7398	False	NA	61	True	NA	NA	NA	45677636	45682979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_45677827_45679777_45679845_45682494
ES_00042766	chr5	+	2084	14	FSM	ENSMUSG00000015880.14	ENSMUST00000198274.2	2440	14	356	0	356	0	multi-exon	FALSE	canonical	3	453	junction_7	45.647219401112	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTTCAGACTCCTTAT	NA	False	NA	13	True	GATAAA	-43	NA	45835612	45857415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
ES_00042769	chr5	+	8446	37	NIC	ENSMUSG00000031558.16	novel	7758	38	NA	NA	-28	656	combination_of_known_junctions	TRUE	canonical	3	92	junction_15	20.6287548022501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACACAGATATATACACTA	NA	False	NA	NA	False	NA	NA	NA	48140451	48463509	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48378308_48378333_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
ES_00042770	chr5	+	9959	36	FSM	ENSMUSG00000031558.16	ENSMUST00000173107.8	9960	36	0	1	0	-1	multi-exon	FALSE	canonical	3	71	junction_14	20.9676913758442	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATATTGCCCTGTGGGCAA	NA	False	NA	NA	False	NA	NA	NA	48140479	48465074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
ES_00042774	chr5	+	1422	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGTTCTACATATATG	NA	False	NA	14	True	ATTAAA	-22	NA	48529774	48546188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ES_00042777	chr5	+	299	1	FSM	ENSMUSG00000083477.3	ENSMUST00000120352.3	1111	1	856	-44	856	44	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGCCATGCCCGTGGGGA	NA	False	NA	NA	False	NA	NA	NA	49710355	49710654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_49710400_49710700
ES_00042783	chr5	+	5728	12	FSM	ENSMUSG00000029179.15	ENSMUST00000031077.13	5743	12	15	0	15	0	multi-exon	FALSE	canonical	3	82	junction_6	13.7197450763007	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTGTGCTCATTCCATA	NA	False	NA	NA	False	ATTAAA	-20	NA	52940410	52980913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
ES_00042788	chr5	+	937	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	-15	0	-15	0	multi-exon	FALSE	canonical	3	318	junction_1	5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3392	False	NA	13	True	ATTAAA	-14	NA	53424464	53435882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53424701_53434484_53434542_53435238
ES_00042789	chr5	+	931	4	FSM	ENSMUSG00000061461.12	ENSMUST00000204465.2	931	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	153.686549689801	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3446	False	NA	13	True	ATTAAA	-14	NA	53424518	53435882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53424701_53425364_53425413_53434484_53434542_53435238
ES_00042792	chr5	+	5252	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGTAGATGTCTTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	53713175	53814700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ES_00042794	chr5	+	5514	11	FSM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	-59	4	-59	0	multi-exon	FALSE	canonical	3	36	junction_1	139.803576492163	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGTAGATGTCTTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	53747496	53814700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ES_00042795	chr5	+	5440	11	FSM	ENSMUSG00000039191.13	ENSMUST00000113865.5	5440	11	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	104.823470654239	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747812	53814704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53748067_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ES_00042803	chr5	+	719	2	Genic_Genomic	ENSMUSG00000051116.7	novel	499	1	NA	NA	-179	100	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATCCAAGACAACCCTGA	NA	False	NA	NA	False	AATAAA	-29	NA	57765731	57766509	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_57766230_57766288
ES_00042804	chr5	+	787	1	FSM	ENSMUSG00000051116.7	ENSMUST00000153583.3	499	1	-188	-100	-188	100	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATCCAAGACAACCCTGA	NA	False	NA	NA	False	AATAAA	-29	NA	57765722	57766509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_57765700_57766500
ES_00042808	chr5	+	4908	19	FSM	ENSMUSG00000029174.19	ENSMUST00000119756.6	4760	19	-149	1	-149	-1	multi-exon	FALSE	canonical	3	216	junction_12	24.8002513925928	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCGTGTTGTCTGTTT	8367	False	NA	9	True	AATAAA	-19	NA	64387592	64508828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_64387874_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
ES_00042809	chr5	+	4927	20	NNC	ENSMUSG00000029174.19	novel	4760	19	NA	NA	-94	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	77.9609960012501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTTCGTGTTGTCT	8422	False	NA	5	True	AATAAA	-15	NA	64387647	64508824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_64387874_64391534_64391613_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
ES_00042816	chr5	+	3160	11	FSM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	-11	0	-11	0	multi-exon	FALSE	canonical	3	37	junction_10	19.4393929946385	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTTCTGGTTAATATAT	NA	False	NA	NA	False	TATAAA	-36	NA	65264870	65325449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65313397_65313585_65316126_65316352_65318384_65318548_65320132_65320346_65321873_65322046_65324313
ES_00042817	chr5	+	1280	6	NNC	ENSMUSG00000054920.13	novel	3149	11	NA	NA	34	-3856	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	25.9121593079388	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTATTAGGTGTTGGAAA	NA	False	NA	110	True	AGTAAA	-10	NA	65264915	65307141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65306880
ES_00042820	chr5	+	4399	37	FSM	ENSMUSG00000037890.14	ENSMUST00000041892.13	4401	37	-4	6	-2	0	multi-exon	FALSE	canonical	3	17	junction_26	8.39311887467611	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAACATTTTCCTGGATT	8548	False	NA	NA	False	AATAAA	-17	NA	65357036	65417752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446_65415572_65417456
ES_00042823	chr5	+	3613	4	NIC	ENSMUSG00000029195.11	novel	3540	5	NA	NA	23470	1168	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	56.6058497173413	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTGTTACTATGGATT	NA	False	NA	NA	False	NA	NA	NA	65529220	65542518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_65529554_65533022_65533292_65536270_65537415_65540651
ES_00042825	chr5	+	1668	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6886	False	NA	48	True	AAAAAG	-11	NA	65548839	65566550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ES_00042826	chr5	+	2758	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	-25	263	18	-263	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATGTGTGTTATCTTA	6904	False	NA	NA	False	TTTAAA	-24	NA	65548857	65567773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ES_00042828	chr5	+	4697	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202679.4	4682	6	-15	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	338.408628731597	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATTTTCCCCATTAT	NA	False	NA	7	True	AATAAA	-15	NA	65694618	65756272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65694890_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ES_00042830	chr5	+	1544	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	-15	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694603	65753098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ES_00042831	chr5	+	1464	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	-15	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694618	65753098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ES_00042835	chr5	+	9690	20	NIC	ENSMUSG00000037795.15	novel	9055	20	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_4	25.0437843732546	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGTGTGAAGAAATCCTT	NA	False	NA	18	True	AATAAA	-16	NA	65920861	65987451	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_65921589_65928729_65928785_65932927_65933007_65941652_65941720_65943448_65943705_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ES_00042837	chr5	+	8924	18	FSM	ENSMUSG00000037795.15	ENSMUST00000087264.4	5308	18	-150	-3466	-9	8	multi-exon	FALSE	canonical	3	26	junction_3	21.723490387184	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAATCCTTTGTTTGAT	NA	False	NA	26	True	AATAAA	-24	NA	65921312	65987459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ES_00042839	chr5	+	997	10	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	377	junction_9	49.0464632318739	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66833584	66844572	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844324_66844347
ES_00042840	chr5	+	980	7	FSM	ENSMUSG00000029223.13	ENSMUST00000176015.5	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_2	35.4479273802511	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66834234	66844572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ES_00042846	chr5	+	6164	7	FSM	ENSMUSG00000037720.17	ENSMUST00000161369.3	6164	7	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_4	35.264476932649	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTTAGAAATGCTATG	NA	False	NA	NA	False	AATAAA	-18	NA	67418147	67448804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ES_00042852	chr5	+	475	1	FSM	ENSMUSG00000043484.4	ENSMUST00000063197.4	592	1	163	-46	163	46	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTATCATGGCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	69618657	69619132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_69618700_69619100
ES_00042856	chr5	+	1769	15	FSM	ENSMUSG00000029208.17	ENSMUST00000031113.13	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_8	41.9435967237247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGTTCTCTGTTCCTT	NA	False	NA	3	True	AATAAA	-14	NA	69714330	69729074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
ES_00042857	chr5	+	6321	4	FSM	ENSMUSG00000029208.17	ENSMUST00000125660.3	6321	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	10.6144555520604	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTCTAGTTGTAATTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	69724066	69733316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_69725841_69726571_69726692_69728103_69728141_69728926
ES_00042860	chr5	+	5920	24	NIC	ENSMUSG00000046808.18	novel	6052	23	NA	NA	0	0	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_23	25.1562978093101	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTCACTGGAAACTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	72360671	72456104	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270_72454965_72455082
ES_00042862	chr5	+	260	1	FSM	ENSMUSG00000105865.3	ENSMUST00000197039.3	259	1	53	-54	53	54	mono-exon	FALSE	NA	NA	NA	NA	NA	424	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACCTTTTAGGAACCCT	NA	False	NA	NA	False	NA	NA	NA	72729569	72729829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_72729600_72729800
ES_00042863	chr5	+	4840	8	FSM	ENSMUSG00000036087.19	ENSMUST00000144843.8	4833	8	-7	0	-7	0	multi-exon	FALSE	canonical	3	204	junction_4	22.378925946761	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATCTTCCAAGTGTTT	NA	False	NA	14	True	AATAAA	-33	NA	73071639	73136172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73131873_73132190_73133339
ES_00042865	chr5	+	3408	7	FSM	ENSMUSG00000029152.14	ENSMUST00000166823.5	3354	7	-54	0	-45	0	multi-exon	FALSE	canonical	3	746	junction_1	115.10683443364	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGTTGCTTGAAAGATT	NA	False	NA	16	True	AATAAA	-27	NA	73450081	73466708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
ES_00042866	chr5	+	3483	8	FSM	ENSMUSG00000029152.14	ENSMUST00000202250.4	800	8	-68	-2615	-45	30	multi-exon	FALSE	canonical	3	159	junction_1	366.22843323003	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAGCTTTAAATTAATA	NA	False	NA	46	True	NA	NA	NA	73450081	73466738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
ES_00042867	chr5	+	1523	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450134	73471412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ES_00042868	chr5	+	1621	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450081	73471412	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ES_00042869	chr5	+	3273	1	FSM	ENSMUSG00000107331.2	ENSMUST00000202887.2	1197	1	-567	-1509	-567	1509	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73468139	73471412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73468100_73471400
ES_00042872	chr5	+	4107	11	FSM	ENSMUSG00000051674.16	ENSMUST00000063882.12	4116	11	9	0	9	0	multi-exon	FALSE	canonical	3	110	junction_1	17.7721692542019	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	NA	False	NA	15	True	AATAAA	-26	NA	73648384	73718133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
ES_00042874	chr5	+	4082	11	NIC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-8224	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	34.4034881952397	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	8118	False	NA	15	True	AATAAA	-26	NA	73659986	73718133	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_73660112_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
ES_00042875	chr5	+	4122	12	NNC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-8185	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	55.4682546392734	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	8157	False	NA	15	True	AATAAA	-26	NA	73660025	73718133	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_73660112_73668228_73668300_73668469_73668510_73677087_73677167_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
ES_00042877	chr5	+	1049	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	-12	-1	-6	0	multi-exon	FALSE	canonical	3	72	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253731	74254998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_74253801_74254018
ES_00042879	chr5	+	813	2	NIC	ENSMUSG00000106943.3	novel	575	3	NA	NA	-4	0	intron_retention	FALSE	canonical	3	119	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTTCACTTGTTCT	NA	False	NA	18	True	AATAAA	-20	NA	74253716	74254997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_74254081_74254548
ES_00042881	chr5	+	4789	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	-22	2	0	-2	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCATTACCCTGACT	NA	False	NA	21	True	AATAAA	-30	NA	74696109	74759459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00042882	chr5	+	2263	19	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-7	51	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	215.964760499897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATCTAAGAAAGTAATG	NA	False	NA	73	True	AATAAA	-15	NA	74696102	74756857	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00042885	chr5	+	1979	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	-10	0	0	0	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696131	74756806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00042886	chr5	+	2205	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	2	51	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	229.420784136424	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATCTAAGAAAGTAATG	NA	False	NA	73	True	AATAAA	-15	NA	74696133	74756857	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00042894	chr5	+	5216	21	FSM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	-2	0	-2	0	multi-exon	FALSE	canonical	3	392	junction_9	204.916348786523	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	764	False	NA	14	True	NA	NA	NA	75735612	75817382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ES_00042903	chr5	+	3272	18	FSM	ENSMUSG00000036435.14	ENSMUST00000049469.13	3272	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	35.7889816992977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGATAATATTCTTAAG	NA	False	NA	10	True	AATAAA	-20	NA	76677204	76718134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ES_00042912	chr5	+	1882	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	-20	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	327	False	NA	9	True	NA	NA	NA	77099194	77115160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ES_00042913	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	327	False	NA	19	True	ATTAAA	-22	NA	77099194	77115356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ES_00042914	chr5	+	2212	9	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	450	junction_1	967.654089796555	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	361	False	NA	9	True	NA	NA	NA	77099228	77115160	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ES_00042915	chr5	+	1506	2	FSM	ENSMUSG00000029247.18	ENSMUST00000154688.2	443	2	-399	-664	-399	0	multi-exon	FALSE	canonical	3	3796	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	NA	False	NA	15	True	ATTAAA	-18	NA	77113604	77115352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_77114253_77114494
ES_00042919	chr5	+	7850	4	FSM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	-801	-125	-96	125	multi-exon	FALSE	canonical	3	119	junction_1	347.74543690592	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGTAGGCAAGAGCTCC	3600	False	NA	NA	False	NA	NA	NA	77413241	77434404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_77414261_77415778_77416671_77423080_77423165_77428549
ES_00042929	chr5	+	4592	17	NIC	ENSMUSG00000035851.15	novel	3269	17	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_11	68.274234479414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86952126	86984518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86977339_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ES_00042930	chr5	+	3330	17	FSM	ENSMUSG00000035851.15	ENSMUST00000038384.8	2960	17	-370	0	-27	0	multi-exon	FALSE	canonical	3	72	junction_13	59.5315042645489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTGTATTTCCTTGT	NA	False	NA	11	True	AATAAA	-19	NA	86952052	86984516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
ES_00042933	chr5	+	1294	1	FSM	ENSMUSG00000104802.2	ENSMUST00000200248.2	1257	1	-43	6	-43	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCTTCTAAGCTTATGGC	NA	False	NA	NA	False	NA	NA	NA	87144974	87146268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_87145000_87146300
ES_00042936	chr5	+	3536	18	FSM	ENSMUSG00000029291.12	ENSMUST00000198965.5	3536	18	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_11	15.8934601684016	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTTGGTTGTCTT	NA	False	NA	11	True	AATAAA	-15	NA	88712898	88799251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_88713336_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883_88775950_88778395_88778466_88780297_88780391_88783050_88783135_88785050_88785219_88786839_88786938_88790787_88790908_88791926_88792024_88793395_88793461_88795077_88795106_88796114_88796184_88797690
ES_00042938	chr5	+	909	7	NNC	ENSMUSG00000029291.12	novel	3703	13	NA	NA	27800	10531	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	48.7285565374373	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCAGTCCAAGCTAATT	813	False	NA	NA	False	AATACA	-14	NA	88759452	88776067	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_88759598_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883
ES_00042941	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88912854	88931140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ES_00042946	chr5	+	2951	4	FSM	ENSMUSG00000102644.6	ENSMUST00000192174.6	1996	4	569	-1524	140	43	multi-exon	FALSE	canonical	3	9	junction_1	7.48331477354788	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGGAAAAATAAAAAGACCT	NA	False	NA	NA	False	NA	NA	NA	92111331	92119968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92111382_92112954_92113164_92114310_92114434_92117399
ES_00042948	chr5	+	3558	13	FSM	ENSMUSG00000029407.11	ENSMUST00000201380.2	3549	13	-9	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	129.019674425604	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACCAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	92285796	92331914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756
ES_00042950	chr5	+	6820	11	FSM	ENSMUSG00000029381.17	ENSMUST00000113055.9	6765	11	168	-223	-22	219	multi-exon	FALSE	canonical	1	6	junction_2	46.2640249005639	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGTGCTATGCTGTGA	5548	False	NA	5	True	AATAAA	-17	NA	92831461	93113396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92831691_92928611_92928767_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ES_00042951	chr5	+	6692	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	-28	-229	-28	219	multi-exon	FALSE	canonical	3	62	junction_1	24.0066863114075	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGTGCTATGCTGTGA	NA	False	NA	5	True	AATAAA	-17	NA	93045823	93113396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_93046080_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ES_00042959	chr5	+	1806	10	FSM	ENSMUSG00000058013.12	ENSMUST00000202308.4	1792	10	-14	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	237.094813560491	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCCATCCCTGCCT	NA	False	NA	4	True	TTTAAA	-16	NA	93241295	93324296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93323898
ES_00042961	chr5	+	2774	8	FSM	ENSMUSG00000029385.15	ENSMUST00000031331.13	2810	8	36	0	36	0	multi-exon	FALSE	canonical	3	45	junction_3	8.90998064543581	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTATTTCAGTTTTTAAT	NA	False	NA	NA	False	AATAAA	-28	NA	93415151	93424090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_93415657_93416480_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
ES_00042964	chr5	+	1384	1	FSM	ENSMUSG00000107092.2	ENSMUST00000200970.2	1384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGCCATTCTTGTAGCT	NA	False	NA	NA	False	NA	NA	NA	96122098	96123482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_96122100_96123500
ES_00042968	chr5	+	460	4	FSM	ENSMUSG00000029484.13	ENSMUST00000199390.3	770	4	310	0	310	0	multi-exon	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGGCATCGTTCAGTGC	9422	False	NA	NA	False	NA	NA	NA	96978251	96993541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_96978348_96982633_96982693_96986151_96986275_96993359
ES_00042969	chr5	+	3244	14	FSM	ENSMUSG00000034663.14	ENSMUST00000112974.6	3244	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	5.94053371578702	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTTGTATGGTATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	97145547	97217508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_97145956_97175689_97175809_97178995_97179102_97184754_97184898_97186279_97186402_97188531_97188614_97192893_97193027_97200955_97201060_97202710_97202791_97204724_97204886_97209264_97209516_97211303_97211403_97212687_97212873_97216257
ES_00042972	chr5	+	598	6	FSM	ENSMUSG00000105078.3	ENSMUST00000198837.3	677	6	66	13	66	-13	multi-exon	FALSE	canonical	1	1	junction_2	2.03960780543711	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTACATGGAGTTACAG	NA	False	NA	NA	False	NA	NA	NA	100054240	100098938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100054265_100067054_100067126_100070875_100070973_100072700_100072803_100089084_100089247_100098796
ES_00042980	chr5	+	2154	6	FSM	ENSMUSG00000035297.15	ENSMUST00000123559.2	2154	6	0	0	0	0	multi-exon	FALSE	canonical	3	1193	junction_5	134.018804650691	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	NA	False	NA	20	True	AATAAA	-22	NA	100680107	100695646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ES_00042982	chr5	+	646	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	-8	0	-8	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946484	100952337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ES_00042983	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAACTAATTTGAGTGGA	NA	False	NA	41	True	AATAAA	-23	NA	100946602	100952327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
ES_00042984	chr5	+	463	5	FSM	ENSMUSG00000016833.15	ENSMUST00000198453.2	457	5	-6	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	769.215631341433	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTGAGTGGAAATGTCT	NA	False	NA	48	True	AATAAA	-30	NA	100946602	100952334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100946727_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ES_00042989	chr5	+	3916	12	NIC	ENSMUSG00000029330.9	novel	3924	13	NA	NA	-81	-6	combination_of_known_splicesites	TRUE	canonical	2	12	junction_6	15.7096590806342	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGACTTTGCGCTGCTGT	NA	False	NA	4	True	AATAAA	-13	NA	101912914	101971718	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101957751_101957840_101960360_101960430_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ES_00042990	chr5	+	3994	13	FSM	ENSMUSG00000029330.9	ENSMUST00000031273.9	3924	13	-70	0	-70	0	multi-exon	FALSE	canonical	3	31	junction_6	11.4561361529774	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCGCTGCTGTTTTCTA	NA	False	NA	10	True	AATAAA	-19	NA	101912925	101971724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101956531_101956615_101957751_101957840_101960360_101960430_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ES_00042993	chr5	+	902	3	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-53	0	intron_retention	FALSE	canonical	3	132	junction_1	6	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101987967	101992198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_101988098_101989616_101989940_101991749
ES_00042995	chr5	+	821	3	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-38	-2	intron_retention	FALSE	canonical	0	0	junction_1	72	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCAATTTCCTTTGGCT	NA	False	NA	13	True	ATTAAA	-23	NA	101987982	101992196	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_101988034_101989616_101989940_101991749
ES_00042998	chr5	+	6753	41	ISM	ENSMUSG00000034573.15	ENSMUST00000048957.11	7915	48	-319	15436	-10	-15436	5prime_fragment	FALSE	canonical	2	11	junction_18	12.6273265183094	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGATAAGTCCTGTTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	103573047	103730733	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837_103689253_103689387_103689483_103691273_103691331_103698090_103698181_103698614_103698723_103698912_103699045_103702561_103703020_103703953_103704086_103705744_103705839_103707002_103707089_103707736_103707900_103709797_103710013_103710140_103710240_103711876_103712206_103712980_103713156_103715891_103716051_103717295_103717468_103717563_103717775_103720955_103721024_103722944_103723007_103726738_103726833_103727563_103727702_103728535_103728619_103730604
ES_00043000	chr5	+	8432	21	NIC	ENSMUSG00000029313.19	novel	1613	7	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	3	246	junction_11	28.5472853350367	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCTTTTATTTTGTTC	NA	False	NA	31	True	AATAAA	-28	NA	103840239	104003195	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078_103964116_103966800_103966853_103973845_103973901_103974008_103974047_103976213_103976377_103981335_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567
ES_00043001	chr5	+	1344	7	NNC	ENSMUSG00000029313.19	novel	1613	7	NA	NA	87	-179	at_least_one_novel_splicesite	FALSE	canonical	2	32	junction_4	90.2381109435845	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGACCGTCTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	103840326	103964115	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958931_103958974_103962847_103962935_103964078
ES_00043002	chr5	+	8321	20	FSM	ENSMUSG00000029313.19	ENSMUST00000031256.6	8312	20	-9	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	69.9361006329718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGTGGCTTTTAT	NA	False	NA	24	True	AATAAA	-21	NA	103902429	104003188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_103902612_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078_103964116_103966800_103966853_103973845_103973901_103974008_103974047_103976213_103976377_103981335_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567
ES_00043005	chr5	+	1495	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	-15	8	-15	-8	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGACTTGTGTTTCAA	NA	False	NA	12	True	AATAAA	-15	NA	104194719	104213237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ES_00043009	chr5	+	1462	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	-3	-3	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ES_00043010	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ES_00043011	chr5	+	1509	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	0	-2	0	2	multi-exon	FALSE	canonical	3	5474	junction_2	333.11595578717	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGGAGTCTGGTGGTGT	NA	False	NA	26	True	AATAAA	-13	NA	104584057	104588911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ES_00043016	chr5	+	2721	3	Intergenic	novelGene_3186	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	32	junction_2	30.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGTGTGTTGAATTAC	NA	False	NA	NA	False	AATAAA	-17	NA	104719512	104732486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104719638_104728353_104728481_104730017
ES_00043023	chr5	+	3941	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	-12	0	-12	0	multi-exon	FALSE	canonical	3	312	junction_1	122	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4879	False	NA	19	True	AATAAA	-30	NA	105848642	105963076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_105848952_105880095_105880241_105959589
ES_00043025	chr5	+	2237	10	FSM	ENSMUSG00000029290.13	ENSMUST00000138615.8	1554	10	-42	-641	-31	0	multi-exon	TRUE	canonical	2	3	junction_3	13.4660065844828	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTCTTTTGTCATGT	NA	False	NA	NA	False	AATACA	-16	NA	106024399	106063684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_106024565_106026614_106026660_106034052_106034143_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ES_00043027	chr5	+	2879	11	FSM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	-15	0	-15	0	multi-exon	FALSE	canonical	3	29	junction_7	74.2377262582846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112172	107132297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ES_00043029	chr5	+	3690	11	FSM	ENSMUSG00000029283.18	ENSMUST00000140378.8	3679	11	-11	0	0	0	multi-exon	FALSE	canonical	3	199	junction_7	28.5629130167075	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112246	107132298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107123527_107124495_107124579_107127160_107127311_107130829
ES_00043030	chr5	+	3019	11	NIC	ENSMUSG00000029283.18	novel	3129	12	NA	NA	11	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	99.9841987516028	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATATCAGAATACTTATT	NA	False	NA	6	True	AATAAA	-11	NA	107112437	107132294	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_107112700_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ES_00043038	chr5	+	1024	3	FSM	ENSMUSG00000058558.13	ENSMUST00000140659.2	1024	3	0	0	0	0	multi-exon	FALSE	canonical	3	7486	junction_1	330	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	-2	True	AATAAA	-16	NA	108051979	108055916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108052761_108055054_108055144_108055762
ES_00043042	chr5	+	3979	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4949	0	intron_retention	FALSE	canonical	3	616	junction_3	357.553592386612	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208590	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043043	chr5	+	3906	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4922	0	intron_retention	FALSE	canonical	3	67	junction_9	702.833409152132	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208617	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043044	chr5	+	4104	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4926	0	intron_retention	FALSE	canonical	3	182	junction_1	547.456177850489	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208613	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043045	chr5	+	3186	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4921	-54	intron_retention	FALSE	canonical	3	86	junction_9	657.497330637865	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTTTTCTTGTTGTTT	NA	False	NA	49	True	NA	NA	NA	108208618	108256081	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043046	chr5	+	3854	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4921	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	521.57970412498	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208618	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108228787_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043047	chr5	+	4174	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4942	0	intron_retention	FALSE	canonical	3	93	junction_2	597.733548962709	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208597	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043048	chr5	+	4334	16	NIC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	80	junction_1	606.940948985612	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213539	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108213832_108217027_108217230_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043049	chr5	+	6522	19	NNC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	0	19934	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	754.489838676882	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGATAGAAAAGAGATA	NA	False	NA	NA	False	NA	NA	NA	108213539	108276804	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228708_108228787_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108258841_108276650
ES_00043050	chr5	+	674	2	FSM	ENSMUSG00000029267.18	ENSMUST00000199194.2	673	2	-1	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGGAACTGAATGAGTCA	NA	False	NA	NA	False	NA	NA	NA	108213581	108217451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108213832_108217027
ES_00043051	chr5	+	3732	17	FSM	ENSMUSG00000029267.18	ENSMUST00000131264.8	3732	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	753.559387175291	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGTAGCTCTTCATTT	NA	False	NA	103	True	AGTAAA	-13	NA	108213581	108256135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
ES_00043052	chr5	+	4238	16	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	55	junction_1	567.731258803161	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213581	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108213832_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043054	chr5	+	3330	15	FSM	ENSMUSG00000029267.18	ENSMUST00000143412.8	3330	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	498.553709263514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	104	True	AGTAAA	-14	NA	108213607	108256136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00043063	chr5	+	1444	9	NIC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	44.6598253467252	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACACTTTTCCTGATAC	NA	False	NA	28	True	ATTAAA	-36	NA	108777650	108792982	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108777767_108786102_108786357_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ES_00043064	chr5	+	1445	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	-9	3666	-9	0	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACACTTTTCCTGATAC	NA	False	NA	28	True	ATTAAA	-36	NA	108777688	108792982	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ES_00043065	chr5	+	1579	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-177	1555	0	0	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACACTTTTCCTGATAC	NA	False	NA	28	True	ATTAAA	-36	NA	108777697	108792982	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ES_00043066	chr5	+	3956	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTTAGCCTTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	108777697	108796648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ES_00043070	chr5	+	438	3	FSM	ENSMUSG00000008090.15	ENSMUST00000197255.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	32.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTGCGGCTACAGTGC	NA	False	NA	NA	False	NA	NA	NA	108842095	108851205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108842399_108842903_108842985_108851151
ES_00043072	chr5	+	2563	7	FSM	ENSMUSG00000008090.15	ENSMUST00000013633.12	2329	7	-234	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	17.0171482138851	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCGTATATTTAATTT	NA	False	NA	-24	True	NA	NA	NA	108842133	108854762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108842399_108842760_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ES_00043079	chr5	+	2081	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTCATGGTATCTTT	8370	False	NA	22	True	NA	NA	NA	110144386	110158277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
ES_00043080	chr5	+	452	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	-1	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	18.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCAGGTGTCTGATT	8370	False	NA	NA	False	NA	NA	NA	110144386	110155333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110144500_110154809_110154937_110155121
ES_00043081	chr5	+	879	5	FSM	ENSMUSG00000066613.15	ENSMUST00000125213.8	868	5	-11	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	94.3514043350707	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAGGTCAGAATGATCT	8370	False	NA	NA	False	NA	NA	NA	110144386	110156975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110144500_110151218_110151319_110154809_110154937_110155121_110155183_110156497
ES_00043082	chr5	+	2509	3	FSM	ENSMUSG00000066613.15	ENSMUST00000112536.8	2509	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	57	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTGGTCATGG	NA	False	NA	15	True	NA	NA	NA	110154261	110158270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110154937_110155121_110155183_110156497
ES_00043085	chr5	+	5625	5	FSM	ENSMUSG00000023284.16	ENSMUST00000147631.8	748	5	-277	-4600	-18	2224	multi-exon	TRUE	canonical	3	14	junction_1	18.0052075800308	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTTGGCTTCATCATT	1931	False	NA	NA	False	NA	NA	NA	110257939	110279884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110258409_110259762_110259933_110271625_110271747_110272218_110272312_110275112
ES_00043089	chr5	+	3223	18	FSM	ENSMUSG00000014668.16	ENSMUST00000014812.13	3146	18	-80	3	-62	0	multi-exon	FALSE	canonical	3	81	junction_11	67.7699140155478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283645	110319835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ES_00043090	chr5	+	3201	19	FSM	ENSMUSG00000014668.16	ENSMUST00000198066.5	3201	19	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	86.3223931292197	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283743	110319835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ES_00043095	chr5	+	8186	24	FSM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	-54	0	-54	0	multi-exon	FALSE	canonical	3	40	junction_3	20.4320997313759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTCATAATTCATTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	110324512	110374336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110324789_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ES_00043097	chr5	+	8139	24	NIC	ENSMUSG00000029502.15	novel	711	3	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.7049976560749	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTCATAATTCATTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	110324806	110374336	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_110324916_110329468_110329780_110332203_110332474_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ES_00043103	chr5	+	757	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	-10	0	-10	0	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTTCTGTTTTGTGC	NA	False	NA	9	True	AATAAA	-15	NA	110434196	110439101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
ES_00043106	chr5	+	692	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCAGTCCATGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110501961	110503960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
ES_00043111	chr5	+	970	5	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	-37	24277	-16	-25	5prime_fragment	FALSE	canonical	3	120	junction_1	80.3632378640881	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTGGGATAAGCG	9162	False	NA	NA	False	AATAAA	-18	NA	110987828	110997734	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461
ES_00043112	chr5	+	1050	6	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	14	-24	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	110.44202098839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTGTTGGGATAAGCGC	9213	False	NA	NA	False	AATAAA	-19	NA	110987879	110997735	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461
ES_00043115	chr5	+	2023	3	FSM	ENSMUSG00000033209.18	ENSMUST00000143505.2	1557	3	0	-466	0	466	multi-exon	FALSE	canonical	3	14	junction_2	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAATCCATCTAATATT	NA	False	NA	NA	False	NA	NA	NA	111027687	111062648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_111027855_111040697_111040977_111061071
ES_00043119	chr5	+	2629	11	FSM	ENSMUSG00000050017.12	ENSMUST00000200298.2	2632	11	0	3	0	-3	multi-exon	FALSE	canonical	0	0	junction_3	361.683231571495	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCACCTGTGTGCTCCTGT	NA	False	NA	13	True	AATAAA	-14	NA	111478672	111536222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
ES_00043125	chr5	+	931	6	NIC	ENSMUSG00000029344.16	novel	1813	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424542	112463221	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ES_00043126	chr5	+	1796	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGAGTGAGTAGCTTTC	NA	False	NA	20	True	AATAAA	-30	NA	112436629	112463220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ES_00043128	chr5	+	2844	14	FSM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	-8	0	4	0	multi-exon	FALSE	canonical	3	24	junction_1	21.6682900317355	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490952	112526280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ES_00043129	chr5	+	3366	14	FSM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	-21	0	-21	0	multi-exon	TRUE	canonical	3	34	junction_1	19.6098031274724	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490927	112526280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ES_00043133	chr5	+	3232	8	ISM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	50742	5	1009	2	3prime_fragment	FALSE	canonical	3	32	junction_6	7.59430506285829	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGCCCAGTTGTGTAT	NA	False	NA	9	True	ATTAAA	-19	NA	113689054	113727781	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
ES_00043139	chr5	+	1947	4	FSM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	-77	-475	-22	0	multi-exon	FALSE	canonical	3	687	junction_1	22.86676384819	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTACTGAACCTGA	3573	False	NA	NA	False	AATAAA	-15	NA	113910786	113916334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831
ES_00043140	chr5	+	1193	5	FSM	ENSMUSG00000025825.13	ENSMUST00000112312.8	1116	5	-77	0	-22	0	multi-exon	FALSE	canonical	3	17	junction_4	304.763330307306	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTACTGAACCTGA	3573	False	NA	NA	False	AATAAA	-15	NA	113910786	113916334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113915140_113915893
ES_00043147	chr5	+	2136	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGTGCCGACTATTCTT	NA	False	NA	21	True	AATAAA	-17	NA	114268986	114277382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ES_00043149	chr5	+	8213	52	FSM	ENSMUSG00000042010.17	ENSMUST00000031583.15	8482	52	269	0	269	0	multi-exon	FALSE	canonical	3	7	junction_1	13.6829312170213	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTTCTGGCCTTGA	NA	False	NA	3	True	AATAAA	-13	NA	114303847	114388816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114304202_114322110_114322244_114326391_114326531_114328136_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363914_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ES_00043153	chr5	+	1068	8	FSM	ENSMUSG00000041939.15	ENSMUST00000124260.8	1051	8	-17	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	59.7863543232509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582346	114591211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940
ES_00043156	chr5	+	1701	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-48	7	-11	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAAGCCTTGGGCCCTG	NA	False	NA	NA	False	AATAAA	-13	NA	114582318	114598645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ES_00043165	chr5	+	1892	2	Intergenic	novelGene_3240	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	64	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCATGCCATCTGTGT	662	False	NA	5	True	NA	NA	NA	115341981	115344407	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115342214_115342747
ES_00043166	chr5	+	1866	2	Intergenic	novelGene_3241	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCATGCCATCTGTGT	664	False	NA	5	True	NA	NA	NA	115341983	115344407	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115342190_115342747
ES_00043167	chr5	+	1025	6	FSM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	325.291254109298	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCCCGTGTGGTTCGAG	NA	False	NA	36	True	AATAAA	-38	NA	115373894	115379050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115373944_115375882_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
ES_00043168	chr5	+	740	5	NNC	ENSMUSG00000060152.15	novel	1587	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_4	310.758246069191	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGCACTTGCCTT	NA	False	NA	11	True	AATAAA	-13	NA	115376090	115379025	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378700
ES_00043172	chr5	+	2383	6	FSM	ENSMUSG00000029538.15	ENSMUST00000209604.2	1392	6	-342	-649	-124	649	multi-exon	FALSE	canonical	2	8	junction_3	751.427015750698	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTGGGAGGCTGTAGCA	10	True	NA	NA	False	NA	NA	NA	115465111	115471788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115465559_115466405_115466764_115468556_115468718_115469508_115469599_115470175_115470349_115470634
ES_00043175	chr5	+	3133	15	FSM	ENSMUSG00000054256.12	ENSMUST00000150779.8	3133	15	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	14.3358050392173	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2389	False	NA	15	True	AATAAA	-15	NA	115567657	115593757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588845_115589034_115589515_115589580_115591884
ES_00043192	chr5	+	2839	6	FSM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	-19	0	-19	0	multi-exon	FALSE	canonical	3	206	junction_5	16.4438438328756	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTAGGGTCTGTCTGCTC	NA	False	NA	25	True	AATAAA	-21	NA	115769947	115785795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115770258_115775774_115775826_115778138_115778263_115781426_115781552_115781633_115781759_115783691
ES_00043197	chr5	+	8871	47	FSM	ENSMUSG00000029516.20	ENSMUST00000051704.15	9514	47	640	3	-87	-3	multi-exon	FALSE	canonical	1	1	junction_46	10.0756120614134	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATACGTTCACTCCCTT	9487	False	NA	NA	False	AATAAA	-41	NA	115984342	116147003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732_116135913_116143840_116144151_116144363
ES_00043203	chr5	+	4414	28	FSM	ENSMUSG00000029516.20	ENSMUST00000122877.8	4398	28	-18	2	-18	-2	multi-exon	FALSE	canonical	3	9	junction_12	8.77441723450695	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATTTTTGTTTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	116083337	116136555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_116083531_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119708_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ES_00043206	chr5	+	1678	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	-1167	51	-1167	-51	multi-exon	FALSE	canonical	3	381	junction_2	4	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGGTTGAAAGGAAAAAAAG	NA	False	NA	NA	False	TATAAA	-44	NA	116575611	116600106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_116576898_116577427_116577496_116599782
ES_00043208	chr5	+	3600	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	5	184	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCAAGAACCTGTGTT	NA	False	NA	NA	False	GGGGCT	-37	NA	116576783	116603730	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
ES_00043209	chr5	+	212	1	FSM	ENSMUSG00000107327.2	ENSMUST00000201054.2	581	1	512	-143	512	143	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACTTAAGGTATCTTGC	NA	False	NA	NA	False	NA	NA	NA	117197388	117197600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117197400_117197600
ES_00043210	chr5	+	1536	8	FSM	ENSMUSG00000061288.14	ENSMUST00000111975.3	2172	8	636	0	636	0	multi-exon	FALSE	canonical	0	0	junction_5	2.6954231805876	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAGAAAACAAAAA	NA	False	NA	21	True	ATTAAA	-27	NA	117379160	117411932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
ES_00043212	chr5	+	4236	10	FSM	ENSMUSG00000066894.15	ENSMUST00000111967.8	4236	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	6.48264539813992	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTATGGTCTTGAT	NA	False	NA	3	True	AATAAA	-19	NA	117457147	117493070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271_117476527_117481790_117482079_117486359_117486471_117487948_117487965_117489629_117489857_117490815
ES_00043215	chr5	+	2421	9	FSM	ENSMUSG00000029364.16	ENSMUST00000031309.16	2421	9	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_4	52.4760361974873	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCTGTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	117495368	117516666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117495539_117501655_117501825_117508755_117509001_117509153_117509286_117512177_117512279_117513833_117514007_117514561_117514673_117514755_117514864_117515454
ES_00043220	chr5	+	3893	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	-10	0	0	0	multi-exon	FALSE	canonical	3	306	junction_9	49.846707161818	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCAGTGACCTGCCCGCT	NA	False	NA	10	True	AATAAA	-21	NA	118114838	118148265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
ES_00043223	chr5	+	999	8	FSM	ENSMUSG00000029359.14	ENSMUST00000124648.8	981	8	-18	0	4	0	multi-exon	FALSE	canonical	3	17	junction_5	26.954231805876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGACAATAAAGGTTTCCT	NA	False	NA	-16	True	NA	NA	NA	118165811	118199910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
ES_00043224	chr5	+	830	8	FSM	ENSMUSG00000029359.14	ENSMUST00000151792.8	785	8	-45	0	-45	0	multi-exon	FALSE	canonical	3	17	junction_5	31.162510181568	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTAACCCTTCTTCAGT	4323	False	NA	-88	True	NA	NA	NA	118174050	118199838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
ES_00043225	chr5	+	5382	2	FSM	ENSMUSG00000046607.7	ENSMUST00000054836.7	5382	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGCCTCTGTGTGTTTT	NA	False	NA	NA	False	TTTAAA	-21	NA	118307812	118327543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118308194_118322542
ES_00043230	chr5	+	233	1	FSM	ENSMUSG00000082365.3	ENSMUST00000119191.2	478	1	112	133	112	-133	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGACTGGCGATCTGCC	1490	False	NA	NA	False	NA	NA	NA	118641016	118641249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118641000_118641200
ES_00043233	chr5	+	5311	8	FSM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	-697	163	-504	0	multi-exon	FALSE	canonical	3	95	junction_1	319.496925985659	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	119808229	119822626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_119809123_119809297_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ES_00043234	chr5	+	2988	1	FSM	ENSMUSG00000018604.19	ENSMUST00000202034.2	2995	1	0	7	0	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTCAGGAAAGAAGAAGAAG	NA	False	NA	NA	False	ACTAAA	-4	NA	119808733	119811721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_119808700_119811700
ES_00043235	chr5	+	4856	8	FSM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	231.190088764326	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119809082	119822789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_119810470_119812090_119812359_119813307_119813368_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ES_00043240	chr5	+	2553	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	12	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	57.0079794609686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	8	True	NA	6	True	AATAAA	-22	NA	120649244	120672089	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ES_00043241	chr5	+	2661	14	FSM	ENSMUSG00000032754.15	ENSMUST00000076051.12	2661	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	64.1450833343938	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACCAGAAGAGTCCCACA	80	False	NA	2	True	AATAAA	-18	NA	120649316	120672085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120670924
ES_00043246	chr5	+	2062	6	FSM	ENSMUSG00000032623.10	ENSMUST00000044224.5	2021	6	-44	3	-44	-3	multi-exon	FALSE	canonical	3	143	junction_4	11.5654658358408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGAATTAATTTATTCT	NA	False	NA	16	True	ATTAAA	-22	NA	121052554	121059712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ES_00043253	chr5	+	1656	13	FSM	ENSMUSG00000042744.17	ENSMUST00000128514.2	2239	13	0	583	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.89296944860009	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTCAGAGAGTGGGGG	NA	False	NA	NA	False	TATAAA	-1	NA	121424895	121442514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_121424929_121427629_121427701_121429257_121429364_121430111_121430233_121430792_121430916_121433437_121433563_121435165_121435320_121436121_121436223_121437507_121437707_121439831_121439952_121440699_121440805_121441594_121441759_121442280
ES_00043263	chr5	+	3669	13	NNC	ENSMUSG00000029458.15	novel	3744	12	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	54	junction_12	32.1769197821461	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTACGTTTGAGTCTGAA	945	False	NA	12	True	AATAAA	-22	NA	121798663	121825311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_121798912_121800062_121800225_121801358_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191_121824288_121824316
ES_00043266	chr5	+	4493	25	FSM	ENSMUSG00000042605.17	ENSMUST00000051950.14	4472	25	-21	0	-21	0	multi-exon	FALSE	canonical	0	0	junction_9	70.6657699432099	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	621	False	NA	4	True	TTTAAA	-7	NA	121849650	121953013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ES_00043267	chr5	+	4142	23	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	107	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	58.0259987326855	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	749	False	NA	4	True	TTTAAA	-7	NA	121849778	121953013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
ES_00043268	chr5	+	4188	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	107	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	70.5151447085683	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACCCAGTTAGTGTGTGT	749	False	NA	2	True	TTTAAA	-5	NA	121849778	121953011	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121952400
ES_00043269	chr5	+	4214	25	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	70.075703112182	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGTTAGTGTGTGTT	893	False	NA	3	True	TTTAAA	-6	NA	121849922	121953012	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ES_00043270	chr5	+	4083	23	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-95	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	57.0768837723033	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATACCCAGTTAGTGTGT	798	False	NA	0	True	TTTAAA	-3	NA	121849827	121953009	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
ES_00043271	chr5	+	4429	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	57.6288233911142	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	625	False	NA	4	True	TTTAAA	-7	NA	121849654	121953013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ES_00043279	chr5	+	2492	6	FSM	ENSMUSG00000004455.17	ENSMUST00000128309.8	2492	6	0	0	0	0	multi-exon	FALSE	canonical	3	2504	junction_1	193.218425622403	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTCGTGTCTTTCTGTC	NA	False	NA	-1	True	ATTAAA	-15	NA	122296418	122313332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311344_122312117
ES_00043280	chr5	+	1442	8	FSM	ENSMUSG00000004455.17	ENSMUST00000086294.11	1442	8	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_7	836.265410461711	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296418	122313336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117_122312179_122313042
ES_00043281	chr5	+	1632	7	FSM	ENSMUSG00000004455.17	ENSMUST00000132555.8	1632	7	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_6	895.497518453042	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296418	122313336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311344_122312117_122312179_122313042
ES_00043287	chr5	+	2716	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	679	False	NA	11	True	AATAAA	-24	NA	122492431	122503047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ES_00043289	chr5	+	729	3	FSM	ENSMUSG00000029462.19	ENSMUST00000118765.8	713	3	-16	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACCTTCCATTTAGAC	716	False	NA	1	True	AATAAA	-1	NA	122492468	122501333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122492540_122498075_122498268_122500867
ES_00043291	chr5	+	1592	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8039	False	NA	NA	False	AATAAA	-42	NA	122510513	122520965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
ES_00043294	chr5	+	3599	10	FSM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_7	31.1071426040332	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGTGTTTTGCCTGCA	NA	False	NA	NA	False	ATTAAA	-14	NA	122560543	122581497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352
ES_00043298	chr5	+	2544	13	FSM	ENSMUSG00000029468.18	ENSMUST00000121489.8	2576	13	22	10	-6	-2	multi-exon	TRUE	canonical	1	1	junction_12	7.05927286151579	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAGAATTCTCTTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	122781995	122822350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122795074_122795148_122796770_122796868_122801639_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122821237
ES_00043312	chr5	+	493	1	FSM	ENSMUSG00000029440.16	ENSMUST00000196137.2	774	1	228	53	228	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAGCTCGAGGCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	123366548	123367041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_123366500_123367000
ES_00043313	chr5	+	4454	6	FSM	ENSMUSG00000029438.10	ENSMUST00000031391.9	4718	6	9	255	9	-255	multi-exon	FALSE	canonical	3	24	junction_2	4.53431361950185	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTTAGAGTTCAAGGTC	NA	False	NA	NA	False	NA	NA	NA	123482519	123512800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
ES_00043315	chr5	+	7030	64	FSM	ENSMUSG00000029414.12	ENSMUST00000031366.12	6961	64	-70	1	-60	0	multi-exon	FALSE	canonical	3	266	junction_8	72.5550989140863	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGTTTCTTGTGTCAT	NA	False	NA	28	True	AATAAA	-20	NA	123887718	123959655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_123887888_123891885_123892061_123893736_123893858_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
ES_00043322	chr5	+	227	2	Genic_Genomic	ENSMUSG00000061882.13	novel	4470	1	NA	NA	642	51038	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTTATTTTGTGTTG	NA	False	NA	NA	False	AAGAAA	-42	NA	124101332	124158996	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_124101534_124158970
ES_00043327	chr5	+	818	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198770.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	30.8506077735918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACTTGAGCCTGGTTC	NA	False	NA	-93	True	NA	NA	NA	124250493	124253030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252450_124252709_124252777
ES_00043328	chr5	+	770	3	FSM	ENSMUSG00000023707.14	ENSMUST00000148365.8	770	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	16	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGAGTGGGGGCAGCTCA	NA	False	NA	NA	False	NA	NA	NA	124250877	124252280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124251395_124251491_124251592_124252127
ES_00043334	chr5	+	3945	8	FSM	ENSMUSG00000049327.18	ENSMUST00000147969.8	2112	8	-1068	-765	-1056	0	multi-exon	FALSE	canonical	3	31	junction_1	287.390653562537	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGTTGTTGTTGTTA	3340	False	NA	29	True	AATAAA	-38	NA	124582499	124600371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124583792_124584031_124584148_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ES_00043335	chr5	+	4614	7	FSM	ENSMUSG00000049327.18	ENSMUST00000100709.7	1425	7	-1841	-1348	-1841	0	multi-exon	FALSE	canonical	3	345	junction_1	170.424388578109	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGTTGTTGTTGTTA	2555	False	NA	29	True	AATAAA	-38	NA	124581714	124600371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124583792_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ES_00043344	chr5	+	2572	5	NNC	ENSMUSG00000029390.14	novel	455	5	NA	NA	55	37924	intron_retention	FALSE	non_canonical	0	0	junction_4	1550.961798369	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTCTCTGCCTTTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	124678812	124726493	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143_124688564_124725934
ES_00043347	chr5	+	730	9	FSM	ENSMUSG00000029387.11	ENSMUST00000153436.8	725	9	-5	0	-5	0	multi-exon	FALSE	canonical	3	673	junction_7	54.5353956160584	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCCCCGATCCACGTGG	NA	False	NA	NA	False	NA	NA	NA	124721904	124733659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615
ES_00043348	chr5	+	620	2	FSM	ENSMUSG00000029387.11	ENSMUST00000143810.2	620	2	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCACGTGGACTACAGGG	7199	False	NA	NA	False	NA	NA	NA	124732327	124733668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124732895_124733615
ES_00043350	chr5	+	5363	20	FSM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	-18	0	-18	0	multi-exon	TRUE	canonical	3	142	junction_14	17.8821937464506	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTAGTTTTCTTGTGAT	NA	False	NA	10	True	AATAAA	-21	NA	124767098	124801519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
ES_00043354	chr5	+	6473	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	23.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTGGATGGATTTCTT	NA	False	NA	30	True	AATAAA	-22	NA	125518631	125537434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_125518957_125528733_125528837_125531389
ES_00043355	chr5	+	745	4	FSM	ENSMUSG00000037905.14	ENSMUST00000198811.2	745	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	166.423823080979	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGACCGCTCCAAGGA	NA	False	NA	NA	False	NA	NA	NA	125518813	125531790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_125518957_125528733_125528837_125529211_125529310_125531389
ES_00043359	chr5	+	3413	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	8701	False	NA	NA	False	NA	NA	NA	127709325	127786438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
ES_00043364	chr5	+	2494	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	0	-71	0	71	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGCCAAATAGCGAGTTC	545	False	NA	92	True	NA	NA	NA	129097335	129101458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ES_00043365	chr5	+	3385	14	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	45735	0	45728	0	3prime_fragment	FALSE	canonical	1	2	junction_1	19.2891421768092	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	NA	False	NA	29	True	AATAAA	-17	NA	129219548	129281663	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_129219600_129221030_129221173_129239658_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ES_00043367	chr5	+	3445	19	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_15	22.5492602052145	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGGGCTCTCCTTCTTC	NA	False	NA	16	True	AATAAA	-29	NA	129578305	129648448	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129636532_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ES_00043374	chr5	+	866	4	FSM	ENSMUSG00000034211.15	ENSMUST00000118420.8	843	4	-23	0	-16	0	multi-exon	FALSE	canonical	3	33	junction_2	354.785381134379	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCCCCAAAGAAATCTT	738	False	NA	-60	True	NA	NA	NA	129792544	129795461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792614_129792747_129792923_129793790_129793931_129794979
ES_00043375	chr5	+	854	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	-22	0	-16	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	738	False	NA	23	True	CATAAA	-12	NA	129792544	129795544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ES_00043376	chr5	+	2028	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121339.2	2182	3	-30	184	-16	0	multi-exon	FALSE	canonical	3	460	junction_1	221	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	738	False	NA	NA	False	NA	NA	NA	129792544	129795755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792614_129792747_129793931_129794979
ES_00043377	chr5	+	5077	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	-16	0	-16	0	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTTGTTTCTGTT	738	False	NA	NA	False	NA	NA	NA	129792544	129799620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ES_00043378	chr5	+	1230	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119604.8	1208	4	-22	0	-3	0	multi-exon	FALSE	canonical	3	22	junction_2	359.259732722101	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	751	False	NA	NA	False	NA	NA	NA	129792557	129795755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792614_129792747_129793006_129793790_129793931_129794979
ES_00043380	chr5	+	878	3	FSM	ENSMUSG00000034211.15	ENSMUST00000119985.2	859	3	-19	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	192.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	815	False	NA	-10	True	AAGAAA	-35	NA	129792621	129795511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792828_129793790_129793931_129794979
ES_00043381	chr5	+	804	3	NNC	ENSMUSG00000034211.15	novel	859	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	426.5	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	954	False	NA	-10	True	AAGAAA	-35	NA	129792760	129795511	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_129792893_129793790_129793931_129794979
ES_00043385	chr5	+	215	1	Genic_Genomic	ENSMUSG00000029447.14	novel	NA	NA	NA	NA	976	5	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACTAGTTTGAATACTTT	NA	False	NA	NA	False	NA	NA	NA	129867917	129868132	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_129867900_129868100
ES_00043386	chr5	+	2323	9	FSM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	0	-59	0	59	multi-exon	FALSE	canonical	3	460	junction_6	14.1371629049113	8553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTAGCTGTACCAGAGG	NA	False	NA	NA	False	NA	NA	NA	129875826	129892950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ES_00043396	chr5	+	1495	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	-3	0	-3	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058127	130089630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ES_00043397	chr5	+	1596	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	-55	-872	-2	15	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTATGTTTGTGTGTTG	NA	False	NA	20	True	AAAACA	-16	NA	130058128	130089645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ES_00043403	chr5	+	405	1	FSM	ENSMUSG00000080893.2	ENSMUST00000118998.2	402	1	-3	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCAGTGAAGACTGTTCCT	3488	False	NA	NA	False	NA	NA	NA	130217232	130217637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130217200_130217600
ES_00043404	chr5	+	3530	7	FSM	ENSMUSG00000053094.16	ENSMUST00000065329.13	3607	7	0	77	0	22	multi-exon	FALSE	canonical	2	4	junction_1	200.953283681114	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGATTGGTGTTCTTTAA	6426	False	NA	36	True	AATAAA	-37	NA	130248584	130272529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130248761_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
ES_00043405	chr5	+	3586	7	FSM	ENSMUSG00000053094.16	ENSMUST00000111298.6	3570	7	-16	0	-16	0	multi-exon	FALSE	canonical	3	519	junction_4	20.4042479237372	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTGCCGTTTTAATTC	9001	False	NA	14	True	AATAAA	-15	NA	130251159	130272507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130251414_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
ES_00043408	chr5	+	1881	8	FSM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	-11	-3	-11	3	multi-exon	FALSE	canonical	1	1	junction_7	111.662392039211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTGACTTAGGCTGGGT	4917	False	NA	NA	False	TTTAAA	-8	NA	130285864	130306593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130305829
ES_00043409	chr5	+	3060	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	-16	0	-16	0	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGACATGTTCCCATGCTT	4912	False	NA	NA	False	AATAAA	-17	NA	130285859	130370404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ES_00043417	chr5	+	204	1	Intergenic	novelGene_3316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTTGTTTTTGTTTTTG	3387	False	NA	NA	False	NA	NA	NA	134680088	134680292	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_134680100_134680300
ES_00043419	chr5	+	1410	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111218.8	1387	6	-23	0	1	0	multi-exon	FALSE	canonical	3	11	junction_1	38.4988311510882	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGAAAAAAAATAAAAATA	3413	False	NA	16	True	NA	NA	NA	134961222	134970056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ES_00043420	chr5	+	1805	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	-15	0	-10	0	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAGAAAGTAAAGAGA	3402	False	NA	NA	False	NA	NA	NA	134961211	134970577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ES_00043426	chr5	+	1465	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	23	5	23	0	multi-exon	FALSE	canonical	3	445	junction_1	65.8634952003004	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038175	135041024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ES_00043427	chr5	+	1590	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	-156	39	1	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAACACTTTTAATGAAT	NA	False	NA	-29	True	NA	NA	NA	135038153	135040985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ES_00043428	chr5	+	1490	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	-15	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038544	135041024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135038972_135039740_135040520_135040740
ES_00043432	chr5	+	1386	1	FSM	ENSMUSG00000061118.9	ENSMUST00000071263.7	1661	1	24	251	24	-251	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAAAGGCTTGAGGGT	3156	False	NA	NA	False	NA	NA	NA	135093079	135094465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135093100_135094500
ES_00043433	chr5	+	3807	2	Genic_Genomic	ENSMUSG00000061118.9	novel	1661	1	NA	NA	58	3528	multi-exon	FALSE	canonical	1	4	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAACAATGACTC	3190	False	NA	NA	False	NA	NA	NA	135093113	135098244	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_135094257_135095580
ES_00043437	chr5	+	1745	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	13	0	13	0	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	8682	False	NA	29	True	ATTAAA	-24	NA	135197149	135210709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
ES_00043438	chr5	+	564	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	118	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	8775	False	NA	NA	False	AAAACA	-3	NA	135197242	135202302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135197453_135199940_135200017_135202024
ES_00043445	chr5	+	6179	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	0	-1816	0	1816	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCGGTCTCTGTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	135661507	135677118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
ES_00043446	chr5	+	4207	2	FSM	ENSMUSG00000039917.11	ENSMUST00000084599.4	4207	2	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTTCTTTTTAGTAAAA	NA	False	NA	NA	False	AGTAAA	-2	NA	135665385	135673381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135668095_135671883
ES_00043449	chr5	+	2606	15	FSM	ENSMUSG00000005514.15	ENSMUST00000122113.8	2606	15	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_9	18.0894884349098	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	2023	False	NA	14	True	AATAAA	-14	NA	135718011	135764180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763561_135763666
ES_00043451	chr5	+	1471	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	-15	0	-15	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	438	False	NA	38	True	AGTAAA	-25	NA	135807318	135819245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ES_00043456	chr5	+	2651	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	-1	0	-1	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGGGAAGTTTTGTGT	8458	False	NA	16	True	AATAAA	-21	NA	136023652	136061726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
ES_00043457	chr5	+	649	3	FSM	ENSMUSG00000004947.16	ENSMUST00000199239.5	649	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	65	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTGTCAACTATGCCACC	8506	False	NA	NA	False	NA	NA	NA	136023700	136041050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136023821_136038867_136039211_136040864
ES_00043458	chr5	+	666	4	FSM	ENSMUSG00000006143.13	ENSMUST00000139549.2	671	4	-1	6	-1	-6	multi-exon	FALSE	canonical	1	1	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGCTTCATCTTACATA	4808	False	NA	NA	False	AATAAA	-14	NA	136088900	136093158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136089136_136090036_136090114_136090360_136090482_136092925
ES_00043466	chr5	+	625	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	-10	2	-10	-2	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTCTTCATCTATGGT	NA	False	NA	NA	False	NA	NA	NA	136948195	136962537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
ES_00043467	chr5	+	3897	4	FSM	ENSMUSG00000097908.8	ENSMUST00000181045.8	3967	4	70	0	35	0	multi-exon	FALSE	canonical	3	48	junction_3	24.0878023535196	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCAGCCTCGCTTTTTT	NA	False	NA	24	True	AATAAA	-13	NA	136948069	136965960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962592
ES_00043470	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ES_00043471	chr5	+	2415	19	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	303	-101	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_11	43.6249447274049	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGTGAGTCCAATATAAAG	NA	False	NA	21	True	AATAAA	-22	NA	137016632	137025401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019816_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
ES_00043475	chr5	+	4412	17	FSM	ENSMUSG00000029710.16	ENSMUST00000061244.15	4340	17	-80	8	-80	0	multi-exon	FALSE	canonical	3	265	junction_1	33.7925657504724	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGAGGGTGACTGGGA	NA	False	NA	19	True	AATAAA	-22	NA	137348290	137372782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360651_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
ES_00043476	chr5	+	4296	17	FSM	ENSMUSG00000029710.16	ENSMUST00000111055.9	4296	17	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	71.8852166651809	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGAGGGTGACTGGGA	NA	False	NA	19	True	AATAAA	-22	NA	137348433	137372782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360624_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
ES_00043478	chr5	+	6189	27	Fusion	ENSMUSG00000106237.2_ENSMUSG00000029714.12	novel	5440	24	NA	NA	-31	-2	multi-exon	TRUE	canonical	0	0	junction_23	18.6120467446132	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGTCTGCCAGCTTTT	NA	False	NA	27	True	AATAAA	-22	NA	137508483	137526195	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_137508883_137515646_137515874_137516743_137516875_137517139_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522915_137523104_137523192_137523354_137523433_137523622_137523694_137523822_137523913
ES_00043480	chr5	+	5438	24	FSM	ENSMUSG00000029714.12	ENSMUST00000031727.10	5440	24	0	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_20	18.481994507709	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGTCTGCCAGCTTTT	6706	False	NA	27	True	AATAAA	-22	NA	137517139	137526195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522912_137523104_137523192_137523354_137523433_137523622_137523691_137523822_137523913
ES_00043484	chr5	+	594	1	FSM	ENSMUSG00000105408.2	ENSMUST00000198801.2	580	1	32	-46	32	46	mono-exon	FALSE	NA	NA	NA	NA	NA	703	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAACAAACAAAAAACCAG	2876	False	NA	NA	False	AATAAA	-25	NA	137599886	137600480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137599900_137600500
ES_00043485	chr5	+	357	1	FSM	ENSMUSG00000081228.2	ENSMUST00000117679.2	336	1	77	-98	77	98	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCACACTTTAAATAAACAT	3569	False	NA	NA	False	NA	NA	NA	137613965	137614322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137614000_137614300
ES_00043488	chr5	+	4487	22	FSM	ENSMUSG00000029720.10	ENSMUST00000177545.2	4464	22	-23	0	-23	0	multi-exon	FALSE	canonical	3	204	junction_21	33.9740463834439	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	2215	False	NA	23	True	AATAAA	-15	NA	137627413	137641161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ES_00043489	chr5	+	1139	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	-103	65	0	0	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCACGGGTGCTTTCTTC	1101	False	NA	-39	True	NA	NA	NA	137639595	137641099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ES_00043490	chr5	+	1005	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTTGACAATAAATCA	1101	False	NA	-8	True	NA	NA	NA	137639595	137641130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ES_00043491	chr5	+	881	6	NNC	ENSMUSG00000079165.11	novel	1101	5	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	85.3580693314932	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCAGTGGGACAT	1297	False	NA	26	True	AATAAA	-18	NA	137639791	137641164	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_137639819_137639945_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ES_00043496	chr5	+	956	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
ES_00043502	chr5	+	8243	6	FSM	ENSMUSG00000029729.13	ENSMUST00000019660.11	8261	6	18	0	18	0	multi-exon	FALSE	canonical	2	7	junction_4	2.63818119165458	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTTAAATCCTCATTT	NA	False	NA	4	True	NA	NA	NA	138083363	138106084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138083494_138091181_138091695_138092253_138092402_138095328_138095421_138095714_138095842_138098851
ES_00043503	chr5	+	2250	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	2	0	2	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115166	138132475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ES_00043505	chr5	+	2149	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	-15	0	6	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115183	138132476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
ES_00043506	chr5	+	2215	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	-15	4	6	-4	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTATGTATTTTATT	NA	False	NA	51	True	TATAAA	-2	NA	138115183	138132523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
ES_00043509	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	1439.16262518466	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	False	NA	11	True	AATAAA	-12	NA	138159361	138162240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ES_00043510	chr5	+	1383	7	FSM	ENSMUSG00000019494.15	ENSMUST00000154867.2	1589	7	206	0	206	0	multi-exon	FALSE	canonical	3	4542	junction_3	177.440522116254	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGACCTGCTTGCTTCCAGT	NA	False	NA	9	True	NA	NA	NA	138159636	138162401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588
ES_00043513	chr5	+	1869	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	-21	7	-21	-7	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAGAAGTTAAGTGTAATA	5577	False	NA	NA	False	AAAACA	-5	NA	138185725	138192173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
ES_00043517	chr5	+	983	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	-3	0	-3	0	multi-exon	FALSE	canonical	3	386	junction_1	14	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACAGAATGGTTTG	NA	False	NA	38	True	AATAAA	-30	NA	138254089	138257660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138254596_138256916_138257035_138257301
ES_00043518	chr5	+	914	2	FSM	ENSMUSG00000085227.2	ENSMUST00000141454.2	624	2	30	-320	15	-9	multi-exon	FALSE	canonical	3	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAAGCATGAGGACACAA	6216	False	NA	NA	False	NA	NA	NA	138262345	138264914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138262364_138264018
ES_00043519	chr5	+	699	3	FSM	ENSMUSG00000085227.2	ENSMUST00000124298.2	743	3	20	24	-6	-24	multi-exon	FALSE	canonical	1	2	junction_2	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGTGTGCCACACA	6195	False	NA	NA	False	NA	NA	NA	138262324	138264899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138262364_138264018_138264268_138264488
ES_00043521	chr5	+	987	7	FSM	ENSMUSG00000036928.15	ENSMUST00000160729.8	989	7	2	0	2	0	multi-exon	FALSE	canonical	3	29	junction_1	37.2368545037485	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTTCCAGGGAAGCTTC	NA	False	NA	NA	False	NA	NA	NA	138278503	138289013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970
ES_00043522	chr5	+	4211	34	FSM	ENSMUSG00000036928.15	ENSMUST00000048028.15	4211	34	0	0	0	0	multi-exon	FALSE	canonical	2	72	junction_1	21.1857845161499	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278787	138310655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ES_00043523	chr5	+	808	6	ISM	ENSMUSG00000036928.15	ENSMUST00000159483.8	4456	31	25	21984	-5	0	5prime_fragment	FALSE	canonical	3	72	junction_1	25.8503384890798	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGGCTGGCCTTGAAC	NA	False	NA	NA	False	NA	NA	NA	138278812	138288668	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452
ES_00043524	chr5	+	4339	34	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	117	0	combination_of_known_junctions	TRUE	canonical	2	29	junction_1	25.0320272353535	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATAGGTATGACTTGAG	NA	False	NA	13	True	AATAAA	-13	NA	138278618	138310648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ES_00043525	chr5	+	4080	34	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	27	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	28.2979360803849	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278844	138310655	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_138278883_138280166_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ES_00043532	chr5	+	1801	1	FSM	ENSMUSG00000075585.4	ENSMUST00000100518.3	5521	1	-266	3986	-266	-3986	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGTGACCCGACGGCAA	3549	False	NA	NA	False	NA	NA	NA	138980544	138982345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138980500_138982300
ES_00043534	chr5	+	3983	22	FSM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	-129	-1246	-86	0	multi-exon	FALSE	canonical	3	224	junction_6	196.102233969428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186305	139235550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043535	chr5	+	4081	22	FSM	ENSMUSG00000036817.15	ENSMUST00000110884.9	3955	22	-126	0	-103	0	multi-exon	FALSE	canonical	3	224	junction_8	208.642464528521	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186288	139235550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043536	chr5	+	3866	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	-109	-43	-103	-2	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGTCTTATCTCTG	NA	False	NA	31	True	AATAAA	-17	NA	139186288	139235593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043537	chr5	+	4133	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	0	1	0	-1	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGTCTTATCTCTGC	NA	False	NA	32	True	AATAAA	-18	NA	139186391	139235594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043542	chr5	+	4049	23	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_3	245.758666813705	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186423	139235550	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211022_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043543	chr5	+	3800	21	NIC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	224	junction_6	225.20792614826	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGTCTTATCTCTGC	NA	False	NA	32	True	AATAAA	-18	NA	139186421	139235594	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043544	chr5	+	3767	19	NIC	ENSMUSG00000036817.15	novel	3714	20	NA	NA	-103	-2	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	224.162701328001	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGTCTTATCTCTG	NA	False	NA	31	True	AATAAA	-17	NA	139186288	139235593	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00043551	chr5	+	965	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	-11	0	-11	0	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317652	140323892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ES_00043557	chr5	+	2930	19	NNC	ENSMUSG00000056076.14	novel	2945	19	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_18	709.07520409455	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCTGTCCTGATCTCT	NA	False	NA	14	True	AATAAA	-15	NA	140405093	140429114	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428189_140428628
ES_00043562	chr5	+	3327	14	NIC	ENSMUSG00000000148.18	novel	3333	14	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	24.0315374643282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690795	140705134	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698657_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ES_00043563	chr5	+	3299	14	NNC	ENSMUSG00000000148.18	novel	3333	14	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	23.2126776216546	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690796	140705134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_140690831_140691707_140691852_140695892_140696048_140697263_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ES_00043564	chr5	+	3447	14	FSM	ENSMUSG00000000148.18	ENSMUST00000100505.3	3431	14	-16	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	24.1966793164027	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690804	140705134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_140690984_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ES_00043580	chr5	+	4384	5	FSM	ENSMUSG00000029587.17	ENSMUST00000075916.8	4384	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	16.7835484924971	735	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTATGCTTCCTTAAGC	NA	False	NA	19	True	AATGAA	-11	NA	143221001	143233711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143221135_143222008_143222072_143225708_143225906_143226074_143226171_143229816
ES_00043585	chr5	+	4658	15	FSM	ENSMUSG00000039206.14	ENSMUST00000045593.12	4651	15	-7	0	-7	0	multi-exon	FALSE	canonical	3	16	junction_4	5.5272977491866	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAAAAATCTC	NA	False	NA	NA	False	AGTAAA	-38	NA	143450331	143491697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143450532_143452707_143452860_143458701_143458874_143460367_143460627_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
ES_00043587	chr5	+	919	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCGGTGTTTTCCTAATG	NA	False	NA	9	True	AATAAA	-14	NA	143534500	143537693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143534890_143537163
ES_00043592	chr5	+	6141	14	FSM	ENSMUSG00000079109.12	ENSMUST00000141942.8	6157	14	0	16	0	-16	multi-exon	FALSE	canonical	3	72	junction_4	18.9689874586679	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTACTAAGGAAATTAT	NA	False	NA	NA	False	NA	NA	NA	143846781	143870770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865861_143865998_143866169_143867833
ES_00043601	chr5	+	12344	70	FSM	ENSMUSG00000045482.17	ENSMUST00000038980.13	12344	70	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_14	31.7766173962632	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAGAATAAATATTTTAT	NA	False	NA	NA	False	NA	NA	NA	144707898	144796561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_144708060_144708417_144708468_144713912_144714024_144714690_144714796_144716793_144716878_144718785_144718843_144719005_144719132_144720797_144720876_144721067_144721157_144722278_144722376_144723441_144723581_144724469_144724549_144726167_144726403_144727630_144727998_144728083_144728179_144728902_144729098_144729822_144730015_144730719_144730886_144731410_144731668_144733770_144733972_144735057_144735210_144737603_144737804_144739677_144739896_144739972_144740171_144740848_144741110_144741509_144741672_144741793_144741891_144742497_144742620_144742863_144743035_144744132_144744202_144748704_144748825_144750243_144750364_144751218_144751384_144751480_144751663_144752160_144752360_144752741_144752871_144753121_144753389_144754406_144754614_144754744_144754904_144755001_144755131_144756511_144756623_144757057_144757205_144758582_144758797_144759500_144759627_144761266_144761414_144762028_144762232_144762683_144762806_144763329_144763544_144765276_144765457_144767715_144767863_144769257_144769378_144769715_144770004_144770106_144770245_144770966_144771080_144772797_144772934_144773941_144774134_144776210_144776407_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782278_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ES_00043602	chr5	+	4781	29	FSM	ENSMUSG00000045482.17	ENSMUST00000132347.8	4781	29	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	15.3215534460446	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAATAACGTCTGTTCGT	NA	False	NA	NA	False	NA	NA	NA	144741538	144771321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_144741672_144741793_144741891_144742497_144742620_144742863_144743035_144744132_144744202_144748704_144748825_144750243_144750364_144751218_144751384_144751480_144751663_144752160_144752360_144752741_144752871_144753121_144753389_144754406_144754614_144754744_144754904_144755001_144755131_144756511_144756623_144757057_144757205_144758582_144758797_144759500_144759627_144761266_144761414_144762028_144762232_144762683_144762806_144763329_144763544_144765276_144765457_144767715_144767863_144769257_144769378_144769715_144770004_144770106_144770245_144770966
ES_00043604	chr5	+	3101	2	FSM	ENSMUSG00000045482.17	ENSMUST00000198524.2	3101	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTGTGCCCTATTTTT	3366	False	NA	NA	False	AATAAA	-15	NA	144792392	144796587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_144794390_144795483
ES_00043605	chr5	+	1646	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	-14	0	-14	0	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020625	145045571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ES_00043613	chr5	+	808	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	-158	91	-112	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACCCAGGGGGGGAAGCA	NA	False	NA	-75	True	NA	NA	NA	145077059	145084793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ES_00043614	chr5	+	893	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	-53	88	0	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACCCAGGGGGGGAAGCA	NA	False	NA	-75	True	NA	NA	NA	145077171	145084793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ES_00043617	chr5	+	1756	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104056	145118850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
ES_00043619	chr5	+	2970	6	FSM	ENSMUSG00000029625.17	ENSMUST00000160437.2	2971	6	0	1	0	0	multi-exon	FALSE	canonical	3	673	junction_5	66.0502838752416	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	2699	False	NA	22	True	ATTAAA	-14	NA	145107352	145118850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145115739_145117945
ES_00043620	chr5	+	3794	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	937	False	NA	10	True	ATTAAA	-15	NA	145141371	145158560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
ES_00043621	chr5	+	378	4	FSM	ENSMUSG00000055991.16	ENSMUST00000160162.2	378	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	31.5946549628608	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGGGCAACTTAGAGT	4943	False	NA	NA	False	NA	NA	NA	145145377	145155106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145145527_145148555_145148639_145149314_145149451_145155096
ES_00043622	chr5	+	1765	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGCTTGATGTCTTG	1291	False	NA	NA	False	AATAAA	-16	NA	145168524	145175132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
ES_00043623	chr5	+	1207	4	FSM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	-44	-566	-2	0	multi-exon	FALSE	canonical	3	16	junction_2	194.635271440941	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1289	False	NA	NA	False	AATACA	-16	NA	145168522	145174658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859
ES_00043625	chr5	+	4248	5	FSM	ENSMUSG00000007812.17	ENSMUST00000199322.5	4157	5	-91	0	-51	0	multi-exon	FALSE	canonical	3	27	junction_3	175.330402383614	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTAGACTCTTTGTTTTGA	1240	False	NA	15	True	NA	NA	NA	145168473	145184111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145179729_145179835_145180384
ES_00043627	chr5	+	3770	6	Fusion	ENSMUSG00000070420.5_ENSMUSG00000104682.2	novel	1796	5	NA	NA	18	1864	multi-exon	FALSE	canonical	3	40	junction_2	6.67532770731145	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTAGGTGGTGGCAGCTCA	2791	False	NA	NA	False	NA	NA	NA	145217327	145229952	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_145217438_145220161_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
ES_00043628	chr5	+	2818	6	NNC	ENSMUSG00000070420.5	novel	1799	5	NA	NA	72	962	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	19.0473095212946	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTAACTTTCCTGTAAAT	2845	False	NA	9	True	AATAAA	-22	NA	145217381	145229050	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_145217438_145220161_145220595_145223117_145223320_145224117_145224210_145225103_145225228_145227139
ES_00043629	chr5	+	2894	12	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	36.2587122616901	1382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	AATAAA	-20	NA	146167993	146239684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_146168631_146196314_146196391_146205024_146205097_146208404_146208546_146220438_146220497_146222917_146223050_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ES_00043630	chr5	+	2973	13	FSM	ENSMUSG00000029635.16	ENSMUST00000031640.15	2973	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	19.7545704978761	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	AATAAA	-20	NA	146168097	146239684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ES_00043633	chr5	+	4919	11	NNC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	253	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	47	junction_10	30.251611527322	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	15	True	AATAAA	-19	NA	146322047	146410425	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029_146409754_146409777
ES_00043636	chr5	+	948	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	-49	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146769955	146772795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ES_00043637	chr5	+	1391	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	-325	1	-13	0	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146769686	146772795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ES_00043639	chr5	+	1433	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	-7	0	0	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGACTCTTTGCTGTT	NA	False	NA	15	True	ATTAAA	-15	NA	146885507	146892416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
ES_00043641	chr5	+	1137	3	FSM	ENSMUSG00000029642.12	ENSMUST00000110557.5	1137	3	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	26.5	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTCCTCTTTTGGGTGT	NA	False	NA	16	True	AATAAA	-17	NA	147014155	147048171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_147014504_147038038_147038114_147047457
ES_00043651	chr5	+	5051	19	FSM	ENSMUSG00000029647.16	ENSMUST00000031651.15	5048	19	-3	0	-3	0	multi-exon	FALSE	canonical	3	100	junction_5	15.1677858764904	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTGTTTTTATTACC	NA	False	NA	NA	False	AATAAA	-23	NA	147366967	147485312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_147367820_147387462_147387585_147390061_147390129_147391927_147391999_147424920_147425069_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415_147482546_147483174
ES_00043652	chr5	+	5541	19	FSM	ENSMUSG00000029647.16	ENSMUST00000176600.8	5541	19	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	42.4659631315641	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTATTTCTGTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	147367262	147485306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_147367820_147387462_147387585_147390061_147390129_147391927_147391999_147403745_147403908_147424920_147425069_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415
ES_00043657	chr5	+	4152	18	FSM	ENSMUSG00000029647.16	ENSMUST00000176596.8	4152	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	41.0240034386149	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTATTTCTGTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	147390098	147485306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_147390129_147391927_147391999_147424920_147425069_147439894_147440013_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415_147482546_147483174
ES_00043662	chr5	+	1009	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAATTATTGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	148239983	148250810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
ES_00043664	chr5	+	641	3	ISM	ENSMUSG00000029651.17	ENSMUST00000146425.2	1131	8	37922	93	40	-1	3prime_fragment	FALSE	canonical	3	103	junction_2	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGAGGCTCCTCCTCTGG	NA	False	NA	14	True	ATTAAA	-22	NA	148240023	148250269	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_148240413_148243439_148243538_148250115
ES_00043668	chr5	+	3428	11	NIC	ENSMUSG00000041264.17	novel	3827	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	144.908384850567	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTTTGTTGGTTTCAT	NA	False	NA	10	True	ATTAAA	-10	NA	149121369	149152238	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ES_00043669	chr5	+	3757	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149121369	149152244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ES_00043670	chr5	+	3608	9	FSM	ENSMUSG00000041264.17	ENSMUST00000119685.8	3604	9	-4	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	126.885713833355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121472	149152240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149121617_149124517_149124645_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ES_00043671	chr5	+	3827	10	FSM	ENSMUSG00000041264.17	ENSMUST00000122160.8	3827	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	142.108287696738	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121472	149152240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ES_00043672	chr5	+	3151	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	-3	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	149121472	149152241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ES_00043673	chr5	+	2931	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121525	149152243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ES_00043679	chr5	+	1509	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	-51	-1159	-51	1159	multi-exon	FALSE	canonical	3	13	junction_1	0	752	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGCTGCACTCAAGGGT	NA	False	NA	91	True	NA	NA	NA	149565023	149572414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149565217_149571098
ES_00043688	chr5	+	959	3	FSM	ENSMUSG00000041147.11	ENSMUST00000200686.4	937	3	-22	0	-22	0	multi-exon	FALSE	canonical	3	12	junction_1	32.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAGAAAAAAAAAGC	348	False	NA	NA	False	NA	NA	NA	150446072	150453305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_150446556_150446639_150446745_150452934
ES_00043694	chr5	+	209	2	Genic_Genomic	ENSMUSG00000041147.11	novel	1742	1	NA	NA	-33	96200	multi-exon	TRUE	canonical	0	0	junction_1	0	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTTTTAATTTATAAGT	NA	False	NA	NA	False	NA	NA	NA	150492019	150589994	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_150492054_150589819
ES_00043695	chr5	+	7417	35	FSM	ENSMUSG00000034021.16	ENSMUST00000016569.11	7417	35	0	0	0	0	multi-exon	FALSE	canonical	2	103	junction_31	23.7978256399679	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTGCTAGAGAAAG	NA	False	NA	10	True	AATAAA	-39	NA	150597203	150734155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720136_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ES_00043696	chr5	+	7442	35	FSM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	0	-844	0	19	multi-exon	FALSE	canonical	2	95	junction_31	24.4340259944524	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGTTTTGTGATTTTTA	NA	False	NA	29	True	AATATA	-16	NA	150597203	150734174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ES_00043697	chr5	+	7550	34	NIC	ENSMUSG00000034021.16	novel	7417	35	NA	NA	25	309	combination_of_known_splicesites	FALSE	canonical	2	37	junction_28	30.7733501869126	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTTTGTGGTATTTAC	NA	False	NA	NA	False	NA	NA	NA	150597316	150734464	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717732_150717879_150720035_150720136_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ES_00043698	chr5	+	7315	35	FSM	ENSMUSG00000034021.16	ENSMUST00000038900.15	7315	35	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_32	36.1914961622709	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATATTTTTATGTGACT	NA	False	NA	-13	True	AATAAA	-16	NA	150597291	150734132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042_150724483_150724583_150724695_150729038_150729178_150731277
ES_00043699	chr5	+	6322	35	NIC	ENSMUSG00000034021.16	novel	7315	35	NA	NA	89	-96	combination_of_known_junctions	FALSE	canonical	2	6	junction_32	35.7960026571176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTACAGCATAAGTAATAA	NA	False	NA	NA	False	NA	NA	NA	150597380	150733234	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720136_150724042_150724483_150724583_150724695_150729038_150729178_150731277
ES_00043701	chr5	+	2821	17	FSM	ENSMUSG00000034021.16	ENSMUST00000110486.2	2900	17	79	0	79	0	multi-exon	FALSE	canonical	2	105	junction_15	23.7110700675866	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTCCCCTTTTTGTC	5936	False	NA	NA	False	AATAAA	-28	NA	150679846	150720889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035
ES_00043702	chr5	-	2336	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	32	0	32	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1506	False	NA	-9	True	AATAAA	-21	NA	3646553	3633977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
ES_00043703	chr5	-	2545	5	FSM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_1	62.6592969957372	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTATTTTGGATTTTTAA	NA	False	NA	52	True	ATTAAA	-17	NA	3697934	3689960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3697379
ES_00043704	chr5	-	1281	4	FSM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	0	-3	0	3	multi-exon	FALSE	canonical	3	421	junction_2	22.2910046630673	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTACTTTATGCATACA	NA	False	NA	-5	True	NA	NA	NA	3697806	3693073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3693742_3694880_3694941_3696783_3696910_3697379
ES_00043705	chr5	-	6426	20	FSM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_3	19.1839036868105	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCATTCTCTGCCTTCTG	NA	False	NA	-5	True	AATAAA	-18	NA	3852925	3739999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3743497_3743771_3743906_3744778_3744876_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ES_00043706	chr5	-	6625	20	NIC	ENSMUSG00000040351.12	novel	6426	20	NA	NA	-181	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_14	13.2648286332828	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCATTCTCTGCCTTCTG	NA	False	NA	-5	True	AATAAA	-18	NA	3853106	3739999	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_3743497_3743771_3743906_3744778_3744894_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ES_00043707	chr5	-	2464	10	ISM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	-181	32164	-181	11516	5prime_fragment	FALSE	canonical	3	68	junction_4	17.1269767715535	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTCTTTTTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	3853106	3772163	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ES_00043708	chr5	-	1870	6	FSM	ENSMUSG00000040351.12	ENSMUST00000199763.2	1569	6	-319	18	-181	-18	multi-exon	FALSE	canonical	3	68	junction_5	15.4324333790883	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCATAATGAAATACTAA	NA	False	NA	NA	False	TTTAAA	-2	NA	3853106	3783697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ES_00043709	chr5	-	2445	2	FSM	ENSMUSG00000040429.7	ENSMUST00000117463.2	2413	2	-29	-3	-3	0	multi-exon	FALSE	canonical	3	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTATTTTGTATGTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	3943936	3940580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3941898_3942808
ES_00043710	chr5	-	1378	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	0	-2	0	2	multi-exon	FALSE	canonical	3	112	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTGTATGTATTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	3943933	3940578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3941898_3943874
ES_00043711	chr5	-	3931	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATTTTCTTTGCCAAT	NA	False	NA	-22	True	ATTAAA	-22	NA	4154746	4131144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ES_00043712	chr5	-	4192	1	FSM	ENSMUSG00000044674.7	ENSMUST00000054294.7	4197	1	0	5	0	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACATTTTTCTGTGTGTGC	NA	False	NA	NA	False	AATAAA	-23	NA	4808035	4803843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_4803800_4808000
ES_00043713	chr5	-	676	6	FSM	ENSMUSG00000028926.16	ENSMUST00000153331.6	4150	6	-48	3522	10	-3522	multi-exon	FALSE	canonical	0	0	junction_4	2.31516738055805	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAGCACGCCAACATCG	NA	False	NA	NA	False	GATAAA	-45	NA	5430241	5185397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5185414_5245277_5245358_5277163_5277259_5298982_5299229_5423457_5423490_5430034
ES_00043714	chr5	-	2994	11	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	0	36659	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.5507763941119	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAACAAACCAAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	5609538	5550794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_5550820_5587456_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ES_00043715	chr5	-	3597	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564873	5555108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
ES_00043716	chr5	-	3822	4	FSM	ENSMUSG00000046798.15	ENSMUST00000115445.8	3477	4	-231	-114	-3	0	multi-exon	FALSE	canonical	3	7	junction_3	28.2842712474619	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564961	5555108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564627
ES_00043717	chr5	-	2994	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	1	-23	1	23	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTCGTTCTAGTGCATG	NA	False	NA	NA	False	GATAAA	-42	NA	5609537	5587430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ES_00043718	chr5	-	3003	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609514	5587453	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ES_00043721	chr5	-	4862	23	FSM	ENSMUSG00000040473.16	ENSMUST00000054865.13	4956	23	7	87	0	-83	multi-exon	FALSE	canonical	2	4	junction_19	2.58132197536376	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAGTTACCAGAGACAAA	NA	False	NA	NA	False	NA	NA	NA	5714232	5629364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5631367_5631903_5632009_5632441_5632529_5634650_5634849_5636355_5636433_5637140_5637279_5639119_5639313_5643771_5643854_5645920_5646040_5654273_5654393_5663685_5663851_5667168_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749_5675928_5676008_5676159_5690128_5690228_5694423_5694501_5696935_5697046_5699789_5699856_5707787_5707848_5713907
ES_00043723	chr5	-	9890	6	FSM	ENSMUSG00000015653.14	ENSMUST00000015797.11	3657	6	0	-6233	0	-427	multi-exon	FALSE	canonical	3	20	junction_3	7.4565407529229	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGCCTACCTACATCTC	5284	False	NA	NA	False	NA	NA	NA	5744067	5715257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5743957
ES_00043724	chr5	-	10256	6	FSM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	88	64	43	-62	multi-exon	FALSE	canonical	3	8	junction_5	11.3384302264467	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTGAGACTTCTGTCCCT	4861	False	NA	NA	False	NA	NA	NA	5744490	5714892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
ES_00043725	chr5	-	1106	4	NIC	ENSMUSG00000015652.10	novel	1230	5	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	12.684198393627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTTTTAGTTTGTATCAC	NA	False	NA	NA	False	AATAAA	-17	NA	5799326	5786325	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_5786674_5789795_5789961_5790349_5790863_5799246
ES_00043726	chr5	-	1237	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	0	-7	0	7	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAACTGTTTATTTATTT	NA	False	NA	NA	False	AATAAA	-33	NA	5799326	5786309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
ES_00043727	chr5	-	1941	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGTCCAAGAAGAAGGTG	NA	False	NA	-80	True	NA	NA	NA	5833555	5831614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5831600_5833600
ES_00043728	chr5	-	9217	29	NIC	ENSMUSG00000040537.18	novel	9161	30	NA	NA	-91	-3	combination_of_known_junctions	FALSE	canonical	3	20	junction_18	5.47955383257448	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCACAGCTCTCTTTCA	5970	False	NA	-6	True	AATAAA	-16	NA	8418251	8122354	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ES_00043730	chr5	-	3445	31	NIC	ENSMUSG00000040537.18	novel	9161	30	NA	NA	2	-314	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	9.40212741883453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGGCTTTGAGAGGCCA	6142	False	NA	NA	False	NA	NA	NA	8418079	8128152	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_8128707_8132145_8132270_8137981_8138069_8140141_8140253_8142339_8142407_8142730_8142832_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ES_00043731	chr5	-	2401	12	FSM	ENSMUSG00000002297.17	ENSMUST00000002368.16	2401	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	130.994164276048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATAATTTCAAGTGAG	NA	False	NA	NA	False	AATAAA	-25	NA	8472680	8446972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454914_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ES_00043732	chr5	-	2402	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCTGAGAATAAAAATGAA	NA	False	NA	NA	False	AATAAA	-22	NA	8472716	8447010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ES_00043733	chr5	-	2509	10	FSM	ENSMUSG00000002297.17	ENSMUST00000166364.8	2509	10	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	51.6858984517579	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGTTGTCTAGTTGTATTG	NA	False	NA	NA	False	TATAAA	-4	NA	8472681	8451660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ES_00043735	chr5	-	3678	10	FSM	ENSMUSG00000040570.15	ENSMUST00000047485.15	3677	10	0	-1	0	1	multi-exon	FALSE	canonical	3	27	junction_2	10.9352753469485	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTCTTTTTCCTTGAC	NA	False	NA	2	True	ATTAAA	-20	NA	8672952	8540332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8542590_8544783_8544906_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
ES_00043736	chr5	-	3901	11	FSM	ENSMUSG00000040570.15	ENSMUST00000115378.2	1891	11	-76	-1934	-76	1	multi-exon	FALSE	canonical	3	15	junction_2	15.6920361967464	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTCTTTTTCCTTGAC	NA	False	NA	2	True	ATTAAA	-20	NA	8673028	8540332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8542590_8544783_8544906_8562260_8562408_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
ES_00043737	chr5	-	585	1	FSM	ENSMUSG00000104535.2	ENSMUST00000199172.2	4108	1	2031	1492	2031	-1492	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCTGTGGGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	8783737	8783152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8783200_8783700
ES_00043738	chr5	-	3485	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	151	-640	-131	640	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTCTGACAGGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	9047173	9015392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ES_00043739	chr5	-	2298	5	FSM	ENSMUSG00000003623.5	ENSMUST00000157024.2	2746	5	332	116	332	-116	multi-exon	FALSE	canonical	3	180	junction_2	24.6069095987286	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTAATAAAAGCTCACAT	NA	False	NA	NA	False	NA	NA	NA	9046710	9036296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451
ES_00043740	chr5	-	3806	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGAATTCCTTGCT	NA	False	NA	66	True	NA	NA	NA	9211776	9168800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ES_00043741	chr5	-	3502	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	0	-4	0	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTGAGCCATGCAATTA	NA	False	NA	-1	True	AATAAA	-24	NA	9211749	9168867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ES_00043742	chr5	-	454	1	FSM	ENSMUSG00000080875.5	ENSMUST00000118351.3	454	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGGCCGTGGCTCCCA	NA	False	NA	NA	False	NA	NA	NA	9311388	9310934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_9310900_9311400
ES_00043743	chr5	-	513	1	FSM	ENSMUSG00000105854.2	ENSMUST00000197212.2	763	1	145	105	145	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCCAAAGAAAAGCACCAG	NA	False	NA	NA	False	AATGAA	-3	NA	12529450	12528937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_12528900_12529400
ES_00043744	chr5	-	1002	1	FSM	ENSMUSG00000096810.2	ENSMUST00000179228.2	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	False	NA	NA	False	NA	NA	NA	13093401	13092399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_13092400_13093400
ES_00043745	chr5	-	319	1	FSM	ENSMUSG00000062038.6	ENSMUST00000078246.6	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGCCTTATTTATTAC	NA	False	NA	NA	False	AAAAAG	-17	NA	13171733	13171414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_13171400_13171700
ES_00043746	chr5	-	1075	1	FSM	ENSMUSG00000059179.7	ENSMUST00000073014.7	1075	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAAAACAGAAACGGC	NA	False	NA	NA	False	NA	NA	NA	16936068	16934993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_16935000_16936100
ES_00043747	chr5	-	3264	8	FSM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	-129	0	-129	0	multi-exon	FALSE	canonical	3	135	junction_3	12.7711409363583	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCTATTGACTGAATTT	NA	False	NA	-7	True	AATAAA	-21	NA	18565482	18470132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
ES_00043748	chr5	-	1402	3	FSM	ENSMUSG00000097626.6	ENSMUST00000197496.2	756	3	-383	-263	4	263	multi-exon	FALSE	canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGAAACTAAGGCTCTA	NA	False	NA	NA	False	AATAAA	-9	NA	19431549	19408027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_19408924_19415225_19415321_19431138
ES_00043749	chr5	-	4712	19	NNC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	0	20430	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	59.1807494977135	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGATGACATGACTCCTAAT	NA	False	NA	NA	False	NA	NA	NA	21087075	20943230	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_20943258_20963768_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043750	chr5	-	4847	18	FSM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	0	-7	0	7	multi-exon	FALSE	canonical	3	159	junction_9	38.2607155309617	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCATAGTTTGTTTAAGT	NA	False	NA	3	True	AATAAA	-20	NA	21087122	20963653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043751	chr5	-	4757	18	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	53	junction_9	51.0853143531539	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAGTTTGTTTAAGTC	NA	False	NA	4	True	AATAAA	-21	NA	21087075	20963652	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043752	chr5	-	4697	17	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	-21	2	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	58.3812563563855	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCACTTCATAGTTTGTT	NA	False	NA	-2	True	AATAAA	-15	NA	21087143	20963658	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043753	chr5	-	621	5	FSM	ENSMUSG00000039987.16	ENSMUST00000124431.8	621	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	80.0468612751306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGTTACACTGTGCGG	NA	False	NA	NA	False	NA	NA	NA	21010705	20987385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21010652
ES_00043754	chr5	-	2054	9	FSM	ENSMUSG00000039987.16	ENSMUST00000139325.8	2044	9	0	-10	0	10	multi-exon	FALSE	canonical	3	161	junction_1	42.4352447854375	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTATTTATGAAAAAAATCA	NA	False	NA	NA	False	AATATA	-31	NA	21087075	20993734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043755	chr5	-	2399	8	NNC	ENSMUSG00000039987.16	novel	2044	9	NA	NA	0	434	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_3	85.6618887468253	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTGTAGTTTAATTT	NA	False	NA	-14	True	TTTAAA	-1	NA	21087075	20997865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_20999480_21006899_21007065_21008182_21008315_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043756	chr5	-	2501	8	FSM	ENSMUSG00000039987.16	ENSMUST00000140147.2	2000	8	-67	-434	-21	434	multi-exon	FALSE	canonical	3	167	junction_2	38.2152870362805	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTGTAGTTTAATTT	NA	False	NA	-14	True	TTTAAA	-1	NA	21087143	20997865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00043757	chr5	-	5550	8	FSM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	8.29802041797578	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCTTTTTACCTTTGTT	NA	False	NA	-18	True	AATAAA	-18	NA	21156820	21098025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21101703_21101790_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
ES_00043758	chr5	-	4905	7	FSM	ENSMUSG00000039968.10	ENSMUST00000196780.5	7651	7	1544	1202	1544	-1202	multi-exon	FALSE	canonical	3	36	junction_5	8.0363756341608	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAACTTAAGTAATTGTC	NA	False	NA	NA	False	NA	NA	NA	21159852	21101790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
ES_00043759	chr5	-	3392	17	NIC	ENSMUSG00000028771.14	novel	3280	18	NA	NA	-184	37	combination_of_known_junctions	FALSE	canonical	3	8	junction_16	18.4483019205021	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTATTAACAAAGTATAT	NA	False	NA	36	True	AAAAAG	-2	NA	21261093	21191605	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21260646
ES_00043760	chr5	-	3285	18	FSM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	0	-5	0	5	multi-exon	FALSE	canonical	3	41	junction_17	13.1951023733656	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGTTTTTTTTTAACT	NA	False	NA	4	True	ATTAAA	-30	NA	21260909	21191637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21234773_21234883_21260646
ES_00043761	chr5	-	501	1	FSM	ENSMUSG00000106294.2	ENSMUST00000199822.2	501	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATACCAAAGAGGGAAA	NA	False	NA	NA	False	AATGAA	-34	NA	21819492	21818991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21819000_21819500
ES_00043763	chr5	-	4012	5	FSM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	0	-58	0	58	multi-exon	FALSE	canonical	3	8	junction_4	48.8108594474631	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGGTATTGGGTTCAG	NA	False	NA	NA	False	NA	NA	NA	21906392	21867840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21905972
ES_00043764	chr5	-	2424	16	FSM	ENSMUSG00000029014.15	ENSMUST00000115193.8	2416	16	0	-8	0	3	multi-exon	FALSE	canonical	3	849	junction_10	94.8316871561868	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTCATCATTTAAAAG	NA	False	NA	6	True	AATAAA	-33	NA	21990182	21962261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ES_00043765	chr5	-	2136	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	-3	0	3	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTCATCATTTAAAAG	NA	False	NA	6	True	AATAAA	-33	NA	21990249	21962261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ES_00043766	chr5	-	3758	16	FSM	ENSMUSG00000029014.15	ENSMUST00000132962.8	3758	16	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_10	94.8326244847556	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTTTCACTTGGAATTA	NA	False	NA	-11	True	AATAAA	-16	NA	21990168	21962278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ES_00043767	chr5	-	1013	6	FSM	ENSMUSG00000029014.15	ENSMUST00000147987.2	1011	6	0	-2	0	2	multi-exon	FALSE	canonical	3	855	junction_1	59.5449410109709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGAGCCATCTTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	21990152	21978517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ES_00043768	chr5	-	1218	1	FSM	ENSMUSG00000105081.2	ENSMUST00000198877.2	226	1	5	-997	5	997	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGCTTTGCTCAAAGGT	NA	False	NA	NA	False	AATAAA	-26	NA	22677985	22676767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22676800_22678000
ES_00043769	chr5	-	2109	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	71	-77	0	73	multi-exon	TRUE	canonical	3	527	junction_10	41.6678895284064	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAACTGAATGGGTTTAA	NA	False	NA	70	True	NA	NA	NA	22755302	22691409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ES_00043771	chr5	-	689	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	-78	-56	-78	56	mono-exon	FALSE	NA	NA	NA	NA	NA	399	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAACAAACAAACAAAAAAA	NA	False	NA	NA	False	AATAAA	-40	NA	22818258	22817569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22817600_22818300
ES_00043772	chr5	-	1443	1	FSM	ENSMUSG00000106181.2	ENSMUST00000199146.2	1159	1	40	-324	40	324	mono-exon	FALSE	NA	NA	NA	NA	NA	632	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAATTGCAATTACCTTC	NA	False	NA	NA	False	NA	NA	NA	22899677	22898234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22898200_22899700
ES_00043774	chr5	-	2451	1	FSM	ENSMUSG00000073147.4	ENSMUST00000101522.3	2110	1	-350	9	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTGTATAATTGTGGA	NA	False	NA	NA	False	ATTAAA	-5	NA	23639267	23636816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_23636800_23639300
ES_00043776	chr5	-	5450	16	NIC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	0	-998	combination_of_known_junctions	FALSE	canonical	3	183	junction_8	31.7487357578569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTATTAAACATATTTTCA	NA	False	NA	NA	False	TTTAAA	-35	NA	23880965	23709259	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
ES_00043779	chr5	-	1038	1	FSM	ENSMUSG00000105987.5	ENSMUST00000198331.2	981	1	-60	3	-60	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACTATTCTAGTCTGAGG	NA	False	NA	NA	False	NA	NA	NA	23904334	23903296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_23903300_23904300
ES_00043780	chr5	-	3422	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	0	-15	0	15	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCCCTGGCTAACGGGCA	NA	False	NA	7	True	AATAAA	-39	NA	23988709	23945630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
ES_00043783	chr5	-	1066	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	59	0	-59	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTCCTGGGACTTTCTG	NA	False	NA	NA	False	AAGAAA	-33	NA	24049159	24044000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24044827_24046707_24046757_24048968
ES_00043784	chr5	-	5940	12	NIC	ENSMUSG00000028995.15	novel	2195	11	NA	NA	16	-1	combination_of_known_junctions	TRUE	canonical	3	47	junction_11	7.3033446430527	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTCTTCTAGATCATTC	NA	False	NA	NA	False	AATAAA	-16	NA	24235672	24165929	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_24170357_24171131_24171430_24184485_24184646_24185484_24185573_24188147_24188265_24190742_24190839_24191135_24191252_24191731_24191813_24192882_24193063_24196733_24196836_24204938_24205018_24235476
ES_00043785	chr5	-	2195	11	FSM	ENSMUSG00000028995.15	ENSMUST00000115109.2	2195	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	6.65131565932636	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCCCTGGGAAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	24205017	24169478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24170357_24171131_24171430_24184485_24184646_24185484_24185573_24188147_24188265_24190742_24190839_24191135_24191252_24191731_24191813_24192882_24193063_24196733_24196836_24204938
ES_00043786	chr5	-	374	1	FSM	ENSMUSG00000105866.2	ENSMUST00000199216.2	526	1	-20	172	-20	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCAAGCTTTGGGATCT	NA	False	NA	NA	False	NA	NA	NA	24215430	24215056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24215100_24215400
ES_00043787	chr5	-	349	1	FSM	ENSMUSG00000106133.2	ENSMUST00000197957.2	349	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCCTTGCTGGGCTAG	5915	False	NA	NA	False	NA	NA	NA	24323662	24323313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24323300_24323700
ES_00043789	chr5	-	4348	15	FSM	ENSMUSG00000038319.15	ENSMUST00000036092.10	4221	15	-120	-7	-120	7	multi-exon	FALSE	canonical	3	15	junction_8	4.79157423749955	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTGTATCTCATGTTTA	NA	False	NA	1	True	NA	NA	NA	24556722	24524579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660_24537111_24537889_24538055_24553308_24553540_24556205
ES_00043790	chr5	-	3158	9	ISM	ENSMUSG00000038295.15	ENSMUST00000059401.7	3902	14	3007	250	-1170	189	3prime_fragment	FALSE	canonical	3	11	junction_1	5.09748712602592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGTCTGGGACTCACT	8984	False	NA	NA	False	NA	NA	NA	24594134	24589428	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686
ES_00043791	chr5	-	490	3	FSM	ENSMUSG00000038295.15	ENSMUST00000128831.2	490	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	13.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCACTCCTGACCCCAT	9294	False	NA	NA	False	NA	NA	NA	24592964	24592102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24592126_24592384_24592542_24592654
ES_00043792	chr5	-	2072	12	FSM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	0	-13	0	13	multi-exon	TRUE	canonical	0	0	junction_3	52.4982486917657	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGCCTATAATCTCAATA	NA	False	NA	2	True	TATAAA	-18	NA	24628528	24623225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ES_00043796	chr5	-	2552	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650185	24646037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
ES_00043797	chr5	-	1800	10	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	6	1	combination_of_known_junctions	FALSE	canonical	3	73	junction_5	369.485762100601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTAAGTCTTGTTTCT	NA	False	NA	-7	True	NA	NA	NA	24650178	24646039	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647099_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ES_00043804	chr5	-	1329	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	0	4	0	-4	multi-exon	FALSE	canonical	3	68	junction_2	11	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGTGTCTGTGTGTTGC	NA	False	NA	0	True	ATTAAA	-22	NA	24652852	24650459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24651272_24651531_24651951_24652754
ES_00043806	chr5	-	309	1	FSM	ENSMUSG00000067719.6	ENSMUST00000088299.6	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACCAATCTTTAACTT	NA	False	NA	NA	False	NA	NA	NA	24786860	24786551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24786600_24786900
ES_00043807	chr5	-	1888	13	FSM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	-153	0	-153	0	multi-exon	FALSE	canonical	3	54	junction_12	43.1762376776856	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	6832	False	NA	0	True	ATTAAA	-17	NA	24807163	24797619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24806778
ES_00043808	chr5	-	1709	14	FSM	ENSMUSG00000028949.14	ENSMUST00000195943.2	1712	14	3	0	3	0	multi-exon	FALSE	canonical	3	4	junction_12	70.4408770513493	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	645	False	NA	0	True	ATTAAA	-17	NA	24829406	24797619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24827521_24827667_24829345
ES_00043810	chr5	-	1070	6	FSM	ENSMUSG00000028949.14	ENSMUST00000143501.8	1070	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	56.0464093408311	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGATGCTGGACTATCA	7062	False	NA	NA	False	NA	NA	NA	24806933	24800161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24800243_24800387_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24806778
ES_00043816	chr5	-	1194	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	0	6075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.359743655507	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGTTAGTTTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	25047426	25001745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_25001781_25008249_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ES_00043817	chr5	-	1374	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	0	410	0	-410	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGTTTTTAAACCAGG	NA	False	NA	7	True	AATAAA	-33	NA	25047622	25008230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ES_00043818	chr5	-	2606	1	FSM	ENSMUSG00000028945.10	ENSMUST00000196039.2	2606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTGAAATGTAATTTT	NA	False	NA	NA	False	NA	NA	NA	25047607	25045001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25045000_25047600
ES_00043819	chr5	-	2210	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	-5	0	1	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGTATATGAGTACT	NA	False	NA	-4	True	AATAAA	-24	NA	25113467	25067740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
ES_00043820	chr5	-	3332	16	FSM	ENSMUSG00000028944.15	ENSMUST00000030784.14	3331	16	0	-1	0	1	multi-exon	FALSE	canonical	3	8	junction_12	63.6806616381038	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGTATATGAGTACT	NA	False	NA	-4	True	AATAAA	-24	NA	25305640	25067740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
ES_00043821	chr5	-	1454	10	FSM	ENSMUSG00000028944.15	ENSMUST00000150135.8	890	10	-59	-505	-59	505	multi-exon	FALSE	canonical	3	39	junction_9	41.6092938336297	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGATCTCAAATG	NA	False	NA	NA	False	GATAAA	-18	NA	25113566	25073747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
ES_00043823	chr5	-	13571	41	NNC	ENSMUSG00000038056.16	novel	14967	59	NA	NA	-45929	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_16	15.3715443271	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAGAATGTGCACTGTGT	NA	False	NA	-6	True	AATAAA	-12	NA	25559477	25476797	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25499554_25499717_25500395_25500609_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436_25513549_25514597_25516418_25518253_25518547_25518977_25520874_25523989_25524173_25525304_25525379_25528649_25528865_25529086_25529220_25534020_25534141_25534238_25534272_25534444_25534574_25535793_25535899_25543410_25543580_25549905_25550037_25552358_25552479_25554809_25554939_25556049_25556263_25557224_25557291_25558296_25558407_25559332
ES_00043824	chr5	-	6486	20	FSM	ENSMUSG00000038056.16	ENSMUST00000172556.8	6486	20	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_15	15.8587951951449	3246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAGAAAAAAAAAAGA	NA	False	NA	NA	False	CATAAA	-5	NA	25513548	25477423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436
ES_00043825	chr5	-	1529	9	FSM	ENSMUSG00000038056.16	ENSMUST00000172626.2	4542	9	0	3013	0	-3013	multi-exon	FALSE	canonical	3	13	junction_5	3.41869858279434	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGATTTCCTAATTTG	9416	False	NA	NA	False	NA	NA	NA	25703781	25590642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25590758_25592921_25593094_25600386_25600550_25609276_25609387_25610368_25610518_25614131_25614330_25619882_25620022_25648817_25648907_25703387
ES_00043826	chr5	-	3247	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	2.5	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATATTTCATATTTTC	NA	False	NA	-12	True	AATACA	-11	NA	25910823	25894809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25897827_25903248_25903331_25910675
ES_00043827	chr5	-	939	2	Antisense	novelGene_ENSMUSG00000105422.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	157	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACTCCTTTCTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	26281167	26213074	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_26213119_26280272
ES_00043828	chr5	-	1173	2	Antisense	novelGene_ENSMUSG00000105422.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTCAAAGTAGCTCCAA	NA	False	NA	NA	False	NA	NA	NA	26281163	26212828	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_26213276_26280437
ES_00043829	chr5	-	5768	21	FSM	ENSMUSG00000002221.12	ENSMUST00000002291.12	5850	21	0	82	0	-82	multi-exon	FALSE	canonical	0	0	junction_1	176.542771021642	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCTGTTTCACTCCACAA	NA	False	NA	NA	False	NA	NA	NA	27996548	27945159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_27947502_27949112_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996196
ES_00043831	chr5	-	3723	21	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	2	-1968	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.542771021642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGGGTGATTATTTAAAA	NA	False	NA	-2	True	AATAAA	-18	NA	27996391	27947045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_27947497_27949109_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996196
ES_00043832	chr5	-	3660	21	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	35	-1968	at_least_one_novel_splicesite	FALSE	non_canonical	3	6	junction_20	174.668793721145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGGGTGATTATTTAAAA	NA	False	NA	-2	True	AATAAA	-18	NA	27996654	27947045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996524
ES_00043833	chr5	-	3617	19	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	1	-1969	at_least_one_novel_splicesite	FALSE	non_canonical	2	16	junction_17	182.126295889202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGGGTGATTATTTAAA	NA	False	NA	-3	True	AATAAA	-17	NA	27996392	27947046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27993640_27993776_27996196
ES_00043843	chr5	-	4737	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	65	-1639	0	1014	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCACAGACTGAAAGACATT	NA	False	NA	NA	False	NA	NA	NA	30278550	30262185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ES_00043844	chr5	-	3884	8	FSM	ENSMUSG00000025747.13	ENSMUST00000141630.8	3884	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	887.115366493777	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30278579	30263199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_30266132_30266965_30267048_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30274954_30276631_30276706_30278358
ES_00043845	chr5	-	2723	7	FSM	ENSMUSG00000025747.13	ENSMUST00000154751.6	2723	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	685.356030752549	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAAGACTTTCAGATT	NA	False	NA	-89	True	NA	NA	NA	30278612	30266061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30276706_30278358
ES_00043848	chr5	-	3993	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	24	0	24	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGCACAGCCTAGGTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	30360136	30323301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ES_00043850	chr5	-	1755	9	FSM	ENSMUSG00000025745.13	ENSMUST00000130358.2	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	32.7335359379337	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTAATGCCAGG	NA	False	NA	NA	False	TATAAA	-6	NA	30359960	30338232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ES_00043851	chr5	-	1546	1	FSM	ENSMUSG00000107086.2	ENSMUST00000202534.2	2065	1	-124	643	-124	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	279	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTGAAGGATGGAATGAAA	9973	False	NA	NA	False	NA	NA	NA	31028296	31026750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31026800_31028300
ES_00043852	chr5	-	1136	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	0	8	0	-8	multi-exon	FALSE	canonical	3	823	junction_2	132.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATTCTTAATGAAAGTGC	NA	False	NA	NA	False	AATAAA	-11	NA	31065132	31063236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31064111_31064742_31064881_31065008
ES_00043853	chr5	-	639	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	-63	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065132	31063861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31064111_31064742
ES_00043854	chr5	-	1385	6	FSM	ENSMUSG00000029161.9	ENSMUST00000031051.9	1442	6	57	0	57	0	multi-exon	FALSE	canonical	3	13	junction_4	4.51663591625449	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTTGGTCCAG	5353	False	NA	1	True	AATAAA	-25	NA	31102878	31090486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31091333_31091503_31091626_31091722_31091794_31091886_31091953_31093221_31093325_31102701
ES_00043855	chr5	-	5584	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	39	677	39	-677	multi-exon	TRUE	canonical	3	205	junction_7	28.1735691739616	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGACAAATCCCAACCTT	NA	False	NA	NA	False	AATGAA	-16	NA	31117666	31108873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ES_00043856	chr5	-	756	2	FSM	ENSMUSG00000045302.14	ENSMUST00000202445.2	756	2	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCAAGGAGCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	31117596	31116282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31116757_31117314
ES_00043858	chr5	-	3218	18	FSM	ENSMUSG00000006641.13	ENSMUST00000080431.8	3218	18	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_17	31.4360998487793	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	NA	False	NA	-1	True	AATAAA	-19	NA	31206268	31193379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31206095
ES_00043859	chr5	-	3129	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	27	-2	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTCTGGCCTCTGTGTT	760	False	NA	-4	True	AATAAA	-16	NA	31205396	31193382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
ES_00043861	chr5	-	2025	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	64	0	64	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3808	False	NA	0	True	AATAAA	-19	NA	31250895	31243449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
ES_00043862	chr5	-	1663	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200744.4	1653	7	0	-10	0	1	multi-exon	FALSE	canonical	3	7	junction_2	140.104722737434	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTAGCAGTTTTGT	NA	False	NA	NA	False	TTTAAA	-14	NA	31311566	31297996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31299195_31302043_31302097_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ES_00043865	chr5	-	1766	8	FSM	ENSMUSG00000107283.4	ENSMUST00000200864.4	878	8	0	-888	0	1	multi-exon	FALSE	canonical	3	9	junction_7	132.664376283514	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTAGCAGTTTTGT	NA	False	NA	NA	False	TTTAAA	-14	NA	31311536	31297996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311434
ES_00043867	chr5	-	923	7	FSM	ENSMUSG00000107283.4	ENSMUST00000201491.2	923	7	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	59.0705792534095	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGATGGTGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	31311565	31301617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ES_00043870	chr5	-	4335	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	235	-18	0	18	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAGCAACCCATCCATA	NA	False	NA	-8	True	AATAAA	-37	NA	31337253	31313330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ES_00043871	chr5	-	4722	18	FSM	ENSMUSG00000106864.4	ENSMUST00000202254.4	4718	18	0	-4	0	4	multi-exon	FALSE	canonical	3	356	junction_17	85.762849975885	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGCTTGTCCTGCAGA	NA	False	NA	-22	True	AATAAA	-23	NA	31337476	31313344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ES_00043872	chr5	-	4871	20	NIC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	-190	0	combination_of_known_junctions	FALSE	canonical	3	165	junction_17	146.210507369935	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31337678	31313348	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31337227
ES_00043877	chr5	-	1879	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	0	-1	0	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCCTTTGTATCTT	NA	False	NA	0	True	AATAAA	-24	NA	31350483	31344901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
ES_00043878	chr5	-	2589	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	12	-576	0	576	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCTGGTCTATACGAAAA	NA	False	NA	NA	False	NA	NA	NA	31350762	31344325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
ES_00043879	chr5	-	1976	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	0	-10	0	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCCTTTGTATCTT	NA	False	NA	0	True	AATAAA	-24	NA	31350358	31344901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
ES_00043882	chr5	-	2228	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359647	31356324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
ES_00043883	chr5	-	530	3	FSM	ENSMUSG00000043059.17	ENSMUST00000200992.4	530	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	94	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACAAAGGCTTTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	31358106	31357224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31357492_31357578_31357731_31357995
ES_00043885	chr5	-	2278	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	29	0	29	0	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31378002	31360011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
ES_00043886	chr5	-	3810	1	FSM	ENSMUSG00000106717.2	ENSMUST00000200853.2	3972	1	-62	224	-62	-224	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGCGTGGTGGCGCAC	NA	False	NA	NA	False	NA	NA	NA	31371721	31367911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31367900_31371700
ES_00043890	chr5	-	5427	48	FSM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	0	-24	0	24	multi-exon	TRUE	canonical	3	41	junction_37	14.3941162971073	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCACCACAGCACACTGC	NA	False	NA	25	True	ATTAAA	-44	NA	31448451	31410596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270_31418452_31418782_31418848_31419174_31419269_31420263_31420407_31420709_31420827_31420914_31421051_31421121_31421220_31421750_31421841_31422661_31422807_31422986_31423108_31423258_31423338_31423518_31423768_31423978_31424057_31424577_31424671_31424938_31425024_31428983_31429092_31429330_31429468_31433195_31433364_31434212_31434326_31437762_31437849_31438009_31438114_31438305_31438360_31438687_31438850_31439899_31439996_31440376_31440501_31441347_31441563_31442595_31442684_31442802_31442883_31443106_31443173_31443421_31443462_31443920_31444034_31444237_31444382_31448317
ES_00043893	chr5	-	2326	7	FSM	ENSMUSG00000038552.15	ENSMUST00000172435.8	2333	7	0	7	0	-7	multi-exon	FALSE	canonical	3	9	junction_5	5.32290647422377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATAATTTGAGTTCTGGG	NA	False	NA	NA	False	AATAAA	-32	NA	31453280	31449592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
ES_00043894	chr5	-	1375	8	FSM	ENSMUSG00000038552.15	ENSMUST00000041266.11	1375	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.19977323905952	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGACTGGTTCCTGTAT	NA	False	NA	NA	False	AATAAA	-17	NA	31453215	31450229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31450509_31450757_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
ES_00043895	chr5	-	1447	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1220	1	intron_retention	FALSE	canonical	3	94	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTATGTCTTTTGTCA	702	False	NA	3	True	NA	NA	NA	31646512	31643971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_31645334_31646427
ES_00043898	chr5	-	1038	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	0	4	0	-4	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACATGGGTGTGGCTACT	NA	False	NA	-35	True	AATAAA	-19	NA	31854971	31781786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
ES_00043900	chr5	-	2105	7	FSM	ENSMUSG00000023452.20	ENSMUST00000142957.6	2084	7	0	-21	0	0	multi-exon	FALSE	canonical	3	16	junction_6	252.221904062452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942983	32893644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32942892
ES_00043903	chr5	-	2158	9	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-118	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	314	junction_1	145.074765207461	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACTTAACTTTTTCAAC	NA	False	NA	NA	False	NA	NA	NA	32943108	32893767	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_32894511_32894530_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ES_00043906	chr5	-	9821	10	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	86	junction_9	19.7821468332771	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTCAAGGCTATTTTG	7071	False	NA	2	True	AATAAA	-23	NA	33011582	32947166	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
ES_00043907	chr5	-	598	1	FSM	ENSMUSG00000105429.2	ENSMUST00000198236.2	1062	1	92	372	92	-372	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTTTCTCTCTCTCTCTC	NA	False	NA	NA	False	ATTAAA	-14	NA	32958217	32957619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_32957600_32958200
ES_00043908	chr5	-	6174	9	Fusion	ENSMUSG00000093574.2_ENSMUSG00000054280.15	novel	217	2	NA	NA	16	-13652	multi-exon	FALSE	canonical	3	4	junction_1	42.2327997532723	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGAAGAGATCATGTCTC	7087	False	NA	NA	False	NA	NA	NA	33011566	32964634	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_32965086_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
ES_00043909	chr5	-	2459	10	NIC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	693	junction_8	73.9275588033129	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGCACCAGTTTTAAT	NA	False	NA	-14	True	AATAAA	-21	NA	33432325	33405066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
ES_00043910	chr5	-	2279	9	FSM	ENSMUSG00000037373.13	ENSMUST00000079746.10	2279	9	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_8	242.929741643546	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGCACCAGTTTTAAT	NA	False	NA	-14	True	AATAAA	-21	NA	33432338	33405066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33432122
ES_00043911	chr5	-	2436	10	FSM	ENSMUSG00000037373.13	ENSMUST00000202868.4	2436	10	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_1	199.225041809384	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAAAAATCCCAGA	NA	False	NA	-45	True	NA	NA	NA	33432336	33405097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33406028_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
ES_00043912	chr5	-	3595	7	FSM	ENSMUSG00000037373.13	ENSMUST00000202962.4	3595	7	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_5	78.2235045665091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTCTTATTTTTAGAATA	NA	False	NA	NA	False	NA	NA	NA	33432325	33405368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
ES_00043917	chr5	-	1962	6	NIC	ENSMUSG00000037339.18	novel	2112	7	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	70.7937850379537	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTAGATTCTTTTTG	NA	False	NA	-7	True	ATTAAA	-19	NA	33786932	33757694	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786192_33786322_33786680
ES_00043918	chr5	-	2134	7	FSM	ENSMUSG00000037339.18	ENSMUST00000150033.8	2112	7	-17	-5	0	-4	multi-exon	FALSE	canonical	3	30	junction_2	74.8793473974411	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTAGATTCTTTTTG	NA	False	NA	-7	True	ATTAAA	-19	NA	33786949	33757694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33758225_33764807_33765572_33765674_33765834_33767775_33767831_33771946_33772179_33786196_33786322_33786680
ES_00043919	chr5	-	2005	6	FSM	ENSMUSG00000037339.18	ENSMUST00000065119.15	2009	6	0	4	0	-4	multi-exon	FALSE	canonical	3	127	junction_2	26.6187903556867	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTAGATTCTTTTTG	NA	False	NA	-7	True	ATTAAA	-19	NA	33786979	33757694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196_33786322_33786680
ES_00043920	chr5	-	1579	7	FSM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	0	-1	0	1	multi-exon	FALSE	canonical	2	22	junction_4	432.7992863005	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCCCTATACTGTTTGGA	NA	False	NA	-3	True	AATAAA	-23	NA	33809650	33797397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306_33809424_33809538
ES_00043921	chr5	-	1906	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809918	33797398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ES_00043923	chr5	-	1192	6	FSM	ENSMUSG00000004642.14	ENSMUST00000139518.8	1191	6	0	-1	0	1	multi-exon	FALSE	canonical	3	1110	junction_2	48.586417855199	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTCCTCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	33809644	33800564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ES_00043927	chr5	-	825	2	FSM	ENSMUSG00000019295.9	ENSMUST00000125527.2	825	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGACGGATTGACAAGTTT	NA	False	NA	NA	False	NA	NA	NA	33815200	33812901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33813142_33814615
ES_00043928	chr5	-	5268	14	FSM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	4	0	4	0	multi-exon	FALSE	canonical	3	324	junction_8	46.4800014258216	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTACAGTGGTGTGTCC	NA	False	NA	NA	False	AATAAA	-20	NA	33940157	33897016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704_33927156_33935951_33936013_33939817
ES_00043931	chr5	-	329	2	FSM	ENSMUSG00000005299.7	ENSMUST00000148451.2	2478	2	0	2149	0	-2149	multi-exon	FALSE	canonical	3	361	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCCCATGACTGAATAT	NA	False	NA	NA	False	NA	NA	NA	33940081	33935947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33936013_33939817
ES_00043932	chr5	-	2580	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093757	34055259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ES_00043934	chr5	-	2065	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	9	-1	9	1	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTTTTTGTTTTTT	9963	False	NA	1	True	NA	NA	NA	34326862	34311222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
ES_00043938	chr5	-	6122	4	Fusion	ENSMUSG00000086291.2_ENSMUSG00000037224.16	novel	650	5	NA	NA	292	-3	intron_retention	FALSE	canonical	2	11	junction_3	3.85861230093008	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATAGTTTTGATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	34389608	34369156	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_34371410_34371553_34375210_34382295_34382398_34389497
ES_00043939	chr5	-	1344	7	NNC	ENSMUSG00000037224.16	novel	712	4	NA	NA	-41	-1318	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	9.97914491994847	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAATTTTTTATTAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	34445834	34385249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34385540_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
ES_00043942	chr5	-	994	2	FSM	ENSMUSG00000059866.14	ENSMUST00000159102.2	584	2	-189	-221	0	221	multi-exon	FALSE	canonical	3	117	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACTGCCATAGAGCCACC	NA	False	NA	NA	False	NA	NA	NA	34671193	34660408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34661172_34670962
ES_00043943	chr5	-	1383	11	NNC	ENSMUSG00000001082.13	novel	1754	13	NA	NA	0	48689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.764641202674	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34793468	34742296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34742327_34790989_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364
ES_00043944	chr5	-	1328	10	NIC	ENSMUSG00000001082.13	novel	1754	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	34	junction_9	114.886202418623	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34793468	34790989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793087_34793364
ES_00043945	chr5	-	1684	13	NIC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_12	101.567164422804	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	-5	True	AATAAA	-19	NA	34794484	34790990	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794442
ES_00043946	chr5	-	1903	13	FSM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	0	4	0	0	multi-exon	FALSE	canonical	3	174	junction_12	65.1670929227321	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794533	34790989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ES_00043947	chr5	-	1746	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	12	-4	-8	0	multi-exon	FALSE	canonical	3	36	junction_12	99.4937183946806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTCTTACTATTCTTT	NA	False	NA	0	True	AATAAA	-24	NA	34794544	34790985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
ES_00043949	chr5	-	1908	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	-2	0	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	-5	True	AATAAA	-19	NA	34794536	34790990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
ES_00043954	chr5	-	2702	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	-5	True	AATAAA	-16	NA	34817492	34795879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ES_00043955	chr5	-	2945	9	NNC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	0	2192	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	303.960292431429	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGTCAAACATTATTAGC	NA	False	NA	NA	False	NA	NA	NA	35263040	35246652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_35246692_35248849_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ES_00043956	chr5	-	2893	8	NNC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_2	299.112223837441	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTCTGGGGAAAATGAC	NA	False	NA	-12	True	AATAAA	-16	NA	35263030	35248849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_35250731_35252193_35252368_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ES_00043957	chr5	-	2986	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	0	-5	0	5	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAATGACCTGTGTCCTA	NA	False	NA	-2	True	AATAAA	-26	NA	35263110	35248839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ES_00043958	chr5	-	1573	7	FSM	ENSMUSG00000029103.17	ENSMUST00000147028.3	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	75.6233356107021	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACTTGAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	35263033	35250638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255618_35256500_35256623_35259738_35259884_35262822
ES_00043960	chr5	-	3790	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.3	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAATAGAAATATTTAT	7626	False	NA	NA	False	TATAAA	-21	NA	35732414	35713546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ES_00043961	chr5	-	3326	11	NNC	ENSMUSG00000029097.12	novel	3790	11	NA	NA	-574	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	31.6924281177697	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAATAGAAATATTTAT	7052	False	NA	NA	False	TATAAA	-21	NA	35732988	35713546	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730238_35731423_35731539_35732911
ES_00043963	chr5	-	4269	18	NNC	ENSMUSG00000036553.17	novel	4549	18	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_17	23.8697445709491	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATCTTCTAGGTGTG	NA	False	NA	-5	True	AGTAAA	-15	NA	35886343	35854523	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881486_35886290
ES_00043964	chr5	-	4231	17	NIC	ENSMUSG00000036553.17	novel	4549	18	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_15	26.8048503073604	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATCTTCTAGGTGTG	NA	False	NA	-5	True	AGTAAA	-15	NA	35886377	35854523	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35881257_35881489_35886290
ES_00043966	chr5	-	4361	18	FSM	ENSMUSG00000036553.17	ENSMUST00000201511.2	4246	18	-112	-3	-112	0	multi-exon	FALSE	canonical	3	51	junction_17	16.3400287573917	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATCTTCTAGGTGTG	NA	False	NA	-5	True	AGTAAA	-15	NA	35897443	35854523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
ES_00043967	chr5	-	5707	27	FSM	ENSMUSG00000029093.15	ENSMUST00000037370.14	5707	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_26	3.95836317854419	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACAGGGTCGGTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	36555468	36174523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36176737_36178572_36178677_36181335_36181439_36181910_36182011_36183163_36183290_36184002_36184116_36185205_36185330_36186395_36186530_36188495_36188683_36193040_36193213_36194749_36194879_36195464_36195599_36196654_36196776_36199435_36199544_36200786_36200879_36203825_36203903_36205144_36205248_36207791_36207939_36213313_36213494_36219881_36219972_36222682_36222802_36225431_36225497_36228669_36228744_36235217_36235383_36311166_36311267_36386488_36386557_36554909
ES_00043968	chr5	-	3791	2	FSM	ENSMUSG00000029196.10	ENSMUST00000031097.8	3791	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTGTTTGCTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	36641629	36631013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36634307_36641131
ES_00043969	chr5	-	4445	12	FSM	ENSMUSG00000029192.18	ENSMUST00000171385.8	3884	12	-560	-1	419	0	multi-exon	FALSE	canonical	3	47	junction_11	14.7609043598508	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTGTGTACTTTGGT	8224	False	NA	0	True	AATAAA	-22	NA	36688527	36647947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36687766
ES_00043971	chr5	-	4585	14	FSM	ENSMUSG00000029192.18	ENSMUST00000031094.15	4590	14	5	0	-2	0	multi-exon	FALSE	canonical	3	20	junction_13	25.6258929704419	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTGTGTACTTTGGT	8930	False	NA	0	True	AATAAA	-22	NA	36739736	36647947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36739698
ES_00043976	chr5	-	1273	3	NNC	ENSMUSG00000029190.20	novel	2014	2	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	2	47	junction_1	14.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTGTATTATGTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	36853291	36828742	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_36829428_36830091_36830587_36853198
ES_00043977	chr5	-	1286	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	0	-13	0	13	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGATTATTTACCATAGT	NA	False	NA	9	True	ATTAAA	-32	NA	36905994	36904708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36904700_36906000
ES_00043978	chr5	-	1627	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	0	44275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	839	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTCTATCTGCAGTTAC	NA	False	NA	NA	False	NA	NA	NA	36954116	36907935	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_36907962_36952257_36953289_36953546
ES_00043979	chr5	-	1626	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	0	44275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	839	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTCTATCTGCAGTTAC	NA	False	NA	NA	False	NA	NA	NA	36954116	36907935	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_36907961_36952257_36953289_36953546
ES_00043980	chr5	-	1648	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36954116	36952210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36953289_36953546
ES_00043981	chr5	-	3318	19	FSM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	12	0	12	0	multi-exon	FALSE	canonical	3	157	junction_7	26.3739138796905	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	961	False	NA	-13	True	AATAAA	-21	NA	36987985	36964264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
ES_00043982	chr5	-	3719	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	70	-2	70	2	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTCTGGTTTGATTA	NA	False	NA	3	True	AATAAA	-20	NA	37146479	37123445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
ES_00043983	chr5	-	4323	21	FSM	ENSMUSG00000029122.12	ENSMUST00000031005.11	4325	21	0	2	0	-2	multi-exon	FALSE	canonical	1	3	junction_11	2.64764045897474	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGTTCTTGCCTGTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	37494238	37456516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_37457845_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875_37469087_37470772_37470883_37471702_37471916_37473668_37473768_37475506_37475656_37476232_37476450_37477579_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
ES_00043984	chr5	-	1925	2	FSM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	3	7	2	-7	multi-exon	FALSE	canonical	2	10	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGATGTCTGTGGGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	37981924	37977835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_37979045_37981208
ES_00043985	chr5	-	1704	1	FSM	ENSMUSG00000107276.2	ENSMUST00000202512.2	1704	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGATTCTGGTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	38293441	38291737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38291700_38293400
ES_00043986	chr5	-	2279	5	FSM	ENSMUSG00000029126.8	ENSMUST00000031009.8	2581	5	302	0	-132	0	multi-exon	TRUE	canonical	3	5	junction_1	2.8613807855649	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGACTGTCTGTACTCA	NA	False	NA	1	True	AATAAA	-25	NA	38316949	38294535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38296217_38302052_38302164_38312951_38313069_38316220_38316376_38316734
ES_00043987	chr5	-	2944	8	FSM	ENSMUSG00000029127.16	ENSMUST00000094833.10	2978	8	34	0	1	0	multi-exon	FALSE	canonical	3	18	junction_5	10.0772526220277	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGCTCAGTTTCTAAGC	NA	False	NA	NA	False	NA	NA	NA	38377767	38357423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790_38373958_38377666
ES_00043990	chr5	-	4263	15	FSM	ENSMUSG00000005103.13	ENSMUST00000005234.13	3089	15	0	-1174	0	1174	multi-exon	FALSE	canonical	0	0	junction_6	233.56139122164	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGATAGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	38719149	38682981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
ES_00043992	chr5	-	2146	15	FSM	ENSMUSG00000005103.13	ENSMUST00000201260.4	2139	15	0	-7	0	0	multi-exon	FALSE	canonical	0	0	junction_6	308.085372808862	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGCGTACCTAAAAC	NA	False	NA	0	True	AATAAA	-18	NA	38718978	38684922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718540_38718858
ES_00043996	chr5	-	7170	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	-305	-61	-229	59	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCTGATGGGAAGGTGG	NA	False	NA	56	True	ATTAAA	-33	NA	38842398	38825767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
ES_00044000	chr5	-	1701	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	0	-4	0	4	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGGATTTTCATTTATT	NA	False	NA	0	True	AATAAA	-18	NA	41865464	41782314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ES_00044001	chr5	-	1639	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	0	-4	0	4	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGGATTTTCATTTATT	NA	False	NA	0	True	AATAAA	-18	NA	41865497	41782314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ES_00044002	chr5	-	868	7	FSM	ENSMUSG00000029128.13	ENSMUST00000202913.2	863	7	0	-5	0	4	multi-exon	FALSE	canonical	1	7	junction_1	193.008419505471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGGATTTTCATTTATT	NA	False	NA	0	True	AATAAA	-18	NA	41865500	41782314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_41782432_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ES_00044003	chr5	-	10399	26	FSM	ENSMUSG00000061755.11	ENSMUST00000202908.2	10399	26	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_22	25.3587381389532	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGTGACAAGAATTTTT	NA	False	NA	0	True	TATAAA	-22	NA	42001658	41944880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_41946293_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550_41979504_41981311_41981385_41983805_41983945_41984451_41984564_41986095_41986263_41988787_41988938_41989553_41990169_41991000_41991192_41995382_41995508_42001274
ES_00044004	chr5	-	10548	27	FSM	ENSMUSG00000061755.11	ENSMUST00000050556.11	10540	27	-8	0	-8	0	multi-exon	FALSE	canonical	3	23	junction_1	28.7549584095699	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGTGACAAGAATTTTT	NA	False	NA	0	True	TATAAA	-22	NA	42001666	41944880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_41946293_41949139_41949281_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550_41979504_41981311_41981385_41983805_41983945_41984451_41984564_41986095_41986263_41988787_41988938_41989553_41990169_41991000_41991192_41995382_41995508_42001274
ES_00044008	chr5	-	4139	10	FSM	ENSMUSG00000039753.17	ENSMUST00000124610.6	2306	10	-139	-1694	-91	1694	multi-exon	FALSE	canonical	3	499	junction_2	33.8234340562579	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTTTCTCAATATTATT	8737	False	NA	NA	False	AAAAAG	-21	NA	43939583	43906253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ES_00044011	chr5	-	361	1	FSM	ENSMUSG00000104701.2	ENSMUST00000199304.2	1039	1	387	291	387	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCTTCCAGGATCAGC	NA	False	NA	NA	False	NA	NA	NA	43965698	43965337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43965300_43965700
ES_00044012	chr5	-	1163	2	FSM	ENSMUSG00000048373.9	ENSMUST00000061299.9	1161	2	0	-2	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTTTCCTTCTGATAC	NA	False	NA	NA	False	AATAAA	-23	NA	44139106	44136199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44137311_44139054
ES_00044013	chr5	-	3667	27	FSM	ENSMUSG00000029086.16	ENSMUST00000087441.11	3664	27	0	-3	0	1	multi-exon	FALSE	canonical	3	24	junction_7	5.3433861125628	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTTTGGTCCTTAAA	NA	False	NA	NA	False	AATAAA	-19	NA	44259023	44150960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
ES_00044015	chr5	-	3557	14	FSM	ENSMUSG00000046985.12	ENSMUST00000055128.12	3513	14	5	-49	0	49	multi-exon	FALSE	canonical	3	70	junction_1	11.6390487421138	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTGAGAGATTTCTTAT	NA	False	NA	54	True	NA	NA	NA	44383959	44332446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44361551_44361671_44375445_44375577_44383755
ES_00044018	chr5	-	211	1	FSM	ENSMUSG00000105519.2	ENSMUST00000198875.2	3459	1	-129	3377	-129	-3377	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTTCCTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	44374730	44374519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44374500_44374700
ES_00044020	chr5	-	1392	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	1	-13	1	-12	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTCAAGTCCTGACTTAC	NA	False	NA	-6	True	AATAAA	-28	NA	45607577	45591381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ES_00044022	chr5	-	5473	6	FSM	ENSMUSG00000015882.19	ENSMUST00000190036.7	5463	6	0	-10	0	7	multi-exon	FALSE	canonical	3	25	junction_1	19.1562000407179	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTCAAAGTGGCCCCC	NA	False	NA	3	True	AATAAA	-28	NA	46014809	45854515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45859340_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ES_00044023	chr5	-	5700	7	FSM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	15	-7	15	7	multi-exon	FALSE	canonical	3	11	junction_1	22.5197444232586	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTCAAAGTGGCCCCC	NA	False	NA	3	True	AATAAA	-28	NA	46014942	45854515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45859340_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ES_00044025	chr5	-	4945	7	FSM	ENSMUSG00000015882.19	ENSMUST00000016026.14	4884	7	0	-61	0	5	multi-exon	FALSE	canonical	3	22	junction_1	18.7349939951952	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATACTGAGTTCTTTGAGT	NA	False	NA	NA	False	AGTAAA	-22	NA	46014855	45887671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45891828_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ES_00044026	chr5	-	478	1	FSM	ENSMUSG00000101587.3	ENSMUST00000189967.3	877	1	306	93	306	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGACTCTGTCCAGTT	NA	False	NA	NA	False	AGTAAA	-35	NA	45926779	45926301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45926300_45926800
ES_00044028	chr5	-	4485	19	FSM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	0	-5	0	5	multi-exon	FALSE	canonical	3	391	junction_6	33.7942668086734	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGGTGGCTTATGTT	NA	False	NA	-5	True	AATAAA	-19	NA	50216348	50117292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215893
ES_00044029	chr5	-	3014	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	0	-4	0	4	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTATCTTTTATTCTAA	NA	False	NA	6	True	AATAAA	-31	NA	52347856	52307540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ES_00044030	chr5	-	2375	14	FSM	ENSMUSG00000029169.12	ENSMUST00000200186.5	2375	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	209.215072940651	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTCAATCCAAGGAATAT	NA	False	NA	NA	False	NA	NA	NA	52347719	52308034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ES_00044031	chr5	-	6264	2	FSM	ENSMUSG00000029169.12	ENSMUST00000199343.2	1253	2	-2636	-2375	1194	-256	multi-exon	FALSE	canonical	3	842	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTAAGCTGATATTTC	NA	False	NA	NA	False	NA	NA	NA	52317781	52308290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52311570_52314796
ES_00044032	chr5	-	6271	8	FSM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	0	2	0	-2	multi-exon	FALSE	canonical	3	32	junction_6	6.36636570147348	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCGCTTTGATCTCTGG	NA	False	NA	NA	False	AATAAA	-16	NA	52723645	52690860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52719540_52721307_52721380_52723259
ES_00044033	chr5	-	5254	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	1	-3	1	3	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCTTCTTGCACTCTT	NA	False	NA	27	True	AATAAA	-44	NA	52827049	52797425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
ES_00044039	chr5	-	3242	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	-1	0	1	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCAGTCTGCTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64126240	64066238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ES_00044040	chr5	-	1366	7	FSM	ENSMUSG00000037913.13	ENSMUST00000212080.2	1411	7	35	10	-20	-10	multi-exon	FALSE	canonical	0	0	junction_3	1.06718737290547	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATTTAGCATCGAATA	NA	False	NA	NA	False	AGTAAA	-3	NA	65248992	65222053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65222534_65229584_65229669_65231093_65231214_65232905_65233167_65237264_65237535_65248701_65248769_65248908
ES_00044042	chr5	-	4704	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	0	-5	0	3	multi-exon	TRUE	canonical	3	281	junction_12	79.0184138174275	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTCTTGCCCCTCTCTT	-17	True	NA	1	True	AATAAA	-24	NA	65492964	65419189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ES_00044044	chr5	-	4771	25	FSM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-69	-750	-17	0	multi-exon	FALSE	canonical	3	185	junction_1	103.759328563213	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	NA	False	NA	-4	True	AATAAA	-19	NA	65493030	65419194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ES_00044047	chr5	-	750	9	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	14	6173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4718.09019724878	1457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTCGCTATAGACATAA	NA	False	NA	NA	False	NA	NA	NA	65548773	65539533	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65539562_65545708_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ES_00044049	chr5	-	1199	5	FSM	ENSMUSG00000047215.15	ENSMUST00000118543.8	1193	5	0	-6	0	6	multi-exon	FALSE	canonical	3	9546	junction_4	1705.30515964152	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTGTCTTTTCTGATT	NA	False	NA	0	True	AATAAA	-22	NA	65548348	65545700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ES_00044050	chr5	-	2652	2	FSM	ENSMUSG00000047215.15	ENSMUST00000140879.2	2651	2	0	-1	0	0	multi-exon	FALSE	canonical	3	5084	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548741	65545706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65548336_65548718
ES_00044051	chr5	-	2690	3	FSM	ENSMUSG00000047215.15	ENSMUST00000127874.6	2690	3	0	0	0	0	multi-exon	FALSE	canonical	3	9546	junction_2	1700	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548742	65545706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65547827_65548081_65548198_65548288
ES_00044052	chr5	-	744	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	0	-6	0	6	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTGTCTTTTCTGATT	NA	False	NA	0	True	AATAAA	-22	NA	65548787	65545700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ES_00044053	chr5	-	675	7	FSM	ENSMUSG00000047215.15	ENSMUST00000196667.5	675	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	5003.25345539169	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATATATTGATTTGTG	NA	False	NA	-20	True	AATAAA	-2	NA	65548329	65545720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ES_00044054	chr5	-	680	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAGAAGATTTTACATG	NA	False	NA	-120	True	ATTAAA	-32	NA	65548723	65545820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ES_00044055	chr5	-	4057	7	FSM	ENSMUSG00000029201.15	ENSMUST00000125375.8	6156	7	2116	-17	-552	14	multi-exon	FALSE	canonical	3	424	junction_1	37.8934910857612	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTATGTTTTATGTTCATAT	NA	False	NA	1	True	AATAAA	-36	NA	65580701	65570549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65580126_65580503
ES_00044058	chr5	-	4528	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	32	0	32	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGTTTTCTGTTTGACTT	NA	False	NA	-3	True	AATAAA	-19	NA	65650711	65604186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ES_00044059	chr5	-	7012	34	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	0	74193	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	144.05641176439	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAAATGTACCTACCA	2641	False	NA	NA	False	NA	NA	NA	65855616	65688870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65688904_65765118_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
ES_00044060	chr5	-	583	1	FSM	ENSMUSG00000105601.2	ENSMUST00000199296.2	4193	1	-65	3675	-65	-3675	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGCTCTTGTTATACAA	5044	False	NA	NA	False	NA	NA	NA	65693168	65692585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65692600_65693200
ES_00044063	chr5	-	8782	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-8494	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	137.114228012404	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGTTCTCCAATTTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	65864110	65763065	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65767539_65772606_65772948_65776286_65776399_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65863839
ES_00044064	chr5	-	6851	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	22	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	110.837996749479	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTAGAAGTGTGGAAAC	2768	False	NA	NA	False	AATAAA	-17	NA	65855489	65765122	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65767539_65772606_65772948_65776286_65776399_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
ES_00044065	chr5	-	6682	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-8385	59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	137.114228012404	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCCATTTTTCAAGCCT	NA	False	NA	NA	False	NA	NA	NA	65864001	65765053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65863839
ES_00044070	chr5	-	4902	7	ISM	ENSMUSG00000070780.12	ENSMUST00000167950.8	4895	8	148	-2	6	1	3prime_fragment	FALSE	canonical	3	18	junction_6	10.0235833025033	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAAGACTTTCTTTTCCT	NA	False	NA	-1	True	AATAAA	-17	NA	66309119	66173897	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308881
ES_00044074	chr5	-	1481	1	FSM	ENSMUSG00000107304.2	ENSMUST00000201019.2	3395	1	114	1800	114	-1800	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGGTATGTTCTAAGGA	NA	False	NA	NA	False	NA	NA	NA	66230124	66228643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_66228600_66230100
ES_00044075	chr5	-	6562	16	FSM	ENSMUSG00000029207.17	ENSMUST00000162366.8	6540	16	0	-22	0	0	multi-exon	FALSE	canonical	3	21	junction_4	23.9298976178336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTTAGTGTTTGTGTCT	NA	False	NA	23	True	ATTAAA	-38	NA	66776101	66456045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468424_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ES_00044076	chr5	-	6662	17	FSM	ENSMUSG00000029207.17	ENSMUST00000160870.8	6526	17	-136	0	-33	0	multi-exon	FALSE	canonical	0	0	junction_10	31.1528489868904	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTTAGTAATGGGAGGT	NA	False	NA	-2	True	ATTAAA	-13	NA	66776160	66456070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ES_00044077	chr5	-	6426	16	NNC	ENSMUSG00000029207.17	novel	6632	16	NA	NA	23603	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_11	25.1761792176653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTTAGTAATGGGAGGT	NA	False	NA	-2	True	ATTAAA	-13	NA	66752380	66456070	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557628_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66752306
ES_00044078	chr5	-	6333	16	FSM	ENSMUSG00000029207.17	ENSMUST00000159786.8	6333	16	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_15	15.1314242555022	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGACTCCTTGATCTGA	NA	False	NA	-70	True	AATAAA	-16	NA	66776006	66456182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ES_00044080	chr5	-	3175	15	NNC	ENSMUSG00000029207.17	novel	6333	16	NA	NA	23584	-8	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_13	29.5276591192262	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAAGGCCTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	66752399	66459222	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66700804_66700961_66752306
ES_00044083	chr5	-	828	2	Antisense	novelGene_ENSMUSG00000107300.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATACTATTGTATGGG	NA	False	NA	NA	False	AATAAA	-18	NA	66847284	66844676	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_66845383_66847162
ES_00044084	chr5	-	8013	6	NIC	ENSMUSG00000092060.5	novel	8268	6	NA	NA	185	0	combination_of_known_junctions	TRUE	canonical	3	39	junction_5	22.3374125627835	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGACTTGATTTTTTT	NA	False	NA	-5	True	AATAAA	-20	NA	67585468	67549489	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_67555794_67557474_67557645_67562773_67562863_67574798_67575366_67584408_67585136_67585312
ES_00044085	chr5	-	8084	6	FSM	ENSMUSG00000092060.5	ENSMUST00000201972.2	8268	6	185	-1	185	0	multi-exon	FALSE	canonical	3	28	junction_1	28.5839115587773	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGACTTGATTTTTTT	NA	False	NA	-5	True	AATAAA	-20	NA	67585468	67549489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_67555794_67557403_67557645_67562773_67562863_67574798_67575366_67584408_67585136_67585312
ES_00044086	chr5	-	8128	36	FSM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	-59	0	0	0	multi-exon	TRUE	canonical	3	27	junction_2	10.9452813428194	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGGCTGAAGTTTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	68004772	67775482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_67780040_67781352_67781445_67788033_67788127_67788829_67788919_67805035_67805144_67805867_67805925_67808930_67808993_67813248_67813328_67817212_67817336_67817436_67817512_67824663_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67938330_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ES_00044088	chr5	-	854	7	FSM	ENSMUSG00000037685.16	ENSMUST00000113652.8	854	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	8.34166250416147	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGATTCTTAATTAAG	NA	False	NA	NA	False	AATAAA	-25	NA	68004774	67938221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ES_00044090	chr5	-	1894	7	FSM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	0	0	0	0	multi-exon	TRUE	canonical	3	104	junction_4	11.5998084275369	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATCTCATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-45	NA	69749683	69732343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ES_00044093	chr5	-	205	2	NNC	ENSMUSG00000000560.10	novel	5852	10	NA	NA	33876	-317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGCTGTTCTTTGCCTCA	NA	False	NA	NA	False	NA	NA	NA	71137151	71117140	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_71117170_71136975
ES_00044095	chr5	-	3896	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	0	-1	0	1	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAGACTCATGGGTATTT	NA	False	NA	-3	True	NA	NA	NA	72325532	72313916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ES_00044096	chr5	-	3360	6	FSM	ENSMUSG00000029213.12	ENSMUST00000199767.5	3360	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	163.112966989139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCGTTCCATACTCCA	NA	False	NA	NA	False	NA	NA	NA	72325507	72314527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322097_72322198_72322693_72322850_72325421
ES_00044098	chr5	-	1416	3	FSM	ENSMUSG00000072889.10	ENSMUST00000149393.2	1193	3	-9	-214	-9	0	multi-exon	FALSE	canonical	3	141	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTGATAAAGGATATTTA	586	False	NA	NA	False	ATTAAA	-16	NA	72674699	72670643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_72671675_72673554_72673609_72674368
ES_00044101	chr5	-	800	5	FSM	ENSMUSG00000072889.10	ENSMUST00000146761.2	798	5	0	-2	0	0	multi-exon	FALSE	canonical	3	106	junction_4	15.8587515271537	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTTGTATTGTTGGAAG	NA	False	NA	NA	False	AATAAA	-27	NA	72716991	72707564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_72707766_72709985_72710096_72713514_72713689_72716356_72716612_72716931
ES_00044105	chr5	-	11340	63	FSM	ENSMUSG00000070733.14	ENSMUST00000101127.12	11340	63	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_50	12.4788270213728	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTCCTTTAAATTATTA	NA	False	NA	0	True	GATAAA	-31	NA	73413962	73177664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281_73222890_73224616_73224712_73226066_73226258_73227225_73227348_73228447_73228653_73230078_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ES_00044106	chr5	-	8303	56	NIC	ENSMUSG00000070733.14	novel	11340	63	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	12.2396726580763	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGAGACATGGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	73413932	73204862	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281_73222890_73224616_73224712_73226066_73226258_73227225_73227348_73228447_73228653_73230078_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73272598_73272644_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ES_00044107	chr5	-	723	5	FSM	ENSMUSG00000070733.14	ENSMUST00000201277.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	18.3217766605752	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTAACTCTTTGAGGT	NA	False	NA	NA	False	NA	NA	NA	73228642	73222766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_73222890_73224616_73224712_73226066_73226255_73227225_73227348_73228447
ES_00044111	chr5	-	2544	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	0	10	0	4	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCCAATACGCTGGCT	NA	False	NA	-11	True	AATAAA	-25	NA	73496335	73479551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ES_00044112	chr5	-	2559	7	NNC	ENSMUSG00000029153.12	novel	2554	7	NA	NA	-18	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	57.7458512218266	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCCAATACGCTGGCT	NA	False	NA	-11	True	AATAAA	-25	NA	73496353	73479551	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493290_73495877
ES_00044114	chr5	-	3943	8	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18584	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.3052497641136	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGTTTCTTCGTGACTT	NA	False	NA	NA	False	AATAAA	-17	NA	73823717	73790091	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
ES_00044115	chr5	-	4597	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	9	129	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTAGTTTTTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	74226400	74159257	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
ES_00044116	chr5	-	4557	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTTGGCTCCTATTT	NA	False	NA	NA	False	ATTAAA	-26	NA	74229092	74159386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
ES_00044118	chr5	-	432	2	FSM	ENSMUSG00000062110.15	ENSMUST00000148994.3	436	2	0	4	0	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCATAGAAGTCTACTGGT	NA	False	NA	NA	False	AATAAA	-16	NA	74558399	74555797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_74556145_74558314
ES_00044120	chr5	-	9621	6	FSM	ENSMUSG00000029229.9	ENSMUST00000075452.7	9699	6	45	33	45	-33	multi-exon	FALSE	canonical	3	625	junction_4	34.4290574950869	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CGAAAAACCAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	75205390	75158681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_75167425_75171891_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
ES_00044122	chr5	-	2204	13	FSM	ENSMUSG00000062960.11	ENSMUST00000202473.4	4023	13	67	1752	67	-1752	multi-exon	FALSE	canonical	0	0	junction_6	1.06718737290547	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGAGGCATCCCTGGGT	NA	False	NA	NA	False	AAGAAA	-35	NA	76139051	76119776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_76120119_76121369_76121479_76122393_76122506_76123369_76123527_76125234_76125399_76125484_76125600_76127006_76127185_76128331_76128472_76128980_76129150_76129390_76129522_76132912_76133116_76135061_76135156_76138761
ES_00044123	chr5	-	325	1	FSM	ENSMUSG00000107020.2	ENSMUST00000201529.2	352	1	133	-106	133	106	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAACTGGATTTATTTC	NA	False	NA	NA	False	NA	NA	NA	76221290	76220965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_76221000_76221300
ES_00044132	chr5	-	3694	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_15	18.6828501275605	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053361	77023781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ES_00044137	chr5	-	1080	5	FSM	ENSMUSG00000055923.17	ENSMUST00000154548.8	1080	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	25.8891869319992	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053339	77044088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ES_00044138	chr5	-	3981	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATGTGTGCATTTTAA	NA	False	NA	49	True	AATAAA	-3	NA	77099425	77061122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ES_00044140	chr5	-	1113	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	3143	False	NA	-3	True	ATTAAA	-20	NA	77243124	77234834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77235664_77242712_77242870_77242997
ES_00044142	chr5	-	2299	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	0	-11	0	11	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	1573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTGACCAAGTATACA	NA	False	NA	80	True	AATAAA	-25	NA	77457931	77442017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
ES_00044143	chr5	-	211	1	ISM	ENSMUSG00000036285.11	ENSMUST00000150451.2	577	2	726	0	726	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	77451436	77451225	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_77451200_77451400
ES_00044144	chr5	-	3375	3	FSM	ENSMUSG00000036285.11	ENSMUST00000150722.2	2815	3	-560	0	-535	0	multi-exon	FALSE	canonical	3	159	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	77458466	77452826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77454324_77455399_77455565_77456753
ES_00044147	chr5	-	3198	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	0	-6	0	6	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTGTGGTGGTGTTC	NA	False	NA	0	True	ATTAAA	-23	NA	86213442	86159876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
ES_00044148	chr5	-	3150	19	NNC	ENSMUSG00000029253.13	novel	3192	19	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_12	33.8124821717851	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTGTGGTGGTGTTC	NA	False	NA	0	True	ATTAAA	-23	NA	86213406	86159876	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185761_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
ES_00044149	chr5	-	6575	33	FSM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	15	0	15	0	multi-exon	FALSE	canonical	3	104	junction_13	11.1589632554956	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTCTTGAGTTGCAACT	7103	False	NA	-4	True	NA	NA	NA	86320647	86257145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555_86312651_86318413_86318477_86320526
ES_00044150	chr5	-	2126	5	FSM	ENSMUSG00000061259.12	ENSMUST00000122377.2	2256	5	80	50	80	-50	multi-exon	FALSE	canonical	1	2	junction_1	1.22474487139159	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATCTATCTTGGGCAC	NA	False	NA	NA	False	AATATA	-1	NA	86475515	86450125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_86451632_86454125_86454269_86457122_86457383_86474266_86474445_86475476
ES_00044152	chr5	-	2296	10	FSM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	0	-10	0	0	multi-exon	FALSE	canonical	3	10	junction_9	165.873073593064	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTATATTTTCTTTAC	NA	False	NA	2	True	AATAAA	-36	NA	88823525	88807306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823353
ES_00044155	chr5	-	646	1	FSM	ENSMUSG00000082389.3	ENSMUST00000122035.3	1390	1	174	570	174	-570	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCAACCCCAGCAAGCG	NA	False	NA	NA	False	NA	NA	NA	88987084	88986438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_88986400_88987100
ES_00044156	chr5	-	227	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTAATAAAAATGAAAGCGC	NA	False	NA	NA	False	NA	NA	NA	89357187	89271730	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_89271755_89356984
ES_00044157	chr5	-	1311	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	-4	0	4	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGAGATAATTTCTTTC	NA	False	NA	0	True	AATAAA	-20	NA	90371831	90362578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ES_00044158	chr5	-	1337	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	0	-4	0	4	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGAGATAATTTCTTTC	NA	False	NA	0	True	AATAAA	-20	NA	90371860	90362578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
ES_00044159	chr5	-	1344	6	NIC	ENSMUSG00000035505.15	novel	1333	6	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	63	junction_5	93.5534072067928	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGAGATAATTTCTTTC	NA	False	NA	0	True	AATAAA	-20	NA	90371860	90362578	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370195_90371474
ES_00044160	chr5	-	9314	33	FSM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	0	-1257	0	-42	multi-exon	FALSE	canonical	1	45	junction_32	30.9701847548574	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACATTTTATTTATTTAA	NA	False	NA	NA	False	AATACA	-24	NA	90514087	90375066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ES_00044161	chr5	-	9354	33	NIC	ENSMUSG00000055204.16	novel	8057	33	NA	NA	0	1	combination_of_known_splicesites	TRUE	canonical	1	34	junction_19	34.2873741111433	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTGCAGGTCTTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	90514087	90375023	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426248_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ES_00044162	chr5	-	10431	34	FSM	ENSMUSG00000055204.16	ENSMUST00000014421.15	10458	34	6	21	6	-21	multi-exon	FALSE	canonical	1	25	junction_19	38.1218865865083	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAAAAAAAGTTCTTG	NA	False	NA	NA	False	AATATA	-21	NA	90514430	90375045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90430709_90431463_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ES_00044166	chr5	-	4907	25	NIC	ENSMUSG00000055204.16	novel	9311	34	NA	NA	-5	-7	combination_of_known_splicesites	FALSE	canonical	1	34	junction_11	35.1954858216536	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTATGTAATTTTTCGTG	NA	False	NA	-11	True	AATAAA	-7	NA	90514428	90401221	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426248_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ES_00044168	chr5	-	374	1	FSM	ENSMUSG00000107261.2	ENSMUST00000202320.2	375	1	91	-90	91	90	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCCCAGTGACTCGCC	NA	False	NA	NA	False	AATAGA	-22	NA	91885847	91885473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_91885500_91885800
ES_00044169	chr5	-	880	1	FSM	ENSMUSG00000106917.2	ENSMUST00000202613.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCCAGTTAAAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	91909434	91908554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_91908600_91909400
ES_00044170	chr5	-	421	1	FSM	ENSMUSG00000096726.3	ENSMUST00000178933.3	495	1	48	26	48	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCATTTCTGACTGTGGA	8237	False	NA	NA	False	NA	NA	NA	91954884	91954463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_91954500_91954900
ES_00044171	chr5	-	1967	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTTTATGGATGAATG	1335	False	NA	NA	False	TATAAA	-18	NA	92110927	92096762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ES_00044172	chr5	-	591	4	FSM	ENSMUSG00000029397.16	ENSMUST00000138351.2	715	4	124	0	124	0	multi-exon	FALSE	canonical	3	333	junction_3	5.71547606649408	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCCATCCGAATACCAGAA	NA	False	NA	NA	False	NA	NA	NA	92101489	92099712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92099801_92100799_92100827_92100911_92100971_92101072
ES_00044174	chr5	-	4232	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAATCTGAAGTTATA	NA	False	NA	0	True	AATAAA	-33	NA	92231416	92200004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ES_00044175	chr5	-	4200	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	-18	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAATCTGAAGTTATA	NA	False	NA	0	True	AATAAA	-33	NA	92231578	92200004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ES_00044176	chr5	-	3021	12	FSM	ENSMUSG00000029405.17	ENSMUST00000164378.8	3026	12	5	0	5	0	multi-exon	FALSE	canonical	3	7	junction_11	607.25013567123	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231092	92201575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92230608
ES_00044177	chr5	-	2716	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231372	92201575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ES_00044178	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231517	92202358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ES_00044179	chr5	-	828	4	FSM	ENSMUSG00000029405.17	ENSMUST00000202123.4	665	4	-163	0	-163	0	multi-exon	FALSE	canonical	3	1743	junction_1	39.9082280572148	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGAAGTGTTTGGTGA	NA	False	NA	NA	False	AATAAA	-31	NA	92221542	92214393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92214442_92216183_92216358_92218215_92218298_92221018
ES_00044182	chr5	-	742	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	-38	-68	-38	68	mono-exon	FALSE	NA	NA	NA	NA	NA	675	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTCGTGGATGATTATA	NA	False	NA	NA	False	AATAAA	-44	NA	92288826	92288084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92288100_92288800
ES_00044183	chr5	-	2408	11	FSM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	0	6	0	-1	multi-exon	FALSE	canonical	3	29	junction_5	5.44885309033011	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACGAGTAAGGTCTGAGTG	9198	False	NA	-7	True	NA	NA	NA	92426029	92405523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424943_92425770
ES_00044188	chr5	-	2352	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583078	92563398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
ES_00044190	chr5	-	1028	4	FSM	ENSMUSG00000034826.15	ENSMUST00000122893.2	631	4	-148	-249	-20	249	multi-exon	FALSE	canonical	3	581	junction_1	53.8908361618395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCCTGCCTCAAAAACTC	NA	False	NA	NA	False	NA	NA	NA	92583098	92575630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92576186_92578659_92578813_92578897_92578982_92582862
ES_00044192	chr5	-	3963	1	FSM	ENSMUSG00000045314.6	ENSMUST00000061328.6	3900	1	-47	-16	-47	16	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTCTCTCCATTTCTCT	16	False	NA	12	True	NA	NA	NA	93192928	93188965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_93189000_93192900
ES_00044193	chr5	-	2804	7	FSM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_6	48.6052694902746	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTGTAGGAGTTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	93354354	93329791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
ES_00044194	chr5	-	2448	1	FSM	ENSMUSG00000106870.2	ENSMUST00000201581.2	1903	1	-224	-321	-224	321	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGGAGGAAAGCAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	93333841	93331393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_93331400_93333800
ES_00044198	chr5	-	9127	12	FSM	ENSMUSG00000034724.19	ENSMUST00000155901.8	8564	12	-563	0	-563	0	multi-exon	FALSE	canonical	3	19	junction_9	8.72253659368072	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTTGGGTTTTGAT	NA	False	NA	-1	True	AATAAA	-20	NA	96310412	96218191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869_96281992_96309795
ES_00044200	chr5	-	2257	7	FSM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	65.5709962983296	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTCATCCTCTTGTTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	97259432	97234838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_97236024_97243770_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
ES_00044201	chr5	-	3738	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-23	6289	0	2663	5prime_fragment	FALSE	canonical	3	151	junction_3	20.8096131631513	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGCCTGCCTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	97259455	97241127	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
ES_00044204	chr5	-	3426	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	0	-2	0	2	multi-exon	FALSE	canonical	3	176	junction_1	0	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTTAATAACATTT	NA	False	NA	-1	True	AATAAA	-21	NA	97540238	97530054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_97532729_97539486
ES_00044208	chr5	-	4917	19	FSM	ENSMUSG00000029334.15	ENSMUST00000161490.8	4968	19	51	0	51	0	multi-exon	FALSE	canonical	1	2	junction_7	5.01386965216377	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTGTCAATGGTGTC	NA	False	NA	2	True	ATTAAA	-29	NA	99185159	99077631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_99079965_99082187_99082255_99090012_99090076_99091272_99091396_99095229_99095394_99114370_99114513_99115585_99115676_99117795_99117933_99119710_99119865_99120966_99121066_99124294_99124364_99127624_99127720_99128944_99129023_99136145_99136210_99140175_99140282_99142390_99142505_99145204_99145372_99172252_99172727_99184781
ES_00044209	chr5	-	587	1	FSM	ENSMUSG00000089659.3	ENSMUST00000160819.2	420	1	-2	-165	-2	165	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTCTTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99170083	99169496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_99169500_99170100
ES_00044211	chr5	-	6811	9	FSM	ENSMUSG00000000568.16	ENSMUST00000172361.8	6811	9	0	0	0	0	multi-exon	FALSE	canonical	3	2301	junction_7	859.13983145935	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGCACTGTCTTTT	NA	False	NA	1	True	ATTAAA	-19	NA	100126797	100103793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ES_00044212	chr5	-	2000	8	FSM	ENSMUSG00000000568.16	ENSMUST00000019128.15	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_2	1208.23732295085	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAATCTATTAATTTAA	NA	False	NA	-10	True	AATAAA	-15	NA	100126796	100108456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ES_00044213	chr5	-	1670	8	FSM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	1800	junction_7	925.260845736521	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTCTTTTATCATCAGA	NA	False	NA	NA	False	AATAAA	-21	NA	100126776	100108856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ES_00044214	chr5	-	1537	7	FSM	ENSMUSG00000000568.16	ENSMUST00000072750.13	1537	7	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_2	1330.01989333493	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126794	100108860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ES_00044215	chr5	-	1842	2	FSM	ENSMUSG00000029328.16	ENSMUST00000135424.7	1842	2	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	-14	True	AATAAA	-18	NA	100183927	100181435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100182844_100183493
ES_00044216	chr5	-	3154	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	-14	True	AATAAA	-18	NA	100186728	100181435	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ES_00044218	chr5	-	2374	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	0	0	0	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186728	100182579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ES_00044219	chr5	-	2149	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTTCCTGCGTCAGGT	NA	False	NA	-20	True	AATAAA	-15	NA	100187523	100182585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ES_00044221	chr5	-	4015	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	1496	0	combination_of_known_junctions	FALSE	canonical	2	163	junction_5	148.488383384021	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	9107	False	NA	-7	True	ATTAAA	-19	NA	100555975	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892
ES_00044222	chr5	-	4206	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	2	466	junction_5	100.698448422967	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8091	False	NA	-7	True	ATTAAA	-19	NA	100564110	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ES_00044223	chr5	-	4167	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_14	184.506416148599	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8091	False	NA	-7	True	ATTAAA	-19	NA	100564110	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ES_00044230	chr5	-	4755	13	NIC	ENSMUSG00000118665.1	novel	4451	13	NA	NA	-26	941	combination_of_known_junctions	FALSE	canonical	3	30	junction_11	48.956542520439	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCATCTCCCAGTTCT	NA	False	NA	NA	False	TATAAA	-7	NA	100648519	100588958	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100633661_100633715_100648359
ES_00044232	chr5	-	4451	13	FSM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_11	17.2980409937722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTTTTGCATTTT	NA	False	NA	NA	False	AATAAA	-34	NA	100648493	100589899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100632998_100633715_100648359
ES_00044237	chr5	-	1540	6	NIC	ENSMUSG00000029319.9	novel	1743	7	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	79	junction_5	105.678758508983	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCGACTCTTCATTACAGC	NA	False	NA	0	True	AATAAA	-21	NA	100822113	100802587	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100821854
ES_00044239	chr5	-	4040	18	FSM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	21	-372	0	372	multi-exon	FALSE	canonical	3	40	junction_16	11.2714232774287	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAATACTCAAATCCTAT	NA	False	NA	NA	False	AATATA	-13	NA	100946443	100909638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
ES_00044240	chr5	-	3482	17	NIC	ENSMUSG00000035266.17	novel	3689	18	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_15	20.5143813884309	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	NA	False	NA	-1	True	ATTAAA	-20	NA	100946429	100910016	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100937991_100938103_100939202_100939276_100939642_100939844_100944219_100944929_100946159
ES_00044241	chr5	-	636	3	FSM	ENSMUSG00000035266.17	ENSMUST00000152554.2	637	3	0	1	0	-1	multi-exon	FALSE	canonical	3	61	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGAATCTGGGTCTTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	100930866	100926251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100926703_100927017_100927160_100930823
ES_00044242	chr5	-	2271	10	NNC	ENSMUSG00000035234.19	novel	1668	10	NA	NA	0	185	at_least_one_novel_splicesite	TRUE	non_canonical	3	44	junction_1	46.4088114238856	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCACACAGAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	100968806	100952872	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_100953529_100953556_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ES_00044243	chr5	-	1668	10	FSM	ENSMUSG00000035234.19	ENSMUST00000200657.5	1668	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968806	100953057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ES_00044244	chr5	-	2136	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	3	0	3	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968828	100953057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ES_00044252	chr5	-	3176	10	FSM	ENSMUSG00000029312.13	ENSMUST00000031254.9	3193	10	4	13	4	-13	multi-exon	FALSE	canonical	3	103	junction_9	11.7473401244707	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTAGTCTTTTCATTGTT	NA	False	NA	NA	False	AATAAA	-33	NA	104059121	104009928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058981
ES_00044253	chr5	-	3173	10	NNC	ENSMUSG00000029312.13	novel	3193	10	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_9	28.2991078688506	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTAGTCTTTTCATTGTT	NA	False	NA	NA	False	AATAAA	-33	NA	104059121	104009928	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034154_104058981
ES_00044257	chr5	-	1420	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	64	10172	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	83.4491461909587	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTGAGAACATCCTATC	NA	False	NA	NA	False	AATAAA	-4	NA	105007872	104950862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_104951336_104952168_104952309_104953146_104953426_104964564_104964626_104964862_104964990_105007532
ES_00044258	chr5	-	2897	5	FSM	ENSMUSG00000072774.11	ENSMUST00000186219.7	2904	5	7	0	7	0	multi-exon	FALSE	canonical	3	35	junction_4	90.557647385519	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007929	104961034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
ES_00044260	chr5	-	1932	2	FSM	ENSMUSG00000072774.11	ENSMUST00000191135.2	1923	2	0	-9	0	9	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTTTCCCAGGAAGAC	NA	False	NA	NA	False	AATAAA	-20	NA	105007659	104983576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_104985382_105007532
ES_00044261	chr5	-	283	3	Intergenic	novelGene_3200	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_2	14.5	32	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTCAAACTTCTAGAAG	1630	False	NA	NA	False	NA	NA	NA	105082154	105043233	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_105043263_105043499_105043627_105082027
ES_00044262	chr5	-	282	1	FSM	ENSMUSG00000106392.2	ENSMUST00000196461.2	282	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTTAGATTGGGCTACA	2355	False	NA	NA	False	NA	NA	NA	105137197	105136915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_105136900_105137200
ES_00044263	chr5	-	482	1	FSM	ENSMUSG00000067058.8	ENSMUST00000132586.2	393	1	-33	-56	-33	56	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTACTACTTCTTTGCT	NA	False	NA	NA	False	AATAAA	-39	NA	105945612	105945130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_105945100_105945600
ES_00044266	chr5	-	1937	4	FSM	ENSMUSG00000049606.17	ENSMUST00000112695.4	1915	4	0	-22	0	17	multi-exon	FALSE	canonical	3	25	junction_3	43.2897216438267	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTTATTTTTTTTATT	NA	False	NA	3	True	AATAAA	-36	NA	106844463	106764587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106766295_106767405_106767509_106814650_106814712_106844397
ES_00044267	chr5	-	5708	7	FSM	ENSMUSG00000049606.17	ENSMUST00000112698.8	5689	7	1	-20	1	17	multi-exon	FALSE	canonical	3	18	junction_4	39.4859327975026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTTATTTTTTTTATT	NA	False	NA	3	True	AATAAA	-36	NA	106844695	106764587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106784190_106784282_106786502_106814650_106814712_106844397
ES_00044268	chr5	-	5801	6	FSM	ENSMUSG00000049606.17	ENSMUST00000112696.8	5785	6	1	-17	1	17	multi-exon	FALSE	canonical	3	25	junction_5	33.3742415644161	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTTATTTTTTTTATT	NA	False	NA	3	True	AATAAA	-36	NA	106844695	106764587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106844397
ES_00044273	chr5	-	6256	1	FSM	ENSMUSG00000049606.17	ENSMUST00000200481.2	6256	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGCTGAAAAAATACCA	NA	False	NA	NA	False	NA	NA	NA	106842889	106836633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106836600_106842900
ES_00044276	chr5	-	6091	17	FSM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	0	-4	0	4	multi-exon	FALSE	canonical	3	17	junction_8	3.80788655293195	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATATCTGGTCATCACT	277	False	NA	-1	True	AATAAA	-24	NA	107437495	107254431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_107257624_107266284_107266393_107269225_107269274_107278326_107278445_107280598_107280896_107284784_107284944_107285395_107285537_107287634_107287788_107288249_107288579_107290222_107290413_107295891_107296040_107297655_107297825_107302117_107302302_107325670_107325809_107362758_107362944_107414059_107414217_107437120
ES_00044278	chr5	-	2018	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	-3	0	3	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCATAATTCTTTTTAA	NA	False	NA	NA	False	CATAAA	-30	NA	107745505	107696829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ES_00044279	chr5	-	1911	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	56.5136550744733	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCATTATACTTTATAC	NA	False	NA	NA	False	AATAAA	-17	NA	107745432	107696887	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ES_00044280	chr5	-	1054	7	FSM	ENSMUSG00000029276.14	ENSMUST00000148505.8	815	7	-80	-159	-7	159	multi-exon	FALSE	canonical	3	41	junction_3	84.0806491147372	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCAAAGCCTTCTAAATG	NA	False	NA	NA	False	GATAAA	-32	NA	107745512	107719986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ES_00044282	chr5	-	6105	18	NIC	ENSMUSG00000011831.17	novel	5849	18	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_7	27.3729844338649	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTCCTTAGATTATT	NA	False	NA	-1	True	ATTAAA	-19	NA	108017031	107892660	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_107896324_107912541_107912638_107936064_107936161_107938227_107938375_107943564_107943724_107945678_107945820_107946991_107947127_107960223_107960278_107961411_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
ES_00044286	chr5	-	2721	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTGATCAATATGTTT	NA	False	NA	NA	False	NA	NA	NA	108134951	108055918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
ES_00044287	chr5	-	1380	5	NNC	ENSMUSG00000063406.12	novel	3800	4	NA	NA	0	286	at_least_one_novel_splicesite	TRUE	canonical	3	145	junction_1	42.511763078	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	108280415	108269206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108269302_108271936_108272626_108273766_108273951_108277883_108277982_108280101
ES_00044288	chr5	-	3800	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	0	True	AATAAA	-31	NA	108280486	108269492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
ES_00044292	chr5	-	336	5	NNC	ENSMUSG00000050856.17	novel	371	4	NA	NA	0	37470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2013.68902763063	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGAATGAAAGGTTTTC	5553	False	NA	NA	False	NA	NA	NA	108582263	108543639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108543668_108581121_108581204_108581596_108581696_108581891_108581947_108582191
ES_00044294	chr5	-	390	5	NNC	ENSMUSG00000050856.17	novel	371	4	NA	NA	0	37470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2013.68902763063	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGAATGAAAGGTTTTC	5502	False	NA	NA	False	NA	NA	NA	108582314	108543639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108543668_108581118_108581204_108581596_108581696_108581891_108581947_108582191
ES_00044295	chr5	-	569	3	FSM	ENSMUSG00000050856.17	ENSMUST00000123184.2	563	3	0	-6	0	4	multi-exon	FALSE	canonical	3	3979	junction_1	613.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTTACTGTTTGCTT	5553	False	NA	4	True	AATAAA	-28	NA	108582263	108581105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108581204_108581596_108581696_108581891
ES_00044296	chr5	-	362	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	9	0	-7	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGGCTTCCTCTCTCT	5502	False	NA	-9	True	AATAAA	-15	NA	108582314	108581118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
ES_00044298	chr5	-	4746	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	0	-293	0	290	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCAGGACACTTGCC	NA	False	NA	NA	False	NA	NA	NA	108777605	108716986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ES_00044299	chr5	-	4819	26	FSM	ENSMUSG00000062234.15	ENSMUST00000145467.8	4487	26	-33	-299	-17	290	multi-exon	FALSE	canonical	3	15	junction_22	74.6631261065327	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCAGGACACTTGCC	NA	False	NA	NA	False	NA	NA	NA	108777638	108716986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ES_00044300	chr5	-	2269	11	FSM	ENSMUSG00000062234.15	ENSMUST00000156110.8	2269	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	110.523707863969	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCTTGTAAAGCACTTC	NA	False	NA	-25	True	ATTAAA	-26	NA	108739537	108717276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108733206_108733401_108739010_108739091_108739515
ES_00044301	chr5	-	3888	27	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_23	68.9824285147093	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCGTGCAGTGCTGGTAGT	NA	False	NA	NA	False	NA	NA	NA	108777621	108718038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764913_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ES_00044303	chr5	-	4936	23	FSM	ENSMUSG00000004815.13	ENSMUST00000053913.13	4938	23	2	0	2	0	multi-exon	FALSE	canonical	3	33	junction_4	9.2499720794754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACCCTTCACTGCAAA	NA	False	NA	NA	False	AATAAA	-11	NA	108808675	108794558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108796678_108797010_108797164_108797243_108797356_108797452_108797600_108797690_108797792_108798066_108798246_108798355_108798505_108798682_108798835_108800259_108800376_108801046_108801086_108801501_108801653_108801949_108802012_108802221_108802277_108802409_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709_108803836_108803911_108803998_108804289_108804390_108806071_108806152_108808308
ES_00044304	chr5	-	796	6	FSM	ENSMUSG00000004815.13	ENSMUST00000139598.2	796	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	8.21218606705912	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTATCCTGTCCATTCC	NA	False	NA	NA	False	NA	NA	NA	108803863	108802409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709
ES_00044305	chr5	-	665	3	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	2067	1557	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	21	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTGCGCGTTATATTTGT	NA	False	NA	NA	False	NA	NA	NA	109699955	109698200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109698395_109699328_109699371_109699526
ES_00044307	chr5	-	587	4	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	886	1632	multi-exon	FALSE	canonical	3	31	junction_2	12.2292908852294	67	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCAGTAAGGCTCTCGGG	NA	False	NA	NA	False	AATAAA	-30	NA	109701136	109698125	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_109698395_109699328_109699371_109700490_109700560_109700929
ES_00044309	chr5	-	1415	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	0	-10	0	10	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTAATTCCTGACCAG	NA	False	NA	3	True	NA	NA	NA	109706802	109702564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
ES_00044310	chr5	-	1346	8	NNC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	-124	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	232.666530222364	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGCCATCATTAATTCC	NA	False	NA	-4	True	NA	NA	NA	109706983	109702571	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706913
ES_00044311	chr5	-	1454	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	-124	-7	-124	3	multi-exon	FALSE	canonical	1	25	junction_7	229.794229159703	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGCCATCATTAATTCC	NA	False	NA	-4	True	NA	NA	NA	109706983	109702571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
ES_00044312	chr5	-	1110	5	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	2138	0	-325	0	3prime_fragment	FALSE	canonical	1	50	junction_4	239.958720408324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109704664	109702574	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285
ES_00044314	chr5	-	659	3	ISM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	-20	3824	-20	-3824	5prime_fragment	FALSE	canonical	3	55	junction_1	18.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGTCAGGTGTCTGA	6111	False	NA	NA	False	NA	NA	NA	109838927	109826234	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_109826441_109826628_109826756_109838601
ES_00044315	chr5	-	2599	4	NNC	ENSMUSG00000072762.10	novel	2001	4	NA	NA	-93168	480	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	17.326921891156	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATATGCCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	109992920	109883375	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109885666_109886815_109886877_109933207_109933335_109992799
ES_00044316	chr5	-	610	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	0	-11	0	11	multi-exon	FALSE	canonical	3	125	junction_2	15.5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCTCACAAATCCCCAT	7657	False	NA	NA	False	NA	NA	NA	109899752	109886685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_109886877_109887064_109887192_109899460
ES_00044317	chr5	-	363	1	FSM	ENSMUSG00000049477.6	ENSMUST00000061226.6	363	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACACAGAGTTACAGGT	1656	False	NA	NA	False	NA	NA	NA	109905753	109905390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_109905400_109905800
ES_00044318	chr5	-	2014	4	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	6	-12825	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	67.6214955961983	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTGGTCTTGGTATTT	NA	False	NA	-2	True	NA	NA	NA	109944158	109930097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109931814_109932961_109933023_109933207_109933335_109944048
ES_00044319	chr5	-	645	1	FSM	ENSMUSG00000105044.2	ENSMUST00000197379.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGGCTACATAGAGAAACC	NA	False	NA	NA	False	NA	NA	NA	109982011	109981366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_109981400_109982000
ES_00044320	chr5	-	853	4	Intergenic	novelGene_3216	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	110	junction_1	60.4997704311531	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTGCTTCTCATGGTC	NA	False	NA	NA	False	NA	NA	NA	109992906	109982909	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_109983468_109984614_109984676_109984863_109984991_109992799
ES_00044321	chr5	-	446	3	Intergenic	novelGene_3217	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	209	junction_2	23	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATACCTCAATGTCAGGTG	NA	False	NA	NA	False	NA	NA	NA	109992912	109984469	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_109984676_109984863_109984991_109992799
ES_00044322	chr5	-	255	1	FSM	ENSMUSG00000090963.3	ENSMUST00000167969.2	255	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCCTATGAATGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	110194352	110194097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110194100_110194400
ES_00044323	chr5	-	770	3	NNC	ENSMUSG00000109771.2	novel	3457	3	NA	NA	3545	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCCTTTTTCTTCCTGC	NA	False	NA	4	True	AATAAA	-21	NA	110238722	110223994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110224622_110238180_110238289_110238687
ES_00044325	chr5	-	3597	4	NNC	ENSMUSG00000109771.2	novel	3523	4	NA	NA	-5446	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	20.6774165590278	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	-2	True	AATAAA	-15	NA	110234200	110224000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110227247_110228349_110228411_110228603_110228731_110234037
ES_00044326	chr5	-	1173	2	Genic_Genomic	ENSMUSG00000081865.2	novel	828	1	NA	NA	0	35214	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTTTCCTAGGAGGGAC	3140	False	NA	NA	False	NA	NA	NA	110266715	110230673	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_110230699_110265567
ES_00044327	chr5	-	1621	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	0	-4	0	4	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTTGTATAGGTGACT	NA	False	NA	0	True	ATTAAA	-32	NA	110256063	110251836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
ES_00044329	chr5	-	1370	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	80.7902297588625	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCTGGTTTTGTATAGG	NA	False	NA	-5	True	ATTAAA	-27	NA	110256026	110251841	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110255721
ES_00044331	chr5	-	522	1	FSM	ENSMUSG00000081865.2	ENSMUST00000118871.2	828	1	-84	390	-84	-390	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGACAAGGTTCCACAGA	3056	False	NA	NA	False	NA	NA	NA	110266799	110266277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110266300_110266800
ES_00044332	chr5	-	2061	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	-17	0	-8	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAAAGTAGTGTTTAGA	NA	False	NA	-3	True	AATAAA	-35	NA	110417753	110407003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ES_00044333	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	False	NA	5	True	AATAAA	-43	NA	110417779	110406995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ES_00044335	chr5	-	1037	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	0	4	0	-4	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTGGTTTCTCAGCAC	NA	False	NA	0	True	AATAAA	-24	NA	110434052	110422151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
ES_00044336	chr5	-	936	4	FSM	ENSMUSG00000029499.12	ENSMUST00000155266.2	700	4	-227	-9	-62	-4	multi-exon	FALSE	canonical	3	34	junction_2	226.6686274425	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTGGTTTCTCAGCAC	NA	False	NA	0	True	AATAAA	-24	NA	110434114	110422151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110422495_110425520_110425641_110431511_110431620_110433749
ES_00044338	chr5	-	4866	19	NNC	ENSMUSG00000043323.18	novel	3934	18	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_18	40.9772595773453	359	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTCCAGTGTTTTGT	NA	False	NA	0	True	GATAAA	-21	NA	110596468	110509618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110584479_110584595_110595745
ES_00044340	chr5	-	4820	19	FSM	ENSMUSG00000043323.18	ENSMUST00000069483.12	4720	19	-99	-1	0	1	multi-exon	FALSE	canonical	3	5	junction_10	76.4440608840507	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTCCAGTGTTTTGT	NA	False	NA	0	True	GATAAA	-21	NA	110596468	110509618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526294_110526364_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110595745
ES_00044341	chr5	-	2695	2	FSM	ENSMUSG00000043323.18	ENSMUST00000198415.3	2692	2	0	-3	0	3	multi-exon	FALSE	canonical	3	598	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTTATTATTTAAGTAG	NA	False	NA	2	True	AATAAA	-31	NA	110581187	110577737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110580012_110580766
ES_00044343	chr5	-	2708	3	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4428	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	299	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTTATTATTTAAGTAG	NA	False	NA	2	True	AATAAA	-31	NA	110585615	110577737	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110580012_110580766_110580968_110585382
ES_00044344	chr5	-	2823	4	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4428	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	249.876413897395	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTTATTATTTAAGTAG	NA	False	NA	2	True	AATAAA	-31	NA	110585615	110577737	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110580012_110580766_110580968_110584479_110584595_110585382
ES_00044345	chr5	-	3213	4	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	246.066386706244	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTTATTATTTAAGTAG	NA	False	NA	2	True	AATAAA	-31	NA	110596368	110577737	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110580012_110580766_110580968_110584479_110584595_110595745
ES_00044347	chr5	-	2075	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_9	55.5126847059778	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCTAAATGTTTTT	8841	False	NA	NA	False	NA	NA	NA	110801283	110796283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
ES_00044348	chr5	-	665	6	FSM	ENSMUSG00000033294.12	ENSMUST00000150100.8	665	6	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_4	38.5818610230248	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAGATAGGCTGCTGAACA	8999	False	NA	NA	False	NA	NA	NA	110801125	110798935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
ES_00044349	chr5	-	10904	53	NIC	ENSMUSG00000029505.18	novel	10608	52	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_41	25.0433942913722	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTTGTTCTGTCTTAA	NA	False	NA	-5	True	AATAAA	-14	NA	110918451	110812243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617_110846783_110848387_110848631_110849486_110849657_110851317_110851485_110852747_110852935_110855794_110855932_110856028_110856204_110856639_110856810_110858896_110859034_110866952_110867131_110867298_110867490_110868601_110868710_110872287_110872378_110874756_110874815_110875394_110875445_110877099_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
ES_00044350	chr5	-	10608	52	FSM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_30	27.4207396455065	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTGTCTTAATAAAC	NA	False	NA	0	True	AATAAA	-19	NA	110918393	110812238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617_110846783_110849486_110849657_110851317_110851485_110852747_110852935_110855794_110855932_110856028_110856204_110856639_110856810_110858896_110859034_110866952_110867131_110867298_110867490_110868601_110868710_110872287_110872378_110874756_110874815_110875394_110875445_110877099_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
ES_00044352	chr5	-	10952	54	NNC	ENSMUSG00000029505.18	novel	10608	52	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_53	28.6990993838967	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGTTCTGTCTTAATAAA	NA	False	NA	-1	True	AATAAA	-18	NA	110918393	110812239	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617_110846783_110848387_110848631_110849486_110849657_110851317_110851485_110852747_110852935_110855794_110855932_110856028_110856204_110856639_110856810_110858896_110859034_110866952_110867131_110867298_110867490_110868601_110868710_110872287_110872378_110874756_110874815_110875394_110875445_110877099_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110916176_110916279_110918357
ES_00044353	chr5	-	3136	5	FSM	ENSMUSG00000029505.18	ENSMUST00000146458.9	3673	5	0	537	0	-139	multi-exon	FALSE	canonical	3	52	junction_3	2.77263412660235	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTCTTTCTTTTCTTTCC	NA	False	NA	NA	False	ACTAAA	-43	NA	110918451	110886074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
ES_00044354	chr5	-	1389	4	FSM	ENSMUSG00000029507.17	ENSMUST00000112426.8	1389	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	242.644229731972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110927833	110921532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552
ES_00044355	chr5	-	2986	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	0	-1172	0	1172	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGAGTGTGTGTA	NA	False	NA	-1	True	AATAAA	-17	NA	110928462	110920360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
ES_00044356	chr5	-	1868	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
ES_00044357	chr5	-	1511	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	-1	0	0	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928481	110921532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
ES_00044361	chr5	-	5214	28	FSM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	0	-1	0	1	multi-exon	TRUE	canonical	3	530	junction_12	186.450389110485	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTCAATTTCATCCT	NA	False	NA	-1	True	AATAAA	-16	NA	110957963	110932352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
ES_00044363	chr5	-	3581	28	FSM	ENSMUSG00000029512.12	ENSMUST00000200299.2	3581	28	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_11	217.248929557064	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGCTGCCAGCCAACTC	NA	False	NA	NA	False	NA	NA	NA	110957919	110933959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938821_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
ES_00044365	chr5	-	437	5	FSM	ENSMUSG00000043510.13	ENSMUST00000144850.8	434	5	0	-3	0	3	multi-exon	FALSE	canonical	3	33	junction_3	153.759552548777	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTCTGCTAATTGGAAA	NA	False	NA	-4	True	AATAAA	-17	NA	110984186	110976942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983840_110983936_110984172
ES_00044368	chr5	-	742	5	FSM	ENSMUSG00000085271.8	ENSMUST00000129065.8	729	5	6	-19	6	0	multi-exon	FALSE	canonical	2	4	junction_1	2.54950975679639	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGCAAAATACTGGAGC	NA	False	NA	NA	False	AATAAA	-31	NA	111909585	111882149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_111882496_111886992_111887080_111887701_111887776_111895707_111895859_111909501
ES_00044369	chr5	-	1152	7	NIC	ENSMUSG00000029346.13	novel	1064	7	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	36.3168923046379	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTTGGTTTACAGTGCT	NA	False	NA	-9	True	AATAGA	-12	NA	112490881	112485259	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ES_00044371	chr5	-	1113	7	FSM	ENSMUSG00000029346.13	ENSMUST00000031289.7	1110	7	0	-3	0	3	multi-exon	FALSE	canonical	3	22	junction_1	42.3848112207926	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACAGTGCTGTTTA	NA	False	NA	-4	True	AATAGA	-17	NA	112490906	112485254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_112485608_112485841_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ES_00044372	chr5	-	784	3	FSM	ENSMUSG00000029348.12	ENSMUST00000197585.5	1086	3	302	0	25	0	multi-exon	FALSE	canonical	3	6	junction_2	4.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCGCGAGCAGCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	112541865	112539676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_112540122_112541325_112541450_112541650
ES_00044373	chr5	-	6535	21	FSM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	0	-2	0	2	multi-exon	FALSE	canonical	3	54	junction_7	10.5322124931089	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTGAGGCTGACATCTC	539	False	NA	-2	True	AATAAA	-20	NA	113163380	113058345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
ES_00044374	chr5	-	4477	21	FSM	ENSMUSG00000042249.12	ENSMUST00000200332.5	4455	21	-22	0	-22	0	multi-exon	FALSE	canonical	1	4	junction_18	18.223885425452	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTTTATTATTTATTT	517	False	NA	-9	True	ATTAAA	-17	NA	113163402	113060464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117175_113121372_113121447_113133630_113133708_113163232
ES_00044379	chr5	-	4184	17	NNC	ENSMUSG00000042216.14	novel	5161	25	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_16	19.3083531146496	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGGTCTGGTTATTTGT	NA	False	NA	0	True	AATATA	-19	NA	113428459	113391085	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113428416
ES_00044380	chr5	-	5153	25	FSM	ENSMUSG00000042216.14	ENSMUST00000048112.13	5161	25	8	0	-1	0	multi-exon	FALSE	canonical	3	12	junction_24	23.4519307425968	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGGTCTGGTTATTTGT	NA	False	NA	0	True	AATATA	-19	NA	113458644	113391085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492_113433561_113434640_113434794_113435090_113435254_113436689_113436766_113458413_113458458_113458539
ES_00044382	chr5	-	1103	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	-1	0	1	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGAGTGGTGTCTGTCCA	NA	False	NA	NA	False	ATTAAA	-19	NA	113428453	113421816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
ES_00044384	chr5	-	852	2	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCATGTCTATGTGCA	NA	False	NA	-7	True	NA	NA	NA	113734558	113711253	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_113711932_113734384
ES_00044385	chr5	-	314	2	Intergenic	novelGene_3229	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	86	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGGGTTCTATCGTAGC	NA	False	NA	-1	True	NA	NA	NA	113734558	113734148	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_113734289_113734384
ES_00044387	chr5	-	4633	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	-186	0	-186	0	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	2793	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTGCATTGCAGCT	NA	False	NA	-16	True	ATTAAA	-16	NA	113910757	113880506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
ES_00044393	chr5	-	3491	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046819	113980496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
ES_00044397	chr5	-	8433	15	FSM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	0	3	0	-3	multi-exon	FALSE	canonical	3	321	junction_13	43.65589003438	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGTGTATGCTATGCT	NA	False	NA	-14	True	AATAAA	-16	NA	114131955	114075157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114127706_114127748_114131724
ES_00044398	chr5	-	5607	14	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6196	-111	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_13	82.9598177489967	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGATTTATTTTCCCACT	NA	False	NA	NA	False	AATACA	-15	NA	114111013	114077936	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114110788
ES_00044402	chr5	-	464	5	FSM	ENSMUSG00000042078.15	ENSMUST00000149480.2	666	5	0	202	0	-202	multi-exon	FALSE	canonical	3	12	junction_4	1.92028643696715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGGCTAGGCCAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	114180942	114173213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866
ES_00044403	chr5	-	908	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	0	-9	0	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7978	False	NA	-2	True	AATAAA	-22	NA	114266279	114261986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
ES_00044404	chr5	-	1028	4	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2503	-1	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	211.98480029369	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTGTATTTGGGGGGG	5475	False	NA	-12	True	AATAAA	-12	NA	114268782	114261996	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114268516
ES_00044405	chr5	-	231	1	Intergenic	novelGene_3233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGTTTTTCGAGACAG	NA	False	NA	NA	False	NA	NA	NA	114307324	114307093	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_114307100_114307300
ES_00044406	chr5	-	3037	10	FSM	ENSMUSG00000042002.12	ENSMUST00000044790.12	3016	10	-18	-3	-18	3	multi-exon	FALSE	canonical	2	4	junction_3	3.91893157523298	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACTCAGTGTGGATTT	NA	False	NA	1	True	AATAAA	-16	NA	114411886	114392221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114393812_114394619_114395013_114396568_114396777_114397810_114397908_114398410_114398539_114398926_114399047_114399135_114399264_114401069_114401216_114411033_114411123_114411748
ES_00044407	chr5	-	3110	7	FSM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	0	-7	0	7	multi-exon	FALSE	canonical	3	95	junction_4	16.3401346383682	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTCTTTTCGAGATCGC	NA	False	NA	9	True	AATAAA	-31	NA	114518569	114501620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114512956_114513171_114518486
ES_00044409	chr5	-	773	6	FSM	ENSMUSG00000001098.16	ENSMUST00000134173.8	777	6	4	0	4	0	multi-exon	FALSE	canonical	0	0	junction_5	42.5064700957395	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGAGCGCGTGAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	114510199	114503766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114510093
ES_00044410	chr5	-	3023	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	0	-3	0	3	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGCTCATCTCTCTCC	NA	False	NA	5	True	AATAAA	-39	NA	114582121	114569091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ES_00044412	chr5	-	1277	8	FSM	ENSMUSG00000029575.18	ENSMUST00000123256.3	1277	8	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	16.4738506458581	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCAGGGAGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	114582053	114572688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ES_00044414	chr5	-	1784	6	NNC	ENSMUSG00000011884.14	novel	1762	5	NA	NA	0	71572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	559.147350883468	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAACAAAAAAAACCCAGC	NA	False	NA	NA	False	NA	NA	NA	114829045	114735886	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_114735914_114807463_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
ES_00044415	chr5	-	1791	6	NNC	ENSMUSG00000011884.14	novel	1762	5	NA	NA	0	71580	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	559.147350883468	244	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAGCCAAATGCC	NA	False	NA	NA	False	NA	NA	NA	114829045	114735878	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_114735913_114807463_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
ES_00044421	chr5	-	3711	6	FSM	ENSMUSG00000041890.18	ENSMUST00000146044.8	3707	6	0	-4	0	0	multi-exon	FALSE	canonical	3	47	junction_4	77.0049349067967	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGCCCCCTCTAGTT	2305	False	NA	-3	True	AATAAA	-20	NA	114881929	114865467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114881791
ES_00044422	chr5	-	4942	18	FSM	ENSMUSG00000041890.18	ENSMUST00000043283.14	4938	18	0	-4	0	0	multi-exon	FALSE	canonical	3	47	junction_4	65.8330172418791	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGCCCCCTCTAGTT	NA	False	NA	-3	True	AATAAA	-20	NA	114911553	114865467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ES_00044423	chr5	-	5032	19	FSM	ENSMUSG00000041890.18	ENSMUST00000112185.9	5032	19	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_6	46.75943160951	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGCCCCCTCTAGTT	NA	False	NA	-3	True	AATAAA	-20	NA	114911556	114865467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ES_00044424	chr5	-	2984	20	FSM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	54.5305322490843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	-2	True	TATAAA	-14	NA	114911523	114867635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ES_00044425	chr5	-	3170	20	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-156	0	combination_of_known_junctions	FALSE	canonical	3	114	junction_6	47.232729625996	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	-2	True	TATAAA	-14	NA	114911712	114867635	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ES_00044427	chr5	-	3033	1	FSM	ENSMUSG00000041890.18	ENSMUST00000201442.2	3033	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGGAAAAAGAAGGA	4811	False	NA	NA	False	NA	NA	NA	114879423	114876390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114876400_114879400
ES_00044431	chr5	-	1323	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	10	0	10	0	multi-exon	FALSE	canonical	3	46	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGCTGTTCTGTGC	729	False	NA	0	True	ATTAAA	-23	NA	114952027	114946256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114947393_114951840
ES_00044432	chr5	-	444	2	FSM	ENSMUSG00000072694.9	ENSMUST00000140374.2	444	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGTAAAGACATGTCCAT	9601	False	NA	NA	False	NA	NA	NA	114961521	114947096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114947393_114961373
ES_00044433	chr5	-	658	2	NIC	ENSMUSG00000072694.9	novel	579	2	NA	NA	-41	48	combination_of_known_splicesites	FALSE	canonical	3	129	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGGAAGCTGCTTTTC	9552	False	NA	45	True	NA	NA	NA	114961570	114950805	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_114951267_114961373
ES_00044434	chr5	-	579	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	750	False	NA	-3	True	NA	NA	NA	114952006	114950853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114951267_114951840
ES_00044435	chr5	-	947	2	FSM	ENSMUSG00000072694.9	ENSMUST00000234046.2	947	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTCTTGTGGGTGAT	9593	False	NA	2	True	NA	NA	NA	114961529	114959995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114960787_114961373
ES_00044436	chr5	-	230	1	FSM	ENSMUSG00000082052.2	ENSMUST00000117738.2	643	1	482	-69	482	69	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCTCCTCTAGCAAGGAA	6531	False	NA	NA	False	AAGAAA	-33	NA	114966794	114966564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114966600_114966800
ES_00044438	chr5	-	393	1	FSM	ENSMUSG00000086167.4	ENSMUST00000148801.2	372	1	-28	7	-28	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCCAATGGGGGAAAAAAAA	2378	False	NA	NA	False	NA	NA	NA	115191927	115191534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115191500_115191900
ES_00044439	chr5	-	388	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	-43	-51	-43	14	mono-exon	FALSE	NA	NA	NA	NA	NA	794	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCTGTGATGGCCA	NA	False	NA	-1	True	AATAAA	-27	NA	115241623	115241235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115241200_115241600
ES_00044441	chr5	-	3636	5	FSM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	17	6	17	-6	multi-exon	FALSE	canonical	3	283	junction_1	7.58287544405155	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGCCTCCTGATT	NA	False	NA	4	True	AATAAA	-21	NA	115273017	115260614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115263560_115265069_115265243_115265360_115265473_115268525_115268640_115272725
ES_00044444	chr5	-	1373	7	FSM	ENSMUSG00000029544.17	ENSMUST00000031519.14	1370	7	0	-3	0	3	multi-exon	FALSE	canonical	3	35	junction_6	80.5826008239716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTGGTCCTTGCTTTGTG	9907	False	NA	2	True	AATAAA	-23	NA	115324367	115306744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115324070
ES_00044445	chr5	-	1070	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2662	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7494	False	NA	-1	True	AATAAA	-20	NA	115327029	115306747	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
ES_00044446	chr5	-	1620	6	FSM	ENSMUSG00000029544.17	ENSMUST00000112113.8	1621	6	4	-3	4	3	multi-exon	FALSE	canonical	3	43	junction_5	70.6693710174358	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTGGTCCTTGCTTTGTG	8767	False	NA	2	True	AATAAA	-23	NA	115332436	115306744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115331712
ES_00044447	chr5	-	838	3	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	8079	-26	7916	1	3prime_fragment	FALSE	canonical	3	234	junction_2	2	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGGTGGTCCTTGCTTTG	2364	False	NA	0	True	AATAAA	-21	NA	115311402	115306746	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_115307208_115310817_115310966_115311173
ES_00044448	chr5	-	1089	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-666	3	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_5	78.9926578866669	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTGGTCCTTGCTTTGTG	8097	False	NA	2	True	AATAAA	-23	NA	115333106	115306744	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115332913
ES_00044450	chr5	-	231	2	Antisense	novelGene_ENSMUSG00000083875.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGTCAGAGGAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	115406194	115360141	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_115360174_115405995
ES_00044453	chr5	-	3112	17	FSM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	0	0	0	0	multi-exon	FALSE	canonical	3	1263	junction_14	135.987361545108	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	-20	True	AATAAA	-20	NA	115410954	115379828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
ES_00044454	chr5	-	328	2	FSM	ENSMUSG00000041740.17	ENSMUST00000128954.2	657	2	0	329	0	-329	multi-exon	FALSE	canonical	3	1761	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATCCTTTGCTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	115384134	115382079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115382181_115383907
ES_00044456	chr5	-	2030	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	1209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCTGGCTCAAAAACAAAAT	NA	False	NA	NA	False	AATAAA	-33	NA	115439058	115435168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115436893_115438571_115438710_115438890
ES_00044457	chr5	-	729	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438971	115436563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115436893_115438571
ES_00044459	chr5	-	327	1	Intergenic	novelGene_3242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAACA	6199	False	NA	NA	False	NA	NA	NA	115458414	115458087	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_115458100_115458400
ES_00044460	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	3.5	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	9709	False	NA	-1	True	NA	NA	NA	115479237	115471297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115472654_115473525_115473630_115478900
ES_00044462	chr5	-	759	2	FSM	ENSMUSG00000041697.10	ENSMUST00000137766.2	620	2	-127	-12	-60	-3	multi-exon	FALSE	canonical	3	7302	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGGACGGTACGATTT	4794	False	NA	-29	True	AATAAA	-23	NA	115487100	115483703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115483986_115486623
ES_00044464	chr5	-	1564	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112066.2	1794	5	359	-129	0	129	multi-exon	FALSE	canonical	3	34	junction_3	4.96865172858795	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCTAGAGAGAATGGCTA	9379	False	NA	NA	False	NA	NA	NA	115622425	115615939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622390
ES_00044468	chr5	-	1877	3	FSM	ENSMUSG00000041609.17	ENSMUST00000118576.8	1874	3	0	-3	0	1	multi-exon	FALSE	canonical	3	4	junction_2	14.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCTCAGTTCCTGGG	NA	False	NA	0	True	AATAAA	-17	NA	115791045	115786232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115787629_115789877_115789999_115790685
ES_00044469	chr5	-	3027	9	FSM	ENSMUSG00000041609.17	ENSMUST00000055408.13	3026	9	0	-1	0	1	multi-exon	FALSE	canonical	3	12	junction_3	5.84032319311183	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCTCAGTTCCTGGG	NA	False	NA	0	True	AATAAA	-17	NA	115869680	115786232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115787629_115789877_115789999_115793959_115794091_115800758_115800978_115801765_115801946_115808212_115808360_115811138_115811256_115862599_115862816_115869180
ES_00044470	chr5	-	3762	10	NIC	ENSMUSG00000041609.17	novel	3026	9	NA	NA	-591	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	7.26907877057606	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCTCAGTTCCTGGG	NA	False	NA	0	True	AATAAA	-17	NA	115870271	115786232	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_115787629_115789877_115789999_115793959_115794091_115799433_115799578_115800758_115800978_115801765_115801946_115808212_115808360_115811138_115811256_115862599_115862816_115869180
ES_00044472	chr5	-	690	4	FSM	ENSMUSG00000041609.17	ENSMUST00000148627.2	2089	4	230	1169	-36	-1169	multi-exon	FALSE	canonical	3	13	junction_1	6.37704215656966	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCACCCCCGTTTCACA	NA	False	NA	NA	False	NA	NA	NA	115808359	115799433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115799578_115800758_115800978_115801765_115801946_115808212
ES_00044474	chr5	-	2089	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162521	116151644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
ES_00044475	chr5	-	2005	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	25	-4	-21	0	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162542	116151644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
ES_00044477	chr5	-	276	2	FSM	ENSMUSG00000084921.2	ENSMUST00000132130.2	531	2	0	255	0	-255	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCTTTGGTTGACCTG	NA	False	NA	NA	False	NA	NA	NA	116447419	116443995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_116444251_116447398
ES_00044479	chr5	-	2672	2	FSM	ENSMUSG00000063919.12	ENSMUST00000139425.2	2798	2	126	0	126	0	multi-exon	FALSE	canonical	1	2	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTGTATATCTTTTTTT	7084	False	NA	NA	False	NA	NA	NA	116584777	116580490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_116582934_116584548
ES_00044481	chr5	-	2430	12	FSM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	0	-5	0	5	multi-exon	FALSE	canonical	3	565	junction_3	37.0610396664344	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGGTCTGTTTCTTCTC	NA	False	NA	1	True	GATAAA	-23	NA	117254063	117229739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
ES_00044485	chr5	-	2417	13	FSM	ENSMUSG00000066900.12	ENSMUST00000166397.3	1694	13	115	-838	0	81	multi-exon	FALSE	canonical	3	113	junction_1	144.428375174533	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGCATCTTGACAGCCC	NA	False	NA	77	True	NA	NA	NA	117254063	117229663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117230922_117231010_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
ES_00044487	chr5	-	1247	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	0	-7	0	7	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGTATTTCCTTCCTGTGT	NA	False	NA	-10	True	AATAAA	-22	NA	117425690	117420711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
ES_00044490	chr5	-	3751	9	FSM	ENSMUSG00000029363.15	ENSMUST00000150962.8	3751	9	0	0	0	0	multi-exon	TRUE	canonical	3	1613	junction_5	131.535582163155	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTGTGTGAGGCGTCT	NA	False	NA	NA	False	AATATA	-16	NA	117527087	117516469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117518887_117519900_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ES_00044494	chr5	-	4998	11	FSM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	0	2	0	-2	multi-exon	FALSE	canonical	3	339	junction_8	26.290682760248	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTCGTGTCACAC	NA	False	NA	NA	False	AATAAA	-42	NA	118293529	118203031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_118206295_118206669_118206781_118208410_118208585_118215641_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
ES_00044495	chr5	-	1966	8	FSM	ENSMUSG00000032867.9	ENSMUST00000201545.2	1937	8	-33	4	5	-4	multi-exon	FALSE	canonical	3	339	junction_5	29.5476094547392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTCCGGTCCAGATTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	118293524	118215120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
ES_00044496	chr5	-	4425	11	FSM	ENSMUSG00000032850.17	ENSMUST00000121369.8	4431	11	8	-2	8	2	multi-exon	FALSE	canonical	3	9	junction_8	4.80520551069359	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATCTGTGAGTCACTG	NA	False	NA	NA	False	AATAAA	-19	NA	118383173	118328804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914_118381097_118383036
ES_00044502	chr5	-	4713	28	FSM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	0	-1	0	1	multi-exon	TRUE	canonical	2	12	junction_13	5.06365515872966	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCAGCCTTTGATTTCC	9183	False	NA	2	True	AATAAA	-23	NA	120726738	120672216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280_120698409_120723249_120723494_120726567
ES_00044503	chr5	-	1556	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	19	-2	0	2	multi-exon	FALSE	canonical	3	77	junction_2	1.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGTGTGTTACTTTTTCC	6334	False	NA	NA	False	ATTAAA	-22	NA	120750635	120747120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120748028_120749442_120749795_120750338
ES_00044504	chr5	-	1670	4	FSM	ENSMUSG00000029600.11	ENSMUST00000177800.8	1668	4	0	-2	0	2	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGTGTGTTACTTTTTCC	6315	False	NA	NA	False	ATTAAA	-22	NA	120750654	120747120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
ES_00044506	chr5	-	2961	8	FSM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	31.3453443472057	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120833468	120818267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474
ES_00044507	chr5	-	2741	9	NNC	ENSMUSG00000029603.16	novel	4035	10	NA	NA	-494	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	44.7896123559917	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120833962	120818267	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820632_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120833903
ES_00044508	chr5	-	2785	9	NNC	ENSMUSG00000029603.16	novel	4035	10	NA	NA	-1078	20	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	41.4123698307643	5482	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGTGCTGGGTGACTGT	NA	False	NA	2	True	AATAAA	-36	NA	120834546	120818246	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120834452
ES_00044509	chr5	-	3782	10	FSM	ENSMUSG00000029603.16	ENSMUST00000031607.7	4035	10	252	1	252	0	multi-exon	FALSE	canonical	1	2	junction_8	46.8325095485741	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120849740	120818267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120848119_120849041_120849549
ES_00044510	chr5	-	305	1	FSM	ENSMUSG00000029603.16	ENSMUST00000201264.2	1831	1	16	1510	16	-307	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCAAACCCTCATCTTC	NA	False	NA	NA	False	NA	NA	NA	120820128	120819823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120819800_120820100
ES_00044513	chr5	-	219	1	Intergenic	novelGene_3257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAAGTGTATCCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	120992252	120992033	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_120992000_120992300
ES_00044514	chr5	-	1840	7	FSM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	0	137	0	-137	multi-exon	FALSE	canonical	3	61	junction_5	116.597241248096	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACACATGTAACTTTGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	121025645	121014341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835_121024125_121025442
ES_00044515	chr5	-	1128	4	FSM	ENSMUSG00000066861.15	ENSMUST00000161809.2	769	4	-137	-222	-137	0	multi-exon	FALSE	canonical	3	92	junction_3	120.052766176655	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121017803	121014784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162
ES_00044516	chr5	-	2256	6	ISM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	459	580	459	0	3prime_fragment	FALSE	canonical	3	61	junction_5	127.706851813049	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025186	121014784	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835
ES_00044519	chr5	-	1453	7	Fusion	ENSMUSG00000052776.11_ENSMUSG00000066861.15	novel	1489	7	NA	NA	-31	0	multi-exon	FALSE	canonical	3	294	junction_1	134.94618268859	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045615	121014784	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_121015091_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ES_00044522	chr5	-	1885	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTCATTGGTATCAACG	NA	False	NA	NA	False	AATAAA	-37	NA	121045584	121034318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ES_00044523	chr5	-	5599	16	FSM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	9.90263713473448	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCATTTGGTCTGTTGT	852	False	NA	0	True	AATAAA	-23	NA	121329460	121268595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282748_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
ES_00044524	chr5	-	5654	16	NNC	ENSMUSG00000043733.15	novel	5599	16	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	23.8687149959011	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCATTTGGTCTGTTGT	809	False	NA	0	True	AATAAA	-23	NA	121329503	121268595	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282759_121287164_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
ES_00044525	chr5	-	2432	12	FSM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	0	-7	0	2	multi-exon	FALSE	canonical	3	6	junction_2	10.9499235817553	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATTCTTTCTATAGAG	3630	False	NA	3	True	AATAAA	-21	NA	121523634	121509785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121510476_121510665_121510739_121511212_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ES_00044526	chr5	-	1815	8	NNC	ENSMUSG00000042726.15	novel	2503	12	NA	NA	236	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	13.2711133285641	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCTTGTGATTCTTTC	4936	False	NA	-4	True	AATAAA	-14	NA	121516650	121509792	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512125_121513078_121513310_121513858_121513936_121515800_121516008_121516558
ES_00044528	chr5	-	2062	14	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	-85	82225	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	194.034279897002	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGTAAAAAAAAATAAGAA	NA	False	NA	NA	False	NA	NA	NA	121731730	121621864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121621896_121705768_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ES_00044529	chr5	-	1523	14	FSM	ENSMUSG00000029454.16	ENSMUST00000111783.8	1513	14	0	-10	0	0	multi-exon	FALSE	canonical	0	0	junction_9	58.7492918250155	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTATATAGATTTAAGTT	NA	False	NA	4	True	AATAAA	-30	NA	121683263	121663100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121663303_121663725_121663831_121664807_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
ES_00044530	chr5	-	2234	14	FSM	ENSMUSG00000029454.16	ENSMUST00000031410.14	2234	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	50.8494703910793	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTATATAGATTTAAGTT	NA	False	NA	4	True	AATAAA	-30	NA	121683968	121663100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
ES_00044532	chr5	-	3511	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	0	356	0	-356	multi-exon	FALSE	canonical	3	476	junction_10	93.9036148872283	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCAGAATTTCCGTTT	NA	False	NA	NA	False	NA	NA	NA	121731887	121704445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ES_00044534	chr5	-	1898	11	FSM	ENSMUSG00000029455.15	ENSMUST00000129753.8	1799	11	-49	-50	-47	50	multi-exon	FALSE	canonical	3	476	junction_8	71.1047818363857	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAAGCCTTCTGCGCTCC	NA	False	NA	NA	False	NA	NA	NA	121731692	121708328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ES_00044535	chr5	-	3884	11	FSM	ENSMUSG00000042647.14	ENSMUST00000041252.13	3881	11	0	-3	0	3	multi-exon	FALSE	canonical	3	24	junction_8	9.91413132856328	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCTTGATCATGATGTT	NA	False	NA	3	True	NA	NA	NA	121757001	121734834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
ES_00044536	chr5	-	3629	21	FSM	ENSMUSG00000029456.13	ENSMUST00000111770.2	3626	21	4	-7	4	5	multi-exon	FALSE	canonical	3	24	junction_2	12.9348366823861	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGCTAGATTTTTTCT	NA	False	NA	0	True	NA	NA	NA	121798573	121759083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
ES_00044537	chr5	-	4012	8	NIC	ENSMUSG00000042594.17	novel	2530	8	NA	NA	3	-15	intron_retention	FALSE	canonical	3	8	junction_7	16.67088382021	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGTTTCCAGTATTAC	NA	False	NA	-35	True	NA	NA	NA	121975706	121953565	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121975636
ES_00044538	chr5	-	4369	9	FSM	ENSMUSG00000042594.17	ENSMUST00000086310.8	4195	9	-14	-160	-14	0	multi-exon	FALSE	canonical	2	4	junction_8	20.0187412191676	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAACCATGATCTCTGC	NA	False	NA	-20	True	ATTAAA	-13	NA	121974936	121953550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121970565_121970654_121974612
ES_00044539	chr5	-	2530	8	FSM	ENSMUSG00000042594.17	ENSMUST00000040308.14	2530	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	11.8252583351856	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCTACTAGGACCCCC	NA	False	NA	60	True	ATTAAA	-14	NA	121974913	121955278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
ES_00044542	chr5	-	1262	10	ISM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	43	9684	-2	908	5prime_fragment	FALSE	canonical	2	16	junction_4	4.34044999658325	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCTTTTGGAGGTCCGC	NA	False	NA	NA	False	NA	NA	NA	122402480	122385594	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
ES_00044544	chr5	-	1618	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	13	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGGTCATTTTATA	9989	False	NA	NA	False	AATAAA	-17	NA	122492283	122463570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
ES_00044547	chr5	-	332	1	FSM	ENSMUSG00000079906.3	ENSMUST00000116022.3	320	1	-56	44	-56	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTCTTCAAAGGACCCAG	NA	False	NA	NA	False	NA	NA	NA	122577034	122576702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122576700_122577000
ES_00044548	chr5	-	5668	21	FSM	ENSMUSG00000029467.16	ENSMUST00000179939.8	5674	21	0	6	0	-5	multi-exon	FALSE	canonical	0	0	junction_1	276.93845886767	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAGCAGAGCTGTGGCT	7328	False	NA	NA	False	AATAAA	-17	NA	122640237	122591581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122592368_122593955_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ES_00044549	chr5	-	4434	21	FSM	ENSMUSG00000029467.16	ENSMUST00000177974.8	3984	21	-447	-3	-117	2	multi-exon	FALSE	canonical	3	23	junction_1	272.291071282185	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTGTGGCTGATTTACA	7160	False	NA	NA	False	AATAAA	-25	NA	122640405	122591573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122592368_122595365_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ES_00044550	chr5	-	4486	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_17	105.58760524925	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAAAAATAACTGTC	7277	False	NA	-28	True	AATAAA	-13	NA	122640288	122594402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ES_00044551	chr5	-	2965	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	-3	-12	-3	12	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATTTTTGCTTCAGTC	1240	False	NA	NA	False	ATTAAA	-32	NA	122752584	122688254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
ES_00044552	chr5	-	880	7	FSM	ENSMUSG00000029469.15	ENSMUST00000144065.6	872	7	0	-8	0	8	multi-exon	FALSE	canonical	3	48	junction_5	10.4682058316281	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTTCCTATTGATGGA	1255	False	NA	NA	False	NA	NA	NA	122752569	122740236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
ES_00044554	chr5	-	2039	13	ISM	ENSMUSG00000029471.14	ENSMUST00000199830.5	3139	14	9	2732	-8	-2732	5prime_fragment	FALSE	canonical	3	28	junction_4	15.8190725251374	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGAATGTCACTCAGT	4642	False	NA	-22	True	AATAAA	-16	NA	122917453	122881413	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ES_00044555	chr5	-	1722	14	NIC	ENSMUSG00000029471.14	novel	3139	14	NA	NA	3	-2732	combination_of_known_junctions	FALSE	canonical	3	7	junction_12	21.8829592451625	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGAATGTCACTCAGT	4653	False	NA	-22	True	AATAAA	-16	NA	122917442	122881413	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902017_122902322_122902366_122917314
ES_00044557	chr5	-	1084	5	FSM	ENSMUSG00000029471.14	ENSMUST00000196742.2	1084	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	7.3824115301167	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGTTAGCAGTGTCTT	4707	False	NA	0	True	AATAAA	-21	NA	122917388	122894338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ES_00044559	chr5	-	2760	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	0	0	0	0	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122959402	122925521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ES_00044560	chr5	-	3376	16	FSM	ENSMUSG00000029472.14	ENSMUST00000196423.5	3376	16	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_7	355.400894140062	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959343	122925783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ES_00044561	chr5	-	2415	17	FSM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	0	-2	0	0	multi-exon	FALSE	canonical	3	46	junction_8	522.501461570922	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959343	122925783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938672_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ES_00044562	chr5	-	2417	17	FSM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	0	-4	0	0	multi-exon	FALSE	canonical	3	167	junction_3	528.705609099951	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGGTTTTTTTTTAT	NA	False	NA	-19	True	AATAAA	-20	NA	122959343	122925785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122926082_122926364_122926528_122929670_122929799_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ES_00044563	chr5	-	2412	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	0	-8	0	0	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGGTTTTTTTTTAT	NA	False	NA	-19	True	AATAAA	-20	NA	122959357	122925785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ES_00044564	chr5	-	687	4	FSM	ENSMUSG00000029472.14	ENSMUST00000199130.2	687	4	0	0	0	0	multi-exon	FALSE	canonical	3	1940	junction_1	84.9718907770224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACGCTCTTGGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	122931592	122925977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122926082_122926364_122926528_122929670_122929998_122931499
ES_00044565	chr5	-	1788	7	FSM	ENSMUSG00000029472.14	ENSMUST00000200058.5	1174	7	-262	-352	0	352	multi-exon	FALSE	canonical	3	1753	junction_2	189.823382823789	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCAGCCATGATGTGG	NA	False	NA	NA	False	NA	NA	NA	122959343	122943554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ES_00044566	chr5	-	4975	23	FSM	ENSMUSG00000029475.18	ENSMUST00000086200.11	4999	23	40	-16	40	0	multi-exon	FALSE	canonical	2	2	junction_22	156.230069803299	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGTTTGAGGGTTTC	9990	False	NA	NA	False	TATAAA	-24	NA	123126556	123008727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123070529_123071015_123072795_123072923_123079015_123079132_123085789_123085944_123087132_123087227_123099075_123099183_123099472_123099652_123120839_123120887_123122524_123122604_123125724_123125870_123126529
ES_00044568	chr5	-	3535	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	0	-3	0	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGTTTGAGGGTTTC	8594	False	NA	NA	False	TATAAA	-24	NA	123038418	123008727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
ES_00044569	chr5	-	2447	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-31	-162	combination_of_known_junctions	FALSE	canonical	3	58	junction_12	99.7441170640599	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTCAAACGCTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	123060201	123009929	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
ES_00044570	chr5	-	5180	23	FSM	ENSMUSG00000029475.18	ENSMUST00000046073.16	5180	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_20	155.859758959168	1369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGTTTGAGGGTTTC	9384	False	NA	NA	False	TATAAA	-24	NA	123127162	123008727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123070529_123071015_123072795_123072923_123079015_123079132_123085789_123085944_123087132_123087227_123099075_123099183_123099472_123099652_123120839_123120887_123122524_123122604_123125724_123125870_123126930
ES_00044574	chr5	-	264	2	Antisense	novelGene_ENSMUSG00000080836.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2632	junction_1	0	73	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGGATCCAACACTCTCT	NA	False	NA	NA	False	NA	NA	NA	123205286	123199319	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_123199532_123205234
ES_00044575	chr5	-	333	1	FSM	ENSMUSG00000094664.2	ENSMUST00000148282.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	4097	False	NA	NA	False	NA	NA	NA	123393876	123393543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123393500_123393900
ES_00044577	chr5	-	2588	4	FSM	ENSMUSG00000029433.17	ENSMUST00000145152.8	2588	4	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_1	60.8659729788875	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAGACTAAAGGTTT	8962	False	NA	NA	False	NA	NA	NA	123662199	123653865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123656129_123658103_123658236_123661317_123661445_123662133
ES_00044578	chr5	-	719	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111586.8	719	6	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	270.536208297522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAGAAAAATCTTAA	8965	False	NA	NA	False	ATTAAA	-14	NA	123662196	123654326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123654516_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ES_00044579	chr5	-	2791	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	-3	-2107	0	324	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTCTCAGAAGTTGTCC	8962	False	NA	NA	False	NA	NA	NA	123662199	123653541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ES_00044581	chr5	-	5566	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	25	-1356	25	1356	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCAAGTGTCCCTTTGA	9992	False	NA	-3	True	NA	NA	NA	123711076	123665365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
ES_00044586	chr5	-	8144	25	NIC	ENSMUSG00000049550.18	novel	6133	24	NA	NA	-36	0	intron_retention	FALSE	canonical	3	32	junction_10	10.473428680873	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGGTTGGTTTTTGG	9866	False	NA	-5	True	AATAAA	-18	NA	123822424	123715857	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ES_00044588	chr5	-	3568	3	FSM	ENSMUSG00000029427.12	ENSMUST00000199875.2	1868	3	-194	-1506	-194	1	multi-exon	FALSE	canonical	3	448	junction_2	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAAGTTCCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	123841675	123836355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123839186_123840625_123840744_123841055
ES_00044589	chr5	-	4288	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	0	-2	0	2	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTATCCAAGTTCCTTT	6397	False	NA	NA	False	AATAAA	-15	NA	123859107	123836362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
ES_00044590	chr5	-	531	4	FSM	ENSMUSG00000029427.12	ENSMUST00000200161.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.905603390146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTCTGCCCACTTTG	NA	False	NA	NA	False	AATAAA	-35	NA	123852144	123846350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123846696_123847257_123847324_123847444_123847549_123852128
ES_00044592	chr5	-	2279	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	-9	0	5	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATGCTATTTGCTTATT	4323	False	NA	NA	False	AATAAA	-20	NA	123887475	123866483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
ES_00044594	chr5	-	2126	10	NNC	ENSMUSG00000029422.16	novel	1595	10	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_3	142.495310730729	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTGTATGCTATTTGCT	4369	False	NA	NA	False	AATAAA	-16	NA	123887429	123866487	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_123867420_123868517_123868608_123869099_123869330_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ES_00044595	chr5	-	1937	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	-9	-243	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4355	False	NA	-8	True	AATAAA	-13	NA	123887443	123866786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ES_00044597	chr5	-	1595	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	4321	False	NA	NA	False	NA	NA	NA	123887477	123867069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ES_00044599	chr5	-	4223	8	FSM	ENSMUSG00000029422.16	ENSMUST00000111515.8	4223	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	206.801788173692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAACAGAACCCAAA	4323	False	NA	NA	False	NA	NA	NA	123887475	123871431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ES_00044600	chr5	-	3074	3	FSM	ENSMUSG00000029422.16	ENSMUST00000182968.8	3074	3	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_2	31.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGAGAAAAATTGAAA	223	False	NA	NA	False	NA	NA	NA	123879811	123872951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123874745_123877554_123877759_123878734
ES_00044602	chr5	-	1980	3	FSM	ENSMUSG00000029422.16	ENSMUST00000183253.8	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_2	57.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123880011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123881742_123883017_123883175_123887351
ES_00044605	chr5	-	4509	8	FSM	ENSMUSG00000029406.16	ENSMUST00000159628.8	2755	8	-150	-1604	-150	0	multi-exon	FALSE	canonical	3	20	junction_7	5.20204041600946	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCGTCTCATTACTGTG	636	False	NA	-11	True	ATTAAA	-16	NA	124262767	124256752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124259650_124259730_124259860_124259935_124260120_124260632_124260783_124260951_124261101_124261187_124261305_124261605_124261723_124262001
ES_00044614	chr5	-	715	3	FSM	ENSMUSG00000029394.12	ENSMUST00000111473.8	715	3	0	0	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	38.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCGCCTTTGCTCAGTA	8671	False	NA	NA	False	NA	NA	NA	124488317	124483806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124484218_124486663_124486791_124488140
ES_00044615	chr5	-	10182	32	FSM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	0	-21	0	15	multi-exon	FALSE	canonical	3	126	junction_29	101.260073560108	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGATTTGAAACATCTGC	NA	False	NA	64	True	AATAAA	-36	NA	124563673	124506749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
ES_00044616	chr5	-	10086	32	FSM	ENSMUSG00000038095.16	ENSMUST00000065263.12	10071	32	0	-15	0	15	multi-exon	FALSE	canonical	3	24	junction_31	128.473127279141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGATTTGAAACATCTGC	NA	False	NA	64	True	AATAAA	-36	NA	124563977	124506749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
ES_00044617	chr5	-	10346	32	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	-36	146	combination_of_known_junctions	TRUE	canonical	3	34	junction_29	112.134674493331	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGATGGGTACTTGCCTT	NA	False	NA	NA	False	TTTAAA	-34	NA	124563709	124506618	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124551247_124551353_124552461_124552591_124563509
ES_00044618	chr5	-	10032	31	Fusion	ENSMUSG00002076658.1_ENSMUSG00000038095.16	novel	4170	31	NA	NA	1	0	multi-exon	FALSE	canonical	3	85	junction_29	90.1802454347218	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGGTGTTGTGGTTTGG	NA	False	NA	49	True	AATAAA	-21	NA	124563646	124506764	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
ES_00044627	chr5	-	1396	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	0	-5	0	5	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCATGTGTATCCAACTGAA	NA	False	NA	53	True	AATAAA	-29	NA	124616429	124601322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
ES_00044628	chr5	-	2448	7	FSM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	-34	-165	-34	165	multi-exon	FALSE	canonical	3	33	junction_4	6.39661368746516	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTGGGTGGAAGGGCTT	NA	False	NA	NA	False	NA	NA	NA	124669488	124630977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580_124653700_124659313_124659465_124668737
ES_00044630	chr5	-	1574	10	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	-26	69926	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	280.289136428796	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGGAGAGAAAGAATAGTC	NA	False	NA	NA	False	NA	NA	NA	124717164	124638349	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_124638381_124708715_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
ES_00044631	chr5	-	1990	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	23	0	23	0	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGGCTATGTGAACTT	NA	False	NA	NA	False	NA	NA	NA	124717171	124708275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
ES_00044636	chr5	-	5675	27	FSM	ENSMUSG00000029478.17	ENSMUST00000125053.8	5672	27	0	-3	0	3	multi-exon	FALSE	canonical	3	66	junction_23	20.605372138031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTCTCACTGGGCAGC	8191	False	NA	5	True	AATATA	-22	NA	125119876	125094213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808
ES_00044637	chr5	-	8578	47	FSM	ENSMUSG00000029478.17	ENSMUST00000086083.11	8575	47	0	-3	0	3	multi-exon	FALSE	canonical	2	3	junction_21	29.3222110437036	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTACTCTGCTTCTCA	NA	False	NA	-4	True	AATATA	-13	NA	125256117	125094222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114337_125114441_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125256060
ES_00044638	chr5	-	8973	49	NIC	ENSMUSG00000029478.17	novel	8661	48	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	32	junction_9	22.2506144578077	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTACTCTGCTTCTCA	NA	False	NA	-4	True	AATATA	-13	NA	125256244	125094222	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103751_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ES_00044639	chr5	-	8666	48	FSM	ENSMUSG00000029478.17	ENSMUST00000111393.8	8661	48	0	-5	0	3	multi-exon	TRUE	canonical	3	6	junction_46	24.3193630042141	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTCTCACTGGGCAGC	NA	False	NA	5	True	AATATA	-22	NA	125256244	125094213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105675_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125230670_125230717_125256060
ES_00044640	chr5	-	8862	48	FSM	ENSMUSG00000029478.17	ENSMUST00000111402.9	8862	48	3	-3	3	3	multi-exon	FALSE	canonical	3	10	junction_47	24.0857830143284	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTCTCACTGGGCAGC	NA	False	NA	5	True	AATATA	-22	NA	125256275	125094213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105675_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125256060
ES_00044641	chr5	-	8799	48	FSM	ENSMUSG00000029478.17	ENSMUST00000111398.8	8808	48	0	9	0	0	multi-exon	FALSE	canonical	2	3	junction_21	25.3800091002441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGTTTCTACTCTGCTTC	NA	False	NA	-7	True	AATATA	-10	NA	125256283	125094225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105675_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ES_00044642	chr5	-	8792	48	NNC	ENSMUSG00000029478.17	novel	8862	48	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_47	26.0358599380962	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGTTTCTACTCTGCTTC	NA	False	NA	-7	True	AATATA	-10	NA	125256229	125094225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107288_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125256060
ES_00044646	chr5	-	2548	14	NNC	ENSMUSG00000037936.16	novel	2521	13	NA	NA	0	5049	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	222.921033063837	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATGAGCAAAAGCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	125418158	125349101	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125349129_125354150_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ES_00044647	chr5	-	2373	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	0	-6	0	4	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCTGTGACTGTTTTCT	NA	False	NA	3	True	AATAAA	-25	NA	125418135	125354146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ES_00044648	chr5	-	2525	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	0	-4	0	4	multi-exon	FALSE	canonical	3	188	junction_1	171.680966232913	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCTGTGACTGTTTTCT	NA	False	NA	3	True	AATAAA	-25	NA	125418158	125354146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ES_00044650	chr5	-	1485	5	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28415	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.639634933273	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGAAAGTGACCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	125466819	125434613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434656_125463032_125463279_125463506_125463963_125464646_125465329_125466760
ES_00044652	chr5	-	2618	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	0	0	0	0	multi-exon	FALSE	canonical	3	916	junction_1	0	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTTGTTGGTTGGTTC	NA	False	NA	0	True	AATAAA	-26	NA	125467078	125463028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125465329_125466760
ES_00044653	chr5	-	1435	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	458	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	-12	True	AATAAA	-14	NA	125466819	125463040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125464138_125465049_125465329_125466760
ES_00044654	chr5	-	2398	2	FSM	ENSMUSG00000008348.10	ENSMUST00000156249.2	2581	2	183	0	-5	0	multi-exon	TRUE	canonical	3	4	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	-12	True	AATAAA	-14	NA	125467083	125463040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125465329_125466973
ES_00044656	chr5	-	453	1	FSM	ENSMUSG00000105189.2	ENSMUST00000200064.2	533	1	64	16	64	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCCTGGGCCTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	126103473	126103020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_126103000_126103500
ES_00044658	chr5	-	2732	8	FSM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_6	13.4346490805814	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGCTTCCTGATGGTT	NA	False	NA	-5	True	TATAAA	-18	NA	127694480	127672727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681771_127685835_127686126_127693878
ES_00044659	chr5	-	2214	8	NIC	ENSMUSG00000029416.18	novel	2732	8	NA	NA	-78	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	43.4295112680259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGCTTCCTGATGGTT	NA	False	NA	-5	True	TATAAA	-18	NA	127710039	127672727	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681713_127685835_127686126_127709897
ES_00044661	chr5	-	218	2	Genic_Genomic	ENSMUSG00000104581.2	novel	1958	1	NA	NA	-11	12193	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTAGATTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128318414	128304252	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_128304436_128318379
ES_00044662	chr5	-	2913	11	FSM	ENSMUSG00000029428.14	ENSMUST00000031378.14	2939	11	28	-2	0	2	multi-exon	FALSE	canonical	3	41	junction_2	6.30555310817378	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGCCTCCTCATTGTA	NA	False	NA	NA	False	ATTAAA	-29	NA	129085610	129061618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129063495_129064781_129064907_129065865_129065977_129068027_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
ES_00044664	chr5	-	441	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATCTCAAGGATCGGGG	NA	False	NA	NA	False	NA	NA	NA	129205581	129205140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129205100_129205600
ES_00044666	chr5	-	1115	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8243	-2	0	2	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGTAGTTTTAAGTGAAT	NA	False	NA	0	True	ATTAAA	-24	NA	129856270	129842619	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
ES_00044667	chr5	-	1755	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	0	-22	0	22	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGCTTCTTTTTGGTAT	8757	False	NA	20	True	ATTAAA	-44	NA	129864513	129842599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
ES_00044672	chr5	-	912	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	3	0	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	1905	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2064	False	NA	-6	True	AATAAA	-15	NA	129916311	129909999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
ES_00044673	chr5	-	2703	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	221	-237	0	237	multi-exon	TRUE	canonical	3	83	junction_6	16.6092675514317	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCCCCATGCTTGACCAT	NA	False	NA	NA	False	TTTAAA	-32	NA	130031669	130017614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
ES_00044674	chr5	-	2038	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130031706	130027499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
ES_00044675	chr5	-	935	3	FSM	ENSMUSG00000025534.18	ENSMUST00000111307.2	932	3	0	-3	0	3	multi-exon	FALSE	canonical	3	14	junction_1	55.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGCTATTGTCTTGGGAC	NA	False	NA	NA	False	AATAAA	-18	NA	130031722	130028436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130028911_130029597_130029784_130031447
ES_00044677	chr5	-	1458	16	NIC	ENSMUSG00000025533.16	novel	1824	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	65	junction_3	56.1527282408334	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053186	130040344	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
ES_00044678	chr5	-	2195	16	FSM	ENSMUSG00000025533.16	ENSMUST00000160129.8	2413	16	218	0	218	0	multi-exon	FALSE	canonical	1	102	junction_3	47.1472398155207	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053642	130040344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882
ES_00044680	chr5	-	379	1	FSM	ENSMUSG00000094092.2	ENSMUST00000119542.2	483	1	312	-208	312	208	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCACTTGGGCGGTAGAG	8855	False	NA	NA	False	NA	NA	NA	130237091	130236712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130236700_130237100
ES_00044681	chr5	-	1578	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	-30	0	30	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTCCAGTTTTGTATTC	NA	False	NA	30	True	NA	NA	NA	130284371	130274541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ES_00044684	chr5	-	6283	15	NNC	ENSMUSG00000029673.20	novel	4217	14	NA	NA	-68	10940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.3470066216477	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131567594	131455230	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_131455261_131466170_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501096_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
ES_00044686	chr5	-	3624	1	FSM	ENSMUSG00000029673.20	ENSMUST00000196613.2	3624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	984	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAACAATATTATGAGAA	NA	False	NA	NA	False	TATAAA	-12	NA	132057465	132053841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_132053800_132057500
ES_00044688	chr5	-	2350	12	NNC	ENSMUSG00000061979.9	novel	2321	11	NA	NA	0	21550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.988226384969	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAATATTTTTATATGAA	NA	False	NA	NA	False	NA	NA	NA	134205613	134155342	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134155377_134176897_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
ES_00044689	chr5	-	2343	12	NNC	ENSMUSG00000061979.9	novel	2321	11	NA	NA	0	21550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.988226384969	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAATATTTTTATATGAA	NA	False	NA	NA	False	NA	NA	NA	134205613	134155342	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134155381_134176908_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
ES_00044693	chr5	-	4325	34	NNC	ENSMUSG00000060261.17	novel	4455	35	NA	NA	0	45624	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	99.772192308913	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAAAAAAGGGGGAGCCAC	661	False	NA	NA	False	NA	NA	NA	134343574	134221063	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134221094_134266687_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044694	chr5	-	4280	33	NNC	ENSMUSG00000060261.17	novel	4302	33	NA	NA	0	45624	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.789731719015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAAAAAAGGGGGAGCCAC	661	False	NA	NA	False	NA	NA	NA	134343574	134221063	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134221094_134266687_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044695	chr5	-	4455	35	FSM	ENSMUSG00000060261.17	ENSMUST00000059042.15	4455	35	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_26	118.021213857574	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTCTTTTCCTGCTGTC	621	False	NA	-3	True	AATAAA	-31	NA	134343614	134266687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134305225_134305283_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044696	chr5	-	4362	34	NIC	ENSMUSG00000060261.17	novel	4381	34	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	192	junction_8	75.7046966966276	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	661	False	NA	-11	True	AATAAA	-23	NA	134343574	134266695	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044697	chr5	-	4304	33	FSM	ENSMUSG00000060261.17	ENSMUST00000173341.9	4302	33	0	-2	0	0	multi-exon	FALSE	canonical	3	192	junction_8	74.2225788486058	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCATTCTTTTCCTGCT	661	False	NA	-6	True	AATAAA	-28	NA	134343574	134266690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044698	chr5	-	4384	34	FSM	ENSMUSG00000060261.17	ENSMUST00000111261.12	4381	34	0	-3	0	0	multi-exon	FALSE	canonical	3	228	junction_23	69.7198249746108	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTCTTTTCCTGCTGTC	635	False	NA	-3	True	AATAAA	-31	NA	134343600	134266687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044699	chr5	-	4375	34	FSM	ENSMUSG00000060261.17	ENSMUST00000082057.10	4375	34	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_25	118.819058987589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCATTCTTTTCCTGCT	635	False	NA	-6	True	AATAAA	-28	NA	134343600	134266690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134305225_134305283_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00044702	chr5	-	3466	30	FSM	ENSMUSG00000023079.15	ENSMUST00000111244.5	3461	30	0	-5	0	5	multi-exon	FALSE	canonical	3	55	junction_29	53.0244374146404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTTTTCCCCTTTGGT	NA	False	NA	NA	False	AGTAAA	-26	NA	134485110	134386504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
ES_00044703	chr5	-	3582	31	FSM	ENSMUSG00000023079.15	ENSMUST00000073161.12	3572	31	0	-10	0	5	multi-exon	FALSE	canonical	3	65	junction_9	54.133743840808	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTTTTCCCCTTTGGT	NA	False	NA	NA	False	AGTAAA	-26	NA	134485542	134386504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ES_00044704	chr5	-	3701	31	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	8	5	combination_of_known_junctions	FALSE	canonical	3	16	junction_13	64.2361009609602	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTTTTCCCCTTTGGT	NA	False	NA	NA	False	AGTAAA	-26	NA	134485562	134386504	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411540_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ES_00044705	chr5	-	3529	30	FSM	ENSMUSG00000023079.15	ENSMUST00000171794.9	3524	30	0	-5	0	5	multi-exon	FALSE	canonical	3	127	junction_8	45.8592169193566	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTTTTCCCCTTTGGT	NA	False	NA	NA	False	AGTAAA	-26	NA	134485570	134386504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ES_00044708	chr5	-	3493	30	NNC	ENSMUSG00000023079.15	novel	3524	30	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	57.8065164255761	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485542	134386509	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134386748_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ES_00044719	chr5	-	2392	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	0	-25	0	25	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGCTGTGAACCTTGGG	10021	False	NA	21	True	AATAAA	-43	NA	134668201	134648705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ES_00044720	chr5	-	2726	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACCTCTAAAGAAGAAAC	9878	False	NA	NA	False	NA	NA	NA	134668344	134648574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ES_00044723	chr5	-	3347	16	FSM	ENSMUSG00000029674.14	ENSMUST00000015137.10	3331	16	0	-16	0	16	multi-exon	FALSE	canonical	2	10	junction_14	3.46794848097065	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGCTCCAACGGAGCAA	5766	False	NA	16	True	GGGGCT	-21	NA	134717452	134684876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690646_134690713_134690956_134691017_134693038_134693171_134694060_134694148_134694683_134694868_134697767_134697935_134698043_134698150_134699171_134699379_134701524_134701635_134701865_134702005_134715497_134715595_134717194
ES_00044725	chr5	-	602	3	FSM	ENSMUSG00000085042.9	ENSMUST00000154060.2	594	3	0	-8	0	0	multi-exon	FALSE	canonical	2	3	junction_2	17	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCCGTGCCCCTGAGT	NA	False	NA	0	True	ATTAAA	-29	NA	135042008	135040967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135041405_135041547_135041643_135041938
ES_00044728	chr5	-	928	5	FSM	ENSMUSG00000005378.18	ENSMUST00000134180.8	465	5	-90	-373	-90	-1	multi-exon	FALSE	canonical	3	942	junction_2	42.1218470630147	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGGTGTCCCTGGCCCT	NA	False	NA	-4	True	ATTAAA	-13	NA	135085963	135081813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695
ES_00044729	chr5	-	1277	12	ISM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	587	0	0	0	3prime_fragment	FALSE	canonical	3	942	junction_2	58.9567708278386	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	-1	True	ATTAAA	-16	NA	135092933	135081810	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
ES_00044734	chr5	-	1562	4	FSM	ENSMUSG00000043614.14	ENSMUST00000067935.11	1544	4	-24	6	-24	-3	multi-exon	FALSE	canonical	3	21	junction_3	2.86744175568088	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGATGATGCCCCGCCTC	NA	False	NA	-8	True	NA	NA	NA	135107144	135101759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135102838_135103247_135103331_135105311_135105484_135106915
ES_00044735	chr5	-	2508	1	FSM	ENSMUSG00000049551.3	ENSMUST00000062572.3	2293	1	-41	-174	-41	174	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTGTGTGCGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	135280125	135277617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135277600_135280100
ES_00044736	chr5	-	1298	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	0	-1	0	1	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCAGTACAATTCATTGT	NA	False	NA	0	True	AATAAA	-21	NA	135378868	135320556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ES_00044737	chr5	-	1448	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	0	-1	0	1	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCAGTACAATTCATTGT	NA	False	NA	0	True	AATAAA	-21	NA	135378898	135320556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ES_00044739	chr5	-	1287	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ES_00044740	chr5	-	5580	13	FSM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	20.4224481610038	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGAGTTTGCCCTTTATT	NA	False	NA	-5	True	AATAAA	-18	NA	135423400	135404994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135407029_135407488_135407612_135409773_135411391_135411924_135412099_135412480_135412584_135412692_135412818_135412946_135413021_135413706_135413799_135415677_135415850_135417490_135417572_135420475_135420635_135421163_135421380_135422790
ES_00044741	chr5	-	8054	31	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-207	13	intron_retention	FALSE	canonical	2	76	junction_15	42.4266818562722	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGATCAGAGTGCTCTT	9403	False	NA	15	True	AATAAA	-37	NA	135518319	135435371	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ES_00044743	chr5	-	7570	32	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	0	27	at_least_one_novel_splicesite	FALSE	canonical	2	120	junction_16	38.9079599109602	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGAGGGTTGGGCTCC	9610	False	NA	29	True	GATAAA	-15	NA	135518112	135435357	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ES_00044744	chr5	-	7516	32	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	76	junction_16	43.795262003845	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCTGGTGATAAAGGGC	9610	False	NA	-1	True	AATAAA	-21	NA	135518112	135435387	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ES_00044750	chr5	-	1150	3	FSM	ENSMUSG00000029699.14	ENSMUST00000054895.4	1191	3	35	6	-21	-6	multi-exon	FALSE	canonical	0	0	junction_2	7	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCAGTCTTTTAACTGA	NA	False	NA	-14	True	AATAAA	-9	NA	135991146	135989083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135990063_135990742_135990821_135991053
ES_00044751	chr5	-	459	2	FSM	ENSMUSG00000029699.14	ENSMUST00000111150.2	459	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCTATGATAGCTCGGG	NA	False	NA	NA	False	NA	NA	NA	135991125	135989675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135990063_135991053
ES_00044752	chr5	-	2490	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	2	-19	2	19	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGGCCACCTGAGGGGG	6686	False	NA	NA	False	NA	NA	NA	136164926	136151606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
ES_00044754	chr5	-	3893	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTTGGTTAGTGTTT	NA	False	NA	-3	True	NA	NA	NA	136227817	136206980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
ES_00044755	chr5	-	2196	16	FSM	ENSMUSG00000029705.18	ENSMUST00000175998.8	2195	16	0	-1	0	1	multi-exon	FALSE	canonical	2	13	junction_13	24.8528111533127	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCTTTTATTCTGTGA	3523	False	NA	0	True	AATAAA	-19	NA	136388872	136276987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855
ES_00044757	chr5	-	3101	23	NIC	ENSMUSG00000029705.18	novel	2831	23	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	22.7204080541869	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596310	136276988	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ES_00044758	chr5	-	4890	20	FSM	ENSMUSG00000029705.18	ENSMUST00000176486.9	4890	20	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	48.1709789530626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAAGTCACATCAG	NA	False	NA	NA	False	AATAAA	-40	NA	136402202	136302923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136304321_136308283_136308549_136311721_136311911_136315614_136315918_136333576_136333634_136334302_136334469_136336612_136337449_136338600_136338703_136340348_136340415_136341496_136342169_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175
ES_00044762	chr5	-	2411	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9741	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_10	9.19565114605812	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	898	False	NA	0	True	AATAAA	-19	NA	136811641	136770612	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811455
ES_00044764	chr5	-	837	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	0	-97	0	71	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCATGGGAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	137015755	137010946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
ES_00044765	chr5	-	1189	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	19	0	19	0	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGTCAGGGTTGACTG	NA	False	NA	32	True	NA	NA	NA	137016856	137011017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
ES_00044767	chr5	-	1342	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	12	-1	12	1	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTTGGCTTTGTTGGA	NA	False	NA	2	True	AATAAA	-26	NA	137074977	137063845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
ES_00044770	chr5	-	3308	21	NIC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-12	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_16	253.647289557764	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAACTGTGTGCTGTAT	8279	False	NA	-13	True	AGTAAA	-17	NA	137305914	137293977	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_137294169_137294248_137294376_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137299579_137299910_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ES_00044771	chr5	-	2993	20	FSM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	0	-5	0	-2	multi-exon	FALSE	non_canonical	0	0	junction_3	194.772841622735	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTATGTCCCTTCCC	8265	False	NA	-3	True	AGTAAA	-27	NA	137305928	137293967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ES_00044772	chr5	-	2981	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	0	-9	0	-2	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTATGTCCCTTCCC	8265	False	NA	-3	True	AGTAAA	-27	NA	137305928	137293967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ES_00044777	chr5	-	2088	9	FSM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	0	80	0	-80	multi-exon	FALSE	canonical	3	95	junction_6	14.9248115565993	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAACTCTCATCCTGTAC	1527	False	NA	NA	False	NA	NA	NA	137312666	137307995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137311971_137312221
ES_00044780	chr5	-	1086	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	-82	-16	11	16	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTCCTAGTGTAATT	1650	False	NA	-16	True	AATAAA	-36	NA	137500769	137499683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137499700_137500800
ES_00044781	chr5	-	803	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	95	-17	2	16	multi-exon	FALSE	canonical	3	320	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTCCTAGTGTAATT	1734	False	NA	-16	True	AATAAA	-36	NA	137500685	137499683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137500342_137500540
ES_00044786	chr5	-	1143	6	NNC	ENSMUSG00000037221.14	novel	1318	5	NA	NA	0	11	at_least_one_novel_splicesite	TRUE	non_canonical	3	75	junction_1	71.8147617137312	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTATCGCAAACTTC	9968	False	NA	1	True	ATTAAA	-32	NA	137598970	137594895	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_137594987_137595172_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
ES_00044787	chr5	-	1468	6	FSM	ENSMUSG00000037221.14	ENSMUST00000037620.14	1456	6	0	-12	0	12	multi-exon	FALSE	canonical	3	33	junction_5	88.3841614770429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATCGCAAACTTCT	9632	False	NA	2	True	ATTAAA	-33	NA	137599306	137594894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
ES_00044788	chr5	-	1225	6	NIC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-7	11	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	93.9255023941847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTATCGCAAACTTC	9625	False	NA	1	True	ATTAAA	-32	NA	137599313	137594895	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599252
ES_00044789	chr5	-	1431	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-12	11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	111.835320399634	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTATCGCAAACTTC	9606	False	NA	1	True	ATTAAA	-32	NA	137599332	137594895	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_137595004_137595065_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
ES_00044791	chr5	-	1624	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	0	2	0	0	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	4023	False	NA	-4	True	AATAAA	-19	NA	137609749	137603366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
ES_00044794	chr5	-	2923	13	FSM	ENSMUSG00000029722.16	ENSMUST00000100544.11	2858	13	-44	-21	2	-1	multi-exon	FALSE	canonical	3	27	junction_7	43.0686628794327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTGAGTGTCTTGTTTT	1766	False	NA	NA	False	NA	NA	NA	137682986	137648725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137658423_137658457_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ES_00044795	chr5	-	2893	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGAGTGTCTTGTTTTG	1764	False	NA	NA	False	NA	NA	NA	137682988	137648724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ES_00044798	chr5	-	2499	6	FSM	ENSMUSG00000045348.17	ENSMUST00000212152.2	2499	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.8	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATACAGGGGCGGCTGGG	3629	False	NA	NA	False	NA	NA	NA	137737980	137729943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137730196_137731312_137731423_137731977_137732185_137733101_137734617_137736070_137736418_137737912
ES_00044799	chr5	-	3128	4	FSM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	12.2474487139159	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTCCAGCACTTTCTA	2726	False	NA	-6	True	AATAAA	-29	NA	137784925	137780167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137782722
ES_00044803	chr5	-	487	4	FSM	ENSMUSG00000037007.18	ENSMUST00000132318.2	488	4	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_1	8.05536398239638	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTGGAAGGCAGTTATG	1751	False	NA	NA	False	AATAAA	-33	NA	138153966	138149189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138149385_138149466_138149559_138151106_138151232_138153891
ES_00044804	chr5	-	986	2	FSM	ENSMUSG00000029730.17	ENSMUST00000125316.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	3	2180	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	8422	False	NA	-25	True	AATAAA	-15	NA	138163978	138162861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138163183_138163313
ES_00044805	chr5	-	2967	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	0	-5	0	5	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTTTTAGTATGCTCTC	1716	False	NA	-3	True	AATAAA	-37	NA	138170684	138162839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ES_00044806	chr5	-	2377	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_14	167.30713843536	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1986	False	NA	-4	True	AATAAA	-18	NA	138185454	138176878	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185324
ES_00044808	chr5	-	2379	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTCCCGCATCACATA	1965	False	NA	-2	True	AATAAA	-20	NA	138185475	138176876	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
ES_00044810	chr5	-	2308	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	183.295568157341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	9932	False	NA	-4	True	AATAAA	-18	NA	138185713	138176878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
ES_00044816	chr5	-	2586	10	FSM	ENSMUSG00000029510.16	ENSMUST00000161827.8	2586	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	3.67507453523138	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTCTCTGTGTGTGTA	1721	False	NA	0	True	AATAAA	-20	NA	138278267	138271916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
ES_00044818	chr5	-	4741	6	FSM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	6	2	3	-2	multi-exon	FALSE	canonical	3	54	junction_4	14.2632394637403	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCATTTTAATTTC	1737	False	NA	NA	False	ATTAAA	-14	NA	138618017	138601915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316_138615430_138617870
ES_00044819	chr5	-	3628	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	18	-328	0	328	multi-exon	FALSE	canonical	3	23	junction_3	27.3530162870569	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGTTAAATTGGAAGTAA	1752	False	NA	NA	False	ATTAAA	-37	NA	138618002	138602917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
ES_00044820	chr5	-	2254	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1752	False	NA	-9	True	AATAAA	-10	NA	138618002	138604381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
ES_00044821	chr5	-	2076	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	0	-16	0	16	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCTGTTTGTCTGGTT	NA	False	NA	-3	True	NA	NA	NA	138980792	138961752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
ES_00044822	chr5	-	1543	7	FSM	ENSMUSG00000025856.16	ENSMUST00000046901.14	1543	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	166.22140522675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCTTGGATGACATTT	NA	False	NA	NA	False	NA	NA	NA	138980708	138962270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138962983_138964376_138964446_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
ES_00044823	chr5	-	2227	7	FSM	ENSMUSG00000025856.16	ENSMUST00000110897.8	1287	7	0	-940	0	12	multi-exon	FALSE	canonical	3	66	junction_6	122.688969892706	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCGTGGTTCTGTTTGTCT	NA	False	NA	-7	True	ACTAAA	-44	NA	138981842	138961756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463_138980594_138981488
ES_00044826	chr5	-	2450	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	10	1	10	-1	multi-exon	FALSE	canonical	3	183	junction_2	1.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGCGTTGAGTAGTGT	NA	False	NA	NA	False	TATAAA	-18	NA	139330978	139321944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139324131_139328317_139328430_139330826
ES_00044827	chr5	-	1429	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446257	139345493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
ES_00044828	chr5	-	2030	4	FSM	ENSMUSG00000053553.12	ENSMUST00000198474.2	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	29.698484809835	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446282	139345493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139347144_139349727_139349919_139441171_139441302_139446223
ES_00044829	chr5	-	3174	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	-1	-4	-1	4	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGACAGTTTCTCTAAATA	8676	False	NA	-2	True	AATAAA	-28	NA	139470305	139456961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
ES_00044830	chr5	-	3130	7	FSM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	0	-9	0	4	multi-exon	FALSE	canonical	3	34	junction_6	12.5532200384337	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGACAGTTTCTCTAAATA	8709	False	NA	-2	True	AATAAA	-28	NA	139470272	139456961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
ES_00044831	chr5	-	2963	8	NNC	ENSMUSG00000053581.14	novel	3121	7	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.933800026892	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATTTTTTATTCTAGACA	8811	False	NA	-15	True	AATAAA	-15	NA	139470170	139456974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_139458828_139458879_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
ES_00044832	chr5	-	3350	17	FSM	ENSMUSG00000036718.18	ENSMUST00000044642.14	3346	17	0	-4	0	4	multi-exon	FALSE	canonical	1	5	junction_8	4.83476990145343	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTGTGTGTGTCACCG	NA	False	NA	0	True	AATAAA	-19	NA	139722091	139692446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139692665_139692816_139692864_139694640_139694756_139695270_139695345_139695445_139695537_139695957_139696082_139696156_139696222_139696337_139696488_139697308_139697467_139698041_139698136_139698895_139699153_139701460_139702601_139703193_139703310_139703977_139704169_139704998_139705141_139707702_139707752_139721772
ES_00044833	chr5	-	1612	7	FSM	ENSMUSG00000029547.11	ENSMUST00000198615.2	1634	7	25	-3	25	0	multi-exon	FALSE	canonical	3	140	junction_5	51.2076383191241	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTGTCCTGTGTTGT	NA	False	NA	-9	True	AATGAA	-19	NA	139740588	139737036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828
ES_00044834	chr5	-	7089	47	NNC	ENSMUSG00000029547.11	novel	7102	47	NA	NA	17	0	intron_retention	FALSE	canonical	3	66	junction_11	45.0548709782392	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTGTCCTGTGTTGT	NA	False	NA	-9	True	AATGAA	-19	NA	139761411	139737036	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742194_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757479_139757570_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
ES_00044835	chr5	-	7106	47	FSM	ENSMUSG00000029547.11	ENSMUST00000072607.9	7102	47	0	-4	0	4	multi-exon	TRUE	canonical	0	0	junction_11	49.3038493955329	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTCCTGTGTTGTCCCT	NA	False	NA	-5	True	AATGAA	-23	NA	139761428	139737032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757479_139757570_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
ES_00044837	chr5	-	694	5	FSM	ENSMUSG00000029547.11	ENSMUST00000197156.2	694	5	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_3	11.7765657133139	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCATGATGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	139757486	139755128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291
ES_00044838	chr5	-	621	4	FSM	ENSMUSG00000029547.11	ENSMUST00000196864.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	62.0340408342244	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAGAGGGTGTCATCGAG	NA	False	NA	NA	False	NA	NA	NA	139761429	139758372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139758550_139760042_139760334_139761086_139761186_139761375
ES_00044839	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_2	27	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7313	False	NA	-12	True	AATAAA	-31	NA	139812640	139809346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139809829_139811882_139812120_139812476
ES_00044840	chr5	-	754	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	-21	0	0	multi-exon	FALSE	canonical	3	69	junction_2	75.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7355	False	NA	-12	True	AATAAA	-31	NA	139812598	139809346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139809829_139811882_139812120_139812563
ES_00044841	chr5	-	2645	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	-5	0	5	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGGCTCCAAGCTACCT	NA	False	NA	6	True	AATAAA	-32	NA	140307307	139994438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
ES_00044842	chr5	-	2637	18	NNC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_17	43.2672550934514	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307307	139994443	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300905_140307261
ES_00044844	chr5	-	1438	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	-3	8	-3	-8	multi-exon	FALSE	canonical	3	45	junction_2	12	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTTTGTTTACTT	3898	False	NA	-13	True	AAAACA	-29	NA	140317656	140313436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140314536_140316734_140317025_140317607
ES_00044846	chr5	-	2635	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	-8	0	4	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCACGCTGCAGTTTCTCT	7720	False	NA	-4	True	AATAAA	-22	NA	140375017	140326049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ES_00044847	chr5	-	238	2	Intergenic	novelGene_3337	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTTTTACTTTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	140403248	140386800	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_140387028_140403237
ES_00044848	chr5	-	4660	14	FSM	ENSMUSG00000036565.8	ENSMUST00000042661.8	4658	14	0	-2	0	2	multi-exon	FALSE	canonical	3	60	junction_1	9.95255014746823	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTCTCTC	1276	False	NA	NA	False	AATAAA	-18	NA	140634786	140606330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140609287_140612205_140612282_140612876_140613051_140615136_140615274_140615469_140615563_140617247_140617341_140617942_140617999_140619019_140619096_140619318_140619392_140620513_140620610_140620936_140621158_140621268_140621381_140621651_140621822_140634459
ES_00044850	chr5	-	2809	10	FSM	ENSMUSG00000036555.15	ENSMUST00000149674.8	2983	10	0	174	0	-174	multi-exon	FALSE	canonical	3	10	junction_6	8.3813431847316	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGCCATTCAGGAAAC	4513	False	NA	NA	False	NA	NA	NA	140688031	140669738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ES_00044851	chr5	-	3418	4	FSM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	0	-2	0	2	multi-exon	FALSE	canonical	3	201	junction_1	26.9938264547038	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCATGCCTAGCATGT	NA	False	NA	NA	False	AATAAA	-29	NA	140816186	140744160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140746874_140748344_140748396_140771151_140771368_140815748
ES_00044859	chr5	-	9342	25	FSM	ENSMUSG00000039477.17	ENSMUST00000152247.8	9342	25	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	67.4743649881609	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAAAAGGAAA	1875	False	NA	NA	False	NA	NA	NA	142774278	142710415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142711943_142712732_142712808_142713595_142713833_142716949_142718305_142718618_142718787_142719304_142719422_142722397_142722507_142722629_142722706_142723392_142723511_142725167_142725310_142725869_142726020_142729157_142729586_142736134_142736390_142741135_142741415_142745465_142745827_142748744_142748917_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888
ES_00044860	chr5	-	600	3	FSM	ENSMUSG00000039477.17	ENSMUST00000198932.5	600	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	12	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGCCAGAGTCCACAGGG	NA	False	NA	NA	False	NA	NA	NA	142722436	142717860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142718305_142719304_142719422_142722397
ES_00044862	chr5	-	6487	16	FSM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	42.8710728684143	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGCCTCGTTTCTCTT	NA	False	NA	NA	False	ATTAAA	-26	NA	142803417	142740543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759801_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142800769_142801201_142803026
ES_00044863	chr5	-	6669	17	NNC	ENSMUSG00000039477.17	novel	6487	16	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_15	45.1725857130185	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTGCCTCGTTTCTCT	NA	False	NA	NA	False	ATTAAA	-25	NA	142803441	142740544	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142778759_142778916_142800769_142801201_142803026
ES_00044864	chr5	-	5183	13	NNC	ENSMUSG00000039477.17	novel	6487	16	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	44.7017119980382	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGTGTGCCTCGTTTCT	1881	False	NA	NA	False	ATTAAA	-23	NA	142774272	142740546	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142741415_142745579_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888
ES_00044868	chr5	-	1947	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	43253	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTCCAGAATATCCCGG	8889	False	NA	NA	False	NA	NA	NA	142892509	142845616	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142845646_142888871_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ES_00044869	chr5	-	1946	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	43253	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTCCAGAATATCCCGG	8889	False	NA	NA	False	NA	NA	NA	142892509	142845616	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142845645_142888871_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ES_00044870	chr5	-	1943	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	43253	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTCCAGAATATCCCGG	8889	False	NA	NA	False	NA	NA	NA	142892509	142845616	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142845646_142888875_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ES_00044872	chr5	-	1877	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	2717	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAAATTAATTTT	8949	False	NA	NA	False	NA	NA	NA	142892449	142886152	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142886180_142888879_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ES_00044873	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8889	False	NA	-1	True	AATAAA	-27	NA	142892509	142888869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ES_00044874	chr5	-	930	3	FSM	ENSMUSG00000029580.15	ENSMUST00000171419.8	930	3	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_1	22	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGGGTAAGTTGTAGCC	9822	False	NA	NA	False	NA	NA	NA	142891576	142890105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142890538_142890991_142891232_142891318
ES_00044875	chr5	-	536	4	FSM	ENSMUSG00000029580.15	ENSMUST00000106216.3	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	1903.14482429011	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACAGGCATTGTGATGGA	9706	False	NA	NA	False	NA	NA	NA	142891692	142890459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142890538_142890991_142891232_142891318_142891448_142891603
ES_00044876	chr5	-	4631	17	FSM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	0	-927	0	0	multi-exon	FALSE	canonical	3	116	junction_14	28.9242005075335	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	6144	False	NA	-1	True	AATAAA	-16	NA	143098735	142976647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
ES_00044880	chr5	-	588	2	FSM	ENSMUSG00000104529.5	ENSMUST00000200314.5	588	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3525	False	NA	0	True	AATAAA	-19	NA	143151458	143150533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143150848_143151184
ES_00044881	chr5	-	520	3	FSM	ENSMUSG00000104529.5	ENSMUST00000198334.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	7.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3477	False	NA	0	True	AATAAA	-19	NA	143151506	143150533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143150848_143151184_143151305_143151420
ES_00044882	chr5	-	3380	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	-44	-1	1	1	multi-exon	FALSE	canonical	3	25	junction_4	6.20483682299543	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTTATGTGTTGTGTT	NA	False	NA	NA	False	GATAAA	-4	NA	143166529	143157939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
ES_00044888	chr5	-	1359	8	FSM	ENSMUSG00000001844.11	ENSMUST00000159813.8	1341	8	0	-18	0	17	multi-exon	TRUE	canonical	3	40	junction_2	78.3753397284568	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCTGTGTTGGTTTCTGC	5305	False	NA	4	True	AATACA	-43	NA	143314975	143302226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ES_00044889	chr5	-	1487	9	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	111.939087788851	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGGATATTTGTTTTCT	5302	False	NA	-21	True	AATACA	-18	NA	143314978	143302251	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314432_143314653_143314920
ES_00044891	chr5	-	1403	8	NIC	ENSMUSG00000001844.11	novel	1341	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	100.312165823717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGGATATTTGTTTTC	5323	False	NA	-22	True	AATACA	-17	NA	143314957	143302252	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ES_00044892	chr5	-	1383	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	91.0541440180355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGGATATTTGTTTTC	5323	False	NA	-22	True	AATACA	-17	NA	143314957	143302252	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143312061_143314145_143314326_143314920
ES_00044901	chr5	-	5375	18	FSM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	-224	0	-224	0	multi-exon	FALSE	canonical	3	67	junction_4	13.3323240679149	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTCTCAGTTTTACTC	NA	False	NA	NA	False	ATTAAA	-1	NA	143718259	143696079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143697098_143697704_143697744_143699290_143699593_143700356_143701836_143702331_143702427_143702528_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
ES_00044902	chr5	-	2554	3	FSM	ENSMUSG00000051306.8	ENSMUST00000141396.2	2554	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAAAAGGCATTC	NA	False	NA	NA	False	AAAAAG	-1	NA	143702942	143699522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143699593_143700356_143702427_143702528
ES_00044903	chr5	-	1339	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	-154	0	154	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	1009	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGACTATACAGAATAAAGG	NA	False	NA	NA	False	GGGGCT	-23	NA	143846657	143839367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
ES_00044909	chr5	-	3138	5	ISM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	23812	7	-17	-7	intron_retention	FALSE	canonical	3	81	junction_4	6.01560470775798	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGCGTGACTGACAAGAT	NA	False	NA	-13	True	AATAAA	-10	NA	144136621	144131266	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372
ES_00044911	chr5	-	3247	14	FSM	ENSMUSG00000038859.8	ENSMUST00000055190.8	3247	14	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_13	4.28979799803037	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTGTAAGTGGTACC	NA	False	NA	-1	True	AATAAA	-17	NA	144294922	144201335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_144202843_144203417_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253_144221407_144222267_144222406_144222884_144222957_144223059_144223122_144255738_144255826_144261366_144261443_144294600
ES_00044913	chr5	-	2794	8	FSM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	11	0	11	0	multi-exon	TRUE	canonical	2	3	junction_7	5.20204041600946	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTGGCAAGAATATC	NA	False	NA	-15	True	AATAAA	-17	NA	144698448	144672724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097_144689258_144692020_144692327_144698266
ES_00044915	chr5	-	5276	17	NNC	ENSMUSG00000038780.15	novel	5343	18	NA	NA	-53	25	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_11	85.1612211851732	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTTTTCTTTGCGTA	NA	False	NA	18	True	AATAAA	-45	NA	144902710	144813279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144831283_144831369_144833299_144833537_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ES_00044916	chr5	-	2725	18	FSM	ENSMUSG00000038780.15	ENSMUST00000100461.7	2725	18	0	0	0	0	multi-exon	TRUE	canonical	3	98	junction_2	50.6104602342352	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCAGCCTCCTTGGCAC	NA	False	NA	-39	True	AATAAA	-16	NA	144902657	144815920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_144816267_144817434_144817511_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ES_00044919	chr5	-	3087	9	FSM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	16.4350045634311	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145103918	145084323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870_145102344_145103763
ES_00044921	chr5	-	607	5	FSM	ENSMUSG00000038690.16	ENSMUST00000162360.8	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	2943.81371480941	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9969	False	NA	-10	True	AATAAA	-17	NA	145128402	145120515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125133_145128312
ES_00044923	chr5	-	1958	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	-5	14	-5	-14	multi-exon	FALSE	canonical	3	18	junction_2	1	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTTGTGATTGTTCAG	1586	False	NA	NA	False	NA	NA	NA	145138683	145131769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_145133010_145135486_145135611_145138089
ES_00044924	chr5	-	3264	5	FSM	ENSMUSG00000029634.16	ENSMUST00000169407.9	3276	5	15	-3	15	-1	multi-exon	FALSE	canonical	1	2	junction_4	52.1488254901297	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGTGCAAACTTATTT	2850	False	NA	NA	False	ATTAAA	-27	NA	146157696	146146002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157547
ES_00044926	chr5	-	4327	9	FSM	ENSMUSG00000029640.18	ENSMUST00000085614.6	4327	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	37.7638633484446	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATACTTTTTTTTCCTTTT	1122	False	NA	NA	False	NA	NA	NA	146731816	146671618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_146674591_146675909_146675989_146677103_146677302_146688504_146688589_146688702_146688780_146691179_146691410_146700010_146700225_146705746_146705828_146731424
ES_00044928	chr5	-	2131	5	FSM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	53.5863788662753	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGTGCATTTGTGCTA	NA	False	NA	2	True	NA	NA	NA	146900597	146891329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900532
ES_00044930	chr5	-	1134	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900607	146892176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
ES_00044931	chr5	-	4551	10	FSM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	0	6	0	-6	multi-exon	FALSE	canonical	3	45	junction_1	11.6724853214835	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGAGCCCGCCTCATGTT	4960	False	NA	NA	False	NA	NA	NA	147013396	146953470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896_146966266_146969684_146969885_146970088_146970331_146978840_146979309_147013227
ES_00044933	chr5	-	1313	5	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_2	4.55521678957215	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTAGTATACTCTTTCT	8555	False	NA	0	True	NA	NA	NA	147949178	147941083	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_147941718_147942673_147942827_147943327_147943469_147943860_147944081_147949013
ES_00044934	chr5	-	1479	1	FSM	ENSMUSG00000066554.7	ENSMUST00000150411.2	1479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTCCTGAAGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	148121187	148119708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148119700_148121200
ES_00044936	chr5	-	335	1	FSM	ENSMUSG00000041313.15	ENSMUST00000201348.2	2232	1	1895	2	1062	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGGAAAAAAAAAAAAAAC	1552	False	NA	NA	False	GATAAA	-38	NA	148328563	148328228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148328200_148328600
ES_00044937	chr5	-	2537	5	FSM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_2	34.1641259217911	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTTGTTGATGATTT	NA	False	NA	-4	True	AATAAA	-21	NA	148489472	148441444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762
ES_00044938	chr5	-	2064	6	FSM	ENSMUSG00000001687.16	ENSMUST00000201595.4	2064	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	118.120954957196	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATATTTTTTTTTCACT	NA	False	NA	NA	False	AAAAAG	-2	NA	148489599	148441938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148488861_148488966
ES_00044939	chr5	-	6071	11	FSM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	86	0	67	0	multi-exon	FALSE	canonical	0	0	junction_7	3.86781592116274	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGAGATCTTTTCTGC	2529	False	NA	NA	False	AATAAA	-16	NA	148865371	148808393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865335
ES_00044940	chr5	-	643	4	FSM	ENSMUSG00000041298.16	ENSMUST00000149169.3	767	4	124	0	124	0	multi-exon	FALSE	canonical	2	4	junction_3	3.68178700572909	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAGCAAGAGGGAGAGAT	2586	False	NA	NA	False	NA	NA	NA	148865314	148841402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148841540_148855405_148855567_148858046_148858223_148865145
ES_00044941	chr5	-	404	1	FSM	ENSMUSG00000108207.3	ENSMUST00000203736.2	1854	1	385	1065	385	-1065	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCGCCCCTCCCCATTCC	NA	False	NA	NA	False	NA	NA	NA	148892922	148892518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148892500_148892900
ES_00044944	chr5	-	2838	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGTCTTTGTAACTTT	6764	False	NA	NA	False	TTTAAA	-18	NA	148989850	148983511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ES_00044947	chr5	-	2074	1	FSM	ENSMUSG00000024437.7	ENSMUST00000025307.7	771	1	17	-1320	17	989	mono-exon	FALSE	NA	NA	NA	NA	NA	348	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGTTCTTTATTTCCA	NA	False	NA	NA	False	AATAAA	-8	NA	149093002	149090928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_149090900_149093000
ES_00044948	chr5	-	3481	19	NNC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	0	13168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	326.78301027206	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAAAGCCGGGCATGG	NA	False	NA	NA	False	NA	NA	NA	149559755	149524583	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_149524613_149540310_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ES_00044949	chr5	-	3802	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGTTCTTTTGTTGTC	NA	False	NA	11	True	TTTAAA	-13	NA	149559803	149540008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ES_00044954	chr5	-	1372	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	0	-1	0	1	multi-exon	FALSE	canonical	3	10	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTCTTGTCTTTCAAG	4560	False	NA	NA	False	AATAAA	-18	NA	150517993	150515215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_150516025_150516604_150516903_150517728
ES_00044955	chr5	-	8993	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	7	-18	7	18	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTAAGAGTAGTTTGTGG	5444	False	NA	NA	False	AATAAA	-33	NA	150589070	150559418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
ES_00044957	chr5	-	2733	6	FSM	ENSMUSG00000033970.16	ENSMUST00000145106.8	2726	6	0	-7	0	2	multi-exon	FALSE	canonical	3	318	junction_1	17.4539393834171	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTTTGTGTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	151574667	151566281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
ES_00044958	chr5	-	1256	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	0	61	0	2	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTTTGTGTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	151574707	151566281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
ES_00044959	chr5	+	2536	1	Intergenic	novelGene_3059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGCTCCTCACTGCTG	NA	False	NA	NA	False	NA	NA	NA	3304088	3306624	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_3304100_3306600
ES_00044960	chr5	+	220	1	Intergenic	novelGene_3060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACACCAAACTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	3367536	3367756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_3367500_3367800
ES_00044961	chr5	+	303	1	Intergenic	novelGene_3061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTCATTTTTTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	5752441	5752744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_5752400_5752700
ES_00044962	chr5	+	1328	1	Intergenic	novelGene_3062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGTGCAAACTGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	7481136	7482464	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_7481100_7482500
ES_00044963	chr5	+	1010	1	Intergenic	novelGene_3064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCGGCCGATGATGAGAAA	NA	False	NA	NA	False	NA	NA	NA	7483033	7484043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_7483000_7484000
ES_00044964	chr5	+	490	1	Intergenic	novelGene_3065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTGACCCGTCCAGCA	NA	False	NA	NA	False	NA	NA	NA	7484817	7485307	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_7484800_7485300
ES_00044965	chr5	+	219	1	Intergenic	novelGene_3066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAATGTTAGAGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	9214814	9215033	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_9214800_9215000
ES_00044966	chr5	+	216	1	Intergenic	novelGene_3069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGAGAAACTCTTGAG	368	False	NA	NA	False	NA	NA	NA	16297190	16297406	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_16297200_16297400
ES_00044967	chr5	+	207	1	Intergenic	novelGene_3071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACGTTATTTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	20834888	20835095	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_20834900_20835100
ES_00044968	chr5	+	255	1	Intergenic	novelGene_3072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAATTCTTGAAGAACACT	NA	False	NA	NA	False	NA	NA	NA	20861468	20861723	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_20861500_20861700
ES_00044969	chr5	+	203	1	Intergenic	novelGene_3074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTTTCCTTAATAAGT	NA	False	NA	NA	False	NA	NA	NA	21111448	21111651	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_21111400_21111700
ES_00044970	chr5	+	289	1	Intergenic	novelGene_3075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAAGACAGCTACAGT	3200	False	NA	NA	False	NA	NA	NA	21189582	21189871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_21189600_21189900
ES_00044971	chr5	+	437	1	Intergenic	novelGene_3080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCTTTGACATTCATA	NA	False	NA	NA	False	NA	NA	NA	23571248	23571685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23571200_23571700
ES_00044972	chr5	+	932	1	Intergenic	novelGene_3081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCACTGAGGCCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	23571888	23572820	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23571900_23572800
ES_00044973	chr5	+	231	1	Intergenic	novelGene_3085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAATTACCAAATTATC	NA	False	NA	NA	False	NA	NA	NA	23574028	23574259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23574000_23574300
ES_00044974	chr5	+	761	1	Intergenic	novelGene_3086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCATTCTTTATAGTCC	NA	False	NA	NA	False	NA	NA	NA	23574513	23575274	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23574500_23575300
ES_00044975	chr5	+	233	1	Intergenic	novelGene_3087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTATCAAACTTTTAAACT	NA	False	NA	NA	False	NA	NA	NA	23655678	23655911	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23655700_23655900
ES_00044976	chr5	+	204	1	Intergenic	novelGene_3088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATACTTCTCTGAGTGTTT	7021	False	NA	NA	False	AAGAAA	-3	NA	24263783	24263987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_24263800_24264000
ES_00044977	chr5	+	250	1	Intergenic	novelGene_3091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAAACAAATCT	NA	False	NA	NA	False	NA	NA	NA	25800708	25800958	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_25800700_25801000
ES_00044978	chr5	+	207	1	Intergenic	novelGene_3093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAAAAGTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	26997003	26997210	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_26997000_26997200
ES_00044980	chr5	+	288	1	Intergenic	novelGene_3094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGTTCCAGGACAGCCA	NA	False	NA	NA	False	NA	NA	NA	29902746	29903034	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_29902700_29903000
ES_00044981	chr5	+	240	1	Intergenic	novelGene_3095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTTCTTTTTTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	29918225	29918465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_29918200_29918500
ES_00044982	chr5	+	266	1	Intergenic	novelGene_3096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATCTTATTTAACAGTC	NA	False	NA	NA	False	NA	NA	NA	29933444	29933710	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_29933400_29933700
ES_00044983	chr5	+	313	1	Intergenic	novelGene_3099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATCAAGAGTTTTGACC	NA	False	NA	NA	False	NA	NA	NA	30245880	30246193	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_30245900_30246200
ES_00044984	chr5	+	203	1	Intergenic	novelGene_3101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGACAACTCTTATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	30663520	30663723	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_30663500_30663700
ES_00044986	chr5	+	227	1	Intergenic	novelGene_3104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTGGTCTTTGACAGCA	1059	False	NA	NA	False	NA	NA	NA	31528167	31528394	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_31528200_31528400
ES_00044989	chr5	+	212	1	Intergenic	novelGene_3112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	364	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTCTTAAACTTCTAAAGA	841	False	NA	NA	False	NA	NA	NA	34821985	34822197	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_34822000_34822200
ES_00044990	chr5	+	206	1	Intergenic	novelGene_3114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCAAGAATGAGACACGAG	NA	False	NA	NA	False	AAAAAG	-4	NA	37622524	37622730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_37622500_37622700
ES_00044991	chr5	+	206	1	Intergenic	novelGene_3115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTTTCTTATCTCCTT	3986	False	NA	NA	False	NA	NA	NA	37987700	37987906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_37987700_37987900
ES_00044992	chr5	+	211	1	Intergenic	novelGene_3116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTACCAAACTTTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	38882158	38882369	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_38882200_38882400
ES_00044994	chr5	+	211	1	Intergenic	novelGene_3120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTTAAATTCTTAAATA	NA	False	NA	NA	False	NA	NA	NA	45485152	45485363	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_45485200_45485400
ES_00044995	chr5	+	216	1	Intergenic	novelGene_3121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTTTCTTACTGATAA	NA	False	NA	NA	False	NA	NA	NA	50610521	50610737	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_50610500_50610700
ES_00044996	chr5	+	225	1	Intergenic	novelGene_3122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	332	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTTATAGCAAGGAGTCA	2681	False	NA	NA	False	NA	NA	NA	53066600	53066825	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_53066600_53066800
ES_00044997	chr5	+	313	1	Intergenic	novelGene_3124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATTTTACCAATGCATAA	NA	False	NA	NA	False	NA	NA	NA	60107892	60108205	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_60107900_60108200
ES_00044999	chr5	+	361	1	Intergenic	novelGene_3125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	64170876	64171237	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_64170900_64171200
ES_00045000	chr5	+	306	1	Intergenic	novelGene_3128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTGTTAAGAACACAG	NA	False	NA	NA	False	NA	NA	NA	65709420	65709726	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_65709400_65709700
ES_00045001	chr5	+	277	1	Intergenic	novelGene_3133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCTAGGCACTTAACAAA	NA	False	NA	NA	False	NA	NA	NA	67591563	67591840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_67591600_67591800
ES_00045002	chr5	+	220	1	Intergenic	novelGene_3135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATAGTTCAAAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	69619688	69619908	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_69619700_69619900
ES_00045003	chr5	+	251	1	Intergenic	novelGene_3136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTATTTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	71576748	71576999	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_71576700_71577000
ES_00045004	chr5	+	207	1	Intergenic	novelGene_3137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTCTTTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	73066987	73067194	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_73067000_73067200
ES_00045005	chr5	+	207	1	Intergenic	novelGene_3138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATAGAAAAAAATTAAAGT	NA	False	NA	NA	False	NA	NA	NA	73424376	73424583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_73424400_73424600
ES_00045006	chr5	+	232	1	Intergenic	novelGene_3139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	366	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTCTTTTCAAGTAGTC	4717	False	NA	NA	False	NA	NA	NA	73637052	73637284	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_73637100_73637300
ES_00045007	chr5	+	201	1	Intergenic	novelGene_3140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAGATTTTAATGACA	NA	False	NA	NA	False	NA	NA	NA	75268318	75268519	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_75268300_75268500
ES_00045008	chr5	+	338	1	Intergenic	novelGene_3141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGAGTTCTAGGACAGC	NA	False	NA	NA	False	NA	NA	NA	75298006	75298344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_75298000_75298300
ES_00045009	chr5	+	310	1	Intergenic	novelGene_3143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGTGCCCAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	76220552	76220862	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_76220600_76220900
ES_00045010	chr5	+	236	1	Intergenic	novelGene_3147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTATTCTTGTGAGAG	4005	False	NA	NA	False	NA	NA	NA	77289679	77289915	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_77289700_77289900
ES_00045011	chr5	+	426	1	Intergenic	novelGene_3150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAACAGTCAGTCCCCTT	NA	False	NA	NA	False	NA	NA	NA	79785903	79786329	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_79785900_79786300
ES_00045012	chr5	+	209	1	Intergenic	novelGene_3152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAGTAAAGCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	83618133	83618342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_83618100_83618300
ES_00045013	chr5	+	221	1	Intergenic	novelGene_3154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCTATTTCTGGAAAGT	NA	False	NA	NA	False	NA	NA	NA	86286451	86286672	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_86286500_86286700
ES_00045014	chr5	+	5202	1	Intergenic	novelGene_3157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTAGCCAAGACAGTTA	NA	False	NA	NA	False	NA	NA	NA	89351761	89356963	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_89351800_89357000
ES_00045015	chr5	+	558	1	Intergenic	novelGene_3158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTCGTCATCATCATTTT	NA	False	NA	NA	False	NA	NA	NA	89837220	89837778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_89837200_89837800
ES_00045016	chr5	+	394	1	Intergenic	novelGene_3161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGTTTGTAAAACAAAAGAAA	1322	False	NA	NA	False	NA	NA	NA	91075942	91076336	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_91075900_91076300
ES_00045017	chr5	+	222	1	Intergenic	novelGene_3164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGCTATCTCCTAAGTC	NA	False	NA	NA	False	NA	NA	NA	92180087	92180309	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_92180100_92180300
ES_00045019	chr5	+	259	1	Intergenic	novelGene_3167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1050	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGCTGGATCTTATGGA	7718	False	NA	NA	False	NA	NA	NA	92355564	92355823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_92355600_92355800
ES_00045020	chr5	+	210	1	Intergenic	novelGene_3170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTCTCCAGCCCCAAAAC	NA	False	NA	NA	False	NA	NA	NA	93116608	93116818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_93116600_93116800
ES_00045021	chr5	+	215	1	Intergenic	novelGene_3171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCTTCATTTCATAGAA	NA	False	NA	NA	False	AAAAAG	-11	NA	95114976	95115191	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_95115000_95115200
ES_00045022	chr5	+	228	1	Intergenic	novelGene_3172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	382	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTACCTCTTAACGTAA	NA	False	NA	NA	False	NA	NA	NA	96959445	96959673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_96959400_96959700
ES_00045023	chr5	+	218	1	Intergenic	novelGene_3174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTCTTTTTAATGACTG	2413	False	NA	NA	False	NA	NA	NA	97703219	97703437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_97703200_97703400
ES_00045024	chr5	+	1691	1	Intergenic	novelGene_3176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTCATGTTACAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	98153938	98155629	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_98153900_98155600
ES_00045027	chr5	+	223	1	Intergenic	novelGene_3180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACTTCTTTAACAGCAC	2014	False	NA	NA	False	NA	NA	NA	100431741	100431964	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_100431700_100432000
ES_00045031	chr5	+	228	1	Intergenic	novelGene_3185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAAATGTCTTATAA	1602	False	NA	NA	False	NA	NA	NA	104172289	104172517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104172300_104172500
ES_00045032	chr5	+	492	1	Intergenic	novelGene_3199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGATGGA	NA	False	NA	NA	False	AGTAAA	-24	NA	104926780	104927272	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104926800_104927300
ES_00045033	chr5	+	205	1	Intergenic	novelGene_3201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAGTCTCTGAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	105195551	105195756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_105195600_105195800
ES_00045034	chr5	+	217	1	Intergenic	novelGene_3202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTGTACATTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	105214514	105214731	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_105214500_105214700
ES_00045035	chr5	+	227	1	Intergenic	novelGene_3204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTGCCCATTCTTACTG	NA	False	NA	NA	False	NA	NA	NA	105842996	105843223	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_105843000_105843200
ES_00045036	chr5	+	201	1	Intergenic	novelGene_3207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTCACAAAGAACTGGT	NA	False	NA	NA	False	NA	NA	NA	107043599	107043800	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_107043600_107043800
ES_00045037	chr5	+	243	1	Intergenic	novelGene_3208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGAGATGATCTTTAT	NA	False	NA	NA	False	NA	NA	NA	108195636	108195879	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_108195600_108195900
ES_00045038	chr5	+	235	1	Intergenic	novelGene_3209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACTTAATTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	108337171	108337406	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_108337200_108337400
ES_00045039	chr5	+	247	1	Intergenic	novelGene_3214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	610	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCCATTTGTAAAACTG	NA	False	NA	NA	False	AATAAA	-44	NA	109163393	109163640	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_109163400_109163600
ES_00045041	chr5	+	202	1	Intergenic	novelGene_3219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAGTCCCTGAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	110095808	110096010	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110095800_110096000
ES_00045042	chr5	+	211	1	Intergenic	novelGene_3225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTCTAAATTCTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	110623934	110624145	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110623900_110624100
ES_00045044	chr5	+	210	1	Intergenic	novelGene_3232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTACATTTTTAGAATGAC	8135	False	NA	NA	False	NA	NA	NA	114297408	114297618	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_114297400_114297600
ES_00045045	chr5	+	202	1	Intergenic	novelGene_3235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1285	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATCTGAGTCACCTCA	NA	False	NA	NA	False	NA	NA	NA	114699933	114700135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_114699900_114700100
ES_00045046	chr5	+	220	1	Intergenic	novelGene_3236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCAATCTTAAGGCTAC	NA	False	NA	NA	False	NA	NA	NA	114845253	114845473	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_114845300_114845500
ES_00045047	chr5	+	204	1	Intergenic	novelGene_3238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAGCCTGGAAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	115257929	115258133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115257900_115258100
ES_00045049	chr5	+	212	1	Intergenic	novelGene_3250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAACTTCTTGTAGTCAG	7860	False	NA	NA	False	NA	NA	NA	118162809	118163021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_118162800_118163000
ES_00045050	chr5	+	215	1	Intergenic	novelGene_3251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	251	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAATTTCTTTGAGAG	987	False	NA	NA	False	NA	NA	NA	118638696	118638911	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_118638700_118638900
ES_00045051	chr5	+	203	1	Intergenic	novelGene_3253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCAATGATATCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	119847652	119847855	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_119847700_119847900
ES_00045052	chr5	+	610	1	Intergenic	novelGene_3256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTTGCAAGTTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	120775440	120776050	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_120775400_120776000
ES_00045053	chr5	+	206	1	Intergenic	novelGene_3258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCAACTCTTTACATGG	5107	False	NA	NA	False	NA	NA	NA	121209943	121210149	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121209900_121210100
ES_00045054	chr5	+	244	1	Intergenic	novelGene_3259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTTAACTTCTTTTGC	8050	False	NA	NA	False	NA	NA	NA	121362016	121362260	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121362000_121362300
ES_00045055	chr5	+	266	1	Intergenic	novelGene_3262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATATAATAATAAATCTTT	8080	False	NA	NA	False	NA	NA	NA	121514990	121515256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121515000_121515300
ES_00045056	chr5	+	221	1	Intergenic	novelGene_3264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTAGCTAGTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	121595048	121595269	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121595000_121595300
ES_00045058	chr5	+	214	1	Intergenic	novelGene_3272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTGCTAACCAAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	122472618	122472832	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_122472600_122472800
ES_00045059	chr5	+	226	1	Intergenic	novelGene_3276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTCAAATCCTATTTTT	2158	False	NA	NA	False	NA	NA	NA	123431210	123431436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123431200_123431400
ES_00045060	chr5	+	874	1	Intergenic	novelGene_3279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGCTGCAGTTGTTTGT	NA	False	NA	NA	False	AATAAA	-5	NA	123572958	123573832	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123573000_123573800
ES_00045061	chr5	+	204	1	Intergenic	novelGene_3281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTCAAATTTCTACAAT	NA	False	NA	NA	False	NA	NA	NA	123803087	123803291	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123803100_123803300
ES_00045062	chr5	+	384	1	Intergenic	novelGene_3283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCTTAATTTATTGTTC	NA	False	NA	NA	False	AATACA	-44	NA	123863209	123863593	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123863200_123863600
ES_00045063	chr5	+	380	1	Intergenic	novelGene_3287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATGGCAGTTTTCATGG	NA	False	NA	NA	False	NA	NA	NA	124748632	124749012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_124748600_124749000
ES_00045064	chr5	+	207	1	Intergenic	novelGene_3290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGGCCATTTTCTACAT	1644	False	NA	NA	False	NA	NA	NA	125295709	125295916	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125295700_125295900
ES_00045066	chr5	+	241	1	Intergenic	novelGene_3294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATACTTTATTCTACTGG	NA	False	NA	NA	False	NA	NA	NA	125509315	125509556	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125509300_125509600
ES_00045067	chr5	+	205	1	Intergenic	novelGene_3295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTCCTCTTTAACAGC	5785	False	NA	NA	False	NA	NA	NA	125561223	125561428	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125561200_125561400
ES_00045069	chr5	+	202	1	Intergenic	novelGene_3296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCAATCTTCTTAAAATA	NA	False	NA	NA	False	NA	NA	NA	127731880	127732082	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_127731900_127732100
ES_00045073	chr5	+	207	1	Intergenic	novelGene_3308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTTTTTTTTTTTG	970	False	NA	NA	False	NA	NA	NA	130188166	130188373	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_130188200_130188400
ES_00045074	chr5	+	455	1	Intergenic	novelGene_3310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCGTGGTGGCACGCGCC	1647	False	NA	NA	False	AATAAA	-38	NA	131588166	131588621	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_131588200_131588600
ES_00045075	chr5	+	222	1	Intergenic	novelGene_3311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGTATCTCAGGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	131974864	131975086	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_131974900_131975100
ES_00045076	chr5	+	212	1	Intergenic	novelGene_3314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTTTACTTACTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	134371890	134372102	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_134371900_134372100
ES_00045079	chr5	+	204	1	Intergenic	novelGene_3322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGTGCTTGTAATCCCAG	NA	False	NA	NA	False	AAAAAG	-3	NA	135842719	135842923	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_135842700_135842900
ES_00045080	chr5	+	202	1	Intergenic	novelGene_3325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	727	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAAGCAGTCAGACAGT	NA	False	NA	NA	False	NA	NA	NA	136379460	136379662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_136379500_136379700
ES_00045083	chr5	+	222	1	Intergenic	novelGene_3327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCCTGGCATCCACACG	NA	False	NA	NA	False	NA	NA	NA	137280378	137280600	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_137280400_137280600
ES_00045086	chr5	+	207	1	Intergenic	novelGene_3331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	138154499	138154706	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_138154500_138154700
ES_00045087	chr5	+	224	1	Intergenic	novelGene_3332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTTCAGGTATGGATTT	NA	False	NA	NA	False	AATAAA	-44	NA	138571293	138571517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_138571300_138571500
ES_00045088	chr5	+	217	1	Intergenic	novelGene_3333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAACAAACAAATGAACAAA	NA	False	NA	NA	False	NA	NA	NA	139456071	139456288	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_139456100_139456300
ES_00045089	chr5	+	313	1	Intergenic	novelGene_3335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCCATGTTCTGCTTGG	NA	False	NA	NA	False	NA	NA	NA	139966279	139966592	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_139966300_139966600
ES_00045091	chr5	+	223	1	Intergenic	novelGene_3340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCACCACTTCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	143783969	143784192	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_143784000_143784200
ES_00045093	chr5	+	262	1	Intergenic	novelGene_3341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTGTTTTTGAGGCGA	NA	False	NA	NA	False	NA	NA	NA	144931361	144931623	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_144931400_144931600
ES_00045095	chr5	+	205	1	Intergenic	novelGene_3342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTTCTTTAGAGTGGT	NA	False	NA	NA	False	NA	NA	NA	145204173	145204378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_145204200_145204400
ES_00045096	chr5	+	392	1	Intergenic	novelGene_3343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198180	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_146197800_146198200
ES_00045097	chr5	+	349	1	Intergenic	novelGene_3344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	146206725	146207074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_146206700_146207100
ES_00045102	chr5	+	572	1	Intergenic	novelGene_3345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTCTCAGAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147576649	147577221	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_147576600_147577200
ES_00045103	chr5	+	457	1	Intergenic	novelGene_3346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGGTAAACTGTATC	NA	False	NA	NA	False	NA	NA	NA	148577623	148578080	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_148577600_148578100
ES_00045104	chr5	+	238	1	Intergenic	novelGene_3347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATTCTTGATGTCTGAG	1454	False	NA	NA	False	NA	NA	NA	149370585	149370823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_149370600_149370800
ES_00045105	chr5	+	207	1	Intergenic	novelGene_3348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	513	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTCCTTCTTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	149763111	149763318	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_149763100_149763300
ES_00045106	chr5	+	218	1	Intergenic	novelGene_3349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTGCTGTTCTTGAACT	NA	False	NA	NA	False	NA	NA	NA	150718846	150719064	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_150718800_150719100
ES_00045107	chr5	+	8787	2	Genic_Genomic	ENSMUSG00000040274.12	novel	11525	8	NA	NA	37118	-7	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAACAGCGATTTCAGA	320	False	NA	NA	False	AATAAA	-15	NA	3558066	3581001	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_3558089_3572236
ES_00045108	chr5	+	2517	1	FSM	ENSMUSG00000008307.12	ENSMUST00000198134.2	2227	1	-48	-242	-48	242	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCTTCACTGAAAGTGGG	NA	False	NA	NA	False	NA	NA	NA	3628174	3630691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3628200_3630700
ES_00045109	chr5	+	1647	1	FSM	ENSMUSG00000104891.2	ENSMUST00000198718.2	1263	1	-267	-117	-267	117	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATCTCCAGCCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	3634844	3636491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3634800_3636500
ES_00045115	chr5	+	260	1	FSM	ENSMUSG00000082867.2	ENSMUST00000121828.2	415	1	165	-10	165	10	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTCGTCATTAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	8105303	8105563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8105300_8105600
ES_00045118	chr5	+	4467	12	FSM	ENSMUSG00000054099.12	ENSMUST00000197006.2	4467	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	14.1794869878874	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCCTGTGTTGGTTTAC	NA	False	NA	NA	False	AATAAA	-37	NA	8472872	8504754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8473040_8474796_8474888_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ES_00045119	chr5	+	2731	13	NIC	ENSMUSG00000054099.12	novel	4467	12	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	13.6829171678492	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTTGTTTTACATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	8472932	8504736	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_8473040_8474796_8474888_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ES_00045120	chr5	+	3724	23	Fusion	ENSMUSG00000028970.10_ENSMUSG00000040584.9	novel	4997	28	NA	NA	25281	0	multi-exon	FALSE	canonical	2	22	junction_1	65.190835562388	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7150	False	NA	10	True	ATTAAA	-17	NA	8735357	8916315	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_8735413_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00045122	chr5	+	3646	15	NNC	ENSMUSG00000040584.9	novel	2705	10	NA	NA	-8672	-55	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	62.7505589860459	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATCCATAATTGTAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	8761146	8798515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_8761721_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ES_00045124	chr5	+	4283	27	NIC	ENSMUSG00000028970.10	novel	4306	28	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	62.5254149509853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	NA	False	NA	10	True	ATTAAA	-17	NA	8848150	8916315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00045125	chr5	+	296	1	FSM	ENSMUSG00000105870.2	ENSMUST00000197499.2	301	1	-232	237	-232	-237	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAGTTTTGCTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	8880914	8881210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8880900_8881200
ES_00045126	chr5	+	1614	7	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	90.3119593409422	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5272	False	NA	10	True	ATTAAA	-17	NA	8899220	8916315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_8899419_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ES_00045127	chr5	+	1525	4	FSM	ENSMUSG00000056004.17	ENSMUST00000131626.2	1554	4	-8	37	4	-37	multi-exon	FALSE	canonical	0	0	junction_3	2.16024689946929	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTCTTGAAAGTCAGTA	NA	False	NA	NA	False	ATTAAA	-21	NA	9316121	9461456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_9316457_9430277_9430399_9449180_9449377_9460583
ES_00045128	chr5	+	497	1	FSM	ENSMUSG00000106410.2	ENSMUST00000196976.2	948	1	512	-61	512	61	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAATGTTTAA	NA	False	NA	NA	False	CATAAA	-16	NA	11905712	11906209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_11905700_11906200
ES_00045129	chr5	+	903	1	FSM	ENSMUSG00000104577.2	ENSMUST00000196100.2	1315	1	360	52	360	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTATGGATCTGGAGGTG	5530	False	NA	NA	False	NA	NA	NA	13131154	13132057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_13131200_13132100
ES_00045131	chr5	+	6059	17	FSM	ENSMUSG00000063531.8	ENSMUST00000073957.8	6861	17	65	737	65	-737	multi-exon	FALSE	canonical	0	0	junction_1	1.82752393965168	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTCTTCCTTTCCACA	NA	False	NA	NA	False	AATATA	-15	NA	14075354	14305966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_14076039_14193887_14194049_14212201_14212262_14214072_14214193_14260304_14260399_14274300_14274421_14275566_14275710_14276429_14276545_14276648_14276719_14280120_14280266_14282008_14282232_14283638_14283731_14286055_14286098_14286280_14286448_14290583_14290652_14290976_14291117_14302351
ES_00045132	chr5	+	2066	1	FSM	ENSMUSG00000101013.2	ENSMUST00000190567.2	5410	1	-76	3420	-76	-3420	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCATCTGTCCTCATTG	NA	False	NA	NA	False	NA	NA	NA	21155910	21157976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21155900_21158000
ES_00045133	chr5	+	201	2	Intergenic	novelGene_3076	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGTTCATTTTCAGCT	7847	False	NA	NA	False	NA	NA	NA	21228497	21277539	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_21228528_21277368
ES_00045135	chr5	+	1761	15	NNC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	-15693	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	131.108694585517	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTGCGTTAGTCTGTT	NA	False	NA	10	True	AATAAA	-12	NA	21926445	21962144	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_21926490_21935028_21935172_21942173_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ES_00045136	chr5	+	424	3	FSM	ENSMUSG00000029017.14	ENSMUST00000152440.8	400	3	-24	0	-24	0	multi-exon	FALSE	canonical	3	385	junction_2	10	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTGCGTTAGTCTGTT	NA	False	NA	10	True	AATAAA	-12	NA	21961492	21962144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21961674_21961812_21961889_21961977
ES_00045137	chr5	+	296	1	FSM	ENSMUSG00000105156.2	ENSMUST00000198791.2	296	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATGCCATGAGTGATTC	NA	False	NA	NA	False	AAGAAA	-25	NA	22768954	22769250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_22769000_22769200
ES_00045138	chr5	+	368	2	FSM	ENSMUSG00000028999.16	ENSMUST00000120869.6	1886	2	1	1517	0	-1517	multi-exon	FALSE	canonical	3	91	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACGTGGACTTTTGTC	NA	False	NA	NA	False	AATAAA	-12	NA	23992709	23993484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_23992881_23993287
ES_00045139	chr5	+	1783	4	FSM	ENSMUSG00000028999.16	ENSMUST00000112256.3	1761	4	-22	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	37.2051370407666	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTTTGGTTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	23992716	24002055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24000667
ES_00045140	chr5	+	593	2	Antisense	novelGene_ENSMUSG00000086697.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCTGGAAGATTTCTA	NA	False	NA	13	True	AATAAA	-38	NA	24025786	24026544	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_24026128_24026292
ES_00045141	chr5	+	1430	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	-55	0	-55	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCGTCAGGTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	24055539	24060036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
ES_00045142	chr5	+	3275	17	NIC	ENSMUSG00000023353.15	novel	3207	18	NA	NA	-216	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_12	49.5961424281163	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTTCTCCTTTGGTG	NA	False	NA	11	True	AATAAA	-17	NA	24656958	24707035	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24701730_24701902_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
ES_00045143	chr5	+	544	2	FSM	ENSMUSG00000038181.17	ENSMUST00000197566.2	529	2	-15	0	7	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTGTGCCTTACTACAGG	NA	False	NA	NA	False	NA	NA	NA	24791754	24793246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24792125_24793072
ES_00045144	chr5	+	5355	5	FSM	ENSMUSG00000038181.17	ENSMUST00000088295.9	5371	5	16	0	7	0	multi-exon	FALSE	canonical	1	3	junction_4	16.9022927438854	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTATCTACTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	24791754	24799393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066_24798352_24798615
ES_00045145	chr5	+	404	2	FSM	ENSMUSG00000038181.17	ENSMUST00000197933.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTCTAGACCAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	24798484	24799554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24798803_24799468
ES_00045146	chr5	+	1165	1	FSM	ENSMUSG00000038165.9	ENSMUST00000182745.2	1051	1	13	-127	13	1	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGATGAGATTCAGTGTT	9700	False	NA	NA	False	AATACA	-21	NA	24852694	24853859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24852700_24853900
ES_00045147	chr5	+	374	2	Intergenic	novelGene_3092	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTCATTAGCTGAAAATT	NA	False	NA	NA	False	AATAAA	-27	NA	26213633	26281167	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_26213828_26280987
ES_00045150	chr5	+	1110	1	FSM	ENSMUSG00000105775.2	ENSMUST00000200451.2	999	1	-60	-51	-60	51	mono-exon	FALSE	NA	NA	NA	NA	NA	941	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTTGCTGAGGAGTCCC	NA	False	NA	NA	False	AAGAAA	-45	NA	28743507	28744617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_28743500_28744600
ES_00045153	chr5	+	5079	23	NNC	ENSMUSG00000039000.9	novel	5048	23	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_2	138.994745426575	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGTCAGTTGTGTTCT	NA	False	NA	38	True	ATTAAA	-38	NA	29774208	29881090	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_29774579_29792272_29792327_29794889_29794961_29795807_29795955_29802066_29802183_29803856_29804015_29805638_29805793_29806129_29806351_29807193_29807346_29811904_29812097_29819905_29819993_29824225_29824384_29824552_29824786_29836189_29836295_29837747_29837836_29840628_29840727_29842635_29842769_29851407_29851656_29863207_29863421_29868460_29868650_29868773_29868841_29872911_29873043_29879396
ES_00045154	chr5	+	1588	9	NNC	ENSMUSG00000029131.15	novel	1018	9	NA	NA	0	984	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	653.772597601796	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGTTGCCTAATGATA	4601	False	NA	NA	False	NA	NA	NA	29940992	29973085	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29972049_29972994
ES_00045157	chr5	+	802	3	FSM	ENSMUSG00000029175.18	ENSMUST00000131978.2	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	3	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTCCTCCTGTCCCC	6721	False	NA	NA	False	NA	NA	NA	30805319	30813444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30805443_30812091_30812165_30812838
ES_00045159	chr5	+	1313	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATGATAATAAAAAA	NA	False	NA	-94	True	NA	NA	NA	30869216	30944278	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
ES_00045164	chr5	+	839	3	FSM	ENSMUSG00000029165.18	ENSMUST00000202565.2	839	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	6	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCTGCAGCCTGTCCTGC	2516	False	NA	NA	False	AATAAA	-18	NA	31051547	31053438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31051855_31052340_31052544_31053109
ES_00045171	chr5	+	2328	8	FSM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-219	0	-202	0	multi-exon	FALSE	canonical	3	90	junction_1	11.004637241469	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTGTTTTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-20	NA	31684136	31694166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481
ES_00045173	chr5	+	660	5	FSM	ENSMUSG00000029141.17	ENSMUST00000202273.4	660	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	37.2852182506687	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	1937	False	NA	11	True	AGTAAA	-21	NA	31701126	31711386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
ES_00045174	chr5	+	373	2	FSM	ENSMUSG00000106918.4	ENSMUST00000202953.2	367	2	-6	0	-6	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	9464	False	NA	19	True	AATAAA	-22	NA	31756070	31779988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31756176_31779720
ES_00045175	chr5	+	450	3	NIC	ENSMUSG00000106918.4	novel	478	4	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1111.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTCTCTTAGAGGT	NA	False	NA	17	True	AATAAA	-20	NA	31771289	31779986	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_31771367_31773724_31773832_31779720
ES_00045176	chr5	+	839	5	FSM	ENSMUSG00000106918.4	ENSMUST00000202243.4	839	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	45.0832563153994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATATCTCTATTCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	31771315	31812205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31771367_31773724_31773832_31786959_31787065_31807646_31807829_31811811
ES_00045178	chr5	+	733	3	FSM	ENSMUSG00000052139.19	ENSMUST00000201487.4	742	3	0	9	0	-9	multi-exon	FALSE	canonical	3	727	junction_2	56.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAATAAAGTAAAAAAAAAA	5838	False	NA	NA	False	NA	NA	NA	31855313	31888783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31855422_31859169_31859322_31888310
ES_00045179	chr5	+	461	1	FSM	ENSMUSG00000029135.11	ENSMUST00000201110.2	3472	1	-208	3219	164	-3219	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGGACGCGCCGACTTTT	NA	False	NA	NA	False	NA	NA	NA	32293308	32293769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_32293300_32293800
ES_00045180	chr5	+	733	5	FSM	ENSMUSG00000029134.15	ENSMUST00000202453.4	2938	5	34	2171	34	0	multi-exon	FALSE	canonical	2	4	junction_2	0.707106781186548	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCCATGTTCTTCT	NA	False	NA	NA	False	GATAAA	-19	NA	32510946	32521693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_32511049_32512129_32512235_32512660_32512757_32519870_32519946_32521338
ES_00045181	chr5	+	1309	1	FSM	ENSMUSG00000107211.2	ENSMUST00000202263.2	970	1	61	-400	61	400	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTGTGGAGTACAGAC	NA	False	NA	NA	False	TTTAAA	-45	NA	32577407	32578716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_32577400_32578700
ES_00045182	chr5	+	383	4	FSM	ENSMUSG00000014956.16	ENSMUST00000202078.2	383	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	632.928291532479	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCACCGAAGAAAAGGTGAA	3074	False	NA	NA	False	NA	NA	NA	32616565	32648383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_32616752_32640769_32640809_32642602_32642675_32648297
ES_00045183	chr5	+	209	1	Intergenic	novelGene_3105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTACAAGATGCTCAATTA	NA	False	NA	NA	False	NA	NA	NA	32694399	32694608	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_32694400_32694600
ES_00045186	chr5	+	5563	44	NIC	ENSMUSG00000037426.19	novel	8216	43	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	2	6	junction_1	41.255145376193	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCCCTCC	2004	False	NA	7	True	AATAAA	-8	NA	33021055	33149005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021166_33021501_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094864_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ES_00045187	chr5	+	5217	42	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	-5	-3	combination_of_known_junctions	FALSE	canonical	3	49	junction_32	32.536676783431	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCCCTCCCTCCC	2021	False	NA	4	True	AATAAA	-5	NA	33021072	33149002	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021088_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ES_00045189	chr5	+	5488	44	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	36.6391197307708	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCCCTCC	2052	False	NA	7	True	AATAAA	-8	NA	33021103	33149005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021166_33021501_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ES_00045191	chr5	+	3954	15	FSM	ENSMUSG00000011034.7	ENSMUST00000011178.5	4104	15	0	150	0	-150	multi-exon	TRUE	canonical	0	0	junction_1	3.0572763655761	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTATCTTGGTGCTT	NA	False	NA	NA	False	AATAAA	-36	NA	33261562	33320064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33261936_33274126_33274199_33289293_33289399_33290729_33290790_33291946_33292052_33301306_33301413_33302593_33302675_33303850_33304072_33304286_33304423_33306240_33306349_33309902_33310054_33311889_33312059_33315431_33315648_33316420_33316530_33318122
ES_00045193	chr5	+	7507	14	FSM	ENSMUSG00000037355.15	ENSMUST00000087864.12	7326	14	-137	-44	10	44	multi-exon	FALSE	canonical	1	2	junction_13	2.37342286469869	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTCCTTGAACTCACT	NA	False	NA	NA	False	NA	NA	NA	33535902	33577142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33536347_33536569_33536670_33544999_33545331_33546059_33546181_33546985_33547382_33549087_33549201_33549399_33549529_33559837_33559944_33566152_33566325_33566770_33566894_33568202_33568387_33568904_33569017_33571242_33571418_33572141
ES_00045194	chr5	+	4168	18	FSM	ENSMUSG00000054252.19	ENSMUST00000067150.14	4218	18	50	0	-17	0	multi-exon	FALSE	canonical	2	4	junction_16	3.88235294117647	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCGATTTCTGTTCTG	NA	False	NA	13	True	AATAAA	-20	NA	33879117	33894411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33879273_33879649_33879856_33884990_33885261_33885535_33885590_33887024_33887195_33887279_33887404_33887487_33887679_33889460_33889606_33890065_33890257_33890600_33890747_33891003_33891126_33891199_33891311_33891390_33891582_33891690_33891814_33891896_33891968_33892194_33892333_33892476_33892583_33892757
ES_00045196	chr5	+	3537	11	NIC	ENSMUSG00000057406.17	novel	5738	10	NA	NA	-308	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	93.5256649267996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCATTCTATTTTTAACC	NA	False	NA	NA	False	AATAAA	-14	NA	33977760	34029846	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34028750
ES_00045197	chr5	+	7786	9	FSM	ENSMUSG00000057406.17	ENSMUST00000114399.8	7786	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_8	103.950709473288	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGGACTGGTTTGTGTT	3669	False	NA	NA	False	AATAAA	-21	NA	34000455	34034626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34028750
ES_00045198	chr5	+	7711	10	NNC	ENSMUSG00000057406.17	novel	7786	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_9	103.451545286778	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGGACTGGTTTGTGTT	3698	False	NA	NA	False	AATAAA	-21	NA	34000484	34034626	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34028750_34031995_34032043
ES_00045201	chr5	+	5770	3	FSM	ENSMUSG00000048142.10	ENSMUST00000056355.9	6529	3	736	23	736	-23	multi-exon	FALSE	canonical	2	3	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAACCAGAATTGAAG	NA	False	NA	2	True	NA	NA	NA	34154063	34163237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34154555_34155712_34155878_34158123
ES_00045209	chr5	+	203	2	Intergenic	novelGene_3111	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTTTCATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	34679876	34738780	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_34679930_34738630
ES_00045211	chr5	+	3898	16	FSM	ENSMUSG00000029106.15	ENSMUST00000001108.11	3898	16	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	196.706549628289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTTGGGGGCAACTTTG	NA	False	NA	23	True	AATAAA	-24	NA	34731206	34789649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774252_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34786479_34786517_34787813
ES_00045212	chr5	+	335	1	FSM	ENSMUSG00000107128.2	ENSMUST00000202995.2	469	1	-63	197	-63	-197	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTTAACTTGACACAG	NA	False	NA	NA	False	ATTAAA	-39	NA	34732368	34732703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34732400_34732700
ES_00045214	chr5	+	1570	6	FSM	ENSMUSG00000029104.16	ENSMUST00000135039.2	1570	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	6.59090282131363	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	AAAACA	-19	NA	35034535	35042322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35034546_35034771_35034849_35036146_35036286_35037147_35037271_35040193_35040408_35041315
ES_00045216	chr5	+	3310	11	NIC	ENSMUSG00000029104.16	novel	13215	67	NA	NA	9344	-3136	intron_retention	FALSE	canonical	3	87	junction_2	4.10365690573664	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCCTATGCCCGTGTAA	6650	False	NA	14	True	AGTAAA	-20	NA	35053138	35066742	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ES_00045217	chr5	+	3244	15	FSM	ENSMUSG00000029101.17	ENSMUST00000114284.8	3624	15	380	0	215	0	multi-exon	TRUE	canonical	2	2	junction_1	6.71010508144855	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTGGACTGGCTGGAAA	NA	False	NA	12	True	AATAAA	-12	NA	35147107	35190786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35147213_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
ES_00045218	chr5	+	2647	13	FSM	ENSMUSG00000029101.17	ENSMUST00000114280.8	2777	13	130	0	24	0	multi-exon	FALSE	canonical	2	7	junction_12	5.21948805492987	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCCTTCCAGTGCATGT	NA	False	NA	NA	False	NA	NA	NA	35156551	35190448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35189214
ES_00045219	chr5	+	309	2	FSM	ENSMUSG00000029101.17	ENSMUST00000135403.2	412	2	103	0	103	0	multi-exon	FALSE	canonical	3	21	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGAGCCTAGACCTGGTG	NA	False	NA	NA	False	NA	NA	NA	35180277	35181680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35180527_35181620
ES_00045220	chr5	+	582	2	FSM	ENSMUSG00000067438.6	ENSMUST00000087674.6	1526	2	105	839	105	-839	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACGGAGACGCAGGTCAA	NA	False	NA	NA	False	NA	NA	NA	35546565	35549395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35546834_35549081
ES_00045221	chr5	+	1792	1	FSM	ENSMUSG00000083907.3	ENSMUST00000119494.3	1787	1	63	-68	63	68	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTGTTCAGTGCCCCT	NA	False	NA	NA	False	NA	NA	NA	35711590	35713382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35711600_35713400
ES_00045222	chr5	+	3941	19	NIC	ENSMUSG00000029098.18	novel	3976	19	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	12.8490764427681	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTTTCTCCCCTGTG	NA	False	NA	24	True	AATAAA	-15	NA	35740414	35771145	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_35740479_35741219_35741316_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
ES_00045223	chr5	+	3590	19	NIC	ENSMUSG00000029095.18	novel	1995	22	NA	NA	20	9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	27.4896725838165	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAAATGTGTTCAAGCA	1533	False	NA	NA	False	AATAAA	-26	NA	35915243	36042326	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36032176_36032258_36040649
ES_00045226	chr5	+	864	3	FSM	ENSMUSG00000063646.19	ENSMUST00000173836.8	849	3	-15	0	-15	0	multi-exon	FALSE	canonical	3	99	junction_1	10.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCAGGAGATCCTGGA	NA	False	NA	NA	False	NA	NA	NA	37185663	37248791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_37185944_37242579_37242843_37248470
ES_00045227	chr5	+	2107	12	Fusion	ENSMUSG00000113373.2_ENSMUSG00000063646.19	novel	516	2	NA	NA	-2855	0	multi-exon	FALSE	canonical	3	9	junction_1	48.7096304561383	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	3236	False	NA	17	True	AATAAA	-20	NA	37245568	37282643	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_37245675_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ES_00045228	chr5	+	1658	1	FSM	ENSMUSG00000063646.19	ENSMUST00000201223.2	950	1	-686	-22	-686	22	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAATTTTATTTAAAAAG	1794	False	NA	NA	False	NA	NA	NA	37247737	37249395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_37247700_37249400
ES_00045229	chr5	+	354	3	FSM	ENSMUSG00000029121.17	ENSMUST00000202377.2	766	3	0	412	0	-412	multi-exon	FALSE	canonical	2	2	junction_2	0.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGCTCTGCTACAGCTTC	6913	False	NA	NA	False	NA	NA	NA	37426084	37433682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_37426212_37430690_37430856_37433620
ES_00045231	chr5	+	208	2	Antisense	novelGene_ENSMUSG00000005103.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	65	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	38692563	38694569	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_38692679_38694476
ES_00045232	chr5	+	326	1	FSM	ENSMUSG00000083261.5	ENSMUST00000119884.2	1194	1	0	868	0	-868	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCTCAGTGACCTTAG	NA	False	NA	NA	False	NA	NA	NA	39955556	39955882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_39955600_39955900
ES_00045233	chr5	+	6978	10	NIC	ENSMUSG00000039782.16	novel	7050	11	NA	NA	49	1	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	4.92160768674447	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTGTAATCTTATTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	43390561	43447068	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_43392432_43394649_43394932_43401928_43402020_43419076_43419128_43434773_43434945_43435946_43436037_43438452_43438572_43438713_43438829_43441279_43441462_43443061
ES_00045234	chr5	+	838	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCACTGTGGGCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	45650845	45658087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
ES_00045235	chr5	+	639	4	FSM	ENSMUSG00000039682.13	ENSMUST00000135413.8	795	4	127	29	127	0	multi-exon	FALSE	canonical	3	2266	junction_1	118.23986919253	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCATTGTGTCTGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	45655698	45662142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_45655936_45657744_45657910_45660721_45660881_45662064
ES_00045239	chr5	+	3143	3	FSM	ENSMUSG00000031558.16	ENSMUST00000174061.8	3350	3	-16	223	0	-223	multi-exon	FALSE	canonical	3	152	junction_2	12.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGTTCATTTTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	48140479	48147451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_48142561_48145180_48145253_48146461
ES_00045242	chr5	+	2126	4	FSM	ENSMUSG00000097145.6	ENSMUST00000180601.6	2120	4	-6	0	1	0	multi-exon	FALSE	canonical	0	0	junction_2	7.93025150224688	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	52348014	52355326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_52348280_52350259_52350939_52352142_52352233_52354234
ES_00045244	chr5	+	3034	10	FSM	ENSMUSG00000029186.13	ENSMUST00000031082.8	3034	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	68.4301933215499	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCATTGTTCTGTGTATT	NA	False	NA	7	True	AATAAA	-16	NA	52898951	52926682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_52899311_52900833_52900902_52907949_52908151_52908763_52908896_52910437_52910592_52911978_52912047_52914207_52914308_52918215_52918350_52919773_52919834_52924924
ES_00045246	chr5	+	2076	1	FSM	ENSMUSG00000061461.12	ENSMUST00000204839.2	2076	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	3459	False	NA	NA	False	NA	NA	NA	53424531	53426607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53424500_53426600
ES_00045247	chr5	+	1573	1	FSM	ENSMUSG00000039191.13	ENSMUST00000201721.2	1519	1	-94	40	-94	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACGGCTAACAGACTTGC	NA	False	NA	NA	False	NA	NA	NA	53712953	53714526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53713000_53714500
ES_00045248	chr5	+	5252	11	NNC	ENSMUSG00000039191.13	novel	5252	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	150.273084749066	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53713175	53814704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_53713246_53784728_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ES_00045250	chr5	+	4055	1	FSM	ENSMUSG00000107182.2	ENSMUST00000201536.2	4055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTTTGTGCCTTTGGTT	8568	False	NA	NA	False	NA	NA	NA	54062505	54066560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_54062500_54066600
ES_00045251	chr5	+	1863	4	FSM	ENSMUSG00000060512.8	ENSMUST00000081747.8	2008	4	144	1	-13	-1	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACGGTATATGTGTCTCC	1929	False	NA	NA	False	ATTAAA	-21	NA	63969849	64056967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_63969939_64033792_64033843_64053772_64053827_64055297
ES_00045252	chr5	+	6225	22	FSM	ENSMUSG00000029174.19	ENSMUST00000043893.13	6471	22	243	3	-126	2	multi-exon	FALSE	canonical	1	1	junction_11	108.914329019462	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTCGTGTTGTCTGT	NA	False	NA	7	True	AATAAA	-17	NA	64317036	64508826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_64317849_64330730_64331240_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64441309_64441469_64442032_64442153_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
ES_00045253	chr5	+	372	1	FSM	ENSMUSG00000106566.2	ENSMUST00000196532.2	381	1	-72	81	-72	-81	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGGAAGGGAACTAGGAC	NA	False	NA	NA	False	NA	NA	NA	64715453	64715825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_64715500_64715800
ES_00045254	chr5	+	222	2	Antisense	novelGene_ENSMUSG00000097640.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTGGAAGAAAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	64955290	64957695	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_64955374_64957556
ES_00045255	chr5	+	5012	7	NNC	ENSMUSG00000029178.15	novel	5221	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	258.34435460361	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATAATCATGTGATTACT	NA	False	NA	8	True	AATAAA	-16	NA	64960919	64990244	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319_64988952_64988971
ES_00045256	chr5	+	2720	13	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	9637	144	7283	-144	3prime_fragment	FALSE	canonical	3	13	junction_6	6.51227473485434	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCCAAGTAGATATCTGAA	1831	False	NA	NA	False	NA	NA	NA	65137050	65199085	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597_65188738_65191714_65191788_65196030_65196085_65197966
ES_00045257	chr5	+	1858	12	FSM	ENSMUSG00000037890.14	ENSMUST00000204375.3	1924	12	-9	75	0	-75	multi-exon	FALSE	canonical	3	27	junction_5	6.32847428507531	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAACAAATATGTTACTG	8585	False	NA	NA	False	NA	NA	NA	65357073	65381811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111
ES_00045258	chr5	+	642	1	FSM	ENSMUSG00000107362.2	ENSMUST00000202699.2	1752	1	206	904	206	-904	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTCGGGAAGACATTGTT	NA	False	NA	NA	False	NA	NA	NA	65699477	65700119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65699500_65700100
ES_00045261	chr5	+	491	1	FSM	ENSMUSG00000107254.2	ENSMUST00000201871.2	4323	1	168	3664	168	-3664	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCAAGTGATGGGGGAC	NA	False	NA	NA	False	NA	NA	NA	66069134	66069625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_66069100_66069600
ES_00045262	chr5	+	778	3	Antisense	novelGene_ENSMUSG00000029207.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	2.5	109	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACACGTGCTTGTATCTT	NA	False	NA	NA	False	NA	NA	NA	66499865	66502878	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_66500212_66500896_66500982_66502531
ES_00045263	chr5	+	1223	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	62	0	intron_retention	FALSE	canonical	3	449	junction_3	36.6567086044872	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66833495	66844572	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ES_00045268	chr5	+	1139	8	FSM	ENSMUSG00000029152.14	ENSMUST00000200935.4	1139	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	334.9632937551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450237	73471284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73470785
ES_00045269	chr5	+	1197	1	FSM	ENSMUSG00000107331.2	ENSMUST00000202887.2	1197	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAACTGAGCTTTA	NA	False	NA	NA	False	NA	NA	NA	73468706	73469903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73468700_73469900
ES_00045272	chr5	+	2351	1	FSM	ENSMUSG00000106943.3	ENSMUST00000132389.3	2347	1	-4	0	-4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACAAGACAGGAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	74253716	74256067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_74253700_74256100
ES_00045273	chr5	+	2085	17	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	220	junction_12	176.742209428733	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696133	74756806	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00045274	chr5	+	2143	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-36	10	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	206.218767164378	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTCTTGTAATATTTAAA	NA	False	NA	32	True	AATAAA	-33	NA	74696073	74756816	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00045275	chr5	+	781	1	FSM	ENSMUSG00000029227.16	ENSMUST00000201310.2	2290	1	982	527	308	-332	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGATTGTCCCTGTC	NA	False	NA	NA	False	ATTAAA	-44	NA	74747771	74748552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_74747800_74748600
ES_00045281	chr5	+	230	1	Intergenic	novelGene_3144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATTTTTAATCATGGA	NA	False	NA	-54	True	NA	NA	NA	76794555	76794785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_76794600_76794800
ES_00045285	chr5	+	1687	1	FSM	ENSMUSG00000035851.15	ENSMUST00000198167.2	3335	1	1614	34	1614	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACCTTAGTTCTAAATAG	NA	False	NA	NA	False	NA	NA	NA	86955883	86957570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_86955900_86957600
ES_00045286	chr5	+	4675	17	NIC	ENSMUSG00000035851.15	novel	4346	17	NA	NA	2521	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_11	71.0894847621644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTGTATTTCCTTGT	NA	False	NA	11	True	AATAAA	-19	NA	86956790	86984516	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_86957200_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86977339_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ES_00045289	chr5	+	1253	7	ISM	ENSMUSG00000029291.12	ENSMUST00000196894.5	3703	13	-48	14483	-48	10535	5prime_fragment	FALSE	canonical	3	106	junction_1	12.4454364683963	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTCCAAGCTAATTCGTG	NA	False	NA	NA	False	AATACA	-18	NA	88712850	88776071	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_88713336_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883
ES_00045290	chr5	+	3680	19	NIC	ENSMUSG00000029291.12	novel	2182	15	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	37.3392852398412	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTTGGTTGTCTT	NA	False	NA	11	True	AATAAA	-15	NA	88731420	88799251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_88731814_88731988_88732177_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883_88775950_88778395_88778466_88780297_88780391_88783050_88783135_88785050_88785219_88786839_88786938_88790787_88790908_88791926_88792024_88793395_88793461_88795077_88795106_88796114_88796184_88797690
ES_00045291	chr5	+	446	2	FSM	ENSMUSG00000006262.16	ENSMUST00000155298.3	6258	2	-12	5824	-12	-5824	multi-exon	FALSE	canonical	3	43	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCACCCTTGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	88868701	88891329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_88868981_88891162
ES_00045292	chr5	+	3708	2	Genic_Genomic	ENSMUSG00000006262.16	novel	8967	6	NA	NA	31506	-2162	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTTCGCATTAGTTT	NA	False	NA	10	True	AATAAA	-21	NA	88900341	88909917	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_88900458_88906325
ES_00045293	chr5	+	944	1	FSM	ENSMUSG00000054945.5	ENSMUST00000068250.4	1284	1	310	30	310	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACCAATAAACTAAACCTC	6557	False	NA	NA	False	NA	NA	NA	90515372	90516316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_90515400_90516300
ES_00045294	chr5	+	2427	12	FSM	ENSMUSG00000029407.11	ENSMUST00000201642.2	2427	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	139.72251130469	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTCTGTCATTGTTCC	NA	False	NA	11	True	AATAAA	-19	NA	92285824	92350655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92286023_92300299_92300360_92335563_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
ES_00045295	chr5	+	6406	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113054.9	6401	10	-5	0	-5	0	multi-exon	FALSE	canonical	1	6	junction_1	38.4967531098403	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATATGGAGATTTTTGCG	2175	False	NA	17	True	AATGAA	-22	NA	92957231	93113177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92957421_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ES_00045296	chr5	+	200	2	Intergenic	novelGene_3169	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCCTATCTTATCTATC	2219	False	NA	NA	False	NA	NA	NA	92964386	92966468	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_92964411_92966292
ES_00045298	chr5	+	2570	7	FSM	ENSMUSG00000029385.15	ENSMUST00000121127.2	2570	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.62057979310787	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATTCCTATTTCAGT	NA	False	NA	NA	False	AATAAA	-21	NA	93416172	93424083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
ES_00045299	chr5	+	7362	16	FSM	ENSMUSG00000034663.14	ENSMUST00000035635.10	7387	16	25	0	25	0	multi-exon	FALSE	canonical	0	0	junction_13	6.52856969191738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTCTTTGGAGTTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	97145572	97239726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_97145956_97175689_97175809_97178995_97179102_97184754_97184898_97186279_97186402_97188531_97188614_97192893_97193027_97200955_97201060_97202710_97202791_97204724_97204886_97209264_97209516_97211303_97211403_97212687_97212873_97216257_97216416_97222491_97222603_97234601
ES_00045300	chr5	+	275	2	Intergenic	novelGene_3179	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAATGTTTATTTAATTGA	NA	False	NA	NA	False	NA	NA	NA	100170516	100199940	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_100170599_100199747
ES_00045302	chr5	+	915	7	FSM	ENSMUSG00000035297.15	ENSMUST00000146476.8	897	7	-18	0	-18	0	multi-exon	FALSE	canonical	3	8	junction_1	527.597937195866	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGCATATGGGATCCTA	5683	False	NA	NA	False	NA	NA	NA	100666584	100685220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100666802_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163
ES_00045303	chr5	+	861	2	FSM	ENSMUSG00000106164.2	ENSMUST00000198824.2	1178	2	317	0	317	0	multi-exon	FALSE	canonical	0	0	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATAAAAACAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	101851768	101853716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_101851977_101853063
ES_00045304	chr5	+	3668	10	NIC	ENSMUSG00000029330.9	novel	3924	13	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_6	17.1399468429099	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCGCTGCTGTTTTCTA	NA	False	NA	10	True	AATAAA	-19	NA	101913011	101971724	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ES_00045306	chr5	+	5449	2	ISM	ENSMUSG00000092354.8	ENSMUST00000174312.2	619	3	-38	-2752	-38	674	intron_retention	FALSE	canonical	3	132	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCTTGTCAAGTACCT	NA	False	NA	NA	False	AATAAA	-14	NA	101987982	101994950	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_101988098_101989616
ES_00045308	chr5	+	7961	48	FSM	ENSMUSG00000034573.15	ENSMUST00000048957.11	7915	48	0	-46	0	46	multi-exon	FALSE	canonical	1	2	junction_41	13.2327768430788	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGACAACCAATTCAGACA	NA	False	NA	NA	False	AATAAA	-16	NA	103573366	103746215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837_103689253_103689387_103689483_103691273_103691331_103698090_103698181_103698614_103698723_103698912_103699045_103702561_103703020_103703953_103704086_103705744_103705839_103707002_103707089_103707736_103707900_103709797_103710013_103710140_103710240_103711876_103712206_103712980_103713156_103715891_103716051_103717295_103717468_103717563_103717775_103720955_103721024_103722944_103723007_103726738_103726833_103727563_103727702_103728535_103728619_103730604_103730643_103734571_103734676_103735908_103736058_103737723_103737815_103738881_103739220_103741372_103741589_103742482_103742546_103745558
ES_00045309	chr5	+	7935	21	NNC	ENSMUSG00000029313.19	novel	1613	7	NA	NA	-66	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	24	junction_1	83.8248173275671	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGTGGCTTTTAT	NA	False	NA	24	True	AATAAA	-21	NA	103840173	104003188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_103840470_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078_103964116_103966800_103966853_103973845_103973901_103974008_103974047_103976213_103976377_103981335_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567_104001867_104002366
ES_00045311	chr5	+	354	4	FSM	ENSMUSG00000029304.15	ENSMUST00000132457.8	354	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2700.31323285939	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGAATCTCCTTGCGC	NA	False	NA	NA	False	NA	NA	NA	104583023	104585576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104583115_104584137_104584309_104584406_104584443_104585520
ES_00045312	chr5	+	1705	5	ISM	ENSMUSG00000034462.10	ENSMUST00000130931.2	2282	9	7277	6351	7277	-6351	internal_fragment	FALSE	canonical	3	80	junction_1	2.91547594742265	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAAACCTCCTATAGTTT	5299	False	NA	NA	False	AATAAA	-25	NA	104614712	104631835	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890
ES_00045313	chr5	+	9316	8	NNC	ENSMUSG00000097392.5	novel	9445	8	NA	NA	0	0	intron_retention	FALSE	canonical	2	7	junction_4	4.19912527334259	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGCTTGGTTCTTTTTTT	NA	False	NA	4	True	AATAAA	-20	NA	104656215	104702073	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_104656438_104665288_104670591_104671982_104672015_104672124_104672163_104673683_104673839_104686691_104686840_104689031_104689129_104698751
ES_00045315	chr5	+	373	4	Intergenic	novelGene_3189	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	56	junction_2	24.5266295188629	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCACAATCATCCTCACA	NA	False	NA	NA	False	NA	NA	NA	104757314	104897054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104757425_104836648_104836776_104895405_104895467_104896979
ES_00045316	chr5	+	3175	4	Intergenic	novelGene_3192	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_3	44.9666543118342	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGAGCGGGTGTGGCGG	NA	False	NA	NA	False	NA	NA	NA	104810195	104841167	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104810344_104836648_104836776_104837017_104837079_104838328
ES_00045317	chr5	+	8169	1	Intergenic	novelGene_3194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAGTTTGAATTGATGA	NA	False	NA	NA	False	AATAAA	-20	NA	104841333	104849502	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104841300_104849500
ES_00045320	chr5	+	3137	12	FSM	ENSMUSG00000029283.18	ENSMUST00000118261.8	3129	12	-8	0	-8	0	multi-exon	FALSE	canonical	3	16	junction_1	77.2190187680738	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112418	107132297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107112700_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ES_00045321	chr5	+	3256	2	ISM	ENSMUSG00000029283.18	ENSMUST00000118261.8	3129	12	13096	0	2419	0	3prime_fragment	FALSE	canonical	3	249	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107125522	107132297	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_107127311_107130829
ES_00045322	chr5	+	1594	7	FSM	ENSMUSG00000029279.16	ENSMUST00000112677.10	1607	7	13	0	-4	0	multi-exon	FALSE	canonical	2	3	junction_2	0.74535599249993	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAAACTTTGTGTTTGCC	NA	False	NA	NA	False	AGTAAA	-15	NA	107479053	107498607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941
ES_00045323	chr5	+	1119	9	FSM	ENSMUSG00000111375.5	ENSMUST00000094541.4	1134	9	0	15	0	-15	multi-exon	FALSE	canonical	3	12	junction_3	6.43719659479187	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTATAGTCTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	107585862	107639447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107632912_107632994_107633622_107633720_107638528_107638618_107639344
ES_00045324	chr5	+	1384	1	FSM	ENSMUSG00000104748.2	ENSMUST00000196922.2	1165	1	-197	-22	-197	22	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACCAAAAGGATAGTAATT	NA	False	NA	NA	False	AATAAA	-36	NA	108016142	108017526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108016100_108017500
ES_00045326	chr5	+	4322	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4942	0	intron_retention	FALSE	canonical	3	120	junction_2	625.91977009338	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208597	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00045327	chr5	+	4835	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4942	799	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	671.498880188009	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	108208597	108257669	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108221172_108221321_108228690_108228708_108228787_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00045328	chr5	+	4029	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4921	0	intron_retention	FALSE	canonical	3	67	junction_10	613.271554859672	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208618	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00045329	chr5	+	4154	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4898	0	intron_retention	FALSE	canonical	3	67	junction_11	692.047008880177	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208641	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00045330	chr5	+	4440	17	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	80	junction_1	633.787030476326	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213581	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00045333	chr5	+	4060	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213607	108256870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00045335	chr5	+	620	3	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-101	97365	-62	-3312	5prime_fragment	FALSE	canonical	2	80	junction_2	6.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGGATGAGTGTTTTGT	1042	False	NA	NA	False	AATATA	-18	NA	108280678	108284129	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_108280865_108283287_108283431_108283838
ES_00045336	chr5	+	5124	29	NNC	ENSMUSG00000056531.12	novel	5336	29	NA	NA	-62	-335	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	17.4589898485168	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTTGGGTTGGTGACT	1042	False	NA	NA	False	AAGAAA	-15	NA	108280678	108381159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108280865_108283265_108283431_108283838_108284011_108286779_108286939_108288724_108288832_108296776_108296906_108303624_108303722_108306390_108306513_108309332_108309625_108311513_108311639_108315874_108316030_108319478_108319700_108321616_108321728_108322731_108322864_108328263_108328399_108328679_108328758_108336797_108336915_108339748_108339917_108341566_108341710_108343861_108344026_108345622_108345837_108349190_108349291_108349930_108350048_108354460_108354605_108359959_108360164_108363852_108363991_108368563_108368765_108376445_108376914_108380599
ES_00045338	chr5	+	2174	8	FSM	ENSMUSG00000033623.14	ENSMUST00000112597.8	2169	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	120	junction_2	4.29047354790892	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGTTTGCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	108609092	108637090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701
ES_00045339	chr5	+	1818	11	FSM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-7	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	36.4367945900843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCAGTGAAGGGTTTCA	NA	False	NA	21	True	NA	NA	NA	108777867	108794537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ES_00045340	chr5	+	447	4	FSM	ENSMUSG00000033540.19	ENSMUST00000159464.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	23.3666428910958	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAGCAGGACAATCCCA	NA	False	NA	NA	False	NA	NA	NA	108817324	108828115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108817384_108817984_108818126_108827569_108827678_108827976
ES_00045341	chr5	+	242	2	FSM	ENSMUSG00000033540.19	ENSMUST00000133482.2	600	2	358	0	358	0	multi-exon	FALSE	canonical	3	59	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCCAGGCCCCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	108830828	108831183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108831020_108831132
ES_00045343	chr5	+	2819	5	Intergenic	novelGene_3215	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	7.58287544405155	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	109614960	109627436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_109615053_109618707_109618865_109624129_109624257_109624444_109624506_109625054
ES_00045347	chr5	+	3614	4	Fusion	ENSMUSG00000090015.9_ENSMUSG00000066613.15	novel	2417	4	NA	NA	0	1646	multi-exon	TRUE	canonical	2	75	junction_3	50.6315667894601	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAAGTGTTATTTCTCT	NA	False	NA	NA	False	ATTAAA	-1	NA	110088291	110159923	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_110088419_110088605_110088667_110089940_110089979_110156535
ES_00045348	chr5	+	406	1	Intergenic	novelGene_3220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTTAAGATTACATTGT	NA	False	NA	NA	False	NA	NA	NA	110193490	110193896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110193500_110193900
ES_00045349	chr5	+	221	1	Intergenic	novelGene_3222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	386	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAACAGCAGCAGACAGG	7023	False	NA	NA	False	NA	NA	NA	110238175	110238396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110238200_110238400
ES_00045351	chr5	+	2638	17	FSM	ENSMUSG00000014668.16	ENSMUST00000198633.5	2623	17	-15	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	84.7737568104068	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCCTGCTGAAACTCCA	NA	False	NA	NA	False	NA	NA	NA	110283707	110319525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ES_00045354	chr5	+	1559	6	FSM	ENSMUSG00000007080.15	ENSMUST00000141506.2	1723	6	164	0	164	0	multi-exon	FALSE	canonical	3	189	junction_1	32.7865826215542	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTTTGAAGCGTCTGT	NA	False	NA	10	True	AGTAAA	-1	NA	110481515	110485302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
ES_00045356	chr5	+	270	2	FSM	ENSMUSG00000029504.6	ENSMUST00000143087.2	306	2	36	0	36	0	multi-exon	FALSE	canonical	3	143	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTGGACAGGCATTC	NA	False	NA	NA	False	AAAACA	-41	NA	110804536	110804976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110804784_110804953
ES_00045357	chr5	+	2210	14	FSM	ENSMUSG00000029521.8	ENSMUST00000199937.5	2190	14	-20	0	-16	0	multi-exon	TRUE	canonical	2	3	junction_4	77.8046408010314	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9162	False	NA	19	True	NA	NA	NA	110987828	111021999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ES_00045358	chr5	+	2394	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTAGTTTGTTGTGGCT	9207	False	NA	27	True	AAAACA	-3	NA	110987873	111022007	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ES_00045359	chr5	+	2017	3	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	548	-5	intron_retention	FALSE	canonical	3	239	junction_2	20.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	NA	False	NA	26	True	AAAACA	-2	NA	111014684	111022006	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_111015960_111019892_111019974_111021345
ES_00045360	chr5	+	396	2	FSM	ENSMUSG00000104602.2	ENSMUST00000198807.2	406	2	8	2	8	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATATATATATTTAGTA	NA	False	NA	NA	False	NA	NA	NA	111024476	111025137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_111024811_111025075
ES_00045361	chr5	+	10703	23	FSM	ENSMUSG00000033209.18	ENSMUST00000156290.9	10688	23	-15	0	-15	0	multi-exon	TRUE	canonical	1	3	junction_2	5.32128891364483	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTCCGAGTCTCTTT	NA	False	NA	14	True	ATTAAA	-23	NA	111027653	111437646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_111027855_111040697_111040977_111232887_111233036_111248559_111248833_111249835_111249967_111330789_111331298_111370975_111372318_111373423_111373948_111377213_111377324_111378915_111379046_111381111_111381331_111383341_111383508_111414400_111414542_111419060_111419206_111424027_111424208_111424649_111425371_111426341_111426467_111427824_111428057_111428540_111428618_111429745_111429770_111430636_111430767_111431810_111431919_111432857
ES_00045363	chr5	+	1945	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-70	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	139.333433014318	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGAGTGAGTAGCTTTC	NA	False	NA	20	True	AATAAA	-30	NA	112436557	112463220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_112436679_112451765_112451838_112455431_112456421_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ES_00045366	chr5	+	334	1	FSM	ENSMUSG00000105031.2	ENSMUST00000199823.2	204	1	-27	-103	-27	103	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGGGCTTGGGCTCCCT	NA	False	NA	34	True	AATAAA	-29	NA	113905156	113905490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_113905200_113905500
ES_00045368	chr5	+	3332	13	NIC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	12	-1212	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	11.3293497901101	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGTGCGGTGCTTTAGT	NA	False	NA	10	True	AATAAA	-21	NA	114238432	114261569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249932_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
ES_00045369	chr5	+	8585	53	FSM	ENSMUSG00000042010.17	ENSMUST00000102582.8	8788	53	203	0	203	0	multi-exon	FALSE	canonical	2	2	junction_1	14.1468811249028	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCCTTGATTTATT	NA	False	NA	9	True	AATAAA	-19	NA	114284798	114388822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114284887_114303569_114304202_114322110_114322244_114326391_114326531_114328136_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363914_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ES_00045371	chr5	+	640	4	FSM	ENSMUSG00000002486.16	ENSMUST00000152999.8	640	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	32.7651576458218	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGGGCCTGCGGGAGCAA	NA	False	NA	NA	False	NA	NA	NA	114845879	114847501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114846022_114846714_114846900_114847094_114847274_114847367
ES_00045372	chr5	+	3138	12	FSM	ENSMUSG00000002486.16	ENSMUST00000124242.5	3138	12	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_2	9.39491686019186	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCTGTCACTGCTGC	NA	False	NA	15	True	AGTAAA	-18	NA	114845924	114860388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114858330_114859168
ES_00045374	chr5	+	1361	13	FSM	ENSMUSG00000041870.18	ENSMUST00000137519.2	1361	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_8	106.281857968956	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGTATGAGAGGTAACAG	712	False	NA	NA	False	NA	NA	NA	114924105	114941672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936578_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617
ES_00045377	chr5	+	824	6	Fusion	ENSMUSG00000060152.15_ENSMUSG00000041733.11	novel	1025	6	NA	NA	0	-128	multi-exon	FALSE	non_canonical	0	0	junction_5	325.291254109298	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCGAGCACTTGGGAGG	NA	False	NA	NA	False	NA	NA	NA	115376037	115418842	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697_115379027_115418815
ES_00045378	chr5	+	575	4	FSM	ENSMUSG00000060152.15	ENSMUST00000128830.5	575	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	380.536755415587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAATAAACATTCCTAAA	NA	False	NA	-11	True	NA	NA	NA	115376093	115379003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115376129_115378220_115378371_115378531_115378616_115378697
ES_00045382	chr5	+	3084	15	NIC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_12	16.062378404209	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2405	False	NA	15	True	AATAAA	-15	NA	115567673	115593757	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588878_115589034_115589515_115589580_115591884
ES_00045386	chr5	+	772	2	FSM	ENSMUSG00000029528.20	ENSMUST00000138139.2	772	2	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCGGAACACTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	115689997	115690851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115690081_115690162
ES_00045387	chr5	+	2225	5	NIC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-12	-38	intron_retention	FALSE	canonical	3	7201	junction_2	6546.74999522664	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTTTCCAGGTGTGAA	NA	False	NA	-35	True	NA	NA	NA	115697583	115701748	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484
ES_00045389	chr5	+	8548	58	NNC	ENSMUSG00000041638.19	novel	8555	58	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_51	93.6806754047522	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGGAGTTTGTCATTTT	NA	False	NA	NA	False	AATAAA	-23	NA	115703323	115760713	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456_115721610_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032_115729127_115730123_115730238_115730367_115730567_115731635_115731792_115732091_115732274_115733051_115733133_115733351_115733496_115734914_115735043_115735124_115735315_115735432_115735504_115736759_115736926_115737130_115737326_115740444_115740692_115741271_115741394_115742068_115742184_115742876_115743057_115744531_115744753_115747287_115747357_115747524_115747664_115747749_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753663_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
ES_00045397	chr5	+	2247	1	ISM	ENSMUSG00000029516.20	ENSMUST00000051704.15	9514	47	161050	7	19520	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACAATACGTTCACTC	NA	False	NA	NA	False	AATAAA	-37	NA	116144752	116146999	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_116144800_116147000
ES_00045398	chr5	+	4467	21	FSM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	2.74727137356323	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCCTGGCTGTGTTCTTGT	1386	False	NA	NA	False	AATAAA	-14	NA	117258193	117413282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
ES_00045399	chr5	+	4205	21	FSM	ENSMUSG00000061288.14	ENSMUST00000179276.8	4302	21	97	0	44	0	multi-exon	FALSE	canonical	0	0	junction_1	2.87402157263998	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAAAAAATGATGACGA	NA	False	NA	-10	True	CATAAA	-39	NA	117271749	117413140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117271841_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
ES_00045400	chr5	+	392	3	FSM	ENSMUSG00000029364.16	ENSMUST00000136895.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_2	4.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATGAAAGAGTTCCTCA	4268	False	NA	NA	False	NA	NA	NA	117514514	117515580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_117514673_117514755_117514864_117515454
ES_00045403	chr5	+	886	8	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	22.6445470302252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4359	False	NA	9	True	AATAAA	-14	NA	118174086	118199935	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
ES_00045405	chr5	+	2494	6	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	38	-2981	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.3255753472143	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCTGTGGAATGTGG	1677	False	NA	7	True	NA	NA	NA	118383329	118401177	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129
ES_00045406	chr5	+	552	1	FSM	ENSMUSG00000082365.3	ENSMUST00000119191.2	478	1	-28	-46	-28	46	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCTATTTTATAGCATG	1350	False	NA	NA	False	NA	NA	NA	118640876	118641428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118640900_118641400
ES_00045407	chr5	+	9456	33	NNC	ENSMUSG00000018076.13	novel	9296	31	NA	NA	-293	14711	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.700151431213	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTCGATTGACTTA	NA	False	NA	NA	False	NA	NA	NA	118698450	118918214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_118698507_118698704_118698923_118731397_118731636_118809077_118809163_118818952_118819037_118856547_118856694_118859439_118859635_118859829_118860004_118862052_118862219_118864325_118864431_118866212_118866945_118867834_118868061_118868976_118869083_118869392_118869518_118872023_118872124_118876379_118876601_118876859_118877066_118879890_118880841_118883073_118883254_118883706_118883931_118885383_118885577_118886628_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765_118903501_118918186
ES_00045410	chr5	+	3941	24	NNC	ENSMUSG00000029594.13	novel	4010	24	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_18	25.2166416680182	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTCACTCTGTCAC	NA	False	NA	21	True	AATAAA	-31	NA	120254595	120337046	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279618_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
ES_00045411	chr5	+	2035	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25821	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	52.429052590673	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTAATTTATTCTCCC	NA	False	NA	19	True	ATTAAA	-25	NA	121026777	121059715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_121026866_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ES_00045412	chr5	+	3098	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25370	-3	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	46.9668914118115	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGAATTAATTTATTCT	NA	False	NA	16	True	ATTAAA	-22	NA	121027228	121059712	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_121028383_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ES_00045413	chr5	+	2575	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-1394	-4	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	45.8781598972273	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAATGAATTAATTTATTC	NA	False	NA	15	True	ATTAAA	-21	NA	121051204	121059711	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_121051837_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ES_00045414	chr5	+	9019	37	NNC	ENSMUSG00000042744.17	novel	15482	76	NA	NA	-61	-7	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_12	6.19786900853137	262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGAGTCTGTGGTCACC	5323	False	NA	12	True	AATAAA	-23	NA	121458024	121506633	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_121458164_121459460_121459644_121460254_121460420_121460698_121460869_121461980_121462097_121463253_121463358_121466147_121466310_121466425_121466575_121467127_121467208_121467520_121467685_121469738_121469977_121470984_121471122_121471485_121471613_121472399_121472538_121474652_121474790_121477487_121477649_121479935_121480118_121480712_121480919_121481155_121481287_121481541_121481748_121482745_121482926_121486481_121487789_121488492_121488701_121491553_121491778_121491876_121492029_121493628_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
ES_00045416	chr5	+	972	9	ISM	ENSMUSG00000029452.19	ENSMUST00000031405.12	1288	10	40	986	40	-10	5prime_fragment	FALSE	canonical	2	4	junction_4	6.81794507164732	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAAGGCAAGCTAGTAC	NA	False	NA	NA	False	TATAAA	-6	NA	121601254	121632498	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266
ES_00045417	chr5	+	311	2	Intergenic	novelGene_3266	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCTGTCTCGAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	121701294	121702294	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121701346_121702034
ES_00045418	chr5	+	1024	4	NIC	ENSMUSG00000029458.15	novel	3744	12	NA	NA	-89	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	77.9287423797464	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACATTGGCCTTTTTTTTT	1124	False	NA	NA	False	NA	NA	NA	121798842	121803704	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121798912_121800062_121800225_121801304_121801555_121803161
ES_00045419	chr5	+	3796	23	NIC	ENSMUSG00000042605.17	novel	3294	19	NA	NA	-32	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	70.866260374766	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATACCCAGTTAGTGTGT	338	False	NA	0	True	TTTAAA	-3	NA	121849367	121953009	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121849587_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
ES_00045420	chr5	+	3883	22	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-95	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	59.3058867956359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	798	False	NA	4	True	TTTAAA	-7	NA	121849827	121953013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
ES_00045421	chr5	+	4166	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	58.4990588520743	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGTTAGTGTGTGTT	893	False	NA	3	True	TTTAAA	-6	NA	121849922	121953012	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ES_00045427	chr5	+	890	4	FSM	ENSMUSG00000029462.19	ENSMUST00000111729.10	874	4	-16	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	1030.830194013	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGCATGAAGAGAAAGAATC	716	False	NA	-58	True	NA	NA	NA	122492468	122501274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122492540_122498091_122498268_122500098_122500335_122500867
ES_00045431	chr5	+	596	6	FSM	ENSMUSG00000029465.15	ENSMUST00000196969.5	599	6	0	3	0	-3	multi-exon	FALSE	canonical	0	0	junction_5	232.246076393122	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAATATCCAGACTGATG	9477	False	NA	NA	False	AATACA	-9	NA	122534929	122552244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122552066
ES_00045432	chr5	+	2022	10	NIC	ENSMUSG00000029466.12	novel	2751	11	NA	NA	9	-458	combination_of_known_splicesites	FALSE	canonical	1	4	junction_8	88.9181896151988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTGAGACTCTTCCTTT	NA	False	NA	30	True	AATAAA	-26	NA	122560552	122582517	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122579352_122579504_122581866
ES_00045433	chr5	+	3179	1	FSM	ENSMUSG00000106375.2	ENSMUST00000196562.2	4690	1	1478	33	1478	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTAGAAAAGGAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	122635699	122638878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122635700_122638900
ES_00045434	chr5	+	712	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	10.4029910228848	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGAATTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	122782071	122793325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
ES_00045436	chr5	+	1726	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	40	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	663	False	NA	9	True	AATAAA	-16	NA	122988259	123007008	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ES_00045439	chr5	+	1366	1	FSM	ENSMUSG00000105881.2	ENSMUST00000195992.2	2639	1	-562	1835	-562	-1835	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGCGTCTAGAAGAAAAA	2682	False	NA	NA	False	AAAACA	-45	NA	123276431	123277797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_123276400_123277800
ES_00045440	chr5	+	3350	5	ISM	ENSMUSG00000038384.17	ENSMUST00000163030.9	8857	17	19567	-5	-949	5	3prime_fragment	TRUE	canonical	0	0	junction_1	2.58602010819715	1321	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGTCTCTCTTGCTCTCC	NA	False	NA	36	True	TATAAA	-36	NA	123299822	123306697	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_123299981_123301216_123301349_123301434_123301555_123301633_123301772_123303895
ES_00045441	chr5	+	208	3	Antisense	novelGene_ENSMUSG00000094664.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	37	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTATTTTTCTAAGCTT	NA	False	NA	NA	False	NA	NA	NA	123369796	123449983	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_123369815_123408228_123408244_123449808
ES_00045442	chr5	+	5385	3	FSM	ENSMUSG00000065191.4_ENSMUSG00000029438.10	ENSMUST00000117971.2	4642	3	-29	-714	23	-8	multi-exon	FALSE	canonical	3	24	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCCCCTATAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	123482533	123499055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_123482785_123489929_123490012_123494003
ES_00045444	chr5	+	1123	2	FSM	ENSMUSG00000029414.12	ENSMUST00000199838.2	347	2	-60	-716	-60	716	multi-exon	FALSE	canonical	3	399	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTATGGAGGTCAGGAAGT	NA	False	NA	NA	False	NA	NA	NA	123887718	123892839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_123887888_123891885
ES_00045451	chr5	+	1498	7	FSM	ENSMUSG00000023707.14	ENSMUST00000119269.6	1474	7	-24	0	0	0	multi-exon	TRUE	canonical	2	14	junction_5	31.3421973277773	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCCTCTGTTTGCTAT	NA	False	NA	5	True	TATAAA	-10	NA	124250359	124253539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252541_124252709_124252777
ES_00045452	chr5	+	210	1	Intergenic	novelGene_3285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCCTTCTTTCCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124347152	124347362	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_124347200_124347400
ES_00045453	chr5	+	1789	7	FSM	ENSMUSG00000049327.18	ENSMUST00000199798.5	1789	7	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	269.798330033544	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATCAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	124578029	124599574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124578079_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ES_00045455	chr5	+	425	1	FSM	ENSMUSG00000029390.14	ENSMUST00000197112.2	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATATACAGTAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	124679398	124679823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124679400_124679800
ES_00045457	chr5	+	686	9	FSM	ENSMUSG00000029387.11	ENSMUST00000126466.8	734	9	0	48	0	-48	multi-exon	FALSE	canonical	3	570	junction_1	85.5415651890939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGGGGATACCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	124717228	124730642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543
ES_00045458	chr5	+	257	1	FSM	ENSMUSG00000029387.11	ENSMUST00000200670.2	2531	1	204	2070	180	-2070	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTCGACATTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	124717408	124717665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124717400_124717700
ES_00045460	chr5	+	1131	8	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	0	55524	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5279.91317182781	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTGAGAAATGCTTTTT	475	False	NA	NA	False	NA	NA	NA	129097265	129156911	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837_129100228_129156864
ES_00045461	chr5	+	3280	13	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	47276	-5	47269	5	3prime_fragment	FALSE	canonical	3	14	junction_1	14.247806848775	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAGCGTCACAATCTG	NA	False	NA	34	True	AATAAA	-22	NA	129221089	129281668	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_129221173_129239658_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ES_00045462	chr5	+	1848	1	FSM	ENSMUSG00000029439.15	ENSMUST00000198423.2	655	1	-1193	0	-20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGCCTTTTTCCTGTGG	NA	False	NA	NA	False	AATAAA	-27	NA	129578264	129580112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129578300_129580100
ES_00045463	chr5	+	3193	18	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	23.627296395231	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGGGCTCTCCTTC	NA	False	NA	13	True	AATAAA	-26	NA	129578317	129648445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ES_00045466	chr5	+	5844	4	FSM	ENSMUSG00000104814.2_ENSMUSG00000029439.15	ENSMUST00000199692.2	1277	4	-4570	3	-558	0	multi-exon	FALSE	canonical	3	104	junction_1	11.1455023315337	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGGGCTCTCCTTC	NA	False	NA	13	True	AATAAA	-26	NA	129632652	129648445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129637870_129646704_129646879_129647539_129647613_129648065
ES_00045467	chr5	+	3367	10	NNC	ENSMUSG00000029436.10	novel	6422	10	NA	NA	26	-2892	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_8	58.5586126125877	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACAGGTTGACAGCTCAG	NA	False	NA	7	True	AATAAA	-13	NA	129661258	129685271	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_129661513_129671607_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682715_129682837_129683339
ES_00045468	chr5	+	957	4	FSM	ENSMUSG00000034211.15	ENSMUST00000154358.6	514	4	-15	-428	-3	0	multi-exon	FALSE	canonical	3	15	junction_2	362.116924026849	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	751	False	NA	-10	True	AAGAAA	-35	NA	129792557	129795511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792614_129792747_129792977_129793790_129793931_129794979
ES_00045469	chr5	+	946	4	NIC	ENSMUSG00000034211.15	novel	832	4	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_2	350.330637477734	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	777	False	NA	23	True	CATAAA	-12	NA	129792583	129795544	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_129792614_129792747_129792959_129793790_129793931_129794979
ES_00045470	chr5	+	868	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121813.8	868	3	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	376	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	815	False	NA	39	True	AGTAAA	-34	NA	129792621	129795354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129792975_129793790_129793931_129794979
ES_00045471	chr5	+	2221	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	371	0	at_least_one_novel_splicesite	TRUE	canonical	2	187	junction_5	1153.86738442007	293	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	False	NA	38	True	AATAAA	-30	NA	129864432	129875212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867756_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ES_00045475	chr5	+	384	4	FSM	ENSMUSG00000025538.16	ENSMUST00000201029.4	375	4	-9	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	221.89837513801	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGTGGGTCATCTTCCCG	NA	False	NA	NA	False	GGGGCT	-7	NA	129875851	129883679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129875928_129881714_129881827_129882863_129882909_129883528
ES_00045476	chr5	+	213	1	Intergenic	novelGene_3304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTGGTGGCAGCGCAC	NA	False	NA	NA	False	NA	NA	NA	129887527	129887740	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129887500_129887700
ES_00045477	chr5	+	625	3	FSM	ENSMUSG00000095789.7	ENSMUST00000195766.6	628	3	0	3	0	-3	multi-exon	FALSE	canonical	3	9	junction_1	0.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTAACTCTTCTGGCT	NA	False	NA	NA	False	ATTAAA	-17	NA	129937380	129940119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129937763_129939738_129939788_129939925
ES_00045480	chr5	+	760	3	FSM	ENSMUSG00000053094.16	ENSMUST00000202305.4	641	3	88	-207	-8	207	multi-exon	FALSE	canonical	2	4	junction_1	266.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGACACAGCTCATTGT	6514	False	NA	NA	False	CATAAA	-27	NA	130248672	130261089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130248761_130258289_130258468_130260595
ES_00045481	chr5	+	4663	9	FSM	ENSMUSG00000056310.15	ENSMUST00000173375.2	4698	9	0	35	0	-35	multi-exon	FALSE	canonical	3	48	junction_1	89.5809689610466	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTACAATGTACTTACATG	3512	False	NA	NA	False	NA	NA	NA	130284459	130314192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621
ES_00045482	chr5	+	261	2	Antisense	novelGene_ENSMUSG00000107076.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	59	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTTTAATCCCAGTACT	NA	False	NA	NA	False	AAAACA	-23	NA	134282727	134335832	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_134282811_134335654
ES_00045483	chr5	+	1207	7	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	36.2583323756991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACCAGTGTGTACTGTA	3409	False	NA	3	True	NA	NA	NA	134961218	134970085	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
ES_00045484	chr5	+	987	6	FSM	ENSMUSG00000040532.15	ENSMUST00000111216.8	972	6	-15	0	-15	0	multi-exon	FALSE	canonical	2	3	junction_1	236.865024855929	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAACACTTTTAATGAAT	NA	False	NA	-29	True	NA	NA	NA	135037990	135040985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135038070_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ES_00045485	chr5	+	1466	4	FSM	ENSMUSG00000040532.15	ENSMUST00000123227.3	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	61.059169845505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038544	135041024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135038694_135038835_135038972_135039740_135040235_135040337
ES_00045486	chr5	+	347	4	FSM	ENSMUSG00000005373.14	ENSMUST00000202431.4	412	4	65	0	65	0	multi-exon	FALSE	canonical	3	3	junction_1	12.0277457017791	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCGAATACCACAAGTGGAG	NA	False	NA	NA	False	NA	NA	NA	135118808	135150640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135118915_135142480_135142588_135150359_135150443_135150589
ES_00045488	chr5	+	3617	17	FSM	ENSMUSG00000005373.14	ENSMUST00000005507.10	3622	17	0	5	0	-5	multi-exon	FALSE	canonical	2	15	junction_13	3.60067268020852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAGGCAGAGGCAGGTT	3434	False	NA	NA	False	AATATA	-44	NA	135135771	135167231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105_135162263_135162397_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
ES_00045491	chr5	+	1456	6	FSM	ENSMUSG00000053388.11	ENSMUST00000111180.9	1456	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	2.31516738055805	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCCTGGTCTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	135382148	135396508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
ES_00045492	chr5	+	219	2	Antisense	novelGene_ENSMUSG00000039959.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCCAGTTTTGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	135429991	135440773	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_135430023_135440585
ES_00045495	chr5	+	2837	21	NNC	ENSMUSG00000004952.14	novel	2914	21	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	16.8827574761945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGAGGTGTTGGGTTGGG	2240	False	NA	NA	False	AATAAA	-20	NA	136112857	136140714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140273
ES_00045496	chr5	+	2138	14	NNC	ENSMUSG00000004952.14	novel	3057	20	NA	NA	3056	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	19.1953520015013	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGCTGAGGTGTTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	136127499	136140709	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_136127634_136129755_136129874_136130097_136130275_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ES_00045497	chr5	+	1687	3	FSM	ENSMUSG00000039754.11	ENSMUST00000125923.2	1040	3	193	-840	149	3	multi-exon	FALSE	canonical	2	7	junction_1	27.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTCCTTTTCCCATCCC	NA	False	NA	NA	False	AATAAA	-29	NA	136165204	136170472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136165254_136168191_136168390_136169032
ES_00045498	chr5	+	441	4	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0.816496580927726	187	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCAGCAATGTCTAACC	NA	False	NA	NA	False	NA	NA	NA	136766544	136777994	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_136766691_136774222_136774384_136777293_136777375_136777941
ES_00045499	chr5	+	303	1	Intergenic	novelGene_3326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAGATCTGACTCCCTC	NA	False	NA	NA	False	NA	NA	NA	136787227	136787530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_136787200_136787500
ES_00045503	chr5	+	6231	28	Fusion	ENSMUSG00000106237.2_ENSMUSG00000029714.12	novel	5440	24	NA	NA	-2	0	multi-exon	FALSE	canonical	0	0	junction_24	18.0746053352401	83	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTGCCAGCTTTTCC	NA	False	NA	29	True	AATAAA	-24	NA	137508512	137526197	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_137508883_137515646_137515874_137516743_137516875_137516949_137517016_137517139_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522912_137523104_137523192_137523354_137523433_137523622_137523694_137523822_137523913
ES_00045510	chr5	+	1221	2	FSM	ENSMUSG00000029725.11	ENSMUST00000152298.2	476	2	-745	0	-50	0	multi-exon	FALSE	canonical	3	393	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777060	137778372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137778025_137778115
ES_00045511	chr5	+	2115	16	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	17	-6	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	25.4046364972136	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGAGCTGTGCTTTGTGT	7094	False	NA	26	True	AATAAA	-19	NA	137786076	137820877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ES_00045512	chr5	+	2598	12	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	-202	-5	intron_retention	FALSE	canonical	3	70	junction_6	10.9159069615579	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCTGTGCTTTGTGTG	9386	False	NA	27	True	AATAAA	-20	NA	137797248	137820878	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ES_00045513	chr5	+	746	1	FSM	ENSMUSG00000105787.2	ENSMUST00000200510.2	742	1	14	-18	14	18	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGGTTTGGCCTGGAAC	NA	False	NA	NA	False	NA	NA	NA	137926550	137927296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_137926600_137927300
ES_00045514	chr5	+	887	4	ISM	ENSMUSG00000029729.13	ENSMUST00000019660.11	8261	6	15	10663	15	-7332	5prime_fragment	FALSE	canonical	3	10	junction_3	2.05480466765633	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCATGGGCCCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	138083360	138095421	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_138083494_138091181_138091695_138092253_138092402_138095328
ES_00045521	chr5	+	4456	31	FSM	ENSMUSG00000036928.15	ENSMUST00000159483.8	4456	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	34.4118196748346	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278787	138310652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297581_138297691_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ES_00045523	chr5	+	655	1	FSM	ENSMUSG00000104686.2	ENSMUST00000198787.2	1470	1	80	735	80	-735	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACAGTGTCTGCCTCCAT	6925	False	NA	NA	False	CATAAA	-38	NA	138617629	138618284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138617600_138618300
ES_00045524	chr5	+	5776	1	FSM	ENSMUSG00000075585.4	ENSMUST00000100518.3	5521	1	-390	135	-390	-135	mono-exon	FALSE	NA	NA	NA	NA	NA	347	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGTCCTCTAAAAGAGCA	3425	False	NA	NA	False	NA	NA	NA	138980420	138986196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_138980400_138986200
ES_00045525	chr5	+	3908	22	NIC	ENSMUSG00000036817.15	novel	2608	22	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	224	junction_6	222.683764466375	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGTCTTATCTCTGC	NA	False	NA	32	True	AATAAA	-18	NA	139186421	139235594	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00045526	chr5	+	4053	23	NIC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_16	206.64914170786	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186424	139235550	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00045527	chr5	+	3940	22	NIC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	224	junction_8	233.254943100303	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186426	139235550	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00045531	chr5	+	204	1	Intergenic	novelGene_3336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGCTCTCAGAGAATGCC	NA	False	NA	NA	False	AAAAAG	-3	NA	140364631	140364835	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_140364600_140364800
ES_00045532	chr5	+	2975	20	NNC	ENSMUSG00000056076.14	novel	2945	19	NA	NA	0	5296	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	737.289150102404	235	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGTGGAGGGACTG	NA	False	NA	NA	False	NA	NA	NA	140405082	140434411	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628_140429117_140434382
ES_00045533	chr5	+	2396	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	7	-1637	7	66	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACAGAGGCCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	140491336	140511545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_140491483_140509295
ES_00045534	chr5	+	1860	6	ISM	ENSMUSG00000029570.6	ENSMUST00000199848.2	1074	7	571	-965	571	94	3prime_fragment	FALSE	canonical	2	6	junction_1	5.74108003776293	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTCATGACATAGAGAAGA	NA	False	NA	101	True	NA	NA	NA	140598010	140601394	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_140598146_140598257_140598412_140598514_140598601_140598910_140599077_140599945_140600032_140600161
ES_00045537	chr5	+	1743	4	ISM	ENSMUSG00000050022.17	ENSMUST00000120630.3	4037	7	12726	1381	-1031	0	3prime_fragment	FALSE	canonical	0	0	junction_1	5.09901951359278	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGTGTCATGTATTGT	9909	False	NA	23	True	NA	NA	NA	140734006	140739065	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_140734027_140734369_140734543_140734909_140735087_140737692
ES_00045538	chr5	+	1905	5	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	10	-6	intron_retention	FALSE	canonical	3	75	junction_2	9.28372231381357	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCTGAGCAGTGGTGGC	5889	False	NA	8	True	AATAAA	-13	NA	142459863	142463551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
ES_00045541	chr5	+	716	1	FSM	ENSMUSG00000105609.2	ENSMUST00000200220.2	1026	1	-186	496	-186	-496	mono-exon	FALSE	NA	NA	NA	NA	NA	693	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTGCGGCCGCGCGCTC	NA	False	NA	NA	False	NA	NA	NA	143300407	143301123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143300400_143301100
ES_00045542	chr5	+	260	1	FSM	ENSMUSG00000105206.2	ENSMUST00000198525.2	1251	1	16	975	16	-975	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGAACTTGAACATGTTA	2845	False	NA	NA	False	NA	NA	NA	143424163	143424423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143424200_143424400
ES_00045543	chr5	+	958	1	FSM	ENSMUSG00000105206.2	ENSMUST00000198525.2	1251	1	1049	-756	1049	756	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATATATTGCCAAGGAGA	3878	False	NA	NA	False	NA	NA	NA	143425196	143426154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_143425200_143426200
ES_00045547	chr5	+	362	1	FSM	ENSMUSG00000045482.17	ENSMUST00000197741.2	960	1	628	-30	-184	30	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCGGCGGCTACGGCGCC	NA	False	NA	NA	False	NA	NA	NA	144705169	144705531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_144705200_144705500
ES_00045556	chr5	+	3258	1	FSM	ENSMUSG00000104682.2	ENSMUST00000197174.2	2239	1	-1273	254	-1273	-254	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTCTGGCCCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	145228306	145231564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_145228300_145231600
ES_00045558	chr5	+	2887	12	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_6	26.9241358433115	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	AATAAA	-20	NA	146168039	146239684	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ES_00045559	chr5	+	4897	10	NIC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	293	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	55.5139844465861	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	15	True	AATAAA	-19	NA	146322087	146410425	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146402659_146402830_146403607_146403875_146405024_146405390_146407029
ES_00045562	chr5	+	1678	7	FSM	ENSMUSG00000016503.19	ENSMUST00000133296.2	1678	7	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_1	53.3315103855122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACATCCGACTCTTTGCT	NA	False	NA	12	True	ATTAAA	-12	NA	146886816	146892413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
ES_00045575	chr5	+	3446	4	FSM	ENSMUSG00000029649.11	ENSMUST00000201120.2	3850	4	0	404	0	-404	multi-exon	FALSE	canonical	3	2983	junction_1	226.704408622525	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGCACTCAGCACTG	NA	False	NA	NA	False	NA	NA	NA	147797462	147809469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221
ES_00045581	chr5	+	3288	13	FSM	ENSMUSG00000056602.14	ENSMUST00000200863.2	3288	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	6.41612551830672	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTATTTTTATATGTG	NA	False	NA	9	True	ATTAAA	-15	NA	150374594	150421218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ES_00045584	chr5	+	11892	25	NNC	ENSMUSG00000041147.11	novel	864	3	NA	NA	2592	0	intron_retention	TRUE	canonical	2	4	junction_1	42.341842156692	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	3022	False	NA	12	True	AATAAA	-21	NA	150448746	150493211	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_150450577_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113_150466923_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ES_00045590	chr5	-	2105	1	FSM	ENSMUSG00000104950.2	ENSMUST00000199632.2	1946	1	0	-159	0	159	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCACTTGGGAGGCAGAG	NA	False	NA	NA	False	TTTAAA	-41	NA	3681722	3679617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_3679600_3681700
ES_00045592	chr5	-	1139	5	NNC	ENSMUSG00000040351.12	novel	2572	19	NA	NA	-30981	11523	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	33.9742549587184	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCCATTTTCTTGGAA	NA	False	NA	NA	False	ATTAAA	-7	NA	3783113	3772156	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
ES_00045594	chr5	-	3401	11	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	38	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	223.58776800174	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGATTTTCTTTGCCAA	NA	False	NA	-23	True	ATTAAA	-21	NA	4154383	4131145	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_4131184_4131349_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ES_00045595	chr5	-	366	1	FSM	ENSMUSG00000028926.16	ENSMUST00000199623.2	3419	1	1475	1578	1475	-1578	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAGCTCCCGAGTTATT	NA	False	NA	NA	False	CATAAA	-30	NA	4937437	4937071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_4937100_4937400
ES_00045596	chr5	-	2948	11	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	0	36659	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.5507763941119	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAACAAACCAAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	5609482	5550794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_5550830_5587456_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ES_00045597	chr5	-	3519	4	FSM	ENSMUSG00000046798.15	ENSMUST00000115446.8	3519	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.5841028929991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGTCTCTGTCCTTTT	NA	False	NA	-5	True	ATTAAA	-15	NA	5564825	5555110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5558455_5561070_5561123_5563161_5563224_5564764
ES_00045599	chr5	-	265	2	FSM	ENSMUSG00000040473.16	ENSMUST00000150140.3	293	2	0	28	0	-28	multi-exon	FALSE	canonical	3	7	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGCACGTAGATAGAT	NA	False	NA	NA	False	NA	NA	NA	5676095	5675749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5675928_5676008
ES_00045600	chr5	-	608	4	NNC	ENSMUSG00000040473.16	novel	2920	5	NA	NA	0	-627	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.49691252107735	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACTCAACGATATCTA	NA	False	NA	NA	False	NA	NA	NA	5714239	5697456	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_5697607_5699789_5699856_5707787_5707848_5713907
ES_00045602	chr5	-	1084	1	FSM	ENSMUSG00000104663.2	ENSMUST00000197670.2	2389	1	848	457	848	-457	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACATCAGAGACTTCACA	NA	False	NA	NA	False	NA	NA	NA	6478384	6477300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_6477300_6478400
ES_00045603	chr5	-	9076	28	NIC	ENSMUSG00000040537.18	novel	9161	30	NA	NA	-36	2	combination_of_known_splicesites	TRUE	canonical	3	7	junction_4	6.89207413418169	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCTCTCTTTCATGTTT	6025	False	NA	-1	True	AATAAA	-21	NA	8418196	8122349	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ES_00045604	chr5	-	558	3	ISM	ENSMUSG00000040537.18	ENSMUST00000115386.8	9056	31	279933	5989	2191	345	3prime_fragment	FALSE	canonical	2	8	junction_2	6.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGCAGGTTTTCCTGAG	NA	False	NA	2	True	AATAAA	-20	NA	8138049	8128340	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_8128707_8132145_8132270_8137981
ES_00045605	chr5	-	3433	16	NIC	ENSMUSG00000042508.17	novel	3498	17	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	30	junction_13	63.215469274186	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTCAAAAGTGAGAATT	NA	False	NA	59	True	ATTAAA	-39	NA	9211743	9168807	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9200375_9200493_9201797_9201919_9211613
ES_00045611	chr5	-	696	1	FSM	ENSMUSG00000059179.7	ENSMUST00000073014.7	1075	1	789	-410	789	410	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATAAAATCAACAATGA	NA	False	NA	NA	False	NA	NA	NA	16935279	16934583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_16934600_16935300
ES_00045612	chr5	-	1262	2	Genic_Genomic	ENSMUSG00000059179.7	novel	1075	1	NA	NA	0	410	multi-exon	FALSE	canonical	3	271	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATAAAATCAACAATGA	NA	False	NA	NA	False	NA	NA	NA	16936068	16934583	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_16935206_16935428
ES_00045613	chr5	-	4667	19	NNC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	0	20430	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	66.7461794347497	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGATGACATGACTCCTAAT	NA	False	NA	NA	False	NA	NA	NA	21087075	20943230	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_20943257_20963768_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00045614	chr5	-	4654	17	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	14	3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	61.9464234237942	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACTTCATAGTTTGTTT	NA	False	NA	-1	True	AATAAA	-16	NA	21087029	20963657	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_20966074_20966661_20966788_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00045615	chr5	-	796	6	FSM	ENSMUSG00000028771.14	ENSMUST00000126853.8	796	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.3923048454133	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAGGGCCCAAAAGTTT	NA	False	NA	NA	False	AAGAAA	-10	NA	21214604	21203450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439
ES_00045616	chr5	-	3942	4	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	17521	0	17521	0	3prime_fragment	FALSE	canonical	3	67	junction_3	28.4292494136272	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	21888871	21867898	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153
ES_00045617	chr5	-	226	1	FSM	ENSMUSG00000105081.2	ENSMUST00000198877.2	226	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAGCTGCCTGGCCAGCG	NA	False	NA	NA	False	NA	NA	NA	22677990	22677764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22677800_22678000
ES_00045619	chr5	-	972	10	FSM	ENSMUSG00000029012.12	ENSMUST00000142987.8	973	10	1	0	1	0	multi-exon	FALSE	canonical	3	46	junction_8	171.967051107666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCAGCGAGAACTGATAAG	NA	False	NA	NA	False	NA	NA	NA	22755372	22728548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
ES_00045620	chr5	-	560	1	FSM	ENSMUSG00000084235.3	ENSMUST00000118224.2	399	1	0	-161	0	161	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGGAATGTTGCAGGTC	NA	False	NA	64	True	NA	NA	NA	22733717	22733157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22733200_22733700
ES_00045621	chr5	-	892	1	Intergenic	novelGene_3082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGACTGCACCTACTCA	NA	False	NA	NA	False	NA	NA	NA	23572819	23571927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_23571900_23572800
ES_00045622	chr5	-	860	2	Intergenic	novelGene_3083	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	94	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGACTGCACCTACTCA	NA	False	NA	NA	False	NA	NA	NA	23572819	23571927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_23572688_23572719
ES_00045623	chr5	-	340	1	FSM	ENSMUSG00000062604.12	ENSMUST00000198719.2	2790	1	28	2422	28	-2024	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGTGTAATGTTAGAGAG	NA	False	NA	NA	False	NA	NA	NA	23754340	23754000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_23754000_23754300
ES_00045624	chr5	-	808	1	FSM	ENSMUSG00000105565.2	ENSMUST00000196851.2	808	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTATCTTTATTTTGCAA	NA	False	NA	NA	False	AATAAA	-14	NA	23880544	23879736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_23879700_23880500
ES_00045625	chr5	-	3576	3	NNC	ENSMUSG00000105987.5	novel	474	3	NA	NA	360	167	intron_retention	FALSE	non_canonical	0	0	junction_1	9	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGAGAAAACTGACAAAGG	5621	False	NA	NA	False	TATAAA	-34	NA	23917300	23903126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_23905471_23915361_23915407_23916113
ES_00045626	chr5	-	444	4	NNC	ENSMUSG00000028998.7	novel	1125	3	NA	NA	0	34580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1816.30877208573	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCTAAGGTAGAATGAAG	NA	False	NA	NA	False	NA	NA	NA	24049159	24009361	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_24009389_24044649_24044827_24046707_24046757_24048968
ES_00045627	chr5	-	347	1	FSM	ENSMUSG00000118627.2	ENSMUST00000126393.2	544	1	-7	204	-7	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCTTCAAACTACGCATG	NA	False	NA	NA	False	NA	NA	NA	24036628	24036281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24036300_24036600
ES_00045628	chr5	-	301	1	FSM	ENSMUSG00000099891.2	ENSMUST00000190879.2	398	1	-88	185	-88	-185	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCTGTACCAGAGTGCCG	8755	False	NA	NA	False	AAGAAA	-21	NA	24414810	24414509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24414500_24414800
ES_00045629	chr5	-	1116	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	0	192	at_least_one_novel_splicesite	FALSE	non_canonical	2	111	junction_3	23.9707121571787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGATATGGTGGTGGG	NA	False	NA	-8	True	CATAAA	-19	NA	24628528	24624181	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_24624461_24624597_24624679_24624780_24624841_24625255_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ES_00045630	chr5	-	828	5	FSM	ENSMUSG00000028959.15	ENSMUST00000132109.8	828	5	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	149.855763986575	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24647213	24646036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24646260_24646333_24646449_24646525_24646822_24646921_24647082_24647179
ES_00045632	chr5	-	3033	2	FSM	ENSMUSG00000067724.6	ENSMUST00000088311.6	3475	2	442	0	442	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCCTCTCACTGGT	NA	False	NA	NA	False	AATAAA	-15	NA	24731758	24707754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24710138_24731108
ES_00045633	chr5	-	1632	12	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	3080	0	6	0	3prime_fragment	FALSE	canonical	3	153	junction_8	20.0610638050861	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	NA	False	NA	0	True	ATTAAA	-17	NA	24803930	24797619	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589
ES_00045634	chr5	-	218	2	FSM	ENSMUSG00000038135.5	ENSMUST00000123386.2	221	2	0	3	0	-3	multi-exon	FALSE	canonical	1	2	junction_1	0	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGAGTGCTGGCGGGCCTCG	NA	False	NA	NA	False	AATAAA	-12	NA	24956322	24956003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24956188_24956288
ES_00045635	chr5	-	759	4	FSM	ENSMUSG00000038135.5	ENSMUST00000047119.5	768	4	0	9	0	-9	multi-exon	FALSE	canonical	2	2	junction_3	0.471404520791032	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGCGGAGTGCTGGCGG	NA	False	NA	NA	False	AATAAA	-6	NA	24963006	24956009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_24956188_24959131_24959278_24961034_24961284_24962820
ES_00045636	chr5	-	1401	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	0	41809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.359743655507	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCCCTGTCTGAGGT	NA	False	NA	NA	False	NA	NA	NA	25047622	24966011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_24966046_25008237_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ES_00045637	chr5	-	1597	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	-208	41809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.359743655507	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCCCTGTCTGAGGT	NA	False	NA	NA	False	NA	NA	NA	25047830	24966011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_24966046_25008249_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ES_00045639	chr5	-	17223	60	NIC	ENSMUSG00000038056.16	novel	14967	59	NA	NA	-49	205	combination_of_known_splicesites	FALSE	canonical	2	10	junction_48	13.5494243536765	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTGTTTAAACTCTGT	9367	False	NA	NA	False	ATTAAA	-19	NA	25703830	25476590	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25499554_25499720_25500395_25500609_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436_25513549_25514597_25516418_25518253_25518547_25518977_25520874_25523989_25524173_25525304_25525379_25528649_25528865_25529086_25529220_25534020_25534141_25534238_25534272_25534444_25534574_25535793_25535899_25543410_25543580_25549905_25550037_25552358_25552479_25554809_25554939_25556049_25556263_25557224_25557291_25558296_25558407_25559332_25559498_25559636_25559819_25564309_25564415_25564589_25564692_25568443_25568561_25571074_25571195_25577763_25578468_25579487_25579566_25580339_25580454_25580873_25581026_25582110_25582281_25590642_25590758_25592921_25593094_25600386_25600550_25609276_25609387_25610368_25610518_25614131_25614330_25619882_25620022_25648817_25648907_25703387
ES_00045641	chr5	-	266	2	Antisense	novelGene_ENSMUSG00000105422.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCTAAAGCAGAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	26280483	26162676	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_26162897_26280437
ES_00045644	chr5	-	1689	11	NNC	ENSMUSG00000010721.16	novel	4926	17	NA	NA	-15	-15729	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.9063917613102	124	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATTTGAATTTCCACAGT	NA	False	NA	NA	False	NA	NA	NA	29583343	29478803	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_29479297_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29569918_29570205_29583124
ES_00045645	chr5	-	2203	3	FSM	ENSMUSG00000001566.10	ENSMUST00000165512.4	2245	3	0	42	0	-42	multi-exon	FALSE	canonical	2	3	junction_1	0.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGATTATCAGCAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	29683468	29678073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_29679230_29679753_29679915_29682582
ES_00045648	chr5	-	1069	1	FSM	ENSMUSG00000025745.13	ENSMUST00000196156.2	1069	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30359988	30358919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_30358900_30360000
ES_00045651	chr5	-	1851	9	FSM	ENSMUSG00000029151.15	ENSMUST00000202740.4	1989	9	136	2	117	-2	multi-exon	FALSE	canonical	0	0	junction_7	11.1551557586616	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGCAGTCCAATTCC	NA	False	NA	-2	True	AATAAA	-17	NA	31265445	31243451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31251827_31251901_31265401
ES_00045653	chr5	-	5225	19	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	4817	-516	-479	0	3prime_fragment	FALSE	canonical	3	165	junction_17	141.985349618096	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31332644	31313348	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575
ES_00045654	chr5	-	4894	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_18	143.423797894454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31337193	31313348	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31336590
ES_00045656	chr5	-	654	6	FSM	ENSMUSG00000029145.13	ENSMUST00000200983.4	654	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	246.003739808971	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCACCTGCCTCAGTACA	NA	False	NA	NA	False	NA	NA	NA	31350483	31348543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31348585_31348708_31348792_31348884_31349092_31349496_31349629_31349925_31349970_31350336
ES_00045658	chr5	-	2129	2	FSM	ENSMUSG00000029147.12	ENSMUST00000202402.2	1695	2	0	-434	0	0	multi-exon	FALSE	canonical	3	657	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31362427	31360011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31360629_31360915
ES_00045659	chr5	-	2194	16	ISM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	29583	1	-280	-1	intron_retention	FALSE	canonical	3	55	junction_9	16.0410584300275	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTGCATTCTTTGCTCA	NA	False	NA	0	True	ATTAAA	-19	NA	31418868	31410621	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270
ES_00045662	chr5	-	1440	8	NIC	ENSMUSG00000038552.15	novel	1375	8	NA	NA	-5	-3	intron_retention	FALSE	canonical	0	0	junction_7	7.99744857273052	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAACTGACTGGTTCCTG	NA	False	NA	NA	False	AATAAA	-14	NA	31453429	31450232	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876_31453007_31453401
ES_00045664	chr5	-	4386	1	FSM	ENSMUSG00000107277.2	ENSMUST00000202073.2	4786	1	-10	410	-10	-410	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGAGCCATCTCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	32769159	32764773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_32764800_32769200
ES_00045665	chr5	-	676	2	FSM	ENSMUSG00000023452.20	ENSMUST00000202641.2	728	2	65	-13	65	0	multi-exon	FALSE	canonical	3	32	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGGTAAAGGGCGTAAC	9520	False	NA	NA	False	NA	NA	NA	32898133	32896207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_32896718_32897967
ES_00045666	chr5	-	6966	1	FSM	ENSMUSG00000105429.2	ENSMUST00000198236.2	1062	1	-5987	83	-5987	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGTGTCTGTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	32964296	32957330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_32957300_32964300
ES_00045667	chr5	-	200	2	Antisense	novelGene_ENSMUSG00000037426.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAAAGTCTGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	33137764	33077019	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_33077170_33137714
ES_00045668	chr5	-	877	2	FSM	ENSMUSG00000037379.8	ENSMUST00000201175.2	1130	2	237	16	226	-16	multi-exon	FALSE	canonical	2	5	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTCGTGTTCCTGAAA	NA	False	NA	NA	False	NA	NA	NA	33373067	33371294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33371997_33372892
ES_00045669	chr5	-	2091	8	FSM	ENSMUSG00000037373.13	ENSMUST00000201575.4	2091	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	292.512270804882	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAAAAATCCCAGA	NA	False	NA	-45	True	NA	NA	NA	33432336	33405097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33432122
ES_00045670	chr5	-	2351	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	0	-5	0	-4	multi-exon	FALSE	canonical	3	127	junction_2	24.5089269450949	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTAGATTCTTTTTG	NA	False	NA	-7	True	ATTAAA	-19	NA	33786966	33757694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
ES_00045672	chr5	-	2105	7	FSM	ENSMUSG00000005299.7	ENSMUST00000149886.2	3056	7	951	0	951	0	multi-exon	FALSE	canonical	3	350	junction_6	47.3075046900595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGATAGAAGAGAAA	NA	False	NA	9	True	NA	NA	NA	33909955	33899877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33899957_33900985_33901125_33902359_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835
ES_00045673	chr5	-	7092	9	Fusion	ENSMUSG00000086291.2_ENSMUSG00000037224.16	novel	712	4	NA	NA	-62	3	intron_retention	FALSE	canonical	2	11	junction_3	7.31009575860672	248	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTTTGATTATTCTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	34445855	34369150	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_34371410_34371553_34375210_34382295_34382398_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
ES_00045674	chr5	-	1023	2	Intergenic	novelGene_3108	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTTTCAAATGAACAT	7287	False	NA	NA	False	NA	NA	NA	34493546	34488952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_34489287_34492857
ES_00045675	chr5	-	230	2	Intergenic	novelGene_3109	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCAGCAAGCTCCATGG	4211	False	NA	NA	False	NA	NA	NA	34521951	34520682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_34520724_34521762
ES_00045676	chr5	-	231	2	Intergenic	novelGene_3110	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCAGCAAGCTCCATGG	4211	False	NA	NA	False	NA	NA	NA	34521951	34520682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_34520724_34521761
ES_00045679	chr5	-	1880	14	NNC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	0	48689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.773365504519	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34794484	34742296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34742324_34790990_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ES_00045680	chr5	-	1757	14	NNC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	0	48689	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	132.623594248834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34794533	34742296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34742324_34790990_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
ES_00045681	chr5	-	2703	19	NNC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	27	53583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.670356624271	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34817465	34742296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34742325_34795879_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ES_00045687	chr5	-	808	1	FSM	ENSMUSG00000106928.2	ENSMUST00000201742.2	2705	1	1826	71	1826	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTTGACTTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	35709482	35708674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35708700_35709500
ES_00045688	chr5	-	3673	11	NNC	ENSMUSG00000029097.12	novel	3790	11	NA	NA	64	-5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	21.9474372080204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCCAATTTAATAGAAATA	7709	False	NA	NA	False	TATAAA	-16	NA	35732331	35713551	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730238_35731423_35731539_35731902
ES_00045689	chr5	-	3414	12	FSM	ENSMUSG00000036553.17	ENSMUST00000129664.8	3411	12	0	-3	0	0	multi-exon	FALSE	canonical	2	4	junction_9	27.3205641072891	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATCTTCTAGGTGTG	NA	False	NA	-5	True	AGTAAA	-15	NA	35873595	35854523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871456_35871603_35872369_35872447_35873452
ES_00045690	chr5	-	4729	14	NIC	ENSMUSG00000029192.18	novel	4582	14	NA	NA	-63	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_13	28.5661279952158	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTGTGTACTTTGGT	NA	False	NA	0	True	AATAAA	-22	NA	36750683	36647947	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36750501
ES_00045692	chr5	-	910	5	FSM	ENSMUSG00000029190.20	ENSMUST00000140063.5	1764	5	0	854	0	-854	multi-exon	FALSE	canonical	2	71	junction_1	2.06155281280883	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGTATTGTTAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	36853305	36776062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36776169_36777007_36777075_36787000_36787136_36830091_36830587_36853198
ES_00045693	chr5	-	1157	8	FSM	ENSMUSG00000029122.12	ENSMUST00000149890.2	1692	8	535	0	535	0	multi-exon	FALSE	canonical	2	5	junction_1	1.82946406783796	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCGAAGCTGGCGATGGA	NA	False	NA	NA	False	NA	NA	NA	37469173	37457782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_37457845_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875
ES_00045694	chr5	-	1181	8	FSM	ENSMUSG00000029122.12	ENSMUST00000133376.2	2228	8	3	1044	3	-1044	multi-exon	FALSE	canonical	3	7	junction_2	2.0995626366713	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACACAGGGCCCATGGAGG	NA	False	NA	NA	False	NA	NA	NA	37494219	37477578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
ES_00045696	chr5	-	2721	7	FSM	ENSMUSG00000029127.16	ENSMUST00000126267.8	2721	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	14.1391890385081	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATATTTTGTAAATT	NA	False	NA	NA	False	AATAAA	-22	NA	38377757	38357589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38370651_38371728_38373790_38373958_38377666
ES_00045697	chr5	-	1674	7	NIC	ENSMUSG00000029127.16	novel	2978	8	NA	NA	11	-4	combination_of_known_junctions	TRUE	canonical	2	6	junction_5	13.6961065027012	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATAATGTTTTATATTTT	NA	False	NA	NA	False	AATAAA	-15	NA	38377746	38357596	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38373790_38373958_38377666
ES_00045699	chr5	-	1546	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	4	134	4	-134	multi-exon	FALSE	canonical	3	8	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAGACCTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	39801973	39771415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_39772748_39801759
ES_00045701	chr5	-	1363	1	FSM	ENSMUSG00000104728.2	ENSMUST00000196543.2	1363	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATGACTGATACAGGC	NA	False	NA	NA	False	AATAAA	-12	NA	43911613	43910250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43910200_43911600
ES_00045703	chr5	-	717	1	FSM	ENSMUSG00000104701.2	ENSMUST00000199304.2	1039	1	335	-13	335	13	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAATGCATCTCTGTCA	NA	False	NA	NA	False	AATAAA	-32	NA	43965750	43965033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43965000_43965800
ES_00045704	chr5	-	1228	3	FSM	ENSMUSG00000048373.9	ENSMUST00000199894.2	1228	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTTTCCTTCTGATAC	NA	False	NA	NA	False	AATAAA	-23	NA	44139121	44136199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44137311_44137985_44138036_44139054
ES_00045705	chr5	-	3806	28	FSM	ENSMUSG00000029086.16	ENSMUST00000074113.13	3966	28	160	0	-113	0	multi-exon	FALSE	canonical	2	5	junction_24	9.32068513939636	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTGTTTGGTCCTTAA	NA	False	NA	NA	False	AATAAA	-18	NA	44259136	44150961	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44215967_44215995_44220467_44220527_44251736_44252111_44258989
ES_00045710	chr5	-	755	1	FSM	ENSMUSG00000104923.2	ENSMUST00000198713.2	637	1	38	-156	38	156	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTAAAAGACAGATTTTG	NA	False	NA	NA	False	AGTAAA	-13	NA	44563897	44563142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44563100_44563900
ES_00045711	chr5	-	298	1	FSM	ENSMUSG00000106603.2	ENSMUST00000196551.2	2594	1	1234	1062	1234	-1062	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTAATGGTTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	44909865	44909567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44909600_44909900
ES_00045712	chr5	-	530	5	FSM	ENSMUSG00000015806.13	ENSMUST00000154962.8	530	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	474.800155328534	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGGCAGGGAAGAACAGT	NA	False	NA	NA	False	NA	NA	NA	45607496	45596684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45596736_45600778_45600920_45601988_45602086_45604796_45604890_45607348
ES_00045714	chr5	-	10418	8	FSM	ENSMUSG00000015882.19	ENSMUST00000238522.2	10477	8	59	0	-43	0	multi-exon	FALSE	canonical	3	6	junction_1	27.9175169938525	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGATGTTTTTCAAAGT	NA	False	NA	-4	True	AATAAA	-21	NA	46014898	45854522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45859340_45880315_45885085_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ES_00045718	chr5	-	5187	11	FSM	ENSMUSG00000029173.13	ENSMUST00000150709.8	5185	11	1	-3	1	3	multi-exon	FALSE	canonical	2	6	junction_9	24.1412510032103	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCTTCTTGCACTCTT	NA	False	NA	27	True	AATAAA	-44	NA	52827049	52797425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826307_52826396_52826916
ES_00045719	chr5	-	3665	8	FSM	ENSMUSG00000029173.13	ENSMUST00000126574.3	3665	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	29.9897941823888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCCCAGCACTTAATTA	NA	False	NA	-3	True	AATAAA	-15	NA	52823342	52798517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52821509_52821664_52822577_52822737_52823329
ES_00045721	chr5	-	7306	33	FSM	ENSMUSG00000037999.14	ENSMUST00000076623.8	7306	33	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_29	4.00183063578408	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTCTTGTGTCTCTTT	NA	False	NA	3	True	ATTAAA	-24	NA	62923463	62759787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_62762000_62763417_62763553_62769046_62769111_62771336_62771373_62772346_62772430_62779181_62779310_62787475_62787605_62793294_62793413_62796304_62796380_62798670_62798740_62800137_62800286_62803525_62803632_62807031_62807245_62811388_62811553_62826131_62826196_62826369_62826569_62827222_62827326_62828278_62828424_62833294_62833430_62833854_62834030_62834444_62834628_62835287_62835374_62840697_62840898_62842903_62843020_62855583_62855763_62863950_62864072_62872075_62872146_62887863_62888218_62890312_62890405_62891242_62891320_62892330_62892390_62906118_62907160_62923236
ES_00045722	chr5	-	2872	4	FSM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	1	6	1	-6	multi-exon	FALSE	canonical	3	10	junction_2	4.89897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTTGTTGTTTTGTT	NA	False	NA	NA	False	TTTAAA	-12	NA	64768042	64751205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_64753667_64759324_64759493_64767442_64767499_64767855
ES_00045723	chr5	-	291	1	FSM	ENSMUSG00000097640.8	ENSMUST00000192228.2	738	1	443	4	443	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAACATTCTCAGGCCTG	NA	False	NA	NA	False	ATTAAA	-10	NA	64865848	64865557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_64865600_64865800
ES_00045727	chr5	-	7003	34	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	7	74193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	144.05641176439	410	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAAATGTACCTACCA	2648	False	NA	NA	False	NA	NA	NA	65855609	65688870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65688903_65765119_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
ES_00045728	chr5	-	4088	1	FSM	ENSMUSG00000105601.2	ENSMUST00000199296.2	4193	1	-109	214	-109	-214	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGAGAAACCCTGTCT	5000	False	NA	NA	False	NA	NA	NA	65693212	65689124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65689100_65693200
ES_00045729	chr5	-	6217	1	FSM	ENSMUSG00000029202.13	ENSMUST00000201673.2	6051	1	-166	0	-166	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGTTCTCCAATTTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	65769282	65763065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65763100_65769300
ES_00045733	chr5	-	703	3	FSM	ENSMUSG00000070780.12	ENSMUST00000200852.4	703	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	15	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGATGAAGAAGCGCGG	2649	False	NA	NA	False	NA	NA	NA	66211895	66184127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_66184633_66203429_66203557_66211824
ES_00045734	chr5	-	207	1	Intergenic	novelGene_3132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATGGATTTAAA	NA	False	NA	NA	False	NA	NA	NA	66366419	66366212	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_66366200_66366400
ES_00045739	chr5	-	7934	5	FSM	ENSMUSG00000092060.5	ENSMUST00000169190.5	7935	5	0	1	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.6710588883042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTGACTTGATTTTTT	NA	False	NA	-6	True	AATAAA	-19	NA	67585142	67549490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_67555794_67557403_67557645_67562773_67562863_67574798_67575366_67584408
ES_00045740	chr5	-	475	1	FSM	ENSMUSG00000107257.2	ENSMUST00000202561.2	481	1	39	-33	39	33	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAGAGAGAGAGAGA	NA	False	NA	NA	False	AATAAA	-15	NA	68146311	68145836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_68145800_68146300
ES_00045742	chr5	-	289	1	FSM	ENSMUSG00000072889.10	ENSMUST00000198977.2	4172	1	3934	-51	3723	51	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAAGATTCTCCTAAAA	NA	False	NA	NA	False	AAAAAG	-34	NA	72713032	72712743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_72712700_72713000
ES_00045744	chr5	-	672	1	FSM	ENSMUSG00000052154.5	ENSMUST00000201161.2	2356	1	0	1684	0	25	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGGGGCTGGAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	73072285	73071613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_73071600_73072300
ES_00045745	chr5	-	216	2	Antisense	novelGene_ENSMUSG00000036087.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	227	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAATTATATTAACAGAAG	NA	False	NA	NA	False	NA	NA	NA	73108645	73078123	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_73078287_73108592
ES_00045746	chr5	-	3910	13	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	16351	207	0	128	3prime_fragment	FALSE	canonical	3	35	junction_1	4.08928138212843	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTGTGGTATTTT	475	False	NA	-3	True	AATAAA	-15	NA	73212167	73177536	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058
ES_00045750	chr5	-	2903	6	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-12697	-853	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	22.3928560036454	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTATATTACAAAGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	73817830	73790944	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744
ES_00045751	chr5	-	4767	10	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	0	129	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	92.6008292632788	267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTAGTTTTTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	74229092	74159257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307_74226389_74228910
ES_00045754	chr5	-	7337	23	NIC	ENSMUSG00000029238.12	novel	7478	23	NA	NA	130	-8	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	11.9323160069308	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTTTTGCATATTT	NA	False	NA	-5	True	ATTAAA	-15	NA	76452265	76360031	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_76364726_76374779_76375075_76377204_76377408_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452214
ES_00045762	chr5	-	2106	6	NIC	ENSMUSG00000036285.11	novel	2288	7	NA	NA	2	-23	combination_of_known_splicesites	FALSE	canonical	3	19	junction_3	53.9013914477168	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATAAAAATCTTTCTT	NA	False	NA	46	True	NA	NA	NA	77457904	77442051	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_77442404_77444932_77445051_77447504_77447622_77454120_77454324_77455399_77455565_77456753
ES_00045763	chr5	-	232	1	Genic_Genomic	ENSMUSG00000036285.11	novel	NA	NA	NA	NA	767	62	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGGGGGGGGAGTG	NA	False	NA	NA	False	NA	NA	NA	77451395	77451163	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_77451200_77451400
ES_00045764	chr5	-	3039	18	NIC	ENSMUSG00000029253.13	novel	3192	19	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_16	34.7976851634353	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATCTTGTCTGTGGTG	NA	False	NA	-6	True	ATTAAA	-17	NA	86213381	86159882	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86209862_86209907_86213186
ES_00045766	chr5	-	8191	31	ISM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	7107	-895	6815	895	3prime_fragment	FALSE	canonical	3	104	junction_13	11.4097911169895	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCATTTGTGTGGTTT	NA	False	NA	-7	True	ATTAAA	-11	NA	86313555	86256250	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555
ES_00045767	chr5	-	3671	29	FSM	ENSMUSG00000035898.14	ENSMUST00000147734.2	4177	29	0	506	0	-506	multi-exon	FALSE	canonical	3	104	junction_9	11.671251528645	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTTATTTTTAAAAATG	7152	False	NA	NA	False	NA	NA	NA	86320598	86269205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555_86312651_86318413_86318477_86320526
ES_00045768	chr5	-	2684	10	FSM	ENSMUSG00000061259.12	ENSMUST00000031175.12	2716	10	0	32	0	-32	multi-exon	TRUE	canonical	0	0	junction_6	1.47405546238018	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTCTTTCAAATAAAC	NA	False	NA	NA	False	AATATA	-19	NA	86521279	86450107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_86451632_86454125_86454269_86457122_86457383_86474266_86474445_86475476_86475516_86478929_86479085_86485085_86485154_86486639_86486759_86487338_86487461_86521203
ES_00045769	chr5	-	949	1	FSM	ENSMUSG00000082389.3	ENSMUST00000122035.3	1390	1	353	88	353	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	3498	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGCAGGTGGGGACAAGC	NA	False	NA	NA	False	NA	NA	NA	88986905	88985956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_88986000_88986900
ES_00045770	chr5	-	5205	1	Intergenic	novelGene_3156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTTGGCTACATTCTTT	NA	False	NA	NA	False	NA	NA	NA	89356952	89351747	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_89351700_89357000
ES_00045771	chr5	-	4538	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_1	0	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCTTTTCTCTCGCCAC	NA	False	NA	NA	False	NA	NA	NA	89356954	89351736	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_89351965_89352644
ES_00045772	chr5	-	1262	6	NIC	ENSMUSG00000035505.15	novel	1333	6	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_5	93.3016612928194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371785	90362582	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370195_90371474
ES_00045777	chr5	-	3970	13	FSM	ENSMUSG00000029403.15	ENSMUST00000069937.11	3976	13	0	6	0	-6	multi-exon	FALSE	canonical	0	0	junction_1	2.51108652888656	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTTTTTTTCCTCTTCCT	NA	False	NA	NA	False	AATAAA	-11	NA	92190900	92153938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92155994_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190657
ES_00045780	chr5	-	201	2	Intergenic	novelGene_3165	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTATAAACTGTTAAAGCG	4009	False	NA	NA	False	NA	NA	NA	92259655	92234728	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_92234821_92259546
ES_00045781	chr5	-	493	1	FSM	ENSMUSG00000029426.9	ENSMUST00000201253.2	2033	1	1149	391	-47	-391	mono-exon	FALSE	NA	NA	NA	NA	NA	438	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGCAGGCTAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	92653543	92653050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92653000_92653500
ES_00045783	chr5	-	1068	4	FSM	ENSMUSG00000063015.13	ENSMUST00000144514.3	1068	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	179.979628476855	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTATTGTAAGACACAT	NA	False	NA	NA	False	AGTAAA	-2	NA	93354287	93337422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_93337552_93350163_93350322_93353300_93353567_93353772
ES_00045784	chr5	-	8569	12	FSM	ENSMUSG00000034724.19	ENSMUST00000113005.9	3170	12	5	-5404	5	0	multi-exon	TRUE	canonical	3	6	junction_11	10.9800721068249	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTTGGGTTTTGAT	NA	False	NA	-1	True	AATAAA	-20	NA	96309609	96218191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869_96281992_96309550
ES_00045785	chr5	-	3675	6	NIC	ENSMUSG00000055725.12	novel	1375	7	NA	NA	0	2663	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	71.4047617459788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGCCTGCCTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	97259455	97241127	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_97243920_97245337_97245429_97247404_97247540_97251218_97251375_97256024_97256188_97259117
ES_00045787	chr5	-	3127	6	ISM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	-22	7	4	-1	intron_retention	FALSE	canonical	3	934	junction_3	96.8949947107693	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTTCCTGCGTCAGG	NA	False	NA	-21	True	AATAAA	-14	NA	100186750	100182586	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671
ES_00045789	chr5	-	4235	28	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-32	30488	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	179.775030881363	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATGGCCGGGCCAACCT	8076	False	NA	NA	False	AATAAA	-2	NA	100564125	100479019	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_100479034_100509507_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ES_00045794	chr5	-	3486	3	FSM	ENSMUSG00000097772.8	ENSMUST00000180779.2	3486	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_2	2.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAGAGAAGGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	100577375	100571510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100574664_100576955_100577098_100577184
ES_00045801	chr5	-	14336	68	NIC	ENSMUSG00000043940.16	novel	14274	67	NA	NA	-47	3	combination_of_known_junctions	TRUE	canonical	2	3	junction_31	16.3315367039237	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTGTTTTTAAATT	NA	False	NA	NA	False	AATAAA	-25	NA	102217834	101980818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105_101999265_102000088_102000244_102000373_102000522_102003254_102003468_102003670_102003763_102006330_102006485_102008283_102008391_102009229_102009348_102011642_102011763_102011942_102011998_102014062_102014144_102015359_102015446_102015898_102016020_102017826_102017976_102020697_102020862_102023706_102023876_102025871_102025926_102030288_102030517_102030779_102030858_102031908_102032067_102032996_102033180_102034826_102034937_102035952_102036183_102037051_102037213_102038615_102038716_102042776_102043011_102044264_102044445_102046292_102046428_102047924_102048116_102049636_102049855_102050305_102050427_102053969_102054065_102055314_102055477_102055551_102055626_102058792_102058946_102059903_102060095_102061038_102061151_102063204_102063366_102065265_102065498_102067261_102067444_102070279_102070499_102070620_102070722_102071721_102071954_102074289_102074403_102077746_102077962_102078693_102078872_102083855_102083940_102085147_102085606_102089305_102089500_102090885_102090988_102091746_102092215_102096673_102096841_102099090_102099278_102100846_102101040_102105249_102105412_102108981_102109092_102116734_102116859_102129244_102129456_102157654_102157754_102189520_102189610_102217461
ES_00045802	chr5	-	2713	8	FSM	ENSMUSG00000043940.16	ENSMUST00000173955.2	2713	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	6.29544701043734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTTAATTTGTTCTAC	NA	False	NA	NA	False	AATATA	-21	NA	101999379	101982802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105
ES_00045804	chr5	-	252	1	FSM	ENSMUSG00000105019.2	ENSMUST00000197729.2	328	1	50	26	50	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104028051	104027799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_104027800_104028100
ES_00045805	chr5	-	2133	2	Intergenic	novelGene_3188	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	92	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTATGTGTTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	104732486	104730269	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_104730306_104730389
ES_00045806	chr5	-	2951	2	Intergenic	novelGene_3191	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTTTGTCTCTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	104792844	104789259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_104790445_104791078
ES_00045808	chr5	-	1987	2	Intergenic	novelGene_3197	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGTAAAGGCTTTGCCACA	NA	False	NA	NA	False	NA	NA	NA	104900355	104898032	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_104898108_104898443
ES_00045809	chr5	-	1265	7	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	10	10190	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	86.7437157506077	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGAAATTTTCTGCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	105007649	104950844	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_104951336_104952168_104952309_104953146_104953426_104963251_104963302_104964564_104964626_104964862_104964990_105007532
ES_00045810	chr5	-	551	4	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	39	-823	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_3	77.67596510862	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCACTGTGGTAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	105007897	104963031	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007804
ES_00045811	chr5	-	6024	9	NNC	ENSMUSG00000049606.17	novel	5569	7	NA	NA	0	1	intron_retention	FALSE	canonical	1	1	junction_7	47.5631159618459	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTCTAATGTGAAACATT	NA	False	NA	-13	True	AATAAA	-20	NA	106843878	106764603	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106827545_106827610_106829769_106829880_106838595_106838744_106843663
ES_00045812	chr5	-	4913	4	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	23	0	intron_retention	FALSE	canonical	3	15	junction_3	45.1072795307661	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGCCTCTAATGTGAAAC	NA	False	NA	-16	True	AATAAA	-17	NA	106844493	106764606	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_106766295_106767405_106767509_106783475_106786502_106844397
ES_00045816	chr5	-	1163	3	FSM	ENSMUSG00000049606.17	ENSMUST00000127572.2	1163	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCCAGAGATGGGACGC	NA	False	NA	NA	False	NA	NA	NA	106844412	106838456	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106838744_106843002_106843566_106844099
ES_00045817	chr5	-	2046	19	FSM	ENSMUSG00000029276.14	ENSMUST00000124546.8	2042	19	-2	-2	0	0	multi-exon	FALSE	canonical	2	35	junction_18	75.5102805526228	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCATTATACTTTATAC	NA	False	NA	NA	False	AATAAA	-17	NA	107745412	107696887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745254
ES_00045818	chr5	-	1192	1	FSM	ENSMUSG00000106288.2	ENSMUST00000198605.2	1346	1	158	-4	158	4	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGGGTTACAGTTCAT	NA	False	NA	NA	False	AATAAA	-27	NA	107955415	107954223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_107954200_107955400
ES_00045819	chr5	-	492	3	FSM	ENSMUSG00000011831.17	ENSMUST00000124590.8	674	3	0	182	0	-182	multi-exon	FALSE	canonical	3	169	junction_2	19	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGTGGGCAAGTGTGCT	8196	False	NA	NA	False	NA	NA	NA	107964675	107963208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_107963575_107963667_107963758_107964639
ES_00045820	chr5	-	3887	5	NNC	ENSMUSG00000063406.12	novel	3800	4	NA	NA	-113	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.214622294571	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	0	True	AATAAA	-31	NA	108280599	108269492	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108271811_108271836_108272626_108273766_108273951_108277883_108277982_108280101
ES_00045822	chr5	-	337	5	NNC	ENSMUSG00000050856.17	novel	371	4	NA	NA	0	37470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2013.68902763063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGAATGAAAGGTTTTC	5553	False	NA	NA	False	NA	NA	NA	108582263	108543639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108543666_108581118_108581204_108581596_108581696_108581891_108581947_108582191
ES_00045824	chr5	-	4307	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	73.3449033817007	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCTTGTAAAGCACTTC	NA	False	NA	-25	True	ATTAAA	-26	NA	108777603	108717276	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ES_00045825	chr5	-	5792	27	FSM	ENSMUSG00000062234.15	ENSMUST00000135225.8	4310	27	0	-1482	0	1479	multi-exon	FALSE	canonical	3	15	junction_23	73.3495017589351	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATGGGAGTTGTC	NA	False	NA	NA	False	AAGAAA	-43	NA	108777605	108715797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ES_00045829	chr5	-	5337	21	FSM	ENSMUSG00000004815.13	ENSMUST00000132179.8	5345	21	8	0	8	0	multi-exon	FALSE	canonical	3	9	junction_18	12.1674771419551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACCCTTCACTGCAAA	NA	False	NA	NA	False	AATAAA	-11	NA	108808669	108794558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108796678_108797010_108797164_108797243_108797356_108797452_108797600_108797690_108798246_108798355_108798835_108800259_108800376_108801046_108801086_108801501_108801653_108801949_108802012_108802221_108802277_108802409_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709_108803836_108803911_108803952_108804289_108804390_108806071_108806152_108808308
ES_00045830	chr5	-	284	5	FSM	ENSMUSG00000055385.13	ENSMUST00000068946.8	288	5	0	4	0	-4	multi-exon	FALSE	canonical	1	1	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCCCCATTGGGGCAA	NA	False	NA	NA	False	NA	NA	NA	108897314	108879530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108879604_108893526_108893591_108895280_108895324_108897108_108897161_108897262
ES_00045831	chr5	-	635	4	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	886	1632	multi-exon	FALSE	canonical	3	14	junction_1	15.542057635833	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCAGTAAGGCTCTCGGG	NA	False	NA	NA	False	AATAAA	-30	NA	109701136	109698125	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_109698443_109699328_109699371_109700490_109700560_109700929
ES_00045832	chr5	-	1225	6	NIC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	1124	10	combination_of_known_splicesites	FALSE	canonical	1	48	junction_5	223.981606387667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTAATTCCTGACCAG	NA	False	NA	3	True	NA	NA	NA	109705678	109702564	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_109702937_109703138_109703224_109703884_109704048_109704285_109704429_109704866_109705034_109705383
ES_00045833	chr5	-	1218	8	NNC	ENSMUSG00000033467.13	novel	1323	8	NA	NA	-124	10	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_7	231.923280770313	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTAATTCCTGACCAG	NA	False	NA	3	True	NA	NA	NA	109706983	109702564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706913
ES_00045834	chr5	-	1724	8	NNC	ENSMUSG00000033467.13	novel	1323	8	NA	NA	-128	10	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_3	239.510214515254	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTAATTCCTGACCAG	NA	False	NA	3	True	NA	NA	NA	109706987	109702564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703625_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
ES_00045836	chr5	-	294	1	FSM	ENSMUSG00000049477.6	ENSMUST00000061226.6	363	1	242	-173	242	173	mono-exon	FALSE	NA	NA	NA	NA	NA	4055	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGTAGGACTCTGTGAT	1898	False	NA	NA	False	NA	NA	NA	109905511	109905217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_109905200_109905500
ES_00045837	chr5	-	384	3	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	25	-15584	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_2	53.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTTCTTTAAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	109944139	109932856	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109933023_109933207_109933335_109944048
ES_00045838	chr5	-	3745	3	FSM	ENSMUSG00000109771.2	ENSMUST00000209865.2	3457	3	-281	-7	-281	7	multi-exon	FALSE	canonical	3	51	junction_1	5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCCTTTTTCTTCCTGC	1854	False	NA	4	True	AATAAA	-21	NA	110229035	110223994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110227247_110228349_110228411_110228603
ES_00045839	chr5	-	1172	2	Genic_Genomic	ENSMUSG00000081865.2	novel	828	1	NA	NA	0	35214	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTTTCCTAGGAGGGAC	3140	False	NA	NA	False	NA	NA	NA	110266715	110230673	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_110230698_110265567
ES_00045840	chr5	-	930	4	FSM	ENSMUSG00000033434.16	ENSMUST00000138507.8	928	4	0	-2	0	-1	multi-exon	FALSE	canonical	3	206	junction_1	9.84321537348893	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCTGGTTTTGTATAGG	NA	False	NA	-5	True	ATTAAA	-27	NA	110253201	110251841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110252035_110252133_110252525_110252755_110252965_110253064
ES_00045841	chr5	-	828	1	FSM	ENSMUSG00000081865.2	ENSMUST00000118871.2	828	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGGTTTAAACAGTTT	3140	False	NA	NA	False	NA	NA	NA	110266715	110265887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110265900_110266700
ES_00045842	chr5	-	3956	13	NNC	ENSMUSG00000043323.18	novel	4720	19	NA	NA	4968	4	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_9	50.2922017370045	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCCAGTGTTTTGTTTG	NA	False	NA	3	True	GATAAA	-24	NA	110529860	110509615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110526196_110526364_110526759_110526981_110527134_110527460_110529466
ES_00045843	chr5	-	2571	14	FSM	ENSMUSG00000043323.18	ENSMUST00000198834.2	2571	14	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_13	45.448455751296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGGTCACTGGGAAAAATT	NA	False	NA	NA	False	NA	NA	NA	110534828	110510765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110534766
ES_00045844	chr5	-	2827	5	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4406	6867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	244.200737099625	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCATAGAGTGACTGCTG	NA	False	NA	NA	False	NA	NA	NA	110585593	110570873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110570907_110577744_110580012_110580766_110580968_110584479_110584595_110585382
ES_00045845	chr5	-	2712	4	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4406	6867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	281.899903433037	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCATAGAGTGACTGCTG	NA	False	NA	NA	False	NA	NA	NA	110585593	110570873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110570907_110577744_110580012_110580766_110580968_110585382
ES_00045846	chr5	-	3615	4	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4406	6867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	249.876413897395	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCATAGAGTGACTGCTG	NA	False	NA	NA	False	NA	NA	NA	110585593	110570873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110570907_110577744_110580012_110580766_110580968_110584479
ES_00045847	chr5	-	3240	5	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	0	6867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	242.030344171965	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCATAGAGTGACTGCTG	NA	False	NA	NA	False	NA	NA	NA	110596369	110570873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110570907_110577744_110580012_110580766_110580968_110584479_110584595_110595745
ES_00045849	chr5	-	680	5	FSM	ENSMUSG00000033294.12	ENSMUST00000145712.8	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_3	42.5382181103064	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCAGCTGCTTAGGCGA	8910	False	NA	NA	False	NA	NA	NA	110801214	110799109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
ES_00045852	chr5	-	11115	54	NNC	ENSMUSG00000029505.18	novel	10608	52	NA	NA	-106	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	45	junction_42	24.8215847913809	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTTGTTCTGTCTTAA	NA	False	NA	-5	True	AATAAA	-14	NA	110918689	110812243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110813597_110813623_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617_110846783_110848387_110848631_110849486_110849657_110851317_110851485_110852747_110852935_110855794_110855932_110856028_110856204_110856639_110856810_110858896_110859034_110866952_110867131_110867298_110867490_110868601_110868710_110872287_110872378_110874756_110874815_110875394_110875445_110877099_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
ES_00045857	chr5	-	1760	6	ISM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	450	0	0	0	3prime_fragment	FALSE	canonical	3	62	junction_4	230.873645096187	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928012	110921532	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552
ES_00045859	chr5	-	1983	2	FSM	ENSMUSG00000029346.13	ENSMUST00000147940.2	422	2	-1561	0	1238	0	multi-exon	FALSE	canonical	3	132	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGCTTTCATCTCTTC	NA	False	NA	NA	False	NA	NA	NA	112489646	112487584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_112487684_112487762
ES_00045866	chr5	-	2376	9	ISM	ENSMUSG00000042078.15	ENSMUST00000134790.8	1682	15	22212	-1163	-125	-52	3prime_fragment	FALSE	canonical	3	12	junction_8	2.91279504943276	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGGATTTAAATCTGGT	NA	False	NA	1	True	ATTAAA	-20	NA	114181067	114165022	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866
ES_00045867	chr5	-	202	1	Genic_Genomic	ENSMUSG00000042078.15	novel	NA	NA	NA	NA	-48	-10531	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATGTGCTGCAGTTAGT	NA	False	NA	NA	False	NA	NA	NA	114203327	114203125	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_114203100_114203300
ES_00045868	chr5	-	1030	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7978	False	NA	-2	True	AATAAA	-22	NA	114266279	114261986	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
ES_00045870	chr5	-	606	2	Intergenic	novelGene_3234	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCAGTCTCCCGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	114623932	114623198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_114623687_114623814
ES_00045871	chr5	-	1789	6	NNC	ENSMUSG00000011884.14	novel	1762	5	NA	NA	0	71580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	559.147350883468	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAGCCAAATGCC	NA	False	NA	NA	False	NA	NA	NA	114829045	114735878	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_114735913_114807465_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
ES_00045873	chr5	-	2854	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	75.7668002801448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGCTGATGTCTCCATAA	NA	False	NA	-5	True	TATAAA	-11	NA	114911531	114867638	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114881836_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ES_00045874	chr5	-	579	1	FSM	ENSMUSG00000041890.18	ENSMUST00000201442.2	3033	1	2971	-517	2971	517	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCACTTGATCCTAGAGG	7782	False	NA	NA	False	NA	NA	NA	114876452	114875873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114875900_114876500
ES_00045876	chr5	-	464	3	NNC	ENSMUSG00000072692.8	novel	682	2	NA	NA	-40	77445	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAAAGTCAGA	NA	False	NA	NA	False	NA	NA	NA	115241620	115163536	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_115163589_115180883_115180911_115241235
ES_00045878	chr5	-	451	3	NNC	ENSMUSG00000072692.8	novel	682	2	NA	NA	-40	77433	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	115241620	115163548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_115163588_115180883_115180911_115241235
ES_00045882	chr5	-	2242	1	FSM	ENSMUSG00000009013.6	ENSMUST00000202980.2	2242	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438722	115436480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115436500_115438700
ES_00045885	chr5	-	771	1	FSM	ENSMUSG00000107121.2	ENSMUST00000201728.2	768	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	788	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGACATTAGTTTTCCTTT	NA	False	NA	NA	False	AATACA	-20	NA	115769875	115769104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115769100_115769900
ES_00045886	chr5	-	373	2	Intergenic	novelGene_3245	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTGTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	115939153	115904161	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_115904504_115939122
ES_00045892	chr5	-	7297	3	FSM	ENSMUSG00000066900.12	ENSMUST00000202713.2	9778	3	2486	-5	2486	0	multi-exon	FALSE	canonical	3	595	junction_2	28	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCACGTGGTCTGTTTC	NA	False	NA	-4	True	GATAAA	-18	NA	117239980	117229744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117231097_117232974_117237604_117238664
ES_00045896	chr5	-	240	1	FSM	ENSMUSG00000106825.2	ENSMUST00000201971.2	985	1	234	511	234	-511	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTCTGTCTGTGTGGTTT	3726	False	NA	NA	False	NA	NA	NA	120690870	120690630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120690600_120690900
ES_00045897	chr5	-	904	3	NNC	ENSMUSG00000029600.11	novel	712	3	NA	NA	-1283	5	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_2	1.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCCTGATACTCTCCAT	9561	False	NA	2	True	NA	NA	NA	120745065	120740163	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_120740583_120742274_120742313_120744618
ES_00045898	chr5	-	277	1	FSM	ENSMUSG00002076672.1	ENSMUST00020182677.1	126	1	9	-160	9	160	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAGCAAGGGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	120990350	120990073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120990100_120990400
ES_00045899	chr5	-	1568	8	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	-798	-463	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	234.35713197196	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121046382	121034781	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356_121045575_121046226
ES_00045900	chr5	-	2493	12	FSM	ENSMUSG00000042726.15	ENSMUST00000042312.14	2503	12	12	-2	9	2	multi-exon	FALSE	canonical	3	16	junction_2	8.79894809640935	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATTCTTTCTATAGAG	3581	False	NA	3	True	AATAAA	-21	NA	121523683	121509785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ES_00045901	chr5	-	2237	12	NIC	ENSMUSG00000042726.15	novel	2503	12	NA	NA	1	2	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	10.4920276700026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTTGTGATTCTTTCTA	3631	False	NA	-2	True	AATAAA	-16	NA	121523633	121509790	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_121510476_121510665_121510739_121511401_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ES_00045902	chr5	-	1290	4	NNC	ENSMUSG00000029616.10	novel	748	4	NA	NA	0	35579	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	396.568895513616	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTTAGATAAACTGGTTA	3222	False	NA	NA	False	AATAAA	-33	NA	121590559	121531073	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121531099_121582815_121583636_121585203_121585343_121590253
ES_00045903	chr5	-	4235	15	NNC	ENSMUSG00000029454.16	novel	2234	14	NA	NA	0	2025	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	58.6505128115793	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCATTATTGATTCT	NA	False	NA	NA	False	AAAAAG	-8	NA	121683968	121661075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227_121683715_121683738
ES_00045905	chr5	-	4320	7	FSM	ENSMUSG00000042594.17	ENSMUST00000136960.8	4313	7	0	-7	0	7	multi-exon	FALSE	canonical	3	25	junction_6	11.6535640709422	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGATCTCTGCATCCACA	NA	False	NA	-13	True	ATTAAA	-20	NA	121974888	121953543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121956157_121956278_121956451_121956527_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
ES_00045906	chr5	-	4691	21	FSM	ENSMUSG00000042589.19	ENSMUST00000168288.9	4697	21	6	0	6	0	multi-exon	FALSE	canonical	2	5	junction_5	3.31058907144937	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAACTCCAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	122062978	121998370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121999445_122002709_122002984_122003914_122004104_122005153_122005424_122006507_122006680_122007070_122007844_122011112_122011215_122011719_122012365_122013141_122013242_122013349_122013399_122014892_122014952_122015030_122015223_122017877_122017983_122020835_122020885_122022069_122022137_122022809_122022887_122023900_122024022_122025416_122025552_122036339_122036419_122059376_122059425_122062867
ES_00045908	chr5	-	2201	13	FSM	ENSMUSG00000038593.19	ENSMUST00000141281.4	2201	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	9.19654222460207	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATCCCAAGATTGTGCT	NA	False	NA	NA	False	NA	NA	NA	122402523	122379349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384698_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
ES_00045912	chr5	-	2751	16	FSM	ENSMUSG00000029471.14	ENSMUST00000200109.5	2751	16	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	25.1434992702996	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAACCAAAAACAAAAA	4699	False	NA	NA	False	NA	NA	NA	122917396	122871250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122872309_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ES_00045919	chr5	-	951	3	FSM	ENSMUSG00000090086.8	ENSMUST00000159072.2	957	3	0	6	0	-6	multi-exon	FALSE	canonical	1	3	junction_1	0	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAATGAGTGAGTTGCTG	NA	False	NA	-5	True	AATAAA	-14	NA	123276172	123271791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123272494_123272686_123272781_123276017
ES_00045920	chr5	-	1017	2	FSM	ENSMUSG00000090086.8	ENSMUST00000160099.2	1017	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTGGATCCGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	123278352	123275533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123276130_123277931
ES_00045923	chr5	-	2111	4	NNC	ENSMUSG00000029427.12	novel	1868	3	NA	NA	-181	4513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215.80701255211	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTAGCTCATGTTGGCTGC	NA	False	NA	NA	False	NA	NA	NA	123841662	123831843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_123831870_123837825_123839186_123840625_123840744_123841055
ES_00045924	chr5	-	3347	11	ISM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	2398	298	-1422	0	3prime_fragment	FALSE	canonical	3	64	junction_7	191.23600602397	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	6744	False	NA	-8	True	AATAAA	-13	NA	123885054	123866786	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559
ES_00045925	chr5	-	2154	14	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_13	228.998204173729	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAACTGGTGTTAATTTA	4388	False	NA	-10	True	AATAAA	-11	NA	123887410	123866788	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123873884_123873960_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123884834_123884934_123887351
ES_00045926	chr5	-	2029	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAACTGGTGTTAATTTA	4339	False	NA	-10	True	AATAAA	-11	NA	123887459	123866788	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ES_00045927	chr5	-	229	2	Antisense	novelGene_ENSMUSG00000023106.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGGGCCCATAACTCAG	NA	False	NA	NA	False	GATAAA	-4	NA	124055804	124023332	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_124023366_124055608
ES_00045929	chr5	-	2003	9	ISM	ENSMUSG00000038126.18	ENSMUST00000184951.8	5008	23	0	44833	0	14	5prime_fragment	FALSE	canonical	3	20	junction_7	9.58840445538255	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTTTTTTTACTATTG	NA	False	NA	NA	False	TATAAA	-28	NA	124465915	124436563	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459062_124462936_124463201_124465848
ES_00045930	chr5	-	1286	4	FSM	ENSMUSG00000029394.12	ENSMUST00000111474.8	1286	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	588.445975996664	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCATCTACCCAACCTC	7271	False	NA	NA	False	TTTAAA	-27	NA	124489717	124483667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_124484218_124486663_124486791_124488140_124488236_124489203
ES_00045931	chr5	-	10020	31	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	243	junction_29	68.980423954111	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGGTGTTGTGGTTTGG	NA	False	NA	49	True	AATAAA	-21	NA	124563631	124506764	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
ES_00045932	chr5	-	10006	31	NIC	ENSMUSG00000038095.16	novel	10071	32	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_30	121.800091224195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGGTGTTGTGGTTTGG	NA	False	NA	49	True	AATAAA	-21	NA	124564020	124506764	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563909
ES_00045935	chr5	-	8868	49	NIC	ENSMUSG00000029478.17	novel	8661	48	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	65	junction_46	20.0123225927316	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTCTCACTGGGCAGC	NA	False	NA	5	True	AATATA	-22	NA	125256244	125094213	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ES_00045936	chr5	-	8847	49	NNC	ENSMUSG00000029478.17	novel	8661	48	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_43	26.404891894727	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGTTTCTACTCTGCTTC	NA	False	NA	-7	True	AATATA	-10	NA	125256244	125094225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107288_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183371_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ES_00045938	chr5	-	1255	4	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28415	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	431.806541044585	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGAAAGTGACCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	125466819	125434613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434656_125463034_125463963_125465102_125465329_125466760
ES_00045939	chr5	-	2119	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	458	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	-12	True	AATAAA	-14	NA	125466819	125463040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125464366_125464593_125465329_125466760
ES_00045940	chr5	-	1663	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	458	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	-12	True	AATAAA	-14	NA	125466819	125463040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125463910_125464593_125465329_125466760
ES_00045941	chr5	-	1435	4	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1927.42851142829	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	-12	True	AATAAA	-14	NA	125466819	125463040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125463279_125463506_125464366_125465049_125465329_125466760
ES_00045948	chr5	-	399	2	Antisense	novelGene_ENSMUSG00000049971.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	0	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTATTTCTCTTGTTCCTT	NA	False	NA	-1	True	AATAAA	-21	NA	127760498	127733932	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_127734238_127760404
ES_00045949	chr5	-	342	2	Antisense	novelGene_ENSMUSG00000049971.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGTCTCCTCCTGTCTC	NA	False	NA	NA	False	AATAAA	-28	NA	127760498	127748942	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_127749191_127760404
ES_00045950	chr5	-	300	2	FSM	ENSMUSG00000072591.11	ENSMUST00000140028.8	287	2	0	-13	0	13	multi-exon	FALSE	canonical	3	12	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGATGTGTGTGTTGTCC	NA	False	NA	NA	False	AATAAA	-33	NA	128662442	128656156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_128656350_128662335
ES_00045951	chr5	-	758	3	FSM	ENSMUSG00000029428.14	ENSMUST00000128448.2	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGAGAGCCTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	129066222	129063218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129063495_129064781_129064907_129065865
ES_00045952	chr5	-	345	4	FSM	ENSMUSG00000029428.14	ENSMUST00000149877.2	361	4	16	0	16	0	multi-exon	FALSE	canonical	3	49	junction_3	4.10960933531265	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGGACCCAGGTTGGC	NA	False	NA	NA	False	NA	NA	NA	129076683	129070572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129070633_129071859_129071935_129073425_129073526_129076573
ES_00045953	chr5	-	626	3	Genic_Genomic	ENSMUSG00000060419.9	novel	441	1	NA	NA	-55	76642	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAAATCTGAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	129205636	129128498	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_129128525_129156452_129156477_129205060
ES_00045954	chr5	-	3868	3	FSM	ENSMUSG00000051034.8	ENSMUST00000049778.7	3929	3	0	61	0	-61	multi-exon	TRUE	canonical	3	10	junction_2	2	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGGCGAGGTAGAAAG	NA	False	NA	NA	False	ATTAAA	-40	NA	129747163	129731717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129735450_129737833_129737930_129747123
ES_00045955	chr5	-	442	2	FSM	ENSMUSG00000025537.13	ENSMUST00000154495.2	670	2	228	0	228	0	multi-exon	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAACATTGTCCATCG	NA	False	NA	NA	False	NA	NA	NA	129898700	129895823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129895867_129898301
ES_00045956	chr5	-	1960	1	FSM	ENSMUSG00000025537.13	ENSMUST00000200832.2	2119	1	109	50	109	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTTCCCAACACTTACA	NA	False	NA	NA	False	NA	NA	NA	129900709	129898749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129898700_129900700
ES_00045957	chr5	-	342	1	FSM	ENSMUSG00000094092.2	ENSMUST00000119542.2	483	1	127	14	127	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCATGGCCTAATGTACA	8670	False	NA	NA	False	NA	NA	NA	130237276	130236934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130236900_130237300
ES_00045958	chr5	-	2465	1	FSM	ENSMUSG00000107143.2	ENSMUST00000202719.2	2615	1	95	55	95	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCTCTGAAACTGTAAG	4995	False	NA	NA	False	NA	NA	NA	130251811	130249346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130249300_130251800
ES_00045959	chr5	-	1452	6	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	0	14806	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	328.107665256391	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCGGTCAGAGGCGGTAC	NA	False	NA	NA	False	NA	NA	NA	130284246	130259765	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_130259799_130274575_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ES_00045962	chr5	-	6186	14	NIC	ENSMUSG00000029673.20	novel	4217	14	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	9.03379584978658	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCAGATGTTTCTTTGTG	NA	False	NA	-4	True	ATTAAA	-15	NA	131567526	131466169	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501096_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
ES_00045963	chr5	-	3572	17	FSM	ENSMUSG00000029673.20	ENSMUST00000160071.10	3572	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	21.5779835712237	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGTCTCGGAGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	132079176	131467917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131499251_131499297_131501075_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131799598_131799629_132059828_132059865_132079146
ES_00045965	chr5	-	475	1	FSM	ENSMUSG00000106570.2	ENSMUST00000196044.2	2973	1	77	2421	77	-2421	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTACCAAGTTTTTACA	NA	False	NA	NA	False	NA	NA	NA	131914700	131914225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_131914200_131914700
ES_00045967	chr5	-	4287	34	NNC	ENSMUSG00000060261.17	novel	4375	34	NA	NA	0	45623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.772192308913	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCAAAAAAGGGGGAGCCA	699	False	NA	NA	False	NA	NA	NA	134343536	134221064	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134221098_134266690_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00045970	chr5	-	3503	30	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	15	2	combination_of_known_junctions	FALSE	canonical	1	4	junction_21	70.9610601462162	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTTTTTTTTCCCCTTT	NA	False	NA	NA	False	AGTAAA	-23	NA	134485095	134386507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
ES_00045971	chr5	-	3447	29	NIC	ENSMUSG00000023079.15	novel	3461	30	NA	NA	-10	2	combination_of_known_junctions	FALSE	canonical	1	4	junction_20	65.9798979900356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTTTTTTTTCCCCTTT	NA	False	NA	NA	False	AGTAAA	-23	NA	134485120	134386507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
ES_00045973	chr5	-	3581	30	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	4	junction_21	66.2989482199928	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTTTTTTTTCCCCTTT	NA	False	NA	NA	False	AGTAAA	-23	NA	134485570	134386507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ES_00045980	chr5	-	3042	4	FSM	ENSMUSG00000040731.14	ENSMUST00000200874.2	896	4	-207	-1939	-19	936	multi-exon	FALSE	canonical	3	2106	junction_3	61.0482504981829	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGTGTGTGTGTGTGTGTG	9859	False	NA	NA	False	NA	NA	NA	134668363	134651796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134654317_134654394_134654460_134656441_134656630_134668094
ES_00045981	chr5	-	1057	5	FSM	ENSMUSG00000040731.14	ENSMUST00000202289.4	1057	5	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_1	622.036373534539	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCCAGCCCAGGCAAGGAA	2202	False	NA	NA	False	NA	NA	NA	134668179	134652732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ES_00045982	chr5	-	202	2	Intergenic	novelGene_3317	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1135	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTTTCATTTTCTTTTAA	6218	False	NA	NA	False	AATAAA	-1	NA	134682426	134680088	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_134680240_134682375
ES_00045984	chr5	-	7606	29	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	0	27	intron_retention	TRUE	canonical	3	120	junction_15	35.0224964144768	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGAGGGTTGGGCTCC	2203	False	NA	29	True	GATAAA	-15	NA	135487059	135435357	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953
ES_00045985	chr5	-	2870	1	FSM	ENSMUSG00000107029.2	ENSMUST00000201893.2	3471	1	75	526	75	-526	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	135646078	135643208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135643200_135646100
ES_00045986	chr5	-	679	5	FSM	ENSMUSG00000039886.9	ENSMUST00000141779.6	679	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	34.9025428873026	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAGGCATGGAGATAT	NA	False	NA	-23	True	AATAAA	-2	NA	135765444	135764357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294
ES_00045987	chr5	-	1741	11	FSM	ENSMUSG00000029703.11	ENSMUST00000148475.8	2339	11	0	598	0	-598	multi-exon	FALSE	canonical	3	342	junction_4	23.993540797473	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTGGCTCATCTGTTC	6736	False	NA	NA	False	NA	NA	NA	136164876	136158852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
ES_00045988	chr5	-	2769	9	FSM	ENSMUSG00000005057.14	ENSMUST00000196397.5	2797	9	0	28	0	-26	multi-exon	TRUE	canonical	1	1	junction_1	2.75850956133924	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGAGCCTGTTTTAG	2551	False	NA	NA	False	NA	NA	NA	136273708	136247028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136248007_136248495_136248668_136250701_136250911_136253008_136253177_136253258_136253351_136254057_136254150_136256220_136256323_136260506_136261241_136273486
ES_00045989	chr5	-	2822	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176216.9	2821	23	0	-1	0	1	multi-exon	FALSE	canonical	3	30	junction_13	19.9470373118581	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCTTTTATTCTGTGA	NA	False	NA	0	True	AATAAA	-19	NA	136596102	136276987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355793_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ES_00045990	chr5	-	12820	24	FSM	ENSMUSG00000029705.18	ENSMUST00000004097.16	12862	24	0	42	0	-42	multi-exon	FALSE	canonical	1	1	junction_10	49.8576044183481	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTAGGTGTGATAATTG	NA	False	NA	-47	True	NA	NA	NA	136596299	136295310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136304321_136308283_136308549_136311721_136311911_136315614_136315918_136333576_136333634_136334302_136334469_136336612_136337449_136338600_136338703_136340348_136340415_136341496_136341863_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355793_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ES_00045994	chr5	-	2966	20	NIC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	165	junction_3	155.869662861488	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAACTGTGTGCTGTAT	8291	False	NA	-13	True	AGTAAA	-17	NA	137305902	137293977	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_137294169_137294248_137294376_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ES_00046001	chr5	-	270	2	Intergenic	novelGene_3328	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGGCCTTCACTGGCTC	NA	False	NA	NA	False	NA	NA	NA	137346316	137345953	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_137346101_137346193
ES_00046003	chr5	-	726	2	FSM	ENSMUSG00000029713.16	ENSMUST00000167225.2	712	2	0	-14	0	13	multi-exon	FALSE	canonical	3	709	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACTGTCCCCCTTTCTCC	6122	False	NA	8	True	CATAAA	-35	NA	137527182	137526375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137526872_137526952
ES_00046008	chr5	-	2571	8	FSM	ENSMUSG00000029718.15	ENSMUST00000128755.8	2573	8	0	2	0	0	multi-exon	FALSE	canonical	3	231	junction_7	121.856724166087	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	4102	False	NA	-4	True	AATAAA	-19	NA	137609670	137603366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137603580_137603718_137603890_137603984_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
ES_00046009	chr5	-	1155	7	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	2607	0	-577	0	3prime_fragment	FALSE	canonical	3	52	junction_6	194.602729226037	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGATCGTGTCTGAGGT	6741	False	NA	-7	True	AATAAA	-16	NA	137607031	137603369	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878
ES_00046010	chr5	-	1759	10	FSM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	-174	0	-63	0	multi-exon	FALSE	canonical	2	6	junction_7	224.611763815799	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGATCGTGTCTGAGGT	3960	False	NA	-7	True	AATAAA	-16	NA	137609812	137603369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878_137606954_137607152_137607412_137608658_137608768_137609498
ES_00046015	chr5	-	3528	7	NNC	ENSMUSG00000045348.17	novel	3912	7	NA	NA	-78	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	11.6141675934562	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCTTCTTATATCCCC	8545	False	NA	0	True	ATTAAA	-17	NA	137739442	137729142	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_137730196_137731312_137731423_137731977_137732185_137733101_137734617_137736070_137736418_137737912_137738079_137739312
ES_00046022	chr5	-	2353	1	FSM	ENSMUSG00000080935.4	ENSMUST00000121655.2	1293	1	-57	-1003	-57	1003	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGGGTGAACATGACT	1738	False	NA	NA	False	AATAAA	-27	NA	138363871	138361518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_138361500_138363900
ES_00046023	chr5	-	7121	47	NNC	ENSMUSG00000029547.11	novel	7102	47	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_11	56.6553270836602	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGTGTCCTGTGTTGTC	NA	False	NA	-8	True	AATGAA	-20	NA	139761428	139737035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739203_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757484_139757569_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
ES_00046026	chr5	-	2618	11	NNC	ENSMUSG00000029560.13	novel	2627	11	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	58.2223324850525	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCACGCTGCAGTTTCTC	7733	False	NA	-5	True	AATAAA	-21	NA	140375004	140326050	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_140327398_140330040_140330188_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ES_00046028	chr5	-	4371	24	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	8.47948709081224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCTTTGGCAGGTG	4498	False	NA	NA	False	AGTAAA	-18	NA	140688046	140649259	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_140651249_140651762_140651964_140654776_140654876_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ES_00046030	chr5	-	1363	6	FSM	ENSMUSG00000036526.9	ENSMUST00000196169.2	1299	6	-52	-12	-52	10	multi-exon	FALSE	canonical	2	4	junction_5	3.77359245282264	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACAGTCTCACTAGCAG	NA	False	NA	NA	False	ATTAAA	-33	NA	140868012	140858734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756
ES_00046037	chr5	-	4675	18	NNC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	0	79980	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	55.0173926573196	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAAACCTATC	6130	False	NA	NA	False	NA	NA	NA	143098749	142896667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142896698_142976647_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
ES_00046038	chr5	-	383	1	FSM	ENSMUSG00000045078.13	ENSMUST00000199044.2	1402	1	446	573	446	-573	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCCTTACATACGGGAAAT	NA	False	NA	NA	False	NA	NA	NA	143002083	143001700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143001700_143002100
ES_00046041	chr5	-	2219	6	NNC	ENSMUSG00000039244.11	novel	2208	6	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	52.428999608995	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGGCATTGTGGGGTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	143301079	143286963	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300608
ES_00046042	chr5	-	1186	6	FSM	ENSMUSG00000001844.11	ENSMUST00000161915.8	1216	6	49	-19	49	11	multi-exon	TRUE	canonical	3	232	junction_4	19.2935222289762	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCATTGTCTGTGTTGGT	8220	False	NA	-2	True	AATACA	-37	NA	143312060	143302232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853
ES_00046043	chr5	-	1351	7	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	91.3309002108998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGGATATTTGTTTTCT	5957	False	NA	-21	True	AATACA	-18	NA	143314323	143302251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145
ES_00046044	chr5	-	1586	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_8	100.752171192486	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGGATATTTGTTTTCT	5326	False	NA	-21	True	AATACA	-18	NA	143314954	143302251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314853
ES_00046045	chr5	-	1541	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	11	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCATTGTCTGTGTTGGT	5323	False	NA	-2	True	AATACA	-37	NA	143314957	143302232	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
ES_00046046	chr5	-	1424	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	3	-11	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	112.457883272824	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATTTGTACACATGGAT	5339	False	NA	-32	True	AATACA	-7	NA	143314941	143302262	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143312061_143314145_143314326_143314853
ES_00046047	chr5	-	1350	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-5	-14	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	84.1580146425249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACCTATTTGTACACATG	5328	False	NA	-35	True	AATACA	-4	NA	143314952	143302265	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
ES_00046049	chr5	-	1858	16	NNC	ENSMUSG00000029617.11	novel	1769	15	NA	NA	-39	26444	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.252369429171	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGCAACACCATGGGTAC	NA	False	NA	NA	False	NA	NA	NA	143951734	143898282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_143898310_143924727_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ES_00046058	chr5	-	910	1	FSM	ENSMUSG00000029627.13	ENSMUST00000198959.2	2243	1	0	1333	0	-1333	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGGTTTTGAGATACAG	1591	False	NA	-2	True	AATAAA	-16	NA	145138678	145137768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_145137800_145138700
ES_00046059	chr5	-	812	3	FSM	ENSMUSG00000029634.16	ENSMUST00000162219.2	812	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	59.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTCAGAGACAGAATGGT	5747	False	NA	NA	False	NA	NA	NA	146154799	146148112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_146148743_146152906_146153000_146154710
ES_00046072	chr5	-	4764	12	FSM	ENSMUSG00000029657.16	ENSMUST00000201431.4	4764	12	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_6	83.4292891075534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAGAAAGTTGATC	NA	False	NA	NA	False	NA	NA	NA	149559803	149544146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ES_00046076	chr5	-	8313	3	FSM	ENSMUSG00000029655.18	ENSMUST00000145822.2	714	3	-468	-7131	0	90	multi-exon	FALSE	canonical	3	244	junction_2	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAATGAAAGGAGATAGA	NA	False	NA	NA	False	ATTAAA	-27	NA	150571726	150559346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_150566781_150570465_150570543_150570924
ES_00046077	chr5	-	3842	3	FSM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_2	11.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAATTTATTTTT	5472	False	NA	NA	False	NA	NA	NA	150589042	150571674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_150574205_150584743_150585979_150588965
ES_00046080	chr5	+	278	1	Intergenic	novelGene_3070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATGTATGTATGTATA	NA	False	NA	NA	False	NA	NA	NA	16551247	16551525	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_16551200_16551500
ES_00046081	chr5	+	207	1	Intergenic	novelGene_3073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAGTCACTTATAATAAA	9234	False	NA	NA	False	NA	NA	NA	20895428	20895635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_20895400_20895600
ES_00046082	chr5	+	208	1	Intergenic	novelGene_3084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTCTGCGGGTCCCTGTG	NA	False	NA	NA	False	TTTAAA	-25	NA	23573142	23573350	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23573100_23573400
ES_00046083	chr5	+	3470	1	Intergenic	novelGene_3102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACATAATTCTATGGAT	NA	False	NA	NA	False	AATAAA	-9	NA	30835605	30839075	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_30835600_30839100
ES_00046084	chr5	+	202	1	Intergenic	novelGene_3106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAATCTTCAAGTGCT	2537	False	NA	NA	False	NA	NA	NA	32981680	32981882	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_32981700_32981900
ES_00046087	chr5	+	212	1	Intergenic	novelGene_3113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAGAGAGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	36028350	36028562	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_36028400_36028600
ES_00046088	chr5	+	205	1	Intergenic	novelGene_3118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTCTGTTGGCTCAGT	NA	False	NA	NA	False	ATTAAA	-25	NA	39004825	39005030	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_39004800_39005000
ES_00046089	chr5	+	1779	1	Intergenic	novelGene_3123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAAGAATTAGAAGTAACT	NA	False	NA	NA	False	NA	NA	NA	60106441	60108220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_60106400_60108200
ES_00046091	chr5	+	235	1	Intergenic	novelGene_3127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAAAGGAGCCTGCCTAA	NA	False	NA	NA	False	NA	NA	NA	65596940	65597175	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_65596900_65597200
ES_00046092	chr5	+	217	1	Intergenic	novelGene_3130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTACACATGTTTAATACC	NA	False	NA	NA	False	NA	NA	NA	65901441	65901658	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_65901400_65901700
ES_00046093	chr5	+	653	1	Intergenic	novelGene_3134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCTGCATCTTTACCT	NA	False	NA	NA	False	NA	NA	NA	67911701	67912354	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_67911700_67912400
ES_00046094	chr5	+	204	1	Intergenic	novelGene_3145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTATGTAACCTTCAC	NA	False	NA	NA	False	NA	NA	NA	77059469	77059673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_77059500_77059700
ES_00046095	chr5	+	204	1	Intergenic	novelGene_3149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGTGGTTTTTAAAGAA	5558	False	NA	NA	False	NA	NA	NA	77471047	77471251	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_77471000_77471300
ES_00046096	chr5	+	205	1	Intergenic	novelGene_3151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAAATATCTAGGCAAAT	NA	False	NA	NA	False	NA	NA	NA	82678744	82678949	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_82678700_82678900
ES_00046098	chr5	+	206	1	Intergenic	novelGene_3155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTAGTCACTGGCCCTT	NA	False	NA	NA	False	NA	NA	NA	87187252	87187458	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_87187300_87187500
ES_00046099	chr5	+	200	1	Intergenic	novelGene_3160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCTTTCTCCTACTCA	NA	False	NA	NA	False	NA	NA	NA	90280680	90280880	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_90280700_90280900
ES_00046100	chr5	+	793	1	Intergenic	novelGene_3163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGCCTATTACCCAGCTC	2375	False	NA	NA	False	NA	NA	NA	91076995	91077788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_91077000_91077800
ES_00046101	chr5	+	205	1	Intergenic	novelGene_3168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCCTTTTTTAGGTTG	NA	False	NA	NA	False	NA	NA	NA	92527979	92528184	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_92528000_92528200
ES_00046103	chr5	+	482	1	Intergenic	novelGene_3178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGTATTTATAACAAAAAAAC	NA	False	NA	NA	False	TTTAAA	-30	NA	98155433	98155915	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_98155400_98155900
ES_00046104	chr5	+	233	1	Intergenic	novelGene_3182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4857	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGTAGCTGGATGCT	NA	False	NA	NA	False	NA	NA	NA	101304135	101304368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_101304100_101304400
ES_00046105	chr5	+	205	1	Intergenic	novelGene_3184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103836016	103836221	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_103836000_103836200
ES_00046106	chr5	+	651	1	Intergenic	novelGene_3198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGTCAAAAGTAAAAGAAGT	NA	False	NA	NA	False	AAAACA	-37	NA	104925626	104926277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104925600_104926300
ES_00046107	chr5	+	239	1	Intergenic	novelGene_3203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGGGGAAGGAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	105833230	105833469	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_105833200_105833500
ES_00046109	chr5	+	220	1	Intergenic	novelGene_3206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCTTAAACTAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	106946339	106946559	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_106946300_106946600
ES_00046111	chr5	+	222	1	Intergenic	novelGene_3210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCTTTTAACAAATTA	NA	False	NA	NA	False	NA	NA	NA	108388156	108388378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_108388200_108388400
ES_00046112	chr5	+	201	1	Intergenic	novelGene_3211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGGTATTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	108838331	108838532	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_108838300_108838500
ES_00046114	chr5	+	2424	1	Intergenic	novelGene_3224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCTTGCATTCTGGCTG	8831	False	NA	NA	False	NA	NA	NA	110612343	110614767	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110612300_110614800
ES_00046115	chr5	+	292	1	Intergenic	novelGene_3228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCGACTTTCTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	112303206	112303498	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_112303200_112303500
ES_00046116	chr5	+	224	1	Intergenic	novelGene_3239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2567	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTTTTTCTCCAAAG	7438	False	NA	NA	False	NA	NA	NA	115287171	115287395	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115287200_115287400
ES_00046117	chr5	+	2337	1	Intergenic	novelGene_3243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTTTAAAATTTGTGT	1959	False	NA	NA	False	NA	NA	NA	115474010	115476347	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115474000_115476300
ES_00046118	chr5	+	344	1	Intergenic	novelGene_3247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCAGTGCTCTTAACTGC	NA	False	NA	NA	False	NA	NA	NA	116165318	116165662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_116165300_116165700
ES_00046120	chr5	+	202	1	Intergenic	novelGene_3252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGCGGTCTTATAGCC	NA	False	NA	NA	False	NA	NA	NA	118970212	118970414	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_118970200_118970400
ES_00046121	chr5	+	205	1	Intergenic	novelGene_3260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTCACATTTTCCATCT	NA	False	NA	NA	False	NA	NA	NA	121416274	121416479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121416300_121416500
ES_00046122	chr5	+	238	1	Intergenic	novelGene_3261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGGTTTTTCAAGACA	NA	False	NA	NA	False	NA	NA	NA	121426344	121426582	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121426300_121426600
ES_00046123	chr5	+	219	1	Intergenic	novelGene_3263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCACCAGCCCGGTTTAT	3986	False	NA	NA	False	NA	NA	NA	121529526	121529745	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121529500_121529700
ES_00046124	chr5	+	213	1	Intergenic	novelGene_3265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACTTGTAAGCACAGCT	NA	False	NA	NA	False	NA	NA	NA	121672906	121673119	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121672900_121673100
ES_00046126	chr5	+	233	1	Intergenic	novelGene_3275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAAAAAAGTCGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	123219699	123219932	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123219700_123219900
ES_00046127	chr5	+	220	1	Intergenic	novelGene_3286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTCTAAGTGGAG	835	False	NA	NA	False	NA	NA	NA	124638349	124638569	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_124638300_124638600
ES_00046128	chr5	+	215	1	Intergenic	novelGene_3288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTGGTATTTTGTGAC	NA	False	NA	NA	False	NA	NA	NA	125282286	125282501	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125282300_125282500
ES_00046129	chr5	+	231	1	Intergenic	novelGene_3291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCAAAACATGACGGGCT	NA	False	NA	NA	False	NA	NA	NA	125352159	125352390	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125352200_125352400
ES_00046130	chr5	+	1008	1	Intergenic	novelGene_3302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTTTCTTTTGTTTTAC	6744	False	NA	NA	False	NA	NA	NA	129722257	129723265	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129722300_129723300
ES_00046131	chr5	+	1060	1	Intergenic	novelGene_3303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTTAGATCCATCCTTA	7960	False	NA	NA	False	NA	NA	NA	129723473	129724533	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129723500_129724500
ES_00046132	chr5	+	218	1	Intergenic	novelGene_3305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGCACTTCTTGAGAGTA	NA	False	NA	NA	False	NA	NA	NA	129928597	129928815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129928600_129928800
ES_00046133	chr5	+	264	1	Intergenic	novelGene_3309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAACAAAGTTGGGTT	NA	False	NA	NA	False	AAGAAA	-1	NA	130863541	130863805	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_130863500_130863800
ES_00046134	chr5	+	276	1	Intergenic	novelGene_3312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTCCATTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134353608	134353884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_134353600_134353900
ES_00046135	chr5	+	278	1	Intergenic	novelGene_3315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGAGCTTTTTACAGA	NA	False	NA	NA	False	NA	NA	NA	134384110	134384388	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_134384100_134384400
ES_00046136	chr5	+	261	1	Intergenic	novelGene_3318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGGGCTTTCTGCAC	6417	False	NA	NA	False	NA	NA	NA	134683118	134683379	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_134683100_134683400
ES_00046137	chr5	+	600	1	Intergenic	novelGene_3319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCATCTCTTTTGTTGTT	1225	False	NA	NA	False	AATAGA	-19	NA	135042370	135042970	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_135042400_135043000
ES_00046138	chr5	+	203	1	Intergenic	novelGene_3324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGACAAGGAAAAACAAAACA	NA	False	NA	NA	False	AAAAAG	-9	NA	135901522	135901725	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_135901500_135901700
ES_00046140	chr5	+	207	1	Intergenic	novelGene_3329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2739	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTGCTTCTCCAGAGAA	3235	False	NA	NA	False	NA	NA	NA	137708601	137708808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_137708600_137708800
ES_00046143	chr5	+	219	1	Intergenic	novelGene_3330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGGTTTTTCGAGACA	NA	False	NA	NA	False	NA	NA	NA	137772168	137772387	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_137772200_137772400
ES_00046144	chr5	+	201	1	Intergenic	novelGene_3334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAAAACTTCTTAACCCC	NA	False	NA	NA	False	NA	NA	NA	139903253	139903454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_139903300_139903500
ES_00046145	chr5	+	213	1	Intergenic	novelGene_3338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCTAGGAAGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	142579963	142580176	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_142580000_142580200
ES_00046146	chr5	+	208	1	Intergenic	novelGene_3339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGATTTCTTAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	143217232	143217440	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_143217200_143217400
ES_00046153	chr5	+	223	1	FSM	ENSMUSG00000000600.16	ENSMUST00000197611.2	4262	1	-135	4174	-135	-2791	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAGAAAAAAAATTCTCC	NA	False	NA	NA	False	NA	NA	NA	3865555	3865778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3865600_3865800
ES_00046154	chr5	+	813	1	FSM	ENSMUSG00000104699.2	ENSMUST00000199852.2	793	1	-20	0	-20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTCTAGGAGACATGC	NA	False	NA	NA	False	NA	NA	NA	3925341	3926154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_3925300_3926200
ES_00046155	chr5	+	319	1	FSM	ENSMUSG00000106535.2	ENSMUST00000198500.2	1887	1	329	1239	329	-1239	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCAGAAATCAAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	4123899	4124218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_4123900_4124200
ES_00046156	chr5	+	2602	11	FSM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	12.7342059037853	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTTGTTTTACATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	8472898	8504736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_8473040_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ES_00046157	chr5	+	3732	18	ISM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	41797	5	-17945	0	3prime_fragment	FALSE	canonical	2	2	junction_1	63.1301725415122	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAGATAATGGTTATGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	8751873	8798570	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_8751978_8752152_8752279_8752368_8752573_8752792_8752964_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ES_00046158	chr5	+	474	1	FSM	ENSMUSG00000079659.6	ENSMUST00000200542.2	5254	1	-44	4824	-44	-1918	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCAGCCCTATTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	9205688	9206162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_9205700_9206200
ES_00046159	chr5	+	774	1	FSM	ENSMUSG00000045435.10	ENSMUST00000196723.2	2178	1	-29	1433	-29	-1433	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAAAATGGTGGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	21087475	21088249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21087500_21088200
ES_00046160	chr5	+	306	1	FSM	ENSMUSG00000106135.2	ENSMUST00000197353.2	808	1	238	264	238	-264	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCAACAAGAAGTGGAT	NA	False	NA	NA	False	AGTAAA	-29	NA	21803975	21804281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21804000_21804300
ES_00046161	chr5	+	2994	5	FSM	ENSMUSG00000038525.17	ENSMUST00000095495.3	2700	5	-202	-92	-28	6	multi-exon	FALSE	canonical	3	351	junction_4	29.9457843443781	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTGTTTTATTTGTGT	NA	False	NA	12	True	AGTAAA	-32	NA	21850848	21867698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550
ES_00046162	chr5	+	358	1	FSM	ENSMUSG00000081242.2	ENSMUST00000120619.2	635	1	269	8	269	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGGTGAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-11	NA	21894807	21895165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_21894800_21895200
ES_00046164	chr5	+	1431	12	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1482	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	517.445553489878	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21991762	22008785	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006209_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ES_00046165	chr5	+	1176	1	FSM	ENSMUSG00000105156.2	ENSMUST00000198791.2	296	1	4	-884	4	884	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATGAATACTGAAAGATT	NA	False	NA	NA	False	ATTAAA	-12	NA	22768958	22770134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_22769000_22770100
ES_00046166	chr5	+	7325	27	FSM	ENSMUSG00000029004.16	ENSMUST00000115128.8	7317	27	-8	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.24166024173517	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATATGAAAATATGTTTA	NA	False	NA	NA	False	TATAAA	-31	NA	23639438	23709233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_23639782_23651523_23651597_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196_23698506_23700983_23701239_23701401_23701547_23701969_23702221_23702536_23702594_23702725_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724_23705811_23706521
ES_00046167	chr5	+	1323	5	ISM	ENSMUSG00000028999.16	ENSMUST00000124680.8	3363	14	2	14371	0	-4173	intron_retention	FALSE	canonical	3	71	junction_2	8.1700673191841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCACTGTCTTAGCCTGT	NA	False	NA	NA	False	AAAAAG	-12	NA	23992718	24010995	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307
ES_00046168	chr5	+	201	2	Antisense	novelGene_ENSMUSG00000086697.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	24009361	24025882	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_24009390_24025709
ES_00046169	chr5	+	216	1	FSM	ENSMUSG00000081071.2	ENSMUST00000117132.2	216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGAGCCTGCTACTTTA	9838	False	NA	NA	False	NA	NA	NA	24461819	24462035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24461800_24462000
ES_00046170	chr5	+	1668	10	FSM	ENSMUSG00000028973.19	ENSMUST00000115074.6	1657	10	-11	0	-11	0	multi-exon	FALSE	canonical	1	9	junction_9	57.8772647745017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAACCACGTCAGGAGTG	NA	False	NA	NA	False	NA	NA	NA	24599382	24608975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24608625
ES_00046171	chr5	+	292	1	FSM	ENSMUSG00000105858.2	ENSMUST00000198276.2	582	1	-40	330	-40	-330	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCAAGCCTGTGTCATT	7362	False	NA	NA	False	NA	NA	NA	24652865	24653157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24652900_24653200
ES_00046172	chr5	+	3862	14	FSM	ENSMUSG00000028954.12	ENSMUST00000200337.2	3862	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_1	95.1263252285049	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890984	24915374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ES_00046173	chr5	+	205	2	Intergenic	novelGene_3089	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1084	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTTCTCTCCGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	24963751	24995807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_24963804_24995654
ES_00046174	chr5	+	965	1	FSM	ENSMUSG00000101856.2	ENSMUST00000188465.2	1454	1	-202	691	-202	-691	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATAGCCTTTTTGTCGTT	NA	False	NA	NA	False	TATAAA	-22	NA	25734808	25735773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_25734800_25735800
ES_00046175	chr5	+	603	1	FSM	ENSMUSG00000104651.2	ENSMUST00000199646.2	1096	1	881	-388	881	388	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTGGTGTTGCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	26162504	26163107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_26162500_26163100
ES_00046176	chr5	+	4488	26	FSM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	0	3	0	-3	multi-exon	TRUE	canonical	2	5	junction_22	2.910395162173	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTCAGGTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-11	NA	27466972	27932495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697_27858737_27866584_27866693_27868427_27868520_27869710_27869759_27871407_27871527_27901847_27901896_27914447_27914547_27917605_27917676_27919369_27919565_27923451_27923507_27926042_27926155_27927670_27927730_27928369_27928443_27928538_27928613_27930602
ES_00046178	chr5	+	1284	8	FSM	ENSMUSG00000029130.13	ENSMUST00000160383.8	1295	8	11	0	1	0	multi-exon	FALSE	canonical	1	1	junction_5	17.6946896219269	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTTAGTTACTTAAAAT	NA	False	NA	48	True	ATTAAA	-19	NA	29401001	29430479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29401111_29401577_29401644_29402923_29403019_29403571_29403837_29410666_29410700_29411693_29411803_29429114_29429283_29430040
ES_00046179	chr5	+	2344	1	FSM	ENSMUSG00000029130.13	ENSMUST00000163050.5	4672	1	-2	2330	-2	603	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTAATGGAGGCTGGGC	NA	False	NA	NA	False	GATAAA	-24	NA	29428781	29431125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_29428800_29431100
ES_00046180	chr5	+	3163	11	NNC	ENSMUSG00000001569.11	novel	9219	11	NA	NA	55	-5738	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	52.8295371927485	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATAACATGATTGTGTT	3014	False	NA	NA	False	NA	NA	NA	29639716	29657103	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29644885_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ES_00046181	chr5	+	1608	9	NNC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	0	948	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	653.772597601796	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGTGTCTGTCGATAA	4546	False	NA	NA	False	AATAAA	-45	NA	29940937	29973049	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29972050_29972994
ES_00046182	chr5	+	2248	2	FSM	ENSMUSG00000104667.2	ENSMUST00000197982.2	2249	2	1	0	1	0	multi-exon	FALSE	canonical	2	6	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGCTCTGGAGCACCA	NA	False	NA	NA	False	AATAAA	-14	NA	30297938	30302684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_30298047_30300544
ES_00046183	chr5	+	3583	16	FSM	ENSMUSG00000029165.18	ENSMUST00000201917.4	3579	16	-4	0	-4	0	multi-exon	FALSE	canonical	2	6	junction_1	10.2792131129879	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACATGGAAATAAGTCTC	NA	False	NA	NA	False	CATAAA	-15	NA	31046274	31064309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ES_00046184	chr5	+	3296	17	FSM	ENSMUSG00000029165.18	ENSMUST00000114700.9	3296	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14.1548357461328	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGTAGTTGCTTTGTAT	NA	False	NA	10	True	AATAAA	-18	NA	31046349	31064010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048217_31048305_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ES_00046185	chr5	+	442	2	FSM	ENSMUSG00000029162.16	ENSMUST00000200978.2	544	2	102	0	102	0	multi-exon	FALSE	canonical	3	29	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGTCTGTCTGTCTGT	NA	False	NA	6	True	AATAAA	-15	NA	31088059	31088589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31088218_31088305
ES_00046186	chr5	+	6529	43	FSM	ENSMUSG00000013629.17	ENSMUST00000201182.4	6529	43	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_38	169.127492867178	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGCAAGGAATCCCGATG	7201	False	NA	NA	False	NA	NA	NA	31212271	31235576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
ES_00046188	chr5	+	2111	15	FSM	ENSMUSG00000029146.15	ENSMUST00000202032.4	2111	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	136.066535345089	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATATGGCCCCCTGACC	NA	False	NA	NA	False	NA	NA	NA	31351197	31356487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ES_00046189	chr5	+	591	6	FSM	ENSMUSG00000029148.16	ENSMUST00000202842.4	580	6	-11	0	2	0	multi-exon	FALSE	canonical	3	51	junction_2	178.872692158417	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGTACATAGAGAAGCT	NA	False	NA	NA	False	AAAAAG	-20	NA	31398209	31402305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31398347_31401106_31401177_31401261_31401336_31401509_31401633_31401801_31401904_31402220
ES_00046190	chr5	+	1028	6	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	0	0	intron_retention	FALSE	canonical	2	4	junction_5	36.8152142462868	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410352_31410441
ES_00046194	chr5	+	1217	1	FSM	ENSMUSG00000107151.2	ENSMUST00000201018.2	232	1	-988	3	-988	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	439	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCTACAATTTTACTTC	NA	False	NA	NA	False	NA	NA	NA	31864751	31865968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_31864800_31866000
ES_00046196	chr5	+	211	2	Antisense	novelGene_ENSMUSG00000085234.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAATAGCCATTTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	32714820	32721883	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_32714835_32721686
ES_00046197	chr5	+	5469	43	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	40.826307878205	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCCCTCC	2005	False	NA	7	True	AATAAA	-8	NA	33021056	33149005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021166_33021501_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ES_00046198	chr5	+	5220	42	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	0	-45	combination_of_known_junctions	FALSE	canonical	3	20	junction_40	34.0963571440375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCACACCAGCTGTACATA	2052	False	NA	-45	True	NA	NA	NA	33021103	33148953	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33148085_33148169_33148282
ES_00046201	chr5	+	2508	1	Genic_Genomic	ENSMUSG00000037355.15	novel	NA	NA	NA	NA	38911	436	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACAAGGACTGGAAAACTG	NA	False	NA	NA	False	NA	NA	NA	33575026	33577534	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_33575000_33577500
ES_00046202	chr5	+	553	1	Intergenic	novelGene_3107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGACCTCTGCTGACCTC	NA	False	NA	NA	False	NA	NA	NA	33692312	33692865	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_33692300_33692900
ES_00046204	chr5	+	678	6	FSM	ENSMUSG00000037313.17	ENSMUST00000138240.5	679	6	1	0	1	0	multi-exon	FALSE	canonical	3	32	junction_4	391.11001009946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	4577	False	NA	35	True	ACTAAA	-23	NA	33826005	33829545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
ES_00046205	chr5	+	5757	10	FSM	ENSMUSG00000057406.17	ENSMUST00000114397.9	5738	10	-19	0	0	0	multi-exon	FALSE	canonical	3	39	junction_8	76.9184272098984	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCATTCTATTTTTAACC	NA	False	NA	NA	False	AATAAA	-14	NA	33978068	34029846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097
ES_00046206	chr5	+	3857	1	FSM	ENSMUSG00000107227.2	ENSMUST00000201811.2	3532	1	-790	465	-790	-465	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTGAAAGTACTTTGTC	NA	False	NA	NA	False	CATAAA	-6	NA	34626217	34630074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_34626200_34630100
ES_00046207	chr5	+	3951	16	NIC	ENSMUSG00000029106.15	novel	4007	16	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	159.558752676108	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGGTTGGGGGCAACTT	NA	False	NA	21	True	AATAAA	-22	NA	34731108	34789647	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34778175_34778263_34782622_34782780_34785758_34785858_34787813
ES_00046210	chr5	+	2702	1	FSM	ENSMUSG00000045318.7	ENSMUST00000049545.7	3445	1	743	0	743	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTGCATTGGTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	35436405	35439107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_35436400_35439100
ES_00046211	chr5	+	1924	15	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	19.8329760443437	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1546	False	NA	5	True	AAAACA	-8	NA	35915256	36015530	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
ES_00046212	chr5	+	1716	13	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	18.719234018042	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1553	False	NA	5	True	AAAACA	-8	NA	35915263	36015530	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169
ES_00046213	chr5	+	1958	16	NNC	ENSMUSG00000029095.18	novel	660	8	NA	NA	28109	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	29.9863672728495	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	NA	False	NA	5	True	AAAACA	-8	NA	35943503	36015530	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_35943629_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35989029_35989087_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
ES_00046215	chr5	+	447	3	FSM	ENSMUSG00000029121.17	ENSMUST00000202434.4	778	3	331	0	191	0	multi-exon	FALSE	canonical	1	1	junction_1	3.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCTCCCAGGGCATGAC	7598	False	NA	NA	False	NA	NA	NA	37399614	37426129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_37399870_37422575_37422665_37426026
ES_00046216	chr5	+	2804	12	FSM	ENSMUSG00000050248.12	ENSMUST00000101258.5	2796	12	0	-8	0	8	multi-exon	FALSE	canonical	3	19	junction_8	6.81029847284656	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCAATCCTAGCGCTAT	8951	False	NA	NA	False	NA	NA	NA	37495951	37545116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028
ES_00046217	chr5	+	1661	12	NNC	ENSMUSG00000029125.15	novel	3002	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	40.2629785040368	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGCAGTCAGTGAGTC	NA	False	NA	15	True	AATAAA	-15	NA	38196625	38294163	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38268639_38268785_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
ES_00046218	chr5	+	2394	10	FSM	ENSMUSG00000029125.15	ENSMUST00000154929.5	900	10	-1	-1493	0	0	multi-exon	FALSE	canonical	1	3	junction_1	32.4550971857016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATTGTGGACTTAGA	NA	False	NA	NA	False	CATAAA	-13	NA	38196625	38295109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_38196844_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
ES_00046221	chr5	+	636	2	FSM	ENSMUSG00000015804.15	ENSMUST00000119579.3	636	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTTGTTGTTTGTA	7398	False	NA	22	True	AGTAAA	-11	NA	45677636	45682940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_45677827_45682494
ES_00046222	chr5	+	503	1	FSM	ENSMUSG00000031558.16	ENSMUST00000197737.2	4798	1	-256	4551	-256	1287	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCTTTCCAACGCCACT	NA	False	NA	NA	False	NA	NA	NA	48331319	48331822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_48331300_48331800
ES_00046223	chr5	+	894	1	FSM	ENSMUSG00000061461.12	ENSMUST00000204839.2	2076	1	-98	1280	9	-606	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTTCCTCAAATC	3361	False	NA	NA	False	NA	NA	NA	53424433	53425327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53424400_53425300
ES_00046225	chr5	+	2247	21	FSM	ENSMUSG00000039178.10	ENSMUST00000201958.4	2242	21	-5	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	19.8148303045976	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACAGATATCTCTAATAA	NA	False	NA	NA	False	ATTAAA	-20	NA	53966990	54061305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_53967201_53986691_53986765_53987796_53987841_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
ES_00046227	chr5	+	987	4	NIC	ENSMUSG00000029178.15	novel	1562	6	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	314.494656375731	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	8235	False	NA	18	True	AATAAA	-18	NA	64969670	64980452	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_64969847_64974077_64974174_64979216_64979701_64980221
ES_00046229	chr5	+	419	2	FSM	ENSMUSG00000029199.12	ENSMUST00000127519.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGGATTAGATGTGT	NA	False	NA	NA	False	NA	NA	NA	65554884	65557261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65555232_65557189
ES_00046230	chr5	+	890	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202601.4	890	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	546.724427842766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694676	65752488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65694890_65723331_65723426_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ES_00046231	chr5	+	291	1	FSM	ENSMUSG00000107362.2	ENSMUST00000202699.2	1752	1	81	1380	81	-1380	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACCAGAAGAGGGCATCA	NA	False	NA	NA	False	NA	NA	NA	65699352	65699643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_65699400_65699600
ES_00046232	chr5	+	9113	21	NNC	ENSMUSG00000037795.15	novel	5308	18	NA	NA	0	67294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	30.1782620440608	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACAATCTC	NA	False	NA	NA	False	NA	NA	NA	65921462	66054745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_65921589_65928729_65928785_65932927_65933007_65941652_65941720_65943448_65943705_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947_65987446_66054715
ES_00046233	chr5	+	702	2	FSM	ENSMUSG00000029205.13	ENSMUST00000201664.2	550	2	32	-184	32	-2	multi-exon	FALSE	canonical	1	1	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGTGTTTGAGTTCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	66133270	66134667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_66133354_66134048
ES_00046234	chr5	+	358	1	Intergenic	novelGene_3131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACTTACTTCGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	66215069	66215427	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_66215100_66215400
ES_00046235	chr5	+	3383	18	NIC	ENSMUSG00000029221.16	novel	5711	18	NA	NA	8	350	combination_of_known_junctions	FALSE	canonical	1	7	junction_2	108.293143108373	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTTAAGAAATAGCCAGT	404	False	NA	NA	False	AATAAA	-10	NA	67464315	67513479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_67464541_67473020_67473189_67482019_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67497293_67497350_67499436_67499573_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
ES_00046236	chr5	+	685	1	FSM	ENSMUSG00000043484.4	ENSMUST00000063197.4	592	1	21	-114	21	114	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATATAGTAAGACAAATTA	NA	False	NA	NA	False	NA	NA	NA	69618515	69619200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_69618500_69619200
ES_00046237	chr5	+	1876	16	NIC	ENSMUSG00000029208.17	novel	3433	17	NA	NA	9	-7	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	33.0987747339518	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGGCAGCAGGTGTTCTC	NA	False	NA	-5	True	AATAAA	-6	NA	69714339	69729066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
ES_00046238	chr5	+	4878	9	NNC	ENSMUSG00000036087.19	novel	4828	9	NA	NA	-7	46008	intron_retention	FALSE	non_canonical	0	0	junction_8	82.5435491119688	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCCAAAGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	73071639	73182180	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73131873_73132190_73133339_73136182_73182151
ES_00046239	chr5	+	1334	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	-23	0	-23	0	multi-exon	FALSE	canonical	1	2	junction_7	338.614704889417	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGGCTTTGTTTGAA	NA	False	NA	31	True	AATAAA	-32	NA	73450103	73471300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
ES_00046240	chr5	+	474	1	FSM	ENSMUSG00000107272.2	ENSMUST00000202586.2	454	1	-35	15	-35	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	1820	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGGTCCCATGGAAAA	NA	False	NA	NA	False	NA	NA	NA	73547956	73548430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_73548000_73548400
ES_00046241	chr5	+	2029	17	NIC	ENSMUSG00000029227.16	novel	1969	16	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	220.557452478374	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696150	74756806	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ES_00046242	chr5	+	650	1	FSM	ENSMUSG00000107165.2	ENSMUST00000201412.2	1330	1	-7	687	-7	-687	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTCATTCATTGAATGAAG	NA	False	NA	NA	False	AAAACA	-22	NA	74736600	74737250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_74736600_74737200
ES_00046244	chr5	+	578	3	Intergenic	novelGene_3142	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTGCTTTAAGTGATGG	NA	False	NA	NA	False	AGTAAA	-17	NA	75526640	75527653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_75526760_75526842_75526923_75527274
ES_00046248	chr5	+	577	1	FSM	ENSMUSG00000098449.2	ENSMUST00000185173.2	652	1	64	11	64	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTAGCTCCAAAAATCCT	NA	False	NA	NA	False	AATAAA	-12	NA	76452786	76453363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_76452800_76453400
ES_00046250	chr5	+	1405	1	FSM	ENSMUSG00000036435.14	ENSMUST00000202151.2	2990	1	-365	1950	-365	-1950	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCATGAGAAACTCCCAAG	NA	False	NA	NA	False	NA	NA	NA	76700127	76701532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_76700100_76701500
ES_00046251	chr5	+	5820	27	NNC	ENSMUSG00000036403.16	novel	5537	26	NA	NA	1	534	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	8.80021516681544	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTTTCTTTCCAACAT	NA	False	NA	8	True	AATAAA	-18	NA	76736548	76794847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649_76764803_76769130_76769209_76772473_76772626_76778511_76778628_76778699_76778855_76779271_76779328_76780005_76780175_76781519_76781631_76781998_76782185_76784708_76784919_76785910_76786114_76786768_76786874_76788728_76788843_76792478_76794533_76794782
ES_00046252	chr5	+	895	2	Genic_Genomic	ENSMUSG00000106926.2	novel	799	1	NA	NA	0	3344	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCATGACAAACATGTTTC	NA	False	NA	NA	False	AATAGA	-36	NA	82484697	82488840	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_82485557_82488804
ES_00046253	chr5	+	204	2	Intergenic	novelGene_3153	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACATTCATTGCCTGAGA	NA	False	NA	NA	False	NA	NA	NA	85969498	86034987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_85969556_86034840
ES_00046254	chr5	+	3222	16	FSM	ENSMUSG00000035851.15	ENSMUST00000119339.8	3222	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	76.9910817346182	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACTTGCTGTATTTCCT	NA	False	NA	8	True	AATAAA	-16	NA	86952079	86984513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ES_00046255	chr5	+	218	2	Genic_Genomic	ENSMUSG00000035851.15	novel	3335	1	NA	NA	222	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACCTTAGTTCTAAATAG	NA	False	NA	NA	False	NA	NA	NA	86954491	86957570	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_86954511_86957371
ES_00046256	chr5	+	6313	13	FSM	ENSMUSG00000035851.15	ENSMUST00000151489.8	6313	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	91.2668553686873	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86963513	86984518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
ES_00046258	chr5	+	1858	1	FSM	ENSMUSG00000054945.5	ENSMUST00000238484.2	1869	1	8	3	8	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGATTGTGTCCAGGT	5671	False	NA	NA	False	AATAAA	-18	NA	90514486	90516344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_90514500_90516300
ES_00046259	chr5	+	650	5	FSM	ENSMUSG00000102644.6	ENSMUST00000192939.6	650	5	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	9.73075022801428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCACTGAGGAAGACAAT	NA	False	NA	NA	False	AAAACA	-8	NA	92110748	92117525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92110838_92111541_92111645_92112954_92113164_92114310_92114434_92117399
ES_00046260	chr5	+	383	2	FSM	ENSMUSG00000047963.8	ENSMUST00000050952.4	1985	2	15	1587	-2	173	multi-exon	FALSE	canonical	1	1	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTTCCTGTTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	92750924	92752851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_92751197_92752740
ES_00046261	chr5	+	6366	9	NIC	ENSMUSG00000029381.17	novel	687	3	NA	NA	13	218	intron_retention	FALSE	canonical	3	17	junction_1	36.4946485803056	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACTTGTGCTATGCTGTG	NA	False	NA	4	True	AATAAA	-16	NA	93073278	93113395	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_93073342_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ES_00046262	chr5	+	1454	7	FSM	ENSMUSG00000029486.14	ENSMUST00000121477.2	1550	7	0	96	0	-96	multi-exon	FALSE	canonical	3	666	junction_1	19.5078331845327	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACATTGTATACTACTGA	NA	False	NA	NA	False	NA	NA	NA	96358002	96387447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697
ES_00046263	chr5	+	247	3	FSM	ENSMUSG00000029484.13	ENSMUST00000197196.2	665	3	418	0	418	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCCCTTGAGTGTTAAT	7377	False	NA	NA	False	ATTAAA	-44	NA	96976206	96978347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_96976264_96976555_96976650_96978251
ES_00046264	chr5	+	603	1	FSM	ENSMUSG00000091623.3	ENSMUST00000046721.2	603	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACGAGGTTTCTGGGTTTG	NA	False	NA	NA	False	ATTAAA	-29	NA	100126919	100127522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100126900_100127500
ES_00046265	chr5	+	1586	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	428.65710489883	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5420	False	NA	20	True	AATAAA	-22	NA	100666321	100695646	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678022_100681111_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ES_00046266	chr5	+	2943	12	FSM	ENSMUSG00000029314.15	ENSMUST00000092990.4	3035	12	89	3	36	0	multi-exon	FALSE	canonical	3	20	junction_2	3.94172425248705	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGCATTATTCTTC	NA	False	NA	5	True	AATAAA	-16	NA	100994318	101046965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ES_00046267	chr5	+	9120	22	NNC	ENSMUSG00000029313.19	novel	1613	7	NA	NA	-1188	7	at_least_one_novel_splicesite	FALSE	non_canonical	1	26	junction_21	62.1828916836503	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCTTTTATTTTGTTC	NA	False	NA	31	True	AATAAA	-28	NA	103839051	104003195	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078_103964116_103966800_103966853_103973845_103973901_103974008_103974047_103976213_103976377_103981335_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567_104001867_104002366
ES_00046268	chr5	+	1903	8	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	-781	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	2158.63050878778	815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582202	104588916	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_104582574_104582861_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ES_00046269	chr5	+	9407	8	FSM	ENSMUSG00000097392.5	ENSMUST00000239420.2	9445	8	38	0	36	0	multi-exon	FALSE	canonical	1	3	junction_4	5.06287004190553	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGCTTGGTTCTTTTTTT	NA	False	NA	4	True	AATAAA	-20	NA	104656253	104702073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104656438_104665288_104670591_104671982_104672015_104672124_104672292_104673683_104673839_104686691_104686840_104689031_104689129_104698751
ES_00046270	chr5	+	1297	5	Intergenic	novelGene_3193	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	46.7245920260413	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTGTCTTCAGATTCA	NA	False	NA	NA	False	NA	NA	NA	104810204	104898201	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104810344_104836648_104836776_104895405_104895467_104896979_104897907_104898158
ES_00046271	chr5	+	5263	1	Intergenic	novelGene_3195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAGTTTGAATTGATGA	NA	False	NA	NA	False	AATAAA	-20	NA	104844239	104849502	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104844200_104849500
ES_00046272	chr5	+	1598	6	Intergenic	novelGene_3196	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	39.9869978868132	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGTATCCAATGTGGCAA	NA	False	NA	NA	False	NA	NA	NA	104870736	104898336	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104870864_104871431_104871610_104895041_104895169_104895405_104895467_104896979_104898005_104898256
ES_00046273	chr5	+	1121	1	FSM	ENSMUSG00000048334.9	ENSMUST00000055593.9	1449	1	374	-46	374	46	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTTAGTAGTAACTATT	NA	False	NA	NA	False	NA	NA	NA	104924018	104925139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_104924000_104925100
ES_00046274	chr5	+	1380	12	FSM	ENSMUSG00000029290.13	ENSMUST00000150440.8	1365	12	-15	0	-15	0	multi-exon	FALSE	canonical	0	0	junction_4	12.9365904279616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAGGAGGAGGAAGGGG	NA	False	NA	NA	False	NA	NA	NA	106024415	106062646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036566_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ES_00046275	chr5	+	6868	17	ISM	ENSMUSG00000111375.5	ENSMUST00000211896.2	5256	18	-16	-367	-16	-19	intron_retention	FALSE	canonical	2	10	junction_13	5.58142846859117	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTGTGTGAGTGTGCAC	NA	False	NA	NA	False	AATAAA	-1	NA	107585846	107659054	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107632912_107632994_107633622_107633720_107638528_107638618_107639344_107639448_107643736_107643920_107644601_107644740_107645586_107645717_107647892_107647955_107651204_107651881_107652369_107652461_107652856_107652997_107654741
ES_00046276	chr5	+	2330	13	FSM	ENSMUSG00000033773.15	ENSMUST00000112651.8	2321	13	9	-18	9	18	multi-exon	TRUE	canonical	1	2	junction_3	43.4808386916965	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGACTGCCGAGCTC	NA	False	NA	44	True	AATAAA	-37	NA	107745570	107809722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107745727_107746387_107746434_107749596_107749726_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ES_00046277	chr5	+	472	3	FSM	ENSMUSG00000033773.15	ENSMUST00000150074.2	456	3	-16	0	-16	0	multi-exon	FALSE	canonical	1	1	junction_1	76.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGCTCTTAGAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	107745810	107749663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_107746170_107746387_107746434_107749596
ES_00046278	chr5	+	701	1	FSM	ENSMUSG00000104748.2	ENSMUST00000196922.2	1165	1	34	430	34	-430	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCCCCTCTTCCCAAGCG	NA	False	NA	NA	False	NA	NA	NA	108016373	108017074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108016400_108017100
ES_00046279	chr5	+	412	1	FSM	ENSMUSG00000084855.3	ENSMUST00000117916.2	227	1	-263	78	-263	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGGCAACAGAATAACATC	NA	False	NA	NA	False	NA	NA	NA	108149862	108150274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108149900_108150300
ES_00046281	chr5	+	6504	18	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-5026	19912	intron_retention	TRUE	canonical	0	0	junction_5	731.870325269703	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTGAGGAATGACT	NA	False	NA	NA	False	NA	NA	NA	108208513	108276782	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108258841_108276650
ES_00046282	chr5	+	3966	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	1	54	junction_8	529.471786263423	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208600	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241270_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00046283	chr5	+	4210	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4927	0	at_least_one_novel_splicesite	FALSE	canonical	2	36	junction_3	667.303049127606	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208612	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228787_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00046284	chr5	+	4330	18	NIC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	721.64786436212	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213607	108256870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228708_108228787_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ES_00046285	chr5	+	1164	4	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-93	94044	-54	9	5prime_fragment	FALSE	canonical	2	80	junction_2	5.90668171555645	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCGCAAGAATCTTTGGG	1050	False	NA	NA	False	NA	NA	NA	108280686	108287450	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779
ES_00046286	chr5	+	4588	28	NIC	ENSMUSG00000056531.12	novel	5336	29	NA	NA	-46	-689	combination_of_known_splicesites	FALSE	canonical	2	4	junction_23	17.7468094468228	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGTGAAAATTACTGTT	1058	False	NA	NA	False	AGTAAA	-23	NA	108280694	108380805	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779_108286939_108288724_108288832_108296776_108296906_108303624_108303722_108306390_108306513_108309332_108309625_108311513_108311639_108315874_108316030_108319478_108319700_108321616_108321728_108322731_108322864_108328263_108328399_108328679_108328758_108336797_108336915_108339748_108339917_108341566_108341710_108343861_108344026_108345622_108345837_108349190_108349291_108349930_108350048_108359959_108360164_108363852_108363991_108368563_108368765_108376445_108376914_108380599
ES_00046288	chr5	+	1485	10	NIC	ENSMUSG00000033623.14	novel	7708	11	NA	NA	-23	4561	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	41.4794311662605	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAGTATACCCAAAG	NA	False	NA	NA	False	TATAAA	-6	NA	108609155	108648717	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108609318_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
ES_00046289	chr5	+	1129	11	NIC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	0	-680	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	37.9578713839435	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTCCGGAAGGCTACAC	NA	False	NA	NA	False	NA	NA	NA	108777697	108793857	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_108777767_108786138_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ES_00046290	chr5	+	2318	6	FSM	ENSMUSG00000008090.15	ENSMUST00000112560.8	2318	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	42.3820716813135	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842133	108854790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_108842399_108842760_108842985_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ES_00046291	chr5	+	2448	7	NNC	ENSMUSG00000008090.15	novel	2329	7	NA	NA	13	23	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	45.7726871495315	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGGTGTTTTTACCT	NA	False	NA	27	True	AAGAAA	-14	NA	108842146	108854813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_108842399_108842903_108842985_108851161_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ES_00046292	chr5	+	787	2	Intergenic	novelGene_3218	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTGTTTTGCTTGAATT	NA	False	NA	NA	False	AGTAAA	-20	NA	110014569	110018029	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110014679_110017351
ES_00046293	chr5	+	485	5	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	239	617	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	73.5369804928106	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAAAAGAACACATAGTGG	NA	False	NA	NA	False	NA	NA	NA	110071504	110090193	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940_110090072_110090155
ES_00046294	chr5	+	285	2	Antisense	novelGene_ENSMUSG00000109771.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	149	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	110193405	110238380	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_110193542_110238231
ES_00046296	chr5	+	378	2	Intergenic	novelGene_3221	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTTAGCTCCATCTT	NA	False	NA	NA	False	NA	NA	NA	110223273	110223750	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110223459_110223557
ES_00046297	chr5	+	296	1	FSM	ENSMUSG00000081256.2	ENSMUST00000120365.2	319	1	4	19	4	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCCCTGGACAAGTGGC	8826	False	NA	NA	False	NA	NA	NA	110476073	110476369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_110476100_110476400
ES_00046299	chr5	+	2278	15	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_12	80.9591733845031	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9199	False	NA	19	True	NA	NA	NA	110987865	111021999	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
ES_00046300	chr5	+	1763	6	FSM	ENSMUSG00000029344.16	ENSMUST00000071455.7	1741	6	-22	0	-6	0	multi-exon	FALSE	canonical	1	4	junction_1	131.441241625298	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424550	112463221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_112424638_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ES_00046301	chr5	+	1301	1	FSM	ENSMUSG00000105735.2	ENSMUST00000195895.2	1301	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCGAGGATCCGGGTTC	NA	False	NA	NA	False	AATAAA	-17	NA	112788200	112789501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_112788200_112789500
ES_00046302	chr5	+	3296	3	NNC	ENSMUSG00000053334.7	novel	3133	3	NA	NA	-33	133	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	26	41	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGACATCAAGCCAGC	682	False	NA	NA	False	NA	NA	NA	113873830	113878794	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_113874111_113874881_113875234_113876130
ES_00046303	chr5	+	236	2	Intergenic	novelGene_3230	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGCACAGGAGCACAGTA	9123	False	NA	NA	False	NA	NA	NA	114074589	114146985	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_114074642_114146801
ES_00046304	chr5	+	405	1	FSM	ENSMUSG00000105514.2	ENSMUST00000197936.2	1853	1	946	502	946	-502	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTTCCGCTGTTGTGTC	6561	False	NA	NA	False	NA	NA	NA	114254835	114255240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_114254800_114255200
ES_00046306	chr5	+	3467	15	NIC	ENSMUSG00000041870.18	novel	3717	15	NA	NA	-16	-1	combination_of_known_junctions	FALSE	canonical	3	45	junction_9	98.811508872774	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTGAGTTTCATTTCT	1098	False	NA	28	True	AGTAAA	-18	NA	114912989	114943882	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_114913386_114924001_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936578_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
ES_00046307	chr5	+	2330	2	FSM	ENSMUSG00000029550.12	ENSMUST00000128678.2	2330	2	0	0	0	0	multi-exon	FALSE	canonical	3	700	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTATTTTTTTTGA	NA	False	NA	18	True	AATACA	-16	NA	115232815	115236315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115234015_115235184
ES_00046308	chr5	+	792	4	NIC	ENSMUSG00000060152.15	novel	1025	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	770	junction_1	71.2242156073964	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGCACTTGCCTT	NA	False	NA	11	True	AATAAA	-13	NA	115376106	115379025	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_115376337_115378220_115378371_115378531_115378616_115378697
ES_00046309	chr5	+	200	2	Antisense	novelGene_ENSMUSG00000041740.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	20	junction_1	0	1434	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCTCGCCAACTCCACA	NA	False	NA	NA	False	NA	NA	NA	115393113	115396082	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_115393167_115395935
ES_00046311	chr5	+	3271	14	NIC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	-195	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_10	24.7218849935262	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2194	False	NA	15	True	AATAAA	-15	NA	115567462	115593757	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115588273_115588343_115588845_115589034_115589515_115589580_115591884
ES_00046312	chr5	+	835	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1220	-5	at_least_one_novel_splicesite	TRUE	canonical	1	122	junction_2	942.564686109129	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTGGTGATTGTT	NA	False	NA	25	True	AATAAA	-16	NA	115603100	115612776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_115603279_115604200_115604380_115608859_115609001_115610051_115610180_115612567
ES_00046313	chr5	+	1300	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	305	0	149	0	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	False	NA	3	True	ATTAAA	-14	NA	115697830	115701786	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ES_00046314	chr5	+	633	1	FSM	ENSMUSG00000041638.19	ENSMUST00000202584.2	1918	1	1436	-151	1436	151	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAAAGTGCTTGTTGATG	NA	False	NA	NA	False	TTTAAA	-36	NA	115704797	115705430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_115704800_115705400
ES_00046315	chr5	+	215	2	Intergenic	novelGene_3246	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	111	junction_1	0	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTACCTCAGATCTCTG	NA	False	NA	NA	False	NA	NA	NA	115972324	116054342	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115972379_116054181
ES_00046316	chr5	+	6572	47	NIC	ENSMUSG00000029516.20	novel	9514	47	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	8	junction_37	9.38357673210672	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTGTTTTATTGA	8481	False	NA	NA	False	AATAAA	-16	NA	115983336	116136557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116125746_116125792_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ES_00046317	chr5	+	4518	29	NNC	ENSMUSG00000029516.20	novel	3487	26	NA	NA	-3733	-1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	9.69904266262545	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTTGTTTTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	116079622	116136556	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_116079823_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119708_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ES_00046318	chr5	+	425	1	FSM	ENSMUSG00000082365.3	ENSMUST00000119191.2	478	1	270	-217	270	34	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGGAATAAAATTTGGAAAA	1648	False	NA	NA	False	NA	NA	NA	118641174	118641599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118641200_118641600
ES_00046319	chr5	+	2147	5	FSM	ENSMUSG00000018076.13	ENSMUST00000201614.2	2218	5	0	71	0	-71	multi-exon	FALSE	canonical	3	9	junction_4	2.29128784747792	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGCAGTAATATGGGAAAT	NA	False	NA	NA	False	NA	NA	NA	118698743	118858108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_118698923_118731397_118731636_118809077_118809163_118818952_118819037_118856547
ES_00046320	chr5	+	2813	16	NNC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	54.5084702897938	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	80	False	NA	6	True	AATAAA	-22	NA	120649316	120672089	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658846_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ES_00046322	chr5	+	8146	31	ISM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	107865	7	8061	-7	3prime_fragment	FALSE	canonical	2	5	junction_6	6.45677938294317	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGAGTCTGTGGTCACC	2930	False	NA	12	True	AATAAA	-23	NA	121466146	121506633	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_121466310_121466425_121466575_121467127_121467208_121467520_121467685_121469738_121469977_121470984_121471122_121471485_121471613_121472399_121472538_121474652_121474790_121477487_121477649_121479935_121480118_121480712_121480919_121481155_121481287_121481541_121481748_121482745_121482926_121486481_121487789_121488492_121488701_121491553_121491778_121491876_121492029_121493625_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
ES_00046323	chr5	+	3634	12	NNC	ENSMUSG00000029458.15	novel	3744	12	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	9	junction_2	41.136740329767	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTACGTTTGAGTCTGAA	945	False	NA	12	True	AATAAA	-22	NA	121798663	121825311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_121798912_121800062_121800225_121801422_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191
ES_00046324	chr5	+	6987	22	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-19	0	intron_retention	FALSE	canonical	0	0	junction_9	56.2918778351201	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	623	False	NA	4	True	TTTAAA	-7	NA	121849652	121953013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447
ES_00046325	chr5	+	201	1	Intergenic	novelGene_3268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGTTTTTCGAGACA	NA	False	NA	NA	False	NA	NA	NA	121890425	121890626	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121890400_121890600
ES_00046327	chr5	+	2375	4	FSM	ENSMUSG00000044134.10	ENSMUST00000198155.2	636	4	-24	-1715	-3	0	multi-exon	FALSE	canonical	1	4	junction_3	14.7271480229163	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGCTGGGTGTATTA	5410	False	NA	-1	True	AATAAA	-10	NA	121987043	121992662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_121987188_121988532_121988610_121989230_121989343_121990620
ES_00046330	chr5	+	215	1	Intergenic	novelGene_3273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGAAAAGCCAAGTGAAAT	3816	False	NA	NA	False	AAGAAA	-13	NA	122711789	122712004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_122711800_122712000
ES_00046332	chr5	+	3470	2	NNC	ENSMUSG00000038384.17	novel	2375	2	NA	NA	1597	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCCGTCTCTCTTGCTCT	538	False	NA	34	True	TATAAA	-34	NA	123303040	123306695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_123303285_123303469
ES_00046334	chr5	+	215	1	Intergenic	novelGene_3277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTATTTTTCTAAGCTT	3964	False	NA	NA	False	NA	NA	NA	123449768	123449983	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123449800_123450000
ES_00046335	chr5	+	205	2	Antisense	novelGene_ENSMUSG00000049550.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAACAAACCAAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	123791014	123816008	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_123791068_123815856
ES_00046336	chr5	+	375	1	Intergenic	novelGene_3282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	161	False	NA	NA	False	NA	NA	NA	123809802	123810177	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123809800_123810200
ES_00046338	chr5	+	220	2	Genic_Genomic	ENSMUSG00000061882.13	novel	4470	1	NA	NA	645	51040	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTATTTTGTGTTGGG	NA	False	NA	NA	False	AAGAAA	-44	NA	124101335	124158998	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_+_124101531_124158973
ES_00046342	chr5	+	215	2	Intergenic	novelGene_3284	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCTTTCCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124294795	124347368	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_124294847_124347204
ES_00046343	chr5	+	556	1	FSM	ENSMUSG00000049327.18	ENSMUST00000196860.2	1271	1	257	458	257	-458	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATCACAGATTAATTTG	NA	False	NA	NA	False	NA	NA	NA	124578304	124578860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_124578300_124578900
ES_00046345	chr5	+	5332	20	NNC	ENSMUSG00000038023.13	novel	5345	20	NA	NA	6	-5	intron_retention	FALSE	canonical	1	3	junction_9	41.2109632295183	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGTGTCTAGTTTTCTT	NA	False	NA	5	True	AATAAA	-16	NA	124767122	124801514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789274_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
ES_00046347	chr5	+	214	2	Intergenic	novelGene_3292	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTTTTTTAGATTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	125438567	125443610	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125438621_125443449
ES_00046348	chr5	+	1039	4	Intergenic	novelGene_3293	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	8.37987005998436	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAATGCTGTCATTTC	9075	False	NA	16	True	NA	NA	NA	125451192	125456623	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_125451412_125452293_125452329_125454603_125454786_125456020
ES_00046349	chr5	+	232	1	FSM	ENSMUSG00000104793.2	ENSMUST00000199788.2	2838	1	95	2511	95	-2511	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTATATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	125548655	125548887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_125548700_125548900
ES_00046350	chr5	+	3187	12	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	65850	0	65843	0	3prime_fragment	FALSE	canonical	3	43	junction_2	8.40306909693916	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	4627	False	NA	29	True	AATAAA	-17	NA	129239663	129281663	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ES_00046351	chr5	+	3358	19	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	24.9767793394753	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGGGCTCTCCTTC	NA	False	NA	13	True	AATAAA	-26	NA	129578305	129648445	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129636532_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ES_00046352	chr5	+	542	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTCAGATTCTCTGAA	775	False	NA	34	True	AGTAAA	-29	NA	129792581	129795349	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_129792614_129793790_129793931_129794979
ES_00046353	chr5	+	389	1	FSM	ENSMUSG00000034211.15	ENSMUST00000199999.2	1828	1	1379	60	1200	-60	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAACAGGATAAACTCTTA	2154	False	NA	NA	False	NA	NA	NA	129793960	129794349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129794000_129794300
ES_00046354	chr5	+	462	1	FSM	ENSMUSG00000086916.3	ENSMUST00000199631.2	3518	1	-243	3299	-243	5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTCTAAGAG	NA	False	NA	NA	False	NA	NA	NA	129804992	129805454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_129805000_129805500
ES_00046355	chr5	+	2086	15	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	515	82192	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1489.34154229036	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCACAGATATTTACATT	NA	False	NA	NA	False	NA	NA	NA	129864576	129957404	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867756_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588_129875197_129957379
ES_00046356	chr5	+	401	2	ISM	ENSMUSG00000034173.14	ENSMUST00000077320.3	730	5	3405	1330	3405	-1330	internal_fragment	FALSE	canonical	3	4561	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGCGACTTGTCCCTCTG	9465	False	NA	NA	False	NA	NA	NA	129928023	129929336	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_129928274_129929185
ES_00046358	chr5	+	202	2	Intergenic	novelGene_3306	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTTTTCTTAATGCCAT	NA	False	NA	NA	False	NA	NA	NA	129956724	129982014	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129956749_129981836
ES_00046361	chr5	+	2654	9	NIC	ENSMUSG00000025340.15	novel	2690	9	NA	NA	8	0	intron_retention	FALSE	canonical	3	67	junction_3	37.9637985454564	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTGGTTTTGTTTTGT	NA	False	NA	16	True	AATAAA	-38	NA	130200672	130243178	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_130200736_130216241_130216428_130219717_130219885_130226787_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
ES_00046363	chr5	+	3217	17	FSM	ENSMUSG00000005373.14	ENSMUST00000129008.5	3195	17	-22	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	6.16314651781053	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGGGTTGGTGTTGGTG	3407	False	NA	1	True	AATAAA	-14	NA	135135744	135166776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161934_135162031_135162105_135162263_135162397_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
ES_00046364	chr5	+	1385	6	FSM	ENSMUSG00000005374.14	ENSMUST00000005508.14	1368	6	-17	0	12	0	multi-exon	FALSE	canonical	2	7	junction_3	93.5037967143581	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATATCTCTCTCTCTGT	9502	False	NA	NA	False	NA	NA	NA	135178522	135188675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135186385_135186513_135187457_135187611_135188073
ES_00046367	chr5	+	947	4	FSM	ENSMUSG00000000916.16	ENSMUST00000124453.3	952	4	5	0	5	0	multi-exon	FALSE	canonical	1	4	junction_2	120.307938225206	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135403037	135404997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135403154_135403780_135403920_135404128_135404553_135404729
ES_00046368	chr5	+	333	2	Antisense	novelGene_ENSMUSG00000082001.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	141	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATATCAACCAACCAAGCT	5024	False	NA	NA	False	NA	NA	NA	135645834	135721866	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_+_135646015_135721713
ES_00046370	chr5	+	930	2	FSM	ENSMUSG00000004951.11	ENSMUST00000111155.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	2203	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTCTGACTCCAGAGTTAT	NA	False	NA	5	True	AATAAA	-23	NA	135916871	135918415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_135917289_135917902
ES_00046371	chr5	+	3057	20	FSM	ENSMUSG00000004952.14	ENSMUST00000135344.8	3057	20	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_7	10.66669552166	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGCTGAGGTGTTGGG	2234	False	NA	NA	False	AATAAA	-15	NA	136112851	136140709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ES_00046372	chr5	+	679	3	FSM	ENSMUSG00000004952.14	ENSMUST00000122887.2	681	3	0	2	0	-2	multi-exon	FALSE	canonical	3	73	junction_1	4.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCATGTGTACGTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	136132747	136134885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136132861_136133369_136133508_136134457
ES_00046374	chr5	+	496	3	FSM	ENSMUSG00000039771.14	ENSMUST00000111129.2	474	3	-22	0	-22	0	multi-exon	FALSE	canonical	2	3	junction_1	632.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAATGGGGCTGTGCAG	9261	False	NA	19	True	AATAAA	-8	NA	136145533	136151790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_136145660_136150942_136151118_136151595
ES_00046377	chr5	+	4784	21	Fusion	ENSMUSG00000004846.11_ENSMUSG00000087244.2	novel	3280	19	NA	NA	299	-78	intron_retention	FALSE	canonical	2	3	junction_19	54.0513413339577	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTATATGTAGAGCATCT	NA	False	NA	NA	False	NA	NA	NA	137016628	137028070	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959_137027514_137027633_137027818_137028005
ES_00046382	chr5	+	4180	23	NNC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	298.589563234764	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186433	139235550	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_139186455_139195838_139196083_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ES_00046388	chr5	+	3814	16	ISM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	-21	0	-11	0	intron_retention	FALSE	canonical	3	53	junction_8	14.7939927748469	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGAGGGCGCGGTGTCTT	8679	False	NA	4	True	AATAAA	-14	NA	142449787	142464465	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651
ES_00046399	chr5	+	2331	3	NNC	ENSMUSG00000045482.17	novel	11581	63	NA	NA	665	0	intron_retention	TRUE	canonical	0	0	junction_1	75	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTGTGCCCTATTTT	4031	False	NA	NA	False	AATAAA	-14	NA	144793057	144796586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_+_144793901_144794004_144794390_144795483
ES_00046400	chr5	+	1823	3	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	71041	0	-710	0	3prime_fragment	FALSE	canonical	3	144	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTGTGCCCTATTTT	4349	False	NA	NA	False	AATAAA	-14	NA	144793375	144796586	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_+_144793901_144794194_144794390_144795483
ES_00046411	chr5	+	5216	7	FSM	ENSMUSG00000041264.17	ENSMUST00000150921.2	5216	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	101.947154066321	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149128145	149152244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_+_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ES_00046422	chr5	+	7213	34	NIC	ENSMUSG00000034021.16	novel	6598	35	NA	NA	33	-3	combination_of_known_splicesites	FALSE	canonical	2	37	junction_28	31.2727566361149	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATTATATTTTTATGTG	NA	False	NA	-16	True	AATAAA	-13	NA	150597324	150734129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717732_150717879_150720035_150720142_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ES_00046425	chr5	-	362	1	FSM	ENSMUSG00000040464.16	ENSMUST00000198421.2	2290	1	357	1571	357	593	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAATATAGATTGAGAAA	NA	False	NA	NA	False	NA	NA	NA	5593834	5593472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_5593500_5593800
ES_00046427	chr5	-	635	1	FSM	ENSMUSG00000104663.2	ENSMUST00000197670.2	2389	1	872	882	872	-882	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTCAGCATCAACAAGTG	NA	False	NA	NA	False	NA	NA	NA	6478360	6477725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_6477700_6478400
ES_00046428	chr5	-	6135	1	ISM	ENSMUSG00000040537.18	ENSMUST00000088761.11	9077	31	289493	3	11751	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCACAGCTCTCTTTCA	NA	False	NA	-6	True	AATAAA	-16	NA	8128489	8122354	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_8122400_8128500
ES_00046429	chr5	-	1623	11	FSM	ENSMUSG00000040537.18	ENSMUST00000115385.2	2318	11	0	695	0	-695	multi-exon	FALSE	canonical	3	25	junction_1	4.77493455452533	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTTTAATTTTTATCTA	6140	False	NA	NA	False	NA	NA	NA	8418081	8195042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ES_00046430	chr5	-	713	5	FSM	ENSMUSG00000040537.18	ENSMUST00000138652.2	1620	5	0	907	0	-907	multi-exon	FALSE	canonical	0	0	junction_1	13.6656503687164	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTCTAGTATTTCAATA	6087	False	NA	NA	False	ATTAAA	-12	NA	8418134	8274733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_8274883_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ES_00046433	chr5	-	208	1	Intergenic	novelGene_3068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGCCAGCATTTATAAG	NA	False	NA	NA	False	NA	NA	NA	12895864	12895656	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_12895700_12895900
ES_00046434	chr5	-	845	1	FSM	ENSMUSG00000062038.6	ENSMUST00000078246.6	319	1	45	-571	45	571	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGTTTACCTGTATAG	NA	False	NA	NA	False	AATAAA	-27	NA	13171688	13170843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_13170800_13171700
ES_00046435	chr5	-	3261	8	NNC	ENSMUSG00000057614.7	novel	3135	8	NA	NA	-129	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	56.3458706815073	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCTATTGACTGAATTT	NA	False	NA	-7	True	AATAAA	-21	NA	18565482	18470132	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513825_18565053
ES_00046436	chr5	-	2268	7	NIC	ENSMUSG00000039987.16	novel	2000	8	NA	NA	0	434	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	87.7884135609908	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTGTAGTTTAATTT	NA	False	NA	-14	True	TTTAAA	-1	NA	21087076	20997865	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_20999480_21006899_21007065_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ES_00046437	chr5	-	3541	3	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	24976	0	24976	0	3prime_fragment	FALSE	canonical	3	114	junction_2	10.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	21881416	21867898	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_21870361_21875486_21875602_21880452
ES_00046438	chr5	-	1995	17	FSM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	0	-1	0	0	multi-exon	FALSE	canonical	2	12	junction_16	257.325297228527	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTTTCACTTGGAATTA	NA	False	NA	-11	True	AATAAA	-16	NA	21990214	21962278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988147_21989986
ES_00046439	chr5	-	2117	13	FSM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_9	41.555434863164	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	-3	True	AATAAA	-18	NA	22755302	22691482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ES_00046440	chr5	-	2028	14	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_7	154.664668762176	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755301	22691486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731449_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ES_00046441	chr5	-	571	1	FSM	ENSMUSG00000106181.2	ENSMUST00000199146.2	1159	1	913	-325	913	325	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTGCAATTACCTTCC	NA	False	NA	NA	False	NA	NA	NA	22898804	22898233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_22898200_22898800
ES_00046442	chr5	-	5487	17	NNC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	0	-998	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_15	90.8021329251136	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTATTAAACATATTTTCA	NA	False	NA	NA	False	TTTAAA	-35	NA	23880965	23709259	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23880717_23880773_23880855
ES_00046444	chr5	-	2673	12	ISM	ENSMUSG00000038295.15	ENSMUST00000059401.7	3902	14	1092	381	-416	58	3prime_fragment	FALSE	canonical	1	1	junction_11	9.5519458447736	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATCTTTGCCATGGGAAT	7069	False	NA	NA	False	NA	NA	NA	24596049	24589559	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686_24593442_24594778_24594921_24595459_24595622_24596014
ES_00046445	chr5	-	1346	10	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	0	41810	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	758.762442694975	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTCCCTGTCTGAGGTA	NA	False	NA	NA	False	NA	NA	NA	25047426	24966010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_24966044_25008245_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25027941_25028092_25047182
ES_00046447	chr5	-	1131	8	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	-199	-412	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	565.331183412675	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGTGGTTTTTAAACCA	NA	False	NA	5	True	AATAAA	-31	NA	25047821	25008232	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047622
ES_00046449	chr5	-	2519	12	ISM	ENSMUSG00000028944.15	ENSMUST00000076306.12	2838	14	86978	-5	202	1	3prime_fragment	FALSE	canonical	3	39	junction_11	38.9905688956947	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGTATATGAGTACT	NA	False	NA	-4	True	AATAAA	-24	NA	25113773	25067740	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
ES_00046450	chr5	-	1356	5	FSM	ENSMUSG00000028944.15	ENSMUST00000139698.2	2010	5	0	654	0	-654	multi-exon	FALSE	canonical	3	123	junction_4	24.6005589367396	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTTCCCATCATGTGCT	NA	False	NA	NA	False	NA	NA	NA	25113450	25081051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
ES_00046452	chr5	-	7648	16	NIC	ENSMUSG00000038056.16	novel	6443	18	NA	NA	854	3	intron_retention	FALSE	canonical	2	6	junction_5	14.7729482500955	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGCACTGTGTTCTCT	NA	False	NA	-1	True	AATAAA	-17	NA	25504219	25476792	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486658_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25500609_25503867
ES_00046453	chr5	-	1204	2	Antisense	novelGene_ENSMUSG00000105422.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTCTTTTTCTCGGCTG	NA	False	NA	NA	False	NA	NA	NA	26281167	26276230	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_26276465_26280197
ES_00046454	chr5	-	421	1	FSM	ENSMUSG00000104882.2	ENSMUST00000196173.2	421	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAAGGATTAAACTCT	NA	False	NA	NA	False	GATAAA	-43	NA	28065436	28065015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_28065000_28065400
ES_00046455	chr5	-	2987	18	NNC	ENSMUSG00000010721.16	novel	3422	18	NA	NA	-7	139	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_17	15.0406600017153	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAAATTGTTGAATTTA	NA	False	NA	-6	True	AGTAAA	-9	NA	29583335	29436977	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29569918_29570205_29583124
ES_00046457	chr5	-	1666	1	Intergenic	novelGene_3098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATATATATATGTATAT	NA	False	NA	NA	False	AATAAA	-31	NA	30245115	30243449	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_30243400_30245100
ES_00046458	chr5	-	4748	7	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	0	1014	at_least_one_novel_splicesite	FALSE	canonical	2	147	junction_1	646.59355256778	135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCACAGACTGAAAGACATT	NA	False	NA	NA	False	NA	NA	NA	30278567	30262185	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_30266126_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ES_00046462	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	89.9026684582742	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ES_00046464	chr5	-	5074	20	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	27	18	at_least_one_novel_splicesite	TRUE	canonical	3	41	junction_19	181.770090089017	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAGCAACCCATCCATA	NA	False	NA	-8	True	AATAAA	-37	NA	31337226	31313330	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31336590
ES_00046467	chr5	-	2261	4	NIC	ENSMUSG00000043059.17	novel	2228	4	NA	NA	1	0	intron_retention	FALSE	canonical	0	0	junction_3	90.2194854538395	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359558	31356324	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_31357492_31357578_31358167_31358926_31359205_31359330
ES_00046469	chr5	-	496	2	FSM	ENSMUSG00000038552.15	ENSMUST00000200845.2	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTGGTAGATTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	31451310	31450615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_31450831_31451029
ES_00046472	chr5	-	9421	10	NNC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	40.4569577711766	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTCAAGGCTATTTTG	7087	False	NA	2	True	AATAAA	-23	NA	33011566	32947166	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001771_33001909_33011436
ES_00046473	chr5	-	3291	1	FSM	ENSMUSG00000105429.2	ENSMUST00000198236.2	1062	1	-2269	40	-2269	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACAAGCCTGGCGACCT	NA	False	NA	NA	False	NA	NA	NA	32960578	32957287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_32957300_32960600
ES_00046474	chr5	-	1809	6	FSM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	234	2	-26	-2	multi-exon	FALSE	canonical	1	2	junction_2	1.4142135623731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGGGTGACCTCCCA	NA	False	NA	NA	False	AATAAA	-19	NA	33375565	33371272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33371997_33372892_33373068_33373676_33373869_33373940_33374165_33374587_33374808_33375291
ES_00046476	chr5	-	1002	8	FSM	ENSMUSG00000004642.14	ENSMUST00000075670.13	1027	8	0	25	0	-25	multi-exon	FALSE	canonical	0	0	junction_1	406.856741572836	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCTATAATGTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	33809689	33792320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_33792520_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ES_00046477	chr5	-	3872	6	FSM	ENSMUSG00000037235.14	ENSMUST00000042701.13	3872	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.57681974534503	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGGTTTCTAGTTAT	NA	False	NA	NA	False	TATAAA	-20	NA	34345054	34331230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34334494_34334941_34335105_34336153_34336269_34341657_34341688_34344672_34344773_34344853
ES_00046478	chr5	-	344	3	FSM	ENSMUSG00000059866.14	ENSMUST00000143072.2	383	3	39	0	39	0	multi-exon	FALSE	canonical	1	2	junction_2	64	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAACAGACAGTTGGAGGA	1656	False	NA	NA	False	NA	NA	NA	34658923	34656948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34657081_34658251_34658342_34658801
ES_00046479	chr5	-	900	3	FSM	ENSMUSG00000059866.14	ENSMUST00000137555.2	900	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTTTTTGATATCT	NA	False	NA	NA	False	NA	NA	NA	34671193	34658515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_34658894_34660880_34661172_34670962
ES_00046480	chr5	-	2729	19	NNC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	0	53583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.670356624271	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34817492	34742296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34742326_34795881_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ES_00046481	chr5	-	2730	19	NNC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	0	53583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.670356624271	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34817492	34742296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34742327_34795881_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ES_00046483	chr5	-	1854	13	NNC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_8	113.469036402986	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTCTTACTATTCTTT	NA	False	NA	0	True	AATAAA	-24	NA	34794484	34790985	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792872_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ES_00046489	chr5	-	1468	9	NNC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	0	2192	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	303.960292431429	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGTCAAACATTATTAGC	NA	False	NA	NA	False	NA	NA	NA	35263040	35246652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_35246688_35250322_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ES_00046490	chr5	-	432	1	FSM	ENSMUSG00000029096.16	ENSMUST00000200810.2	1080	1	17	631	17	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCGTCGTGCGTTGCA	NA	False	NA	NA	False	NA	NA	NA	35836789	35836357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_35836400_35836800
ES_00046491	chr5	-	4937	16	NIC	ENSMUSG00000029192.18	novel	2765	15	NA	NA	-31	1	combination_of_known_junctions	FALSE	canonical	2	8	junction_15	32.7743802382288	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCACTGTGTACTTTGGTT	NA	False	NA	1	True	AATAAA	-23	NA	36750651	36647946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36742125_36742181_36749302_36749487_36750501
ES_00046493	chr5	-	2014	2	FSM	ENSMUSG00000029190.20	ENSMUST00000140653.2	2014	2	0	0	0	0	multi-exon	FALSE	canonical	2	76	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTGTATTATGTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	36853368	36828742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_36830587_36853198
ES_00046494	chr5	-	3245	19	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_10	51.6278229132842	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	983	False	NA	-13	True	AATAAA	-21	NA	36987963	36964264	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973537_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
ES_00046495	chr5	-	686	5	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	2243	-5	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	96.5012953280939	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTTCCCATGTTCAAG	NA	False	NA	-18	True	AATAAA	-16	NA	36968064	36964269	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36968011
ES_00046496	chr5	-	412	5	FSM	ENSMUSG00000029127.16	ENSMUST00000123106.5	420	5	8	0	1	0	multi-exon	FALSE	canonical	2	6	junction_3	16.6188898546203	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGCCACATCATCATTCAC	NA	False	NA	NA	False	NA	NA	NA	38377767	38361148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_38361172_38363232_38363307_38367961_38368009_38373790_38373958_38377666
ES_00046497	chr5	-	208	2	Intergenic	novelGene_3117	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTATAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	38889266	38882163	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_38882319_38889213
ES_00046500	chr5	-	2774	11	FSM	ENSMUSG00000039753.17	ENSMUST00000114047.10	2762	11	0	-12	0	3	multi-exon	FALSE	canonical	0	0	junction_10	169.180495329692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTGTGATTTTATT	2824	False	NA	3	True	AATAAA	-32	NA	43978980	43901953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43978882
ES_00046501	chr5	-	2657	9	FSM	ENSMUSG00000039753.17	ENSMUST00000087465.11	4237	9	0	1580	0	400	multi-exon	FALSE	canonical	3	499	junction_1	35.8704265377483	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCACACTACCTTCAGTTT	8857	False	NA	NA	False	NA	NA	NA	43939463	43914826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ES_00046502	chr5	-	505	1	FSM	ENSMUSG00000104701.2	ENSMUST00000199304.2	1039	1	274	260	274	-260	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAATCCTAATAAATCC	NA	False	NA	NA	False	NA	NA	NA	43965811	43965306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_43965300_43965800
ES_00046503	chr5	-	616	1	FSM	ENSMUSG00000105519.2	ENSMUST00000198875.2	3459	1	-448	3291	-448	-3291	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGATGTTTGTAATGGG	NA	False	NA	NA	False	NA	NA	NA	44375049	44374433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_44374400_44375000
ES_00046504	chr5	-	1153	6	FSM	ENSMUSG00000015806.13	ENSMUST00000198258.5	1172	6	0	19	0	-12	multi-exon	FALSE	canonical	0	0	junction_4	519.057376404574	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTCAAGTCCTGACTTAC	NA	False	NA	-6	True	AATAAA	-28	NA	45607518	45591381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45604917_45605011_45607431
ES_00046505	chr5	-	399	1	FSM	ENSMUSG00000104986.2	ENSMUST00000196242.2	1007	1	506	102	506	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCAGTGAAAACACTCAA	5608	False	NA	NA	False	NA	NA	NA	45826544	45826145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45826100_45826500
ES_00046506	chr5	-	1322	1	FSM	ENSMUSG00000105457.2	ENSMUST00000200385.2	2161	1	419	420	419	-420	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCATAATCTACATATAT	NA	False	NA	NA	False	NA	NA	NA	45929103	45927781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_45927800_45929100
ES_00046507	chr5	-	215	2	FSM	ENSMUSG00000029090.13	ENSMUST00000196229.2	215	2	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTTGTGTTTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	50166846	50164258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_50164305_50166677
ES_00046508	chr5	-	1318	3	FSM	ENSMUSG00000029090.13	ENSMUST00000196915.5	396	3	-437	-485	-76	5	multi-exon	FALSE	canonical	1	1	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	50216424	50207725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_50208303_50215475_50215686_50215893
ES_00046509	chr5	-	4488	1	FSM	ENSMUSG00000106648.2	ENSMUST00000199653.2	2989	1	1634	-3133	1634	3133	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAACAA	NA	False	NA	NA	False	AATGAA	-40	NA	52298281	52293793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_52293800_52298300
ES_00046510	chr5	-	2276	2	FSM	ENSMUSG00000037999.14	ENSMUST00000160620.3	2883	2	607	0	607	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTCTTGTGTCTCTTT	NA	False	NA	3	True	ATTAAA	-24	NA	62769110	62759787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_62762000_62769046
ES_00046511	chr5	-	1463	1	FSM	ENSMUSG00000097640.8	ENSMUST00000200143.2	1460	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTCAATTGTTTTAGTT	154	False	NA	NA	False	AATAAA	-17	NA	64961179	64959716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_64959700_64961200
ES_00046512	chr5	-	1187	1	FSM	ENSMUSG00000105935.2	ENSMUST00000197871.2	1187	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	65466337	65465150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65465200_65466300
ES_00046513	chr5	-	1364	5	FSM	ENSMUSG00000037822.13	ENSMUST00000121661.8	1056	5	-308	0	32	0	multi-exon	FALSE	canonical	2	20	junction_4	163.329421721869	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650711	65607145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650283
ES_00046514	chr5	-	6977	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	110.837996749479	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGAAGTGTGGAAACGT	2641	False	NA	NA	False	AATAAA	-19	NA	65855616	65765120	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
ES_00046516	chr5	-	1508	1	FSM	ENSMUSG00000106978.2	ENSMUST00000202069.2	2008	1	159	341	159	-341	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGAATGGATGTGTTTT	7688	False	NA	NA	False	AATAAA	-31	NA	65921563	65920055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_65920100_65921600
ES_00046517	chr5	-	4939	7	NIC	ENSMUSG00000070780.12	novel	4703	7	NA	NA	-3	2	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	12.9282206389313	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGACTTTCTTTTCCTT	NA	False	NA	0	True	AATAAA	-18	NA	66308669	66173896	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308395
ES_00046518	chr5	-	4590	6	FSM	ENSMUSG00000029207.17	ENSMUST00000162955.8	4889	6	299	0	299	0	multi-exon	FALSE	canonical	3	93	junction_4	7.88923316932641	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTTAGTGTTTGTGTCT	NA	False	NA	23	True	ATTAAA	-38	NA	66470772	66456045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657
ES_00046520	chr5	-	6361	16	NIC	ENSMUSG00000029207.17	novel	6333	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_11	22.2297098496584	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGACTCCTTGATCTGA	NA	False	NA	-70	True	AATAAA	-16	NA	66776031	66456182	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557628_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ES_00046524	chr5	-	11483	64	NIC	ENSMUSG00000070733.14	novel	11340	63	NA	NA	0	131	combination_of_known_junctions	FALSE	canonical	3	9	junction_20	12.3092756312419	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTGTGGTATTTTAAG	NA	False	NA	0	True	AATAAA	-18	NA	73413932	73177533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281_73222890_73224616_73224712_73226066_73226255_73227225_73227348_73228447_73228653_73230078_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73272598_73272644_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ES_00046525	chr5	-	11336	64	NIC	ENSMUSG00000070733.14	novel	11340	63	NA	NA	14	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_22	12.0369800568452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTGTCCTTTAAATTAT	NA	False	NA	-2	True	GATAAA	-29	NA	73413918	73177666	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281_73222890_73224616_73224712_73226066_73226258_73227225_73227348_73228447_73228650_73230078_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73272598_73272644_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ES_00046527	chr5	-	1464	9	NNC	ENSMUSG00000062110.15	novel	3672	9	NA	NA	8955	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	20.0058585169445	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAAGCTGTCGCTAGC	NA	False	NA	-3	True	AATAAA	-25	NA	74683435	74366749	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74683402
ES_00046528	chr5	-	428	1	FSM	ENSMUSG00000107205.2	ENSMUST00000202336.2	2846	1	2403	15	2403	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATTTTGTTTCCAAAAA	NA	False	NA	NA	False	NA	NA	NA	75181339	75180911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_75180900_75181300
ES_00046529	chr5	-	526	1	FSM	ENSMUSG00000107020.2	ENSMUST00000201529.2	352	1	-96	-78	-96	78	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCCTCCACACAGACCTA	9782	False	NA	NA	False	NA	NA	NA	76221519	76220993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_76221000_76221500
ES_00046530	chr5	-	7350	23	NIC	ENSMUSG00000029238.12	novel	9744	23	NA	NA	41	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	11.4989219760624	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGCATATTTTTTCC	NA	False	NA	0	True	ATTAAA	-20	NA	76452560	76360026	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_76364726_76374779_76375075_76377204_76377408_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452501
ES_00046531	chr5	-	459	1	FSM	ENSMUSG00000106831.2	ENSMUST00000201768.2	459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGATCAGATCATCGAGTG	NA	False	NA	NA	False	NA	NA	NA	76380917	76380458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_76380500_76380900
ES_00046532	chr5	-	742	4	NNC	ENSMUSG00000029238.12	novel	2287	3	NA	NA	69	2865	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	15.3260852434302	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCTGTATACTTGGAATT	NA	False	NA	NA	False	AATAAA	-21	NA	76452326	76416935	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_76417402_76421805_76421891_76451270_76451350_76452214
ES_00046533	chr5	-	3407	12	NNC	ENSMUSG00000029246.15	novel	4158	12	NA	NA	133	48917	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.386133127781	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	77098879	77012178	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_77012207_77061178_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ES_00046534	chr5	-	3697	17	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	24	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_16	23.6798305526032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053310	77023781	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
ES_00046535	chr5	-	1256	6	ISM	ENSMUSG00000055923.17	ENSMUST00000146570.8	2264	13	12	13286	12	139	5prime_fragment	FALSE	canonical	3	18	junction_5	32.6521055982612	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053322	77043949	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
ES_00046536	chr5	-	235	2	Intergenic	novelGene_3146	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1090	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTATGATACAAAATATCAC	NA	False	NA	NA	False	AATACA	-38	NA	77358741	77289677	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_77289862_77358690
ES_00046539	chr5	-	639	2	FSM	ENSMUSG00000036285.11	ENSMUST00000150451.2	577	2	0	-62	0	62	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGGGGGGGGAGTG	NA	False	NA	NA	False	NA	NA	NA	77452162	77451163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_77451673_77452032
ES_00046540	chr5	-	718	3	Antisense	novelGene_ENSMUSG00000037605.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	3.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCTCATTTATGTCGTA	NA	False	NA	NA	False	NA	NA	NA	81703952	81701726	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_81702330_81703680_81703745_81703901
ES_00046541	chr5	-	235	2	Intergenic	novelGene_3159	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAGAGGCAGCACGAAGA	NA	False	NA	NA	False	NA	NA	NA	89916809	89837961	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_89838186_89916798
ES_00046543	chr5	-	2616	2	FSM	ENSMUSG00000055204.16	ENSMUST00000196919.2	3182	2	566	0	566	0	multi-exon	FALSE	canonical	3	202	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCTAAGGTTGATAATAA	NA	False	NA	NA	False	ACTAAA	-12	NA	90379757	90375677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_90377201_90378664
ES_00046544	chr5	-	4309	25	ISM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	263	24895	220	-4	5prime_fragment	FALSE	canonical	1	45	junction_24	31.0563723555873	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTAATTTTTCGTGATT	NA	False	NA	-8	True	AATAAA	-10	NA	90513824	90401218	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ES_00046545	chr5	-	1452	1	FSM	ENSMUSG00000106917.2	ENSMUST00000202613.2	880	1	-97	-475	-97	475	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTTAAAGAACAAAGCAAG	NA	False	NA	NA	False	AATAAA	-17	NA	91909531	91908079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_91908100_91909500
ES_00046546	chr5	-	243	3	Antisense	novelGene_ENSMUSG00002076272.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	238.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTTTAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	92603139	92528000	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_92528134_92543520_92543565_92603073
ES_00046548	chr5	-	3363	10	FSM	ENSMUSG00000050050.18	ENSMUST00000150359.2	3353	10	0	-10	0	10	multi-exon	FALSE	canonical	1	1	junction_4	1.68508343201146	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTGGTCATGTTTTCC	NA	False	NA	NA	False	AATAAA	-19	NA	92823130	92799902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_92802032_92805727_92805843_92807541_92807653_92809391_92809469_92809783_92810112_92810491_92810602_92814539_92814758_92816530_92816668_92820531_92820576_92823036
ES_00046549	chr5	-	1883	4	NNC	ENSMUSG00000063015.13	novel	2804	7	NA	NA	0	11496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.864418363424	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCAAAAAAACAAAACAGGT	NA	False	NA	NA	False	AATAAA	-34	NA	93336079	93318295	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_93318323_93329795_93331280_93335446_93335678_93335938
ES_00046550	chr5	-	2761	8	NNC	ENSMUSG00000063015.13	novel	2804	7	NA	NA	0	11496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.970763797365	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCAAAAAAACAAAACAGGT	NA	False	NA	NA	False	AATAAA	-34	NA	93354287	93318295	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_93318324_93329795_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
ES_00046551	chr5	-	233	1	FSM	ENSMUSG00000053208.11	ENSMUST00000128468.2	2490	1	2297	-40	2297	40	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGATTTAGGTTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	93538653	93538420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_93538400_93538700
ES_00046552	chr5	-	3229	20	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	163	junction_5	162.529434794179	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	NA	False	NA	-7	True	ATTAAA	-19	NA	100543760	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660
ES_00046553	chr5	-	4390	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	53	junction_26	174.664111296935	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8107	False	NA	-7	True	ATTAAA	-19	NA	100564094	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563761
ES_00046554	chr5	-	4122	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	2	64	junction_13	176.439469507251	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8097	False	NA	-7	True	ATTAAA	-19	NA	100564104	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ES_00046555	chr5	-	4176	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	2	48	junction_14	262.330344413299	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8097	False	NA	-7	True	ATTAAA	-19	NA	100564104	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ES_00046556	chr5	-	4084	25	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	2	48	junction_13	182.154238673347	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8096	False	NA	-7	True	ATTAAA	-19	NA	100564105	100509507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ES_00046557	chr5	-	1232	3	ISM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	12	37887	12	4413	5prime_fragment	FALSE	canonical	3	163	junction_1	22.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAGAATAGTTATAGCT	NA	False	NA	NA	False	NA	NA	NA	100648481	100627786	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_100628181_100632998_100633715_100648359
ES_00046558	chr5	-	704	5	FSM	ENSMUSG00000029322.13	ENSMUST00000031264.12	744	5	37	3	-16	-1	multi-exon	TRUE	canonical	1	1	junction_1	0.82915619758885	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTTTTGTTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100720074	100701593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100701855_100704345_100704462_100707617_100707743_100710490_100710629_100720010
ES_00046559	chr5	-	1043	6	FSM	ENSMUSG00000029319.9	ENSMUST00000135146.2	1043	6	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_5	133.431630432967	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCATCGAGCGGCATAGTA	NA	False	NA	NA	False	NA	NA	NA	100822022	100803120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811695_100821854
ES_00046561	chr5	-	1399	2	FSM	ENSMUSG00000035266.17	ENSMUST00000139203.2	984	2	-359	-56	-359	50	multi-exon	FALSE	canonical	3	93	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAACCCATTTCTCCTAG	2883	False	NA	55	True	NA	NA	NA	100913663	100909960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_100910503_100912806
ES_00046563	chr5	-	200	1	Intergenic	novelGene_3183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	841	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGTTTGGGGGCTGGGC	5634	False	NA	NA	False	NA	NA	NA	103789553	103789353	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_103789400_103789600
ES_00046564	chr5	-	220	2	Antisense	novelGene_ENSMUSG00000029313.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTAGTCATATTTAAAAT	NA	False	NA	NA	False	AAAAAG	-27	NA	103899977	103845909	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_103845926_103899773
ES_00046565	chr5	-	3185	10	NNC	ENSMUSG00000029312.13	novel	3193	10	NA	NA	52	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	39.6851808644853	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACTACTAGTCTTTTCA	NA	False	NA	NA	False	AATAAA	-28	NA	104059073	104009933	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058919
ES_00046566	chr5	-	2798	3	Intergenic	novelGene_3190	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGTTACATGAATCGT	NA	False	NA	NA	False	NA	NA	NA	104792968	104787601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_104788018_104789952_104790445_104791078
ES_00046567	chr5	-	461	2	FSM	ENSMUSG00000099061.2	ENSMUST00000124394.3	449	2	-11	-1	-11	1	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTACGGTTCTGTGTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	106722595	106705603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106705923_106722453
ES_00046568	chr5	-	5588	7	FSM	ENSMUSG00000049606.17	ENSMUST00000045466.14	5569	7	0	-19	0	17	multi-exon	FALSE	canonical	3	8	junction_6	43.3346153656507	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTTATTTTTTTTATT	NA	False	NA	3	True	AATAAA	-36	NA	106843841	106764587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106784190_106784282_106786502_106814650_106814712_106843663
ES_00046569	chr5	-	6077	8	NNC	ENSMUSG00000049606.17	novel	5569	7	NA	NA	0	17	intron_retention	FALSE	canonical	2	6	junction_6	47.4965090016828	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTTATTTTTTTTATT	NA	False	NA	3	True	AATAAA	-36	NA	106844032	106764587	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106838595_106838744_106843508_106843566_106843663
ES_00046570	chr5	-	5700	6	NIC	ENSMUSG00000049606.17	novel	5569	7	NA	NA	13	12	intron_retention	FALSE	canonical	3	8	junction_5	39.6333193159493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACATTTGTTATTTTTT	NA	False	NA	-2	True	AATAAA	-31	NA	106843865	106764592	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106843663
ES_00046571	chr5	-	5685	5	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	26	12	intron_retention	FALSE	canonical	3	15	junction_4	41.2492424172857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACATTTGTTATTTTTT	NA	False	NA	-2	True	AATAAA	-31	NA	106844645	106764592	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106844397
ES_00046573	chr5	-	423	1	FSM	ENSMUSG00000096920.2	ENSMUST00000180714.2	422	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACGAATGCTGGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	108203782	108203359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108203400_108203800
ES_00046574	chr5	-	500	1	FSM	ENSMUSG00000106103.2	ENSMUST00000199082.2	1380	1	545	335	545	-335	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGAGAAACCCTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	108460070	108459570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_108459600_108460100
ES_00046575	chr5	-	4329	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	74	1	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_24	67.8198614543096	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGGCTTGTAAAGCACT	NA	False	NA	-27	True	ATTAAA	-24	NA	108777485	108717278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764913_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ES_00046576	chr5	-	201	1	Intergenic	novelGene_3212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAAATGAAGTACTTTAT	NA	False	NA	NA	False	NA	NA	NA	108838532	108838331	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_108838300_108838500
ES_00046577	chr5	-	1075	5	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	-86	1623	intron_retention	FALSE	canonical	1	1	junction_2	27.1569512280005	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCGGGACACGCAGTAAG	NA	False	NA	NA	False	AATAAA	-21	NA	109702108	109698134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109698395_109699328_109699783_109700490_109700560_109700929_109701046_109701932
ES_00046578	chr5	-	1297	8	NIC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	1	13	junction_3	239.297611644528	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706796	109702574	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_109702937_109703138_109703224_109703372_109703527_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
ES_00046579	chr5	-	1629	7	NIC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	-288	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_6	213.427127818581	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109707147	109702574	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_109702937_109703138_109703224_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
ES_00046580	chr5	-	2009	8	NNC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	-288	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	241.788235901601	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109707147	109702574	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703625_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
ES_00046581	chr5	-	2780	4	Fusion	ENSMUSG00000072762.10_ENSMUSG00000105471.2	novel	2001	4	NA	NA	-191	475	multi-exon	FALSE	canonical	3	57	junction_1	63.0678646820673	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	109944355	109883380	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_109885666_109932961_109933023_109933207_109933335_109944048
ES_00046582	chr5	-	602	2	FSM	ENSMUSG00000097863.2	ENSMUST00000181488.2	589	2	-6	-7	-6	7	multi-exon	FALSE	canonical	2	4	junction_1	0	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTTGTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	110144270	110143369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110143686_110143984
ES_00046583	chr5	-	823	2	NNC	ENSMUSG00000109771.2	novel	3457	3	NA	NA	3885	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	-2	True	AATAAA	-15	NA	110238382	110224000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110224622_110238180
ES_00046584	chr5	-	1486	7	FSM	ENSMUSG00000033434.16	ENSMUST00000127628.6	1481	7	0	-5	0	1	multi-exon	FALSE	canonical	3	206	junction_1	14.1234635349203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGTTTTGTATAGGTG	NA	False	NA	-3	True	ATTAAA	-29	NA	110255068	110251839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518
ES_00046585	chr5	-	213	1	FSM	ENSMUSG00000104970.2	ENSMUST00000198052.2	594	1	-4	385	-4	-385	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTCCTGATTAACGCGAG	8102	False	NA	NA	False	NA	NA	NA	110379071	110378858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110378900_110379100
ES_00046587	chr5	-	1911	11	FSM	ENSMUSG00000029503.17	ENSMUST00000195985.5	2096	11	184	1	-52	0	multi-exon	FALSE	canonical	1	1	junction_9	1.9723082923316	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTCTCAATTCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	110490894	110487678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_110488449_110488533_110488600_110488721_110488816_110488966_110489098_110489416_110489556_110489639_110489721_110489870_110489968_110490043_110490120_110490198_110490271_110490365_110490502_110490645
ES_00046588	chr5	-	4381	19	NNC	ENSMUSG00000043323.18	novel	4720	19	NA	NA	-4430	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	42.9682986788868	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCCAGTGTTTTGTTTG	NA	False	NA	3	True	GATAAA	-24	NA	110585617	110509615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110584479_110584595_110585382
ES_00046589	chr5	-	4582	17	NIC	ENSMUSG00000043323.18	novel	4720	19	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	75.5918057315077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCCAGTGTTTTGTTT	NA	False	NA	2	True	GATAAA	-23	NA	110596369	110509616	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110595745
ES_00046590	chr5	-	4601	18	NNC	ENSMUSG00000043323.18	novel	4720	19	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_9	75.3198944847264	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTCCAGTGTTTTGT	NA	False	NA	0	True	GATAAA	-21	NA	110596369	110509618	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110526196_110526364_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110595745
ES_00046591	chr5	-	2847	5	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4430	6864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.200737099625	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAGGCATAGAGTGACTG	NA	False	NA	NA	False	NA	NA	NA	110585617	110570876	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110570905_110577743_110580012_110580766_110580968_110584479_110584595_110585382
ES_00046592	chr5	-	3219	5	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	0	6864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	242.030344171965	118	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAGGCATAGAGTGACTG	NA	False	NA	NA	False	NA	NA	NA	110596352	110570876	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_110570905_110577743_110580012_110580766_110580968_110584479_110584595_110595745
ES_00046595	chr5	-	871	5	FSM	ENSMUSG00000029346.13	ENSMUST00000155756.8	871	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	40.1154583670684	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112487888	112485257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762
ES_00046596	chr5	-	1171	7	NIC	ENSMUSG00000029346.13	novel	1110	7	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.7466473988403	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCAGCTTGGTTTACAGT	NA	False	NA	-12	True	AATAGA	-9	NA	112490877	112485262	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_112485608_112485841_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ES_00046598	chr5	-	2539	3	FSM	ENSMUSG00000029348.12	ENSMUST00000031291.9	2678	3	0	139	0	-139	multi-exon	FALSE	canonical	3	26	junction_1	1.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGATGGAAGCATCAGGC	NA	False	NA	NA	False	NA	NA	NA	112540079	112532358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_112533728_112534624_112534739_112539023
ES_00046599	chr5	-	1322	2	FSM	ENSMUSG00000029348.12	ENSMUST00000200227.2	1322	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCAGAAGCACGATGTGG	NA	False	NA	NA	False	NA	NA	NA	112541890	112539364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_112540122_112541325
ES_00046601	chr5	-	6503	22	NNC	ENSMUSG00000042249.12	novel	6533	21	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.6632649961753	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTGAGGCTGACATCTC	550	False	NA	-2	True	AATAAA	-20	NA	113163369	113058345	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_113061361_113061381_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
ES_00046602	chr5	-	10113	12	NNC	ENSMUSG00000051339.11	novel	10238	13	NA	NA	-37	-12	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_11	7.20192811648668	64	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTGGTAACTCTGAGG	NA	False	NA	-10	True	AATAAA	-8	NA	113369139	113234200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469_113340063_113369076
ES_00046604	chr5	-	953	6	NNC	ENSMUSG00000042216.14	novel	2274	18	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	27.2176413379264	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGAGTGGTGTCTGTCCA	NA	False	NA	NA	False	ATTAAA	-19	NA	113428459	113421816	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113428416
ES_00046605	chr5	-	2882	3	FSM	ENSMUSG00000042190.13	ENSMUST00000047936.13	2882	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	3	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGCTTGTTGTTTTCA	NA	False	NA	0	True	NA	NA	NA	113788487	113750414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_113753002_113754588_113754678_113788281
ES_00046608	chr5	-	270	1	Genic_Genomic	ENSMUSG00000042078.15	novel	NA	NA	NA	NA	-39	-10454	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCCCTTCTCTCCTCCCC	NA	False	NA	NA	False	AATACA	-12	NA	114203318	114203048	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_114203000_114203300
ES_00046609	chr5	-	4685	21	NNC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.56955551961	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCATGTGCCCCCTCTAGT	NA	False	NA	-4	True	AATAAA	-19	NA	114911523	114865468	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_114866961_114867423_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ES_00046610	chr5	-	628	1	FSM	ENSMUSG00000092183.2	ENSMUST00000173208.2	1247	1	530	89	530	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCCGTGCTTCTAAGGC	9652	False	NA	NA	False	ATTAAA	-2	NA	114912514	114911886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_114911900_114912500
ES_00046611	chr5	-	1650	10	NNC	ENSMUSG00000029556.13	novel	3191	10	NA	NA	-2256	-73	at_least_one_novel_splicesite	TRUE	canonical	1	6	junction_9	4.34897462017354	136	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCTGCCATCCAACC	7902	False	NA	NA	False	NA	NA	NA	115111409	115088192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115111247
ES_00046616	chr5	-	249	1	FSM	ENSMUSG00000081282.3	ENSMUST00000121159.3	501	1	22	230	22	-230	mono-exon	FALSE	NA	NA	NA	NA	NA	449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAAATTCCTCTGCGGGT	1312	False	NA	NA	False	NA	NA	NA	115630492	115630243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115630200_115630500
ES_00046617	chr5	-	1574	3	FSM	ENSMUSG00000041609.17	ENSMUST00000121746.8	1568	3	0	-6	0	1	multi-exon	FALSE	canonical	0	0	junction_2	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCTCAGTTCCTGGG	NA	False	NA	0	True	AATAAA	-17	NA	115791040	115786232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_115787629_115789877_115789999_115790983
ES_00046618	chr5	-	6467	5	FSM	ENSMUSG00000063919.12	ENSMUST00000150127.2	6555	5	0	88	0	-87	multi-exon	FALSE	canonical	0	0	junction_2	0.866025403784439	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAAAAAAACCTCATTT	NA	False	NA	NA	False	NA	NA	NA	116591972	116577421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_116582934_116584548_116584684_116585312_116585424_116587482_116587687_116591467
ES_00046619	chr5	-	519	1	FSM	ENSMUSG00000107369.2	ENSMUST00000201478.2	657	1	260	-122	260	122	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCAGCTTTGTCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	116771363	116770844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_116770800_116771400
ES_00046620	chr5	-	371	1	FSM	ENSMUSG00000106829.2	ENSMUST00000202659.2	378	1	38	-31	38	31	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTATTTTAGAGCACAA	NA	False	NA	NA	False	NA	NA	NA	117432433	117432062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117432100_117432400
ES_00046621	chr5	-	436	1	FSM	ENSMUSG00000072688.3	ENSMUST00000202768.2	748	1	239	73	237	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	712	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGGATTCTATCTC	NA	False	NA	NA	False	NA	NA	NA	117457070	117456634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_117456600_117457100
ES_00046624	chr5	-	750	3	FSM	ENSMUSG00000029600.11	ENSMUST00000136070.8	870	3	19	101	0	-101	multi-exon	FALSE	canonical	3	6	junction_1	35.5	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGTGTGGTTTGAAACG	6334	False	NA	NA	False	NA	NA	NA	120750635	120745207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120745309_120749442_120749795_120750338
ES_00046625	chr5	-	2840	9	NNC	ENSMUSG00000029603.16	novel	4035	10	NA	NA	-584	20	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	41.4123698307643	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGTGCTGGGTGACTGT	NA	False	NA	2	True	AATAAA	-36	NA	120834052	120818246	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120833903
ES_00046626	chr5	-	1831	1	FSM	ENSMUSG00000029603.16	ENSMUST00000201264.2	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACCAGTCCCACTGTGGG	NA	False	NA	-65	True	TTTAAA	-40	NA	120820144	120818313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120818300_120820100
ES_00046627	chr5	-	3836	11	FSM	ENSMUSG00000032690.17	ENSMUST00000053909.13	3869	11	33	0	33	0	multi-exon	FALSE	canonical	0	0	junction_2	0.8	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGACTGTCCTGGAACT	5274	False	NA	NA	False	NA	NA	NA	120887885	120868397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120870024_120871478_120871633_120873044_120873284_120874061_120874250_120876359_120876643_120876734_120876909_120879213_120879359_120881109_120881349_120883741_120883921_120886602_120886850_120887523
ES_00046628	chr5	-	278	1	FSM	ENSMUSG00002076672.1	ENSMUST00020182677.1	126	1	-153	1	-153	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTTTCTCCCCATTTTA	NA	False	NA	NA	False	NA	NA	NA	120990512	120990234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_120990200_120990500
ES_00046629	chr5	-	1460	8	Fusion	ENSMUSG00000052776.11_ENSMUSG00000066861.15	novel	1489	7	NA	NA	-690	0	multi-exon	FALSE	canonical	1	2	junction_7	223.666114134987	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121046274	121014784	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr5_-_121015091_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356_121045575_121046226
ES_00046631	chr5	-	2759	15	NNC	ENSMUSG00000029454.16	novel	1513	14	NA	NA	-19	536	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	64.1970817570585	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCCCTTGACTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	121683987	121662564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121663303_121663725_121663831_121664807_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227_121683715_121683738
ES_00046633	chr5	-	3748	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_1	13.7846483061999	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTCTTGATCATGATG	NA	False	NA	1	True	NA	NA	NA	121757001	121734836	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
ES_00046634	chr5	-	1537	3	FSM	ENSMUSG00000042589.19	ENSMUST00000197179.2	1560	3	23	0	23	0	multi-exon	FALSE	canonical	3	12	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAACTCCAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	122004103	121998370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_121999445_122002709_122002984_122003914
ES_00046635	chr5	-	3205	13	NIC	ENSMUSG00000038593.19	novel	5717	14	NA	NA	-10	56	combination_of_known_junctions	FALSE	canonical	2	16	junction_7	6.40095478989051	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGCTGGCTGTATAACT	NA	False	NA	NA	False	NA	NA	NA	122402488	122379293	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
ES_00046636	chr5	-	2314	13	FSM	ENSMUSG00000038569.14	ENSMUST00000117263.8	2371	13	57	0	45	0	multi-exon	FALSE	canonical	2	3	junction_11	5.93190525885234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGCTTACATTGCTT	9980	False	NA	NA	False	TATAAA	-21	NA	122492238	122461285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122462288_122463413_122463528_122463943_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490608_122490678_122492201
ES_00046637	chr5	-	1742	1	FSM	ENSMUSG00000038569.14	ENSMUST00000200653.2	1726	1	45	-61	45	61	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCAACCTGGTCCACAG	9980	False	NA	NA	False	NA	NA	NA	122492238	122490496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122490500_122492200
ES_00046638	chr5	-	867	1	FSM	ENSMUSG00000079906.3	ENSMUST00000116022.3	320	1	-82	-465	-82	465	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGAAAGAAAGGACACGG	NA	False	NA	NA	False	NA	NA	NA	122577060	122576193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122576200_122577100
ES_00046639	chr5	-	2827	18	NIC	ENSMUSG00000029469.15	novel	2950	19	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_16	14.5402436403627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCTCTTTTTACTTCA	1260	False	NA	NA	False	ATTAAA	-18	NA	122752564	122688268	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122749005_122749171_122752500
ES_00046640	chr5	-	1680	1	FSM	ENSMUSG00000029469.15	ENSMUST00000196544.2	2445	1	1016	-251	1016	251	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGTCTGACTTTGCTGGG	9408	False	NA	NA	False	NA	NA	NA	122744416	122742736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_122742700_122744400
ES_00046641	chr5	-	4675	15	NIC	ENSMUSG00000029471.14	novel	2751	16	NA	NA	16	2	intron_retention	TRUE	canonical	3	5	junction_2	23.9604265574786	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGGCCTCTCGGGGGTTCT	4666	False	NA	-23	True	AATAAA	-24	NA	122917429	122869230	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_122872309_122875495_122875597_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ES_00046643	chr5	-	497	2	Antisense	novelGene_ENSMUSG00000105107.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATGAGCCATGTCTGT	4412	False	NA	NA	False	NA	NA	NA	123178305	123168915	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_123169303_123178195
ES_00046644	chr5	-	1168	5	NNC	ENSMUSG00000090086.8	novel	848	5	NA	NA	229	68	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	0.82915619758885	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGATTGGTTCAGGTTT	NA	False	NA	69	True	GGGGCT	-13	NA	123279500	123271717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_123272491_123272686_123272781_123276017_123276130_123277931_123278037_123279416
ES_00046645	chr5	-	880	2	FSM	ENSMUSG00000104606.2	ENSMUST00000195921.2	2162	2	612	670	612	-670	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGTACAGTTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	123329039	123327433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123328298_123329023
ES_00046646	chr5	-	1663	5	FSM	ENSMUSG00000029433.17	ENSMUST00000139398.8	1663	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	57.6649807075317	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8956	False	NA	-12	True	AATAAA	-25	NA	123662205	123649767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_123650771_123655799_123656129_123658103_123658236_123661317_123661445_123662133
ES_00046655	chr5	-	8853	49	NNC	ENSMUSG00000029478.17	novel	8661	48	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_34	22.4167344329831	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGTTTCTACTCTGCTTC	NA	False	NA	-7	True	AATATA	-10	NA	125256244	125094225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146139_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ES_00046658	chr5	-	202	2	Intergenic	novelGene_3289	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAGAAGCCTTTTGTGG	7932	False	NA	NA	False	NA	NA	NA	125319783	125295707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_125295866_125319739
ES_00046659	chr5	-	270	3	FSM	ENSMUSG00000037936.16	ENSMUST00000137783.3	358	3	88	0	88	0	multi-exon	FALSE	canonical	1	3	junction_2	294	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACGACACCGTGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	125416984	125380252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_125380288_125381258_125381417_125416907
ES_00046660	chr5	-	2388	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	458	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434651_125463034_125465329_125466760
ES_00046661	chr5	-	1476	4	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	431.806541044585	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434651_125463034_125464138_125465049_125465329_125466760
ES_00046662	chr5	-	1704	4	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	431.806541044585	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434651_125463034_125463910_125464593_125465329_125466760
ES_00046663	chr5	-	1932	5	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.639634933273	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434651_125463034_125464366_125464593_125464822_125465049_125465329_125466760
ES_00046664	chr5	-	2160	4	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	431.806541044585	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434651_125463034_125463682_125463909_125465329_125466760
ES_00046666	chr5	-	1703	5	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.639634933273	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434658_125463042_125464366_125464593_125464647_125465102_125465329_125466760
ES_00046668	chr5	-	1932	4	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2766.14003019852	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434651_125463034_125464138_125464593_125465329_125466760
ES_00046669	chr5	-	1027	5	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	259	28413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.639634933273	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAGAAAGTGACCAGGG	NA	False	NA	NA	False	NA	NA	NA	125466819	125434615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_125434656_125463032_125463279_125463506_125463735_125464874_125465329_125466760
ES_00046670	chr5	-	244	2	Antisense	novelGene_ENSMUSG00002076951.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	125561428	125546630	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_125546670_125561223
ES_00046671	chr5	-	203	2	Antisense	novelGene_ENSMUSG00000029482.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTAGGCCAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	125566427	125564623	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr5_-_125564649_125566249
ES_00046672	chr5	-	2373	7	FSM	ENSMUSG00000029416.18	ENSMUST00000124569.8	2370	7	0	-3	0	0	multi-exon	FALSE	canonical	0	0	junction_5	43.0803512829998	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGCTTCCTGATGGTT	NA	False	NA	-5	True	TATAAA	-18	NA	127694290	127672727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127685835_127686126_127693878
ES_00046673	chr5	-	409	1	Intergenic	novelGene_3297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTGACATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	128032448	128032039	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_128032000_128032400
ES_00046674	chr5	-	424	2	Intergenic	novelGene_3298	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTGACATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	128090688	128032039	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_-_128032435_128090659
ES_00046675	chr5	-	677	2	FSM	ENSMUSG00000034310.9	ENSMUST00000200136.2	742	2	65	0	3	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGGGAATCCCGTGGAA	NA	False	NA	NA	False	NA	NA	NA	128352878	128345868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_128346442_128352774
ES_00046676	chr5	-	370	3	FSM	ENSMUSG00000072591.11	ENSMUST00000126472.2	370	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGGTGGTGGAGGTAT	NA	False	NA	NA	False	NA	NA	NA	128677718	128661243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_128661361_128662335_128662471_128677600
ES_00046677	chr5	-	1127	8	FSM	ENSMUSG00000029428.14	ENSMUST00000151712.6	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	6.09449400220044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTAGCCATGTAAGTGTA	NA	False	NA	NA	False	AATAAA	-19	NA	129085613	129067704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
ES_00046678	chr5	-	602	2	Genic_Genomic	ENSMUSG00000060419.9	novel	441	1	NA	NA	-55	48689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACGCCACCACCACCTG	NA	False	NA	NA	False	NA	NA	NA	129205636	129156451	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr5_-_129156476_129205058
ES_00046679	chr5	-	692	5	NNC	ENSMUSG00000025537.13	novel	779	5	NA	NA	459	588	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	6.75925291729789	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129898469	129894482	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_129894598_129894757_129894912_129895036_129895128_129895702_129895867_129898301
ES_00046680	chr5	-	960	1	FSM	ENSMUSG00000025537.13	ENSMUST00000200832.2	2119	1	644	515	644	-515	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTTCAAGTGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	129900174	129899214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_129899200_129900200
ES_00046681	chr5	-	430	1	FSM	ENSMUSG00000094092.2	ENSMUST00000119542.2	483	1	39	14	39	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCATGGCCTAATGTACA	8582	False	NA	NA	False	NA	NA	NA	130237364	130236934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_130236900_130237400
ES_00046683	chr5	-	3929	33	NNC	ENSMUSG00000060261.17	novel	4455	35	NA	NA	0	45621	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.285907020362	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGCAAAAAAGGGGGAGC	NA	False	NA	NA	False	NA	NA	NA	134324412	134221066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134221094_134266687_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363
ES_00046684	chr5	-	4238	32	NIC	ENSMUSG00000060261.17	novel	4455	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_23	87.7984282082411	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTCTTTTCCTGCTGTC	661	False	NA	-3	True	AATAAA	-31	NA	134343574	134266687	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00046685	chr5	-	4229	32	NIC	ENSMUSG00000060261.17	novel	4302	33	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_24	100.848295831473	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTCTTTTCCTGCTGTC	661	False	NA	-3	True	AATAAA	-31	NA	134343574	134266687	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00046686	chr5	-	3987	33	NIC	ENSMUSG00000060261.17	novel	4021	33	NA	NA	153	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_32	101.285907020362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	1156	False	NA	-11	True	AATAAA	-23	NA	134343079	134266695	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343041
ES_00046687	chr5	-	4179	34	NNC	ENSMUSG00000060261.17	novel	4375	34	NA	NA	124	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_25	120.222841758298	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	829	False	NA	-11	True	AATAAA	-23	NA	134343406	134266695	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134305225_134305286_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00046688	chr5	-	4114	31	FSM	ENSMUSG00000060261.17	ENSMUST00000172715.8	4114	31	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_23	92.6270238945177	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	699	False	NA	-11	True	AATAAA	-23	NA	134343536	134266695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00046689	chr5	-	4249	33	NIC	ENSMUSG00000060261.17	novel	4375	34	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	196	junction_23	67.772417589588	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	699	False	NA	-11	True	AATAAA	-23	NA	134343536	134266695	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ES_00046690	chr5	-	3586	31	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	59.5236274282929	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTTTTTTTTCCCCTTT	NA	False	NA	NA	False	AGTAAA	-23	NA	134485570	134386507	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395750_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ES_00046693	chr5	-	388	4	FSM	ENSMUSG00000040751.13	ENSMUST00000201832.2	467	4	0	79	0	-79	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGCCTAGCCCATAGCC	2523	False	NA	NA	False	NA	NA	NA	134637020	134634975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_134635247_134635413_134635475_134635631_134635676_134637008
ES_00046694	chr5	-	1348	13	NNC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	-29	53414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	290.243898873574	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGACGCCAAGCCAGGT	NA	False	NA	NA	False	NA	NA	NA	135092973	135028396	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_135028431_135081813_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
ES_00046697	chr5	-	475	1	FSM	ENSMUSG00000088008.3	ENSMUST00000157383.3	129	1	3	-349	3	349	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCCCACACAAGAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	135082967	135082492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135082500_135083000
ES_00046698	chr5	-	1292	2	FSM	ENSMUSG00000043614.14	ENSMUST00000076203.3	1286	2	0	-6	0	3	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCCGCCTCCTCTCTGCT	NA	False	NA	1	True	NA	NA	NA	135107120	135101750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135102838_135106915
ES_00046699	chr5	-	8035	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-180	1	intron_retention	FALSE	canonical	2	120	junction_15	37.0834044943137	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCTGGTGATAAAGGGC	9430	False	NA	-1	True	AATAAA	-21	NA	135518292	135435387	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ES_00046701	chr5	-	2231	8	ISM	ENSMUSG00000029699.14	ENSMUST00000111152.8	2745	11	6454	-3	-123	3	3prime_fragment	FALSE	canonical	1	2	junction_4	4.56696210375594	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAACTGAGGTCATTGTT	NA	False	NA	-4	True	AATAAA	-19	NA	135996897	135989073	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr5_-_135990063_135990742_135990821_135991776_135992089_135992209_135992285_135993472_135993551_135994424_135994740_135994928_135995007_135996591
ES_00046702	chr5	-	498	4	FSM	ENSMUSG00000029699.14	ENSMUST00000153823.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGAGCCCGTGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	135994728	135992065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_135992089_135992209_135992303_135993472_135993551_135994424
ES_00046703	chr5	-	2132	16	NNC	ENSMUSG00000029703.11	novel	2473	15	NA	NA	0	23181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.3469454151521	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTATCTAAAATTTAATT	6757	False	NA	NA	False	NA	NA	NA	136164855	136128444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_136128473_136151921_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
ES_00046704	chr5	-	946	7	NNC	ENSMUSG00000039737.12	novel	3893	6	NA	NA	-26	78536	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.50969774275	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTATCTAAAATTTAATT	NA	False	NA	NA	False	NA	NA	NA	136227790	136128444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_136128472_136209927_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
ES_00046705	chr5	-	270	1	FSM	ENSMUSG00000105349.2	ENSMUST00000199799.2	705	1	200	235	200	-235	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCGGCAGGGCTCCGAC	NA	False	NA	NA	False	NA	NA	NA	136150324	136150054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136150100_136150300
ES_00046706	chr5	-	3257	13	FSM	ENSMUSG00000029703.11	ENSMUST00000132976.8	3139	13	0	-118	0	118	multi-exon	FALSE	canonical	3	342	junction_8	19.3512847692917	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCATTTTCTGCTCTGCTT	6757	False	NA	NA	False	NA	NA	NA	136164855	136151802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161934_136162158_136162905_136163352_136163588_136164725
ES_00046707	chr5	-	209	1	FSM	ENSMUSG00000005057.14	ENSMUST00000197324.2	2296	1	606	1481	606	-1481	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	136250910	136250701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_136250700_136250900
ES_00046712	chr5	-	2608	19	NIC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	165	junction_2	151.419048983481	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCACGAACGATGCCCA	8458	False	NA	NA	False	NA	NA	NA	137305735	137294248	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_137294376_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ES_00046713	chr5	-	835	2	FSM	ENSMUSG00000037364.13	ENSMUST00000197144.2	835	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTGGGCTATGGAGGT	4878	False	NA	NA	False	NA	NA	NA	137295479	137294497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137294582_137294728
ES_00046714	chr5	-	1018	6	NIC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	19	-87	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	271.158256374391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCCCTCATGGAGAGT	8310	False	NA	NA	False	NA	NA	NA	137305883	137298592	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_137298676_137300387_137300577_137300788_137300936_137301041_137301303_137305307_137305448_137305685
ES_00046716	chr5	-	2338	9	FSM	ENSMUSG00000029713.16	ENSMUST00000150063.9	1569	9	-769	0	-114	0	multi-exon	FALSE	canonical	3	641	junction_6	43.7428565596715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCCAACCCCAGATGGG	2976	False	NA	NA	False	NA	NA	NA	137530328	137526764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956
ES_00046717	chr5	-	554	2	FSM	ENSMUSG00000029718.15	ENSMUST00000146589.2	555	2	0	1	0	-1	multi-exon	FALSE	canonical	3	540	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATCGTGTCTGAGGTTC	9712	False	NA	-5	True	AATAAA	-18	NA	137604060	137603367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_137603580_137603718
ES_00046719	chr5	-	2714	11	NIC	ENSMUSG00000029722.16	novel	2893	12	NA	NA	4	9	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	44.2361842839095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTCTGA	1801	False	NA	NA	False	NA	NA	NA	137682951	137648737	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ES_00046722	chr5	-	2501	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	40	junction_14	176.391146985028	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTCCCGCATCACATA	1965	False	NA	-2	True	AATAAA	-20	NA	138185475	138176876	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185223
ES_00046724	chr5	-	1971	6	NNC	ENSMUSG00000025856.16	novel	1543	7	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	152.901275338043	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGATGCATCCCGTG	NA	False	NA	-20	True	ACTAAA	-31	NA	138980708	138961769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979046_138979140_138980463
ES_00046725	chr5	-	521	2	FSM	ENSMUSG00000029560.13	ENSMUST00000195982.2	522	2	1	0	1	0	multi-exon	FALSE	canonical	3	207	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAACACAGTCCATCGTGG	1201	False	NA	NA	False	NA	NA	NA	140339268	140338510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_140338951_140339187
ES_00046728	chr5	-	4468	17	NIC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	58	junction_16	44.6192223150516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	6130	False	NA	-2	True	AATAAA	-15	NA	143098749	142976648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084256_143098653
ES_00046729	chr5	-	4787	18	NNC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	-9275	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_17	54.2291051719542	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	4989	False	NA	-2	True	AATAAA	-15	NA	143108024	142976648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653_143098929_143107889
ES_00046731	chr5	-	509	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3496	False	NA	0	True	AATAAA	-19	NA	143151487	143150533	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_143150848_143151184_143151305_143151412
ES_00046732	chr5	-	1265	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	11	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	87.5293536769354	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCATTGTCTGTGTTGGT	5323	False	NA	-2	True	AATACA	-37	NA	143314957	143302232	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314920
ES_00046736	chr5	-	5165	17	NIC	ENSMUSG00000038780.15	novel	5343	18	NA	NA	12	-11	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	67.2339374404772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAACTTTACATTTTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	144902637	144813322	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ES_00046744	chr5	-	1648	4	FSM	ENSMUSG00000066551.13	ENSMUST00000110505.8	1720	4	72	0	72	0	multi-exon	FALSE	canonical	3	7993	junction_1	258.478023996023	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	8576	False	NA	NA	False	AGTAAA	-18	NA	148988038	148985037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397
ES_00046753	chr5	+	1255	1	Intergenic	novelGene_3063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCGGTGTTAACCACTG	NA	False	NA	NA	False	NA	NA	NA	7482733	7483988	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_7482700_7484000
ES_00046755	chr5	+	225	1	Intergenic	novelGene_3067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGAGTAATTCATTCACC	3493	False	NA	NA	False	AATACA	-10	NA	12387006	12387231	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_12387000_12387200
ES_00046756	chr5	+	208	1	Intergenic	novelGene_3078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGATACCACTTTATAAAG	NA	False	NA	NA	False	NA	NA	NA	23277773	23277981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23277800_23278000
ES_00046757	chr5	+	306	1	Intergenic	novelGene_3079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCTGAAGAGCATAAAGGG	NA	False	NA	NA	False	NA	NA	NA	23570785	23571091	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_23570800_23571100
ES_00046758	chr5	+	208	1	Intergenic	novelGene_3090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTATCTCAAATACGAAA	NA	False	NA	NA	False	NA	NA	NA	25738654	25738862	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_25738700_25738900
ES_00046759	chr5	+	202	1	Intergenic	novelGene_3097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GATTTAAAAAAAAAAAAATA	7104	False	NA	NA	False	NA	NA	NA	30228069	30228271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_30228100_30228300
ES_00046760	chr5	+	201	1	Intergenic	novelGene_3100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAAGTCTTATAAAGGA	NA	False	NA	NA	False	NA	NA	NA	30418668	30418869	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_30418700_30418900
ES_00046761	chr5	+	215	1	Intergenic	novelGene_3103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATAATAAACCTTAAAGC	NA	False	NA	NA	False	NA	NA	NA	31167365	31167580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_31167400_31167600
ES_00046762	chr5	+	206	1	Intergenic	novelGene_3119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTGTGCACCACAAAAA	NA	False	NA	NA	False	NA	NA	NA	45416825	45417031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_45416800_45417000
ES_00046764	chr5	+	214	1	Intergenic	novelGene_3126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	64409630	64409844	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_64409600_64409800
ES_00046765	chr5	+	532	1	Intergenic	novelGene_3129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTCACTGATATTAAGGAA	NA	False	NA	NA	False	NA	NA	NA	65759936	65760468	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_65759900_65760500
ES_00046767	chr5	+	204	1	Intergenic	novelGene_3148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATATTCCTAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	77376682	77376886	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_77376700_77376900
ES_00046768	chr5	+	348	1	Intergenic	novelGene_3162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCATTTATTAGCTTTT	2375	False	NA	NA	False	NA	NA	NA	91076995	91077343	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_91077000_91077300
ES_00046769	chr5	+	203	1	Intergenic	novelGene_3166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGGAAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	92259453	92259656	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_92259500_92259700
ES_00046770	chr5	+	339	1	Intergenic	novelGene_3173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTTTAGAAGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	97608643	97608982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_97608600_97609000
ES_00046771	chr5	+	376	1	Intergenic	novelGene_3175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATCCGTCTGAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	98153938	98154314	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_98153900_98154300
ES_00046772	chr5	+	834	1	Intergenic	novelGene_3177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGAAATTACAGCTAGAA	NA	False	NA	NA	False	NA	NA	NA	98154320	98155154	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_98154300_98155200
ES_00046773	chr5	+	209	1	Intergenic	novelGene_3181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAATAAAACTTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	100538149	100538358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_100538100_100538400
ES_00046774	chr5	+	209	1	Intergenic	novelGene_3187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104725105	104725314	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_104725100_104725300
ES_00046775	chr5	+	219	1	Intergenic	novelGene_3205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTGTGCTCAGA	NA	False	NA	NA	False	NA	NA	NA	106944782	106945001	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_106944800_106945000
ES_00046776	chr5	+	213	1	Intergenic	novelGene_3213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTCTCCCATGATTG	NA	False	NA	NA	False	NA	NA	NA	108838924	108839137	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_108838900_108839100
ES_00046777	chr5	+	215	1	Intergenic	novelGene_3223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATATTTTGAGGTTCATT	NA	False	NA	NA	False	NA	NA	NA	110365107	110365322	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_110365100_110365300
ES_00046778	chr5	+	211	1	Intergenic	novelGene_3226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGAATCGACTCATAGAA	NA	False	NA	NA	False	NA	NA	NA	111441924	111442135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_111441900_111442100
ES_00046779	chr5	+	205	1	Intergenic	novelGene_3227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111904286	111904491	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_111904300_111904500
ES_00046780	chr5	+	210	1	Intergenic	novelGene_3231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACCTTCTAAGAGCTGC	6117	False	NA	NA	False	NA	NA	NA	114218163	114218373	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_114218200_114218400
ES_00046781	chr5	+	201	1	Intergenic	novelGene_3237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACATCACAAGATGATCA	NA	False	NA	25	True	NA	NA	NA	114967465	114967666	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_114967500_114967700
ES_00046783	chr5	+	349	1	Intergenic	novelGene_3244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	115802310	115802659	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_115802300_115802700
ES_00046784	chr5	+	343	1	Intergenic	novelGene_3248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCTATCTCTTTTTCCA	NA	False	NA	NA	False	NA	NA	NA	116180617	116180960	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_116180600_116181000
ES_00046785	chr5	+	205	1	Intergenic	novelGene_3249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAGAGTAGTTTTAAC	1240	False	NA	NA	False	NA	NA	NA	117211349	117211554	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_117211300_117211600
ES_00046786	chr5	+	221	1	Intergenic	novelGene_3254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTGACACTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	119869663	119869884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_119869700_119869900
ES_00046787	chr5	+	451	1	Intergenic	novelGene_3255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGTTCCAGGACAGCCA	5917	False	NA	NA	False	NA	NA	NA	120627525	120627976	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_120627500_120628000
ES_00046788	chr5	+	209	1	Intergenic	novelGene_3267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATCTTTATTTAAAA	8895	False	NA	NA	False	NA	NA	NA	121761952	121762161	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_121762000_121762200
ES_00046789	chr5	+	205	1	Intergenic	novelGene_3269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGCTCCAACACAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	122389881	122390086	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_122389900_122390100
ES_00046790	chr5	+	204	1	Intergenic	novelGene_3270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATGATGATAAAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	122421002	122421206	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_122421000_122421200
ES_00046791	chr5	+	206	1	Intergenic	novelGene_3271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTCCTTACCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	122437335	122437541	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_122437300_122437500
ES_00046792	chr5	+	228	1	Intergenic	novelGene_3274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAACAAAGAAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	123010894	123011122	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123010900_123011100
ES_00046793	chr5	+	207	1	Intergenic	novelGene_3278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAACCCCATTTCTAATAA	NA	False	NA	NA	False	NA	NA	NA	123460071	123460278	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123460100_123460300
ES_00046795	chr5	+	217	1	Intergenic	novelGene_3280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAAGATTTTCATAGT	NA	False	NA	NA	False	NA	NA	NA	123769769	123769986	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_123769800_123770000
ES_00046797	chr5	+	243	1	Intergenic	novelGene_3299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACACCCGCTTTCAAATT	5753	False	NA	NA	False	AATAAA	-45	NA	128609415	128609658	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_128609400_128609700
ES_00046799	chr5	+	204	1	Intergenic	novelGene_3300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCAGGGCTCTTGCAC	6875	False	NA	NA	False	NA	NA	NA	129121881	129122085	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129121900_129122100
ES_00046800	chr5	+	1437	1	Intergenic	novelGene_3301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTTTCTTTTGTTTTAC	6315	False	NA	NA	False	NA	NA	NA	129721828	129723265	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_129721800_129723300
ES_00046801	chr5	+	205	1	Intergenic	novelGene_3307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTAGTCTCCCAGGTC	NA	False	NA	NA	False	NA	NA	NA	130185851	130186056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_130185900_130186100
ES_00046802	chr5	+	205	1	Intergenic	novelGene_3313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	763	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTATAAAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	134356577	134356782	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_134356600_134356800
ES_00046803	chr5	+	301	1	Intergenic	novelGene_3320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACACATTCAAAAGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	135306315	135306616	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_135306300_135306600
ES_00046804	chr5	+	439	1	Intergenic	novelGene_3321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACGAGATCTGACTCCCT	NA	False	NA	NA	False	NA	NA	NA	135391856	135392295	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_135391900_135392300
ES_00046806	chr5	+	246	1	Intergenic	novelGene_3323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCAGTCTGGGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	135842735	135842981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_+_135842700_135843000
ES_00046814	chr5_JH584296v1_random	+	201	1	Intergenic	novelGene_3350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATTAAATTAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	49445	49646	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr5_JH584296v1_random_+_49400_49600
ES_00046815	chr6	+	916	6	FSM	ENSMUSG00000001376.18	ENSMUST00000184780.8	1587	6	-31	702	-9	-702	multi-exon	FALSE	canonical	3	151	junction_1	10.4575331699211	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	3498394	3520643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206
ES_00046816	chr6	+	3771	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	8	9	8	-9	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAGGATTTGCTGTCTT	NA	False	NA	NA	False	TATAAA	-13	NA	3498389	3603522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ES_00046817	chr6	+	774	11	FSM	ENSMUSG00000029661.17	ENSMUST00000148864.2	3221	11	148	2299	148	-2299	multi-exon	FALSE	canonical	0	0	junction_2	1.42828568570857	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATTATTATTTATAGA	4369	False	NA	NA	False	NA	NA	NA	4520771	4527153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_4520880_4521230_4521285_4521395_4521495_4522441_4522496_4522955_4523055_4523593_4523648_4524116_4524171_4524501_4524556_4524875_4524930_4525881_4525927_4527054
ES_00046818	chr6	+	4049	18	FSM	ENSMUSG00000015189.13	ENSMUST00000015333.12	3961	18	-88	0	-88	0	multi-exon	TRUE	canonical	3	22	junction_3	9.97574914150592	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTGTGGTTTTTGTTT	-1	True	NA	30	True	AATAAA	-41	NA	4600750	4643355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_4601302_4607982_4608080_4608633_4608755_4613234_4613280_4614648_4614712_4619288_4619334_4619760_4619885_4621071_4621287_4624051_4624475_4625465_4625556_4629961_4630082_4631007_4631165_4631518_4631599_4634001_4634104_4635745_4635887_4636968_4637047_4640914_4641008_4641851
ES_00046819	chr6	+	6430	2	FSM	ENSMUSG00000092035.9	ENSMUST00000176551.3	6567	2	134	3	134	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTGTCCTGATCATTT	92	False	NA	NA	False	AATAAA	-33	NA	4747539	4760514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_4747579_4754123
ES_00046820	chr6	+	351	2	ISM	ENSMUSG00000032827.16	ENSMUST00000168998.9	2966	7	-3	172976	-3	-1272	5prime_fragment	FALSE	canonical	3	6	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGAGTTCCAGGCACT	7	True	NA	NA	False	NA	NA	NA	4902970	4905515	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_4903032_4905225
ES_00046821	chr6	+	4302	2	FSM	ENSMUSG00000042505.7	ENSMUST00000040826.6	4323	2	2	19	-1	-19	multi-exon	FALSE	canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAGAGTAATACATTGG	-16	True	NA	NA	False	AATAAA	-1	NA	6956005	7042960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_6956201_7038853
ES_00046822	chr6	+	547	1	FSM	ENSMUSG00000099178.2	ENSMUST00000183839.2	945	1	261	137	261	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	403	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAGAAGGCGAGCGCCA	NA	False	NA	NA	False	TATAAA	-45	NA	7194532	7195079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_7194500_7195100
ES_00046823	chr6	+	6216	4	FSM	ENSMUSG00000042460.6	ENSMUST00000040159.6	6092	4	-124	0	-124	0	multi-exon	FALSE	canonical	3	122	junction_1	4.89897948556636	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCATCTGTGTATTTT	62	False	NA	16	True	AATAAA	-17	NA	7844717	7875687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_7845395_7863904_7864142_7866375_7867044_7871053
ES_00046824	chr6	+	6056	4	NNC	ENSMUSG00000042460.6	novel	6092	4	NA	NA	2145	5	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	59.4474557908074	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGTGTATTTTTTTTA	7	False	NA	21	True	AATAAA	-22	NA	7846986	7875692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_7847499_7863904_7864142_7866375_7867044_7871053
ES_00046825	chr6	+	3710	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAAACTTTTTTCTTTT	-18	True	NA	NA	False	AATAAA	-24	NA	8209221	8236274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
ES_00046826	chr6	+	2078	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	-53	0	-5	0	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAATGGCTTTCATTGC	4	True	NA	NA	False	AATAAA	-22	NA	8259376	8428760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
ES_00046828	chr6	+	3075	17	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_16	37.5349836818934	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATTGTATGATTTA	19	True	NA	NA	False	AATAAA	-17	NA	11907882	12008012	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12007703
ES_00046829	chr6	+	3358	18	FSM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	-22	0	13	0	multi-exon	FALSE	canonical	3	71	junction_1	28.335117658721	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAATTCATATTTTTTT	-13	True	NA	12	True	AATAAA	-23	NA	11925892	12081204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
ES_00046830	chr6	+	995	1	FSM	ENSMUSG00000083620.2	ENSMUST00000121833.2	994	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAAAATTATTTTTCTT	NA	False	NA	NA	False	AAGAAA	-28	NA	12857394	12858389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_12857400_12858400
ES_00046832	chr6	+	6072	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	-70	0	10	0	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGTCATCCTCTTGAAA	-45	True	NA	18	True	AATAAA	-19	NA	13069767	13089268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
ES_00046833	chr6	+	1529	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	-29	-1	14	1	multi-exon	FALSE	canonical	3	16	junction_1	3.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGTTATGGATGATAGA	-1	True	NA	NA	False	AATAAA	-23	NA	13871538	13896422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_13871627_13881271_13881381_13895090
ES_00046834	chr6	+	3435	5	FSM	ENSMUSG00000041390.19	ENSMUST00000189359.7	3435	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	30.3016088681773	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTTTAAGATCTTTTTT	-41	True	NA	12	True	ATTAAA	-20	NA	15720659	15802168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212_15770492_15799616
ES_00046835	chr6	+	3549	6	NIC	ENSMUSG00000041390.19	novel	3431	5	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	62.7011961608389	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTGCTTTAAGATCTT	3	True	NA	8	True	ATTAAA	-16	NA	15720703	15802164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_15720963_15721185_15721364_15731582_15731745_15740986_15741110_15770212_15770492_15799616
ES_00046836	chr6	+	3635	4	FSM	ENSMUSG00000041390.19	ENSMUST00000125326.8	3635	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	31.8433666561813	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	19	True	NA	NA	False	NA	NA	NA	15720719	15773303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212
ES_00046837	chr6	+	3233	4	FSM	ENSMUSG00000041390.19	ENSMUST00000120512.8	1871	4	-5	-1357	-5	0	multi-exon	FALSE	canonical	3	115	junction_1	16.539514973407	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTGCTTTAAGATCTT	84	False	NA	8	True	ATTAAA	-16	NA	15721080	15802164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_15721364_15740986_15741110_15770212_15770492_15799616
ES_00046838	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	625	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-34	True	NA	NA	False	AATAAA	-15	NA	17065147	17105822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ES_00046839	chr6	+	6826	22	FSM	ENSMUSG00000009376.16	ENSMUST00000115443.8	6809	22	-17	0	-17	0	multi-exon	TRUE	canonical	1	2	junction_15	4.2527835355745	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTAGCTAGTCCTG	2	True	NA	NA	False	AATAAA	-27	NA	17463781	17573979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17464248_17487795_17487845_17491225_17492437_17513348_17513541_17526311_17526447_17527074_17527249_17531421_17531583_17533909_17534013_17534120_17534258_17534940_17535103_17535836_17535937_17540436_17540656_17546948_17547096_17548684_17548839_17549030_17549172_17553237_17553469_17555545_17555627_17558707_17558890_17562156_17562267_17563552_17563719_17571370_17571508_17571611
ES_00046840	chr6	+	2537	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	0	0	0	0	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTAAGTTGTGTGAATT	1217	False	NA	NA	False	AGTAAA	-19	NA	17636981	17666971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ES_00046842	chr6	+	2084	15	FSM	ENSMUSG00000029534.18	ENSMUST00000052113.12	2046	15	-38	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	6.64093674238255	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGACTGATCAAAAAGT	15	False	NA	NA	False	NA	NA	NA	17693992	17942965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
ES_00046843	chr6	+	2194	16	FSM	ENSMUSG00000029534.18	ENSMUST00000115419.8	2194	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	10.4490297263536	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGTGTCGTCTTCTAT	15	False	NA	NA	False	AATAAA	-25	NA	17693992	17943021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17850355_17850425_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922124_17930764_17930858_17934117_17934258_17942668
ES_00046844	chr6	+	2266	16	FSM	ENSMUSG00000029534.18	ENSMUST00000081635.13	2115	16	-95	-56	-10	0	multi-exon	FALSE	canonical	2	9	junction_7	7.93473376995095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGTGTCGTCTTCTAT	14	True	NA	NA	False	AATAAA	-25	NA	17693935	17943021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17850355_17850425_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
ES_00046845	chr6	+	274	1	FSM	ENSMUSG00000084203.2	ENSMUST00000122085.2	1008	1	254	480	254	-480	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCCATACCATCACTGC	NA	False	NA	NA	False	NA	NA	NA	18144986	18145260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_18145000_18145300
ES_00046846	chr6	+	630	1	FSM	ENSMUSG00000071568.6	ENSMUST00000096101.6	508	1	-29	-93	-29	93	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTTAGCTAGTCCCAAC	NA	False	NA	NA	False	NA	NA	NA	18824521	18825151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_18824500_18825200
ES_00046847	chr6	+	826	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	-19	0	-19	0	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	NA	False	NA	17	True	AATAAA	-17	NA	18848558	18854052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
ES_00046848	chr6	+	3820	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	-20	0	-20	0	multi-exon	FALSE	canonical	3	104	junction_1	20.5043837280255	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCTGAGTGTTCGAT	NA	False	NA	NA	False	NA	NA	NA	21949549	21976037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ES_00046849	chr6	+	910	8	FSM	ENSMUSG00000029670.13	ENSMUST00000151473.8	889	8	-21	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	48.2430073181807	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCCTCCGCCACGGAC	-11	True	NA	NA	False	NA	NA	NA	21949647	21970063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_21949793_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912
ES_00046850	chr6	+	2554	12	FSM	ENSMUSG00000029670.13	ENSMUST00000115389.8	2546	12	-8	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	46.7513203066312	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	-11	True	NA	22	True	AATATA	-21	NA	21949647	21974902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968916_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ES_00046853	chr6	+	204	1	Intergenic	novelGene_3375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTGTATTTTCATATCA	NA	False	NA	NA	False	NA	NA	NA	22397964	22398168	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_22398000_22398200
ES_00046854	chr6	+	858	1	FSM	ENSMUSG00000106803.2	ENSMUST00000201693.2	768	1	14	-104	14	104	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAATTTAAACAACACAAC	NA	False	NA	NA	False	AATAAA	-24	NA	22733745	22734603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_22733700_22734600
ES_00046855	chr6	+	1134	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	-18	0	-18	0	multi-exon	TRUE	canonical	3	1725	junction_4	143.712769091685	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	-49	True	NA	17	True	AATAAA	-17	NA	28423540	28426601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
ES_00046857	chr6	+	3495	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	-13	0	-13	0	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGAGCCAGAACACTG	5222	False	NA	30	True	AATAAA	-31	NA	28480333	28888831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
ES_00046858	chr6	+	3510	25	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-13	-4067	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	145.883366417225	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATTGAAGGCCAGGTCT	5222	False	NA	NA	False	NA	NA	NA	28480333	28931094	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233_28888818_28931065
ES_00046860	chr6	+	982	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCCTGTTGACATG	1	True	NA	14	True	AATAAA	-21	NA	29272624	29275445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29272810_29274648
ES_00046861	chr6	+	1598	3	NNC	ENSMUSG00000043421.9	novel	982	2	NA	NA	51	23493	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	62	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTAGTCTGCTTTCT	2	True	NA	NA	False	AATAAA	-27	NA	29272675	29298938	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_29272810_29274648_29275441_29298266
ES_00046862	chr6	+	1112	1	Intergenic	novelGene_3376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTAGTCTGCTTTCT	NA	False	NA	NA	False	AATAAA	-27	NA	29297826	29298938	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29297800_29298900
ES_00046863	chr6	+	2692	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	-22	0	-9	0	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACCTTAGCCATTGCA	NA	False	NA	NA	False	NA	NA	NA	29348095	29376128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ES_00046864	chr6	+	3238	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	-9	0	-9	0	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	NA	False	NA	118	True	AATAAA	-22	NA	29348095	29376674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ES_00046865	chr6	+	3399	8	NIC	ENSMUSG00000029767.17	novel	1670	7	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	350.870637246311	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTGTCTTTTATTCT	9	False	NA	117	True	AATAAA	-21	NA	29348127	29376673	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_29348208_29356469_29356697_29361292_29361487_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ES_00046866	chr6	+	3126	6	ISM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	8352	-546	0	0	3prime_fragment	FALSE	canonical	3	300	junction_1	319.203132816706	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	8290	False	NA	118	True	AATAAA	-22	NA	29356469	29376674	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ES_00046867	chr6	+	676	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	27	0	27	0	multi-exon	FALSE	canonical	3	1924	junction_1	0	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	-5	True	NA	37	True	ATTAAA	-19	NA	29467743	29470511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29467974_29470065
ES_00046868	chr6	+	2124	9	FSM	ENSMUSG00000029771.13	ENSMUST00000004392.12	2189	9	62	3	-21	-3	multi-exon	FALSE	canonical	3	5	junction_7	3.25720355519885	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGGTCTGCCCATTTATT	1	False	NA	NA	False	AATAAA	-9	NA	29526685	29537315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29526774_29531124_29531331_29533950_29534141_29534533_29534593_29535039_29535074_29535251_29535510_29535723_29536117_29536202_29536322_29536538
ES_00046869	chr6	+	513	2	Intergenic	novelGene_3379	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATACGTGTATAATGTG	NA	False	NA	5	True	AATAAA	-15	NA	29639058	29642165	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29639206_29641799
ES_00046871	chr6	+	2017	8	FSM	ENSMUSG00000001763.15	ENSMUST00000046750.14	1994	8	-23	0	-23	0	multi-exon	FALSE	canonical	3	27	junction_2	5.15474815790535	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTGTCCTACATCAATT	9	False	NA	9	True	AATAAA	-18	NA	29694197	29718558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29694544_29709939_29709998_29710585_29710714_29711014_29711090_29713437_29713534_29716703_29716833_29717188_29717351_29717535
ES_00046873	chr6	+	913	1	FSM	ENSMUSG00000001761.8	ENSMUST00000201515.2	2502	1	-62	1651	-62	-1651	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCGCGCGGGAGTCGGG	NA	False	NA	NA	False	NA	NA	NA	29735439	29736352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29735400_29736400
ES_00046874	chr6	+	3998	12	FSM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	-224	5	-33	-5	multi-exon	FALSE	canonical	3	65	junction_3	9.38347413151758	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCATGCGTGTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	29735468	29761359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29736353_29753468_29753675_29754320_29754531_29754690_29754864_29755172_29755393_29755481_29755606_29756779_29756873_29757255_29757365_29758334_29758521_29758864_29759014_29759482_29759618_29759850
ES_00046876	chr6	+	5211	17	FSM	ENSMUSG00000029772.18	ENSMUST00000102995.9	5155	17	-51	-5	-14	0	multi-exon	FALSE	canonical	3	86	junction_2	15.2883738507403	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTGTCCTGAGAATACC	145	False	NA	8	True	AATAAA	-16	NA	29768427	29912308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29768906_29863141_29863251_29870566_29870711_29871184_29871286_29878527_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
ES_00046881	chr6	+	3617	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115212.8	3584	12	-33	0	-33	0	multi-exon	FALSE	canonical	3	109	junction_11	130.142642658033	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGCCCCTCTCTCTA	NA	False	NA	NA	False	AATAAA	-18	NA	30047953	30153457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ES_00046882	chr6	+	3890	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115211.8	3295	12	-595	0	-581	0	multi-exon	FALSE	canonical	3	109	junction_11	122.448774919714	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTATGTTCTTTTCT	NA	False	NA	69	True	TATAAA	-12	NA	30047405	30153179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ES_00046883	chr6	+	2290	12	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	271	junction_11	90.9985923058862	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	13	True	NA	NA	False	NA	NA	NA	30048027	30140903	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ES_00046884	chr6	+	1881	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	-2	0	0	0	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	13	True	NA	7	True	AATAAA	-23	NA	30048027	30144859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ES_00046885	chr6	+	2294	13	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	1	-28	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	167.068411636272	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATGAGGC	14	True	NA	NA	False	AATAAA	-31	NA	30048028	30140875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ES_00046886	chr6	+	2288	12	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-2	-28	combination_of_known_junctions	FALSE	canonical	3	218	junction_2	102.024061333144	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATGAGGC	-16	True	NA	NA	False	AATAAA	-31	NA	30047998	30140875	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ES_00046887	chr6	+	2353	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	163.040383545509	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTAGTTGTCTCTGTG	-18	True	NA	NA	False	NA	NA	NA	30047996	30140899	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ES_00046888	chr6	+	1910	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATATGTATGGTTTGGG	14	True	NA	1	True	AATAAA	-17	NA	30048028	30144853	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ES_00046890	chr6	+	5859	9	FSM	ENSMUSG00000029775.15	ENSMUST00000068240.13	3951	9	-17	-1891	-17	0	multi-exon	FALSE	canonical	3	93	junction_1	36.2954456509353	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTTGCCATGATTGTC	NA	False	NA	31	True	AATAAA	-18	NA	30401849	30455178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30402150_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
ES_00046891	chr6	+	5901	10	FSM	ENSMUSG00000029775.15	ENSMUST00000068259.10	5901	10	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_2	43.3720624650147	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTTGCCATGATTGTC	-21	True	NA	31	True	AATAAA	-18	NA	30401894	30455178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30402150_30427707_30427795_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
ES_00046893	chr6	+	2679	13	FSM	ENSMUSG00000051855.16	ENSMUST00000124665.3	2665	13	-14	0	-11	0	multi-exon	FALSE	canonical	1	1	junction_1	120.876888701779	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGGCTTCCCCTCCCCC	NA	False	NA	16	True	AATAAA	-22	NA	30738037	30748464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30738335_30740238_30740343_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ES_00046895	chr6	+	3638	6	FSM	ENSMUSG00000025609.16	ENSMUST00000137621.8	3617	6	-21	0	-20	0	multi-exon	FALSE	canonical	3	539	junction_3	38.0242028187311	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAATTGCCCATTGATTG	NA	False	NA	NA	False	AATAAA	-23	NA	31375742	31412952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873
ES_00046896	chr6	+	1109	9	FSM	ENSMUSG00000025609.16	ENSMUST00000134315.8	3635	9	-20	2546	-20	-2546	multi-exon	FALSE	canonical	1	49	junction_8	185.85574883495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTAGAGTTAATAGTGCT	NA	False	NA	NA	False	NA	NA	NA	31375742	31445278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31445065
ES_00046898	chr6	+	727	6	FSM	ENSMUSG00000025609.16	ENSMUST00000154954.8	704	6	-23	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	236.201608800618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAAACTTAGAAACTTG	NA	False	NA	NA	False	AAAAAG	-10	NA	31375770	31410066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409870
ES_00046899	chr6	+	2442	18	NIC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	20	junction_5	167.370359891596	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTATATTTTTCTTT	NA	False	NA	17	True	AATAAA	-25	NA	31375782	31484903	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409870_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ES_00046902	chr6	+	1061	6	FSM	ENSMUSG00000029763.18	ENSMUST00000139132.2	1060	6	-8	7	0	-7	multi-exon	FALSE	canonical	1	3	junction_5	51.1640498787967	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACATCTTTTTTTAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33226062	33296324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33296054
ES_00046903	chr6	+	1352	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	-2	8	-2	-8	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAACACGTTCTGAAGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	34331051	34345390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
ES_00046905	chr6	+	212	1	FSM	ENSMUSG00000061758.14	ENSMUST00000182055.2	969	1	823	-66	823	66	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGATTTCAGCCCAACTGA	9210	False	NA	NA	False	NA	NA	NA	34367356	34367568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34367400_34367600
ES_00046909	chr6	+	821	5	FSM	ENSMUSG00000029761.17	ENSMUST00000142716.3	821	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.8843006314228	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTTTGAATAAATCTGT	NA	False	NA	NA	False	NA	NA	NA	34723320	34739059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34723575_34730377_34730524_34732568_34732834_34734918_34735060_34739044
ES_00046910	chr6	+	637	1	FSM	ENSMUSG00000082920.2	ENSMUST00000119745.2	785	1	71	77	71	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCCTAAGTCTGTGGCT	7977	False	NA	NA	False	NA	NA	NA	34763684	34764321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34763700_34764300
ES_00046912	chr6	+	495	5	FSM	ENSMUSG00000029848.12	ENSMUST00000185102.2	495	5	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	24.3554408705735	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAAAACGG	NA	False	NA	72	True	NA	NA	NA	34897938	34910080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932
ES_00046913	chr6	+	1213	8	FSM	ENSMUSG00000029848.12	ENSMUST00000114997.3	1207	8	-6	0	0	0	multi-exon	FALSE	canonical	1	14	junction_2	25.1931315550691	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897938	34916277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34897990_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ES_00046914	chr6	+	6430	43	FSM	ENSMUSG00000038759.16	ENSMUST00000043815.16	6412	43	-18	0	-9	0	multi-exon	FALSE	canonical	2	193	junction_5	62.1117418909309	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAATGTGTGGTCATTC	NA	False	NA	NA	False	AATAAA	-16	NA	35154346	35224531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
ES_00046916	chr6	+	3642	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	-214	-1019	-19	1019	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAACTTTTACATTACTTT	NA	False	NA	NA	False	AATAAA	-17	NA	35154336	35183607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
ES_00046917	chr6	+	2516	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	5	0	5	0	multi-exon	FALSE	canonical	3	978	junction_2	33.5	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCCACACTACTT	NA	False	NA	15	True	NA	NA	NA	35229593	35240431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_35229718_35237344_35237399_35238093
ES_00046920	chr6	+	1644	3	Intergenic	novelGene_3394	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	4.5	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGTATTGCTTACTTTT	NA	False	NA	26	True	ATTAAA	-26	NA	37419460	37424340	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_37419969_37422999_37423146_37423350
ES_00046922	chr6	+	465	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTTTCCACCATCAG	NA	False	NA	NA	False	NA	NA	NA	37783020	37783485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_37783000_37783500
ES_00046924	chr6	+	3940	19	FSM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_9	66.0549014078441	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	37847745	37943231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
ES_00046927	chr6	+	537	3	FSM	ENSMUSG00000029829.5	ENSMUST00000031851.5	631	3	80	14	80	-14	multi-exon	FALSE	canonical	2	4	junction_1	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGTTCCTCGAAGTCTCT	NA	False	NA	NA	False	TTTAAA	-4	NA	38086269	38092730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_38086491_38091542_38091612_38092483
ES_00046930	chr6	+	497	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	-71	-78	-71	78	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTCTAACATTCTCCC	1143	False	NA	NA	False	NA	NA	NA	38353670	38354167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_38353700_38354200
ES_00046936	chr6	+	502	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	-23	0	-23	0	multi-exon	FALSE	canonical	3	741	junction_1	0	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	9906	False	NA	9	True	ATTAAA	-17	NA	38511734	38516384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_38511946_38516093
ES_00046938	chr6	+	2721	10	FSM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	-19	0	-19	0	multi-exon	FALSE	canonical	3	38	junction_9	33.3603594142346	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACCTAGTAGTTAACAAAC	NA	False	NA	4	True	ATTAAA	-19	NA	38528380	38586405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
ES_00046939	chr6	+	3448	2	FSM	ENSMUSG00000029823.17	ENSMUST00000160922.5	3448	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATGAGGGAGTGA	NA	False	NA	NA	False	AAGAAA	-43	NA	38528465	38534984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_38528844_38531914
ES_00046942	chr6	+	6986	9	ISM	ENSMUSG00000029823.17	ENSMUST00000161227.8	2405	11	13979	-43	-4320	0	3prime_fragment	FALSE	canonical	3	38	junction_8	31.7881168835148	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACCTAGTAGTTAACAAAC	7864	False	NA	4	True	ATTAAA	-19	NA	38542716	38586405	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
ES_00046946	chr6	+	3535	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	0	7	0	-7	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTCATACATCCCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	39550806	39565696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
ES_00046948	chr6	+	493	4	FSM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	-2	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1056.98470502967	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATTAAAGGTGTAAAT	NA	False	NA	-19	True	AAGAAA	-7	NA	39569516	39576356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_39569738_39573384_39573530_39575199_39575296_39576325
ES_00046949	chr6	+	478	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	-23	0	-14	0	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569493	39576405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
ES_00046951	chr6	+	206	2	Intergenic	novelGene_3414	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	79	junction_1	0	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGGATTGCATACTAGGA	NA	False	NA	NA	False	NA	NA	NA	39733744	39750980	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39733775_39750804
ES_00046952	chr6	+	225	2	Intergenic	novelGene_3415	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2923	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGGATTGCATACTAGGA	NA	False	NA	NA	False	NA	NA	NA	39739752	39750980	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39739802_39750804
ES_00046953	chr6	+	2539	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	-8	0	-8	0	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302097	40373696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ES_00046954	chr6	+	2758	5	FSM	ENSMUSG00000029916.12	ENSMUST00000200715.2	3174	5	1	415	1	-415	multi-exon	FALSE	canonical	3	11	junction_3	316.310270936623	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGACTTCCTCTAGAGTC	NA	False	NA	NA	False	NA	NA	NA	40306426	40334054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40306534_40324345_40324386_40329286_40331742_40331947_40332028_40333978
ES_00046955	chr6	+	3148	8	FSM	ENSMUSG00000029916.12	ENSMUST00000201751.2	836	8	-255	-2057	-255	1064	multi-exon	FALSE	canonical	3	517	junction_7	36.9572284498429	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACATACAGGCAACAGCTT	NA	False	NA	NA	False	NA	NA	NA	40352719	40374760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ES_00046956	chr6	+	4401	7	FSM	ENSMUSG00000029911.15	ENSMUST00000114779.9	4398	7	-3	0	-3	0	multi-exon	FALSE	canonical	3	1713	junction_1	435.133695929577	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGGTATTTTAAATAAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	40448282	40461634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ES_00046957	chr6	+	1151	6	FSM	ENSMUSG00000029911.15	ENSMUST00000031971.13	1063	6	-88	0	-25	0	multi-exon	FALSE	canonical	3	1713	junction_1	476.592320542411	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	40448260	40455521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856
ES_00046958	chr6	+	2837	1	FSM	ENSMUSG00000029911.15	ENSMUST00000201570.2	2837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAATGTATTATAG	NA	False	NA	NA	False	NA	NA	NA	40448386	40451223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40448400_40451200
ES_00046959	chr6	+	1200	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	-15	3	0	0	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448386	40457926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ES_00046960	chr6	+	940	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	-7	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448401	40457926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ES_00046962	chr6	+	3749	18	FSM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	13	0	13	0	multi-exon	TRUE	canonical	2	8	junction_2	4.47522978861417	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTCCATGCCTCAG	341	False	NA	13	True	ATTAAA	-25	NA	41582428	41597443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
ES_00046966	chr6	+	3700	11	ISM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	-93	-2016	-29	0	intron_retention	FALSE	canonical	3	27	junction_8	35.6869724129128	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGCCTGGTGTTTTTG	NA	False	NA	13	True	AATAAA	-20	NA	42241960	42259442	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017
ES_00046967	chr6	+	3597	12	NIC	ENSMUSG00000029863.14	novel	1439	12	NA	NA	-24	-4	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	42.7493173305891	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTGTGCCTGGTGTT	NA	False	NA	9	True	AATAAA	-16	NA	42241965	42259438	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246155_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017_42257128_42257279
ES_00046970	chr6	+	2301	9	FSM	ENSMUSG00000029860.17	ENSMUST00000070635.13	2301	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	9.78439446261239	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGCTAGTACTTGATT	NA	False	NA	3	True	TATAAA	-13	NA	42326802	42335326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
ES_00046972	chr6	+	281	2	FSM	ENSMUSG00000033542.14	ENSMUST00000183227.2	598	2	0	317	0	-317	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGACTTCTTCCAAACTC	NA	False	NA	NA	False	NA	NA	NA	43253871	43256537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_43253992_43256376
ES_00046973	chr6	+	1153	1	FSM	ENSMUSG00000107952.2	ENSMUST00000203583.2	1134	1	51	-70	51	70	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGAAGGCATGTGCTT	NA	False	NA	NA	False	NA	NA	NA	47022140	47023293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47022100_47023300
ES_00046975	chr6	+	3122	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	1	0	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47430838	47503073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ES_00046976	chr6	+	3161	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47431253	47503073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ES_00046977	chr6	+	530	2	FSM	ENSMUSG00000029686.16	ENSMUST00000143941.3	530	2	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTCTTTTTCAGCAGAG	NA	False	NA	7	True	AATAAA	-18	NA	47431321	47462111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47431418_47461677
ES_00046980	chr6	+	2876	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	30	0	-1	0	multi-exon	FALSE	canonical	3	16	junction_3	4.17612260356422	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAACAGGGATCATCACAT	NA	False	NA	NA	False	NA	NA	NA	47812627	47844622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
ES_00046983	chr6	+	2691	5	NNC	ENSMUSG00000052763.8	novel	2801	5	NA	NA	108	1	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	63.3141966702571	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCACAGGGTGTTTTCTGT	NA	False	NA	25	True	AATAAA	-32	NA	47897517	47909574	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907647
ES_00046984	chr6	+	2761	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGTCTTGCCTTGACC	9713	False	NA	18	True	AATAAA	-23	NA	47930323	47942234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
ES_00046985	chr6	+	5055	1	FSM	ENSMUSG00000042810.15	ENSMUST00000204308.2	5055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAGAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48372563	48377618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48372600_48377600
ES_00046986	chr6	+	4018	18	FSM	ENSMUSG00000042810.15	ENSMUST00000203371.3	4000	18	-18	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	17.5193417581865	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	48372547	48393833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48372822_48379804_48379945_48380311_48380432_48380924_48381075_48382170_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
ES_00046987	chr6	+	6667	18	FSM	ENSMUSG00000042810.15	ENSMUST00000114571.8	6695	18	28	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	12.8178616724737	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAGCAAGCTGATTAAC	NA	False	NA	NA	False	GATAAA	-24	NA	48372547	48396479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48372822_48379804_48379945_48380311_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
ES_00046989	chr6	+	333	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	48500451	48500784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48500500_48500800
ES_00046990	chr6	+	1795	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	-10	4	-10	-4	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATGTCTGGCCTCTGCTC	6194	False	NA	23	True	AATAAA	-31	NA	48514538	48518731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
ES_00046996	chr6	+	3132	3	NNC	ENSMUSG00000052751.17	novel	3138	3	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	12.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGGTGGTGTTCTTTT	NA	False	NA	21	True	AATAAA	-19	NA	48570827	48576016	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_48570987_48571724_48571911_48573229
ES_00047005	chr6	+	2587	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	380.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	348	False	NA	NA	False	TATAAA	-23	NA	49050781	49063685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_49051038_49059778_49059861_49061436
ES_00047010	chr6	+	1427	7	NNC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	11.0867789130417	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344713	49366214	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362309_49362390_49365750
ES_00047011	chr6	+	1596	10	ISM	ENSMUSG00000023403.15	ENSMUST00000163954.8	2988	23	-104	45618	-73	-45618	5prime_fragment	FALSE	canonical	2	108	junction_8	72.8109339231783	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	100	False	NA	NA	False	AATAAA	-18	NA	49372464	49400668	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309
ES_00047013	chr6	+	2392	20	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-73	0	at_least_one_novel_splicesite	TRUE	canonical	2	62	junction_6	56.8725064900417	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	100	False	NA	NA	False	AATAAA	-21	NA	49372464	49446434	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ES_00047014	chr6	+	3211	24	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-73	8	at_least_one_novel_splicesite	FALSE	canonical	2	90	junction_1	54.4319696453353	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATATTCTTTGCAATTTT	100	False	NA	NA	False	AATAAA	-30	NA	49372464	49446443	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ES_00047015	chr6	+	3303	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	-67	1	-67	0	multi-exon	FALSE	canonical	2	108	junction_8	52.5929548855327	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	106	False	NA	NA	False	AATAAA	-21	NA	49372470	49446434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ES_00047020	chr6	+	2512	3	FSM	ENSMUSG00000038388.15	ENSMUST00000167319.2	616	3	-556	-1340	-556	728	multi-exon	FALSE	canonical	3	1196	junction_2	36.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTCCGAGACA	NA	False	NA	NA	False	NA	NA	NA	50170839	50176647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_50171709_50173493_50173623_50175133
ES_00047029	chr6	+	2457	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	7	0	6	0	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAACTTTGTTCGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	51521509	51567650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ES_00047030	chr6	+	1299	3	FSM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	-9	-882	0	542	multi-exon	FALSE	canonical	3	43	junction_2	88.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACAACTAAGATCCATC	823	False	NA	NA	False	AATAAA	-22	NA	52079973	52090050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_52080017_52083750_52083877_52088920
ES_00047033	chr6	+	1398	4	NNC	ENSMUSG00000085412.8	novel	408	3	NA	NA	0	536	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	50.5239217269074	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATATTACACAACTAAGA	778	False	NA	NA	False	AATAAA	-16	NA	52079928	52090044	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_52080017_52082951_52083011_52083749_52083877_52088920
ES_00047034	chr6	+	941	4	NNC	ENSMUSG00000085412.8	novel	511	3	NA	NA	0	531	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.8062914365913	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACCAAATATTACACAAC	823	False	NA	NA	False	AATAAA	-11	NA	52079973	52090039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_52080017_52082951_52083011_52083749_52083877_52089327
ES_00047036	chr6	+	892	3	NNC	ENSMUSG00000085412.8	novel	511	3	NA	NA	0	542	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_2	79.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACAACTAAGATCCATC	823	False	NA	NA	False	AATAAA	-22	NA	52079973	52090050	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_52080017_52083750_52083877_52089327
ES_00047048	chr6	+	3283	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	-903	0	903	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTGTCCAGGGATCCCT	NA	False	NA	NA	False	ATTAAA	-27	NA	55014991	55057388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ES_00047049	chr6	+	2381	17	NNC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	747.261037786495	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014991	55056485	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045155_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ES_00047059	chr6	+	5676	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	0	41	0	-41	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCTCTTGATTAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	58573655	58672620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ES_00047061	chr6	+	2196	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	-18	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617530	58669496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ES_00047065	chr6	+	5235	26	NIC	ENSMUSG00000029804.18	novel	3596	23	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	8.031537835309	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTGTATTGTAATTGTG	NA	False	NA	13	True	AATAAA	-21	NA	58808476	58897383	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_58808918_58809386_58809522_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ES_00047068	chr6	+	3007	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59185854	59189018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_59186167_59186323
ES_00047072	chr6	+	4936	24	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	39.2537188345773	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGTAATGGTTTTT	1728	False	NA	28	True	AATAAA	-30	NA	65019593	65093045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
ES_00047073	chr6	+	728	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	-56	-72	2	0	multi-exon	FALSE	canonical	3	133	junction_2	73	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCAGAGCATTATGGA	1729	False	NA	5	True	AATAAA	-15	NA	65019594	65021187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_65019715_65020189_65020430_65020819
ES_00047074	chr6	+	990	7	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	2	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	142.526508255677	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1787	False	NA	NA	False	NA	NA	NA	65019652	65044450	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
ES_00047075	chr6	+	966	3	FSM	ENSMUSG00000029920.10	ENSMUST00000204696.3	734	3	-304	72	-51	0	multi-exon	FALSE	canonical	3	133	junction_2	64	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTGGAAATCTCCA	1650	False	NA	-67	True	AATAAA	-25	NA	65019515	65021115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_65019946_65020189_65020430_65020819
ES_00047077	chr6	+	1670	11	FSM	ENSMUSG00000029913.15	ENSMUST00000031973.13	1488	11	-104	-78	-67	0	multi-exon	FALSE	canonical	2	2	junction_3	49.012753442344	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755904	65913360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ES_00047081	chr6	+	1725	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAAGCTTTAAAA	NA	False	NA	19	True	AATAAA	-22	NA	66512451	66517975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
ES_00047084	chr6	+	4157	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114225.8	1876	4	-17	-2264	0	0	multi-exon	FALSE	canonical	2	75	junction_1	120.748590974066	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCCCTTTCTCTTCAT	NA	False	NA	57	True	AATAAA	-15	NA	66873406	66998334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_66873500_66891436_66891495_66992708_66992828_66994447
ES_00047085	chr6	+	762	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	-14	0	12	0	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873392	66994913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ES_00047086	chr6	+	1028	3	NNC	ENSMUSG00000036402.14	novel	1125	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAAGGCTAAAACTGAAAG	NA	False	NA	1	True	AATAAA	-17	NA	66873392	66995257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_66873500_66992716_66992828_66994447
ES_00047089	chr6	+	4255	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114226.8	1155	5	-35	-3065	2	4	multi-exon	FALSE	canonical	2	34	junction_3	135.972423674803	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTTTCTCTTCATTCAC	NA	False	NA	61	True	AATAAA	-19	NA	66873382	66998338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_66873512_66891436_66891495_66920808_66920867_66992708_66992828_66994447
ES_00047092	chr6	+	465	1	FSM	ENSMUSG00000047905.11	ENSMUST00000120174.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCCCTGTGTGGTCTGA	NA	False	NA	-73	True	NA	NA	NA	67182602	67183067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67182600_67183100
ES_00047093	chr6	+	275	2	ISM	ENSMUSG00000036371.7	ENSMUST00000204810.2	397	3	5	23824	5	-21906	5prime_fragment	FALSE	canonical	3	11	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTCTATGGATCTGG	9650	False	NA	NA	False	AAGAAA	-44	NA	67215164	67224432	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_67215355_67224347
ES_00047095	chr6	+	1667	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5844	False	NA	32	True	AATATA	-20	NA	67243966	67261290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ES_00047096	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ES_00047097	chr6	+	1167	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205091.3	1166	7	-1	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2347.58275797799	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ES_00047098	chr6	+	1618	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	-1	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTCACTTCATTTGT	5871	False	NA	37	True	AATATA	-25	NA	67243993	67261295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ES_00047101	chr6	+	484	2	FSM	ENSMUSG00000108206.2	ENSMUST00000204123.2	456	2	-57	29	-57	-29	multi-exon	FALSE	canonical	1	1	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGGCCACTCCTTGAA	NA	False	NA	NA	False	NA	NA	NA	71141725	71143074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71141830_71142694
ES_00047111	chr6	+	2759	15	FSM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	-31	0	-31	0	multi-exon	FALSE	canonical	3	675	junction_4	225.763692603481	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACTGAGTACTC	NA	False	NA	-1	True	AATAAA	-6	NA	71808283	71852228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047113	chr6	+	2653	14	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	16	-6	combination_of_known_junctions	FALSE	canonical	3	21	junction_10	494.340526573553	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAACACAATGAAAACTGA	NA	False	NA	-7	True	NA	NA	NA	71808332	71852222	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047116	chr6	+	2575	13	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_9	542.690186836734	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	9	True	AATAAA	-16	NA	71808366	71852238	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047117	chr6	+	2531	13	NIC	ENSMUSG00000052337.16	novel	2518	13	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_9	596.910302911771	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808377	71852241	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047118	chr6	+	2647	15	FSM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	-34	-314	0	0	multi-exon	TRUE	canonical	3	438	junction_4	278.631248156016	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACTGAGTACTC	NA	False	NA	-1	True	AATAAA	-6	NA	71808362	71852228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047119	chr6	+	2421	13	FSM	ENSMUSG00000052337.16	ENSMUST00000166938.8	2413	13	-8	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	399.840558500788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808393	71852234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047120	chr6	+	2518	13	FSM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	563.839288322085	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808393	71852241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00047121	chr6	+	2209	14	FSM	ENSMUSG00000052337.16	ENSMUST00000207003.2	2187	14	-22	0	0	0	multi-exon	FALSE	canonical	1	14	junction_13	607.299775853309	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATCTTCATGTGGTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	71808393	71854369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71851300_71851911_71854232
ES_00047125	chr6	+	2431	7	FSM	ENSMUSG00000056091.13	ENSMUST00000114112.4	2439	7	0	8	0	-8	multi-exon	FALSE	canonical	1	1	junction_1	20.3585908702499	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGACTTTGAGTGTTT	NA	False	NA	12	True	NA	NA	NA	72074606	72131547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72074979_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
ES_00047128	chr6	+	4622	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-17	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8309	False	NA	15	True	AATAAA	-15	NA	72324299	72330131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
ES_00047129	chr6	+	4928	3	ISM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-7	0	1	0	intron_retention	FALSE	canonical	3	33	junction_1	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8319	False	NA	15	True	AATAAA	-15	NA	72324309	72330131	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_72324499_72324575_72324695_72325511
ES_00047130	chr6	+	4649	3	FSM	ENSMUSG00000058706.6	ENSMUST00000204152.2	2118	3	0	-2531	0	0	multi-exon	FALSE	canonical	3	40	junction_2	4.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8359	False	NA	15	True	AATAAA	-15	NA	72324349	72330131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72324695_72325511_72325664_72325979
ES_00047136	chr6	+	1259	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	141	0	-18	0	multi-exon	TRUE	canonical	3	46	junction_1	14.6439217576592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526396	72539966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ES_00047137	chr6	+	1297	10	NIC	ENSMUSG00000056737.15	novel	515	5	NA	NA	91	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	24.7026764181985	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526725	72539966	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_72526852_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ES_00047148	chr6	+	857	3	FSM	ENSMUSG00000035104.15	ENSMUST00000150691.2	881	3	0	24	0	-24	multi-exon	FALSE	canonical	2	2	junction_2	2	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTGGAGTCTGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	82018668	82024107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_82018883_82021295_82021490_82023658
ES_00047150	chr6	+	1794	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	187.231641289607	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	11	True	ATTAAA	-16	NA	82923891	83007163	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83006750
ES_00047159	chr6	+	550	3	FSM	ENSMUSG00000068328.11	ENSMUST00000203749.2	545	3	-5	0	0	0	multi-exon	FALSE	canonical	3	960	junction_1	84.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	1016	False	NA	9	True	ATTAAA	-19	NA	83033828	83034663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83034075_83034256_83034376_83034478
ES_00047162	chr6	+	854	9	FSM	ENSMUSG00000069678.11	ENSMUST00000177177.8	854	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	65.3345955447801	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCATCTTCCTTCTTA	101	False	NA	23	True	AATAAA	-15	NA	83055610	83057835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83055681_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ES_00047165	chr6	+	710	2	FSM	ENSMUSG00000030037.10	ENSMUST00000129656.2	710	2	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83086185_83086294
ES_00047169	chr6	+	2299	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-189	-3	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCCTTCTTTCACTTGT	1461	False	NA	15	True	ATTAAA	-15	NA	83119183	83129557	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ES_00047175	chr6	+	3084	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	40018	4	0	-4	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACGCCATGTCTAATAA	5726	False	NA	20	True	AATAAA	-21	NA	83254374	83281922	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ES_00047176	chr6	+	2963	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACCTTACGCCATGTCTA	5729	False	NA	16	True	AATAAA	-17	NA	83254377	83281918	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ES_00047179	chr6	+	731	3	FSM	ENSMUSG00000045160.15	ENSMUST00000055875.14	709	3	-22	0	-22	0	multi-exon	FALSE	canonical	3	998	junction_1	19	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCCTTTCAGAAGCAGT	253	False	NA	46	True	NA	NA	NA	83327999	83335398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83328372_83330023_83330113_83335128
ES_00047180	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	False	NA	21	True	AATAAA	-32	NA	83688245	83715295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83688526_83710080_83710269_83714521
ES_00047183	chr6	+	1316	10	FSM	ENSMUSG00000034744.14	ENSMUST00000146117.8	1049	10	-47	-220	0	0	multi-exon	FALSE	canonical	3	35	junction_1	70.680816193489	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9437	False	NA	11	True	AATAAA	-19	NA	83772142	83779536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83772357_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ES_00047191	chr6	+	4442	27	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_22	90.472044457956	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891352	83963851	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83956828_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ES_00047192	chr6	+	4375	26	FSM	ENSMUSG00000030016.15	ENSMUST00000113835.10	4356	26	-19	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	103.136026683211	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	83891352	83963853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83956828_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ES_00047194	chr6	+	6312	27	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	162	junction_24	66.2109436064344	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891378	83963851	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ES_00047195	chr6	+	4623	24	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	92.2876451741827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891401	83963851	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ES_00047198	chr6	+	904	3	FSM	ENSMUSG00000030016.15	ENSMUST00000204378.2	904	3	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_1	29.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	6709	False	NA	NA	False	AATAAA	-20	NA	83960583	83963851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83961057_83961758_83961878_83963539
ES_00047209	chr6	+	11278	23	FSM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	0	-115	0	0	multi-exon	FALSE	canonical	3	14	junction_3	14.0492051479525	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCTTAGTCCCTGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	85564627	85679735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85565009_85576826_85576953_85578180_85578374_85584453_85584575_85585967_85587515_85587799_85587919_85592229_85592390_85596415_85600184_85601565_85601700_85604900_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85644848_85644939_85654537_85655692_85671815_85671934_85673074_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ES_00047213	chr6	+	2909	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	-6	-2187	-6	0	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3403	False	NA	22	True	NA	NA	NA	85892713	85907264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
ES_00047214	chr6	+	2103	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3418	False	NA	22	True	NA	NA	NA	85892728	85907264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ES_00047217	chr6	+	687	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	-102	470	-102	0	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATATGGAACTTTTT	NA	False	NA	-20	True	NA	NA	NA	86348183	86355840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
ES_00047220	chr6	+	746	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204380.3	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1590.13130135708	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348552	86355889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86348976_86352658_86352682_86353476_86353602_86355714
ES_00047221	chr6	+	375	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204768.2	375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.61865869764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATATGGAACTTTTT	NA	False	NA	-20	True	NA	NA	NA	86348585	86355840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86348687_86352658_86352682_86353476_86353602_86355714
ES_00047223	chr6	+	4377	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	-70	-1177	8	-43	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCACCATGGCCACGTAT	9705	False	NA	NA	False	NA	NA	NA	86381224	86410344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ES_00047233	chr6	+	971	2	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1475	False	NA	NA	False	ATTAAA	-1	NA	86415377	86416470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86415470_86415591
ES_00047234	chr6	+	2585	10	FSM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	-51	0	-51	0	multi-exon	TRUE	canonical	3	15	junction_1	6.73483664919633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1402	False	NA	NA	False	AATAAA	-26	NA	86415304	86447370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ES_00047236	chr6	+	521	2	FSM	ENSMUSG00000046679.17	ENSMUST00000143430.2	505	2	-16	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1771	False	NA	NA	False	ATTAAA	-1	NA	86415673	86416470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86415830_86416105
ES_00047237	chr6	+	490	2	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCATTTCTCGGGTCTC	1797	False	NA	NA	False	AGTAAA	-15	NA	86415699	86416469	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86415830_86416109
ES_00047239	chr6	+	1641	5	FSM	ENSMUSG00000097048.8	ENSMUST00000204047.3	594	5	-1048	1	0	0	multi-exon	FALSE	canonical	3	43	junction_1	30.036436206714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTGTATTTTTAAATTT	NA	False	NA	8	True	NA	NA	NA	86503252	86541430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86504416_86504872_86504957_86509174_86509290_86540413_86540520_86541257
ES_00047240	chr6	+	612	5	NNC	ENSMUSG00000097048.8	novel	594	5	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	37.6231311828242	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCTGTGTATTTTTAA	NA	False	NA	4	True	NA	NA	NA	86504315	86541426	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86504416_86504872_86504957_86509136_86509290_86540413_86540520_86541257
ES_00047241	chr6	+	1462	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	73	12	73	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGAAAAAAAATGTCATGT	NA	False	NA	NA	False	AATAAA	-10	NA	86605218	86606680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86605200_86606700
ES_00047248	chr6	+	1276	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	-81	0	81	multi-exon	FALSE	canonical	0	0	junction_6	1184.03386248029	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTTTACTACATCCTG	NA	False	NA	106	True	NA	NA	NA	86986217	87005524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ES_00047249	chr6	+	1184	9	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_1	876.96265598941	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986225	87005443	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ES_00047250	chr6	+	952	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	0	-2	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986817	87005443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ES_00047254	chr6	+	1210	5	FSM	ENSMUSG00000029992.15	ENSMUST00000113655.8	1255	5	-20	65	-16	-65	multi-exon	FALSE	canonical	2	10	junction_3	52.8506149443883	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTCTTGGTAATCTATT	9929	False	NA	NA	False	TTTAAA	-38	NA	87019811	87032341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_87019988_87027902_87028011_87030183_87030243_87030732_87030841_87031582
ES_00047265	chr6	+	1572	6	FSM	ENSMUSG00000030060.15	ENSMUST00000113606.2	1572	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	461.093656430014	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	3335	False	NA	44	True	AATAAA	-30	NA	87891287	87913611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
ES_00047279	chr6	+	1636	11	NIC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	2	0	combination_of_known_splicesites	TRUE	canonical	2	7	junction_10	35.1630487870435	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879335	88889213	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88888664
ES_00047287	chr6	+	223	1	FSM	ENSMUSG00000092552.2	ENSMUST00000174329.2	585	1	277	85	277	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAACCTATTTTGCTTG	NA	False	NA	NA	False	AAAAAG	-43	NA	90212947	90213170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90212900_90213200
ES_00047288	chr6	+	4861	6	FSM	ENSMUSG00000034430.17	ENSMUST00000113539.8	4864	6	3	0	1	0	multi-exon	FALSE	canonical	3	93	junction_4	6.06630035524124	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTACTACATGCAAGCCAAC	NA	False	NA	NA	False	AATAAA	-28	NA	90346476	90362066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813
ES_00047292	chr6	+	2355	1	FSM	ENSMUSG00000107451.2	ENSMUST00000205064.2	1221	1	-1129	-5	-1129	5	mono-exon	FALSE	NA	NA	NA	NA	NA	654	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGTACAGAGTTTAAAT	NA	False	NA	NA	False	AATAAA	-20	NA	90454318	90456673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90454300_90456700
ES_00047293	chr6	+	588	2	NNC	ENSMUSG00000108111.2	novel	661	2	NA	NA	32428	7	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGTGTAATTATACAA	9382	False	NA	NA	False	AATACA	-18	NA	90495802	90496469	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_90495862_90495940
ES_00047294	chr6	+	3232	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	-91	1034	-91	0	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527679	90576151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ES_00047295	chr6	+	3068	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	-16	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527770	90576151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ES_00047306	chr6	+	6186	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGGTGTGTTTCGGAGT	NA	False	NA	31	True	AATAAA	-25	NA	91661033	91736047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ES_00047310	chr6	+	6233	16	NIC	ENSMUSG00000030096.9	novel	6186	15	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	119.724387193624	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTCTGGTGTGTTTCGG	NA	False	NA	28	True	AATAAA	-22	NA	91661100	91736044	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_91661290_91675969_91676014_91688492_91688610_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ES_00047312	chr6	+	6040	14	NIC	ENSMUSG00000030096.9	novel	738	6	NA	NA	12	-3	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	98.2890917758943	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTCTGGTGTGTTTCGG	NA	False	NA	28	True	AATAAA	-22	NA	91678649	91736044	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_91678807_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ES_00047315	chr6	+	7635	15	FSM	ENSMUSG00000005893.15	ENSMUST00000113460.8	7647	15	12	0	12	0	multi-exon	FALSE	canonical	3	17	junction_1	9.34732309164457	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGTGTGCTGCTCATCT	NA	False	NA	13	True	ATTAAA	-15	NA	92068382	92150038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_92068724_92115967_92116008_92116760_92116872_92126584_92126786_92129295_92129399_92131315_92131496_92133552_92133701_92134386_92134481_92135310_92135445_92136192_92136371_92137299_92137422_92138893_92139034_92140101_92140240_92141168_92141275_92144439
ES_00047316	chr6	+	7719	16	NIC	ENSMUSG00000005893.15	novel	7647	15	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_1	9.13503633757901	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGTGTGCTGCTCATCT	NA	False	NA	13	True	ATTAAA	-15	NA	92068382	92150038	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_92068724_92082262_92082347_92115967_92116008_92116760_92116872_92126584_92126786_92129295_92129399_92131315_92131496_92133552_92133701_92134386_92134481_92135310_92135445_92136192_92136371_92137299_92137422_92138893_92139034_92140101_92140240_92141168_92141275_92144439
ES_00047318	chr6	+	1104	9	NIC	ENSMUSG00000045100.12	novel	1922	10	NA	NA	0	39	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	12.2983738762488	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAGTCACCAGGAAAGC	NA	False	NA	NA	False	NA	NA	NA	94477313	94580882	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ES_00047320	chr6	+	4529	3	FSM	ENSMUSG00000030031.15	ENSMUST00000119582.3	4518	3	-11	0	-11	0	multi-exon	FALSE	canonical	2	6	junction_1	31	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACTAGTTAGTATTAACA	NA	False	NA	90	True	ATTAAA	-23	NA	95094849	95106771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_95094956_95098719_95099829_95103457
ES_00047324	chr6	+	4565	9	NNC	ENSMUSG00000035158.16	novel	2113	10	NA	NA	16086	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	18.3059928711884	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTTGACCAGTTGTG	4121	False	NA	5	True	ATTAAA	-16	NA	97933964	97998310	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_97934147_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
ES_00047326	chr6	+	1138	1	FSM	ENSMUSG00000079224.6	ENSMUST00000121217.2	438	1	-38	-662	-38	662	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATTTTGAGATGAAA	NA	False	NA	NA	False	AAAAAG	-17	NA	100581605	100582743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_100581600_100582700
ES_00047328	chr6	+	1948	6	FSM	ENSMUSG00000052144.9	ENSMUST00000203580.2	1948	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	232.184926297983	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAGAAACCACCATGATT	NA	False	NA	NA	False	NA	NA	NA	100829537	100844583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842748_100843045_100843217
ES_00047331	chr6	+	1398	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAACTAAATGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	106746126	106758615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ES_00047341	chr6	+	4487	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	-49	5	-49	-5	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGATGCCTCCTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	108760010	108802234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
ES_00047343	chr6	+	5817	12	FSM	ENSMUSG00000030104.10	ENSMUST00000089162.5	5817	12	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_5	22.3007245184901	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTCACTGTGTTTCTCC	NA	False	NA	10	True	ATTAAA	-15	NA	108805634	108836309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_108806195_108813700_108813774_108818560_108818665_108819887_108820060_108821787_108821972_108823632_108823808_108825670_108825792_108826355_108826527_108828170_108828245_108829450_108829548_108831205_108831410_108832427
ES_00047350	chr6	+	649	3	FSM	ENSMUSG00000030264.15	ENSMUST00000134657.3	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	355.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113024375	113027998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113024666_113026299_113026378_113027717
ES_00047354	chr6	+	7150	24	NIC	ENSMUSG00000034269.13	novel	6755	22	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	24.0268438408531	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATCATAATGTTAACAA	7855	False	NA	12	True	NA	NA	NA	113054337	113130385	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086384_113086578_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00047355	chr6	+	6773	23	NNC	ENSMUSG00000034269.13	novel	6755	22	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	24.0981549995049	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATCATAATGTTAACAA	7855	False	NA	12	True	NA	NA	NA	113054337	113130385	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_113054674_113081895_113082083_113086845_113086952_113087334_113087487_113087590_113087632_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00047359	chr6	+	2317	18	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	-3	-2	combination_of_known_junctions	TRUE	canonical	3	55	junction_17	76.4492277859348	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGGCTTTTCATTAGCA	1973	False	NA	11	True	AATAAA	-12	NA	113214808	113258155	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113257563
ES_00047362	chr6	+	232	1	FSM	ENSMUSG00000030270.12	ENSMUST00000204050.2	2933	1	1894	807	1865	37	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCTGAATGGGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	113261190	113261422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113261200_113261400
ES_00047364	chr6	+	4826	13	FSM	ENSMUSG00000001632.17	ENSMUST00000113119.8	4826	13	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	46.1317557533733	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCTTGCCTTCTACTA	287	False	NA	28	True	AATAAA	-16	NA	113284152	113301821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
ES_00047365	chr6	+	4710	14	FSM	ENSMUSG00000001632.17	ENSMUST00000204626.3	4381	14	-89	-240	0	3	multi-exon	FALSE	canonical	3	36	junction_6	42.213040975537	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGCCTTCTACTAGGA	319	False	NA	31	True	AATAAA	-19	NA	113284184	113301824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ES_00047366	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	14	True	AATAAA	-23	NA	113303932	113311149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ES_00047370	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	519.345922772096	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	False	NA	38	True	ATTAAA	-30	NA	113355107	113366613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ES_00047373	chr6	+	1202	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	-55	0	-14	0	multi-exon	FALSE	canonical	3	96	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419515	113425170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113419766_113424218
ES_00047379	chr6	+	2415	5	FSM	ENSMUSG00000034023.17	ENSMUST00000101051.5	2142	5	0	-273	0	273	multi-exon	FALSE	canonical	3	329	junction_3	30.62984655528	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGCCCTCCCAGGCACA	NA	False	NA	NA	False	NA	NA	NA	113508664	113515953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884
ES_00047382	chr6	+	4707	43	FSM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	0	0	0	0	multi-exon	TRUE	canonical	3	81	junction_38	50.0643576738687	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTTTTGCCTCAGCTAC	NA	False	NA	7	True	AATAAA	-8	NA	113508664	113573234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
ES_00047395	chr6	+	2316	19	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	42.2893107353281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620084	114836185	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114753917_114754041_114835951
ES_00047396	chr6	+	2572	20	NNC	ENSMUSG00000030314.17	novel	489	5	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	34.7416264647797	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620125	114836185	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_114620328_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ES_00047398	chr6	+	632	4	FSM	ENSMUSG00000042389.14	ENSMUST00000130425.8	638	4	3	3	3	-3	multi-exon	FALSE	canonical	3	175	junction_1	54.9201440477192	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCAGGTCTCCCAGCCTT	NA	False	NA	NA	False	TATAAA	-20	NA	115521627	115531230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951
ES_00047404	chr6	+	3090	9	NNC	ENSMUSG00000000439.10	novel	6230	8	NA	NA	0	-2931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	164.970451899727	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAAGAAGAAACAGTTGAA	NA	False	NA	NA	False	NA	NA	NA	115578921	115596654	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554_115596373_115596522
ES_00047416	chr6	+	4197	30	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	101	junction_26	58.2477793996823	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185024	116239626	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ES_00047430	chr6	+	1098	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	15	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818202	117822916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117818230_117820213_117820354_117821985
ES_00047431	chr6	+	1140	3	FSM	ENSMUSG00000059689.16	ENSMUST00000223041.2	1128	3	-12	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818202	117822916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117818230_117820213_117820354_117821943
ES_00047432	chr6	+	1192	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112858.8	650	3	0	-542	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818241	117822916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117818359_117820213_117820358_117821985
ES_00047435	chr6	+	2633	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	0	525	0	1	multi-exon	FALSE	canonical	3	13	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCCAATGTGTTCATTTG	NA	False	NA	13	True	TTTAAA	-7	NA	117840037	117849727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117840104_117846178_117846235_117847216
ES_00047439	chr6	+	2152	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-5	0	0	0	multi-exon	TRUE	canonical	3	2150	junction_1	1335.10981654028	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3729	False	NA	NA	False	AATAAA	-14	NA	117883750	117902580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ES_00047441	chr6	+	949	4	ISM	ENSMUSG00000042079.14	ENSMUST00000179224.8	391	5	59	-308	0	139	3prime_fragment	FALSE	canonical	3	521	junction_1	2102.13325510592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCCATTTGGATGCACAA	3788	False	NA	NA	False	NA	NA	NA	117883809	117901067	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_117884170_117894430_117894560_117896059_117896121_117900668
ES_00047442	chr6	+	1042	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	-501	415	-501	0	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAGACAGGGAAAGC	NA	False	NA	NA	False	NA	NA	NA	117893440	117900928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
ES_00047443	chr6	+	2292	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	-12	0	-12	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117894242	117902582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117894560_117896059_117896121_117900668
ES_00047444	chr6	+	323	1	FSM	ENSMUSG00000082791.4	ENSMUST00000118257.2	786	1	50	413	50	-413	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTGAGAAGAGCCGCAAG	NA	False	NA	NA	False	NA	NA	NA	117974217	117974540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117974200_117974500
ES_00047447	chr6	+	1933	9	NNC	ENSMUSG00000041477.15	novel	3313	9	NA	NA	11	7	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	15.8981130955846	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTTTTGTTCCTTGTT	NA	False	NA	16	True	AGTAAA	-23	NA	119152259	119197174	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194694_119194941_119196963
ES_00047448	chr6	+	3522	2	FSM	ENSMUSG00000041477.15	ENSMUST00000127059.2	2048	2	-2875	1401	-2875	7	multi-exon	FALSE	canonical	3	71	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTTTTGTTCCTTGTT	NA	False	NA	16	True	AGTAAA	-23	NA	119191629	119197174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_119194941_119196963
ES_00047451	chr6	+	1617	12	FSM	ENSMUSG00000030166.15	ENSMUST00000032269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_11	16.8914864369477	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	3	True	ATTAAA	-16	NA	119879736	119899784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899435
ES_00047453	chr6	+	1019	1	FSM	ENSMUSG00000030166.15	ENSMUST00000204319.2	3553	1	2725	-191	2725	191	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATAGTGGTTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	119897767	119898786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_119897800_119898800
ES_00047457	chr6	+	10935	28	FSM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	0	9	0	-9	multi-exon	FALSE	canonical	3	38	junction_13	7.14421307921747	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCAGGGCCAAAGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	120341084	120421526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415947
ES_00047458	chr6	+	8694	29	NIC	ENSMUSG00000030180.16	novel	10944	28	NA	NA	0	-2332	combination_of_known_junctions	FALSE	canonical	3	31	junction_28	8.37878759920867	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCTGACTCCTCAAAGT	NA	False	NA	0	True	ATTAAA	-15	NA	120341084	120419203	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415404_120415487_120415947
ES_00047465	chr6	+	9212	19	FSM	ENSMUSG00000071226.12	ENSMUST00000112686.8	9212	19	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_14	26.8930781860498	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCTTTCGTGTATGTG	NA	False	NA	4	True	TATAAA	-17	NA	120643381	120748151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733815_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
ES_00047468	chr6	+	586	4	FSM	ENSMUSG00000009112.5	ENSMUST00000204004.2	2710	4	-14	2138	-14	115	multi-exon	FALSE	canonical	3	188	junction_2	18.3545331972483	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGCAGTTGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	120813158	120842685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528
ES_00047469	chr6	+	6925	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGACTCATCTTTTTGT	NA	False	NA	17	True	AATAAA	-18	NA	120813198	120869803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
ES_00047472	chr6	+	3945	5	FSM	ENSMUSG00000067825.12	ENSMUST00000120066.8	3861	5	-84	0	3	0	multi-exon	FALSE	canonical	2	7	junction_4	16.7406690427832	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATTTCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	121160763	121173144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170473
ES_00047473	chr6	+	1521	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8373	-760	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTATGCCTCTTTCTTT	NA	False	NA	0	True	AATATA	-11	NA	121179281	121203053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
ES_00047476	chr6	+	2539	8	FSM	ENSMUSG00000007458.15	ENSMUST00000112610.2	2539	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	593.666263697931	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122286126_122288562_122288587_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ES_00047477	chr6	+	2976	6	FSM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_4	60.7466871524695	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGTTGCCTCAAGTT	2943	False	NA	11	True	ATTAAA	-18	NA	122285957	122293748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122286126_122289192_122289373_122290217_122292126_122292262_122292394_122293008_122293136_122293286
ES_00047480	chr6	+	1234	5	ISM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	8270	0	-646	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	7085	False	NA	NA	False	TTTAAA	-10	NA	122498811	122506249	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ES_00047481	chr6	+	2328	4	FSM	ENSMUSG00000030116.15	ENSMUST00000126357.2	2491	4	163	0	163	0	multi-exon	FALSE	canonical	3	120	junction_1	13.9522996909709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGTTTGCTGATTTCTGGT	7894	False	NA	7	True	AATACA	-18	NA	122499620	122505594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122501470_122502909_122502998_122503745_122503820_122505277
ES_00047482	chr6	+	556	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	336	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8067	False	NA	4	True	AATACA	-15	NA	122499793	122505591	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ES_00047484	chr6	+	691	4	FSM	ENSMUSG00000046323.9	ENSMUST00000123429.2	691	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	513.829413975754	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	1023	False	NA	24	True	AATAAA	-14	NA	122603711	122607231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122603771_122605535_122605769_122606259_122606296_122606868
ES_00047486	chr6	+	2304	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	-93	0	-14	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684433	122691592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
ES_00047487	chr6	+	2020	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	-9	0	9	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGTCCAGTGGGGTCA	NA	False	NA	27	True	AATAAA	-28	NA	122684523	122691601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
ES_00047489	chr6	+	203	1	Intergenic	novelGene_3533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTGTCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122734438	122734641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_122734400_122734600
ES_00047492	chr6	+	586	5	FSM	ENSMUSG00000030327.9	ENSMUST00000203394.3	638	5	0	52	0	-52	multi-exon	FALSE	canonical	3	578	junction_4	3.64005494464026	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTAGAAGAGGGTGTTGAA	885	False	NA	NA	False	NA	NA	NA	122851529	122859431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226
ES_00047497	chr6	+	2297	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	-16	0	-16	0	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124639973	124681381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ES_00047498	chr6	+	559	3	FSM	ENSMUSG00000004270.14	ENSMUST00000141069.8	550	3	-9	0	0	0	multi-exon	FALSE	canonical	3	738	junction_2	63.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGGCAGACTGTAGCAGTA	NA	False	NA	NA	False	NA	NA	NA	124640134	124676464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124640323_124675032_124675141_124676201
ES_00047499	chr6	+	448	3	FSM	ENSMUSG00000004270.14	ENSMUST00000141546.2	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACACTGAGGGTAGGGGT	NA	False	NA	NA	False	NA	NA	NA	124678381	124679576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124678541_124679198_124679286_124679374
ES_00047501	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_9	595.782978965236	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
ES_00047503	chr6	+	271	1	FSM	ENSMUSG00000088835.3	ENSMUST00000158210.3	271	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGGGGATTCGAGGGCA	NA	False	NA	NA	False	NA	NA	NA	124692194	124692465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124692200_124692500
ES_00047506	chr6	+	1231	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	-13	1	8	-1	multi-exon	FALSE	canonical	3	20	junction_1	6.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTTTCATTATTGTTTT	NA	False	NA	18	True	AGTAAA	-21	NA	124785855	124787581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124785994_124786189_124786933_124787231
ES_00047509	chr6	+	2706	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	-618	-171	70	2	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTTGTCTTGCCTGA	744	False	NA	41	True	NA	NA	NA	124806579	124810666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
ES_00047510	chr6	+	825	5	FSM	ENSMUSG00000030120.15	ENSMUST00000204534.3	806	5	-19	0	0	0	multi-exon	FALSE	canonical	3	3577	junction_3	212.187417157569	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACGTCGGAGATGCGCT	NA	False	NA	NA	False	NA	NA	NA	124908348	124911348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124908550_124909061_124909501_124909739_124909776_124910916_124910971_124911253
ES_00047512	chr6	+	1482	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-7	0	0	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908387	124913108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
ES_00047513	chr6	+	1451	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908438	124913107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
ES_00047516	chr6	+	2396	5	FSM	ENSMUSG00000030329.12	ENSMUST00000162000.4	2396	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.842719282327	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	8198	False	NA	16	True	AATAAA	-16	NA	124973824	124980059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389
ES_00047521	chr6	+	3143	11	FSM	ENSMUSG00000038346.19	ENSMUST00000112428.8	3132	11	-59	48	0	0	multi-exon	FALSE	canonical	0	0	junction_7	64.1467068523397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGGTGTTTTTAGACCA	NA	False	NA	-45	True	TATAAA	-33	NA	124986141	125014780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ES_00047522	chr6	+	3130	10	NIC	ENSMUSG00000038346.19	novel	3132	11	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	84	junction_7	42.3661290288467	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGAGGCAGTGAGCTACT	NA	False	NA	3	True	AATAAA	-14	NA	124986109	125014828	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ES_00047523	chr6	+	3089	11	FSM	ENSMUSG00000038346.19	ENSMUST00000046064.17	3108	11	19	0	19	0	multi-exon	FALSE	canonical	0	0	junction_7	76.603133095194	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGTGAGCTACTGTGTA	NA	False	NA	8	True	AATAAA	-19	NA	124986650	125014833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124986865_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ES_00047526	chr6	+	3210	4	FSM	ENSMUSG00000038346.19	ENSMUST00000137325.2	3200	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	101	junction_1	45.6386775541195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGGTGTTTTTAGACCA	4489	False	NA	-45	True	TATAAA	-33	NA	125007356	125014780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125008817_125010202_125010282_125012675_125012835_125013268
ES_00047527	chr6	+	1708	8	FSM	ENSMUSG00000030330.16	ENSMUST00000140131.8	1446	8	0	-262	0	0	multi-exon	FALSE	canonical	3	42	junction_4	35.3345526679608	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7031	False	NA	6	True	AATAAA	-16	NA	125016722	125026227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024441_125024551_125024755_125024904_125025138_125025201_125025330
ES_00047528	chr6	+	1629	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ES_00047529	chr6	+	1428	7	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7142	False	NA	7	True	AATAAA	-17	NA	125016833	125026228	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ES_00047532	chr6	+	3458	3	FSM	ENSMUSG00000030330.16	ENSMUST00000133695.2	3458	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	29.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	NA	False	NA	7	True	AATAAA	-17	NA	125022484	125026228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125024289_125024444_125025201_125025330
ES_00047534	chr6	+	1895	10	FSM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	-12	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	45.7669890199324	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACGTGCTCTGCTTAGT	NA	False	NA	NA	False	AATAAA	-14	NA	125026909	125040230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039398_125039483_125039898
ES_00047535	chr6	+	217	1	Intergenic	novelGene_3543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGGCCTTTTTCTTTGAC	2574	False	NA	NA	False	NA	NA	NA	125042418	125042635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125042400_125042600
ES_00047539	chr6	+	6678	39	FSM	ENSMUSG00000063870.13	ENSMUST00000056889.15	6697	39	19	0	19	0	multi-exon	FALSE	canonical	3	138	junction_8	108.606041087339	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1627	False	NA	14	True	AATAAA	-18	NA	125072962	125107554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ES_00047540	chr6	+	6507	39	NNC	ENSMUSG00000063870.13	novel	6697	39	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_25	118.681832745466	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1789	False	NA	8	True	AATAAA	-12	NA	125073124	125107548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097170_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ES_00047541	chr6	+	6537	39	FSM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	116.234542355382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1789	False	NA	14	True	AATAAA	-18	NA	125073124	125107554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ES_00047542	chr6	+	1332	9	FSM	ENSMUSG00000063870.13	ENSMUST00000124317.2	1332	9	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_3	52.1530200467816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGAGGAAAATAGCCT	7100	False	NA	-3	True	NA	NA	NA	125090531	125098905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125090553_125090862_125091101_125091253_125091430_125097167_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894
ES_00047547	chr6	+	2844	9	NIC	ENSMUSG00000038271.18	novel	2283	10	NA	NA	-14	-7	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	12.7616368464237	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGCACAAAAGTTGATTGA	8213	False	NA	-2	True	AATAAA	-5	NA	125122189	125138732	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130369_125130466_125136024_125136156_125137495
ES_00047548	chr6	+	3056	8	FSM	ENSMUSG00000038271.18	ENSMUST00000141230.8	3056	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	12.7711409363583	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGATTGAGCCTGCT	8252	False	NA	5	True	AATAAA	-12	NA	125122228	125138739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
ES_00047550	chr6	+	3427	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	10	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGGTTTTCTTCT	NA	False	NA	NA	False	ACTAAA	-15	NA	125169127	125173232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_125169397_125169478_125169590_125170185
ES_00047554	chr6	+	2190	11	NNC	ENSMUSG00000030341.18	novel	2156	10	NA	NA	-6	27984	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	9.91766101457395	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTACCATTCATTATTT	3770	False	NA	NA	False	NA	NA	NA	125326679	125367431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649_125339444_125367399
ES_00047559	chr6	+	696	4	Intergenic	novelGene_3548	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_3	73.0585761944178	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTCTGGTGATTTTCTGT	NA	False	NA	4	True	AATAAA	-18	NA	125409631	125435802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125409775_125409999_125410201_125415223_125415345_125435571
ES_00047561	chr6	+	688	4	Intergenic	novelGene_3547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	63	junction_2	60.7417118260224	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTCTGGTGATTTTCTGT	NA	False	NA	4	True	AATAAA	-18	NA	125409625	125435802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125409775_125409999_125410201_125434610_125434718_125435571
ES_00047562	chr6	+	569	3	Intergenic	novelGene_3549	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_2	85	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGATTTTCTGTTTCT	NA	False	NA	8	True	AATAAA	-22	NA	125409641	125435806	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125409775_125409999_125410201_125435571
ES_00047569	chr6	+	2500	14	NNC	ENSMUSG00000030347.7	novel	2501	14	NA	NA	17	-66	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	31.9594787821026	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGCCCCGCCTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	126916954	126952864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126951982
ES_00047570	chr6	+	2376	14	NIC	ENSMUSG00000030347.7	novel	2501	14	NA	NA	-13	-6	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	30.9083393890222	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGTATAAATTTCATGT	NA	False	NA	NA	False	AATATA	-4	NA	126916978	126952571	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_126917274_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
ES_00047575	chr6	+	1734	7	FSM	ENSMUSG00000037997.13	ENSMUST00000112193.8	1725	7	-9	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.0443461155462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGATTTCTGGTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	127430628	127456018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961
ES_00047576	chr6	+	3817	9	FSM	ENSMUSG00000037997.13	ENSMUST00000039680.7	3746	9	-93	22	10	-1	multi-exon	FALSE	canonical	3	34	junction_4	10.4403065089106	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGCTGCCTGTGTGTGC	NA	False	NA	11	True	ATTAAA	-16	NA	127430592	127471202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
ES_00047581	chr6	+	5859	5	ISM	ENSMUSG00000001517.15	ENSMUST00000073316.13	4652	8	116	253	116	-253	intron_retention	FALSE	canonical	3	167	junction_1	12.031209415516	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCTGGAGGTGATTTA	NA	False	NA	15	True	TATAAA	-28	NA	128340045	128352856	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919
ES_00047590	chr6	+	1578	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	10	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTCTAACACTAT	NA	False	NA	5	True	GATAAA	-16	NA	134391390	134415078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ES_00047593	chr6	+	3632	5	FSM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	-3	0	-3	0	multi-exon	FALSE	canonical	3	17	junction_3	2.06155281280883	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCAGTTGCCTGTTTGAC	NA	False	NA	8	True	AATAAA	-19	NA	134807113	134835894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_134807408_134826065_134826264_134828042_134828188_134829240_134829278_134832936
ES_00047606	chr6	+	7975	16	NNC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	-1	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	57.4034455024745	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTACCCTGACTCATTC	7051	False	NA	20	True	AATAAA	-20	NA	136495802	136587847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584426
ES_00047607	chr6	+	7973	16	NNC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	10	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	72.7557252424547	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTACCCTGACTCATTC	7062	False	NA	20	True	AATAAA	-20	NA	136495813	136587847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_136495962_136536761_136538438_136540757_136540845_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584426
ES_00047609	chr6	+	7952	16	NNC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_15	48.9936957395768	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACTCATTCCAAGAGTTC	7087	False	NA	29	True	AATAAA	-29	NA	136495838	136587856	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584422
ES_00047615	chr6	+	410	1	FSM	ENSMUSG00000108178.2	ENSMUST00000204132.2	385	1	33	-58	33	58	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGCAATGAGACTAGCCTC	NA	False	NA	NA	False	NA	NA	NA	139114157	139114567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_139114200_139114600
ES_00047618	chr6	+	4203	24	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-112	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_15	27.798151738481	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGGTGTTAGAATCTTT	NA	False	NA	17	True	AATAAA	-17	NA	140369667	140542836	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140522952_140523065_140525152_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140541974
ES_00047620	chr6	+	3749	8	FSM	ENSMUSG00000030232.19	ENSMUST00000087614.11	3727	8	-22	0	-22	0	multi-exon	FALSE	canonical	3	238	junction_4	41.8398306470214	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAAATTGTAACAATTC	NA	False	NA	NA	False	AATAAA	-20	NA	140569202	140598552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
ES_00047622	chr6	+	2976	9	NIC	ENSMUSG00000030232.19	novel	2575	9	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	72.0736385580747	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAAATTGTAACAATTC	NA	False	NA	NA	False	AATAAA	-20	NA	140569442	140598552	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
ES_00047623	chr6	+	405	1	FSM	ENSMUSG00000107462.2	ENSMUST00000203682.2	530	1	88	37	88	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCAGTATGCTGGGATCA	NA	False	NA	NA	False	NA	NA	NA	141083860	141084265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_141083900_141084300
ES_00047629	chr6	+	281	1	FSM	ENSMUSG00000107839.2	ENSMUST00000203259.2	387	1	-137	243	-137	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGGAAGTTGGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	142935198	142935479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_142935200_142935500
ES_00047634	chr6	+	1784	17	FSM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	-23	0	-20	0	multi-exon	FALSE	canonical	1	3	junction_1	14.1684894660652	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145091179	145120654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ES_00047636	chr6	+	1360	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	-24	0	6	0	multi-exon	FALSE	canonical	3	42	junction_1	139.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156887	145162265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_145156971_145160909_145160998_145161076
ES_00047637	chr6	+	1640	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111724.8	1618	4	-22	0	-3	0	multi-exon	TRUE	canonical	3	14	junction_1	142.199390528464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156878	145162265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_145156979_145160247_145160511_145160909_145160998_145161076
ES_00047638	chr6	+	2439	3	FSM	ENSMUSG00000040370.14	ENSMUST00000039729.5	2436	3	-3	0	-3	0	multi-exon	FALSE	canonical	3	14	junction_1	153.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	AAAACA	-33	NA	145156878	145162665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_145156979_145160247_145160998_145161076
ES_00047643	chr6	+	940	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	-22	0	-22	0	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146479396	146494363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
ES_00047645	chr6	+	2914	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	-11	-137	-11	137	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCAGCCTATTTGGGGGG	NA	False	NA	NA	False	NA	NA	NA	146479345	146500833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
ES_00047648	chr6	+	694	3	FSM	ENSMUSG00000030291.13	ENSMUST00000125539.8	699	3	5	0	5	0	multi-exon	FALSE	canonical	1	5	junction_1	124.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544049	146552100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_146544151_146550647_146550749_146551608
ES_00047650	chr6	+	1713	3	FSM	ENSMUSG00000030291.13	ENSMUST00000075077.3	1713	3	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_2	43	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146548657	146552100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_146549778_146550647_146550749_146551608
ES_00047652	chr6	+	4550	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTGGGGTGTTTGTTTT	NA	False	NA	15	True	AATAAA	-20	NA	146626492	146680310	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
ES_00047658	chr6	+	5012	18	FSM	ENSMUSG00000016487.16	ENSMUST00000123902.8	5118	18	106	0	106	0	multi-exon	FALSE	canonical	3	236	junction_6	21.7782152032587	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTATTTGTCATTG	NA	False	NA	11	True	AATAAA	-15	NA	146901148	146933521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
ES_00047670	chr6	+	208	2	Antisense	novelGene_ENSMUSG00000095288.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	45	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	148748727	148849864	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_148748779_148849707
ES_00047675	chr6	+	1520	4	FSM	ENSMUSG00000039958.18	ENSMUST00000179873.8	1576	4	56	0	5	0	multi-exon	FALSE	canonical	1	1	junction_1	12.0830459735946	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAGGAACTCAAGTG	NA	False	NA	NA	False	NA	NA	NA	149043066	149052664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_149043203_149045512_149045941_149048655_149048787_149051839
ES_00047680	chr6	+	6107	6	FSM	ENSMUSG00000032712.17	ENSMUST00000100765.11	5356	6	-18	-733	0	0	multi-exon	FALSE	canonical	3	26	junction_2	93.1227147370608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTCTTCATGGTTCT	NA	False	NA	12	True	AATAAA	-24	NA	149210953	149237161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_149211403_149211819_149211876_149226229_149226299_149226902_149231283_149232923_149233005_149236089
ES_00047681	chr6	+	6150	6	NIC	ENSMUSG00000032712.17	novel	6066	5	NA	NA	4	0	combination_of_known_junctions	TRUE	canonical	3	39	junction_3	89.6852273231216	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTCTTCATGGTTCT	NA	False	NA	12	True	AATAAA	-24	NA	149210915	149237161	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_149211403_149211819_149211876_149219132_149219207_149226902_149231283_149232923_149233005_149236089
ES_00047682	chr6	+	6219	7	NIC	ENSMUSG00000032712.17	novel	5356	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_3	80.8489675602327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTCTTCATGGTTCT	NA	False	NA	12	True	AATAAA	-24	NA	149210915	149237161	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902_149231283_149232923_149233005_149236089
ES_00047684	chr6	+	4067	8	FSM	ENSMUSG00000003452.16	ENSMUST00000111513.9	4049	8	-18	0	14	0	multi-exon	FALSE	canonical	3	6	junction_7	6.57763681898362	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAGATA	164	False	NA	NA	False	AATGAA	-12	NA	149310495	149459317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149458141
ES_00047688	chr6	-	5319	2	FSM	ENSMUSG00000047735.15	ENSMUST00000120087.6	5330	2	11	0	11	0	multi-exon	FALSE	canonical	3	6	junction_1	0	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTCTAAATTATTTC	-2	True	NA	NA	False	AATAAA	-20	NA	3399561	3372256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_3377282_3399267
ES_00047689	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	False	NA	0	True	ATTAAA	-22	NA	4086972	4076898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ES_00047690	chr6	-	2457	2	FSM	ENSMUSG00000032757.7	ENSMUST00000150319.2	2461	2	4	0	4	0	multi-exon	FALSE	canonical	3	400	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAGAGAGAGAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	4086968	4080317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_4082583_4086776
ES_00047693	chr6	-	427	1	FSM	ENSMUSG00000083041.3	ENSMUST00000121071.3	427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGCCAGGGATTTGG	NA	False	NA	NA	False	NA	NA	NA	4893778	4893351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_4893400_4893800
ES_00047694	chr6	-	1837	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	-2	True	NA	NA	False	AATAAA	-43	NA	5256286	5220851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
ES_00047695	chr6	-	2318	9	FSM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	91	0	-34	0	multi-exon	FALSE	canonical	2	9	junction_7	2.57087047515039	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGTCTTCTCGAAGCCT	-25	True	NA	NA	False	ATTAAA	-40	NA	5298364	5264146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5289012_5289084_5298211
ES_00047697	chr6	-	3731	11	FSM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	-245	-2	-245	2	multi-exon	FALSE	canonical	2	10	junction_7	4.42831796509691	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTCTTATAAAATTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	5496554	5483348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_5485593_5486677_5486792_5487063_5487175_5487378_5487478_5489134_5489212_5491069_5491148_5491590_5491678_5491829_5492015_5492705_5492778_5494889_5495032_5496032
ES_00047698	chr6	-	3197	18	FSM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	-79	3	-79	-3	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGATTGCTTGCTCTT	NA	False	NA	-7	True	AATAAA	-12	NA	6217252	6041221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ES_00047699	chr6	-	3045	17	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-53	16	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_15	159.387107383251	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTTCCATGATAAATG	NA	False	NA	13	True	AATAAA	-32	NA	6217226	6041201	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6191263_6191318_6216995
ES_00047700	chr6	-	3068	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	590	junction_13	48.4240210344906	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTTGCTCTTGTGTGTTT	20	False	6217138	1	True	AATAAA	-20	NA	6217118	6041213	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ES_00047701	chr6	-	2217	15	NNC	ENSMUSG00000015112.16	novel	616	4	NA	NA	0	169	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	178.774698593349	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGTGTTATTGTTTAT	NA	False	NA	-3	True	AATAAA	-20	NA	6217173	6068097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_6068700_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ES_00047703	chr6	-	1472	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	0	0	0	0	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAGTTATATCAAA	-25	True	NA	NA	False	AATAAA	-17	NA	6578658	6557293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_6558492_6560407_6560502_6578478
ES_00047704	chr6	-	360	1	FSM	ENSMUSG00000042541.11	ENSMUST00000205180.2	2250	1	-5	1895	-5	-1895	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCGCCTCGTCGCTGGGA	17	False	6578685	NA	False	NA	NA	NA	6578668	6578308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_6578300_6578700
ES_00047705	chr6	-	949	1	FSM	ENSMUSG00000093651.2	ENSMUST00000177157.2	1066	1	175	-58	175	58	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACAACAACAAAAAATAAG	NA	False	NA	NA	False	AATAAA	-15	NA	6736317	6735368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_6735400_6736300
ES_00047706	chr6	-	2031	13	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	0	26960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2383.48313486097	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATAATAGACCCGGTTC	1567	False	NA	NA	False	NA	NA	NA	7693254	7648208	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_7648239_7675168_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ES_00047707	chr6	-	2027	13	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	0	26960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2383.48313486097	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATAATAGACCCGGTTC	1567	False	NA	NA	False	NA	NA	NA	7693254	7648208	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_7648240_7675173_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ES_00047708	chr6	-	2438	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	0	-437	0	437	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	4146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCCATAAAACTTCATT	1567	False	NA	-22	True	NA	NA	NA	7693254	7674731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ES_00047709	chr6	-	448	4	FSM	ENSMUSG00000029752.13	ENSMUST00000140097.2	448	4	0	0	0	0	multi-exon	FALSE	canonical	3	8136	junction_3	423.973531668612	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAGGAAGGCTACTTC	NA	False	NA	NA	False	NA	NA	NA	7677385	7675469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230
ES_00047710	chr6	-	526	2	FSM	ENSMUSG00000029752.13	ENSMUST00000133972.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	8132	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGATCTCCTGGCCGC	NA	False	NA	NA	False	NA	NA	NA	7682358	7681276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_7681378_7681933
ES_00047713	chr6	-	843	1	FSM	ENSMUSG00000096403.3	ENSMUST00000178598.3	843	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGGGACATTGATTCG	51	False	NA	NA	False	NA	NA	NA	7983383	7982540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_7982500_7983400
ES_00047714	chr6	-	683	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	0	-13	0	13	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTTATTTTTCAGTCT	NA	False	NA	2	True	AATAAA	-27	NA	8259173	8255922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
ES_00047715	chr6	-	2020	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	59	-4	14	4	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTCCTGTTTGGTTTGT	119	False	NA	3	True	AATAAA	-39	NA	8778425	8630522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
ES_00047716	chr6	-	623	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	0	-13	0	13	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTAATACATTTGAAAG	-31	True	NA	82	True	ACTAAA	-30	NA	11907482	11900277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
ES_00047717	chr6	-	390	1	FSM	ENSMUSG00000057223.7	ENSMUST00000203684.2	560	1	169	1	169	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGAACTAAAAAAATGTTAA	NA	False	NA	NA	False	CATAAA	-25	NA	12100099	12099709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_12099700_12100100
ES_00047718	chr6	-	4532	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	55	0	-1	0	multi-exon	FALSE	canonical	3	155	junction_4	32.9194091684526	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	-14	True	NA	NA	False	AATAAA	-26	NA	13608044	13580685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
ES_00047720	chr6	-	4143	5	FSM	ENSMUSG00000042742.8	ENSMUST00000045235.8	4143	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	9.61769203083567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGTCTGTTACTTGTA	-13	True	NA	1	True	ATTAAA	-20	NA	13677965	13625671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_13629100_13630588_13630704_13641685_13641857_13663200_13663343_13677678
ES_00047721	chr6	-	4114	6	NNC	ENSMUSG00000042742.8	novel	4143	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.2495714250728	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGTCTGTTACTTGTA	-16	True	NA	1	True	ATTAAA	-20	NA	13677968	13625671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_13625882_13625913_13629100_13630588_13630704_13641685_13641857_13663200_13663343_13677678
ES_00047722	chr6	-	1520	1	FSM	ENSMUSG00000048216.14	ENSMUST00000115491.2	2165	1	311	334	311	-334	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTAAATGTGTTGATAAAA	2999	False	NA	NA	False	AATAAA	-14	NA	13836929	13835409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_13835400_13836900
ES_00047723	chr6	-	3117	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	43	17	-9	-17	multi-exon	FALSE	canonical	3	64	junction_2	22	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAAGGTCTTTGTCAAT	858	False	NA	NA	False	AATAAA	-2	NA	13871474	13867750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_13870740_13871054_13871146_13871437
ES_00047724	chr6	-	1735	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	0	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAACTGTGCTCATTTGT	-6	True	NA	NA	False	AATAAA	-23	NA	18109056	18050963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
ES_00047726	chr6	-	784	1	FSM	ENSMUSG00000082289.2	ENSMUST00000121139.2	784	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGACGTCACTCATACAC	79	False	NA	NA	False	CATAAA	-20	NA	18157119	18156335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_18156300_18157100
ES_00047727	chr6	-	5872	23	FSM	ENSMUSG00000000416.17	ENSMUST00000090601.12	5183	23	22	-711	0	-32	multi-exon	FALSE	canonical	0	0	junction_21	3.78366432211941	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTTTGACACCAAATAAAA	33	False	NA	NA	False	AATAAA	-34	NA	18514798	18366508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_18367616_18374522_18374622_18375935_18376069_18378365_18378430_18380461_18380639_18380966_18381173_18382744_18382924_18388026_18388215_18389081_18389235_18397331_18397432_18397516_18397604_18405182_18405263_18406454_18406551_18408480_18408757_18414180_18414299_18420764_18421017_18423829_18423981_18426034_18426135_18427437_18427642_18433818_18435446_18448246_18448469_18501947_18502056_18514653
ES_00047728	chr6	-	524	1	FSM	ENSMUSG00000106736.2	ENSMUST00000202327.2	478	1	-21	-25	-21	25	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAAGTGTTTTCCTTAGA	NA	False	NA	NA	False	AATAAA	-11	NA	22245954	22245430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_22245400_22246000
ES_00047729	chr6	-	2836	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	0	-10	0	10	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAGTGATGTGGGGGGCG	18	False	22356183	10	True	ATTAAA	-32	NA	22356165	22306508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
ES_00047730	chr6	-	1487	9	FSM	ENSMUSG00000029672.17	ENSMUST00000081288.14	1487	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	138.299493853015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGATTTGTGAAAAGCA	NA	False	NA	-21	True	AATAAA	-21	NA	22356242	22307880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22355993
ES_00047731	chr6	-	3371	24	FSM	ENSMUSG00000029695.14	ENSMUST00000031707.14	3701	24	0	330	0	-330	multi-exon	TRUE	canonical	0	0	junction_6	3.81024387829681	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCTCTTGAGTTTTTG	1	True	NA	NA	False	AGTAAA	-17	NA	23132985	23072501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23091197_23091339_23092263_23092373_23092462_23092574_23093894_23094022_23094188_23094311_23096824_23096893_23097141_23097202_23107138_23107251_23107615_23107739_23109425_23109575_23113424_23113553_23113674_23113754_23114839_23114987_23115086_23115155_23118668_23118754_23120875_23121053_23122511_23122737_23132879
ES_00047732	chr6	-	1398	6	FSM	ENSMUSG00000017978.19	ENSMUST00000136279.2	3031	6	0	1633	0	-1633	multi-exon	FALSE	canonical	0	0	junction_4	1.01980390271856	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCGAGTTGATTTTTAA	1	True	NA	NA	False	NA	NA	NA	23839299	23583340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_23583463_23587375_23587613_23599428_23599510_23626491_23626825_23688845_23688960_23838788
ES_00047734	chr6	-	578	5	FSM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	-44	-81	0	80	multi-exon	FALSE	canonical	3	33	junction_4	1535.46725380257	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAAGACAACGCCGTCTT	-4	True	NA	49	True	NA	NA	NA	24527569	24518584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527458
ES_00047735	chr6	-	395	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	-75	-5	-75	5	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCATGTTATTGACTTC	385	False	NA	-26	True	ATTAAA	-32	NA	24527644	24518659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
ES_00047736	chr6	-	538	5	FSM	ENSMUSG00000023089.13	ENSMUST00000023851.9	875	5	337	0	-106	0	multi-exon	FALSE	canonical	3	2597	junction_4	429.359042643799	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	354	False	NA	-31	True	ATTAAA	-27	NA	24527675	24518664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527524
ES_00047737	chr6	-	4354	11	FSM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	0	-2	0	2	multi-exon	FALSE	canonical	3	160	junction_7	20.1893536300695	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTCTCATTTGTTATTA	-9	True	NA	NA	False	AATAAA	-29	NA	24665008	24613801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24616346_24618271_24618381_24619183_24619702_24624234_24624389_24625052_24625096_24626692_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
ES_00047738	chr6	-	1529	1	FSM	ENSMUSG00000106946.2	ENSMUST00000200848.2	2852	1	47	1276	47	-1276	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGCATTCTTATTTACC	4678	False	NA	NA	False	TATAAA	-21	NA	24660321	24658792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24658800_24660300
ES_00047739	chr6	-	3358	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	10	-217	0	217	multi-exon	FALSE	canonical	3	94	junction_8	16.939542404853	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTCTACAAAATACCATT	10	True	NA	NA	False	NA	NA	NA	25809215	25743518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
ES_00047740	chr6	-	3383	17	NIC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	-29	230	combination_of_known_junctions	TRUE	canonical	3	22	junction_14	31.693847983481	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATTGAGTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	25809274	25743505	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25800282_25800510_25805873_25805941_25809173
ES_00047743	chr6	-	3798	1	FSM	ENSMUSG00000106990.2	ENSMUST00000201159.2	3798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTGTGATTGTAGTGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	28214804	28211006	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_28211000_28214800
ES_00047744	chr6	-	1273	1	FSM	ENSMUSG00000107320.2	ENSMUST00000202392.2	7004	1	28	5703	28	-5703	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGCACCATCAACATGT	8972	False	NA	NA	False	NA	NA	NA	28226141	28224868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_28224900_28226100
ES_00047745	chr6	-	3925	6	NIC	ENSMUSG00000039841.15	novel	2699	6	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	11.0381157812373	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCAAGGTGTTATCTTT	3	True	NA	-9	True	ATTAAA	-15	NA	28261922	28239933	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
ES_00047746	chr6	-	4209	6	FSM	ENSMUSG00000039841.15	ENSMUST00000115321.9	2699	6	12	-1522	0	0	multi-exon	FALSE	canonical	3	13	junction_5	13.7927517196533	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTATCTTTTTGTGCAT	15	True	NA	-1	True	ATTAAA	-23	NA	28261910	28239925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261478
ES_00047747	chr6	-	703	5	FSM	ENSMUSG00000039841.15	ENSMUST00000155494.2	703	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	12.1937483982572	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACACCTGAACAAACTGA	-6	True	NA	NA	False	AATATA	-42	NA	28261931	28244483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
ES_00047748	chr6	-	4657	2	FSM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	0	-7	0	7	multi-exon	FALSE	canonical	3	46	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGTTTTTATGTGTAGG	-13	True	NA	NA	False	AATAAA	-23	NA	28421723	28416082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_28419300_28420283
ES_00047749	chr6	-	4239	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	229	-3	229	3	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	237	False	NA	-1	True	NA	NA	NA	29164776	29123571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
ES_00047752	chr6	-	3490	5	FSM	ENSMUSG00000079654.4	ENSMUST00000159200.2	3411	5	-77	-2	-77	2	multi-exon	FALSE	canonical	3	12	junction_2	1.4790199457749	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTTCTGACCTTCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	29179660	29169228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29171568_29176440_29176567_29176901_29177007_29177115_29177831_29179455
ES_00047753	chr6	-	2445	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	0	-8	0	5	multi-exon	TRUE	canonical	1	70	junction_10	46.9877234375763	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTCTGTCCTTTGCC	8	True	NA	7	True	AATAAA	-27	NA	29212296	29200427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
ES_00047754	chr6	-	2586	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	22	-8	0	5	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTCTGTCCTTTGCC	7	False	NA	7	True	AATAAA	-27	NA	29216341	29200427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
ES_00047755	chr6	-	2589	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	0	-9	0	5	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTCTGTCCTTTGCC	7	False	NA	7	True	AATAAA	-27	NA	29216341	29200427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
ES_00047756	chr6	-	4257	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	1	-7	1	7	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTATTTCCCTTCACTA	NA	False	NA	5	True	TTTAAA	-12	NA	29609885	29540818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ES_00047757	chr6	-	3590	24	FSM	ENSMUSG00000012535.15	ENSMUST00000170350.8	3590	24	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_23	180.197874854504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGGAAAGCTGA	31	False	NA	NA	False	AAAAAG	-9	NA	29609810	29541569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
ES_00047760	chr6	-	4684	7	FSM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	-27	0	-27	0	multi-exon	FALSE	canonical	3	201	junction_3	56.6345497220753	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGAACTTGATCTATCA	-24	True	NA	-2	True	AATAAA	-22	NA	30304565	30211287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30304050
ES_00047761	chr6	-	975	5	FSM	ENSMUSG00000039159.17	ENSMUST00000094543.3	975	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	148.302688782099	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGGTTTTTATGAATA	20	True	NA	NA	False	TTTAAA	-23	NA	30304521	30214859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30215083_30221666_30221796_30260927_30261003_30262145_30262223_30304050
ES_00047762	chr6	-	202	1	Intergenic	novelGene_3386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30233665	30233463	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_30233500_30233700
ES_00047767	chr6	-	3484	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	1	0	1	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGAAATCATTTGAA	NA	False	NA	-9	True	AATAAA	-19	NA	30509781	30481226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
ES_00047770	chr6	-	3447	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	NA	False	NA	0	True	ATTAAA	-16	NA	30693748	30653455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ES_00047772	chr6	-	3138	24	FSM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	17	0	-13	0	multi-exon	FALSE	canonical	2	9	junction_2	47.3145369461355	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873712	30748410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30748987_30749404_30749501_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ES_00047773	chr6	-	977	10	FSM	ENSMUSG00000025607.16	ENSMUST00000131256.8	961	10	0	-16	0	16	multi-exon	FALSE	canonical	2	3	junction_1	71.4927260393896	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTATTGTTTTACCTTT	NA	False	NA	NA	False	AATAAA	-30	NA	30873665	30835345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30835553_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ES_00047775	chr6	-	685	1	FSM	ENSMUSG00000086922.3	ENSMUST00000118459.2	685	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCTTCCCCATCCGCT	7118	False	NA	NA	False	NA	NA	NA	31119598	31118913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_31118900_31119600
ES_00047776	chr6	-	5385	8	FSM	ENSMUSG00000025608.10	ENSMUST00000026698.8	5379	8	-6	0	-6	0	multi-exon	FALSE	canonical	3	33	junction_2	7.96164273891016	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGCCCTAGTGTTTTGC	NA	False	NA	1	True	AATAAA	-21	NA	31540922	31496422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_31500155_31501239_31501408_31501604_31501667_31501873_31502028_31503136_31503209_31503481_31503691_31505392_31505972_31540513
ES_00047777	chr6	-	344	3	FSM	ENSMUSG00000025608.10	ENSMUST00000136877.2	344	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.5	1316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCTCCAGACCACCCAAA	NA	False	NA	NA	False	NA	NA	NA	31501246	31499926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_31500155_31500362_31500472_31501239
ES_00047778	chr6	-	1563	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	-13	0	13	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCCTCATGTGTTCCTC	NA	False	NA	3	True	AATAAA	-38	NA	33037195	32769138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ES_00047779	chr6	-	1366	6	FSM	ENSMUSG00000053768.14	ENSMUST00000115091.2	1363	6	0	-3	0	3	multi-exon	FALSE	canonical	3	834	junction_1	31.2089730686545	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTATTAGTTTCTGCTT	NA	False	NA	-9	True	AATAAA	-19	NA	33037152	32828374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ES_00047780	chr6	-	2996	1	FSM	ENSMUSG00000106676.2	ENSMUST00000200761.2	2996	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAAAAAGGAACA	NA	False	NA	NA	False	NA	NA	NA	33019054	33016058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_33016100_33019100
ES_00047781	chr6	-	6220	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	29	4	0	-4	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	738	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGTGTGTCCAATCACC	NA	False	NA	NA	False	AATAAA	-14	NA	34154017	34130318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
ES_00047783	chr6	-	1390	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	-3	0	3	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGGTCCGTTTTGTTC	NA	False	NA	-2	True	AATAAA	-19	NA	34294413	34280865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
ES_00047784	chr6	-	3086	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	0	240	0	-240	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCAGCAAAGCTCTATGG	7597	False	NA	NA	False	NA	NA	NA	34854995	34849014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
ES_00047785	chr6	-	2631	15	NNC	ENSMUSG00000058486.12	novel	2682	15	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	20.522386979758	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5821	False	NA	-1	True	NA	NA	NA	34887766	34857360	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869464_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
ES_00047786	chr6	-	2611	16	NNC	ENSMUSG00000058486.12	novel	2682	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	45	junction_1	13.2587916325567	331	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5816	False	NA	-1	True	NA	NA	NA	34887771	34857360	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_34857585_34857615_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
ES_00047790	chr6	-	2003	12	FSM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	2.56808125305919	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATGAAGAGCATAATCAG	NA	False	NA	NA	False	NA	NA	NA	34965339	34922869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34923272_34925142_34925239_34925332_34925442_34925739_34925905_34930699_34930954_34931904_34932062_34932804_34932926_34933811_34933994_34936389_34936550_34953960_34954119_34955843_34955991_34965287
ES_00047791	chr6	-	267	2	FSM	ENSMUSG00000029847.14	ENSMUST00000134874.2	981	2	9	705	9	228	multi-exon	FALSE	canonical	3	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGCTGCAGGTACCCCA	NA	False	NA	NA	False	NA	NA	NA	34925503	34925142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34925239_34925332
ES_00047792	chr6	-	3202	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202143.4	3202	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	54.0722664588789	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGGGTGAGTCTTGTTC	7745	False	NA	-2	True	AATAAA	-20	NA	35110560	34998999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ES_00047793	chr6	-	3479	12	FSM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	0	-6	0	0	multi-exon	FALSE	canonical	3	79	junction_2	43.8453329687493	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGGGTGAGTCTTGTTC	7681	False	NA	-2	True	AATAAA	-20	NA	35110624	34998999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ES_00047794	chr6	-	3337	11	FSM	ENSMUSG00000038784.14	ENSMUST00000044163.10	3337	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	56.4779603031129	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGATGATGCTAATGTTA	7655	False	NA	NA	False	AATAAA	-11	NA	35110650	35021889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ES_00047795	chr6	-	4509	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	9	-1222	0	1181	multi-exon	FALSE	canonical	3	71	junction_1	41.7378724901018	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGTTTGTGTGCCAGTA	7655	False	NA	NA	False	NA	NA	NA	35110650	35020708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ES_00047796	chr6	-	2705	10	NNC	ENSMUSG00000038784.14	novel	3296	11	NA	NA	69	-177	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	68.7121388452678	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTTCTGAGCAGTGGAC	7814	False	NA	NA	False	NA	NA	NA	35110491	35022107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_35023294_35027996_35028495_35029776_35029839_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ES_00047797	chr6	-	3432	16	FSM	ENSMUSG00000029843.5	ENSMUST00000031868.5	3427	16	0	-5	0	5	multi-exon	FALSE	canonical	2	6	junction_8	3.05213950460256	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAGGTCTACTCCTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	35285066	35244886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35245904_35247278_35247417_35248543_35248706_35251850_35251976_35252575_35252674_35253383_35253486_35255171_35255274_35256345_35256466_35257243_35257432_35260173_35260255_35261564_35261605_35264281_35264337_35264688_35264853_35266728_35266866_35278659_35278789_35284292
ES_00047798	chr6	-	3960	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGCTGCTCATAGAAAAG	4148	False	NA	NA	False	ATTAAA	-15	NA	35516823	35485840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
ES_00047800	chr6	-	7086	12	FSM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	0	-4	0	4	multi-exon	FALSE	canonical	3	82	junction_10	9.34552529156102	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGTCTTTAAATCCTGA	NA	False	NA	4	True	AATAAA	-22	NA	37419081	37304185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
ES_00047801	chr6	-	2639	11	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-41002	3170	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	25.5556256037687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCCTCTTTCATACAA	7970	False	NA	NA	False	ATTAAA	-25	NA	37354472	37308056	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37354383
ES_00047802	chr6	-	244	1	FSM	ENSMUSG00000107035.2	ENSMUST00000201305.2	957	1	942	-229	942	229	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATTTTAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	37663188	37662944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_37662900_37663200
ES_00047803	chr6	-	308	1	FSM	ENSMUSG00000107035.2	ENSMUST00000201305.2	957	1	207	442	207	-442	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGAAAGCTCTCCTGAAG	NA	False	NA	NA	False	NA	NA	NA	37663923	37663615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_37663600_37663900
ES_00047805	chr6	-	3334	6	FSM	ENSMUSG00000063455.17	ENSMUST00000144973.5	3435	6	101	0	101	0	multi-exon	FALSE	canonical	3	6	junction_1	5.9194594347795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAGTTAAGTTTAA	4029	False	NA	NA	False	ATTAAA	-8	NA	38124208	38102954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38105463_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054
ES_00047807	chr6	-	6548	4	FSM	ENSMUSG00000047749.3	ENSMUST00000058524.3	6536	4	0	-12	0	12	multi-exon	FALSE	canonical	3	137	junction_1	7.31816613336672	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGATTTTCTTTTTAATT	NA	False	NA	5	True	AATAAA	-26	NA	38276194	38264318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38270073_38271992_38272255_38274886_38275023_38275798
ES_00047809	chr6	-	5779	13	FSM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	-835	0	-505	0	multi-exon	TRUE	canonical	3	16	junction_3	27.2865453210104	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTCTGTTTATGGTTCT	9819	False	NA	0	True	AATAAA	-32	NA	38332043	38282220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
ES_00047810	chr6	-	3400	9	FSM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.2212673238089	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
ES_00047811	chr6	-	3052	9	FSM	ENSMUSG00000029826.15	ENSMUST00000114898.3	3052	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	27.0081006366608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309424_38310124_38313346_38313600_38317154_38317291_38330849
ES_00047812	chr6	-	203	1	Intergenic	novelGene_3400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTATTATTAT	5811	False	NA	NA	False	NA	NA	NA	38340121	38339918	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_38339900_38340100
ES_00047813	chr6	-	211	2	Antisense	novelGene_ENSMUSG00000029823.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAATGGGGGCTGGCAA	NA	False	NA	NA	False	NA	NA	NA	38562763	38521039	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_38521197_38562709
ES_00047814	chr6	-	2276	5	FSM	ENSMUSG00000071537.7	ENSMUST00000096030.7	2276	5	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_3	4.14578098794425	860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCTCTGTCCCAGAGGT	NA	False	NA	NA	False	AATAAA	-45	NA	38614168	38603594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38604661_38605019_38605124_38606698_38606845_38607215_38607318_38613310
ES_00047815	chr6	-	7684	15	FSM	ENSMUSG00000061436.16	ENSMUST00000161779.8	7684	15	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	5.39131955374677	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCCTCCCTTGATCTCA	NA	False	NA	NA	False	NA	NA	NA	38853099	38671324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38708012_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ES_00047816	chr6	-	3229	12	FSM	ENSMUSG00000038507.7	ENSMUST00000038398.7	3231	12	0	2	0	-2	multi-exon	FALSE	canonical	3	16	junction_11	5.37671748458954	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAGACTGGAGTTTATT	NA	False	NA	NA	False	AATAAA	-17	NA	39095283	39063345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39064575_39065911_39066064_39067132_39067264_39068238_39068315_39070561_39070659_39073469_39073612_39077182_39077379_39079492_39079617_39082823_39082926_39088444_39088746_39091099_39091236_39094740
ES_00047817	chr6	-	9562	20	FSM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	15	-11	15	11	multi-exon	FALSE	canonical	3	12	junction_10	4.65544092368336	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTGTTCCCTTTTTCTG	NA	False	NA	NA	False	TATAAA	-44	NA	39183708	39113545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39120240_39121225_39121494_39122402_39122489_39123788_39123998_39124121_39124271_39124637_39124736_39125875_39126031_39126220_39126346_39128191_39128402_39129746_39129837_39135147_39135240_39142030_39142138_39143600_39143689_39145874_39146038_39147057_39147245_39147702_39147845_39150211_39150373_39152296_39152415_39158461_39158548_39183374
ES_00047818	chr6	-	4351	16	NNC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	2330	3	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_15	89.3692465125572	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGCCCTTAAGTGTGT	NA	False	NA	-5	True	AATAAA	-19	NA	39352222	39311703	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349780_39349862_39351928
ES_00047820	chr6	-	4114	16	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_14	84.3388930973658	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGCCCTTAAGTGTGT	NA	False	NA	-5	True	AATAAA	-19	NA	39354609	39311703	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349780_39349862_39354552
ES_00047821	chr6	-	4173	17	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	43	junction_14	89.544681584112	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGCCCTTAAGTGTGT	NA	False	NA	-5	True	AATAAA	-19	NA	39354609	39311703	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
ES_00047823	chr6	-	2669	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	72.7375113825747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354606	39312918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ES_00047824	chr6	-	3081	18	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_15	99.4312546157579	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354609	39312918	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39349012_39349072_39349780_39349862_39354552
ES_00047825	chr6	-	2086	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	0	8846	0	291	5prime_fragment	FALSE	canonical	3	160	junction_12	41.2501683498248	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGACTGTATAATTAAA	NA	False	NA	1	True	AATAAA	-19	NA	39354609	39320552	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ES_00047830	chr6	-	3047	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	-1	0	1	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTTGTGTGATGACCTG	NA	False	NA	5	True	AATAAA	-25	NA	39397396	39374736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ES_00047831	chr6	-	1517	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	0	-6	0	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGAAATGTCTTCT	NA	False	NA	1	True	AATAAA	-22	NA	39397292	39377687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ES_00047832	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397232	39382472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39382895_39387021_39387151_39397032
ES_00047833	chr6	-	4508	20	NIC	ENSMUSG00000038456.10	novel	4468	19	NA	NA	66	4	combination_of_known_junctions	FALSE	canonical	3	8	junction_18	37.2191235508675	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAGTGAGTGTATAATA	NA	False	NA	-3	True	AATAAA	-25	NA	39534735	39439307	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39504415_39504518_39534508
ES_00047834	chr6	-	4475	19	FSM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	0	-7	0	7	multi-exon	TRUE	canonical	3	100	junction_17	14.1962653756995	1718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGAGTGTATAATATTC	NA	False	NA	0	True	AATAAA	-28	NA	39534801	39439304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39534508
ES_00047837	chr6	-	1802	6	FSM	ENSMUSG00000038456.10	ENSMUST00000154149.2	1787	6	-15	0	-15	0	multi-exon	FALSE	canonical	3	8	junction_4	55.6035970059492	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGAAGAAACTTGAAGC	NA	False	NA	NA	False	NA	NA	NA	39534816	39474070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39504415_39504518_39534508
ES_00047838	chr6	-	4601	1	Genic_Genomic	ENSMUSG00000002413.16	novel	NA	NA	NA	NA	35572	155	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGATAGAGTCTTTGTC	7921	False	NA	NA	False	NA	NA	NA	39584616	39580015	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_39580000_39584600
ES_00047839	chr6	-	3050	19	NIC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	0	896	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	7.19481981002759	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTACTCAGCCTGTGTCT	6711	False	NA	NA	False	NA	NA	NA	39702127	39590149	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ES_00047840	chr6	-	2253	18	FSM	ENSMUSG00000002413.16	ENSMUST00000101497.4	2253	18	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	6.86448157302764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACCCTGAGTGAGACATT	6711	False	NA	NA	False	AAAACA	-43	NA	39702127	39591045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654576_39665177_39665280_39702040
ES_00047841	chr6	-	1107	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTTTGAGACAGTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	39787922	39778737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39779479_39782304_39782546_39787797
ES_00047842	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	481	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787819	39779125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39779479_39782420_39782546_39787797
ES_00047844	chr6	-	5262	9	FSM	ENSMUSG00000036667.15	ENSMUST00000045054.11	5257	9	13	-18	-3	18	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAGATGTGGTTGAGCT	6086	False	NA	NA	False	AATAAA	-34	NA	42687009	42644917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42686892
ES_00047845	chr6	-	2632	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	47	-8	-12	8	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTATTAAGTTCTT	NA	False	NA	2	True	ATTAAA	-27	NA	43643165	43321926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
ES_00047846	chr6	-	391	1	FSM	ENSMUSG00000107465.2	ENSMUST00000203126.2	746	1	79	276	79	-276	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGTCGAAGCTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	43744165	43743774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_43743800_43744200
ES_00047848	chr6	-	3959	1	FSM	ENSMUSG00000079575.4	ENSMUST00000182751.2	1441	1	-90	-2428	-90	2428	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTTCTGTAGATATCT	NA	False	NA	NA	False	AATAAA	-36	NA	46507818	46503859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_46503900_46507800
ES_00047849	chr6	-	2699	2	Antisense	novelGene_ENSMUSG00000039419.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	22	junction_1	0	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACTTTATAGTTGATT	NA	False	NA	NA	False	AATAAA	-23	NA	47167363	47160857	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_47161996_47165802
ES_00047850	chr6	-	7753	2	Antisense	novelGene_ENSMUSG00000039419.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCAGCGGGGCACTTGA	NA	False	NA	NA	False	ATTAAA	-18	NA	47167384	47159489	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_47167209_47167350
ES_00047851	chr6	-	1259	2	Genic_Genomic	ENSMUSG00000107853.2	novel	964	1	NA	NA	-43	355	multi-exon	FALSE	canonical	3	13	junction_1	0	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATCTAACTAAGACAATC	NA	False	NA	NA	False	AATAAA	-42	NA	47410066	47408704	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_47409753_47409855
ES_00047852	chr6	-	834	1	Genic_Genomic	ENSMUSG00000052241.4	novel	NA	NA	NA	NA	-216	73	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTGAGATGAGAAAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	47431470	47430636	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_47430600_47431500
ES_00047853	chr6	-	2891	20	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_17	211.360085807553	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47572275	47507252	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ES_00047854	chr6	-	2791	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	0	-4	0	4	multi-exon	TRUE	canonical	3	406	junction_7	166.792654135859	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTAGTATTGCATGTTAG	NA	False	NA	NA	False	AATAAA	-30	NA	47571964	47507068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ES_00047855	chr6	-	2776	20	FSM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	0	-1	0	1	multi-exon	FALSE	canonical	3	48	junction_12	268.321921839443	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTTAGTATTGCATGT	NA	False	NA	NA	False	AATAAA	-27	NA	47571964	47507071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ES_00047857	chr6	-	2633	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	225	junction_16	191.882044849961	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGTGTTAGTATTGCAT	NA	False	NA	NA	False	AATAAA	-25	NA	47571964	47507073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ES_00047859	chr6	-	2481	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	443	junction_6	133.55213528621	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47571964	47507252	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ES_00047862	chr6	-	2399	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8890	False	NA	23	True	TTTAAA	-24	NA	47790364	47773074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
ES_00047863	chr6	-	449	1	FSM	ENSMUSG00000094557.2	ENSMUST00000080603.4	333	1	-40	-76	-40	76	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAGAAAAAAAAAAAA	8398	False	NA	NA	False	NA	NA	NA	47792606	47792157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47792200_47792600
ES_00047864	chr6	-	2896	4	FSM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	295	0	-4	0	multi-exon	FALSE	canonical	3	13	junction_2	4.64279609239471	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATGCGTTTGGGTTTGC	6015	False	NA	-7	True	AATACA	-20	NA	47807506	47796199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47798636_47801974_47802131_47803895_47804023_47807329
ES_00047867	chr6	-	3264	6	FSM	ENSMUSG00000071477.11	ENSMUST00000095944.10	3184	6	-78	-2	-78	2	multi-exon	FALSE	canonical	3	42	junction_5	33.5463857963865	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGTTTCCTGTTTGCTG	NA	False	NA	-1	True	AATAGA	-16	NA	48025923	48001136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48025626
ES_00047868	chr6	-	5105	7	NNC	ENSMUSG00000071477.11	novel	3111	6	NA	NA	-1109	2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_6	52.1197872426799	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGTTTCCTGTTTGCTG	NA	False	NA	-1	True	AATAGA	-16	NA	48026954	48001136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48022430_48022534_48024919
ES_00047869	chr6	-	3698	7	FSM	ENSMUSG00000057691.9	ENSMUST00000203609.3	3648	7	-36	-14	-36	14	multi-exon	FALSE	canonical	3	21	junction_1	36.5714673238882	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATTCTTAGATATTCAT	1014	False	NA	16	True	AATAAA	-31	NA	48063563	48039314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48041884_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ES_00047870	chr6	-	3719	7	FSM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	-54	-14	-54	14	multi-exon	FALSE	canonical	3	32	junction_1	32.8988348324577	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATTCTTAGATATTCAT	996	False	NA	16	True	AATAAA	-31	NA	48063581	48039314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48041887_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ES_00047871	chr6	-	1384	6	ISM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	14	3729	14	87	5prime_fragment	FALSE	canonical	3	96	junction_1	16.8760184877832	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCTGACTAGTTCGTAAC	1064	False	NA	NA	False	NA	NA	NA	48063513	48043057	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ES_00047872	chr6	-	661	3	FSM	ENSMUSG00000057691.9	ENSMUST00000204771.2	661	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	2.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCCTCCAGGCCCTTG	5365	False	NA	NA	False	NA	NA	NA	48059212	48043144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48043489_48044102_48044295_48059087
ES_00047873	chr6	-	3384	1	FSM	ENSMUSG00000057691.9	ENSMUST00000203890.2	3589	1	198	7	198	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGGTTAACTCCTGT	2631	False	NA	NA	False	NA	NA	NA	48061946	48058562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48058600_48061900
ES_00047874	chr6	-	1953	5	FSM	ENSMUSG00000068551.13	ENSMUST00000114560.8	3266	5	85	1228	79	-201	multi-exon	FALSE	canonical	0	0	junction_1	2.38484800354236	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGCCAAAGCACCAGGAC	NA	False	NA	NA	False	NA	NA	NA	48421939	48414774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48416389_48418880_48418995_48419558_48419673_48420345_48420422_48421904
ES_00047875	chr6	-	1076	1	Intergenic	novelGene_3431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGCTGGAAAAATGGCT	NA	False	NA	NA	False	AATAAA	-26	NA	48500390	48499314	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_48499300_48500400
ES_00047877	chr6	-	1100	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	1	616	multi-exon	FALSE	non_canonical	3	441	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTAAAAATTCTTTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	48502023	48500871	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_48501909_48501960
ES_00047878	chr6	-	738	3	Intergenic	novelGene_3433	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	36	junction_2	7	1454	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCACGTTGAGGGCACC	NA	False	NA	NA	False	NA	NA	NA	48999450	48995421	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_48995945_48997387_48997456_48999303
ES_00047879	chr6	-	926	1	FSM	ENSMUSG00000107990.2	ENSMUST00000204877.2	601	1	-267	-58	-267	58	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTCCTTTTAAAGAAAAA	NA	False	NA	NA	False	TATAAA	-21	NA	49058263	49057337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49057300_49058300
ES_00047880	chr6	-	4345	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTTCTGTAGTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	49191891	49062156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
ES_00047882	chr6	-	721	4	FSM	ENSMUSG00000029814.11	ENSMUST00000203680.2	711	4	0	-10	0	10	multi-exon	FALSE	canonical	3	19	junction_1	219.654273803175	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTCCTTACTTAAGGA	NA	False	NA	7	True	ATTAAA	-32	NA	49191638	49144836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49145040_49145403_49145453_49190200_49190262_49191230
ES_00047883	chr6	-	2080	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	216.729922657209	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4614	False	NA	-4	True	AATAAA	-15	NA	49240943	49220857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221870_49222409_49222542_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741_49230043_49240771
ES_00047884	chr6	-	1780	8	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	183.355125482808	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4613	False	NA	-4	True	AATAAA	-15	NA	49240944	49220857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221870_49222409_49222542_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ES_00047885	chr6	-	1774	8	NNC	ENSMUSG00000029817.12	novel	1777	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	197.460200071419	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4613	False	NA	-4	True	AATAAA	-15	NA	49240944	49220857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221870_49222415_49222542_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ES_00047886	chr6	-	2075	9	NNC	ENSMUSG00000029817.12	novel	1777	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	212.555838251976	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4613	False	NA	-4	True	AATAAA	-15	NA	49240944	49220857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221870_49222415_49222542_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741_49230043_49240771
ES_00047887	chr6	-	1777	8	FSM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	153.460491492044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4613	False	NA	-4	True	AATAAA	-15	NA	49240944	49220857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49221666_49221801_49221870_49222415_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ES_00047888	chr6	-	1799	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ES_00047889	chr6	-	3040	7	FSM	ENSMUSG00000029817.12	ENSMUST00000204818.2	3040	7	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_6	108.605427529608	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4590	False	NA	-8	True	AATAAA	-11	NA	49240967	49220861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49221666_49221801_49221870_49222409_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ES_00047892	chr6	-	5735	1	FSM	ENSMUSG00000029821.16	ENSMUST00000204417.2	4628	1	-904	-203	-904	203	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGCTATAAAAAAATCCC	NA	False	NA	NA	False	NA	NA	NA	50171399	50165664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50165700_50171400
ES_00047893	chr6	-	6720	1	Genic_Genomic	ENSMUSG00000029821.16	novel	NA	NA	NA	NA	-12588	840	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTATATATATGAATAGC	NA	False	NA	NA	False	NA	NA	NA	50183083	50176363	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_50176400_50183100
ES_00047894	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	8766	False	NA	-2	True	ATTAAA	-16	NA	50238749	50184382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
ES_00047895	chr6	-	689	3	FSM	ENSMUSG00000029821.16	ENSMUST00000167893.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	1.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTGCAGCAGCTCATCCA	8509	False	NA	NA	False	NA	NA	NA	50239006	50222944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50223103_50228255_50228494_50238713
ES_00047896	chr6	-	4531	24	NIC	ENSMUSG00000029822.16	novel	4039	22	NA	NA	2	-78	combination_of_known_junctions	TRUE	canonical	2	5	junction_11	3.96439732175821	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGATGTCTGTAGCAGTT	NA	False	NA	NA	False	ATTAAA	-28	NA	50433139	50272744	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50310165_50310274_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
ES_00047898	chr6	-	1649	10	FSM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	0	-2	0	2	multi-exon	FALSE	canonical	3	499	junction_1	2676.86493431088	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCACTGCTACAACTTG	NA	False	NA	NA	False	AATAAA	-18	NA	51446874	51437909	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ES_00047899	chr6	-	1520	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446816	51438100	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ES_00047900	chr6	-	1665	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	-3	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446825	51438100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ES_00047901	chr6	-	1545	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	-3	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446825	51438100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ES_00047902	chr6	-	1703	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ES_00047903	chr6	-	1638	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ES_00047904	chr6	-	1518	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ES_00047905	chr6	-	1728	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	1909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446806	51439739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ES_00047912	chr6	-	2016	2	FSM	ENSMUSG00000038236.9	ENSMUST00000048715.9	2009	2	0	-7	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGACTGCTTTATCCAGA	9954	False	NA	NA	False	AATAAA	-21	NA	52194485	52191470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52193011_52194009
ES_00047914	chr6	-	2565	2	FSM	ENSMUSG00000000938.12	ENSMUST00000125581.2	2565	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTAATTTCACCTCTT	9663	False	NA	-13	True	AATAAA	-15	NA	52211919	52208176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52209761_52210938
ES_00047918	chr6	-	2210	2	FSM	ENSMUSG00000038203.22	ENSMUST00000147595.7	2400	2	190	0	189	0	multi-exon	FALSE	canonical	2	3	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAATTAGATCTGTAGA	8213	False	NA	NA	False	ACTAAA	-3	NA	52237598	52234673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52236129_52236843
ES_00047919	chr6	-	277	2	Genic_Genomic	ENSMUSG00000059159.7	novel	213	1	NA	NA	0	2244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGGTGAAATGTGAACAA	NA	False	NA	NA	False	NA	NA	NA	52323927	52321470	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_52321496_52323675
ES_00047920	chr6	-	293	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	0	-80	0	80	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACATCAAGCCGGGTGG	NA	False	NA	NA	False	NA	NA	NA	52323927	52323634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52323600_52323900
ES_00047921	chr6	-	1836	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	-11	0	11	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTGTCTCTTAAGG	2839	False	NA	10	True	AATAAA	-31	NA	52617374	52523201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
ES_00047925	chr6	-	4806	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	2	2	2	-2	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGGAGCCTCTTGTTT	NA	False	NA	-2	True	AATAAA	-15	NA	54543472	54482876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
ES_00047926	chr6	-	2770	5	FSM	ENSMUSG00000038074.17	ENSMUST00000155047.6	2754	5	0	-16	0	15	multi-exon	FALSE	canonical	1	1	junction_2	9.78199877325692	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATACATGTGTGTGGTGTT	NA	False	NA	15	True	AATAAA	-34	NA	54570133	54554573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_54556672_54562787_54562916_54563980_54564071_54566257_54566410_54569831
ES_00047927	chr6	-	2766	4	FSM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	-73	1	-73	0	multi-exon	FALSE	canonical	3	17	junction_2	2.16024689946929	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTTGTACATGTGCAT	NA	False	NA	-1	True	AATAAA	-18	NA	54570235	54554589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_54556672_54562787_54562916_54566257_54566410_54569831
ES_00047928	chr6	-	4129	12	FSM	ENSMUSG00000038058.15	ENSMUST00000060655.15	4315	12	187	-1	187	1	multi-exon	FALSE	canonical	2	6	junction_10	5.88175495258975	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTTCTAATGGCCAAGT	NA	False	NA	NA	False	AATAAA	-16	NA	54949410	54900932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115_54921941_54924933_54925109_54926416_54926739_54949253
ES_00047930	chr6	-	759	4	FSM	ENSMUSG00000091625.9	ENSMUST00000175865.6	757	4	0	-2	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	255.422525762053	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681662	56678047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56678275_56679080_56679154_56679990_56680395_56681607
ES_00047932	chr6	-	274	4	FSM	ENSMUSG00000091625.9	ENSMUST00000176595.3	274	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	741.839755083416	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACGTTGTTTTCAAACCTT	NA	False	NA	NA	False	NA	NA	NA	56681668	56678230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56678275_56679080_56679154_56680298_56680395_56681607
ES_00047933	chr6	-	3816	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTTTTGGTTTT	9703	False	NA	0	True	AATAAA	-17	NA	56774721	56754508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
ES_00047934	chr6	-	3869	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114321.2	3868	4	0	-1	0	0	multi-exon	FALSE	canonical	3	30	junction_3	71.2569684701472	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTTTTGGTTTT	9626	False	NA	0	True	AATAAA	-17	NA	56774798	56754508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774467
ES_00047936	chr6	-	1676	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1204	False	NA	0	True	AATAAA	-26	NA	56900917	56859384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
ES_00047937	chr6	-	4764	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	-122	-3575	-9	3024	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATAAAGCCAGATGATAT	1195	False	NA	NA	False	AATAAA	-3	NA	56900926	56856360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
ES_00047946	chr6	-	442	2	NNC	ENSMUSG00000107479.2	novel	479	2	NA	NA	-20	7	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	151	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGTGGCCATGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	66442742	66431170	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_66431365_66442494
ES_00047947	chr6	-	530	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-28	-79	-28	79	mono-exon	FALSE	NA	NA	NA	NA	NA	734	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGGACCAGAAAAGAAATT	NA	False	NA	19	True	NA	NA	NA	66852755	66852225	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_66852200_66852800
ES_00047948	chr6	-	1231	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	-8	0	8	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACGTGTGGTTTGTGTTT	NA	False	NA	1	True	AATAAA	-27	NA	67014390	67012071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
ES_00047949	chr6	-	824	3	FSM	ENSMUSG00000036390.9	ENSMUST00000126194.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	4	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAGGAGACAGACCTTAT	NA	False	NA	NA	False	NA	NA	NA	67014361	67013354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_67013900_67013993_67014096_67014184
ES_00047952	chr6	-	2000	1	FSM	ENSMUSG00000105687.2	ENSMUST00000199935.2	1897	1	-148	45	-148	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTACCAGCCGTGCAG	NA	False	NA	NA	False	NA	NA	NA	70407957	70405957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_70406000_70408000
ES_00047953	chr6	-	1772	9	FSM	ENSMUSG00000053604.6	ENSMUST00000066134.6	1829	9	57	0	57	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTCTTCTCTGCCGA	8062	False	NA	-5	True	AATAAA	-20	NA	70769159	70742703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_70743633_70747977_70748078_70750413_70750556_70751234_70751304_70752092_70752158_70754335_70754396_70760544_70760601_70762528_70762590_70768869
ES_00047954	chr6	-	1773	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	72	232	-20	0	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGTGTTTTGTTTTGTT	NA	False	NA	0	True	NA	NA	NA	71121351	71105381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
ES_00047955	chr6	-	6165	9	FSM	ENSMUSG00000002222.15	ENSMUST00000002292.15	6165	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_4	25.5828922328966	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGATCCAGTTTGTGA	NA	False	NA	0	True	ATTAAA	-25	NA	71417621	71365617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
ES_00047956	chr6	-	3768	6	FSM	ENSMUSG00000002222.15	ENSMUST00000149415.2	3768	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	59.0748677527085	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACTGATACTCTCTGCT	NA	False	NA	NA	False	AATAAA	-27	NA	71376277	71365870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71368962_71370086_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110
ES_00047957	chr6	-	4933	10	NIC	ENSMUSG00000002222.15	novel	6165	9	NA	NA	101	-6	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	48.3600181764305	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTTTGTGGATCCAGT	NA	False	NA	-6	True	ATTAAA	-19	NA	71417520	71365623	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_71368962_71370086_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
ES_00047958	chr6	-	4821	27	FSM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	0	-5	0	5	multi-exon	FALSE	canonical	3	176	junction_18	110.285703472991	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATTTCTTAGTGACTA	NA	False	NA	1	True	AATAAA	-23	NA	71609889	71565950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
ES_00047959	chr6	-	4753	26	FSM	ENSMUSG00000053470.14	ENSMUST00000207023.2	4753	26	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_25	126.668929102602	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGTTCTTTGTCCTTT	NA	False	NA	-17	True	ATTAAA	-19	NA	71609974	71566020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609821
ES_00047960	chr6	-	3128	17	NNC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	54	-1	at_least_one_novel_splicesite	FALSE	canonical	1	20	junction_4	123.284668045139	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGCTGTTCTTTGTCCTT	NA	False	NA	-18	True	ATTAAA	-18	NA	71586069	71566021	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568976_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
ES_00047961	chr6	-	3188	17	NIC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	60	-1	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAGATAATCATTTCTT	NA	False	NA	-7	True	AATAAA	-15	NA	71586063	71565958	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
ES_00047962	chr6	-	4800	28	NNC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	20	junction_4	141.932256489139	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGCTGTTCTTTGTCCTT	NA	False	NA	-18	True	ATTAAA	-18	NA	71609889	71566021	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568976_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
ES_00047966	chr6	-	746	1	FSM	ENSMUSG00000108772.2	ENSMUST00000206958.2	485	1	-42	-219	-42	219	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTCATTTACAGAGGTAT	NA	False	NA	NA	False	AATAAA	-31	NA	71619122	71618376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71618400_71619100
ES_00047967	chr6	-	3847	4	FSM	ENSMUSG00000052962.4	ENSMUST00000205435.2	707	4	76	-3216	76	50	multi-exon	FALSE	canonical	1	35	junction_3	666.396445235284	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTTAGTTTCTAGTC	NA	False	NA	NA	False	NA	NA	NA	71800671	71789930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800500
ES_00047969	chr6	-	566	1	FSM	ENSMUSG00000108466.2	ENSMUST00000206975.2	626	1	-142	202	-142	-202	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGTGGGACTCACCCCG	NA	False	NA	NA	False	NA	NA	NA	71808836	71808270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71808300_71808800
ES_00047971	chr6	-	1161	3	FSM	ENSMUSG00000063884.7	ENSMUST00000205269.2	1161	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	68	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	NA	False	NA	-1	True	AATAAA	-28	NA	71859579	71857621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71858216_71858489_71858649_71859171
ES_00047972	chr6	-	2548	23	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	211.907418775822	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3054	False	NA	-1	True	AATAAA	-28	NA	71885728	71857621	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ES_00047974	chr6	-	2364	9	FSM	ENSMUSG00000063884.7	ENSMUST00000205691.2	2364	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	328.920963150724	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	NA	False	NA	-6	True	AATAAA	-23	NA	71866663	71857626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577
ES_00047976	chr6	-	2680	17	FSM	ENSMUSG00000063884.7	ENSMUST00000205761.2	2680	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	239.472042992496	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAAATAGGCTTGGG	3054	False	NA	NA	False	NA	NA	NA	71885728	71864237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ES_00047984	chr6	-	3387	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416539	72409781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ES_00047985	chr6	-	1400	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	259.956697115116	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATACTTTCGCCATGA	NA	False	NA	NA	False	AATAAA	-25	NA	72416539	72411527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ES_00047989	chr6	-	3522	13	Fusion	ENSMUSG00000055799.14_ENSMUSG00000056429.5	novel	3042	12	NA	NA	-261	-237	multi-exon	FALSE	non_canonical	0	0	junction_1	121.658989483812	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAATGTTGAAATTTTT	4562	False	NA	NA	False	NA	NA	NA	72766498	72585651	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_-_72585871_72603360_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72626102_72626187_72765193_72765322_72765544_72765609_72765692
ES_00047990	chr6	-	373	1	ISM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	6796	1400	6796	-1400	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGACCTTAGGGGTCAAAT	NA	False	NA	NA	False	AAGAAA	-43	NA	72587187	72586814	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_72586800_72587200
ES_00047993	chr6	-	2190	13	FSM	ENSMUSG00000055799.14	ENSMUST00000114053.9	1888	13	-302	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	90.8812946772999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTCAATATTTGACCACT	4823	False	NA	NA	False	NA	NA	NA	72766237	72604254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72625783_72625826_72626102_72626187_72765193_72765322_72765544_72765609_72765692
ES_00047996	chr6	-	1743	7	FSM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	409.390196918946	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTGTGTGTATTTAT	9152	False	NA	-84	True	NA	NA	NA	72876275	72819551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72875962
ES_00047999	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	2257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	False	NA	-11	True	AATAAA	-20	NA	72935471	72934329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72934636_72934895_72935008_72935319
ES_00048000	chr6	-	750	2	Genic_Genomic	ENSMUSG00000107951.2	novel	1942	1	NA	NA	1315	2067	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAGCAGACACCAACCC	NA	False	NA	NA	False	NA	NA	NA	75273727	75271033	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_75271076_75273019
ES_00048001	chr6	-	2021	1	FSM	ENSMUSG00000107951.2	ENSMUST00000204734.2	1942	1	2	-81	2	81	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	75275040	75273019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_75273000_75275000
ES_00048003	chr6	-	2475	1	FSM	ENSMUSG00000072476.7	ENSMUST00000097218.7	2353	1	-126	4	-126	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGTCACGAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	76474893	76472418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_76472400_76474900
ES_00048004	chr6	-	4957	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	8	35	8	-35	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTAGCAGGCAGTGGGCC	NA	False	NA	NA	False	NA	NA	NA	81942931	81934866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ES_00048006	chr6	-	1150	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	9	638	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTCTTTATTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	82629842	82595334	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
ES_00048007	chr6	-	574	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	-117	0	-117	0	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATCATACCCCTGCT	5992	False	NA	NA	False	NA	NA	NA	82682463	82595972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
ES_00048008	chr6	-	1769	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	NA	False	NA	1	True	ATTAAA	-27	NA	82629910	82623681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ES_00048010	chr6	-	999	4	NIC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	10	-22	combination_of_known_junctions	FALSE	canonical	3	146	junction_3	397.998604129322	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATACCCTTTAAGTTGTG	6119	False	NA	-58	True	TTTAAA	-24	NA	82682336	82624318	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163
ES_00048014	chr6	-	2417	12	FSM	ENSMUSG00000000627.16	ENSMUST00000203911.3	2907	12	21	469	21	-469	multi-exon	FALSE	canonical	3	23	junction_7	3.39177420112321	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAACTTTGAGGCCGGT	NA	False	NA	NA	False	NA	NA	NA	82916729	82893671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_82894464_82894569_82894680_82894803_82895027_82895164_82895313_82895512_82895692_82896297_82896450_82896543_82896664_82907878_82907973_82912567_82912667_82912875_82912936_82914041_82914194_82916441
ES_00048016	chr6	-	1973	4	FSM	ENSMUSG00000068335.7	ENSMUST00000149918.2	1966	4	1	-8	1	2	multi-exon	FALSE	canonical	2	3	junction_3	15.121728296285	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGCGTATGAATGAGCA	NA	False	NA	-2	True	ATTAAA	-21	NA	83010448	83007912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83009397_83009515_83009610_83009747_83010046_83010351
ES_00048018	chr6	-	1726	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	0	-1	0	1	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGGTTGGATCTTCTCCC	1897	False	NA	3	True	AATAAA	-32	NA	83031552	83028245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ES_00048019	chr6	-	2531	7	FSM	ENSMUSG00000068329.13	ENSMUST00000154829.8	2512	7	0	-19	0	1	multi-exon	FALSE	canonical	3	465	junction_4	56.9846470551499	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGGTTGGATCTTCTCCC	1195	False	NA	3	True	AATAAA	-32	NA	83032254	83028245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593
ES_00048020	chr6	-	745	7	FSM	ENSMUSG00000068329.13	ENSMUST00000132099.8	745	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	197.549993672488	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGGAGTCAGTGAACC	2782	False	NA	-119	True	NA	NA	NA	83030667	83028367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593
ES_00048023	chr6	-	1522	2	FSM	ENSMUSG00000068327.6	ENSMUST00000174674.3	1514	2	0	-8	0	8	multi-exon	FALSE	canonical	3	96	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCAGTTGTCTCCTGCCC	7244	False	NA	2	True	AAAACA	-28	NA	83047206	83045296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83046273_83046660
ES_00048024	chr6	-	1419	5	FSM	ENSMUSG00000030035.15	ENSMUST00000032111.11	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	18.4390889145858	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097858_83098183
ES_00048025	chr6	-	1340	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	-13	-13	-13	13	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAGTAGATCTCAGCTC	NA	False	NA	6	True	ATTAAA	-30	NA	83098553	83096011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
ES_00048027	chr6	-	1503	5	FSM	ENSMUSG00000030034.13	ENSMUST00000113935.9	1503	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_3	6.41774882649672	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTATCGAATTGCTGGA	NA	False	NA	-10	True	ATTAAA	-18	NA	83102412	83098745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83099346_83100974_83101145_83101287_83101407_83101565_83101759_83101991
ES_00048028	chr6	-	4494	10	FSM	ENSMUSG00000030032.15	ENSMUST00000153148.8	4634	10	140	0	8	0	multi-exon	FALSE	canonical	3	33	junction_4	3.94405318873308	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTCCTGTTTTCCTG	NA	False	NA	NA	False	AAGAAA	-17	NA	83133239	83126341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156
ES_00048029	chr6	-	1210	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	6	0	6	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9888	False	NA	0	True	TATAAA	-18	NA	83133373	83129690	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
ES_00048030	chr6	-	1271	11	NIC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	23	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	13.7786066058945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCAAGTCCTTGTCTGA	9923	False	NA	-8	True	TATAAA	-10	NA	83133338	83129698	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132223_83132459_83132523_83132630_83132854_83133156_83133228_83133296
ES_00048031	chr6	-	2085	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	2	True	AATAAA	-35	NA	83294588	83282672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ES_00048032	chr6	-	530	2	FSM	ENSMUSG00000005667.9	ENSMUST00000203375.2	612	2	82	0	82	0	multi-exon	FALSE	canonical	3	2400	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCAATGCCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	83289305	83288326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83288345_83288793
ES_00048034	chr6	-	1112	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	0	-5	0	5	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCGTTTATTTCAGGAT	NA	False	NA	2	True	AATAAA	-28	NA	83483951	83457193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ES_00048043	chr6	-	2115	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	256	-7	-34	0	multi-exon	FALSE	canonical	3	22	junction_4	7.14920352984241	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGAGTGATTTGTCTGA	NA	False	NA	-10	True	AATAAA	-20	NA	83549455	83520198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
ES_00048044	chr6	-	1907	10	FSM	ENSMUSG00000006906.11	ENSMUST00000206592.2	2152	10	245	0	245	0	multi-exon	FALSE	canonical	1	1	junction_9	11.8582158839607	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATGTAAATTATAAAA	NA	False	NA	NA	False	NA	NA	NA	83549154	83520743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83548754
ES_00048047	chr6	-	1245	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5445	11	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_3	35.8712977183709	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTTTGCTTTGCTTGTGG	2729	False	NA	0	True	NA	NA	NA	83675080	83669776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_83670449_83671329_83671456_83672566_83672797_83673961_83674051_83674952
ES_00048048	chr6	-	1379	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5455	13	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	36.2724068680312	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTTGCTTGTGGTT	2739	False	NA	2	True	NA	NA	NA	83675070	83669774	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_83670449_83671329_83671456_83672566_83672939_83673961_83674051_83674952
ES_00048049	chr6	-	1255	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5465	13	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	37.4799946638203	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTTGCTTGTGGTT	2749	False	NA	2	True	NA	NA	NA	83675060	83669774	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_83670449_83671329_83671456_83672566_83672825_83673961_83674051_83674952
ES_00048050	chr6	-	1183	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	118	-4	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	54.2471197392083	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAGATTTAGGCGGACT	NA	False	NA	-15	True	NA	NA	NA	83687796	83669791	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_83670449_83671329_83671456_83672566_83672797_83673961_83674051_83687715
ES_00048051	chr6	-	1175	4	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5430	15	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	58.7329171381395	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTTTGCTTGTGGTTGG	2714	False	NA	4	True	NA	NA	NA	83675095	83669772	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_83670449_83671329_83671456_83672566_83672797_83674952
ES_00048052	chr6	-	257	1	FSM	ENSMUSG00000099354.7	ENSMUST00000190077.2	1110	1	814	39	457	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCTATATAATGAATAAAC	NA	False	NA	NA	False	NA	NA	NA	83739033	83738776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83738800_83739000
ES_00048054	chr6	-	2265	4	FSM	ENSMUSG00000014748.14	ENSMUST00000125614.8	2265	4	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_1	49.358101890391	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9735	False	NA	NA	False	AAAAAG	-38	NA	83752772	83747397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83749292_83750691_83750846_83751999_83752080_83752635
ES_00048055	chr6	-	3974	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	7	1	7	-1	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACCTGGCCTCTGTCTAT	NA	False	NA	NA	False	AATAAA	-12	NA	83808716	83782383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
ES_00048058	chr6	-	1383	14	FSM	ENSMUSG00000033769.17	ENSMUST00000162821.8	1383	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_13	65.3713108635865	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTTCCTTTCTCTGA	NA	False	NA	NA	False	NA	NA	NA	85046484	84828930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_85046277
ES_00048059	chr6	-	572	3	FSM	ENSMUSG00000033769.17	ENSMUST00000162786.2	565	3	0	-7	0	7	multi-exon	FALSE	canonical	3	244	junction_1	24	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGAGTAGTCTGCCAT	NA	False	NA	NA	False	AATAAA	-38	NA	85046457	84981792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_84982019_84988299_84988466_85046277
ES_00048061	chr6	-	4035	5	FSM	ENSMUSG00000051343.12	ENSMUST00000060837.10	4035	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	41.9344726925235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTTTGTTTTGAA	NA	False	NA	3	True	AATAAA	-21	NA	85351546	85311943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85314209_85314462_85314653_85324761_85325438_85325536_85325974_85351079
ES_00048063	chr6	-	5878	6	NNC	ENSMUSG00000051343.12	novel	6119	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	18	junction_3	44.0817422523203	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTTTGTTTTGAA	NA	False	NA	3	True	AATAAA	-21	NA	85351670	85311943	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_85314209_85314462_85314653_85317324_85319044_85324761_85325438_85325536_85325974_85351079
ES_00048065	chr6	-	1423	4	FSM	ENSMUSG00000030008.10	ENSMUST00000139875.8	1000	4	-25	-398	0	0	multi-exon	FALSE	canonical	3	19	junction_1	61.5593661074865	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428952	85423791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85424790_85424917_85425028_85425472_85425574_85428738
ES_00048068	chr6	-	953	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCAGCTCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	85428952	85423919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
ES_00048071	chr6	-	1014	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	-3	-3	-3	0	multi-exon	FALSE	canonical	3	9	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAATGCATGTGATGGCT	9871	False	NA	NA	False	NA	NA	NA	85892662	85887135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85888003_85892515
ES_00048073	chr6	-	877	4	FSM	ENSMUSG00000030002.16	ENSMUST00000151394.8	877	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	97.7218274264023	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTACCACAGCTAATTCC	7320	False	NA	NA	False	AATACA	-21	NA	85938649	85931943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85932383_85935565_85935698_85936197_85936274_85938419
ES_00048075	chr6	-	543	2	FSM	ENSMUSG00000029998.15	ENSMUST00000129650.2	779	2	236	0	236	0	multi-exon	FALSE	canonical	3	179	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAGCAGCTGGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	86373372	86371499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86371566_86372895
ES_00048081	chr6	-	4664	6	FSM	ENSMUSG00000001156.10	ENSMUST00000001184.10	4666	6	0	2	0	-2	multi-exon	FALSE	canonical	3	13	junction_5	4.44522215417857	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTCTTCCTGTGTCCC	4023	False	NA	NA	False	AATAAA	-17	NA	86646143	86624025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86628062_86628423_86628584_86630066_86630182_86640052_86640083_86645519_86645617_86645917
ES_00048082	chr6	-	985	7	Fusion	ENSMUSG00000108291.2_ENSMUSG00000001158.14	novel	885	6	NA	NA	0	-1986	multi-exon	TRUE	non_canonical	0	0	junction_1	729.019528011577	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGCCAGCACCATTTCC	7677	False	NA	NA	False	NA	NA	NA	86661473	86642155	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_-_86642351_86652196_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ES_00048083	chr6	-	957	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	5	-77	0	77	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTAGCTCCGGGTTGCT	7651	False	NA	78	True	NA	NA	NA	86661499	86652055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ES_00048086	chr6	-	2970	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	0	-21	0	21	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAAAAGCTTATTGAAAC	NA	False	NA	3	True	AATAAA	-41	NA	86710365	86668728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
ES_00048089	chr6	-	2062	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	20	-80	0	79	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATACTAAATTTACTAAGG	4626	False	NA	78	True	NA	NA	NA	86770546	86713742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
ES_00048091	chr6	-	1171	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	12	-141	12	141	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGGTGGCTCACGTCT	NA	False	NA	NA	False	AATAAA	-19	NA	86826410	86825239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86825200_86826400
ES_00048092	chr6	-	221	2	Antisense	novelGene_ENSMUSG00000107576.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86948525	86919432	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_86919591_86948462
ES_00048093	chr6	-	941	2	FSM	ENSMUSG00000030047.15	ENSMUST00000203559.2	736	2	417	-622	417	-88	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGGCTGAACTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	87440212	87436474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87437116_87439912
ES_00048094	chr6	-	3132	10	FSM	ENSMUSG00000030051.11	ENSMUST00000065997.5	3132	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	19.726525352153	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGCTTATTTGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	87649129	87605405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648971
ES_00048095	chr6	-	2874	11	NNC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	0	-25	intron_retention	FALSE	non_canonical	0	0	junction_1	21.1697897958388	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAAATATTTCTCTATT	NA	False	NA	NA	False	AAGAAA	-4	NA	87649175	87605430	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_87605573_87605981_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ES_00048096	chr6	-	1587	10	FSM	ENSMUSG00000030051.11	ENSMUST00000203209.3	1587	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	20.7632153365299	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGATCTTCTGCCCTGA	NA	False	NA	-7	True	AATAAA	-20	NA	87649046	87606725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640698_87645397_87645470_87648971
ES_00048098	chr6	-	3590	6	FSM	ENSMUSG00000030051.11	ENSMUST00000203776.2	3588	6	0	-2	0	2	multi-exon	FALSE	canonical	2	6	junction_2	26.5028300375639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGTCTCTTATTTGA	NA	False	NA	NA	False	CATAAA	-19	NA	87649111	87628070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87630875_87635414_87635538_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ES_00048099	chr6	-	1344	1	FSM	ENSMUSG00000068262.5	ENSMUST00000089501.5	1209	1	-27	-108	-27	108	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAAGCAAGCAAGCTGG	2073	False	NA	NA	False	NA	NA	NA	87743213	87741869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87741900_87743200
ES_00048100	chr6	-	4593	3	FSM	ENSMUSG00000030055.17	ENSMUST00000078647.11	4605	3	0	12	0	0	multi-exon	FALSE	canonical	3	38	junction_1	1	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGCTCAAGCATGGTC	2694	False	NA	-5	True	ATTAAA	-15	NA	87788761	87765846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87769823_87771595_87771780_87788328
ES_00048101	chr6	-	5843	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	0	-6	0	6	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAAGGTGTGATTT	NA	False	NA	NA	False	AATACA	-23	NA	87815780	87791244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ES_00048103	chr6	-	2760	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	76	-661	0	661	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGCCCGTGTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	87828012	87818935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ES_00048105	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_3	4411.10218652889	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828012	87820063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
ES_00048106	chr6	-	1661	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	0	0	0	0	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828062	87820063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
ES_00048112	chr6	-	1218	1	FSM	ENSMUSG00000044927.7	ENSMUST00000056403.7	1217	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	480	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCGTTGTCTTGTGGG	6909	False	NA	-1	True	AATAAA	-17	NA	87958619	87957401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87957400_87958600
ES_00048114	chr6	-	2031	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113598.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	727.359718433733	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGAACAGCTGCTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	88021999	87976098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88021918
ES_00048117	chr6	-	2688	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	0	-9	0	9	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATGACTTGGGTTTGTT	NA	False	NA	1	True	ATTAAA	-25	NA	88423521	88234306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ES_00048118	chr6	-	869	5	FSM	ENSMUSG00000033216.10	ENSMUST00000204459.3	821	5	-48	0	-11	0	multi-exon	FALSE	canonical	3	78	junction_1	175.170452702503	1904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGCTCTTTGTGGGGCT	NA	False	NA	NA	False	AAAAAG	-10	NA	88423532	88258633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ES_00048119	chr6	-	3181	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	-9	0	9	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGTTGTGAGTGTTGG	9095	False	NA	14	True	NA	NA	NA	88495887	88480551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ES_00048125	chr6	-	1546	8	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	2311	2	0	-2	3prime_fragment	FALSE	canonical	3	333	junction_3	29.2665442484229	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGAGCCTGTTGTTGGG	9275	False	NA	-6	True	AATAAA	-19	NA	88816571	88812897	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312
ES_00048126	chr6	-	4556	6	FSM	ENSMUSG00000030083.12	ENSMUST00000203272.3	4556	6	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_5	89.5231813554456	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGGATGAGCCTCCTCC	6880	False	NA	NA	False	NA	NA	NA	88818966	88813129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88813435_88813506_88815268_88815361_88815461_88815619_88815739_88815826_88817883_88818750
ES_00048130	chr6	-	3459	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	103	-191	0	191	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTCCCTTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	88875659	88860264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
ES_00048132	chr6	-	9037	32	FSM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	0	-3	0	3	multi-exon	FALSE	canonical	3	115	junction_30	20.9222334925891	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGGCTCTGAGTCTTAGT	8990	False	NA	1	True	AATAAA	-38	NA	89339602	89293292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424_89299595_89299712_89299904_89300217_89300315_89300555_89300660_89301235_89301396_89301521_89301669_89306365_89306433_89306539_89306797_89307317_89307461_89308196_89308432_89308822_89308967_89309067_89309308_89309662_89309757_89309987_89310156_89311257_89311395_89311632_89311754_89311835_89311988_89312109_89312304_89312378_89312476_89314132_89314334_89317504_89317620_89318830_89318931_89319310_89319465_89319566_89319691_89319932_89320034_89320950_89321092_89331837_89332021_89333439_89334701_89339388
ES_00048134	chr6	-	1042	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ES_00048135	chr6	-	1579	3	FSM	ENSMUSG00000056643.6	ENSMUST00000070890.6	1653	3	0	74	0	-74	multi-exon	FALSE	canonical	2	3	junction_1	0.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCAGCTTTTCCAGCT	NA	False	NA	NA	False	NA	NA	NA	90302167	90285404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90286790_90295240_90295324_90302056
ES_00048136	chr6	-	845	4	FSM	ENSMUSG00000048794.15	ENSMUST00000134224.8	849	4	0	4	0	-4	multi-exon	FALSE	canonical	2	4	junction_1	0.471404520791032	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTTGATCATATTCAC	NA	False	NA	NA	False	NA	NA	NA	90405779	90397919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90398048_90398190_90398383_90404419_90404526_90405360
ES_00048138	chr6	-	6436	14	NIC	ENSMUSG00000034312.16	novel	6490	14	NA	NA	20	0	intron_retention	FALSE	canonical	2	9	junction_13	9.75195322568645	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTGTCCCCAGCCGCC	NA	False	NA	-8	True	AATAAA	-17	NA	90693491	90636579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_90639938_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90693189
ES_00048141	chr6	-	431	1	FSM	ENSMUSG00000058700.3	ENSMUST00000080061.3	480	1	80	-31	80	31	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAGGGGAAAAAAAAAAAGGA	NA	False	NA	NA	False	AATAAA	-11	NA	90822362	90821931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90821900_90822400
ES_00048142	chr6	-	7054	41	NNC	ENSMUSG00000030091.18	novel	7037	40	NA	NA	0	44738	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.0066888868837	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAACAAAAAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	91093801	90945311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_90945338_90990048_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
ES_00048143	chr6	-	6895	40	FSM	ENSMUSG00000030091.18	ENSMUST00000113509.2	6893	40	0	-2	0	0	multi-exon	FALSE	non_canonical	2	13	junction_25	73.2448632562406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGCGGTGGTTCTTGGGG	NA	False	NA	-2	True	AATAAA	-20	NA	91093801	90990049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037586_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
ES_00048144	chr6	-	7037	40	FSM	ENSMUSG00000030091.18	ENSMUST00000032179.14	7037	40	0	0	0	0	multi-exon	FALSE	non_canonical	3	302	junction_34	44.9993644487226	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGCGGTGGTTCTTGGGG	NA	False	NA	-2	True	AATAAA	-20	NA	91093811	90990049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
ES_00048145	chr6	-	751	3	FSM	ENSMUSG00000030091.18	ENSMUST00000153350.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_1	15	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTCTACATCCACTCTC	NA	False	NA	NA	False	NA	NA	NA	91007240	91003561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_91003962_91005707_91005884_91007065
ES_00048148	chr6	-	1581	1	FSM	ENSMUSG00000034203.9	ENSMUST00000205802.2	1854	1	310	-37	310	37	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACAAGAGAAATGGG	NA	False	NA	NA	False	NA	NA	NA	91450121	91448540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_91448500_91450100
ES_00048149	chr6	-	3642	16	FSM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	0	-8	0	8	multi-exon	FALSE	canonical	3	81	junction_2	18.0017283120878	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAATTTATTTTTCAGGC	369	False	NA	8	True	AATAAA	-24	NA	91492870	91466278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
ES_00048151	chr6	-	5300	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	34	0	34	0	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTGTGCTTAAAACGT	NA	False	NA	1	True	ATTAAA	-24	NA	92191872	92163692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
ES_00048152	chr6	-	1387	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	0	-3	0	3	multi-exon	FALSE	canonical	3	80	junction_1	3.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTGCTCTTCTGTAT	NA	False	NA	-10	True	AATAAA	-18	NA	92221631	92219038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_92220107_92220652_92220869_92221528
ES_00048155	chr6	-	7902	23	NIC	ENSMUSG00000045095.17	novel	7929	25	NA	NA	2	170	combination_of_known_junctions	TRUE	canonical	3	14	junction_6	7.90386452187569	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGCCTCATGATTATCA	NA	False	NA	NA	False	NA	NA	NA	94260874	93652265	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671193_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93920184_93920302_94259990
ES_00048156	chr6	-	7209	24	FSM	ENSMUSG00000045095.17	ENSMUST00000089317.12	7209	24	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	10.0249216864979	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTGCTTCTGGATTGGT	NA	False	NA	NA	False	AATACA	-25	NA	94260303	93652435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671157_93674174_93674469_93676596_93676790_93678270_93678363_93681257_93681342_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93920184_93920302_94259990
ES_00048158	chr6	-	4961	19	FSM	ENSMUSG00000030029.15	ENSMUST00000101126.3	4951	19	0	-10	0	3	multi-exon	FALSE	canonical	3	92	junction_14	16.0804305574689	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGGCGGTCACTGCTCT	6760	False	NA	NA	False	AATAAA	-24	NA	94677118	94581506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_94582985_94583083_94583345_94584272_94584420_94585020_94585147_94585689_94586110_94586597_94586880_94588352_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349_94603494_94604940_94605085_94607082_94607221_94631827_94631903_94640907_94640980_94676442
ES_00048161	chr6	-	3383	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	-16	0	16	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGTGTGTGTACACGCA	NA	False	NA	9	True	ATTAAA	-33	NA	95695781	95449973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
ES_00048166	chr6	-	5796	17	FSM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	0	-64	0	64	multi-exon	FALSE	canonical	3	74	junction_1	13.1808336231059	1285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGAAAATTATCTACCCA	7468	False	NA	NA	False	NA	NA	NA	97156083	97129893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155842
ES_00048167	chr6	-	2465	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
ES_00048168	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182608	97160967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ES_00048170	chr6	-	1292	2	FSM	ENSMUSG00000030061.17	ENSMUST00000203215.2	1293	2	0	1	0	-1	multi-exon	FALSE	canonical	3	461	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATACTGGGATC	NA	False	NA	NA	False	TTTAAA	-2	NA	97182529	97181052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97182309_97182493
ES_00048172	chr6	-	4497	20	NIC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_19	20.0048470580801	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	7413	False	NA	-1	True	AATAAA	-19	NA	97373698	97263827	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373386
ES_00048176	chr6	-	1848	15	FSM	ENSMUSG00000030067.18	ENSMUST00000177229.8	1848	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	4.40315285926355	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTGGGCGGGCCGACCC	NA	False	NA	NA	False	AGTAAA	-17	NA	99005220	98907050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_98907196_98912234_98912402_98916679_98916750_98918496_98918619_98921579_98921682_98922307_98922388_98922494_98922697_98931281_98931366_98942987_98943076_98955093_98955199_98980160_98980366_98986864_98987019_98992384_98992475_98993488_98993627_99005124
ES_00048177	chr6	-	392	3	FSM	ENSMUSG00000030067.18	ENSMUST00000175838.2	420	3	28	0	28	0	multi-exon	FALSE	canonical	0	0	junction_1	2	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCTGCTAGCCTAAAGG	5140	False	NA	NA	False	NA	NA	NA	99499654	99412196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_99412307_99497557_99497694_99499508
ES_00048179	chr6	-	519	1	FSM	ENSMUSG00000084319.4	ENSMUST00000121046.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGGATCTATCACCTG	NA	False	NA	NA	False	NA	NA	NA	99855295	99854776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_99854800_99855300
ES_00048180	chr6	-	4503	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAGATGATTATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	100264446	100205525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
ES_00048181	chr6	-	921	1	FSM	ENSMUSG00000107690.2	ENSMUST00000205178.2	1089	1	85	83	85	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	3523	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCAATTACTGTGTACAA	NA	False	NA	NA	False	NA	NA	NA	100250574	100249653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100249700_100250600
ES_00048183	chr6	-	1932	11	NNC	ENSMUSG00000035378.18	novel	1990	11	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	80.3295711428861	260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAAGGTGTAAATAATTA	NA	False	NA	-4	True	AATAAA	-16	NA	100648089	100550044	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613955_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ES_00048185	chr6	-	2072	11	FSM	ENSMUSG00000005362.15	ENSMUST00000013882.10	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	56.1066840937869	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777026	106757161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772956_106776951
ES_00048188	chr6	-	2595	9	FSM	ENSMUSG00000030101.16	ENSMUST00000032191.16	2593	9	6	-8	6	8	multi-exon	FALSE	canonical	3	77	junction_4	15.6204993518133	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTTTTCATTCTTTACT	2478	False	NA	NA	False	AATAAA	-23	NA	108162537	108083980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_108085548_108095580_108095641_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
ES_00048190	chr6	-	1764	8	NNC	ENSMUSG00000030101.16	novel	452	2	NA	NA	-7	1934	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	32.630898090676	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTGGTCTTTGCTGA	2491	False	NA	NA	False	AATAAA	-29	NA	108162524	108119339	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_108120149_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
ES_00048191	chr6	-	1984	1	FSM	ENSMUSG00000043024.7	ENSMUST00000062429.7	1984	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAATCTGCCTTCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	108542549	108540565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_108540600_108542500
ES_00048193	chr6	-	710	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9134	111	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.0656759649376	164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACAGAAGTCTTGTGTC	NA	False	NA	-8	True	AATAAA	-13	NA	108600090	108587182	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108600033
ES_00048194	chr6	-	544	4	FSM	ENSMUSG00000087341.5	ENSMUST00000204759.2	544	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.43650214343336	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCACCTCACCATCTGTCG	NA	False	NA	NA	False	NA	NA	NA	108590956	108587293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909
ES_00048196	chr6	-	6766	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	16	-4205	0	4205	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGACTTGCCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	112673631	112592605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ES_00048197	chr6	-	2575	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	4	-19	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTATTTCCCAGTTTT	NA	False	NA	-3	True	CATAAA	-21	NA	112673601	112596829	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ES_00048198	chr6	-	2577	14	FSM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	88.4665550417034	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAATGTGTAATGTC	NA	False	NA	-109	True	CATAAA	-16	NA	112673631	112596935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ES_00048199	chr6	-	3586	12	NIC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	-4	True	AATAAA	-20	NA	112673601	112603375	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ES_00048201	chr6	-	1096	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	102	-376	-21	0	multi-exon	FALSE	canonical	3	30	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054192	113047358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113048397_113054134
ES_00048202	chr6	-	4652	4	FSM	ENSMUSG00000042873.12	ENSMUST00000162280.2	4762	4	99	11	99	-11	multi-exon	FALSE	canonical	1	2	junction_1	1.88561808316413	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTATATCACCCATGCT	NA	False	NA	NA	False	AATAAA	-5	NA	113172246	113145061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113148920_113153406_113153644_113170778_113171265_113172175
ES_00048203	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	5793	False	NA	NA	False	AATAAA	-20	NA	113320945	113311084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
ES_00048205	chr6	-	2998	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	-62	-88	-62	88	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTCACCCGGAACAGTTA	NA	False	NA	NA	False	NA	NA	NA	113354906	113342897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ES_00048206	chr6	-	2832	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	49	-21	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTATAAAAAAACCATCCG	NA	False	NA	NA	False	TTTAAA	-8	NA	113354795	113343006	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ES_00048207	chr6	-	1235	9	FSM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	0	-11	0	1	multi-exon	FALSE	canonical	3	27	junction_2	50.3374549912885	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTACCAAGGACTGTGC	NA	False	NA	-7	True	AATAAA	-43	NA	113396280	113392278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ES_00048217	chr6	-	1349	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	4	0	4	0	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	-7	True	NA	-10	True	AATAAA	-23	NA	113717700	113705022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ES_00048218	chr6	-	7034	23	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	7.70799734953872	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGGTTATGTTTTCCA	NA	False	NA	1	True	AATAAA	-31	NA	113868331	113722628	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ES_00048220	chr6	-	1168	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014837	114981341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ES_00048224	chr6	-	1351	2	FSM	ENSMUSG00000030316.14	ENSMUST00000144445.2	531	2	1	-821	0	821	multi-exon	FALSE	canonical	3	27	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAAATGTTTCCTTATT	NA	False	NA	7	True	ATTAAA	-27	NA	115009225	115007417	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115008724_115009180
ES_00048230	chr6	-	1370	12	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-979	7	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	21.523003262126	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTCCTTTAGATTTCT	NA	False	NA	NA	False	AATAAA	-37	NA	115737211	115706084	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115736555_115736685_115737065
ES_00048231	chr6	-	518	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	-1	0	1	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	2636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTATGTTTTTGGTAACT	NA	False	NA	-23	True	AATAAA	-23	NA	115785708	115782464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
ES_00048232	chr6	-	906	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	0	0	0	0	multi-exon	FALSE	canonical	3	17944	junction_1	6	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785309	115782472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115782650_115783946_115784129_115784762
ES_00048233	chr6	-	3627	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	0	-13	0	13	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTCTTGACCACTTGC	7881	False	NA	NA	False	AATAAA	-34	NA	115830332	115817644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
ES_00048234	chr6	-	3956	8	NIC	ENSMUSG00000030322.13	novel	3614	8	NA	NA	86	0	intron_retention	FALSE	canonical	0	0	junction_7	48.1239895202688	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	8050	False	NA	NA	False	AATAAA	-21	NA	115830163	115817657	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825355_115826694_115827578_115827801_115830097
ES_00048235	chr6	-	436	5	FSM	ENSMUSG00000030123.16	ENSMUST00000203628.2	442	5	6	0	6	0	multi-exon	FALSE	canonical	3	4	junction_1	1.29903810567666	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACCCTGACACCCTGCATA	NA	False	NA	NA	False	NA	NA	NA	115936982	115935523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115935652_115935949_115936055_115936270_115936306_115936737_115936802_115936878
ES_00048236	chr6	-	5854	6	FSM	ENSMUSG00000030126.18	ENSMUST00000088896.10	5838	6	-27	11	-27	-11	multi-exon	FALSE	canonical	2	10	junction_4	4.84148737476408	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCAATTGACTCAGCTTT	NA	False	NA	-10	True	AATAAA	-17	NA	116170474	115995582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115999363_116001762_116001899_116019831_116020767_116110727_116111419_116115155_116115212_116170218
ES_00048237	chr6	-	1685	1	FSM	ENSMUSG00000030126.18	ENSMUST00000204574.2	2697	1	-208	1220	-208	-1220	mono-exon	FALSE	NA	NA	NA	NA	NA	2369	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTTAAAAATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	116151482	116149797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116149800_116151500
ES_00048238	chr6	-	464	1	FSM	ENSMUSG00000082474.4	ENSMUST00000118191.2	441	1	19	-42	19	42	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGAATTGTTTTG	8719	False	NA	NA	False	ATTAAA	-19	NA	116172800	116172336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116172300_116172800
ES_00048239	chr6	-	516	2	Genic_Genomic	ENSMUSG00000108030.2_ENSMUSG00000082474.4	novel	441	1	NA	NA	-24	0	multi-exon	FALSE	canonical	1	1	junction_1	0	119	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	8485	False	NA	NA	False	NA	NA	NA	116184978	116172378	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_116172856_116184939
ES_00048241	chr6	-	2357	2	FSM	ENSMUSG00000059878.13	ENSMUST00000057540.6	2375	2	3	15	3	3	multi-exon	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTATCTATTTTACTTCT	NA	False	NA	-2	True	AATAAA	-21	NA	116605880	116601879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116604095_116605738
ES_00048243	chr6	-	6360	11	FSM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	100	0	-43	0	multi-exon	FALSE	canonical	3	10	junction_1	5.29528091794949	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCGTGTGTTACTGTTT	8706	False	NA	0	True	AATAAA	-18	NA	116650813	116609968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116615260_116616401_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
ES_00048244	chr6	-	1234	10	FSM	ENSMUSG00000042129.9	ENSMUST00000203029.3	1243	10	11	-2	0	2	multi-exon	FALSE	canonical	3	13	junction_1	4.44722135470878	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCCTCTTCTCTGAGG	8760	False	NA	NA	False	ATTAAA	-17	NA	116650759	116616182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
ES_00048250	chr6	-	3674	6	FSM	ENSMUSG00000030145.15	ENSMUST00000069292.14	3683	6	0	9	0	-9	multi-exon	FALSE	canonical	3	13	junction_5	4.48998886412873	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGGAATTTCATTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	118432489	118404288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_118407356_118409817_118409908_118410265_118410393_118430806_118430849_118431637_118431873_118432376
ES_00048251	chr6	-	3782	6	FSM	ENSMUSG00000072623.7	ENSMUST00000161170.2	3968	6	14	172	14	-172	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGTGGGAAAAGCCTAG	NA	False	NA	NA	False	NA	NA	NA	118456267	118439082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_118442362_118442795_118442860_118443788_118443882_118444199_118444327_118454267_118454386_118456166
ES_00048252	chr6	-	7423	34	NNC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_21	14.0305321010163	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAATCCTATATTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	118539232	118478268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118517270_118517396_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ES_00048253	chr6	-	6977	34	FSM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	-47	0	-47	0	multi-exon	FALSE	canonical	3	23	junction_21	12.4668891127898	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAATCCTATATTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	118539234	118478268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ES_00048254	chr6	-	7005	34	NNC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-47	13	at_least_one_novel_splicesite	TRUE	canonical	3	18	junction_21	12.9133582362079	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTATACCATTTCCACCA	NA	False	NA	NA	False	AATAAA	-34	NA	118539234	118478255	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517396_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ES_00048256	chr6	-	3489	8	FSM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_7	15.2168005969771	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCAGCAGCCAGACGC	NA	False	NA	NA	False	NA	NA	NA	119365647	119330725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119365442
ES_00048260	chr6	-	10096	27	NIC	ENSMUSG00000045962.17	novel	10575	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_18	4.75494137246941	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	7175	False	NA	-1	True	AATAAA	-21	NA	120015616	119900929	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119929645_119929931_119933031_119933158_119937604_119937686_119945436_119945625_119946197_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
ES_00048261	chr6	-	9763	26	FSM	ENSMUSG00000045962.17	ENSMUST00000203030.3	8163	26	-948	-652	0	0	multi-exon	FALSE	canonical	0	0	junction_16	5.25752793620728	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	7223	False	NA	-1	True	AATAAA	-21	NA	120015568	119900929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119933031_119933158_119937604_119937686_119945436_119945625_119946197_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
ES_00048265	chr6	-	229	2	Intergenic	novelGene_3520	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATCTTACTGTAGGCT	NA	False	NA	NA	False	NA	NA	NA	120263672	120245364	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_120245560_120263638
ES_00048267	chr6	-	2474	10	NIC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	-11	9	combination_of_known_junctions	FALSE	canonical	1	4	junction_5	96.8692640675444	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACAAAGTCTCGTGCTTG	NA	False	NA	-5	True	AATAAA	-27	NA	120334401	120301274	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
ES_00048268	chr6	-	2833	12	NNC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	8	5	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_11	78.8812267518977	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTCTACAAAGTCTCGTG	NA	False	NA	-9	True	AATAAA	-23	NA	120334320	120301278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120333945
ES_00048274	chr6	-	224	1	Intergenic	novelGene_3530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATTGCCTCTTCCGTCTG	NA	False	NA	NA	False	AATAAA	-17	NA	120624730	120624506	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_120624500_120624700
ES_00048276	chr6	-	1312	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799754	120772204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ES_00048278	chr6	-	528	1	FSM	ENSMUSG00000107971.2	ENSMUST00000204946.2	2094	1	2060	-494	2060	494	mono-exon	FALSE	NA	NA	NA	NA	NA	502	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAGCCTTCCAAGGACAAG	NA	False	NA	NA	False	NA	NA	NA	120889894	120889366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_120889400_120889900
ES_00048282	chr6	-	4854	5	FSM	ENSMUSG00000051586.18	ENSMUST00000204302.3	4854	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	14.456832294801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGTTTCTGAGTTTTTC	3906	False	NA	NA	False	AATAAA	-13	NA	120999210	120974276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186
ES_00048283	chr6	-	2785	18	NIC	ENSMUSG00000051586.18	novel	2875	18	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	13.1507101127881	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTGATTGTCAAAGAT	NA	False	NA	9	True	AATAAA	-33	NA	121087054	120984186	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_120984391_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
ES_00048286	chr6	-	3704	13	FSM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	0	-21	0	21	multi-exon	FALSE	canonical	3	372	junction_9	201.860702108052	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTCCTTAGCACAAACGA	9596	False	NA	9	True	AGTAAA	-42	NA	122313974	122294668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816
ES_00048287	chr6	-	3905	15	FSM	ENSMUSG00000040669.15	ENSMUST00000161739.8	3893	15	0	-12	0	5	multi-exon	FALSE	canonical	3	590	junction_10	176.752392241987	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGCATTCTGCTGTGTC	9076	False	NA	-7	True	AGTAAA	-26	NA	122316617	122294684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
ES_00048288	chr6	-	3612	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161054.8	3612	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	201.373802377627	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTTCACAAAACAGGAG	9089	False	NA	-131	True	NA	NA	NA	122316604	122294808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
ES_00048290	chr6	-	2132	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	0	-5	0	3	multi-exon	FALSE	canonical	3	36	junction_1	6.10453160549186	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTGTTTGTGGTGT	8724	False	NA	NA	False	AGTAAA	-17	NA	122579330	122554754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
ES_00048291	chr6	-	2265	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112586.8	2265	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	14.3099793921613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTTTGTGGTGTTTTT	8651	False	NA	NA	False	AGTAAA	-21	NA	122579403	122554750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016_122577085_122579215
ES_00048297	chr6	-	3963	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	0	-4	0	4	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTCCCCCTCTTGTTCT	9816	False	NA	0	True	AATAAA	-33	NA	122719704	122704763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ES_00048298	chr6	-	6253	9	FSM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	0	0	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	741.479591340854	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8913	False	NA	-21	True	AATAAA	-12	NA	122719481	122704784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122716953_122717346_122717440_122719334
ES_00048299	chr6	-	1321	9	FSM	ENSMUSG00000003153.11	ENSMUST00000166135.8	1321	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	3124.24898975738	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGGAGCACCTCCTTCAC	9045	False	NA	NA	False	NA	NA	NA	122719349	122706889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122717346_122717440_122719334
ES_00048301	chr6	-	601	5	FSM	ENSMUSG00000003153.11	ENSMUST00000165884.8	601	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	4656.41113815135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGTTGTTGGGATTCTGGT	1369	False	NA	NA	False	ACTAAA	-11	NA	122778599	122714043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122714258_122716791_122716953_122717346_122717440_122774760_122774839_122778544
ES_00048304	chr6	-	3077	15	FSM	ENSMUSG00000005069.13	ENSMUST00000112531.8	3075	15	0	-2	0	1	multi-exon	FALSE	canonical	2	3	junction_14	32.7566787083184	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCCGCTGCTGACGTTGG	NA	False	NA	1	True	AATAAA	-18	NA	124391822	124373773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391725
ES_00048306	chr6	-	3262	16	FSM	ENSMUSG00000005069.13	ENSMUST00000035861.6	3139	16	-106	-17	-76	1	multi-exon	FALSE	canonical	3	29	junction_9	30.6939009504422	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCCGCTGCTGACGTTGG	NA	False	NA	1	True	AATAAA	-18	NA	124392102	124373773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
ES_00048308	chr6	-	2417	8	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	12559	1	-13	-1	3prime_fragment	FALSE	canonical	3	22	junction_7	10.5211157940126	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTTGCTTGCTGTTTAC	9240	False	NA	NA	False	AATAAA	-14	NA	124427144	124407718	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732
ES_00048311	chr6	-	1044	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	0	-10	0	10	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGATTGTTTTGAGGG	NA	False	NA	-4	True	TATAAA	-29	NA	124689141	124681333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ES_00048312	chr6	-	481	3	FSM	ENSMUSG00000004268.12	ENSMUST00000125795.2	481	3	0	0	0	0	multi-exon	FALSE	canonical	2	124	junction_1	598	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124682622	124681344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124681622_124682120_124682180_124682477
ES_00048313	chr6	-	917	5	FSM	ENSMUSG00000004268.12	ENSMUST00000142187.8	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_4	110.261904119238	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGACTGCAGAGTGGGG	NA	False	NA	-91	True	NA	NA	NA	124689032	124681420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124681622_124681901_124682180_124682477_124682620_124682703_124682806_124688838
ES_00048316	chr6	-	2246	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	-18	-2	-18	2	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGCCCCTTGTATCCA	8902	False	NA	2	True	AATAAA	-30	NA	124715695	124697667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
ES_00048317	chr6	-	1659	2	FSM	ENSMUSG00000072772.4	ENSMUST00000140423.2	1656	2	0	-3	0	0	multi-exon	FALSE	canonical	3	950	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCAGTCATTTGT	9252	False	NA	NA	False	AATAAA	-17	NA	124718028	124716145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124717659_124717882
ES_00048318	chr6	-	773	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	93	-3	93	3	multi-exon	FALSE	canonical	3	807	junction_1	71.5	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCAGTCATTTGTAGT	9036	False	NA	NA	False	AATAAA	-20	NA	124718244	124716142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124716377_124717481_124717659_124717882
ES_00048320	chr6	-	4694	10	NNC	ENSMUSG00000004263.16	novel	4433	10	NA	NA	-264	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	27.442869950337	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTGTGACGTGTTTTT	8951	False	NA	0	True	AAAACA	-21	NA	124733751	124719506	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982_124724950_124726198_124726313_124726424_124726563_124726709_124726885_124733258
ES_00048321	chr6	-	4911	10	FSM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	-478	0	-478	0	multi-exon	FALSE	canonical	3	30	junction_9	22.6083126851416	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTGTGACGTGTTTTT	8737	False	NA	0	True	AAAACA	-21	NA	124733965	124719506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982_124724953_124726198_124726313_124726424_124726563_124726709_124726885_124733258
ES_00048323	chr6	-	2705	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	90	0	-33	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGCTGAACTAAGGAT	9956	False	NA	-3	True	NA	NA	NA	124746546	124737017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ES_00048324	chr6	-	2228	12	NNC	ENSMUSG00000004267.17	novel	2795	12	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	34	junction_1	8.49696105130758	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	8715	False	NA	-6	True	ATTAAA	-17	NA	124745300	124737327	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_124737707_124737726_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
ES_00048327	chr6	-	281	2	Intergenic	novelGene_3538	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGGTTTTCTTGCTCA	6841	False	NA	NA	False	NA	NA	NA	124762718	124759109	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_124759144_124762471
ES_00048328	chr6	-	1607	7	FSM	ENSMUSG00000023456.17	ENSMUST00000172132.10	1607	7	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGTCCCAGGCTGCC	NA	False	NA	-17	True	AATACA	-22	NA	124791259	124787548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ES_00048330	chr6	-	3076	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7905	False	NA	-27	True	AATACA	-9	NA	124806398	124792000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ES_00048332	chr6	-	924	8	FSM	ENSMUSG00000038429.11	ENSMUST00000142058.8	924	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	283.81669853507	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTACACGGGCATCC	7932	False	NA	NA	False	NA	NA	NA	124806371	124799581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ES_00048334	chr6	-	426	3	FSM	ENSMUSG00000030124.3	ENSMUST00000139571.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.5	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCCCTGTCATTTGCCC	1190	False	NA	NA	False	NA	NA	NA	124887014	124885561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124885616_124886188_124886453_124886906
ES_00048336	chr6	-	979	4	FSM	ENSMUSG00000030122.13	ENSMUST00000181150.2	629	4	-350	0	-45	0	multi-exon	FALSE	canonical	3	521	junction_3	94.9139961579253	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCCTCTCATTTCCATC	NA	False	NA	NA	False	NA	NA	NA	124892537	124891011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880
ES_00048337	chr6	-	1672	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	-344	0	344	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTGGTTATAGACAAAT	NA	False	NA	NA	False	NA	NA	NA	124942501	124935031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ES_00048339	chr6	-	1707	6	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	13	0	intron_retention	FALSE	canonical	3	57	junction_5	694.444065422119	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942462	124935778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124942364
ES_00048340	chr6	-	1764	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ES_00048345	chr6	-	486	2	FSM	ENSMUSG00000030127.16	ENSMUST00000149346.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	3	1332	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGGGTCTGTAAACTTA	NA	False	NA	NA	False	AATAAA	-33	NA	124942475	124941516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124941892_124942364
ES_00048346	chr6	-	3289	1	FSM	ENSMUSG00000057666.19	ENSMUST00000192506.2	3289	1	-93	93	-93	45	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGAGGTGAAGCAGGCTC	NA	False	NA	30	True	NA	NA	NA	125142059	125138770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_125138800_125142100
ES_00048347	chr6	-	1355	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142554	125138815	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
ES_00048355	chr6	-	4641	32	FSM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	0	-12	0	12	multi-exon	TRUE	canonical	3	436	junction_21	78.9640126675822	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGTCTGTCCCATCCTT	3395	False	NA	3	True	AATAAA	-32	NA	125168664	125144957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
ES_00048360	chr6	-	2359	7	FSM	ENSMUSG00000038213.8	ENSMUST00000043422.8	2352	7	0	-7	0	7	multi-exon	FALSE	canonical	1	1	junction_3	4.61880215351701	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTCTCTCTCTCCCTGT	8513	False	NA	NA	False	AATAAA	-24	NA	125208823	125200888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_125201673_125201826_125201914_125203453_125203760_125205025_125205365_125207107_125207381_125207517_125207761_125208496
ES_00048361	chr6	-	1515	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	0	-6	0	6	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTCTAGTGTGTTGTA	3461	False	NA	-2	True	AATAAA	-34	NA	125263005	125255230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
ES_00048364	chr6	-	1261	9	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	0	25969	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1930.50511120147	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGGTAAAATTATACAAT	9966	False	NA	NA	False	NA	NA	NA	125471754	125411259	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_125411293_125437228_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ES_00048366	chr6	-	1311	11	FSM	ENSMUSG00000000399.11	ENSMUST00000205002.3	1445	11	0	134	0	-134	multi-exon	FALSE	canonical	3	1115	junction_7	83.3223259396904	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTTCTCTGAAATGTTA	NA	False	NA	93	True	ATTAAA	-27	NA	126826088	126798817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
ES_00048367	chr6	-	1089	5	ISM	ENSMUSG00000030345.17	ENSMUST00000078521.7	2252	15	36414	9	-41	-9	3prime_fragment	FALSE	canonical	2	4	junction_4	3.57071421427143	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTGTTCGTGGCTGT	NA	False	NA	-21	True	AATAAA	-8	NA	126862388	126852991	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_126853514_126854122_126854302_126857187_126857318_126860989_126861051_126862191
ES_00048368	chr6	-	1875	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	-4	0	4	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTCGCCTAGTTCTCA	5265	False	NA	-1	True	AATAAA	-25	NA	126916550	126900373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ES_00048369	chr6	-	2245	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	0	-12	0	12	multi-exon	FALSE	canonical	3	81	junction_4	57.8721651573535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTTTTATTATGATTC	5265	False	NA	NA	False	TATAAA	-23	NA	126916550	126900000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ES_00048373	chr6	-	3651	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGTCTGTTCAGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	127086513	127062078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ES_00048374	chr6	-	327	1	FSM	ENSMUSG00000106755.2	ENSMUST00000202145.2	310	1	40	-57	40	57	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAACTGCTCCCACCGGT	NA	False	NA	NA	False	NA	NA	NA	127160641	127160314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_127160300_127160600
ES_00048375	chr6	-	309	1	FSM	ENSMUSG00000081113.2	ENSMUST00000121087.2	447	1	107	31	107	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGAGTTTGTACAAATAA	NA	False	NA	NA	False	NA	NA	NA	127259365	127259056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_127259100_127259400
ES_00048376	chr6	-	2716	10	FSM	ENSMUSG00000030350.9	ENSMUST00000032500.9	2724	10	8	0	8	0	multi-exon	FALSE	canonical	1	4	junction_7	3.18948890986829	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGAGTACCTCTTTCTT	NA	False	NA	2	True	AATAAA	-17	NA	127746427	127665973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_127666872_127667572_127667695_127674647_127674799_127680839_127680956_127688104_127688193_127688744_127688888_127703487_127703552_127706372_127706529_127709597_127709784_127745635
ES_00048377	chr6	-	3927	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	0	-2522	0	11	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTGGTGTGTTTTCTCC	6166	False	NA	9	True	AATAAA	-37	NA	128120523	127938347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
ES_00048379	chr6	-	363	1	Genic_Genomic	ENSMUSG00000097979.3	novel	NA	NA	NA	NA	895	174	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCACCCCCCAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-6	NA	128179301	128178938	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_128178900_128179300
ES_00048382	chr6	-	1909	11	FSM	ENSMUSG00000030353.16	ENSMUST00000112157.4	1909	11	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_7	24.4991836598692	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGAGCTAGTTTGGC	1357	False	NA	-5	True	AATAAA	-19	NA	128277776	128205143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
ES_00048385	chr6	-	3395	11	FSM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	0	-21	0	21	multi-exon	FALSE	canonical	3	32	junction_5	4.7169905660283	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGGGTTTCTCCTGTT	7491	False	NA	1	True	AATAAA	-39	NA	128332814	128298102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
ES_00048388	chr6	-	1053	2	FSM	ENSMUSG00000001521.13	ENSMUST00000157005.3	1053	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGTTGTTTAATAAG	7517	False	NA	NA	False	CATAAA	-19	NA	128332788	128319203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128320169_128332700
ES_00048390	chr6	-	1113	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	-5	0	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	474	False	NA	-7	True	AATAAA	-41	NA	128339831	128334322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128335157_128336068_128336318_128339801
ES_00048391	chr6	-	1584	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	149.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	474	False	NA	-7	True	AATAAA	-41	NA	128339831	128334322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128335157_128336068_128336318_128339330
ES_00048392	chr6	-	1283	4	NIC	ENSMUSG00000048668.17	novel	2015	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	431	False	NA	-7	True	AATAAA	-41	NA	128339874	128334322	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
ES_00048393	chr6	-	3697	2	FSM	ENSMUSG00000048668.17	ENSMUST00000155573.3	3697	2	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCCCCAGAGCTGTGGA	763	False	NA	NA	False	NA	NA	NA	128339542	128334933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128335157_128336068
ES_00048394	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401894	128386406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ES_00048395	chr6	-	3191	10	FSM	ENSMUSG00000001518.13	ENSMUST00000142615.4	3191	10	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	20.4601389035025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAGGCTCCATAGCAAG	NA	False	NA	-89	True	NA	NA	NA	128401881	128386495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ES_00048397	chr6	-	2217	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	1139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
ES_00048398	chr6	-	646	7	NIC	ENSMUSG00000030359.15	novel	4681	36	NA	NA	6	-6	combination_of_known_junctions	FALSE	canonical	1	3	junction_6	23.8799078725191	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTGGGTTTTTTTTTC	NA	False	NA	-1	True	AATAAA	-14	NA	128464812	128460535	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464756
ES_00048401	chr6	-	3888	1	FSM	ENSMUSG00000107633.2	ENSMUST00000204652.2	2646	1	-746	-496	-746	496	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAATCAGTTATTTTCTG	NA	False	NA	NA	False	NA	NA	NA	128842903	128839015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128839000_128842900
ES_00048404	chr6	-	1633	1	FSM	ENSMUSG00000058873.2	ENSMUST00000075251.2	522	1	-88	-1023	-88	1023	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAAATGTTTTATACGC	NA	False	NA	NA	False	AAAAAG	-31	NA	131231100	131229467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_131229500_131231100
ES_00048406	chr6	-	1853	10	FSM	ENSMUSG00000030189.16	ENSMUST00000032309.13	1853	10	0	0	0	0	multi-exon	FALSE	canonical	3	2076	junction_5	391.631661162235	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	4971	False	NA	-9	True	AATAAA	-21	NA	131365401	131341817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
ES_00048407	chr6	-	1684	9	FSM	ENSMUSG00000030189.16	ENSMUST00000087865.4	1684	9	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_4	774.912807595151	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	4933	False	NA	-9	True	AATAAA	-21	NA	131365439	131341817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
ES_00048412	chr6	-	665	3	FSM	ENSMUSG00000030201.16	ENSMUST00000203773.2	727	3	62	0	62	0	multi-exon	FALSE	canonical	3	81	junction_1	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTTTAACAAACTCTGT	NA	False	NA	NA	False	NA	NA	NA	134444662	134439360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_134439625_134441357_134441568_134444471
ES_00048413	chr6	-	1535	2	ISM	ENSMUSG00000030201.16	ENSMUST00000032322.15	9368	23	0	94306	0	-8	5prime_fragment	FALSE	canonical	3	105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAAACAGTGTAAATAG	NA	False	NA	NA	False	AATAAA	-19	NA	134543876	134517744	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_134519009_134543605
ES_00048414	chr6	-	2300	4	FSM	ENSMUSG00000032718.5	ENSMUST00000047443.5	2376	4	78	-2	78	2	multi-exon	TRUE	canonical	3	7	junction_1	3.09120616516523	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGGATAGCTTTCAATT	NA	False	NA	NA	False	AATAAA	-23	NA	134609373	134586167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_134587815_134594279_134594421_134598695_134599013_134609178
ES_00048416	chr6	-	1631	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	0	-21	0	6	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGATTTTGTTCTGGT	NA	False	NA	3	True	ACTAAA	-40	NA	134874821	134846049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
ES_00048420	chr6	-	1624	2	ISM	ENSMUSG00000032641.19	ENSMUST00000111932.8	1711	5	9897	-5	-134	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134864929	134846119	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_134847407_134864592
ES_00048421	chr6	-	1661	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	-5	3	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTGGATTTTGTTCT	NA	False	NA	0	True	ACTAAA	-37	NA	134874893	134846052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
ES_00048422	chr6	-	2107	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	-453	-1156	-389	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134865184	134846055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
ES_00048423	chr6	-	618	2	FSM	ENSMUSG00000032641.19	ENSMUST00000152140.3	610	2	0	-8	0	8	multi-exon	FALSE	canonical	3	74	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTATTTTTATATCTGCTT	NA	False	NA	NA	False	NA	NA	NA	134874888	134873652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_134874177_134874794
ES_00048428	chr6	-	2058	9	FSM	ENSMUSG00000030214.8	ENSMUST00000137139.2	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_8	3.42782730020052	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAAAAAACAAGAAC	NA	False	NA	NA	False	NA	NA	NA	136638871	136590300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
ES_00048430	chr6	-	406	1	FSM	ENSMUSG00000096010.3	ENSMUST00000179285.3	2863	1	13	2444	13	-2444	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGCATCAGAAAGGAGC	420	False	NA	NA	False	NA	NA	NA	136781400	136780994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_136781000_136781400
ES_00048431	chr6	-	2637	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	247	junction_11	431.640078103034	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2932	False	NA	-1	True	AATAAA	-19	NA	136805131	136790651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805019
ES_00048433	chr6	-	2640	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	500.56957640916	311	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2930	False	NA	-1	True	AATAAA	-19	NA	136805133	136790651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803107_136805017
ES_00048434	chr6	-	2745	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	0	-6	0	6	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGTGTAATGTGTAAA	2832	False	NA	5	True	AATAAA	-25	NA	136805231	136790645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
ES_00048435	chr6	-	2339	7	FSM	ENSMUSG00000030216.13	ENSMUST00000151333.2	2339	7	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_6	245.572573568159	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGCACTGTATTTGTA	2922	False	NA	NA	False	NA	NA	NA	136805141	136796725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
ES_00048438	chr6	-	8719	22	FSM	ENSMUSG00000015766.15	ENSMUST00000058210.13	4567	22	56	-4208	0	4208	multi-exon	FALSE	canonical	3	114	junction_13	15.9268452335348	5586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTCATGGTATTTTATT	4054	False	NA	NA	False	NA	NA	NA	137626227	137450034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137568415_137568491_137626049
ES_00048439	chr6	-	3560	21	FSM	ENSMUSG00000015766.15	ENSMUST00000111878.8	3560	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	34.6389953664941	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGCTTATTGTGTAAAA	3998	False	NA	-83	True	NA	NA	NA	137626283	137455174	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137626049
ES_00048440	chr6	-	533	5	FSM	ENSMUSG00000015766.15	ENSMUST00000153933.8	533	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	57.8289503622537	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCCTGATTGACTTAGA	4054	False	NA	NA	False	NA	NA	NA	137626227	137504392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_137504528_137505522_137505591_137514615_137514693_137568415_137568491_137626049
ES_00048441	chr6	-	1183	1	FSM	ENSMUSG00000046717.6	ENSMUST00000054786.6	1456	1	111	162	111	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCACCCTAGTTAATGTC	NA	False	NA	NA	False	AATAAA	-20	NA	138635431	138634248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_138634200_138635400
ES_00048445	chr6	-	2112	16	FSM	ENSMUSG00000030243.17	ENSMUST00000032370.13	2112	16	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	39.7130820875047	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTCTAAAGTTACATTT	6231	False	NA	NA	False	TTTAAA	-16	NA	142332762	142296067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_142296272_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
ES_00048447	chr6	-	3385	15	FSM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	0	4	0	-4	multi-exon	FALSE	canonical	3	113	junction_14	18.9118524546197	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAAAGAGGAGACCTAT	6180	False	NA	NA	False	AATAAA	-22	NA	142332813	142307105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
ES_00048450	chr6	-	783	5	FSM	ENSMUSG00000030246.13	ENSMUST00000204433.3	783	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	345.10098159814	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATATGAGCTCACAGATCA	NA	False	NA	-91	True	NA	NA	NA	142447113	142436061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065
ES_00048451	chr6	-	428	1	FSM	ENSMUSG00000107443.2	ENSMUST00000203900.2	652	1	70	154	70	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAAACCTGATGCAGCA	NA	False	NA	NA	False	NA	NA	NA	142916969	142916541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_142916500_142917000
ES_00048452	chr6	-	4411	27	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	101	junction_4	21.2642225290113	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCCTCTTTTGTGTG	NA	False	NA	NA	False	AATAAA	-26	NA	143045797	142956643	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
ES_00048456	chr6	-	4584	22	FSM	ENSMUSG00000030279.16	ENSMUST00000203349.3	4584	22	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	17.6396276203619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGTTTTCCAGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	143045833	142973038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
ES_00048459	chr6	-	2556	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8485	False	NA	-24	True	AATAAA	-16	NA	145021910	144944883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
ES_00048463	chr6	-	1194	6	FSM	ENSMUSG00000030265.15	ENSMUST00000111710.8	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	471.744252747185	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTCATCCAATGGAGTC	NA	False	NA	NA	False	AATGAA	-30	NA	145195903	145165970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_145166451_145170799_145170924_145177820_145177981_145179973_145180153_145192420_145192543_145195774
ES_00048466	chr6	-	6095	5	FSM	ENSMUSG00000030256.12	ENSMUST00000032386.11	6133	5	38	0	38	0	multi-exon	FALSE	canonical	1	1	junction_1	4.94974746830583	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTGGCTGGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	145811246	145803968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_145809465_145809856_145809969_145810301_145810410_145810722_145810787_145810931
ES_00048467	chr6	-	257	1	FSM	ENSMUSG00000030287.16	ENSMUST00000204901.2	1504	1	-71	1318	-71	-1318	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTCCTGTGCCATGTGT	NA	False	NA	NA	False	NA	NA	NA	146134048	146133791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_146133800_146134000
ES_00048469	chr6	-	2952	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479304	146451129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ES_00048470	chr6	-	3059	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479333	146451129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ES_00048471	chr6	-	3520	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	7	3	intron_retention	FALSE	canonical	3	31	junction_5	58.7136175762394	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGTATCGGAGTGTTA	NA	False	NA	-8	True	AATAAA	-20	NA	146479271	146451135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456551_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ES_00048472	chr6	-	3396	13	NNC	ENSMUSG00000040234.17	novel	3241	12	NA	NA	-129	45538	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	265.275786787177	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTTTAGGGTTCGACTT	NA	False	NA	NA	False	NA	NA	NA	146536224	146458311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_146458339_146503850_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
ES_00048473	chr6	-	233	2	Intergenic	novelGene_3565	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	1871	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTGATCTTTAGGGTT	NA	False	NA	NA	False	NA	NA	NA	146538562	146458317	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_146458422_146538433
ES_00048475	chr6	-	4535	1	FSM	ENSMUSG00000040250.15	ENSMUST00000205078.2	4601	1	-55	121	0	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGCCAAGAAGTGGGAGT	NA	False	NA	NA	False	NA	NA	NA	146479333	146474798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_146474800_146479300
ES_00048476	chr6	-	3295	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	0	-54	0	54	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTATATAAATTTAATCT	NA	False	NA	NA	False	NA	NA	NA	146536095	146503795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
ES_00048477	chr6	-	4036	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	138	0	-129	0	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	148113734	148080576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ES_00048478	chr6	-	1661	13	FSM	ENSMUSG00000030304.12	ENSMUST00000032446.12	1661	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	272.167381097246	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACTGGCCCTGTGTTAC	NA	False	NA	29	True	AATAAA	-7	NA	148113605	148082713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148108030_148108174_148113467
ES_00048488	chr6	-	3649	12	FSM	ENSMUSG00000040029.16	ENSMUST00000239062.2	3641	12	0	-8	0	0	multi-exon	FALSE	canonical	3	31	junction_1	62.5899683034862	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCTGCTCTATGGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	148701330	148672180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148674305_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224
ES_00048490	chr6	-	5216	25	NIC	ENSMUSG00000040029.16	novel	5360	25	NA	NA	95	3	combination_of_known_junctions	TRUE	canonical	3	31	junction_1	45.5182350517045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACTCTGTCTGCTCTAT	NA	False	NA	-6	True	AATAAA	-22	NA	148732829	148672185	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_148674305_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
ES_00048491	chr6	-	1264	10	FSM	ENSMUSG00000040029.16	ENSMUST00000145960.2	1262	10	0	-2	0	0	multi-exon	FALSE	canonical	2	8	junction_2	72.46727656563	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATACAGTTGTTCTTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	148732924	148703411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148703488_148706119_148706220_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
ES_00048492	chr6	-	1408	11	FSM	ENSMUSG00000040029.16	ENSMUST00000204936.2	1408	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	65.1536645170477	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATACAGTTGTTCTTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	148732962	148703411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725955_148732661
ES_00048494	chr6	-	1035	5	FSM	ENSMUSG00000030309.17	ENSMUST00000127941.8	1035	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	34.662660024874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148752894	148743990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148744553_148746669_148746734_148747650_148747752_148749603_148749790_148752772
ES_00048495	chr6	-	2953	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	0	-1	0	0	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	-1	True	AATAAA	-14	NA	148797648	148743989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
ES_00048498	chr6	-	2700	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	0	-3	0	3	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTAAGAATTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	148847965	148822529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
ES_00048507	chr6	-	9755	22	NIC	ENSMUSG00000030313.16	novel	9831	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_20	5.58829356273547	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTTTTGTTTCACT	NA	False	NA	1	True	AATAAA	-16	NA	149003036	148889568	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_148895388_148899754_148899930_148901418_148901546_148902096_148902180_148906663_148906852_148908223_148908343_148911252_148911399_148915613_148915736_148918479_148918609_148920838_148920921_148922042_148922122_148928780_148928934_148930607_148930740_148934763_148934858_148937883_148938035_148943013_148943246_148945980_148946518_148956397_148956586_148969547_148970215_148982303_148982414_148986368_148986435_149002680
ES_00048508	chr6	-	9786	21	FSM	ENSMUSG00000030313.16	ENSMUST00000111557.8	9831	21	45	0	45	0	multi-exon	FALSE	canonical	3	13	junction_11	5.03487835006964	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTTTTGTTTCACT	NA	False	NA	1	True	AATAAA	-16	NA	149003133	148889568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148895388_148899754_148899930_148901418_148901546_148902096_148902180_148906663_148906852_148908223_148908343_148911252_148911399_148915613_148915736_148918479_148918609_148920838_148920921_148922042_148922122_148928780_148928934_148930607_148930740_148934763_148934858_148937883_148938035_148943013_148943246_148945980_148946518_148956397_148956586_148969547_148970215_148982303_148982414_149002680
ES_00048511	chr6	-	852	6	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	34.1607962436475	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTGTCCCATATTTATT	NA	False	NA	-2	True	TATAAA	-28	NA	149090170	149059076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149090103
ES_00048513	chr6	-	297	1	FSM	ENSMUSG00000082072.2	ENSMUST00000119145.2	694	1	592	-195	592	195	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCTTACTTTCTATTTC	NA	False	NA	NA	False	NA	NA	NA	149335379	149335082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_149335100_149335400
ES_00048515	chr6	+	486	1	Intergenic	novelGene_3351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAGAAGCAGAAACAATAA	NA	False	NA	NA	False	NA	NA	NA	3161446	3161932	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_3161400_3161900
ES_00048516	chr6	+	775	1	Intergenic	novelGene_3353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAACTTAGAGGCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	3162387	3163162	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_3162400_3163200
ES_00048517	chr6	+	793	1	Intergenic	novelGene_3354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGTATGGTTGCAAA	25	False	NA	97	True	NA	NA	NA	3200818	3201611	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_3200800_3201600
ES_00048518	chr6	+	1437	1	Intergenic	novelGene_3358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	678	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACAATGATAAAATAATTA	NA	False	NA	NA	False	NA	NA	NA	7026164	7027601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_7026200_7027600
ES_00048519	chr6	+	211	1	Intergenic	novelGene_3359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTATTGGAATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	7637703	7637914	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_7637700_7637900
ES_00048520	chr6	+	215	1	Intergenic	novelGene_3362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCTCAGCCTGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	12831370	12831585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_12831400_12831600
ES_00048521	chr6	+	458	1	Intergenic	novelGene_3363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	761	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCAGTACAGGGGAACGC	NA	False	NA	NA	False	NA	NA	NA	12875388	12875846	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_12875400_12875800
ES_00048522	chr6	+	206	1	Intergenic	novelGene_3365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCTCCTTTTCAACAAG	NA	False	NA	NA	False	NA	NA	NA	14419486	14419692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_14419500_14419700
ES_00048523	chr6	+	277	1	Intergenic	novelGene_3367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGCCCGACCCAACCT	NA	False	NA	NA	False	NA	NA	NA	16879201	16879478	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_16879200_16879500
ES_00048524	chr6	+	277	1	Intergenic	novelGene_3372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	900	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCATCTCTCTGCCATT	NA	False	NA	NA	False	NA	NA	NA	19326793	19327070	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_19326800_19327100
ES_00048525	chr6	+	232	1	Intergenic	novelGene_3373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	464	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATAGTTTCTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20960464	20960696	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_20960500_20960700
ES_00048526	chr6	+	249	1	Intergenic	novelGene_3377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTCAGCACTGGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	29459923	29460172	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29459900_29460200
ES_00048527	chr6	+	207	1	Intergenic	novelGene_3380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCAAGTGAGCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	29658455	29658662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29658500_29658700
ES_00048528	chr6	+	239	1	Intergenic	novelGene_3387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGAGACCCCCATCTCA	NA	False	NA	NA	False	NA	NA	NA	30537389	30537628	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_30537400_30537600
ES_00048529	chr6	+	214	1	Intergenic	novelGene_3389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACACATTTCTATACCCT	NA	False	NA	NA	False	NA	NA	NA	35090914	35091128	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_35090900_35091100
ES_00048530	chr6	+	201	1	Intergenic	novelGene_3390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	660	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACGTTCTTCTGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	35124405	35124606	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_35124400_35124600
ES_00048531	chr6	+	210	1	Intergenic	novelGene_3391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACTGTAAGTCTTTAACA	731	False	NA	NA	False	NA	NA	NA	35185972	35186182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_35186000_35186200
ES_00048532	chr6	+	218	1	Intergenic	novelGene_3392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAGAAAGATTCATA	NA	False	NA	NA	False	NA	NA	NA	36421839	36422057	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_36421800_36422100
ES_00048533	chr6	+	203	1	Intergenic	novelGene_3393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAGCAATTCTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	37394141	37394344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_37394100_37394300
ES_00048534	chr6	+	201	1	Intergenic	novelGene_3397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTTTTAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	37973556	37973757	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_37973600_37973800
ES_00048535	chr6	+	202	1	Intergenic	novelGene_3399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	587	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCCTTCACGTCAGAC	NA	False	NA	NA	False	NA	NA	NA	38034693	38034895	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38034700_38034900
ES_00048536	chr6	+	221	1	Intergenic	novelGene_3407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATCTTCCTTGTAGGGAG	5184	False	NA	NA	False	NA	NA	NA	38616300	38616521	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38616300_38616500
ES_00048537	chr6	+	255	1	Intergenic	novelGene_3408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTATTTACTATGGGA	9883	False	NA	NA	False	TATAAA	-25	NA	38620999	38621254	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38621000_38621300
ES_00048538	chr6	+	232	1	Intergenic	novelGene_3411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAGTAATCTTATGGT	9475	False	NA	NA	False	NA	NA	NA	39430060	39430292	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39430100_39430300
ES_00048539	chr6	+	274	1	Intergenic	novelGene_3419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCTCAGGTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	42996691	42996965	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_42996700_42997000
ES_00048540	chr6	+	319	1	Intergenic	novelGene_3421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	760	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGGGCCACTTTTGGTA	NA	False	NA	NA	False	NA	NA	NA	44769861	44770180	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_44769900_44770200
ES_00048541	chr6	+	221	1	Intergenic	novelGene_3426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	466	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTAGGAGTCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	47387415	47387636	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47387400_47387600
ES_00048542	chr6	+	218	1	Intergenic	novelGene_3427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1556	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGGAACTGTTAACTGA	NA	False	NA	NA	False	NA	NA	NA	47564205	47564423	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47564200_47564400
ES_00048543	chr6	+	256	1	Intergenic	novelGene_3429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAAAAGTATATACTAGT	NA	False	NA	NA	False	AAGAAA	-10	NA	47756297	47756553	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47756300_47756600
ES_00048546	chr6	+	201	1	Intergenic	novelGene_3435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTTCACTAAAATTCAAA	NA	False	NA	NA	False	NA	NA	NA	49995285	49995486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_49995300_49995500
ES_00048547	chr6	+	207	1	Intergenic	novelGene_3438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTACATGAGTACAGTG	3561	False	NA	NA	False	NA	NA	NA	51481037	51481244	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_51481000_51481200
ES_00048548	chr6	+	241	1	Intergenic	novelGene_3439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTTTCAACTATCAGT	2183	False	NA	NA	False	NA	NA	NA	51578064	51578305	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_51578100_51578300
ES_00048549	chr6	+	370	1	Intergenic	novelGene_3440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	303	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTTCTCTCTAAACA	1037	False	NA	NA	False	ATTAAA	-32	NA	52119438	52119808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_52119400_52119800
ES_00048550	chr6	+	211	1	Intergenic	novelGene_3441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTTCTCACATGAT	NA	False	NA	NA	False	NA	NA	NA	52348642	52348853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_52348600_52348900
ES_00048551	chr6	+	308	1	Intergenic	novelGene_3442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTCTGATTTCATTAA	NA	False	NA	NA	False	NA	NA	NA	52687619	52687927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_52687600_52687900
ES_00048553	chr6	+	223	1	Intergenic	novelGene_3445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTTTTTTTAAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	54394360	54394583	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_54394400_54394600
ES_00048554	chr6	+	209	1	Intergenic	novelGene_3449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	336	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTTGGAGATCTTAAGAG	NA	False	NA	NA	False	NA	NA	NA	57726662	57726871	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_57726700_57726900
ES_00048555	chr6	+	2509	1	Intergenic	novelGene_3452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGTCTAGCAGCATAC	NA	False	NA	NA	False	AATAAA	-38	NA	64873936	64876445	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_64873900_64876400
ES_00048556	chr6	+	312	1	Intergenic	novelGene_3454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTAAGTTTTTTTC	NA	False	NA	66	True	NA	NA	NA	64977750	64978062	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_64977800_64978100
ES_00048557	chr6	+	202	1	Intergenic	novelGene_3456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	373	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAAGATTTATTTATG	69	False	NA	NA	False	NA	NA	NA	65022277	65022479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_65022300_65022500
ES_00048558	chr6	+	343	1	Intergenic	novelGene_3460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAACCAAGCTTTAATG	NA	False	NA	NA	False	NA	NA	NA	67631518	67631861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_67631500_67631900
ES_00048561	chr6	+	216	1	Intergenic	novelGene_3467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTTACTGTCATTTAT	NA	False	NA	NA	False	AAAAAG	-23	NA	75862844	75863060	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_75862800_75863100
ES_00048562	chr6	+	234	1	Intergenic	novelGene_3469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAATTCTTATCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	79008204	79008438	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_79008200_79008400
ES_00048565	chr6	+	218	1	Intergenic	novelGene_3471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCGCAAATTTAAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	83682055	83682273	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_83682100_83682300
ES_00048566	chr6	+	297	1	Intergenic	novelGene_3473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTACTAAAAAAGAGGATCA	3507	False	NA	128	True	NA	NA	NA	83870927	83871224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_83870900_83871200
ES_00048568	chr6	+	204	1	Intergenic	novelGene_3479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGAACTTTCTATGTG	2157	False	NA	NA	False	NA	NA	NA	86580474	86580678	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_86580500_86580700
ES_00048570	chr6	+	261	1	Intergenic	novelGene_3481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGCTGACTTTCAATAGA	NA	False	NA	NA	False	NA	NA	NA	87974176	87974437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_87974200_87974400
ES_00048571	chr6	+	225	1	Intergenic	novelGene_3483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAAAATTGTTGCTGAG	3315	False	NA	NA	False	NA	NA	NA	88051395	88051620	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_88051400_88051600
ES_00048572	chr6	+	1143	1	Intergenic	novelGene_3484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGAAACTAAGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	88544811	88545954	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_88544800_88546000
ES_00048574	chr6	+	216	1	Intergenic	novelGene_3489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCCCTGTTACCCAGT	NA	False	NA	NA	False	NA	NA	NA	91641148	91641364	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_91641100_91641400
ES_00048576	chr6	+	234	1	Intergenic	novelGene_3493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCACCTCAATAAATGAAAG	NA	False	NA	NA	False	NA	NA	NA	94270739	94270973	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_94270700_94271000
ES_00048578	chr6	+	204	1	Intergenic	novelGene_3494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGGTCTGAGTAGGGGCA	NA	False	NA	NA	False	NA	NA	NA	96853869	96854073	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_96853900_96854100
ES_00048579	chr6	+	3248	1	Intergenic	novelGene_3495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGTCCCTGTTCGGGCG	3218	False	NA	NA	False	NA	NA	NA	97628222	97631470	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_97628200_97631500
ES_00048580	chr6	+	220	1	Intergenic	novelGene_3496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATCCTGCGCTGGGCAG	NA	False	NA	NA	False	NA	NA	NA	98890505	98890725	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_98890500_98890700
ES_00048582	chr6	+	224	1	Intergenic	novelGene_3501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCGGGAAAGAGCGAGAG	NA	False	NA	NA	False	NA	NA	NA	109482079	109482303	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_109482100_109482300
ES_00048584	chr6	+	208	1	Intergenic	novelGene_3505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAACTTTCAATTGTGAG	NA	False	NA	NA	False	NA	NA	NA	114842022	114842230	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_114842000_114842200
ES_00048587	chr6	+	216	1	Intergenic	novelGene_3516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCGCAGGTTCAGACAGA	NA	False	NA	NA	False	NA	NA	NA	118450554	118450770	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_118450600_118450800
ES_00048590	chr6	+	378	1	Intergenic	novelGene_3519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGATCACAAGAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	120204665	120205043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120204700_120205000
ES_00048591	chr6	+	307	1	Intergenic	novelGene_3531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTCTAACATCAAACGGTA	NA	False	NA	NA	False	NA	NA	NA	122452857	122453164	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_122452900_122453200
ES_00048592	chr6	+	220	1	Intergenic	novelGene_3532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGGGCGAGTTCTCTAT	NA	False	NA	NA	False	NA	NA	NA	122621376	122621596	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_122621400_122621600
ES_00048594	chr6	+	202	1	Intergenic	novelGene_3534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	369	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCCTTAAGAAAAATGATT	NA	False	NA	NA	False	NA	NA	NA	123389633	123389835	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_123389600_123389800
ES_00048595	chr6	+	1158	1	Intergenic	novelGene_3536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCAGAATTTTCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	124267703	124268861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_124267700_124268900
ES_00048596	chr6	+	232	1	Intergenic	novelGene_3537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAAGGCAAGGGTGG	7393	False	NA	NA	False	NA	NA	NA	124500569	124500801	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_124500600_124500800
ES_00048597	chr6	+	1005	1	Intergenic	novelGene_3540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCCTCCAAATTTTGATAC	NA	False	NA	NA	False	NA	NA	NA	124776677	124777682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_124776700_124777700
ES_00048605	chr6	+	1662	1	Intergenic	novelGene_3551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAAGAGTTTTAGTCTT	NA	False	NA	NA	False	NA	NA	NA	127491496	127493158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_127491500_127493200
ES_00048611	chr6	+	202	1	Intergenic	novelGene_3555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	343	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTGTTTTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	128697200	128697402	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_128697200_128697400
ES_00048615	chr6	+	262	1	Intergenic	novelGene_3556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGCCTTACACAGGAATT	4184	False	NA	NA	False	NA	NA	NA	128842634	128842896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_128842600_128842900
ES_00048616	chr6	+	579	1	Intergenic	novelGene_3558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCAATTCAGAGATCAGG	91	False	NA	NA	False	NA	NA	NA	128843385	128843964	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_128843400_128844000
ES_00048620	chr6	+	232	1	Intergenic	novelGene_3560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	664	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACATTTTTCTCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	131942632	131942864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_131942600_131942900
ES_00048622	chr6	+	439	1	Intergenic	novelGene_3561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCACATCCTCCACTTC	NA	False	NA	NA	False	NA	NA	NA	132433412	132433851	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_132433400_132433900
ES_00048624	chr6	+	205	1	Intergenic	novelGene_3562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTCTTTTCCTCCAGGGC	NA	False	NA	NA	False	NA	NA	NA	132717241	132717446	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_132717200_132717400
ES_00048625	chr6	+	4785	1	Intergenic	novelGene_3563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCTTATGATGCATCTTT	NA	False	NA	NA	False	NA	NA	NA	133986287	133991072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_133986300_133991100
ES_00048627	chr6	+	254	1	Intergenic	novelGene_3564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCAGGTTTACCCATC	NA	False	NA	NA	False	NA	NA	NA	145878500	145878754	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_145878500_145878800
ES_00048633	chr6	+	3485	27	NIC	ENSMUSG00000001376.18	novel	3788	28	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	36.3698132193371	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTGTGTGAGACTACTA	13	True	NA	22	True	AATAAA	-19	NA	3498432	3603315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ES_00048634	chr6	+	914	2	FSM	ENSMUSG00000032766.10	ENSMUST00000031670.10	919	2	0	5	0	-5	multi-exon	FALSE	canonical	1	1	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATGTTGGTGACTTAAG	9869	False	NA	7	True	AATAAA	-17	NA	4003903	4008440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_4004412_4008034
ES_00048635	chr6	+	358	1	FSM	ENSMUSG00000108014.2	ENSMUST00000203125.2	293	1	13	-78	13	78	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCGTTCTCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	4367786	4368144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_4367800_4368100
ES_00048636	chr6	+	743	4	FSM	ENSMUSG00000032827.16	ENSMUST00000065842.7	885	4	142	0	142	0	multi-exon	FALSE	canonical	1	1	junction_3	4.98887651569859	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTATTTCTTCCTGAGGA	2942	False	NA	NA	False	NA	NA	NA	5113600	5116508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_5113831_5115118_5115216_5115308_5115481_5116264
ES_00048637	chr6	+	6586	5	NIC	ENSMUSG00000032827.16	novel	9395	18	NA	NA	40599	-1	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	1.4142135623731	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGGAGTCCATGTTTCT	NA	False	NA	2	True	AATAAA	-15	NA	5154057	5165660	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_5154208_5156120_5156241_5157003_5157028_5158088_5158272_5159551
ES_00048638	chr6	+	2996	12	NNC	ENSMUSG00000042447.14	novel	3710	12	NA	NA	104	-662	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	118.279679762113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTTTGAGTGACTT	5	True	NA	17	True	AATAAA	-20	NA	8209325	8235606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_8209416_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233309_8234231_8234362_8235384
ES_00048639	chr6	+	1968	3	FSM	ENSMUSG00000089862.9	ENSMUST00000159168.3	1975	3	7	0	7	0	multi-exon	FALSE	canonical	2	17	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTTCATTGCATTAGTA	NA	False	NA	NA	False	AATAAA	-29	NA	8270472	8428767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_8270582_8373905_8373968_8426970
ES_00048640	chr6	+	6200	8	FSM	ENSMUSG00000029638.18	ENSMUST00000064285.15	6200	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.04389653609465	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTACATGTGTTTTTAA	153	False	NA	NA	False	AATAAA	-20	NA	8509599	8597548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_8510320_8537816_8537969_8558499_8558587_8573184_8573299_8579586_8579740_8582579_8582791_8591544_8591666_8592906
ES_00048641	chr6	+	3327	16	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	23	-398	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	26.8104457255004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGAGTTTATTTTTTGTT	-33	True	NA	16	True	AATAAA	-22	NA	11907830	12007614	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983
ES_00048642	chr6	+	3162	18	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	28.9182118357714	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTTGAAATTCATATTT	37	False	NA	8	True	AATAAA	-19	NA	11907809	12081200	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
ES_00048643	chr6	+	3371	17	FSM	ENSMUSG00000029629.18	ENSMUST00000115510.8	3353	17	-18	0	-18	0	multi-exon	FALSE	canonical	3	33	junction_16	37.0717210282986	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATTGTATGATTTA	NA	False	NA	NA	False	AATAAA	-17	NA	11925861	12008012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12007703
ES_00048644	chr6	+	3917	16	FSM	ENSMUSG00000029629.18	ENSMUST00000090632.11	3985	16	0	68	0	0	multi-exon	FALSE	canonical	3	71	junction_1	26.0421879947818	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATTGTATGATTTA	8	True	NA	NA	False	AATAAA	-17	NA	11925913	12008012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983
ES_00048645	chr6	+	1350	1	FSM	ENSMUSG00000108046.2	ENSMUST00000204851.2	1736	1	178	208	178	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTAAGTTTGCAACTAGA	NA	False	NA	NA	False	AATAAA	-10	NA	15811499	15812849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_15811500_15812800
ES_00048646	chr6	+	536	3	Intergenic	novelGene_3366	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	1.5	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTTTAAGGGATACAA	NA	False	NA	NA	False	AATAAA	-12	NA	15853143	15884846	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_15853247_15878053_15878161_15884520
ES_00048649	chr6	+	231	1	Intergenic	novelGene_3374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATAAACAAATTAA	NA	False	NA	NA	False	NA	NA	NA	22305255	22305486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_22305300_22305500
ES_00048650	chr6	+	1408	1	FSM	ENSMUSG00000001424.15	ENSMUST00000183161.2	2420	1	-94	1106	-13	-1106	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCGGTTCGCATCTTCAC	5222	False	NA	NA	False	NA	NA	NA	28480333	28481741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_28480300_28481700
ES_00048651	chr6	+	718	5	FSM	ENSMUSG00000001424.15	ENSMUST00000165151.2	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_3	41.7933906257915	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATTCCAAGGGCGATGT	NA	False	NA	NA	False	NA	NA	NA	28880041	28886526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412
ES_00048652	chr6	+	3320	7	FSM	ENSMUSG00000029767.17	ENSMUST00000174096.7	1670	7	0	-1650	0	0	multi-exon	FALSE	canonical	3	15	junction_2	364.577114232671	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	8290	False	NA	118	True	AATAAA	-22	NA	29356469	29376674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29356697_29361292_29361487_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ES_00048653	chr6	+	696	2	Intergenic	novelGene_3378	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGTGTATAATGTGTAT	NA	False	NA	8	True	AATAAA	-18	NA	29638998	29642168	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29639206_29641679
ES_00048654	chr6	+	203	1	Intergenic	novelGene_3381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAGCTATCTCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	29661361	29661564	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29661400_29661600
ES_00048656	chr6	+	5164	17	FSM	ENSMUSG00000029772.18	ENSMUST00000115242.9	5152	17	-12	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	29.2814334305887	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCCTGAGAATACCA	-29	True	NA	9	True	AATAAA	-17	NA	29768478	29912309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29768906_29863138_29863251_29870566_29870711_29871184_29871286_29878527_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
ES_00048657	chr6	+	5275	21	FSM	ENSMUSG00000039629.15	ENSMUST00000151738.4	5281	21	6	0	5	0	multi-exon	FALSE	canonical	1	2	junction_19	5.36097006147208	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGGTCTTTAGTT	0	True	NA	NA	False	AATAAA	-18	NA	29917016	29959674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29917230_29920460_29920531_29923913_29923989_29924964_29925103_29926555_29926677_29927319_29927389_29927585_29927693_29928433_29928562_29929778_29929983_29931118_29931355_29931762_29931829_29932201_29932266_29932988_29933061_29937579_29937655_29938460_29938559_29939035_29939163_29941837_29941939_29944424_29944492_29953347_29953453_29955514_29955636_29956656
ES_00048658	chr6	+	924	2	FSM	ENSMUSG00000045709.12	ENSMUST00000141679.3	1003	2	76	3	-51	-3	multi-exon	FALSE	canonical	3	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTCTGCTTAGCAGTC	7	False	NA	NA	False	AATAAA	-14	NA	29985309	29993774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29985466_29993006
ES_00048659	chr6	+	213	1	Intergenic	novelGene_3384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTAACACAGTTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	30042084	30042297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_30042100_30042300
ES_00048660	chr6	+	2491	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115200.8	2491	12	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_11	150.023028535319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGATTTGCACAGCTTTAT	0	True	NA	NA	False	AATAAA	-22	NA	30048070	30130115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30129179
ES_00048661	chr6	+	1466	1	FSM	ENSMUSG00000103108.3	ENSMUST00000194541.3	2234	1	484	284	484	-284	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGGCCATCTGGAACGAGG	510	False	NA	NA	False	NA	NA	NA	30173375	30174841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30173400_30174800
ES_00048662	chr6	+	387	4	FSM	ENSMUSG00000071553.11	ENSMUST00000144282.2	450	4	63	0	63	0	multi-exon	FALSE	canonical	2	2	junction_2	1.63299316185545	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGAAGCATCGACTGGGC	502	False	NA	NA	False	NA	NA	NA	30551964	30564247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30552056_30554162_30554363_30557670_30557756_30564236
ES_00048664	chr6	+	2454	19	NNC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	0	45287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	167.353104926067	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	31375793	31539033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559_31484898_31539001
ES_00048667	chr6	+	2413	10	NNC	ENSMUSG00000029763.18	novel	2598	10	NA	NA	15	-15827	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	43.5782253929077	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGTAAACAGATTGTGT	NA	False	NA	NA	False	AGTAAA	-25	NA	33226085	33438257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33437266
ES_00048669	chr6	+	1443	4	FSM	ENSMUSG00000038836.16	ENSMUST00000115014.8	805	4	-446	-192	1	117	multi-exon	FALSE	canonical	2	5	junction_3	0.816496580927726	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTTTAGACAATTTCAAAA	1670	False	NA	NA	False	NA	NA	NA	34757377	34762771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34757995_34759034_34759154_34760504_34760566_34762125
ES_00048670	chr6	+	6456	43	NNC	ENSMUSG00000038759.16	novel	4508	30	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_1	74.8991347445852	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAATGTGTGGTCATTC	NA	False	NA	NA	False	AATAAA	-16	NA	35154637	35224531	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_35154912_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
ES_00048672	chr6	+	248	2	Intergenic	novelGene_3398	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTGTTTTTAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	38030989	38089628	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38031020_38089410
ES_00048674	chr6	+	4536	18	NIC	ENSMUSG00000038538.18	novel	14644	17	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	13.1069595079581	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	18	True	NA	NA	NA	38410859	38479514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_38411534_38417389_38417483_38429804_38429907_38438409_38438548_38439897_38440002_38440488_38440979_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38466188_38466240_38467318_38468867_38475622_38475855_38476121_38476212_38479172
ES_00048676	chr6	+	1765	3	NNC	ENSMUSG00000029823.17	novel	2846	3	NA	NA	0	45464	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTCTTGAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	38528399	38631869	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_38528844_38531914_38533108_38631741
ES_00048677	chr6	+	4217	9	ISM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	66	3103	0	0	5prime_fragment	FALSE	canonical	3	65	junction_1	24.3567239176372	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTGTGAGAAGGAAGGT	NA	False	NA	NA	False	AAAAAG	-5	NA	38528465	38583302	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
ES_00048679	chr6	+	203	2	Antisense	novelGene_ENSMUSG00000029924.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAATCGAAATGCATCAAA	NA	False	NA	NA	False	NA	NA	NA	39296648	39342962	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_39296704_39342814
ES_00048680	chr6	+	1365	4	FSM	ENSMUSG00000029923.5	ENSMUST00000031986.5	1575	4	208	2	208	-2	multi-exon	FALSE	canonical	2	2	junction_1	0.471404520791032	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGTGTTGTGTCACCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	39358316	39367312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_39358444_39360841_39361055_39364942_39365127_39366471
ES_00048681	chr6	+	250	1	Intergenic	novelGene_3416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAAATGCACAGGCCATT	NA	False	NA	NA	False	NA	NA	NA	39750748	39750998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39750700_39751000
ES_00048682	chr6	+	1306	3	FSM	ENSMUSG00000029916.12	ENSMUST00000202949.2	2175	3	-344	1213	-8	138	multi-exon	FALSE	canonical	3	547	junction_1	65.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGTTTTAAGAATTTGA	NA	False	NA	NA	False	AATAAA	-17	NA	40302097	40325177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40302465_40306426_40306534_40324345
ES_00048684	chr6	+	2595	1	FSM	ENSMUSG00000071506.5	ENSMUST00000238607.2	2595	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCAGTGCCTCCTGTTT	NA	False	NA	NA	False	AGTAAA	-29	NA	42238892	42241487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_42238900_42241500
ES_00048685	chr6	+	3632	10	ISM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	45	4	-26	-4	intron_retention	FALSE	canonical	3	71	junction_8	18.6309181499762	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTGTGCCTGGTGTT	NA	False	NA	9	True	AATAAA	-16	NA	42241963	42259438	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017
ES_00048688	chr6	+	1741	4	FSM	ENSMUSG00000033542.14	ENSMUST00000183313.2	2319	4	560	18	292	-18	multi-exon	FALSE	canonical	1	3	junction_3	1.63299316185545	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTGGCACTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	43260107	43266231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_43260989_43262292_43262364_43264473_43264579_43265547
ES_00048690	chr6	+	8320	5	FSM	ENSMUSG00000062519.14	ENSMUST00000114598.3	8328	5	8	0	8	0	multi-exon	FALSE	canonical	1	1	junction_1	10.0343161201947	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTATGTGGGTGTGTGC	NA	False	NA	NA	False	AATAAA	-20	NA	47812636	47850471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47812855_47835862_47835990_47836352_47836467_47840037_47840152_47842724
ES_00048691	chr6	+	2711	6	NNC	ENSMUSG00000052763.8	novel	2801	5	NA	NA	108	44344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	67.2707960410757	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAAACCCTTATG	NA	False	NA	NA	False	NA	NA	NA	47897517	47953917	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644_47909563_47953888
ES_00048693	chr6	+	1293	5	NIC	ENSMUSG00000042810.15	novel	4000	18	NA	NA	11	2446	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	21.4053147605916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACTCCAGTTAGCTGT	NA	False	NA	NA	False	AATAAA	-24	NA	48372602	48382847	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_48372822_48379817_48379945_48380311_48380432_48380924_48381075_48382170
ES_00048694	chr6	+	5693	8	FSM	ENSMUSG00000042810.15	ENSMUST00000154536.4	5693	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_6	5.19418827505653	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAGCAAGCTGATTAAC	NA	False	NA	NA	False	GATAAA	-24	NA	48386132	48396479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48391086_48391423_48391535_48392509
ES_00048698	chr6	+	2948	2	FSM	ENSMUSG00000052751.17	ENSMUST00000163452.7	2959	2	11	0	3	0	multi-exon	FALSE	canonical	3	7	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGGTGGTGTTCTTT	NA	False	NA	20	True	AATAAA	-18	NA	48570827	48576015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48570987_48573226
ES_00048700	chr6	+	324	2	Genic_Genomic	ENSMUSG00000107962.2	novel	1612	1	NA	NA	1484	94263	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCAGTCTTGGGGAAAA	NA	False	NA	NA	False	NA	NA	NA	49233268	49327659	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_+_49233403_49327469
ES_00048701	chr6	+	588	2	FSM	ENSMUSG00000047115.16	ENSMUST00000141910.2	661	2	73	0	73	0	multi-exon	FALSE	canonical	3	39	junction_1	0	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATACATAGGGTCAG	NA	False	NA	NA	False	ATTAAA	-7	NA	49362258	49366207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_49362390_49365750
ES_00048702	chr6	+	1079	8	NIC	ENSMUSG00000023403.15	novel	2988	23	NA	NA	-115	-45643	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	82.8418705136725	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAAAGAATTTTCTA	58	False	NA	NA	False	NA	NA	NA	49372422	49400643	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309
ES_00048703	chr6	+	2414	19	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-115	-4	combination_of_known_splicesites	FALSE	canonical	2	36	junction_17	69.6486996147429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTGAAAATCATTCATAT	58	False	NA	NA	False	AATAAA	-17	NA	49372422	49446430	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49442402_49442472_49446061
ES_00048704	chr6	+	2426	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	54.5748107857386	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	173	False	NA	NA	False	AATAAA	-21	NA	49372537	49446434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ES_00048706	chr6	+	2418	12	FSM	ENSMUSG00000038388.15	ENSMUST00000204545.3	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	329.215822601587	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCTCTCTCTAGTCAAC	NA	False	NA	NA	False	GATAAA	-23	NA	50087257	50175919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_50087445_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ES_00048708	chr6	+	1080	6	FSM	ENSMUSG00000029836.16	ENSMUST00000094623.10	1080	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	932.93077985454	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTTGTTTTTAACT	NA	False	NA	NA	False	CATAAA	-16	NA	51447339	51460013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_51447412_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ES_00048709	chr6	+	2369	7	NNC	ENSMUSG00000038301.16	novel	2480	7	NA	NA	17	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	129.562082930668	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAACAAAACTTTGTTCG	NA	False	NA	NA	False	ATTAAA	-13	NA	51500978	51567648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_51501013_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ES_00048710	chr6	+	1006	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-13	542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	63.3368420080726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACAACTAAGATCCATC	765	False	NA	NA	False	AATAAA	-22	NA	52079915	52090050	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_52080017_52082951_52083011_52083749_52083877_52089331
ES_00048711	chr6	+	314	1	FSM	ENSMUSG00000081979.2	ENSMUST00000121011.2	650	1	502	-166	502	166	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATAAATTTCTTTCCAA	NA	False	NA	NA	False	ATTAAA	-3	NA	52095723	52096037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_52095700_52096000
ES_00048713	chr6	+	518	4	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26239	-9170	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	4.02768199119819	69	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821966	53835998	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835823
ES_00048714	chr6	+	224	2	Intergenic	novelGene_3446	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	414	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAATCTCTTCTTTATGG	NA	False	NA	NA	False	NA	NA	NA	54628259	54647679	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_54628313_54647508
ES_00048715	chr6	+	2528	17	NNC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	-149	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	747.261037786495	289	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014842	55056485	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046326_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ES_00048717	chr6	+	200	3	Antisense	novelGene_ENSMUSG00000004347.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACTCCCCTTTTATGGC	NA	False	NA	NA	False	NA	NA	NA	56155642	56217660	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_56155670_56204070_56204099_56217515
ES_00048718	chr6	+	455	4	NNC	ENSMUSG00000029802.14	novel	348	3	NA	NA	-39	-17652	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.55902608401044	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAGGGAGAATGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	58572920	58615141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_58573003_58573959_58574094_58612502_58612666_58615065
ES_00048719	chr6	+	348	3	FSM	ENSMUSG00000029802.14	ENSMUST00000148008.2	348	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	21.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCTAGTCCGGAAAACAG	NA	False	NA	NA	False	AGTAAA	-7	NA	58572959	58632793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_58573003_58573959_58574094_58632622
ES_00048721	chr6	+	402	1	FSM	ENSMUSG00000107484.2	ENSMUST00000205050.2	691	1	395	-106	395	106	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGCAACAAAAAAATAATG	NA	False	NA	NA	False	AATAAA	-12	NA	63137653	63138055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_63137700_63138100
ES_00048722	chr6	+	603	1	Intergenic	novelGene_3455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGTCATCTTTTATGTA	NA	False	NA	NA	False	NA	NA	NA	64981526	64982129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_64981500_64982100
ES_00048727	chr6	+	1680	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAATTAAGCCTTGT	NA	False	NA	48	True	TATAAA	-25	NA	66512408	66518004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ES_00048729	chr6	+	397	3	FSM	ENSMUSG00000036371.7	ENSMUST00000204810.2	397	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGACCACCCCGTGAAAGA	9645	False	NA	-12	True	NA	NA	NA	67215159	67248256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67215355_67224347_67224475_67248181
ES_00048731	chr6	+	1273	8	NIC	ENSMUSG00000036371.7	novel	1336	8	NA	NA	2	4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	2360.17516644984	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	5942	False	NA	23	True	NA	NA	NA	67244064	67261035	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249217_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ES_00048734	chr6	+	497	1	FSM	ENSMUSG00000108813.2	ENSMUST00000205423.2	588	1	104	-13	104	13	mono-exon	FALSE	NA	NA	NA	NA	NA	394	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTACATAGCGGCCTGGC	NA	False	NA	NA	False	AATAAA	-13	NA	71660385	71660882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71660400_71660900
ES_00048735	chr6	+	1287	1	FSM	ENSMUSG00000108802.2	ENSMUST00000206120.2	2809	1	80	1442	80	-1442	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTTCTCTGAATGAAAGT	NA	False	NA	NA	False	NA	NA	NA	71767731	71769018	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71767700_71769000
ES_00048736	chr6	+	2735	15	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	-43	0	combination_of_known_junctions	TRUE	canonical	3	160	junction_4	344.10840870106	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACTGAGTACTC	NA	False	NA	-1	True	AATAAA	-6	NA	71808271	71852228	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ES_00048738	chr6	+	1026	1	FSM	ENSMUSG00000052337.16	ENSMUST00000205371.2	3476	1	1976	474	1976	-474	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	71842508	71843534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71842500_71843500
ES_00048740	chr6	+	275	1	FSM	ENSMUSG00000052337.16	ENSMUST00000206625.2	3050	1	3030	-255	1523	255	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAGTAAGCACAATAC	NA	False	NA	NA	False	NA	NA	NA	71850042	71850317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71850000_71850300
ES_00048741	chr6	+	554	2	FSM	ENSMUSG00000049553.12	ENSMUST00000206982.2	554	2	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAACCAACAGCCGTGCT	NA	False	NA	NA	False	CATAAA	-32	NA	71925344	71926738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71925484_71926323
ES_00048742	chr6	+	200	2	Intergenic	novelGene_3462	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1747	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTTATGTACATCTATG	NA	False	NA	NA	False	NA	NA	NA	72274671	72294135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_72274724_72293987
ES_00048743	chr6	+	5823	1	FSM	ENSMUSG00000058706.6	ENSMUST00000205578.2	3900	1	9	-1932	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8318	False	NA	15	True	AATAAA	-15	NA	72324308	72330131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72324300_72330100
ES_00048744	chr6	+	569	5	FSM	ENSMUSG00000053460.9	ENSMUST00000207000.2	569	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	18.5876302954411	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGTGGAGAACGGAAG	7818	False	NA	NA	False	ATTAAA	-2	NA	72403599	72406241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72403610_72404024_72404157_72405440_72405611_72405779_72405911_72406115
ES_00048746	chr6	+	802	3	Intergenic	novelGene_3468	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	14.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCTTTCATTATTTATA	NA	False	NA	NA	False	AATAAA	-23	NA	78818590	78847539	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_78818671_78833904_78833986_78846898
ES_00048747	chr6	+	4321	16	NIC	ENSMUSG00000035125.11	novel	3519	18	NA	NA	-1	0	intron_retention	FALSE	canonical	3	8	junction_4	15.8554582259724	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATGCTCACTTAATTT	NA	False	NA	NA	False	NA	NA	NA	81900648	81933934	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81910708_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921387_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811
ES_00048748	chr6	+	206	3	Genic_Genomic	ENSMUSG00000009145.7	novel	3257	12	NA	NA	-68991	73256	multi-exon	TRUE	non_canonical	0	0	junction_1	0	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAACAAAAAAACTAA	5290	False	NA	NA	False	NA	NA	NA	82965833	83117555	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_+_82965885_83043890_83044010_83117519
ES_00048749	chr6	+	1467	1	FSM	ENSMUSG00000107599.2	ENSMUST00000203285.2	1467	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCACGTGGGTGCTGA	8082	False	NA	NA	False	NA	NA	NA	82968625	82970092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_82968600_82970100
ES_00048750	chr6	+	607	2	FSM	ENSMUSG00000030041.10	ENSMUST00000204891.2	607	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGCAGGGCATCAGAAC	4489	False	NA	NA	False	AATAAA	-23	NA	83003318	83007290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83003386_83006750
ES_00048751	chr6	+	4104	14	FSM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	-6	0	-6	0	multi-exon	FALSE	canonical	2	3	junction_1	2.5903781908435	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCGCCCCCCAGCTACA	2223	False	NA	NA	False	AATAAA	-11	NA	83011147	83029543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83011271_83012435_83012779_83014409_83014574_83015375_83015591_83024968_83025189_83025558_83025740_83025849_83026005_83026164_83026333_83026464_83026628_83026754_83026999_83027096_83027213_83027288_83027426_83027538_83027651_83027780
ES_00048753	chr6	+	1826	10	FSM	ENSMUSG00000068328.11	ENSMUST00000204895.3	1826	10	0	0	0	0	multi-exon	TRUE	canonical	3	960	junction_8	79.6814646104672	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGCCTCTTTGGGTTT	5338	False	NA	13	True	ATTAAA	-23	NA	83031626	83034667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ES_00048755	chr6	+	1508	12	FSM	ENSMUSG00000068328.11	ENSMUST00000203915.4	1491	12	-17	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	313.3608012109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTCTGTTGCCTCT	5406	False	NA	5	True	ATTAAA	-15	NA	83031694	83034659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
ES_00048756	chr6	+	1437	12	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	319.899803528418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5422	False	NA	9	True	ATTAAA	-19	NA	83031710	83034663	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033419_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ES_00048762	chr6	+	2295	9	FSM	ENSMUSG00000107499.2	ENSMUST00000101254.9	2317	9	22	0	22	0	multi-exon	FALSE	canonical	2	2	junction_2	3.53553390593274	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCAGATCATGCCCCAGA	239	False	NA	NA	False	NA	NA	NA	83078603	83085375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83079620_83079938_83080026_83080100_83080251_83080382_83080514_83080592_83080707_83084033_83084149_83084435_83084614_83084735_83084936_83085071
ES_00048767	chr6	+	5127	25	FSM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	-4	0	-4	0	multi-exon	FALSE	canonical	0	0	junction_1	237.48204610501	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCCATGTCTAATAACTGA	6753	False	NA	24	True	AATAAA	-25	NA	83214352	83281926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83214745_83217591_83217722_83237416_83237578_83238392_83238546_83239454_83239551_83240497_83240554_83241244_83241403_83242654_83242743_83244387_83244543_83245175_83245365_83247904_83248080_83249026_83249161_83250031_83250304_83254494_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ES_00048768	chr6	+	1814	11	ISM	ENSMUSG00000068323.13	ENSMUST00000113899.8	5039	24	40021	1187	3	282	3prime_fragment	FALSE	canonical	3	17	junction_9	149.627704653918	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCAAGTGGCCAGTGGTG	5729	False	NA	13	True	AATAAA	-23	NA	83254377	83280740	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83277452_83277521_83280307
ES_00048769	chr6	+	2387	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	2	685	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCTCTGAGTGGATT	5728	False	NA	8	True	NA	NA	NA	83254376	83281143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
ES_00048771	chr6	+	1347	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	-24	0	22	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9280	False	NA	11	True	AATAAA	-19	NA	83771985	83779536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ES_00048775	chr6	+	6449	28	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	88.3838430014429	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACACTGTTGTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	83891352	83963850	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891472_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ES_00048776	chr6	+	6202	25	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	72.2910782877113	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891335	83963851	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ES_00048777	chr6	+	4236	25	NIC	ENSMUSG00000030016.15	novel	4366	26	NA	NA	12	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_22	82.4636283460775	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAACACTGTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	83891390	83963848	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83960957_83961057_83961758_83961878_83963539
ES_00048778	chr6	+	6248	26	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	77.5262123413752	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACACTGTTGTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	83891390	83963850	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ES_00048779	chr6	+	596	1	FSM	ENSMUSG00000030016.15	ENSMUST00000203534.2	1502	1	588	318	586	-318	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGATTTAGTGGGCTCAA	NA	False	NA	NA	False	AATAAA	-45	NA	83891964	83892560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83892000_83892600
ES_00048780	chr6	+	3968	24	FSM	ENSMUSG00000030016.15	ENSMUST00000203891.3	3968	24	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_21	84.1844450831081	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	83905836	83963853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83960957_83961057_83961758_83961878_83963539
ES_00048781	chr6	+	5555	25	NIC	ENSMUSG00000030016.15	novel	9033	27	NA	NA	402	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_10	83.8008137722355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACACTGTTGTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	83906238	83963850	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ES_00048782	chr6	+	272	1	FSM	ENSMUSG00000098142.2	ENSMUST00000183053.2	1008	1	700	36	700	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCCTCATGGCCTACGT	NA	False	NA	NA	False	AATGAA	-22	NA	84789921	84790193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_84789900_84790200
ES_00048783	chr6	+	3588	1	FSM	ENSMUSG00000107278.2	ENSMUST00000202081.2	3588	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGGGCTTGTTCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	85656258	85659846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85656300_85659800
ES_00048784	chr6	+	1038	8	Fusion	ENSMUSG00000090256.2_ENSMUSG00000090098.8	novel	2166	9	NA	NA	-25635	9	multi-exon	TRUE	non_canonical	0	0	junction_7	19.1439232112534	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTCCCTGTGGGGTCTGG	NA	False	NA	NA	False	AATAAA	-24	NA	85725739	85781048	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_+_85725851_85726991_85727196_85727474_85727717_85728211_85728366_85729034_85729099_85732543_85732644_85733466_85733542_85780960
ES_00048785	chr6	+	2241	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	-19	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	2037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTTATTATGTC	3390	False	NA	24	True	NA	NA	NA	85892700	85907266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ES_00048787	chr6	+	2344	6	NIC	ENSMUSG00000054226.14	novel	818	5	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	78.5636048052786	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3494	False	NA	22	True	NA	NA	NA	85892804	85907264	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_85893090_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ES_00048788	chr6	+	4504	6	FSM	ENSMUSG00000029999.15	ENSMUST00000032066.13	4527	6	14	9	-14	-9	multi-exon	FALSE	canonical	2	3	junction_4	2.89827534923789	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCTAAATCTCAAGACTG	NA	False	NA	NA	False	AATGAA	-12	NA	86172218	86252692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86172528_86206412_86206467_86240140_86240259_86246911_86247062_86248361_86248472_86248929
ES_00048789	chr6	+	1614	4	NNC	ENSMUSG00000057497.9	novel	1643	3	NA	NA	26	25	at_least_one_novel_splicesite	FALSE	non_canonical	3	528	junction_3	602.699114170763	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGTAAATGGGAAACACCA	8643	False	NA	57	True	AATAAA	-41	NA	86342653	86347065	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86342802_86343591_86343733_86345712_86346151_86346178
ES_00048791	chr6	+	779	7	NIC	ENSMUSG00000071337.12	novel	823	8	NA	NA	-1	-65	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	55.5230182496913	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAAATGTGTTTGTGT	9757	False	NA	NA	False	TATAAA	-36	NA	86381276	86400766	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587
ES_00048793	chr6	+	989	2	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1453	False	NA	NA	False	ATTAAA	-1	NA	86415355	86416470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86415466_86415591
ES_00048794	chr6	+	2630	11	FSM	ENSMUSG00000046679.17	ENSMUST00000141972.8	2630	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	10.36532681588	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1771	False	NA	NA	False	AATAAA	-26	NA	86415673	86447370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86431241_86431296_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ES_00048796	chr6	+	1022	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	347	178	347	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCACAATCCAGATGCTTG	NA	False	NA	NA	False	NA	NA	NA	86605492	86606514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86605500_86606500
ES_00048797	chr6	+	9992	17	NIC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	8.0156097709407	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGTTGTGTGTTTTTTCT	NA	False	NA	9	True	ATTAAA	-19	NA	86826513	86980209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_86826634_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940974_86941208_86942458_86942617_86944250_86944356_86972821
ES_00048799	chr6	+	1069	1	FSM	ENSMUSG00000108152.2	ENSMUST00000205007.2	1691	1	-20	642	-20	-642	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGGTTTGCGGGAGCTT	1206	False	NA	NA	False	NA	NA	NA	86850747	86851816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86850700_86851800
ES_00048800	chr6	+	902	8	FSM	ENSMUSG00000029993.17	ENSMUST00000032060.15	948	8	53	-7	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1005.23440255576	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986870	87005443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ES_00048801	chr6	+	272	1	FSM	ENSMUSG00000029993.17	ENSMUST00000205018.2	2508	1	403	1833	280	-1833	mono-exon	FALSE	NA	NA	NA	NA	NA	243	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCCCTTCAGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	86987264	86987536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86987300_86987500
ES_00048802	chr6	+	2621	1	FSM	ENSMUSG00000029992.15	ENSMUST00000204872.2	2809	1	160	28	119	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAGAGAAGCCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	87019991	87022612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_87020000_87022600
ES_00048803	chr6	+	688	5	FSM	ENSMUSG00000030058.18	ENSMUST00000205234.3	742	5	54	0	54	0	multi-exon	FALSE	canonical	3	825	junction_4	32.3293597214668	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGGCCCAAGACCAAC	NA	False	NA	NA	False	NA	NA	NA	87870978	87879336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179
ES_00048807	chr6	+	1431	2	FSM	ENSMUSG00000084950.8	ENSMUST00000134600.2	1434	2	0	3	0	-3	multi-exon	FALSE	canonical	2	4	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGTTATACTTTAAGC	NA	False	NA	NA	False	NA	NA	NA	87957864	87961159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_87958078_87959941
ES_00048808	chr6	+	3135	6	FSM	ENSMUSG00000015053.15	ENSMUST00000170089.8	3135	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	57.164324538999	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCCTGTTGAGTGG	NA	False	NA	14	True	AATAAA	-15	NA	88170872	88184014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_88170983_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
ES_00048810	chr6	+	1525	1	Intergenic	novelGene_3485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACGTGAAATACTTTTTA	NA	False	NA	NA	False	NA	NA	NA	88546867	88548392	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_88546900_88548400
ES_00048811	chr6	+	1233	1	Intergenic	novelGene_3486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCAGGTCCCTGTTCGG	NA	False	NA	NA	False	NA	NA	NA	88548853	88550086	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_88548900_88550100
ES_00048812	chr6	+	3866	8	FSM	ENSMUSG00000033174.18	ENSMUST00000089449.5	3867	8	-1	2	-1	-2	multi-exon	FALSE	canonical	2	4	junction_1	4.18939379960434	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCCTGTGTCTGCGTGTC	NA	False	NA	3	True	AATAAA	-18	NA	88701808	88805340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
ES_00048813	chr6	+	2657	1	FSM	ENSMUSG00000107432.2	ENSMUST00000204113.2	523	1	-1325	-809	-1325	809	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGCTGGTCTCAGAAC	NA	False	NA	NA	False	NA	NA	NA	88858311	88860968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_88858300_88861000
ES_00048814	chr6	+	3359	8	FSM	ENSMUSG00000002871.15	ENSMUST00000203345.3	3359	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	49.433112921009	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879434	88889213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_88879513_88882930_88883061_88883519_88883695_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662
ES_00048816	chr6	+	1363	10	NIC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	16	-2	combination_of_known_junctions	TRUE	canonical	3	11	junction_2	32.5474013299577	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAGGTGTGAGCTGATGC	NA	False	NA	10	True	AATAAA	-12	NA	88882972	88889211	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_88883061_88884922_88885055_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
ES_00048817	chr6	+	501	1	FSM	ENSMUSG00000108221.2	ENSMUST00000203134.2	307	1	2	-196	2	196	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGATAACTTTTCTTAT	NA	False	NA	NA	False	AATATA	-23	NA	89178236	89178737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_89178200_89178700
ES_00048818	chr6	+	835	1	FSM	ENSMUSG00000062818.8	ENSMUST00000072859.6	2567	1	2003	-271	2003	271	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAATATAAGTCACTCT	NA	False	NA	NA	False	NA	NA	NA	90107408	90108243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90107400_90108200
ES_00048819	chr6	+	2551	1	FSM	ENSMUSG00000108181.2	ENSMUST00000203368.2	2551	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGCCCATTGAATA	401	False	NA	NA	False	AGTAAA	-16	NA	90363788	90366339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90363800_90366300
ES_00048823	chr6	+	750	3	FSM	ENSMUSG00000034192.6	ENSMUST00000126253.2	520	3	-6	-224	-6	224	multi-exon	FALSE	canonical	3	1484	junction_1	469.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTATGTCTGTGTACC	NA	False	NA	NA	False	NA	NA	NA	91492932	91497041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_91493061_91494029_91494141_91496530
ES_00048824	chr6	+	390	3	FSM	ENSMUSG00000030096.9	ENSMUST00000205443.2	374	3	-16	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	166.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTTTCTGCATCTGGA	NA	False	NA	NA	False	NA	NA	NA	91661033	91712161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_91661290_91675969_91676014_91712071
ES_00048826	chr6	+	2076	10	FSM	ENSMUSG00000045100.12	ENSMUST00000204235.3	2076	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	16.6229055118027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477349	94581653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94490785_94491023_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ES_00048828	chr6	+	4499	9	NNC	ENSMUSG00000035158.16	novel	2113	10	NA	NA	16166	-4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_5	19.3612854686872	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACATTGTGTTGACCAGT	4201	False	NA	1	True	ATTAAA	-12	NA	97934044	97998306	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_97934147_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983083_97983159_97987355_97987432_97990629_97990778_97994734
ES_00048829	chr6	+	438	1	FSM	ENSMUSG00000079224.6	ENSMUST00000121217.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGTGGATCTCAAACTT	NA	False	NA	NA	False	NA	NA	NA	100581643	100582081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_100581600_100582100
ES_00048830	chr6	+	361	2	FSM	ENSMUSG00000013736.17	ENSMUST00000147084.2	357	2	-4	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAACTTTTCTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	106746126	106747125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_106746153_106746790
ES_00048832	chr6	+	9811	60	NIC	ENSMUSG00000030102.12	novel	9870	62	NA	NA	0	6	combination_of_known_junctions	TRUE	canonical	0	0	junction_26	16.630547859026	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTGGTGGCTTTCA	NA	False	NA	10	True	AATAAA	-21	NA	108190056	108528076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365300_108366327_108366516_108368791_108368931_108369491_108369551_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108409606_108409658_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ES_00048833	chr6	+	9623	59	NIC	ENSMUSG00000030102.12	novel	9870	62	NA	NA	58	6	combination_of_known_junctions	FALSE	canonical	0	0	junction_26	15.3465709974349	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTGGTGGCTTTCA	NA	False	NA	10	True	AATAAA	-21	NA	108190220	108528076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365327_108366327_108366516_108368791_108368931_108369491_108369551_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ES_00048834	chr6	+	442	4	FSM	ENSMUSG00000030102.12	ENSMUST00000203687.2	454	4	12	0	12	0	multi-exon	FALSE	canonical	2	16	junction_1	27.8208554864871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGCCATCGCACTTCT	8115	False	NA	NA	False	AATGAA	-35	NA	108394849	108417603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_108394962_108409606_108409658_108415260_108415394_108417457
ES_00048837	chr6	+	1236	1	FSM	ENSMUSG00000029633.10	ENSMUST00000121490.2	1236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTGTCACTCACTGC	NA	False	NA	NA	False	NA	NA	NA	112582504	112583740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_112582500_112583700
ES_00048838	chr6	+	6755	22	FSM	ENSMUSG00000034269.13	ENSMUST00000042889.12	6755	22	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	22.3513482018403	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAACAATGTGTTTGTTC	7843	False	NA	23	True	NA	NA	NA	113054325	113130396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113054674_113081895_113082083_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00048839	chr6	+	7045	24	NIC	ENSMUSG00000034269.13	novel	6755	22	NA	NA	16	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	26.8730123017523	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAATCATCATAATGTT	7859	False	NA	7	True	NA	NA	NA	113054341	113130380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113054674_113081895_113082083_113082625_113082723_113082877_113083103_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00048840	chr6	+	7044	24	NNC	ENSMUSG00000034269.13	novel	6527	22	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	24.1834513556419	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAATCATCATAATGTT	7861	False	NA	7	True	NA	NA	NA	113054343	113130380	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086845_113086952_113087277_113087487_113087590_113087632_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00048841	chr6	+	2429	19	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_17	81.7724183026387	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGGCTTTTCATTAGCA	1976	False	NA	11	True	AATAAA	-12	NA	113214811	113258155	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254791_113254907_113257563
ES_00048843	chr6	+	202	2	Antisense	novelGene_ENSMUSG00000107812.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGACTTAAAGAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	113233345	113309972	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_113233372_113309796
ES_00048845	chr6	+	4603	14	FSM	ENSMUSG00000001632.17	ENSMUST00000113121.8	4603	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	53.3804032920444	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAGAATGGAG	287	False	NA	NA	False	NA	NA	NA	113284152	113301682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ES_00048846	chr6	+	4799	13	NIC	ENSMUSG00000001632.17	novel	4540	13	NA	NA	5	0	intron_retention	FALSE	canonical	3	111	junction_6	28.8800200061488	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTCTATTTAGAATTCT	292	False	NA	9	True	AATATA	-16	NA	113284157	113301802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
ES_00048848	chr6	+	4319	14	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	39.0967545074748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAAGAATGGAGCTT	321	False	NA	NA	False	NA	NA	NA	113284186	113301685	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ES_00048852	chr6	+	1107	7	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	170	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	89.2070002235749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2617	False	NA	14	True	AATAAA	-23	NA	113304241	113311149	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113304324_113305325_113305441_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ES_00048853	chr6	+	1142	6	FSM	ENSMUSG00000079426.14	ENSMUST00000204802.2	794	6	-348	0	29	0	multi-exon	FALSE	canonical	0	0	junction_1	512.714969549359	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACCGGGACAGACTTTT	NA	False	NA	-15	True	NA	NA	NA	113355182	113365976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113355582_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ES_00048854	chr6	+	3541	11	ISM	ENSMUSG00000030276.20	ENSMUST00000203524.3	2745	13	-91	21	-91	0	intron_retention	FALSE	canonical	3	13	junction_6	3.96106046406767	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113370029	113391523	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749
ES_00048855	chr6	+	2415	9	FSM	ENSMUSG00000030276.20	ENSMUST00000203925.2	2517	9	102	0	102	0	multi-exon	FALSE	canonical	1	2	junction_8	6.78232998312527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113374820	113391523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749_113390021_113390823
ES_00048856	chr6	+	3189	1	FSM	ENSMUSG00000107944.2	ENSMUST00000204498.2	3111	1	-95	17	-95	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCGAGAAGACTGTCGTT	265	False	NA	NA	False	AATAAA	-3	NA	113393337	113396526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113393300_113396500
ES_00048858	chr6	+	2300	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	74	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	8.17117899020487	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5830	False	NA	6	True	AATAAA	-21	NA	113448461	113460101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
ES_00048859	chr6	+	889	2	FSM	ENSMUSG00000030284.12	ENSMUST00000129125.2	889	2	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAAAGCTTCAGTCTTA	NA	False	NA	10	True	AATAAA	-16	NA	113468979	113470296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113469220_113469647
ES_00048860	chr6	+	3183	13	FSM	ENSMUSG00000060477.15	ENSMUST00000059286.14	3196	13	13	0	-8	0	multi-exon	FALSE	canonical	2	5	junction_1	6.70820393249937	542	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGGGTGAATTT	NA	False	NA	26	True	AATAAA	-31	NA	113615440	113671987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113615603_113624599_113624783_113642663_113642808_113647159_113647255_113649699_113649901_113649983_113650049_113652591_113652707_113653547_113653658_113655607_113655804_113659693_113659757_113663718_113663920_113667743_113668033_113670628
ES_00048861	chr6	+	1005	1	FSM	ENSMUSG00000108137.2	ENSMUST00000203364.2	929	1	-95	19	-95	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTAAAGTCCTTAG	4192	False	NA	NA	False	NA	NA	NA	113702088	113703093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113702100_113703100
ES_00048863	chr6	+	2565	21	FSM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	-22	0	-5	0	multi-exon	FALSE	canonical	3	8	junction_1	41.8782759912583	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620067	114836185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_114620112_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ES_00048866	chr6	+	2029	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-17	26	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCACCCTTGAAGAACT	NA	False	NA	NA	False	GGGGCT	-29	NA	115521645	115555615	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ES_00048869	chr6	+	229	1	FSM	ENSMUSG00000107994.2	ENSMUST00000203121.2	1142	1	915	-2	915	2	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGCCCACCGTAAACTGA	NA	False	NA	NA	False	ATTAAA	-14	NA	115653870	115654099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_115653900_115654100
ES_00048870	chr6	+	362	1	Intergenic	novelGene_3509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCACCTGTATACTGTA	9493	False	NA	NA	False	NA	NA	NA	115802440	115802802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_115802400_115802800
ES_00048871	chr6	+	2869	25	FSM	ENSMUSG00000024104.12	ENSMUST00000204476.3	2861	25	-8	0	0	0	multi-exon	TRUE	canonical	3	278	junction_14	32.2597691921894	2374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGACCACCCTGTTTC	NA	False	NA	NA	False	AAAAAG	-9	NA	116184998	116232033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009
ES_00048875	chr6	+	4203	29	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	101	junction_25	57.5563942616992	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185097	116239626	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ES_00048876	chr6	+	5015	28	FSM	ENSMUSG00000024104.12	ENSMUST00000203802.3	4946	28	-69	0	0	0	multi-exon	FALSE	canonical	3	196	junction_24	51.8204402209336	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185097	116239626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ES_00048879	chr6	+	2029	7	NIC	ENSMUSG00000042213.18	novel	3087	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	5.31245915016974	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAGACTGCATTATTTTT	NA	False	NA	NA	False	NA	NA	NA	116241231	116306505	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_116241274_116250533_116250834_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
ES_00048884	chr6	+	781	2	Intergenic	novelGene_3513	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTACATTTTCTTC	NA	False	NA	4	True	NA	NA	NA	117856953	117861556	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_117857120_117860941
ES_00048885	chr6	+	2401	3	FSM	ENSMUSG00000042079.14	ENSMUST00000163168.9	2401	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	255	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3788	False	NA	NA	False	AATAAA	-14	NA	117883809	117902580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117884170_117894430_117894560_117900668
ES_00048887	chr6	+	3406	12	NIC	ENSMUSG00000030134.12	novel	2227	13	NA	NA	0	-4	intron_retention	FALSE	canonical	3	24	junction_10	5.7653854529847	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCCCTTGTCTCTCTCT	NA	False	NA	-1	True	NA	NA	NA	118043379	118068503	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066469_118066776
ES_00048890	chr6	+	365	1	Intergenic	novelGene_3523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTATCC	NA	False	NA	NA	False	NA	NA	NA	120328227	120328592	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120328200_120328600
ES_00048893	chr6	+	9261	18	NIC	ENSMUSG00000071226.12	novel	9212	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	30.8887948463326	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCTTTCGTGTATGTG	NA	False	NA	4	True	TATAAA	-17	NA	120643329	120748151	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738104_120739519_120742232_120742345_120743372
ES_00048897	chr6	+	1680	7	FSM	ENSMUSG00000067825.12	ENSMUST00000125633.2	1760	7	-9	89	0	-89	multi-exon	FALSE	canonical	1	1	junction_5	20.0388511535855	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCACCTTTACCACCTC	NA	False	NA	NA	False	NA	NA	NA	121160847	121175707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170470_121170707_121174840_121174974_121175586
ES_00048898	chr6	+	730	5	NNC	ENSMUSG00000012396.13	novel	2011	5	NA	NA	-14	-1466	at_least_one_novel_splicesite	FALSE	canonical	3	1086	junction_1	1448.71328685147	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATCCATTGCAGCTATC	NA	False	NA	NA	False	NA	NA	NA	122684433	122690126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_122684568_122684675_122684893_122688496_122688763_122689587_122689675_122690100
ES_00048902	chr6	+	2337	12	FSM	ENSMUSG00000004270.14	ENSMUST00000135516.8	2373	12	36	0	36	0	multi-exon	FALSE	canonical	3	738	junction_2	60.4457273131296	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAAAACGAAA	NA	False	NA	NA	False	AAAACA	-10	NA	124640025	124681333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ES_00048903	chr6	+	1427	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	902.100985200659	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689189	124693913	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692998_124693566
ES_00048905	chr6	+	1312	9	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	902.100985200659	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ES_00048906	chr6	+	2373	8	FSM	ENSMUSG00000004264.18	ENSMUST00000145447.8	2373	8	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_7	631.805091360768	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691923_124692022_124692127_124692544_124692623_124692916_124693394_124693568
ES_00048910	chr6	+	3519	12	NIC	ENSMUSG00000038346.19	novel	3132	11	NA	NA	-107	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	63.0599871826111	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCAGTGAGCTACTGTGT	NA	False	NA	7	True	AATAAA	-18	NA	124986000	125014832	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125008633_125008817_125010202_125010282_125012675_125012835_125013268
ES_00048911	chr6	+	2451	9	FSM	ENSMUSG00000038346.19	ENSMUST00000054553.11	2451	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	73.7757370346105	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATATTGATGTTTTAT	NA	False	NA	6	True	TATAAA	-18	NA	124986141	125014600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001825_125002046_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ES_00048912	chr6	+	2813	11	FSM	ENSMUSG00000038346.19	ENSMUST00000084275.12	2829	11	16	0	16	0	multi-exon	FALSE	canonical	3	8	junction_1	63.4417055256241	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATATTGATGTTTTAT	NA	False	NA	6	True	TATAAA	-18	NA	124986783	125014600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_124986865_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125008633_125008817_125010202_125010282_125012675_125012835_125013268
ES_00048915	chr6	+	1723	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	18	2319	18	-2319	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGGGACTCAGAATTTTGT	7134	False	NA	-78	True	NA	NA	NA	125016825	125026143	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
ES_00048919	chr6	+	6510	39	NNC	ENSMUSG00000063870.13	novel	6697	39	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_38	128.258892441439	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1789	False	NA	8	True	AATAAA	-12	NA	125073124	125107548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097170_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105954_125106782
ES_00048920	chr6	+	6496	39	NIC	ENSMUSG00000063870.13	novel	6537	39	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_3	119.03378323504	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1791	False	NA	14	True	AATAAA	-18	NA	125073126	125107554	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079433_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ES_00048922	chr6	+	292	1	NIC	ENSMUSG00000108129.3	novel	3458	4	NA	NA	3013	-1881	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGCCTCTTAGAAGTGC	3630	False	NA	NA	False	NA	NA	NA	125245594	125245886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_125245600_125245900
ES_00048924	chr6	+	212	1	Intergenic	novelGene_3544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGATATAATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	125376305	125376517	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125376300_125376500
ES_00048925	chr6	+	238	1	Intergenic	novelGene_3545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTTAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-8	NA	125378935	125379173	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125378900_125379200
ES_00048926	chr6	+	777	5	Intergenic	novelGene_3550	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	35	junction_3	59.9437236080643	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTCTGGTGATTTTCTGT	NA	False	NA	4	True	AATAAA	-18	NA	125409657	125435802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125409775_125409999_125410201_125415223_125415345_125434610_125434718_125435571
ES_00048928	chr6	+	3228	22	ISM	ENSMUSG00000001930.18	ENSMUST00000112254.8	8834	52	93304	44	-87	0	3prime_fragment	FALSE	canonical	3	5	junction_13	5.41518818126838	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCTGGGCCCACAATAA	NA	False	NA	-34	True	NA	NA	NA	125623214	125663598	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_125623360_125624707_125624873_125625744_125625789_125626079_125626258_125631994_125632216_125633578_125633772_125633962_125634305_125635678_125635879_125639927_125640031_125640466_125640542_125642056_125642162_125643541_125643748_125644433_125644584_125650808_125650920_125654853_125655035_125655726_125655768_125656206_125656324_125659689_125659789_125660479_125660609_125661055_125661096_125662772_125662871_125663313
ES_00048931	chr6	+	2058	8	FSM	ENSMUSG00000030351.6	ENSMUST00000032501.6	5188	8	14	3116	14	-3116	multi-exon	FALSE	canonical	0	0	junction_2	0.349927106111883	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCATAGACAACCATAGGG	NA	False	NA	NA	False	ATTAAA	-14	NA	127864565	127927824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_127864842_127889912_127890008_127900514_127900707_127915163_127915239_127916056_127916162_127920179_127920339_127920669_127920757_127926755
ES_00048932	chr6	+	2651	1	FSM	ENSMUSG00000107810.2	ENSMUST00000203370.2	3601	1	-27	977	-27	-977	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGGGCACTGTCAG	NA	False	NA	NA	False	AAGAAA	-24	NA	128162212	128164863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_128162200_128164900
ES_00048933	chr6	+	1207	7	FSM	ENSMUSG00000001517.15	ENSMUST00000203040.3	1207	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	64.6127352427952	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGACCTGTTCTTCTCA	NA	False	NA	NA	False	NA	NA	NA	128343129	128350321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128348930_128348976_128349493_128349567_128349739
ES_00048935	chr6	+	907	5	FSM	ENSMUSG00000059659.8	ENSMUST00000204081.2	907	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	4.26468052730799	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATTGTTATTCACTT	NA	False	NA	NA	False	AATGAA	-14	NA	128416301	128480244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_128416351_128416477_128416660_128465853_128466007_128479128_128479327_128479919
ES_00048959	chr6	+	5003	28	NIC	ENSMUSG00000016487.16	novel	4782	28	NA	NA	7	0	combination_of_known_junctions	TRUE	canonical	1	49	junction_2	70.7910234325529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTATTTGTCATTG	7546	False	NA	11	True	AATAAA	-15	NA	146789991	146933521	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_146790182_146819245_146819407_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
ES_00048973	chr6	-	224	1	FSM	ENSMUSG00000106734.4	ENSMUST00000202514.2	1575	1	21	1330	-6	-1330	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAGTACAAAATTTCTTC	NA	False	NA	NA	False	AAGAAA	-13	NA	3346077	3345853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_3345900_3346100
ES_00048974	chr6	-	3334	1	FSM	ENSMUSG00000107881.2	ENSMUST00000203092.2	4229	1	121	774	121	-774	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTCTAAGATTAAGTG	574	False	NA	NA	False	NA	NA	NA	5220365	5217031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_5217000_5220400
ES_00048975	chr6	-	805	7	NIC	ENSMUSG00000029759.10	novel	1837	9	NA	NA	-152	-655	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	14.3459247020035	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAACTGTAATTATTTACA	1266	False	NA	NA	False	AGTAAA	-21	NA	5255018	5221506	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5246277_5246334_5254515_5254587_5254968
ES_00048979	chr6	-	358	1	FSM	ENSMUSG00000097900.2	ENSMUST00000181363.2	964	1	861	-255	861	255	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGTAGACCTTTTTAAC	5736	False	NA	NA	False	NA	NA	NA	6351406	6351048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_6351000_6351400
ES_00048982	chr6	-	1233	3	FSM	ENSMUSG00000029632.8	ENSMUST00000203801.2	1232	3	0	-1	0	0	multi-exon	FALSE	canonical	3	9446	junction_1	25.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	23	True	NA	-11	True	AATAAA	-15	NA	11907428	11900370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_11900591_11905200_11906108_11907322
ES_00048983	chr6	-	452	5	FSM	ENSMUSG00000029632.8	ENSMUST00000204714.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_4	3332.42722163591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGCGTGTCACTATTTA	NA	False	NA	-15	True	AATAAA	-11	NA	11907496	11900374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322_11907384_11907471
ES_00048984	chr6	-	3377	4	FSM	ENSMUSG00000029569.10	ENSMUST00000149123.3	3337	4	55	-95	-1	95	multi-exon	TRUE	canonical	3	13	junction_3	103.721850264167	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGAGCGTTCTTGAGGCT	-14	True	NA	NA	False	NA	NA	NA	13608044	13580590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13607828
ES_00048985	chr6	-	4010	6	NNC	ENSMUSG00000029569.10	novel	4587	5	NA	NA	0	-607	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	105.649230948455	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGCTTTTAGAGTTT	-13	True	NA	NA	False	ATTAAA	-19	NA	13608043	13581292	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13606997_13607084_13607828
ES_00048986	chr6	-	1076	1	FSM	ENSMUSG00000082289.2	ENSMUST00000121139.2	784	1	-109	-183	-109	183	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTCCACTGGGGGAAAT	NA	False	NA	NA	False	TATAAA	-34	NA	18157228	18156152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_18156200_18157200
ES_00048987	chr6	-	3954	19	FSM	ENSMUSG00000000416.17	ENSMUST00000152499.8	4391	19	428	9	428	-9	multi-exon	FALSE	canonical	2	5	junction_4	2.95438573340185	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTAGCAAAGTTATTTT	NA	False	NA	NA	False	AATAAA	-5	NA	18427802	18366485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_18367616_18374522_18374622_18375935_18376069_18378365_18378430_18380461_18380639_18380966_18381173_18382744_18382924_18388026_18388215_18389081_18389235_18397331_18397432_18397516_18397604_18405182_18405263_18406454_18406551_18408480_18408757_18414180_18414299_18420764_18421017_18423829_18423981_18426034_18426135_18427437
ES_00048989	chr6	-	2062	1	FSM	ENSMUSG00000106946.2	ENSMUST00000200848.2	2852	1	-10	800	-10	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACTTTCAGTTTGTCATT	4621	False	NA	NA	False	NA	NA	NA	24660378	24658316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24658300_24660400
ES_00048990	chr6	-	539	3	FSM	ENSMUSG00000029676.16	ENSMUST00000136089.2	2084	3	0	1545	0	245	multi-exon	FALSE	canonical	3	116	junction_2	7.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCAGCGTGATGTATTAT	10	True	NA	NA	False	NA	NA	NA	25809215	25800079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_25800510_25805873_25805941_25809173
ES_00048992	chr6	-	4311	6	FSM	ENSMUSG00000039841.15	ENSMUST00000115320.8	4311	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	17.2232401132888	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTATCTTTTTGTGCAT	15	True	NA	-1	True	ATTAAA	-23	NA	28261910	28239925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261376
ES_00048995	chr6	-	3991	23	FSM	ENSMUSG00000012535.15	ENSMUST00000115251.8	3989	23	0	-2	0	2	multi-exon	FALSE	canonical	3	17	junction_4	140.778774050425	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTTTTTATTTCCCTT	235	False	NA	0	True	TTTAAA	-7	NA	29609606	29540823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554980_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ES_00048998	chr6	-	2273	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	253.514963532123	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	2	True	NA	-18	True	ATTAAA	-16	NA	30509717	30482413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508842_30509683
ES_00049002	chr6	-	491	3	FSM	ENSMUSG00000029790.17	ENSMUST00000115130.3	485	3	0	-6	0	6	multi-exon	FALSE	canonical	2	5	junction_1	51	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGACATCTTAATTTAT	8	True	NA	NA	False	NA	NA	NA	30693699	30679080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30679444_30680129_30680194_30693635
ES_00049003	chr6	-	712	9	FSM	ENSMUSG00000025607.16	ENSMUST00000122833.8	695	9	-17	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_8	75.20794090387	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGTTTGCATACTGTAT	NA	False	NA	NA	False	NA	NA	NA	30873378	30835737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873301
ES_00049005	chr6	-	3674	1	FSM	ENSMUSG00000001642.19	ENSMUST00000201392.2	5024	1	-165	1515	-165	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTTTTGTGAATTTGG	5352	False	NA	-20	True	AATAAA	-1	NA	34284557	34280883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34280900_34284600
ES_00049006	chr6	-	217	1	FSM	ENSMUSG00000082118.2	ENSMUST00000121220.2	197	1	12	-32	12	32	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTTTAAAAAAAAAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	34787750	34787533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34787500_34787800
ES_00049007	chr6	-	1501	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115006.2	1501	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.9566858950296	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTGACGACTATTC	7648	False	NA	-20	True	NA	NA	NA	34854944	34850629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_34851631_34852390_34852548_34853473_34853707_34854834
ES_00049009	chr6	-	4434	7	ISM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	20	12411	-14	11830	5prime_fragment	FALSE	canonical	2	55	junction_4	9.69106117340442	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGCTTTGGCCGTGGTG	5796	False	NA	-7	True	NA	NA	NA	34887791	34869771	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
ES_00049012	chr6	-	3280	11	FSM	ENSMUSG00000038784.14	ENSMUST00000114989.9	3279	11	0	-1	0	0	multi-exon	FALSE	canonical	3	23	junction_1	65.3360543651053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGGGTGAGTCTTGTTC	7676	False	NA	-2	True	AATAAA	-20	NA	35110629	34998999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ES_00049013	chr6	-	409	3	FSM	ENSMUSG00000029840.9	ENSMUST00000201026.2	409	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	387.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGCGTGAAATTGCTT	4237	False	NA	NA	False	GATAAA	-44	NA	35516734	35498863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_35498919_35499616_35499731_35516494
ES_00049015	chr6	-	8812	21	NNC	ENSMUSG00000063455.17	novel	10968	20	NA	NA	0	65414	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.8325821357808	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGCAAACTTTAACT	NA	False	NA	NA	False	NA	NA	NA	38230944	38034694	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_38034880_38102451_38105511_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318_38174025_38230802
ES_00049016	chr6	-	6547	5	NNC	ENSMUSG00000047749.3	novel	6536	4	NA	NA	-29	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	62.1007246334534	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATAGTGATTTTCTTTTT	NA	False	NA	1	True	AATAAA	-22	NA	38276223	38264322	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_38268467_38268492_38270073_38271992_38272255_38274886_38275023_38275798
ES_00049017	chr6	-	3867	15	FSM	ENSMUSG00000061436.16	ENSMUST00000162359.8	3867	15	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	5.22601420681153	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATGTTAGTAACAAA	NA	False	NA	NA	False	AAAAAG	-20	NA	38852857	38674818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ES_00049018	chr6	-	1727	2	ISM	ENSMUSG00000061436.16	ENSMUST00000160360.2	3907	15	-140	120011	54	7	5prime_fragment	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTTTGTTTATGTAT	NA	False	NA	NA	False	NA	NA	NA	38853045	38794834	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_38796249_38852732
ES_00049022	chr6	-	1485	5	FSM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	1508.75983841034	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGAAATGTCTTCT	NA	False	NA	1	True	AATAAA	-22	NA	39397001	39377687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
ES_00049024	chr6	-	3865	18	NIC	ENSMUSG00000038456.10	novel	4468	19	NA	NA	34	-368	combination_of_known_splicesites	FALSE	canonical	3	24	junction_14	27.1251106227713	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTGTGTGCAGCAAAGG	NA	False	NA	NA	False	NA	NA	NA	39534767	39439679	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39483634_39483757_39485175_39485304_39499589_39500694_39534508
ES_00049025	chr6	-	9556	20	NNC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_17	9.65900610269849	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTATTTTTCTAGCAT	6442	False	NA	-3	True	AATAAA	-23	NA	39702396	39580167	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_39587339_39591065_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654389_39654505_39654576_39665177_39665280_39702040
ES_00049026	chr6	-	9730	22	FSM	ENSMUSG00000002413.16	ENSMUST00000002487.15	9728	22	1	-3	1	3	multi-exon	FALSE	canonical	1	1	junction_11	14.0953989694809	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTATTTTTCTAGCAT	6442	False	NA	-3	True	AATAAA	-23	NA	39702396	39580167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39587339_39591065_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39623658_39623779_39625383_39625421_39625754_39625791_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ES_00049029	chr6	-	471	2	FSM	ENSMUSG00000037172.15	ENSMUST00000200994.2	606	2	0	135	0	-135	multi-exon	FALSE	canonical	3	22	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCTTCCCAGCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	40413049	40400544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_40400758_40412791
ES_00049031	chr6	-	395	1	FSM	ENSMUSG00000107920.2	ENSMUST00000204795.2	781	1	416	-30	416	30	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTACAAAATTTTAAAAAG	NA	False	NA	NA	False	ACTAAA	-40	NA	43833422	43833027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_43833000_43833400
ES_00049032	chr6	-	1244	2	Genic_Genomic	ENSMUSG00000107853.2	novel	964	1	NA	NA	-46	354	multi-exon	FALSE	canonical	3	11	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCTAACTAAGACAAT	NA	False	NA	NA	False	AATAAA	-41	NA	47410069	47408705	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_47409736_47409855
ES_00049033	chr6	-	545	1	NIC	ENSMUSG00000052241.4	novel	543	2	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTCCCAACTGCACTG	NA	False	NA	NA	False	NA	NA	NA	47431254	47430709	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_47430700_47431300
ES_00049038	chr6	-	203	1	FSM	ENSMUSG00000065701.3	ENSMUST00000083767.3	112	1	3	-94	3	94	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTCGATTGTTCTCCTC	NA	False	NA	92	True	NA	NA	NA	47765111	47764908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47764900_47765100
ES_00049039	chr6	-	3974	6	NIC	ENSMUSG00000071477.11	novel	3111	6	NA	NA	273	2	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	38.9122088810183	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGTTTCCTGTTTGCTG	NA	False	NA	-1	True	AATAGA	-16	NA	48025572	48001136	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48024565
ES_00049041	chr6	-	2175	3	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	1	2172	multi-exon	FALSE	non_canonical	0	0	junction_1	220.5	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGGCTGGAAAAATGGC	NA	False	NA	NA	False	AATAAA	-25	NA	48502023	48499315	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_48500391_48500871_48501909_48501960
ES_00049042	chr6	-	1412	3	FSM	ENSMUSG00000047867.12	ENSMUST00000053661.7	1594	3	182	0	153	0	multi-exon	FALSE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGCCTCTTTGTGATT	4375	False	NA	NA	False	AATAAA	-21	NA	48684977	48678515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_48679758_48681355_48681441_48684892
ES_00049044	chr6	-	1781	8	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_2	153.460491492044	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4612	False	NA	-4	True	AATAAA	-15	NA	49240945	49220857	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221867_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ES_00049045	chr6	-	2090	9	FSM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	190.764866720788	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4612	False	NA	-4	True	AATAAA	-15	NA	49240945	49220857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229736_49230043_49240771
ES_00049046	chr6	-	2080	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_7	181.788983095786	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4613	False	NA	-8	True	AATAAA	-11	NA	49240944	49220861	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741_49230043_49240771
ES_00049047	chr6	-	2098	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTCTCTTTATTTGATA	4613	False	NA	-1	True	AATAAA	-18	NA	49240944	49220854	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
ES_00049048	chr6	-	2929	10	FSM	ENSMUSG00000029821.16	ENSMUST00000165099.8	2929	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.3397568623584	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGGGAAAAAAAAAAAAAAC	8780	False	NA	NA	False	NA	NA	NA	50238735	50166348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50167963_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
ES_00049049	chr6	-	2916	21	FSM	ENSMUSG00000029822.16	ENSMUST00000114466.8	2916	21	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_7	3.40404171537307	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTGTGGGTTACAA	NA	False	NA	NA	False	AATAAA	-15	NA	50347298	50273784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102
ES_00049050	chr6	-	595	2	FSM	ENSMUSG00000063694.6	ENSMUST00000077766.6	607	2	12	0	12	0	multi-exon	FALSE	canonical	3	5579	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGCCTTATTTATTA	NA	False	NA	NA	False	AAAAAG	-16	NA	50542917	50542216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50542366_50542471
ES_00049052	chr6	-	1578	2	FSM	ENSMUSG00000004980.17	ENSMUST00000204885.2	1554	2	0	-24	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51440164	51438100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51438414_51438899
ES_00049054	chr6	-	2056	3	FSM	ENSMUSG00000029844.10	ENSMUST00000120363.2	2043	3	0	-13	0	8	multi-exon	FALSE	canonical	2	5	junction_2	5.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGTGTATTTGGCTG	NA	False	NA	2	True	AATAAA	-27	NA	52135297	52132561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52134070_52134546_52134642_52134844
ES_00049055	chr6	-	1583	2	FSM	ENSMUSG00000000942.11	ENSMUST00000101395.3	1594	2	0	11	0	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGAGACAGATTTGTGT	7242	False	NA	NA	False	AATAAA	-25	NA	52168733	52166661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52167669_52168157
ES_00049056	chr6	-	279	2	Genic_Genomic	ENSMUSG00000059159.7	novel	213	1	NA	NA	0	24180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGACGGAATGAGCCTGGC	NA	False	NA	NA	False	NA	NA	NA	52323927	52299534	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_52299562_52323675
ES_00049059	chr6	-	2198	5	FSM	ENSMUSG00000063568.12	ENSMUST00000074541.6	2203	5	0	5	0	-5	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTAAAATAACCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	53045616	52745786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52747366_52754519_52754690_52789087_52789285_52870983_52871057_53045437
ES_00049062	chr6	-	1830	4	ISM	ENSMUSG00000003476.17	ENSMUST00000114374.9	1440	12	24354	-1165	7014	1	3prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCTTACGCATTTTTA	NA	False	NA	NA	False	NA	NA	NA	55070544	55067032	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_55068404_55069497_55069540_55069936_55070073_55070263
ES_00049063	chr6	-	1966	1	FSM	ENSMUSG00000055430.5	ENSMUST00000059539.5	1844	1	-125	3	-125	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTACCTGTACTGTCATC	NA	False	NA	-4	True	AATAAA	-17	NA	58884186	58882220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_58882200_58884200
ES_00049064	chr6	-	1134	6	FSM	ENSMUSG00000025889.14	ENSMUST00000163779.8	1188	6	44	10	44	-6	multi-exon	FALSE	canonical	2	3	junction_5	6.34350061086148	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAATCTTTCCTGG	6767	False	NA	-12	True	AATAAA	-14	NA	60806795	60708568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60806654
ES_00049065	chr6	-	1093	1	FSM	ENSMUSG00000107755.2	ENSMUST00000204513.2	1093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCAGAGATCAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	60748043	60746950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_60747000_60748000
ES_00049066	chr6	-	1162	4	FSM	ENSMUSG00000025889.14	ENSMUST00000203177.2	1407	4	0	245	0	-245	multi-exon	FALSE	canonical	3	17	junction_1	3.68178700572909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGTTTTGCATTTTT	7706	False	NA	NA	False	NA	NA	NA	60805856	60791919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_60792744_60795307_60795350_60804464_60804612_60805707
ES_00049067	chr6	-	212	2	Intergenic	novelGene_3458	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	64	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACAATTGCTTAGTTTT	NA	False	NA	NA	False	TTTAAA	-12	NA	67238087	67204540	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_67204701_67238035
ES_00049068	chr6	-	1771	1	FSM	ENSMUSG00000105776.2	ENSMUST00000199580.2	2449	1	422	256	422	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTGTACATCCCTGGG	NA	False	NA	NA	False	NA	NA	NA	70862364	70860593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_70860600_70862400
ES_00049069	chr6	-	4860	26	FSM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	0	-7	0	5	multi-exon	TRUE	canonical	3	176	junction_18	109.170809285266	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATTTCTTAGTGACTA	NA	False	NA	1	True	AATAAA	-23	NA	71609670	71565950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480
ES_00049071	chr6	-	803	5	NNC	ENSMUSG00000052962.4	novel	3721	4	NA	NA	0	83163	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	627.778374508074	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGCACGTGGTGGCGCA	NA	False	NA	NA	False	NA	NA	NA	71800794	71706817	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_71706844_71792924_71793272_71794588_71794734_71795652_71795843_71800699
ES_00049072	chr6	-	396	1	FSM	ENSMUSG00000108466.2	ENSMUST00000206975.2	626	1	40	190	40	-190	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGCTGCGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	71808654	71808258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71808300_71808700
ES_00049074	chr6	-	1444	1	FSM	ENSMUSG00000108681.2	ENSMUST00000206836.2	794	1	-72	-578	-72	578	mono-exon	FALSE	NA	NA	NA	NA	NA	488	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGATGGGCATGAGCAATG	NA	False	NA	NA	False	NA	NA	NA	71847061	71845617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_71845600_71847100
ES_00049075	chr6	-	2525	1	FSM	ENSMUSG00000055850.13	ENSMUST00000206319.2	2410	1	-117	2	104	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCGTGTGGTTCTGCTGT	8600	False	NA	NA	False	TATAAA	-13	NA	72339223	72336698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72336700_72339200
ES_00049076	chr6	-	789	5	FSM	ENSMUSG00000055850.13	ENSMUST00000129233.8	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	481.225194165892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAACTGATAAATTAAC	8450	False	NA	-38	True	NA	NA	NA	72339373	72337259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72337626_72337857_72337933_72338104_72338210_72338394_72338523_72339258
ES_00049077	chr6	-	793	4	NNC	ENSMUSG00000050732.10	novel	820	3	NA	NA	-206	10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	136.00081699101	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCTGTGTCTTTCAAGT	7887	False	NA	-8	True	AATAAA	-35	NA	72367892	72362195	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_72362637_72365244_72365404_72367456_72367598_72367840
ES_00049078	chr6	-	2819	10	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	26640	intron_retention	FALSE	non_canonical	0	0	junction_1	261.077870224551	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATACACTGCCTATTCTA	NA	False	NA	NA	False	NA	NA	NA	72416526	72383141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_72383169_72409778_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ES_00049079	chr6	-	2804	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416541	72409781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ES_00049080	chr6	-	1974	11	FSM	ENSMUSG00000056698.12	ENSMUST00000141833.8	2509	11	0	535	0	-535	multi-exon	FALSE	canonical	3	36	junction_10	7.7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTGAAACTCTAGCTC	NA	False	NA	NA	False	NA	NA	NA	72575378	72545067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
ES_00049082	chr6	-	3109	14	Fusion	ENSMUSG00000055799.14_ENSMUSG00000056429.5	novel	1888	13	NA	NA	0	-431	multi-exon	FALSE	non_canonical	0	0	junction_1	129.634671014332	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTGTAAAGAGATGTTGA	4823	False	NA	NA	False	AAAAAG	-5	NA	72766237	72585845	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_-_72585871_72603360_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72625783_72625826_72626102_72626187_72765193_72765322_72765544_72765609_72765692
ES_00049083	chr6	-	2598	11	NIC	ENSMUSG00000055799.14	novel	3042	12	NA	NA	58	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	122.761598230065	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTCTCTGGATGTTTCT	5183	False	NA	-8	True	AATAAA	-14	NA	72765877	72603360	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72765193_72765322_72765544_72765609_72765692
ES_00049085	chr6	-	1092	1	FSM	ENSMUSG00000055239.11	ENSMUST00000203004.2	3044	1	1973	-21	1973	21	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTGGCACACACCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	72824423	72823331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72823300_72824400
ES_00049087	chr6	-	506	4	NNC	ENSMUSG00000079523.9	novel	570	3	NA	NA	0	13257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12735.8096283232	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGCCAAGCTTAGGCAA	NA	False	NA	NA	False	NA	NA	NA	72935382	72921072	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_72921098_72934329_72934636_72934895_72935008_72935319
ES_00049088	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935285	72934335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72934636_72934895
ES_00049089	chr6	-	1245	2	Genic_Genomic	ENSMUSG00000107951.2	novel	1942	1	NA	NA	0	32186	multi-exon	FALSE	canonical	0	0	junction_1	0	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTATGTTCATCCATATAT	NA	False	NA	NA	False	NA	NA	NA	75275042	75240914	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_75240927_75273809
ES_00049090	chr6	-	491	1	FSM	ENSMUSG00000107951.2	ENSMUST00000204734.2	1942	1	1553	-102	1553	102	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTCATGCACACGTTGA	NA	False	NA	NA	False	AATAAA	-37	NA	75273489	75272998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_75273000_75273500
ES_00049091	chr6	-	452	1	FSM	ENSMUSG00000080824.2	ENSMUST00000121642.2	399	1	-24	-29	-24	29	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACATTTACAGTTGTGGG	NA	False	NA	NA	False	TATAAA	-12	NA	75759763	75759311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_75759300_75759800
ES_00049092	chr6	-	1215	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	0	519	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269.009293519759	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAAAGTCTGCATGTCAG	NA	False	NA	NA	False	ATTAAA	-28	NA	81942939	81938435	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_81938566_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ES_00049093	chr6	-	300	3	NNC	ENSMUSG00000109556.2	novel	323	3	NA	NA	-1048	-9	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTATAAGAGTTGCCT	NA	False	NA	-12	True	NA	NA	NA	82783112	82780758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_82780876_82781189_82781307_82783046
ES_00049094	chr6	-	690	1	FSM	ENSMUSG00000107401.2	ENSMUST00000204060.2	1194	1	472	32	472	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCACTCAGGAATCTCGG	NA	False	NA	NA	False	ATTAAA	-45	NA	82865218	82864528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_82864500_82865200
ES_00049095	chr6	-	1210	9	NNC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	13	52474	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	180.723545781948	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGACTCTGAGGAACGGGTT	2444	False	NA	NA	False	NA	NA	NA	83031005	82975772	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_82975812_83028253_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ES_00049096	chr6	-	1698	5	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	11.7686022959398	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010417	83007914	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_83009042_83009285_83009397_83009515_83009610_83009747_83010048_83010351
ES_00049097	chr6	-	1605	7	FSM	ENSMUSG00000068329.13	ENSMUST00000122955.8	1605	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	204.724543933767	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACAGTCAAAAGTGGGG	1897	False	NA	-12	True	AATAAA	-17	NA	83031552	83028260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ES_00049099	chr6	-	1236	3	FSM	ENSMUSG00000068327.6	ENSMUST00000089641.6	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	3	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAACCCCGCTGA	7176	False	NA	NA	False	NA	NA	NA	83047274	83045571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83045956_83046034_83046273_83046660
ES_00049100	chr6	-	1903	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	0	-1	0	0	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
ES_00049103	chr6	-	7289	1	ISM	ENSMUSG00000034832.16	ENSMUST00000089622.11	10904	11	72014	0	71971	0	mono-exon	FALSE	NA	NA	NA	NA	NA	243	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGTAAGCTTTTTTTT	NA	False	NA	2	True	AATAAA	-27	NA	83346643	83339354	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_83339400_83346600
ES_00049104	chr6	-	936	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	1	5	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCGTTTATTTCAGGAT	NA	False	NA	2	True	AATAAA	-28	NA	83483888	83457193	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
ES_00049105	chr6	-	2705	1	FSM	ENSMUSG00000108484.2	ENSMUST00000206215.2	1503	1	-1124	-78	-1104	78	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTTACTCTTTTAAAA	8692	False	NA	NA	False	TTTAAA	-4	NA	83528467	83525762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83525800_83528500
ES_00049106	chr6	-	327	1	FSM	ENSMUSG00000108609.2	ENSMUST00000206919.2	902	1	621	-46	621	46	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGCAGCAAAAAGAAGAAG	NA	False	NA	NA	False	AATAAA	-10	NA	83578069	83577742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83577700_83578100
ES_00049107	chr6	-	330	1	FSM	ENSMUSG00000099354.7	ENSMUST00000190077.2	1110	1	-66	846	-66	-846	mono-exon	FALSE	NA	NA	NA	NA	NA	405	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGTCACACAGGTTGCCC	NA	False	NA	NA	False	ACTAAA	-42	NA	83739913	83739583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83739600_83739900
ES_00049109	chr6	-	649	4	FSM	ENSMUSG00000045896.15	ENSMUST00000145593.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.98887651569859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTTAGAAGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	83808695	83786693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83787058_83791703_83791852_83808252_83808311_83808616
ES_00049110	chr6	-	620	1	Intergenic	novelGene_3474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83893726	83893106	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_83893100_83893700
ES_00049112	chr6	-	465	8	FSM	ENSMUSG00000033720.13	ENSMUST00000148179.8	849	8	0	384	0	-384	multi-exon	TRUE	canonical	2	3	junction_2	2.12852348939305	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGCCGCTGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	85310388	85246079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85246137_85246891_85246946_85264031_85264058_85266158_85266214_85266743_85266771_85276521_85276600_85296503_85296573_85310289
ES_00049113	chr6	-	459	4	FSM	ENSMUSG00000033720.13	ENSMUST00000113788.2	514	4	0	55	0	-53	multi-exon	FALSE	canonical	1	2	junction_1	3.2659863237109	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCATTTCAGTTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	85310404	85276119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85276317_85276521_85276600_85296503_85296573_85310289
ES_00049114	chr6	-	502	6	FSM	ENSMUSG00000030002.16	ENSMUST00000156821.8	497	6	0	-5	0	0	multi-exon	FALSE	canonical	2	2	junction_5	108.63332821929	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGCCTAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	85930924	85926691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85930818
ES_00049115	chr6	-	620	4	FSM	ENSMUSG00000030002.16	ENSMUST00000139164.2	620	4	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_2	12.8322510366134	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAACGTCATGTCAGAAA	NA	False	NA	NA	False	NA	NA	NA	85930808	85927019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85927076_85927495_85927543_85929286_85929348_85930352
ES_00049116	chr6	-	1750	2	Genic_Genomic	ENSMUSG00000051695.7	novel	1830	1	NA	NA	104	9751	multi-exon	FALSE	non_canonical	0	0	junction_1	0	152	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	86503199	86491722	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_86491749_86501475
ES_00049117	chr6	-	1342	1	FSM	ENSMUSG00000001157.14	ENSMUST00000203741.2	2750	1	1377	31	1377	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTGATGTATGAATATAA	NA	False	NA	NA	False	AAAAAG	-1	NA	86692498	86691156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86691200_86692500
ES_00049118	chr6	-	1939	12	FSM	ENSMUSG00000029994.18	ENSMUST00000113675.8	2030	12	91	0	5	0	multi-exon	FALSE	canonical	3	139	junction_5	17.9903555429564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATTCTTTCTCTGATT	389	False	NA	-1	True	ATTAAA	-19	NA	86742801	86713821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743
ES_00049121	chr6	-	1984	10	NIC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	8	4	intron_retention	FALSE	canonical	3	41	junction_3	13.2030673577893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTTCTGCCCTGAGGTC	NA	False	NA	-3	True	AATAAA	-24	NA	87649167	87606721	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ES_00049122	chr6	-	1092	6	NNC	ENSMUSG00000030051.11	novel	3588	6	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	32.6680271825527	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAACTTTTGTGTCTCTTA	NA	False	NA	NA	False	CATAAA	-14	NA	87649159	87628075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_87628272_87630689_87630875_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ES_00049123	chr6	-	1232	7	NNC	ENSMUSG00000030051.11	novel	3588	6	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	23.0072452356499	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTTTTGTGTCTCTT	NA	False	NA	NA	False	CATAAA	-13	NA	87649167	87628076	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_87628272_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ES_00049124	chr6	-	1637	7	FSM	ENSMUSG00000089997.3	ENSMUST00000162547.3	1637	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.372677996249965	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTCTGTGTGTCTGGCCT	NA	False	NA	NA	False	AATACA	-20	NA	87675430	87652571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87652879_87656808_87656966_87657132_87657254_87658085_87658251_87667529_87667828_87671707_87671903_87675036
ES_00049125	chr6	-	1883	1	FSM	ENSMUSG00000108042.2	ENSMUST00000205226.2	2593	1	-67	777	-67	-777	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGCAATTGGGCTGTGC	1911	False	NA	NA	False	NA	NA	NA	87809915	87808032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87808000_87809900
ES_00049126	chr6	-	414	1	FSM	ENSMUSG00000068689.9	ENSMUST00000161787.3	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAGGGTTAATAAATTG	NA	False	NA	NA	False	NA	NA	NA	87925859	87925445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87925400_87925900
ES_00049127	chr6	-	391	1	FSM	ENSMUSG00000108268.2	ENSMUST00000204735.2	1929	1	1446	92	1446	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAGTCTTAGCAGTTGGC	2860	False	NA	NA	False	ATTAAA	-34	NA	88018003	88017612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88017600_88018000
ES_00049128	chr6	-	935	5	FSM	ENSMUSG00000030082.15	ENSMUST00000130918.8	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	957	junction_4	50.4548065103811	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACTCGGTGGGAAAG	9227	False	NA	NA	False	NA	NA	NA	88495755	88490792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ES_00049130	chr6	-	2864	2	Intergenic	novelGene_3487	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTAGGTGTTGTTGT	NA	False	NA	2	True	NA	NA	NA	88670567	88644026	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_88646658_88670334
ES_00049131	chr6	-	1774	12	FSM	ENSMUSG00000030083.12	ENSMUST00000203137.3	1774	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	157.288543608278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGGGACCTGAGCCTG	6970	False	NA	-14	True	AATAAA	-11	NA	88818876	88812905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88813435_88813506_88813708_88815099_88815248_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
ES_00049133	chr6	-	2030	8	FSM	ENSMUSG00000033152.14	ENSMUST00000145944.3	2065	8	55	-20	0	-1	multi-exon	FALSE	canonical	2	3	junction_6	2.71804251292006	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCACGCCTGTTTTTTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	88851971	88819540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_88819959_88820488_88820669_88822047_88822110_88822514_88822672_88825716_88825792_88826176_88826971_88841998_88842272_88851900
ES_00049134	chr6	-	3273	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	729	junction_8	642.869366374089	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTGGTTCTGGTTTAAT	NA	False	NA	-2	True	AATAAA	-17	NA	88875659	88860454	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865991_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
ES_00049135	chr6	-	1158	1	FSM	ENSMUSG00000057697.3	ENSMUST00000076086.3	1122	1	67	-103	67	103	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATATCTCATGCAGTTT	NA	False	NA	NA	False	TATAAA	-19	NA	90201353	90200195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90200200_90201400
ES_00049136	chr6	-	6395	14	NIC	ENSMUSG00000034312.16	novel	6490	14	NA	NA	-150	0	intron_retention	FALSE	canonical	3	17	junction_13	8.16689811691508	2413	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTGTCCCCAGCCGCC	2697	False	NA	-8	True	AATAAA	-17	NA	90713819	90636579	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_90639938_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90713558
ES_00049138	chr6	-	7050	41	NNC	ENSMUSG00000030091.18	novel	7037	40	NA	NA	0	44738	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.0066888868837	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAACAAAAAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	91093801	90945311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_90945339_90990053_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
ES_00049139	chr6	-	3088	12	NNC	ENSMUSG00000030091.18	novel	7037	40	NA	NA	0	31549	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.100597887937	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGAAAGAATCATGCAG	NA	False	NA	NA	False	NA	NA	NA	91007240	90958500	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_90958532_90990049_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065
ES_00049140	chr6	-	7058	41	NNC	ENSMUSG00000030091.18	novel	7037	40	NA	NA	0	31549	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.0066888868837	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGAAAGAATCATGCAG	NA	False	NA	NA	False	NA	NA	NA	91093801	90958500	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_90958532_90990049_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
ES_00049141	chr6	-	369	4	FSM	ENSMUSG00000030091.18	ENSMUST00000123340.2	369	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	196.862049838629	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCAGGTGCTGTGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	90994411	90990298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90990390_90992805_90992890_90992967_90993064_90994313
ES_00049142	chr6	-	927	4	FSM	ENSMUSG00000030091.18	ENSMUST00000141952.8	799	4	-128	0	-128	0	multi-exon	FALSE	canonical	3	413	junction_2	22.6617641757114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGAGGTAAGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	91002616	90995726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90995970_90997124_90997272_90998378_90998503_91002203
ES_00049143	chr6	-	4347	13	FSM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_11	17.9830166793252	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGAGTTATATGAACGAG	462	False	NA	NA	False	AATGAA	-29	NA	91492777	91469254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_91469347_91469823_91469994_91470086_91470222_91473069_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
ES_00049144	chr6	-	2405	10	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-79	5439	10	-5439	5prime_fragment	FALSE	canonical	3	87	junction_8	18.5099239315189	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTGTAGAAGTGTTCC	383	False	NA	NA	False	AATAAA	-19	NA	91492856	91474693	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
ES_00049145	chr6	-	5239	12	NNC	ENSMUSG00000014550.15	novel	5334	12	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	35.6024885377784	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGACTTGTGTGTGCT	NA	False	NA	-7	True	ATTAAA	-44	NA	92191825	92163700	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178609_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
ES_00049147	chr6	-	8278	8	FSM	ENSMUSG00000030020.14	ENSMUST00000113445.2	3708	8	-144	-4426	-144	-48	multi-exon	FALSE	canonical	3	6	junction_7	6.79135104228841	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCTGTAATACATTTGT	NA	False	NA	-66	True	NA	NA	NA	92458517	92347938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311_92399450_92402560_92402675_92435455_92435640_92457805
ES_00049149	chr6	-	6622	35	ISM	ENSMUSG00000030022.15	ENSMUST00000113438.8	8016	40	33686	6	-8365	-3	3prime_fragment	FALSE	canonical	2	6	junction_11	5.34744384817106	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATAGATGCTTCTCTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	92886787	92749685	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080_92837186_92840307_92840428_92846915_92847081_92849268_92849434_92849770_92849982_92856824_92856952_92857600_92857731_92857816_92857984_92864321_92864418_92864666_92864785_92866862_92867000_92867089_92867272_92871221_92871368_92878355_92878461_92880668_92880811_92882134_92882282_92885457_92885564_92885678_92885720_92886669
ES_00049150	chr6	-	4519	5	FSM	ENSMUSG00000030022.15	ENSMUST00000130314.2	4519	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	5.11737237261468	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGTTGCCCACTCCTA	NA	False	NA	NA	False	NA	NA	NA	92837136	92822574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080
ES_00049152	chr6	-	537	2	FSM	ENSMUSG00000045095.17	ENSMUST00000204788.2	537	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTTCATCCATATCATT	115	False	NA	NA	False	ATTAAA	-18	NA	93769520	93762283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_93762628_93769327
ES_00049153	chr6	-	501	5	FSM	ENSMUSG00000035245.13	ENSMUST00000204331.3	501	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	20.0499376557634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATAAGGTAGGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	97125821	97122230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97122446_97124355_97124413_97124837_97124970_97125151_97125220_97125792
ES_00049154	chr6	-	5940	17	NNC	ENSMUSG00000030059.16	novel	5732	17	NA	NA	0	-163	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_16	24.0142373135188	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTCAACTTACTTATGT	7468	False	NA	NA	False	AATAAA	-26	NA	97156083	97130120	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155471
ES_00049155	chr6	-	2561	18	FSM	ENSMUSG00000030061.17	ENSMUST00000204056.2	2561	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	168.014169776465	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTATAGTCAAGTCTC	NA	False	NA	-18	True	AGTAAA	-17	NA	97182520	97160778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182063_97182309_97182493
ES_00049156	chr6	-	3849	13	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_12	12.9871731591854	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	97289411	97263827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97289287
ES_00049157	chr6	-	4271	20	ISM	ENSMUSG00000030064.17	ENSMUST00000113359.8	4311	23	46713	-221	-15837	0	3prime_fragment	TRUE	canonical	1	3	junction_19	20.6139828293477	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	97389534	97263827	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97389448
ES_00049159	chr6	-	2361	7	FSM	ENSMUSG00000093661.2	ENSMUST00000032151.3	2515	7	121	33	121	-33	multi-exon	FALSE	canonical	1	1	junction_6	2.11476292340825	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTGAAGTAAAAATAAAATA	NA	False	NA	NA	False	TTTAAA	-42	NA	99643611	99602128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_99604015_99609217_99609374_99613069_99613137_99616123_99616185_99617576_99617672_99628679_99628753_99643588
ES_00049160	chr6	-	412	2	FSM	ENSMUSG00000072872.4	ENSMUST00000205164.2	412	2	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCACCAAGAAAAACACCAAC	NA	False	NA	NA	False	AAGAAA	-34	NA	100263709	100210054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100210201_100263443
ES_00049161	chr6	-	448	1	FSM	ENSMUSG00000107690.2	ENSMUST00000205178.2	1089	1	-91	732	-91	-732	mono-exon	FALSE	NA	NA	NA	NA	NA	528	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAAGTTTA	NA	False	NA	NA	False	NA	NA	NA	100250750	100250302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100250300_100250800
ES_00049162	chr6	-	3227	1	FSM	ENSMUSG00000108122.2	ENSMUST00000204269.2	1525	1	-1786	84	-1786	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTAGTAGTATGCCAGG	NA	False	NA	NA	False	AAAACA	-5	NA	100641210	100637983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100638000_100641200
ES_00049164	chr6	-	229	2	Intergenic	novelGene_3502	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCAGGTTTGCTGTAGGT	NA	False	NA	NA	False	NA	NA	NA	111967214	111960500	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_111960718_111967202
ES_00049168	chr6	-	1304	2	FSM	ENSMUSG00000086429.10	ENSMUST00000124246.4	1181	2	-123	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054294	113047358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113048397_113054028
ES_00049169	chr6	-	876	2	FSM	ENSMUSG00000042873.12	ENSMUST00000203665.2	1414	2	0	538	0	-538	multi-exon	FALSE	canonical	3	6	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATGGCTCAACAGT	NA	False	NA	NA	False	NA	NA	NA	113170904	113152893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113153644_113170778
ES_00049171	chr6	-	2128	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	14	44	combination_of_known_splicesites	FALSE	canonical	3	29	junction_9	124.029068675626	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGGTAGGAAGAACAGGC	NA	False	NA	24	True	TATAAA	-37	NA	113354830	113343571	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354450
ES_00049175	chr6	-	683	1	FSM	ENSMUSG00000030286.7	ENSMUST00000203526.2	1216	1	521	12	521	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCTGTCTCGAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	113508058	113507375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113507400_113508100
ES_00049176	chr6	-	460	3	FSM	ENSMUSG00000030298.11	ENSMUST00000145979.2	460	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	20.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGCATTTCCTGGAGACC	7850	False	NA	NA	False	NA	NA	NA	113712031	113707556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113707869_113711506_113711641_113712017
ES_00049178	chr6	-	3968	11	FSM	ENSMUSG00000000441.18	ENSMUST00000130528.8	3968	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	222.747053852571	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	115611582	115595027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115609857_115609957_115611513
ES_00049183	chr6	-	913	8	FSM	ENSMUSG00000059900.15	ENSMUST00000127728.4	894	8	0	-19	0	7	multi-exon	FALSE	canonical	2	2	junction_7	23.8772370466013	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTCCTTTAGATTTCT	NA	False	NA	NA	False	AATAAA	-37	NA	115711912	115706084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115711887
ES_00049184	chr6	-	1106	10	NIC	ENSMUSG00000059900.15	novel	811	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	20.2319878739914	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115739326	115706091	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115739233
ES_00049185	chr6	-	669	5	FSM	ENSMUSG00000030322.13	ENSMUST00000203643.2	669	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	45.2071620431984	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTGTT	NA	False	NA	NA	False	NA	NA	NA	115825927	115819304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115825866
ES_00049186	chr6	-	439	3	FSM	ENSMUSG00000030123.16	ENSMUST00000205003.2	542	3	103	0	103	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCTGCTGGGCTAGGAG	1843	False	NA	NA	False	NA	NA	NA	115933696	115932594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115932818_115932965_115933041_115933555
ES_00049187	chr6	-	6115	1	FSM	ENSMUSG00000030126.18	ENSMUST00000173117.7	5486	1	-2614	1985	-2614	-1985	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCACAAAACAGTTGAAGA	NA	False	NA	NA	False	ACTAAA	-28	NA	116089969	116083854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116083900_116090000
ES_00049188	chr6	-	891	1	FSM	ENSMUSG00000030126.18	ENSMUST00000204574.2	2697	1	-208	2014	-208	-2014	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTTGGTTATTATGTA	NA	False	NA	NA	False	NA	NA	NA	116151482	116150591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_116150600_116151500
ES_00049190	chr6	-	554	9	ISM	ENSMUSG00000004988.10	ENSMUST00000203082.3	815	10	357	0	0	0	3prime_fragment	FALSE	canonical	1	3	junction_3	4.29389100932942	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2519	False	NA	NA	False	ATTAAA	-17	NA	117914296	117910519	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
ES_00049192	chr6	-	3933	19	FSM	ENSMUSG00000030110.14	ENSMUST00000088790.9	4497	19	564	0	-21	0	multi-exon	FALSE	canonical	0	0	junction_9	1.69603750249708	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGCTTCCTAATCTCC	NA	False	NA	NA	False	ATTAAA	-14	NA	118174115	118131526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_118132397_118140148_118140249_118141683_118141822_118142870_118142942_118144856_118144980_118145082_118145298_118146082_118146191_118146793_118146942_118150375_118150630_118151197_118151318_118151967_118152079_118152683_118152810_118153138_118153398_118155425_118155629_118156232_118156429_118157178_118157424_118158785_118159074_118161137_118161402_118174021
ES_00049195	chr6	-	2173	5	FSM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	0	1	0	-1	multi-exon	FALSE	canonical	3	7	junction_4	2.73861278752583	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTCCCTCTCCTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	119426347	119409492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119426177
ES_00049196	chr6	-	6514	17	NIC	ENSMUSG00000030172.16	novel	6719	20	NA	NA	43	781	intron_retention	FALSE	canonical	2	7	junction_13	38.7798272301463	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGAGCTGTGTTTTAA	NA	False	NA	-27	True	ATTAAA	-31	NA	119824977	119548809	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119756437_119756594_119760349_119760425_119773867_119774285_119824837
ES_00049197	chr6	-	10559	28	FSM	ENSMUSG00000045962.17	ENSMUST00000060043.13	10575	28	17	-1	0	1	multi-exon	FALSE	canonical	1	2	junction_17	5.22340412157474	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTTGTTCTTTCTGAC	7175	False	NA	0	True	AATAAA	-22	NA	120015616	119900928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119929645_119929931_119930731_119931194_119933031_119933158_119937604_119937686_119945436_119945625_119946197_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
ES_00049198	chr6	-	1757	1	FSM	ENSMUSG00000045962.17	ENSMUST00000161512.3	1426	1	101	-432	101	432	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGGACTATTGTCTAA	8102	False	NA	NA	False	NA	NA	NA	119940593	119938836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119938800_119940600
ES_00049199	chr6	-	7252	20	NNC	ENSMUSG00000041372.11	novel	3677	20	NA	NA	-1211	2324	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_15	17.6705774517763	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTCATGTACATTAAT	NA	False	NA	2	True	NA	NA	NA	120272731	120177709	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192465_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561_120200630_120201036_120201157_120201505_120201597_120202053_120202150_120208474_120208553_120209848_120209953_120271351
ES_00049201	chr6	-	2483	12	NIC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	258	-3	combination_of_known_junctions	FALSE	canonical	3	7	junction_8	104.352390905064	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTCAGGGCTCTACAAA	NA	False	NA	-17	True	AATAAA	-15	NA	120341059	120301286	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319039_120325348_120325492_120327167_120327352_120330961_120331016_120341034
ES_00049202	chr6	-	2759	12	NIC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	16	-3	combination_of_known_junctions	FALSE	canonical	1	3	junction_11	89.0569508565601	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTCAGGGCTCTACAAA	NA	False	NA	-17	True	AATAAA	-15	NA	120341301	120301286	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120341046
ES_00049203	chr6	-	967	7	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	-5	-3368	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	80.8386596183341	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGAAATGAAATTCTTT	NA	False	NA	NA	False	AAGAAA	-3	NA	120508270	120489822	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_120490030_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
ES_00049204	chr6	-	209	1	Intergenic	novelGene_3528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAGTTCAGGGCCGAGC	NA	False	NA	NA	False	NA	NA	NA	120543191	120542982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_120543000_120543200
ES_00049207	chr6	-	2617	1	FSM	ENSMUSG00000107971.2	ENSMUST00000204946.2	2094	1	-16	-507	-16	507	mono-exon	FALSE	NA	NA	NA	NA	NA	805	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAAGTGTGACTGATGGG	NA	False	NA	NA	False	NA	NA	NA	120891970	120889353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_120889400_120892000
ES_00049208	chr6	-	3296	21	NIC	ENSMUSG00000051586.18	novel	9204	32	NA	NA	0	-14963	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	16.1133485036475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGCTGCCCTCAAGACCT	NA	False	NA	NA	False	AATATA	-24	NA	121087054	120950266	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_120950609_120959492_120959689_120978568_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
ES_00049209	chr6	-	3860	14	FSM	ENSMUSG00000040669.15	ENSMUST00000079560.10	3839	14	0	-21	0	21	multi-exon	FALSE	canonical	3	590	junction_10	176.028608487135	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTCCTTAGCACAAACGA	9596	False	NA	9	True	AGTAAA	-42	NA	122313974	122294668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816
ES_00049210	chr6	-	4110	15	FSM	ENSMUSG00000040669.15	ENSMUST00000160163.8	3289	15	-368	-453	244	0	multi-exon	FALSE	canonical	3	72	junction_12	285.154952506134	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTTCACAAAACAGGAG	8754	False	NA	-131	True	NA	NA	NA	122316939	122294808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311924_122312043_122313816_122313975_122316556
ES_00049211	chr6	-	3530	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161877.8	3530	14	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_11	292.50572239383	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9122	False	NA	-11	True	AATAAA	-14	NA	122316571	122295261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311924_122312043_122313816_122313975_122316556
ES_00049213	chr6	-	5655	8	NIC	ENSMUSG00000040649.16	novel	1372	8	NA	NA	-53	1	intron_retention	FALSE	canonical	2	12	junction_2	60.2488038665245	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGTGATTTGTTCTT	9187	False	NA	NA	False	AATAAA	-19	NA	122463517	122424253	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_122424419_122426786_122426952_122429512_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
ES_00049214	chr6	-	2976	2	ISM	ENSMUSG00000040649.16	ENSMUST00000135320.2	429	3	93	-2	93	0	intron_retention	FALSE	canonical	3	70	junction_1	0	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGAGTGTGATTTGTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	122429598	122424254	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_122424419_122426786
ES_00049215	chr6	-	2075	7	FSM	ENSMUSG00000040613.15	ENSMUST00000112587.11	2072	7	0	-3	0	3	multi-exon	FALSE	canonical	2	5	junction_5	15.0185071014251	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTGTTTGTGGTGT	9984	False	NA	NA	False	AGTAAA	-17	NA	122577086	122554754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016
ES_00049216	chr6	-	1115	2	Genic_Genomic	ENSMUSG00000080932.4	novel	615	1	NA	NA	-8365	74	multi-exon	FALSE	canonical	3	7	junction_1	0	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGGTTTCTCTGTGTAGC	NA	False	NA	NA	False	AATAAA	-40	NA	122684352	122675298	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_122676037_122683975
ES_00049217	chr6	-	3770	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	0	6592	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAATGCTGTCTTTCTTCC	8913	False	NA	53	True	NA	NA	NA	122719481	122698175	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_122698224_122704781_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ES_00049218	chr6	-	272	1	FSM	ENSMUSG00000083713.2	ENSMUST00000120735.2	495	1	248	-25	248	25	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCAAACCATTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	123196158	123195886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_123195900_123196200
ES_00049220	chr6	-	1074	3	FSM	ENSMUSG00000004268.12	ENSMUST00000141251.2	1074	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	29.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGGCAAGGTACAGTC	NA	False	NA	NA	False	NA	NA	NA	124689104	124681913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124682620_124682703_124682806_124688838
ES_00049221	chr6	-	2293	15	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	15	3	intron_retention	FALSE	canonical	3	99	junction_9	22.8728740508695	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCCTCCAAGTCTGTGC	8817	False	NA	-10	True	AATAAA	-18	NA	124710030	124697679	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
ES_00049222	chr6	-	2556	11	ISM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	1336	2	0	-2	3prime_fragment	FALSE	canonical	3	37	junction_5	7.92779919019144	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACTTGGCTGAACTAAGG	8715	False	NA	-5	True	NA	NA	NA	124745300	124737019	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
ES_00049226	chr6	-	453	2	FSM	ENSMUSG00000038429.11	ENSMUST00000154189.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	3	929	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACTCTGAGGGGCCAGA	NA	False	NA	NA	False	NA	NA	NA	124794856	124794208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124794435_124794629
ES_00049228	chr6	-	454	4	FSM	ENSMUSG00000023191.10	ENSMUST00000147296.8	637	4	0	183	0	-183	multi-exon	FALSE	canonical	3	12	junction_3	1.24721912892465	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACCACCAGAGAACCCCC	1516	False	NA	NA	False	NA	NA	NA	124827956	124822470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124822622_124822904_124823007_124827588_124827714_124827880
ES_00049229	chr6	-	233	1	FSM	ENSMUSG00000107578.2	ENSMUST00000205209.2	445	1	169	43	169	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAAGGTGCTCAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	124928559	124928326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124928300_124928600
ES_00049230	chr6	-	1685	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_7	625.701826359972	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942368	124935778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942336
ES_00049231	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
ES_00049232	chr6	-	212	2	Antisense	novelGene_ENSMUSG00000067714.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCATTAATTTGAGAGGG	2208	False	NA	NA	False	NA	NA	NA	125047642	125042418	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_125042583_125047594
ES_00049233	chr6	-	206	2	Antisense	novelGene_ENSMUSG00000088208.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCATTAATTTGAGAGGG	NA	False	NA	NA	False	NA	NA	NA	125104478	125042418	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_125042614_125104467
ES_00049235	chr6	-	577	2	FSM	ENSMUSG00000057666.19	ENSMUST00000147954.2	565	2	0	-12	0	12	multi-exon	FALSE	canonical	3	6089	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGCGGTGTTGGGGGA	NA	False	NA	-3	True	AATAAA	-27	NA	125139490	125138803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_125139065_125139174
ES_00049239	chr6	-	823	4	FSM	ENSMUSG00000030345.17	ENSMUST00000171945.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.8878405775519	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCATGGTGAGTTAGCA	NA	False	NA	NA	False	CATAAA	-25	NA	126862347	126853155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_126853514_126854122_126854302_126857187_126857318_126862191
ES_00049240	chr6	-	2240	9	NIC	ENSMUSG00000030346.17	novel	2233	9	NA	NA	0	12	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.0144428279344	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTTTTATTATGATTC	5277	False	NA	NA	False	TATAAA	-23	NA	126916538	126900000	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911669_126911813_126912915_126912972_126916456
ES_00049242	chr6	-	439	1	FSM	ENSMUSG00000081113.2	ENSMUST00000121087.2	447	1	-59	67	-59	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGACATTGACGGGG	NA	False	NA	NA	False	NA	NA	NA	127259531	127259092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_127259100_127259500
ES_00049245	chr6	-	279	3	Antisense	novelGene_ENSMUSG00000108176.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGATGCTGTTAAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	128396307	128292555	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_128292613_128308624_128308655_128396115
ES_00049250	chr6	-	227	1	Intergenic	novelGene_3554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATATTGATGAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	128444154	128443927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_128443900_128444200
ES_00049251	chr6	-	323	1	FSM	ENSMUSG00000057370.6	ENSMUST00000081668.6	483	1	8	152	8	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAACGACCAGAAGAAAAAG	5484	False	NA	NA	False	NA	NA	NA	128508355	128508032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_128508000_128508400
ES_00049252	chr6	-	344	1	NIC	ENSMUSG00000108095.2	novel	2971	2	NA	NA	817	-2013	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGCTGTAAGGTCTC	3198	False	NA	NA	False	ACTAAA	-26	NA	128823105	128822761	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_128822800_128823100
ES_00049257	chr6	-	1035	3	FSM	ENSMUSG00000030189.16	ENSMUST00000203157.2	1035	3	0	0	0	0	multi-exon	FALSE	canonical	3	3049	junction_2	113	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAATACCACATGGGGAT	7602	False	NA	-84	True	ATTAAA	-9	NA	131345981	131342062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_131342369_131344727_131344827_131345351
ES_00049260	chr6	-	4891	8	NNC	ENSMUSG00000030203.18	novel	5104	7	NA	NA	-14414	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	32.541966625217	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTGAGACGTGGCT	8718	False	NA	-3	True	AATAAA	-24	NA	134784002	134692435	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808_134738398_134783784_134783870_134783951
ES_00049261	chr6	-	1969	4	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	34.4512538072113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874900	134846055	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_134847407_134864592_134864749_134873820_134874177_134874794
ES_00049277	chr6	-	1854	1	FSM	ENSMUSG00000040250.15	ENSMUST00000204234.2	1740	1	-105	-9	-105	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	7159	False	NA	-2	True	AATAAA	-26	NA	146452983	146451129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_146451100_146453000
ES_00049279	chr6	-	3278	13	NNC	ENSMUSG00000040234.17	novel	3241	12	NA	NA	0	45538	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	265.275786787177	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTTTAGGGTTCGACTT	NA	False	NA	NA	False	NA	NA	NA	146536095	146458311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_146458350_146503850_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
ES_00049286	chr6	-	5984	6	FSM	ENSMUSG00000040029.16	ENSMUST00000136896.8	6056	6	69	3	69	-3	multi-exon	FALSE	canonical	3	205	junction_2	24.8274042138924	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTCTGTCTGCTCTATGG	NA	False	NA	-4	True	AATAAA	-24	NA	148691420	148672183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568
ES_00049288	chr6	-	5273	25	NNC	ENSMUSG00000040029.16	novel	5360	25	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_13	61.9162600928778	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGAACTCTGTCTGCTC	NA	False	NA	-9	True	AATAAA	-19	NA	148732892	148672188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_148674305_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701766_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
ES_00049295	chr6	-	2737	6	FSM	ENSMUSG00000039985.15	ENSMUST00000081956.12	2737	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	848.577303490967	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148846324	148822554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846086
ES_00049302	chr6	+	792	1	Intergenic	novelGene_3356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	306	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTTACAGAAAATCTAAGA	NA	False	NA	NA	False	NA	NA	NA	5321501	5322293	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_5321500_5322300
ES_00049303	chr6	+	306	1	Intergenic	novelGene_3364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGGAGCCACACACGTG	NA	False	NA	NA	False	NA	NA	NA	13853802	13854108	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_13853800_13854100
ES_00049304	chr6	+	643	1	Intergenic	novelGene_3368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGCATTTTTGTGCCTC	NA	False	NA	NA	False	AAGAAA	-44	NA	16879201	16879844	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_16879200_16879800
ES_00049305	chr6	+	207	1	Intergenic	novelGene_3369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAATGGGACCTCATGAA	NA	False	NA	NA	False	NA	NA	NA	17396324	17396531	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_17396300_17396500
ES_00049307	chr6	+	321	1	Intergenic	novelGene_3370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCCCTTTACCCAGCTAC	NA	False	NA	NA	False	NA	NA	NA	18638501	18638822	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_18638500_18638800
ES_00049308	chr6	+	212	1	Intergenic	novelGene_3371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTGGGGAGGCGAGGT	NA	False	NA	NA	False	NA	NA	NA	19320704	19320916	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_19320700_19320900
ES_00049309	chr6	+	360	1	Intergenic	novelGene_3382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	250	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAATAGAAAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	29982617	29982977	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_29982600_29983000
ES_00049310	chr6	+	200	1	Intergenic	novelGene_3383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTCTCCCACTAATGAC	NA	False	NA	NA	False	TTTAAA	-3	NA	30037847	30038047	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_30037800_30038000
ES_00049311	chr6	+	209	1	Intergenic	novelGene_3395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAAACTTTTGTTTCATG	3585	False	NA	NA	False	NA	NA	NA	37533807	37534016	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_37533800_37534000
ES_00049312	chr6	+	205	1	Intergenic	novelGene_3396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTTTATAAAGCATGTT	NA	False	NA	NA	False	NA	NA	NA	37792512	37792717	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_37792500_37792700
ES_00049314	chr6	+	258	1	Intergenic	novelGene_3401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAATATGCATTGGAAAT	4767	False	NA	NA	False	NA	NA	NA	38359685	38359943	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38359700_38359900
ES_00049315	chr6	+	364	1	Intergenic	novelGene_3404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGACATTCTTGATGA	3201	False	NA	NA	False	NA	NA	NA	38505029	38505393	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38505000_38505400
ES_00049316	chr6	+	216	1	Intergenic	novelGene_3405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	953	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAAGAATTTTCTTACT	6369	False	NA	NA	False	NA	NA	NA	38520311	38520527	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38520300_38520500
ES_00049318	chr6	+	207	1	Intergenic	novelGene_3410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTGAATGCATTCCACC	NA	False	NA	NA	False	NA	NA	NA	39345661	39345868	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39345700_39345900
ES_00049320	chr6	+	221	1	Intergenic	novelGene_3413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCTTACTTTTAACTCAC	NA	False	NA	NA	False	NA	NA	NA	39561837	39562058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39561800_39562100
ES_00049321	chr6	+	272	1	Intergenic	novelGene_3418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	41452589	41452861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_41452600_41452900
ES_00049322	chr6	+	281	1	Intergenic	novelGene_3420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTTTTAAGCACCAGAT	NA	False	NA	NA	False	NA	NA	NA	43313185	43313466	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_43313200_43313500
ES_00049323	chr6	+	243	1	Intergenic	novelGene_3423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGCTTTAAAAAATGGCA	NA	False	NA	NA	False	TTTAAA	-29	NA	47023671	47023914	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47023700_47023900
ES_00049324	chr6	+	207	1	Intergenic	novelGene_3425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCACTATCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	47271211	47271418	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47271200_47271400
ES_00049325	chr6	+	202	1	Intergenic	novelGene_3437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGACAACATTTTACTAAAC	NA	False	NA	NA	False	NA	NA	NA	50013232	50013434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_50013200_50013400
ES_00049326	chr6	+	214	1	Intergenic	novelGene_3443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTCTGATTTCATTAA	NA	False	NA	NA	False	NA	NA	NA	52687713	52687927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_52687700_52687900
ES_00049327	chr6	+	217	1	Intergenic	novelGene_3444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTGTTGTGGATTCT	NA	False	NA	NA	False	NA	NA	NA	54021755	54021972	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_54021800_54022000
ES_00049328	chr6	+	219	1	Intergenic	novelGene_3450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTCAATTCTTATAAGT	NA	False	NA	NA	False	NA	NA	NA	60284491	60284710	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_60284500_60284700
ES_00049329	chr6	+	205	1	Intergenic	novelGene_3451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTACACTTGTTAGTGTC	NA	False	NA	NA	False	NA	NA	NA	64712939	64713144	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_64712900_64713100
ES_00049330	chr6	+	1035	1	Intergenic	novelGene_3459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAGAGAAATTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	67631515	67632550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_67631500_67632600
ES_00049331	chr6	+	218	1	Intergenic	novelGene_3461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCTTATATGCAGAACAT	NA	False	NA	NA	False	NA	NA	NA	71582308	71582526	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_71582300_71582500
ES_00049332	chr6	+	217	1	Intergenic	novelGene_3465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	799	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGGTGTTAAAATCTC	NA	False	NA	NA	False	NA	NA	NA	72887795	72888012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_72887800_72888000
ES_00049334	chr6	+	233	1	Intergenic	novelGene_3477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTGTTTTTGAGACAG	NA	False	NA	NA	False	NA	NA	NA	86506487	86506720	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_86506500_86506700
ES_00049335	chr6	+	231	1	Intergenic	novelGene_3478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTACCACTGATCTATT	NA	False	NA	NA	False	NA	NA	NA	86511840	86512071	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_86511800_86512100
ES_00049336	chr6	+	359	1	Intergenic	novelGene_3488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTTTATCTTTACCTTG	NA	False	NA	NA	False	GATAAA	-20	NA	90883533	90883892	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_90883500_90883900
ES_00049337	chr6	+	390	1	Intergenic	novelGene_3490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGGAAAGCAGAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	91809192	91809582	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_91809200_91809600
ES_00049338	chr6	+	466	1	Intergenic	novelGene_3492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTCTGTCTGGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	92541687	92542153	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_92541700_92542200
ES_00049340	chr6	+	2904	1	Intergenic	novelGene_3499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGATAACTAATGATGTT	NA	False	NA	NA	False	NA	NA	NA	108061943	108064847	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_108061900_108064800
ES_00049341	chr6	+	220	1	Intergenic	novelGene_3504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	961	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAACTAAGCGTTTAG	NA	False	NA	NA	False	NA	NA	NA	113198488	113198708	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_113198500_113198700
ES_00049342	chr6	+	201	1	Intergenic	novelGene_3506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115471551	115471752	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_115471600_115471800
ES_00049343	chr6	+	1372	1	Intergenic	novelGene_3507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTCCAAAAGCCCCAAACA	NA	False	NA	NA	False	NA	NA	NA	115661042	115662414	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_115661000_115662400
ES_00049344	chr6	+	263	1	Intergenic	novelGene_3512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCCACTGAGCCATCTCA	NA	False	NA	NA	False	NA	NA	NA	117855098	117855361	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_117855100_117855400
ES_00049345	chr6	+	254	1	Intergenic	novelGene_3514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCCACCTTTATTCTTA	467	False	NA	NA	False	NA	NA	NA	117907645	117907899	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_117907600_117907900
ES_00049347	chr6	+	228	1	Intergenic	novelGene_3522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGTTTTTTTGAGAC	NA	False	NA	NA	False	NA	NA	NA	120276180	120276408	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120276200_120276400
ES_00049348	chr6	+	205	1	Intergenic	novelGene_3526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCATTTTTAACATGTC	1568	False	NA	NA	False	NA	NA	NA	120464895	120465100	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120464900_120465100
ES_00049349	chr6	+	231	1	Intergenic	novelGene_3529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACCAGTTATCTTGCCT	NA	False	NA	NA	False	NA	NA	NA	120599775	120600006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120599800_120600000
ES_00049350	chr6	+	251	1	Intergenic	novelGene_3535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTATGTCTCCATTCCT	NA	False	NA	NA	False	TATAAA	-20	NA	123670403	123670654	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_123670400_123670700
ES_00049351	chr6	+	579	1	Intergenic	novelGene_3539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAGAAGCATTAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	124776677	124777256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_124776700_124777300
ES_00049353	chr6	+	387	1	Intergenic	novelGene_3541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAGGACTCTAAACTTGA	NA	False	NA	NA	False	NA	NA	NA	124777924	124778311	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_124777900_124778300
ES_00049354	chr6	+	224	1	Intergenic	novelGene_3542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAACCACATGGTGACT	NA	False	NA	NA	False	NA	NA	NA	124820760	124820984	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_124820800_124821000
ES_00049355	chr6	+	218	1	Intergenic	novelGene_3546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCAGCAGATGCAGATA	NA	False	NA	62	True	NA	NA	NA	125389659	125389877	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_125389700_125389900
ES_00049356	chr6	+	1063	1	Intergenic	novelGene_3552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGACGTACTATTGAAAG	NA	False	NA	NA	False	NA	NA	NA	127496068	127497131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_127496100_127497100
ES_00049357	chr6	+	219	1	Intergenic	novelGene_3553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	563	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTTTCAAATATCATT	NA	False	NA	NA	False	NA	NA	NA	128291604	128291823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_128291600_128291800
ES_00049359	chr6	+	405	1	Intergenic	novelGene_3557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAACCTCCCCCCGGCTT	4198	False	NA	NA	False	NA	NA	NA	128842648	128843053	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_128842600_128843100
ES_00049360	chr6	+	731	1	Intergenic	novelGene_3559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTTACATTAGCCATAC	1471	False	NA	NA	False	NA	NA	NA	128915736	128916467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_128915700_128916500
ES_00049373	chr6	+	248	1	FSM	ENSMUSG00000108014.2	ENSMUST00000203125.2	293	1	13	32	13	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTACTTGTGCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	4367786	4368034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_4367800_4368000
ES_00049374	chr6	+	5211	1	ISM	ENSMUSG00000092035.9	ENSMUST00000176204.8	6667	2	8001	0	7901	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCCTGATCATTTCAG	178	False	NA	NA	False	AATAAA	-36	NA	4755306	4760517	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_4755300_4760500
ES_00049375	chr6	+	2163	5	FSM	ENSMUSG00000089862.9	ENSMUST00000160705.8	624	5	-51	-1488	-5	0	multi-exon	FALSE	canonical	0	0	junction_3	12.6169528809455	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTTCATTGCATTAGTA	4	True	NA	NA	False	AATAAA	-29	NA	8259376	8428767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8401076_8401155_8426970
ES_00049376	chr6	+	299	3	Intergenic	novelGene_3361	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTAAGAGGCTCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	12108512	12162659	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_12108600_12152923_12152945_12162468
ES_00049377	chr6	+	249	1	FSM	ENSMUSG00000083620.2	ENSMUST00000121833.2	994	1	7	738	7	-738	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGCAAGAAAGCAAGCATT	NA	False	NA	NA	False	AATAAA	-20	NA	12857402	12857651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_12857400_12857700
ES_00049379	chr6	+	747	5	FSM	ENSMUSG00000029571.15	ENSMUST00000122916.2	723	5	-24	0	-24	0	multi-exon	FALSE	canonical	3	105	junction_4	3.26917420765551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTGGCCCACTTGATA	338	False	NA	NA	False	TTTAAA	-10	NA	13070225	13081651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538
ES_00049380	chr6	+	658	4	FSM	ENSMUSG00000009376.16	ENSMUST00000152802.2	683	4	0	25	0	-25	multi-exon	FALSE	canonical	3	13	junction_1	2.49443825784929	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATGTTGGCTCTAGCT	NA	False	NA	NA	False	AATAAA	-14	NA	17534999	17547184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17535103_17535836_17535937_17540436_17540656_17546948
ES_00049381	chr6	+	421	1	FSM	ENSMUSG00002076529.1	ENSMUST00020182879.1	109	1	5	-317	5	317	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGGCCCGGCCCGGCCCG	19	False	NA	NA	False	NA	NA	NA	17693940	17694361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_17693900_17694400
ES_00049383	chr6	+	2513	11	NIC	ENSMUSG00000029670.13	novel	3800	12	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	44.129468612255	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATCGTGATGTGGCAGT	-11	True	NA	20	True	AATATA	-19	NA	21949647	21974900	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_21949793_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ES_00049386	chr6	+	5143	18	NNC	ENSMUSG00000029772.18	novel	5155	17	NA	NA	-169	-5	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	30.0608379663434	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAACTGATCTGTGTCC	7355	False	NA	-2	True	AATAAA	-6	NA	29768272	29912298	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_29768336_29768548_29768906_29863141_29863251_29870566_29870711_29871184_29871286_29878527_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
ES_00049387	chr6	+	1189	1	FSM	ENSMUSG00000029772.18	ENSMUST00000202115.2	2390	1	219	982	219	-982	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCATCCCCAGCATTATG	188	False	NA	NA	False	NA	NA	NA	29876896	29878085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_29876900_29878100
ES_00049388	chr6	+	1939	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	178.740889433715	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCATATGTATGGTTTGG	-19	True	NA	0	True	AATAAA	-16	NA	30047995	30144852	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ES_00049390	chr6	+	1830	12	NIC	ENSMUSG00000058440.15	novel	2491	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_11	127.487870108467	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	0	True	NA	2	True	AATAAA	-18	NA	30048070	30144854	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ES_00049391	chr6	+	2234	1	FSM	ENSMUSG00000103108.3	ENSMUST00000194541.3	2234	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCTAGTTCTCCCAATGA	26	False	NA	NA	False	AATAAA	-27	NA	30172891	30175125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_30172900_30175100
ES_00049392	chr6	+	581	3	FSM	ENSMUSG00000086855.2	ENSMUST00000134541.2	581	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACATGCTCATGGTTCTGT	NA	False	NA	NA	False	AAAAAG	-13	NA	31349829	31360812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_31349909_31351616_31351696_31360389
ES_00049395	chr6	+	1371	4	NNC	ENSMUSG00000038871.6	novel	2220	3	NA	NA	16	-482	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	36.5786823163438	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAAGGTGCCTCGAGTGTG	NA	False	NA	19	True	AATAAA	-24	NA	34453306	34482066	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_34453358_34464224_34464268_34464469_34464886_34481205
ES_00049396	chr6	+	413	4	FSM	ENSMUSG00000029761.17	ENSMUST00000126181.8	413	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	93.1032879238012	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAGGGAAGAGA	NA	False	NA	9	True	NA	NA	NA	34722941	34732742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34722951_34724820_34724905_34730377_34730524_34732568
ES_00049397	chr6	+	1352	3	ISM	ENSMUSG00000038836.16	ENSMUST00000115014.8	805	4	1138	-645	1137	570	3prime_fragment	FALSE	canonical	3	5	junction_2	0.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTGTACTTATTACAGAG	3254	False	NA	NA	False	AATAAA	-28	NA	34758961	34763224	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_34759154_34760504_34760566_34762125
ES_00049398	chr6	+	801	1	FSM	ENSMUSG00000082920.2	ENSMUST00000119745.2	785	1	-16	0	-16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTAAGTTTTCTGT	7890	False	NA	NA	False	AAAAAG	-36	NA	34763597	34764398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_34763600_34764400
ES_00049399	chr6	+	1391	9	NIC	ENSMUSG00000029848.12	novel	1455	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	25.8202924073295	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTTTTGGTGTCCTGGC	NA	False	NA	10	True	TATAAA	-15	NA	34897894	34916276	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ES_00049401	chr6	+	207	2	Antisense	novelGene_ENSMUSG00000063455.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGACTACACACAGCC	NA	False	NA	NA	False	NA	NA	NA	38192100	38193780	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_38192153_38193625
ES_00049402	chr6	+	339	2	Antisense	novelGene_ENSMUSG00000029826.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	357	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAATTGTAAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	38274458	38336567	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_38274493_38336262
ES_00049403	chr6	+	407	1	Intergenic	novelGene_3406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTCTTTTTTGATCTTC	6903	False	NA	NA	False	NA	NA	NA	38520845	38521252	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38520800_38521300
ES_00049404	chr6	+	7314	13	NNC	ENSMUSG00000029823.17	novel	2419	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	55.4316395812596	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGCTCAGCTGTCATTT	NA	False	NA	NA	False	AATAAA	-23	NA	38528465	38581975	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_38528844_38531914_38535011_38536138_38536240_38542589_38542658_38545781_38546941_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
ES_00049405	chr6	+	249	2	NNC	ENSMUSG00000029823.17	novel	2291	2	NA	NA	998	722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCCTTTCTCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	38529775	38562763	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_38529828_38562566
ES_00049406	chr6	+	202	1	Intergenic	novelGene_3409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAATCGAAATGCATCA	NA	False	NA	NA	False	NA	NA	NA	39342758	39342960	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39342800_39343000
ES_00049407	chr6	+	392	2	Antisense	novelGene_ENSMUSG00000029922.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	71	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	6671	False	NA	NA	False	NA	NA	NA	39388069	39392781	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_39388122_39392441
ES_00049408	chr6	+	576	2	FSM	ENSMUSG00000068601.3	ENSMUST00000090237.3	830	2	0	254	0	138	multi-exon	FALSE	canonical	2	4	junction_1	0	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTAGTCCCTATCTGG	NA	False	NA	NA	False	NA	NA	NA	39397311	39397974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_39397587_39397673
ES_00049410	chr6	+	465	5	NNC	ENSMUSG00000002416.14	novel	4371	4	NA	NA	0	172371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1104.46737729097	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGTTTCTCTGTGTCGTC	NA	False	NA	NA	False	NA	NA	NA	39569516	39752687	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_39569647_39573384_39573530_39575199_39575296_39576325_39576391_39752658
ES_00049411	chr6	+	764	8	FSM	ENSMUSG00000029916.12	ENSMUST00000201342.4	785	8	0	21	0	-21	multi-exon	FALSE	canonical	3	547	junction_1	45.5313303211791	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCTGATGTTGGGAATG	NA	False	NA	NA	False	NA	NA	NA	40302418	40345803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514
ES_00049415	chr6	+	723	4	FSM	ENSMUSG00000029686.16	ENSMUST00000146828.8	723	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	292.506790044645	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAGAGTGTCCTGAAGT	NA	False	NA	NA	False	ATTAAA	-40	NA	47430331	47474171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_47430562_47461677_47461979_47472000_47472176_47474154
ES_00049417	chr6	+	738	6	FSM	ENSMUSG00000107476.4	ENSMUST00000205224.2	738	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.0976176963403	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCGGTTCCATTCAAAG	NA	False	NA	NA	False	NA	NA	NA	48489371	48505448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_48489447_48491085_48491261_48492170_48492291_48501957_48502057_48504378_48504484_48505284
ES_00049418	chr6	+	2937	2	NNC	ENSMUSG00000052751.17	novel	2959	2	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGTGGCTGGTGGTGTTC	NA	False	NA	17	True	AATAAA	-15	NA	48570832	48576012	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_48570987_48573229
ES_00049420	chr6	+	3012	3	NNC	ENSMUSG00000052751.17	novel	3057	3	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	2	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGCTGGTGGTGTTCT	NA	False	NA	18	True	AATAAA	-16	NA	48570873	48576013	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_48570987_48571795_48571911_48573229
ES_00049421	chr6	+	1711	1	FSM	ENSMUSG00000029816.11	ENSMUST00000205103.2	1832	1	14	107	14	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTCAGGAAGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	49013493	49015204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_49013500_49015200
ES_00049423	chr6	+	243	1	Intergenic	novelGene_3434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTGATAATAACGGTTCT	8136	False	NA	NA	False	AAAAAG	-27	NA	49327464	49327707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_49327500_49327700
ES_00049424	chr6	+	1304	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344756	49366214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
ES_00049425	chr6	+	1483	10	NNC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-67	-45618	at_least_one_novel_splicesite	FALSE	canonical	2	90	junction_1	75.6161521709205	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	106	False	NA	NA	False	AATAAA	-18	NA	49372470	49400668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309
ES_00049426	chr6	+	913	7	NIC	ENSMUSG00000023403.15	novel	2988	23	NA	NA	-40	-45618	combination_of_known_splicesites	FALSE	canonical	2	11	junction_6	102.781321260237	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	133	False	NA	NA	False	AATAAA	-18	NA	49372497	49400668	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49400309
ES_00049427	chr6	+	1054	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	7	506	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	46.4811789867684	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATCATCAAAATAAACACTT	839	False	NA	NA	False	AAAAAG	-26	NA	52079989	52090014	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_52080017_52082951_52083013_52083346_52083500_52083750_52083877_52089327
ES_00049428	chr6	+	650	1	FSM	ENSMUSG00000081979.2	ENSMUST00000121011.2	650	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTATTCACAGCTCGTG	NA	False	NA	NA	False	NA	NA	NA	52095221	52095871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_52095200_52095900
ES_00049429	chr6	+	2909	3	FSM	ENSMUSG00000005503.9	ENSMUST00000031787.8	2877	3	-40	8	-40	-8	multi-exon	FALSE	canonical	1	2	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAGCATTTAAGCATAAG	5411	False	NA	NA	False	AATAAA	-19	NA	52290442	52295355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_52291257_52292722_52292980_52293517
ES_00049430	chr6	+	595	5	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26240	-9180	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6.80073525436772	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGGATTTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	53821967	53835988	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835502_53835591_53835823
ES_00049431	chr6	+	7164	6	NNC	ENSMUSG00000058446.15	novel	5886	5	NA	NA	0	35987	at_least_one_novel_splicesite	TRUE	canonical	1	87	junction_5	219.138677553735	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54793900	54906472	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_54794458_54840884_54840981_54855333_54855440_54861749_54861832_54865440_54871652_54906360
ES_00049432	chr6	+	341	1	FSM	ENSMUSG00000029787.11	ENSMUST00000205188.2	1414	1	-25	1098	-25	-1098	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGACCGGCCCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	56691858	56692199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_56691900_56692200
ES_00049434	chr6	+	4913	26	NIC	ENSMUSG00000029804.18	novel	418	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	8.96963767384168	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTGTATTGTAATTGTG	NA	False	NA	13	True	AATAAA	-21	NA	58808508	58897383	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_58808628_58809386_58809522_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ES_00049435	chr6	+	4808	1	FSM	ENSMUSG00000029804.18	ENSMUST00000205139.2	2762	1	-2478	432	-2478	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAACTTGTTTCTGAATT	NA	False	NA	NA	False	ATTAAA	-20	NA	58876254	58881062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_58876300_58881100
ES_00049437	chr6	+	205	2	Intergenic	novelGene_3453	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1897	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATGAAAGGAAGAGCAGT	NA	False	NA	NA	False	NA	NA	NA	64962709	65002759	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_64962763_65002607
ES_00049438	chr6	+	4847	24	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	25	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	91.8282484923459	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACACCCTTTGTAATGG	1810	False	NA	23	True	AATAAA	-25	NA	65019675	65093040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_65019715_65020189_65020430_65029603_65029780_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
ES_00049439	chr6	+	334	1	FSM	ENSMUSG00000107609.2	ENSMUST00000203705.2	334	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTGTGGCTCTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	65224256	65224590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_65224300_65224600
ES_00049440	chr6	+	1779	1	FSM	ENSMUSG00000107596.2	ENSMUST00000204311.2	1789	1	68	-58	68	58	mono-exon	FALSE	NA	NA	NA	NA	NA	673	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAATGACATAAATAA	NA	False	NA	NA	False	AATAAA	-19	NA	65409211	65410990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_65409200_65411000
ES_00049441	chr6	+	438	1	FSM	ENSMUSG00000108231.2	ENSMUST00000204076.2	310	1	-44	-84	-44	84	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTCCACCAGAGA	NA	False	NA	NA	False	NA	NA	NA	66722956	66723394	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_66723000_66723400
ES_00049442	chr6	+	305	1	FSM	ENSMUSG00000097603.4	ENSMUST00000203974.2	3187	1	1388	1494	1109	1000	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAACAAATCAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	67143295	67143600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_67143300_67143600
ES_00049444	chr6	+	413	3	FSM	ENSMUSG00000053119.12	ENSMUST00000204535.2	413	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	177	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCGGGAGCTGTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	71520875	71551189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_71521018_71537880_71538061_71551098
ES_00049446	chr6	+	221	2	Antisense	novelGene_ENSMUSG00000053470.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGAATATTTTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	71559189	71582061	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_+_71559241_71581891
ES_00049450	chr6	+	433	2	FSM	ENSMUSG00000056666.14	ENSMUST00000129071.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	569	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATGGGTCACTGCTTT	NA	False	NA	NA	False	NA	NA	NA	72583627	72584194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_72583723_72583856
ES_00049451	chr6	+	393	3	FSM	ENSMUSG00000052738.15	ENSMUST00000173409.2	485	3	92	0	92	0	multi-exon	FALSE	canonical	3	1337	junction_1	171.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGAAGGGAAGAATAGGT	NA	False	NA	NA	False	NA	NA	NA	73237434	73241252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_73237575_73240790_73241004_73241212
ES_00049454	chr6	+	242	2	NNC	ENSMUSG00000009145.7	novel	3257	12	NA	NA	8716	44575	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCCCAC	4514	False	NA	NA	False	NA	NA	NA	83043793	83088874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_83044009_83088847
ES_00049455	chr6	+	1016	8	ISM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	270	-4	30	-3	3prime_fragment	FALSE	canonical	3	182	junction_2	10.5521058929254	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTTTTCATCTTCCTTC	131	False	NA	20	True	AATAAA	-12	NA	83055640	83057832	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ES_00049456	chr6	+	791	2	FSM	ENSMUSG00000034968.4	ENSMUST00000041265.4	817	2	12	14	12	-14	multi-exon	FALSE	canonical	0	0	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGCTGCTGCAAGAAGCC	5273	False	NA	NA	False	AATAAA	-8	NA	83063359	83065210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83063604_83064663
ES_00049457	chr6	+	638	4	NNC	ENSMUSG00000030037.10	novel	695	3	NA	NA	0	1954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	360.671903843676	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCCCAC	7463	False	NA	NA	False	NA	NA	NA	83086100	83088874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_83086185_83086294_83086408_83086502_83086917_83088847
ES_00049458	chr6	+	2032	11	ISM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	8732	0	-1993	0	3prime_fragment	FALSE	canonical	3	54	junction_8	8.87693640846886	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1080	False	NA	18	True	ATTAAA	-18	NA	83122822	83129560	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ES_00049462	chr6	+	2859	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	12	-16	combination_of_known_splicesites	FALSE	canonical	2	20	junction_1	140.564575907303	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCTGCTTACCTTACGC	5738	False	NA	8	True	AATAAA	-9	NA	83254386	83281910	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83254554_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ES_00049464	chr6	+	280	4	FSM	ENSMUSG00000006269.8	ENSMUST00000206652.2	645	4	299	66	299	-66	multi-exon	FALSE	canonical	1	1	junction_3	1.69967317119759	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGAGATGATCCAGACGG	NA	False	NA	NA	False	NA	NA	NA	83729113	83730782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83729188_83729364_83729459_83729831_83729910_83730748
ES_00049465	chr6	+	9035	27	FSM	ENSMUSG00000030016.15	ENSMUST00000204751.3	9033	27	-13	11	-13	-11	multi-exon	FALSE	canonical	3	28	junction_1	85.3890158256238	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCTCCCCAACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	83891335	83966521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_83891472_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ES_00049466	chr6	+	4357	26	NIC	ENSMUSG00000030016.15	novel	4366	26	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_22	83.1527365755331	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891374	83963851	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ES_00049468	chr6	+	559	1	FSM	ENSMUSG00000098142.2	ENSMUST00000183053.2	1008	1	272	177	272	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGACCAGGTTGTCTCATG	NA	False	NA	NA	False	NA	NA	NA	84789493	84790052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_84789500_84790100
ES_00049469	chr6	+	988	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	-96	-364	-96	364	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAATGAACTACAG	NA	False	NA	NA	False	NA	NA	NA	85053077	85054065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85053100_85054100
ES_00049470	chr6	+	216	2	Intergenic	novelGene_3475	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	65	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAGTTTTTAAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	85563431	85603243	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_85563453_85603048
ES_00049471	chr6	+	9221	15	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	-49	34592	-49	-1677	5prime_fragment	FALSE	canonical	3	14	junction_3	12.2107346550618	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAATATCATTTCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	85564578	85645028	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_+_85565009_85576826_85576953_85578180_85578374_85584453_85584575_85585967_85587515_85587799_85587919_85592229_85592390_85596415_85600184_85601565_85601700_85604900_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85644848
ES_00049472	chr6	+	1121	8	Fusion	ENSMUSG00000090256.2_ENSMUSG00000090098.8	novel	2166	9	NA	NA	-25731	0	multi-exon	FALSE	non_canonical	0	0	junction_7	19.1439232112534	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85725643	85781039	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_+_85725851_85726991_85727196_85727474_85727717_85728211_85728366_85729034_85729099_85732543_85732644_85733466_85733542_85780964
ES_00049473	chr6	+	480	1	FSM	ENSMUSG00000040078.10	ENSMUST00000160012.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGGCTGTTGTCATCGCC	NA	False	NA	NA	False	NA	NA	NA	85820961	85821441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85821000_85821400
ES_00049474	chr6	+	587	4	FSM	ENSMUSG00000054226.14	ENSMUST00000113751.8	692	4	13	92	-6	-92	multi-exon	FALSE	canonical	3	153	junction_1	26.1916017074176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCAGACAGCTGTGGAGT	3403	False	NA	NA	False	NA	NA	NA	85892713	85904498	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222
ES_00049476	chr6	+	318	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	-23	-85	-23	85	mono-exon	FALSE	NA	NA	NA	NA	NA	700	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGTAAATACACGTTACT	NA	False	NA	NA	False	AATAAA	-21	NA	86310989	86311307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86311000_86311300
ES_00049477	chr6	+	1271	1	FSM	ENSMUSG00000057497.9	ENSMUST00000203237.2	1306	1	166	-131	156	131	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCATAAGTGATCTGAAG	8851	False	NA	133	True	NA	NA	NA	86342861	86344132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86342900_86344100
ES_00049478	chr6	+	797	6	FSM	ENSMUSG00000071337.12	ENSMUST00000156762.8	797	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	74.1932611495141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGGTGTATATTCAT	9785	False	NA	NA	False	NA	NA	NA	86381304	86400845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86400587
ES_00049480	chr6	+	2823	11	NNC	ENSMUSG00000046679.17	novel	2630	11	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	7.68700201639105	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1402	False	NA	NA	False	AATAAA	-26	NA	86415304	86447370	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86415470_86415591_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ES_00049481	chr6	+	690	3	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1480	False	NA	NA	False	ATTAAA	-1	NA	86415382	86416470	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86415470_86415591_86415830_86416105
ES_00049482	chr6	+	463	4	NIC	ENSMUSG00000097048.8	novel	594	5	NA	NA	14	-1	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	40.4337592722825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTGTATTTTTAAATT	NA	False	NA	7	True	NA	NA	NA	86504314	86541429	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_86504416_86504872_86504957_86540413_86540520_86541257
ES_00049483	chr6	+	9973	17	NNC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	-161	4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	9.69213598749006	125	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGTTGTGTGTTTTTTCT	NA	False	NA	9	True	ATTAAA	-19	NA	86826337	86980209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_86826439_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940974_86941208_86942458_86942617_86944250_86944356_86972821
ES_00049484	chr6	+	1072	1	Intergenic	novelGene_3480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	992	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTTTTTTTTTTAAAGA	149	False	NA	NA	False	AATAAA	-24	NA	87009390	87010462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_87009400_87010500
ES_00049485	chr6	+	361	1	FSM	ENSMUSG00000029992.15	ENSMUST00000204872.2	2809	1	733	1715	692	-1715	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTAAAGATCCCACATCA	NA	False	NA	NA	False	NA	NA	NA	87020564	87020925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_87020600_87020900
ES_00049487	chr6	+	1354	1	FSM	ENSMUSG00000092552.2	ENSMUST00000174329.2	585	1	3	-772	3	772	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCATCACATGTTTGCC	NA	False	NA	NA	False	AGTAAA	-10	NA	90212673	90214027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90212700_90214000
ES_00049488	chr6	+	1372	1	FSM	ENSMUSG00000107451.2	ENSMUST00000205064.2	1221	1	-179	28	-179	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	327	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGTTGCAATAAAATAGTA	NA	False	NA	NA	False	AATATA	-28	NA	90455268	90456640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_90455300_90456600
ES_00049490	chr6	+	559	2	FSM	ENSMUSG00000030096.9	ENSMUST00000205477.2	559	2	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCGGTGGTTGAGATGG	399	False	NA	NA	False	NA	NA	NA	91725336	91727151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_91725452_91726707
ES_00049491	chr6	+	2353	1	FSM	ENSMUSG00000034063.9	ENSMUST00000205974.2	1904	1	437	-886	437	886	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAGAAAAGACCTGG	2165	False	NA	NA	False	NA	NA	NA	91880226	91882579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_91880200_91882600
ES_00049493	chr6	+	909	1	FSM	ENSMUSG00000005893.15	ENSMUST00000204661.2	3618	1	-549	3258	52	-857	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACTTCAGGTACCCAGG	NA	False	NA	NA	False	NA	NA	NA	92115047	92115956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_92115000_92116000
ES_00049494	chr6	+	223	1	FSM	ENSMUSG00000108269.2	ENSMUST00000203663.2	1032	1	837	-28	-66	28	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACATGAACTGCAAACTAA	NA	False	NA	NA	False	NA	NA	NA	100225026	100225249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_100225000_100225200
ES_00049495	chr6	+	3700	2	FSM	ENSMUSG00000034648.10	ENSMUST00000049285.10	3700	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGCAATAATGTATCAT	NA	False	NA	NA	False	AATAAA	-25	NA	107506728	107547175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_107507205_107543951
ES_00049496	chr6	+	9759	59	NNC	ENSMUSG00000030102.12	novel	9870	62	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	14.5585047121273	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTGGTGGCTTTCATTT	NA	False	NA	13	True	AATAAA	-24	NA	108190056	108528079	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365300_108366327_108366516_108368791_108368931_108369491_108369545_108370863_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ES_00049497	chr6	+	1126	2	Intergenic	novelGene_3503	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTAGTGGCTTCCCA	NA	False	NA	NA	False	NA	NA	NA	112679514	112681634	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_112679839_112680832
ES_00049498	chr6	+	6957	23	NIC	ENSMUSG00000034269.13	novel	6755	22	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	21.4531971841376	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATCATAATGTTAACAA	7855	False	NA	12	True	NA	NA	NA	113054337	113130385	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00049499	chr6	+	7207	24	NIC	ENSMUSG00000034269.13	novel	6527	22	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	24.9546280148047	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATCATAATGTTAACAA	7855	False	NA	12	True	NA	NA	NA	113054337	113130385	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086384_113086578_113086845_113086952_113087277_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00049500	chr6	+	6930	23	NIC	ENSMUSG00000034269.13	novel	6755	22	NA	NA	12	5	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	24.895484007485	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAATGTTAACAATGTGT	7855	False	NA	17	True	NA	NA	NA	113054337	113130390	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113054674_113081895_113082083_113086384_113086578_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ES_00049502	chr6	+	388	4	FSM	ENSMUSG00000030270.12	ENSMUST00000128148.8	449	4	7	54	7	24	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGCTCCTCCTAGAATC	NA	False	NA	NA	False	NA	NA	NA	113259306	113260414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113259503_113260007_113260049_113260156_113260204_113260310
ES_00049503	chr6	+	4582	14	NNC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_13	50.4892044234568	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAAGAATGG	281	False	NA	NA	False	NA	NA	NA	113284146	113301680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300947
ES_00049504	chr6	+	4710	14	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_7	44.7021702344376	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTCTATTTAGAATTC	281	False	NA	8	True	AATATA	-15	NA	113284146	113301801	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ES_00049505	chr6	+	4456	14	NIC	ENSMUSG00000001632.17	novel	4603	14	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_7	58.3643929709194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTCTATTTAGAATTC	321	False	NA	8	True	AATATA	-15	NA	113284186	113301801	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ES_00049506	chr6	+	2745	13	FSM	ENSMUSG00000030276.20	ENSMUST00000203524.3	2745	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	7.75492674942123	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTAAAGTTCTCTGGGC	NA	False	NA	NA	False	ATTAAA	-12	NA	113370120	113391544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749_113390021_113390582_113390660_113390823
ES_00049507	chr6	+	925	1	FSM	ENSMUSG00000107944.2	ENSMUST00000204498.2	3111	1	15	2171	15	-2171	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAGAAGGGGACAAATC	375	False	NA	NA	False	NA	NA	NA	113393447	113394372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113393400_113394400
ES_00049508	chr6	+	5665	1	FSM	ENSMUSG00000051256.11	ENSMUST00000204287.2	2414	1	-29	-3222	-3	1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGTTGGAGATTTGATT	NA	False	NA	34	True	AATAAA	-38	NA	113419526	113425191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113419500_113425200
ES_00049509	chr6	+	725	4	FSM	ENSMUSG00000056952.14	ENSMUST00000153661.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCACATGTGGATATATA	8742	False	NA	9	True	AATAAA	-15	NA	113681777	113688027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113681868_113684226_113684355_113687001_113687176_113687694
ES_00049510	chr6	+	2220	1	FSM	ENSMUSG00000108137.2	ENSMUST00000203364.2	929	1	-1483	192	-1483	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTGTACTTGTTTGG	2804	False	NA	NA	False	NA	NA	NA	113700700	113702920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_113700700_113702900
ES_00049512	chr6	+	4086	1	Intergenic	novelGene_3508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAAAAGATACCGAGAGC	8742	False	NA	NA	False	NA	NA	NA	115801689	115805775	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_115801700_115805800
ES_00049513	chr6	+	3126	10	FSM	ENSMUSG00000042213.18	ENSMUST00000036503.14	3123	10	0	-3	0	0	multi-exon	FALSE	canonical	2	5	junction_4	4.89393678789894	2051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTATTTGATTATTTA	NA	False	NA	NA	False	AATAAA	-16	NA	116241223	116307263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_116241274_116250533_116250834_116261700_116261777_116262814_116262883_116264942_116265130_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
ES_00049514	chr6	+	2816	4	NNC	ENSMUSG00000042097.18	novel	2812	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	12.7627931460511	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTCCAATGTGTTCATTT	NA	False	NA	12	True	TTTAAA	-6	NA	117840037	117849726	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_117840104_117843355_117843536_117846178_117846239_117847216
ES_00049516	chr6	+	1922	1	FSM	ENSMUSG00000042079.14	ENSMUST00000180341.2	1922	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	204	False	NA	NA	False	AATAAA	-17	NA	117900661	117902583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117900700_117902600
ES_00049517	chr6	+	900	1	FSM	ENSMUSG00000082791.4	ENSMUST00000118257.2	786	1	13	-127	13	127	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTATTTTACCATCCC	NA	False	NA	NA	False	NA	NA	NA	117974180	117975080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_117974200_117975100
ES_00049518	chr6	+	3175	13	NNC	ENSMUSG00000030134.12	novel	2227	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	9.46484724300046	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTTGTCTCTCTCTCT	NA	False	NA	1	True	NA	NA	NA	118043379	118068505	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066420_118066469_118066776
ES_00049519	chr6	+	1765	9	FSM	ENSMUSG00000041477.15	ENSMUST00000073909.6	1748	9	-17	0	-17	0	multi-exon	FALSE	canonical	0	0	junction_7	19.2447233027654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATGTTTTATACTGT	NA	False	NA	-12	True	NA	NA	NA	119152231	119197146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194862_119194941_119196963
ES_00049520	chr6	+	289	2	NNC	ENSMUSG00000030180.16	novel	2716	3	NA	NA	-12881	-7584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTGTTTTAAATGAAAAA	NA	False	NA	NA	False	NA	NA	NA	120328203	120383209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_120328415_120383131
ES_00049521	chr6	+	8286	28	NIC	ENSMUSG00000030180.16	novel	10944	28	NA	NA	-47	-2318	combination_of_known_junctions	FALSE	canonical	1	4	junction_4	12.5648932828686	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTTGCACTTCTTCGTT	NA	False	NA	14	True	ATTAAA	-29	NA	120341371	120419217	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415404_120415487_120415947
ES_00049522	chr6	+	245	1	Intergenic	novelGene_3524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTGGGATTTGAACTCT	NA	False	NA	NA	False	NA	NA	NA	120360353	120360598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120360400_120360600
ES_00049523	chr6	+	9253	18	NIC	ENSMUSG00000071226.12	novel	4849	19	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	29.3618399808122	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTAAATTAGTAAGGCTT	NA	False	NA	-7	True	TATAAA	-6	NA	120643329	120748140	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
ES_00049524	chr6	+	1070	1	FSM	ENSMUSG00000071226.12	ENSMUST00000204732.2	3996	1	-534	3460	-534	-3460	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATAACTGCCTCGGATC	NA	False	NA	NA	False	NA	NA	NA	120712182	120713252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_120712200_120713300
ES_00049525	chr6	+	3758	4	FSM	ENSMUSG00000067825.12	ENSMUST00000118234.8	3778	4	20	0	20	0	multi-exon	FALSE	canonical	3	4	junction_2	19.1543438647449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATTTCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	121160645	121173144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_121161442_121162668_121162810_121167059_121167207_121170470
ES_00049537	chr6	+	3006	2	Fusion	ENSMUSG00000107761.2_ENSMUSG00000067714.14	novel	1393	2	NA	NA	357	22	multi-exon	FALSE	canonical	3	12	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCCATTTATCTGTGAG	5395	False	NA	NA	False	NA	NA	NA	125045239	125061014	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_+_125045331_125058099
ES_00049540	chr6	+	3146	4	Fusion	ENSMUSG00000030335.7_ENSMUSG00000093157.3	novel	855	3	NA	NA	0	0	multi-exon	TRUE	canonical	1	3	junction_3	330.879971523747	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGCTGCCTTGCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	125168763	125172841	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_+_125169172_125169478_125169590_125170185_125171638_125171666
ES_00049552	chr6	+	460	2	FSM	ENSMUSG00000001517.15	ENSMUST00000136395.2	460	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGTTCTGATTGGTGAA	NA	False	NA	NA	False	AATACA	-18	NA	128346402	128348333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_128346449_128347919
ES_00049559	chr6	+	5545	8	FSM	ENSMUSG00000030199.17	ENSMUST00000081028.13	5545	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	18.3358687176979	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAAGTCCCAAGTCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	134012662	134247118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_+_134013102_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
ES_00049562	chr6	+	7909	16	NNC	ENSMUSG00000030213.13	novel	3018	9	NA	NA	30	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	69.8555334641112	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGAGTACCCTGACTC	8880	False	NA	16	True	AATAAA	-16	NA	136509954	136587843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_136510052_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584426
ES_00049563	chr6	+	8013	17	NNC	ENSMUSG00000030213.13	novel	3226	5	NA	NA	3	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	85.1513358673838	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGAGTACCCTGACTC	NA	False	NA	16	True	AATAAA	-16	NA	136531004	136587843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_136531083_136532415_136532539_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584426
ES_00049572	chr6	+	2285	13	NIC	ENSMUSG00000030301.18	novel	2459	13	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	22.1514672200286	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	147377378	147534110	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_+_147377394_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ES_00049577	chr6	+	6176	7	NNC	ENSMUSG00000032712.17	novel	5356	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_6	85.5427118786607	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTCTTCATGGTTCT	NA	False	NA	12	True	AATAAA	-24	NA	149210954	149237161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902_149231283_149232923_149233005_149236093
ES_00049581	chr6	-	1575	1	FSM	ENSMUSG00000106734.4	ENSMUST00000202514.2	1575	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAGAAATCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	3346098	3344523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_3344500_3346100
ES_00049582	chr6	-	456	2	Intergenic	novelGene_3355	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGTTTGTTGCATCTTT	NA	False	NA	NA	False	NA	NA	NA	3425558	3404756	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_3405056_3425401
ES_00049584	chr6	-	828	1	FSM	ENSMUSG00000097900.2	ENSMUST00000181363.2	964	1	140	-4	140	4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACATCCAGGAAACAAAGC	5015	False	NA	NA	False	NA	NA	NA	6352127	6351299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_6351300_6352100
ES_00049585	chr6	-	682	2	FSM	ENSMUSG00000012483.5	ENSMUST00000159594.2	682	2	0	0	0	0	multi-exon	FALSE	canonical	3	1539	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTAAAACATCTTTGATA	-15	True	NA	NA	False	TTTAAA	-16	NA	8259140	8257220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_8257762_8258999
ES_00049586	chr6	-	1757	14	NIC	ENSMUSG00000062995.13	novel	1876	15	NA	NA	16	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	19.3962114277887	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATTCACTCCTGTTTGG	10	True	NA	-2	True	AATAAA	-34	NA	8778468	8630527	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778372
ES_00049588	chr6	-	1606	1	FSM	ENSMUSG00000052419.8	ENSMUST00000185219.2	1606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTTCTCCTTGTGAG	1	True	NA	NA	False	AATAGA	-32	NA	13871464	13869858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_13869900_13871500
ES_00049590	chr6	-	2841	1	FSM	ENSMUSG00000106946.2	ENSMUST00000200848.2	2852	1	-5	16	-5	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGCTTAATTTACCAAAA	4626	False	NA	NA	False	NA	NA	NA	24660373	24657532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_24657500_24660400
ES_00049592	chr6	-	486	1	FSM	ENSMUSG00000106904.2	ENSMUST00000201829.2	1535	1	283	766	283	-766	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGGGAGAATAATTTGA	6995	False	NA	NA	False	AATAAA	-35	NA	29547854	29547368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_29547400_29547900
ES_00049594	chr6	-	1548	9	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	0	33877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.955521368006	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGATTCTATTTCATAAT	NA	False	NA	NA	False	NA	NA	NA	33037172	32734033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_32734063_32769159_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ES_00049595	chr6	-	1038	1	FSM	ENSMUSG00000107035.2	ENSMUST00000201305.2	957	1	163	-244	163	244	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTTCATTATTATATG	NA	False	NA	NA	False	TTTAAA	-5	NA	37663967	37662929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_37662900_37664000
ES_00049596	chr6	-	11175	20	NIC	ENSMUSG00000063455.17	novel	10968	20	NA	NA	-258	-3	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	11.6891881289324	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAAGCTGTTCTTTGTGGT	NA	False	NA	-3	True	NA	NA	NA	38231202	38100113	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_38105463_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318_38174025_38230802
ES_00049597	chr6	-	652	2	FSM	ENSMUSG00000038507.7	ENSMUST00000129916.2	1009	2	674	-317	674	317	multi-exon	FALSE	canonical	3	23	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGCTGTGCCTTCCTGA	232	False	NA	NA	False	AAAAAG	-32	NA	39067353	39065632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39066064_39067132
ES_00049598	chr6	-	3197	16	NNC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	2311	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	87.3160288199646	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39352241	39312918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39351928
ES_00049599	chr6	-	3369	18	NNC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	2279	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_17	102.836249045009	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39352273	39312918	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39349012_39349072_39349780_39349862_39351928
ES_00049600	chr6	-	2934	16	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_15	85.4180308834148	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354602	39312918	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39354552
ES_00049601	chr6	-	2844	8	FSM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	148	0	129	0	multi-exon	FALSE	canonical	3	27	junction_7	1191.73940789358	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39396562	39374737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396400
ES_00049602	chr6	-	383	1	FSM	ENSMUSG00000038456.10	ENSMUST00000202707.2	1878	1	961	534	961	-534	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATGTGGCTGCTGGGAA	NA	False	NA	NA	False	NA	NA	NA	39462429	39462046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_39462000_39462400
ES_00049603	chr6	-	9562	20	NIC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	11	1	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	7.35788720728475	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGATTATTTTTCTAGC	6452	False	NA	-5	True	AATAAA	-21	NA	39702386	39580169	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_39587339_39591065_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ES_00049604	chr6	-	3287	9	FSM	ENSMUSG00000036667.15	ENSMUST00000121083.8	3342	9	55	0	-24	0	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGCTCCAAAGGATATT	NA	False	NA	NA	False	AATAAA	-36	NA	42669966	42646875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42669866
ES_00049605	chr6	-	1441	1	FSM	ENSMUSG00000079575.4	ENSMUST00000182751.2	1441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTACCGTCTTTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	46507728	46506287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_46506300_46507700
ES_00049607	chr6	-	379	1	FSM	ENSMUSG00000097255.2	ENSMUST00000180629.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCTGAATGTCAAATAAA	NA	False	NA	NA	False	ATTAAA	-35	NA	47763308	47762929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47762900_47763300
ES_00049608	chr6	-	682	1	FSM	ENSMUSG00000094557.2	ENSMUST00000080603.4	333	1	-292	-57	-292	57	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAGAAAAAAAAAAG	8146	False	NA	NA	False	AATAAA	-38	NA	47792858	47792176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_47792200_47792900
ES_00049609	chr6	-	3746	7	NNC	ENSMUSG00000057691.9	novel	3651	7	NA	NA	-36	14	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	45.192182214774	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATTCTTAGATATTCAT	1014	False	NA	16	True	AATAAA	-31	NA	48063563	48039314	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_48041887_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060154_48060239_48060540_48063248
ES_00049610	chr6	-	1384	1	FSM	ENSMUSG00000107990.2	ENSMUST00000204877.2	601	1	-274	-509	-274	509	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAAGGAAAA	NA	False	NA	NA	False	AGTAAA	-20	NA	49058270	49056886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_49056900_49058300
ES_00049611	chr6	-	2102	2	FSM	ENSMUSG00000029822.16	ENSMUST00000141466.2	3018	2	916	0	916	0	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	50276418	50272162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50274142_50276295
ES_00049612	chr6	-	1775	1	FSM	ENSMUSG00000107821.2	ENSMUST00000164674.3	2044	1	761	-492	761	492	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGACATCTGTGTTTT	NA	False	NA	NA	False	AATGAA	-5	NA	50598103	50596328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_50596300_50598100
ES_00049613	chr6	-	3645	4	FSM	ENSMUSG00000004980.17	ENSMUST00000205204.2	3645	4	0	0	0	0	multi-exon	FALSE	canonical	3	6516	junction_1	740.728170263709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATAGCAGGGTCCT	NA	False	NA	NA	False	AAAAAG	-5	NA	51446864	51442797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_51443385_51443474_51443686_51443885_51444033_51444164
ES_00049614	chr6	-	1328	2	FSM	ENSMUSG00000014704.11	ENSMUST00000014848.11	1775	2	14	433	14	-433	multi-exon	FALSE	canonical	0	0	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTTTGACCAGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	52141797	52139829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52140606_52141245
ES_00049615	chr6	-	365	1	FSM	ENSMUSG00000065443.3	ENSMUST00000083509.3	85	1	-138	-142	-138	142	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGCCTCACTGTCGCCG	6048	False	NA	NA	False	NA	NA	NA	52207283	52206918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_52206900_52207300
ES_00049617	chr6	-	366	4	FSM	ENSMUSG00000091625.9	ENSMUST00000177144.2	366	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	746.5458235545	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTGTCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	56681641	56678107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_56678275_56679080_56679154_56680302_56680395_56681607
ES_00049621	chr6	-	4269	18	FSM	ENSMUSG00000037709.14	ENSMUST00000089860.12	5786	18	68	1449	23	-1449	multi-exon	FALSE	canonical	1	1	junction_14	2.83331637148054	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCATGGTTTCCTTCATA	NA	False	NA	NA	False	AATAAA	-35	NA	59001466	58910523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_58912697_58916280_58916383_58917105_58917303_58921105_58921190_58923024_58923121_58930434_58930519_58931186_58931408_58932200_58932283_58933021_58933161_58933638_58933844_58942045_58942194_58950139_58950183_58951015_58951093_58960873_58961061_58964140_58964318_58966728_58966771_58980449_58980492_59001296
ES_00049622	chr6	-	3891	1	FSM	ENSMUSG00000029919.6	ENSMUST00000205250.2	3891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGTGGTGGCGCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	65099911	65096020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_65096000_65099900
ES_00049625	chr6	-	214	3	Intergenic	novelGene_3457	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	32	301	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGATATTCCTCATCAAAA	NA	False	NA	NA	False	NA	NA	NA	67238085	67196101	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_67196129_67204563_67204701_67238035
ES_00049626	chr6	-	4959	28	NIC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	43	junction_18	130.557000254681	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATTTCTTAGTGACTA	NA	False	NA	1	True	AATAAA	-23	NA	71609974	71565950	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
ES_00049630	chr6	-	625	3	FSM	ENSMUSG00000073002.10	ENSMUST00000101285.10	623	3	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_2	4	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	9583	False	NA	NA	False	AGTAAA	-23	NA	72357405	72346008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72346454_72347176_72347315_72357363
ES_00049631	chr6	-	1805	2	FSM	ENSMUSG00000050732.10	ENSMUST00000142613.2	2076	2	276	-5	276	0	multi-exon	FALSE	canonical	3	289	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGCTTTACTCCTGTG	9161	False	NA	-18	True	AATAAA	-25	NA	72366618	72362205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72362637_72365244
ES_00049633	chr6	-	2164	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTCCAAGATGAAGTT	NA	False	NA	1	True	AATAAA	-23	NA	72575325	72542904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
ES_00049634	chr6	-	3073	13	NNC	ENSMUSG00000055799.14	novel	1888	13	NA	NA	21	7	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	133.076706159351	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGATGTTTCTTTAGGCC	4844	False	NA	-1	True	AATAAA	-21	NA	72766216	72603353	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610305_72611082_72611216_72625783_72625826_72626102_72626187_72765193_72765322_72765544_72765609_72765692
ES_00049635	chr6	-	207	2	Intergenic	novelGene_3463	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCCCTTTCAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	72733609	72692657	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_72692701_72733445
ES_00049636	chr6	-	513	4	NNC	ENSMUSG00000079523.9	novel	623	4	NA	NA	0	82351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12735.8096283232	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATATATATATATATAC	NA	False	NA	NA	False	NA	NA	NA	72935382	72851978	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_72852012_72934330_72934636_72934895_72935008_72935319
ES_00049637	chr6	-	513	2	Genic_Genomic	ENSMUSG00000107951.2	novel	1942	1	NA	NA	1554	2066	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAAAAGCAGACACCAACC	NA	False	NA	NA	False	NA	NA	NA	75273488	75271034	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_75271077_75273017
ES_00049638	chr6	-	5546	19	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	0	56116	intron_retention	FALSE	non_canonical	0	0	junction_1	131.766125117175	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAAAAAACAAAA	9398	False	NA	NA	False	NA	NA	NA	82751435	82645889	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_82645923_82702005_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
ES_00049640	chr6	-	600	3	FSM	ENSMUSG00000087578.2	ENSMUST00000138422.2	600	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGCACATGACAAGTCA	NA	False	NA	NA	False	NA	NA	NA	83085968	83083847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83084172_83084723_83084896_83085864
ES_00049645	chr6	-	1503	1	FSM	ENSMUSG00000108484.2	ENSMUST00000206215.2	1503	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCCAAAAACATCTAAGTC	9816	False	NA	NA	False	NA	NA	NA	83527343	83525840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83525800_83527300
ES_00049646	chr6	-	1439	6	FSM	ENSMUSG00000034783.8	ENSMUST00000037882.8	1522	6	26	57	26	-57	multi-exon	FALSE	canonical	1	2	junction_3	0.979795897113271	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGCTCAAAATATGTAAA	1290	False	NA	NA	False	NA	NA	NA	83654813	83648253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83648816_83649738_83649858_83651227_83651380_83652554_83652930_83654490_83654608_83654699
ES_00049647	chr6	-	3756	2	FSM	ENSMUSG00000085794.6	ENSMUST00000155159.4	4063	2	81	226	81	-226	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTCTCATAAACACATCT	NA	False	NA	NA	False	ACTAAA	-17	NA	83687833	83677364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_83681003_83687715
ES_00049648	chr6	-	3336	5	NNC	ENSMUSG00000045896.15	novel	3982	5	NA	NA	132	-657	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	33.8701564802999	252	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCCAGGTTATTGTTA	NA	False	NA	NA	False	AATAAA	-22	NA	83808550	83783039	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808432
ES_00049649	chr6	-	5395	22	NNC	ENSMUSG00000033769.17	novel	5439	22	NA	NA	0	-3	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_8	53.0221363090503	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTGTTGTCTTGTGA	NA	False	NA	-5	True	ATTAAA	-27	NA	85046457	84595471	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828940_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
ES_00049650	chr6	-	436	1	FSM	ENSMUSG00000089634.2	ENSMUST00000162660.2	699	1	183	80	183	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGTACTTCAAAAGTATG	5494	False	NA	NA	False	NA	NA	NA	85910178	85909742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_85909700_85910200
ES_00049651	chr6	-	731	2	NIC	ENSMUSG00000101655.2	novel	775	2	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	7022	False	NA	NA	False	AATAAA	-19	NA	86465183	86460357	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_86460682_86464776
ES_00049652	chr6	-	1774	3	Genic_Genomic	ENSMUSG00000051695.7	novel	1830	1	NA	NA	104	31870	multi-exon	FALSE	non_canonical	0	0	junction_1	0	389	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGGGGCTAGGATCATA	NA	False	NA	NA	False	NA	NA	NA	86503199	86469603	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_86469629_86491725_86491751_86501475
ES_00049653	chr6	-	1773	3	Genic_Genomic	ENSMUSG00000051695.7	novel	1830	1	NA	NA	104	31870	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGGGGCTAGGATCATA	NA	False	NA	NA	False	NA	NA	NA	86503199	86469603	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_86469629_86491725_86491750_86501475
ES_00049654	chr6	-	263	2	FSM	ENSMUSG00000001158.14	ENSMUST00000133404.2	372	2	0	109	0	-109	multi-exon	FALSE	canonical	3	1763	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGAGCCCAGGAGATG	7651	False	NA	NA	False	AAGAAA	-36	NA	86661499	86659766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_86659959_86661428
ES_00049655	chr6	-	2705	11	NNC	ENSMUSG00000030051.11	novel	3132	10	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	24.0674053441579	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGCTTATTTGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	87649111	87605405	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_87605573_87605981_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648971
ES_00049656	chr6	-	1219	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	11	36432	11	-36432	5prime_fragment	TRUE	canonical	3	8	junction_6	5.95585612840188	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	87699772	87689006	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
ES_00049658	chr6	-	660	1	FSM	ENSMUSG00000108042.2	ENSMUST00000205226.2	2593	1	-134	2067	-134	-2067	mono-exon	FALSE	NA	NA	NA	NA	NA	391	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTCCAGTTGTTAAACT	1844	False	NA	NA	False	CATAAA	-2	NA	87809982	87809322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_87809300_87810000
ES_00049659	chr6	-	2019	6	NIC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGATCAAATGACTT	NA	False	NA	-8	True	ATTAAA	-16	NA	88423521	88234315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ES_00049662	chr6	-	207	3	FSM	ENSMUSG00000048794.15	ENSMUST00000127508.4	417	3	0	210	0	-210	multi-exon	FALSE	canonical	3	4	junction_1	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGAGAAGCAAAGCTTC	NA	False	NA	NA	False	NA	NA	NA	90405417	90398338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_90398383_90404419_90404526_90405360
ES_00049663	chr6	-	2541	14	FSM	ENSMUSG00000030022.15	ENSMUST00000125490.8	2541	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	6.61985537660005	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAATAAAAATAGA	NA	False	NA	NA	False	AAGAAA	-17	NA	92837126	92769990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080
ES_00049664	chr6	-	5150	23	NIC	ENSMUSG00000045095.17	novel	7929	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	7.90386452187569	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTTTTTTGAAAATTAT	NA	False	NA	-1	True	ATTAAA	-19	NA	94260876	93655016	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671190_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93920184_93920302_94259990
ES_00049665	chr6	-	3818	18	NIC	ENSMUSG00000030029.15	novel	4951	19	NA	NA	-6	-856	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	29.2854936514361	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTTCATATATATTATAT	6746	False	NA	NA	False	AAAAAG	-33	NA	94677132	94582516	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_94582985_94583083_94583345_94585020_94585147_94585689_94586110_94586597_94586880_94588352_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349_94603494_94604940_94605085_94607082_94607221_94631827_94631903_94640907_94640980_94676442
ES_00049666	chr6	-	3917	19	NIC	ENSMUSG00000035245.13	novel	4424	18	NA	NA	6	3	combination_of_known_junctions	FALSE	canonical	3	4	junction_17	11.1428712748068	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACATCTTCAGGATTTT	NA	False	NA	-3	True	AATAAA	-25	NA	97125815	97086981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97124970_97125151_97125220_97125792
ES_00049667	chr6	-	2479	18	NNC	ENSMUSG00000030061.17	novel	2561	18	NA	NA	2	-29	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	172.010340077059	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACCTGATTTTAATTCT	NA	False	NA	NA	False	ACTAAA	-36	NA	97182518	97160659	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182262_97182309_97182493
ES_00049668	chr6	-	2173	1	FSM	ENSMUSG00000030064.17	ENSMUST00000203486.2	4230	1	2222	-165	2222	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	97266000	97263827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_97263800_97266000
ES_00049669	chr6	-	4261	20	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_19	20.6139828293477	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	7396	False	NA	-1	True	AATAAA	-19	NA	97373715	97263827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373639
ES_00049671	chr6	-	2468	15	FSM	ENSMUSG00000030067.18	ENSMUST00000177437.8	2468	15	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_13	6.47443953921409	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTTTAATGTATTGCT	NA	False	NA	NA	False	NA	NA	NA	99005219	98906426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_98907196_98912234_98912402_98916679_98916750_98918496_98918619_98921579_98921682_98922307_98922388_98922494_98922697_98931281_98931366_98942987_98943076_98955093_98955199_98980160_98980366_98986864_98987019_98992384_98992472_98993488_98993627_99005124
ES_00049672	chr6	-	1450	3	FSM	ENSMUSG00000030069.16	ENSMUST00000101120.11	1450	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTGTCAACAGTTTTTAT	8817	False	NA	NA	False	NA	NA	NA	99703353	99688259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_99689419_99699469_99699596_99703188
ES_00049674	chr6	-	532	2	FSM	ENSMUSG00000072872.4	ENSMUST00000203410.2	680	2	148	0	148	0	multi-exon	FALSE	canonical	3	298	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCCTGACAGTTACTCTT	NA	False	NA	NA	False	NA	NA	NA	100209944	100208971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100209387_100209827
ES_00049675	chr6	-	750	5	FSM	ENSMUSG00000035378.18	ENSMUST00000162776.2	750	5	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	89.0796693976802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAGGTAGTACTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	100648094	100639799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_100639986_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ES_00049676	chr6	-	561	2	Intergenic	novelGene_3500	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCGCAAACCAAAAAAATAAG	NA	False	NA	NA	False	AATAAA	-1	NA	108189874	108189232	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_108189735_108189815
ES_00049677	chr6	-	765	2	FSM	ENSMUSG00000044574.6	ENSMUST00000053559.5	2894	2	927	1202	926	-1202	multi-exon	FALSE	canonical	1	1	junction_1	0	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGACCACTATCAGATAAAA	6432	False	NA	NA	False	NA	NA	NA	112264871	112264019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_112264660_112264746
ES_00049678	chr6	-	666	3	FSM	ENSMUSG00000034387.14	ENSMUST00000123254.2	844	3	0	178	0	-178	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGTGGGGGCTTTGCCTC	309	False	NA	NA	False	AATAAA	-17	NA	112352681	112346413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_112346804_112351739_112351848_112352513
ES_00049679	chr6	-	1836	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	204	combination_of_known_junctions	FALSE	canonical	3	29	junction_3	87.4748773458224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACACACAAACAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	112673605	112597587	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_112597866_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ES_00049680	chr6	-	3424	4	FSM	ENSMUSG00000045009.10	ENSMUST00000204134.3	3424	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTCGCTCTGGTCAA	4285	False	NA	1	True	AATAAA	-18	NA	113478892	113470885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_113473027_113473892_113474049_113474232_113475278_113478810
ES_00049681	chr6	-	4092	22	NIC	ENSMUSG00000030302.18	novel	7326	24	NA	NA	37	-6449	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	9.63435839472482	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATTGACCAAGAGTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	113868294	113732031	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_113732350_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ES_00049682	chr6	-	3503	3	FSM	ENSMUSG00000030316.14	ENSMUST00000137654.2	575	3	-2740	-188	1098	181	multi-exon	FALSE	canonical	3	466	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGATGCTTGGCTATGGTT	NA	False	NA	NA	False	NA	NA	NA	114992238	114981160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_114981481_114987767_114987831_114989118
ES_00049684	chr6	-	581	1	FSM	ENSMUSG00000081805.2	ENSMUST00000119165.2	810	1	-7	236	-7	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTCTCAGTCCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	115616027	115615446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115615400_115616000
ES_00049685	chr6	-	1240	11	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-985	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_9	20.928688444334	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737217	115706091	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115737065
ES_00049686	chr6	-	1422	13	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-907	-1	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_9	21.6260837878706	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCGACTAAATATTCCTTT	NA	False	NA	NA	False	AATAAA	-29	NA	115737139	115706092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115736555_115736685_115737065
ES_00049687	chr6	-	1272	11	NNC	ENSMUSG00000059900.15	novel	843	11	NA	NA	-964	-1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_10	21.9501708421597	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCGACTAAATATTCCTTT	NA	False	NA	NA	False	AATAAA	-29	NA	115737196	115706092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115736555_115736685_115737065
ES_00049688	chr6	-	2574	9	FSM	ENSMUSG00000030321.16	ENSMUST00000184428.6	2384	9	-34	-156	-34	-11	multi-exon	FALSE	canonical	1	3	junction_5	2.36841191518705	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAACTAGCCTTGCTCGT	NA	False	NA	NA	False	AATAAA	-26	NA	115815407	115787700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_115788195_115789154_115789212_115791461_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
ES_00049689	chr6	-	534	2	Genic_Genomic	ENSMUSG00000082474.4	novel	441	1	NA	NA	-12014	0	multi-exon	FALSE	canonical	1	1	junction_1	0	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	8630	False	NA	NA	False	NA	NA	NA	116184833	116172378	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_116172856_116184776
ES_00049690	chr6	-	403	2	Antisense	novelGene_ENSMUSG00000082791.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	74	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTGCCCAGGAGTAGCG	NA	False	NA	NA	False	NA	NA	NA	117986686	117963415	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr6_-_117963768_117986635
ES_00049692	chr6	-	7410	34	NNC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	14.8227358683406	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAATCCTATATTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	118539234	118478268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118517270_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ES_00049693	chr6	-	3420	5	FSM	ENSMUSG00000055003.15	ENSMUST00000112756.8	3569	5	149	0	149	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTGCTTCATTGGGTG	6570	False	NA	0	True	AATAAA	-18	NA	119307569	119292093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119294472_119297381_119297973_119300609_119300739_119301161_119301370_119307455
ES_00049694	chr6	-	2337	5	FSM	ENSMUSG00000030170.15	ENSMUST00000119369.2	2339	5	4	-2	4	-1	multi-exon	FALSE	canonical	0	0	junction_4	5.21416340365355	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTCCCTCTCCTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	119521275	119409492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119520941
ES_00049695	chr6	-	223	2	Intergenic	novelGene_3517	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACAGGGTCCCTTGTTG	2454	False	NA	NA	False	AATATA	-28	NA	119541839	119541459	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_119541650_119541806
ES_00049696	chr6	-	8668	20	NNC	ENSMUSG00000030172.16	novel	8760	21	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	7	junction_19	35.7214523873935	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTGCAGCCTTCTTG	NA	False	NA	NA	False	TATAAA	-14	NA	119825083	119547758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119754948_119755033_119756437_119756594_119760349_119760425_119773867_119774285_119801346_119802171_119817033_119817123_119824837
ES_00049697	chr6	-	2935	2	FSM	ENSMUSG00000045962.17	ENSMUST00000159903.2	2934	2	0	-1	0	1	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTTGTTCTTTCTGAC	NA	False	NA	0	True	AATAAA	-22	NA	119904222	119900928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_119903649_119904007
ES_00049699	chr6	-	224	2	Intergenic	novelGene_3521	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	509	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTAAAGATCTTACTGT	NA	False	NA	NA	False	NA	NA	NA	120263671	120245369	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_120245561_120263638
ES_00049700	chr6	-	203	1	Intergenic	novelGene_3527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTGAAGACCAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	120534396	120534193	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_-_120534200_120534400
ES_00049702	chr6	-	731	4	FSM	ENSMUSG00000051586.18	ENSMUST00000142924.2	731	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	11.2644968324772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGAGCTGGGCGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	120934684	120927643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_120928145_120928261_120928356_120929335_120929447_120934659
ES_00049703	chr6	-	7116	19	NIC	ENSMUSG00000051586.18	novel	9204	32	NA	NA	-62	4	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	14.3922132581871	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	121087116	120974272	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
ES_00049705	chr6	-	1471	3	Genic_Genomic	ENSMUSG00000080932.4	novel	615	1	NA	NA	-8418	74	multi-exon	FALSE	canonical	1	1	junction_2	5	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGGTTTCTCTGTGTAGC	NA	False	NA	NA	False	AATAAA	-40	NA	122684405	122675298	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr6_-_122676037_122683472_122684161_122684360
ES_00049714	chr6	-	599	2	FSM	ENSMUSG00000030122.13	ENSMUST00000203422.2	585	2	0	-14	0	7	multi-exon	FALSE	canonical	1	28	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTCCCGCAGTCCGG	NA	False	NA	1	True	AATAAA	-33	NA	124891637	124890636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_124891196_124891597
ES_00049717	chr6	-	1843	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942371	124935778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
ES_00049718	chr6	-	1224	6	NIC	ENSMUSG00000057666.19	novel	1273	7	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGGTTTTAATGCGG	NA	False	NA	-13	True	AATAAA	-17	NA	125141879	125138813	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
ES_00049720	chr6	-	881	3	FSM	ENSMUSG00000038252.14	ENSMUST00000188119.2	894	3	25	-12	25	12	multi-exon	FALSE	canonical	3	659	junction_1	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGTCTGTCCCATCCTT	NA	False	NA	3	True	AATAAA	-32	NA	125146222	125144957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_125145283_125145552_125145712_125145825
ES_00049723	chr6	-	1528	6	Fusion	ENSMUSG00000107995.2_ENSMUSG00000067702.6	novel	1509	5	NA	NA	0	-147	multi-exon	FALSE	non_canonical	0	0	junction_1	266.448794330168	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTTGGAAGAAATTCAGAA	3461	False	NA	NA	False	NA	NA	NA	125263005	125185476	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr6_-_125185507_125255247_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
ES_00049724	chr6	-	1539	6	NNC	ENSMUSG00000067702.6	novel	1509	5	NA	NA	0	42194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.448794330168	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGGAGATGGCACAGTA	3461	False	NA	NA	False	NA	NA	NA	125263005	125213042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr6_-_125213068_125255231_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
ES_00049750	chr6	-	1369	7	FSM	ENSMUSG00000068250.14	ENSMUST00000095319.10	1369	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	36.5087508535815	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090183	149059075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089733
ES_00049751	chr6	-	681	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	18	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTGTCCCATATTTATT	NA	False	NA	-2	True	TATAAA	-28	NA	149090144	149059076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
ES_00049752	chr6	+	1544	1	Intergenic	novelGene_3352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGAATGTGAAGACACTC	NA	False	NA	NA	False	NA	NA	NA	3161446	3162990	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_3161400_3163000
ES_00049754	chr6	+	507	1	Intergenic	novelGene_3357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTACGTAATTAGAACCTC	NA	False	NA	NA	False	NA	NA	NA	6350786	6351293	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_6350800_6351300
ES_00049755	chr6	+	216	1	Intergenic	novelGene_3360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATTTGAGAATCTTAAGA	2212	False	NA	NA	False	NA	NA	NA	11937400	11937616	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_11937400_11937600
ES_00049757	chr6	+	200	1	Intergenic	novelGene_3385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	386	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGTTTTTTTTTTTTTTT	1642	False	NA	NA	False	NA	NA	NA	30188250	30188450	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_30188200_30188400
ES_00049759	chr6	+	4620	1	Intergenic	novelGene_3388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATACTGTGCCAATATCC	NA	False	NA	NA	False	NA	NA	NA	35014589	35019209	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_35014600_35019200
ES_00049760	chr6	+	203	1	Intergenic	novelGene_3402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAGCTAGGTACAGT	NA	False	NA	NA	False	NA	NA	NA	38366271	38366474	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38366300_38366500
ES_00049761	chr6	+	202	1	Intergenic	novelGene_3403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTTTATGCTGTGATTA	NA	False	NA	NA	False	NA	NA	NA	38427786	38427988	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_38427800_38428000
ES_00049762	chr6	+	230	1	Intergenic	novelGene_3412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGAGCCACCATGTGGT	95	False	NA	NA	False	NA	NA	NA	39431135	39431365	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_39431100_39431400
ES_00049763	chr6	+	201	1	Intergenic	novelGene_3417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAGGTAAGTCAGAGGC	NA	False	NA	NA	False	NA	NA	NA	41245712	41245913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_41245700_41245900
ES_00049764	chr6	+	220	1	Intergenic	novelGene_3422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATGATAGACTGGTTAG	NA	False	NA	NA	False	NA	NA	NA	46729658	46729878	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_46729700_46729900
ES_00049765	chr6	+	351	1	Intergenic	novelGene_3424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGGTGGAGGAATGTC	NA	False	NA	NA	False	NA	NA	NA	47271053	47271404	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47271100_47271400
ES_00049766	chr6	+	220	1	Intergenic	novelGene_3428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	537	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATACTTTCTTAAATGGA	8679	False	NA	NA	False	NA	NA	NA	47603868	47604088	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_47603900_47604100
ES_00049767	chr6	+	207	1	Intergenic	novelGene_3430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATGAGCATCTTTGCAC	610	False	NA	NA	False	NA	NA	NA	48479314	48479521	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_48479300_48479500
ES_00049768	chr6	+	202	1	Intergenic	novelGene_3432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAATACTCGGGAACTTT	135	False	NA	NA	False	AAAAAG	-5	NA	48977387	48977589	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_48977400_48977600
ES_00049769	chr6	+	272	1	Intergenic	novelGene_3436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGACAAAGTCCAATGCC	NA	False	NA	NA	False	NA	NA	NA	49995285	49995557	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_49995300_49995600
ES_00049770	chr6	+	234	1	Intergenic	novelGene_3447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATTTCTCTACATACAC	NA	False	NA	NA	False	NA	NA	NA	54964050	54964284	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_54964000_54964300
ES_00049771	chr6	+	261	1	Intergenic	novelGene_3448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTTATTTCCAGACGTT	28	False	NA	NA	False	NA	NA	NA	56924138	56924399	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_56924100_56924400
ES_00049772	chr6	+	304	1	Intergenic	novelGene_3464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCTGGAGAGATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	72768678	72768982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_72768700_72769000
ES_00049773	chr6	+	287	1	Intergenic	novelGene_3466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATCTCTCCAGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	72894050	72894337	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_72894000_72894300
ES_00049774	chr6	+	1109	1	Intergenic	novelGene_3470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGTAAGCCACGTTT	4148	False	NA	NA	False	NA	NA	NA	83527363	83528472	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_83527400_83528500
ES_00049775	chr6	+	203	1	Intergenic	novelGene_3472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACTTTTAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83758259	83758462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_83758300_83758500
ES_00049777	chr6	+	215	1	Intergenic	novelGene_3476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAACTTGCCTCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	86357357	86357572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_86357400_86357600
ES_00049778	chr6	+	203	1	Intergenic	novelGene_3482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAGATTTTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	88035775	88035978	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_88035800_88036000
ES_00049779	chr6	+	1491	1	Intergenic	novelGene_3491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCCAACGGAGTCTGCAA	NA	False	NA	NA	False	NA	NA	NA	92541464	92542955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_92541500_92543000
ES_00049781	chr6	+	210	1	Intergenic	novelGene_3497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTAAAACCATACAATTT	NA	False	NA	NA	False	NA	NA	NA	103758712	103758922	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_103758700_103758900
ES_00049782	chr6	+	1655	1	Intergenic	novelGene_3498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGTAATAAGGACCGATT	NA	False	NA	NA	False	NA	NA	NA	108061332	108062987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_108061300_108063000
ES_00049784	chr6	+	208	1	Intergenic	novelGene_3510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTTGTTAATCAAATAG	7743	False	NA	NA	False	NA	NA	NA	116145180	116145388	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_116145200_116145400
ES_00049785	chr6	+	331	1	Intergenic	novelGene_3511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCACCAGCCCGATATG	NA	False	NA	NA	False	NA	NA	NA	117855043	117855374	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_117855000_117855400
ES_00049786	chr6	+	201	1	Intergenic	novelGene_3515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATGCATTTCTGTATGT	NA	False	NA	NA	False	NA	NA	NA	118218000	118218201	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_118218000_118218200
ES_00049787	chr6	+	216	1	Intergenic	novelGene_3518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCCTCTCTTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	120142628	120142844	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120142600_120142800
ES_00049788	chr6	+	251	1	Intergenic	novelGene_3525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACC	2829	False	NA	NA	False	AATAAA	-26	NA	120437824	120438075	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr6_+_120437800_120438100
ES_00049813	chr7	+	899	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	0	52006	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGAAGAGGCCTCCCTAC	NA	False	NA	NA	False	NA	NA	NA	3230841	3283642	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_3231708_3283609
ES_00049814	chr7	+	2811	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	2	0	2	0	multi-exon	FALSE	canonical	3	335	junction_1	308.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	232	False	NA	14	True	AATATA	-8	NA	3339060	3347865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3339156_3341727_3341816_3345237
ES_00049815	chr7	+	2943	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	232	False	NA	14	True	AATATA	-8	NA	3339060	3347865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3339318_3341727_3341816_3345237_3346669_3346698
ES_00049816	chr7	+	2781	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	232	False	NA	14	True	AATATA	-8	NA	3339060	3347865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3339156_3341727_3341816_3345237_3346669_3346698
ES_00049817	chr7	+	4017	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	0	10	0	-10	multi-exon	FALSE	canonical	3	270	junction_1	341	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGCTTGCGTCCA	271	False	NA	NA	False	ATTAAA	-4	NA	3339099	3348948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3339318_3341727_3341816_3345237
ES_00049818	chr7	+	2770	4	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	427.750965970726	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2701	False	NA	14	True	AATATA	-8	NA	3341529	3347865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3341614_3341727_3341816_3345237_3346669_3346698
ES_00049819	chr7	+	2882	3	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	476	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2701	False	NA	14	True	AATATA	-8	NA	3341529	3347865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3341816_3345237_3346669_3346700
ES_00049820	chr7	+	2798	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	0	0	0	0	multi-exon	FALSE	canonical	3	952	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2790	False	NA	-13	True	TTTAAA	-10	NA	3341618	3347838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3341816_3345237
ES_00049821	chr7	+	3116	18	FSM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	11	0	11	0	multi-exon	TRUE	canonical	3	18	junction_10	8.64845927034781	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGATGTTTTCTTGTA	NA	False	NA	11	True	AATAAA	-22	NA	3352048	3379615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
ES_00049823	chr7	+	2757	5	NNC	ENSMUSG00000078815.9	novel	1977	4	NA	NA	-645	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	7.79422863405995	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTGTGTTGGAGCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	3472065	3484183	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3473509_3478953_3479029_3480334_3480473_3481159_3481295_3483217
ES_00049824	chr7	+	666	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	-323	0	-305	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	2486	False	NA	22	True	AATAAA	-24	NA	3620066	3623162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
ES_00049825	chr7	+	1105	4	FSM	ENSMUSG00000035674.14	ENSMUST00000150497.8	782	4	-312	-11	-305	0	multi-exon	FALSE	canonical	3	7	junction_2	1418.73472581107	1527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	2486	False	NA	22	True	AATAAA	-24	NA	3620066	3623162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3620407_3620615_3621140_3622428_3622507_3622999
ES_00049826	chr7	+	598	4	FSM	ENSMUSG00000035674.14	ENSMUST00000076657.11	515	4	-106	23	-106	-23	multi-exon	FALSE	canonical	3	2080	junction_1	661.918591839074	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGTGACCTAGACAAGTGT	149	False	NA	NA	False	NA	NA	NA	3620265	3623303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622999
ES_00049827	chr7	+	834	3	FSM	ENSMUSG00000008373.17	ENSMUST00000143231.2	827	3	-7	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	159.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAATAAACATG	2933	False	NA	NA	False	AAAAAG	-2	NA	3632983	3634420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3633056_3633556_3633742_3633843
ES_00049828	chr7	+	3137	14	FSM	ENSMUSG00000008373.17	ENSMUST00000008517.13	3144	14	7	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	77.2880572079687	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGAGTTCAATACTTGGC	2940	False	NA	NA	False	AATAAA	-21	NA	3632990	3645485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ES_00049829	chr7	+	4386	1	FSM	ENSMUSG00000035632.17	ENSMUST00000206331.2	4333	1	-51	-2	-51	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGGATAGTCCAGGT	2677	False	NA	40	True	NA	NA	NA	3648215	3652601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3648200_3652600
ES_00049830	chr7	+	2951	18	NIC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	215.895415536845	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGGCAGCTGAGGCCTC	2677	False	NA	NA	False	AATAAA	-14	NA	3648215	3664099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656195_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ES_00049831	chr7	+	2929	18	NIC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	136	junction_1	291.16989891574	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGGCAGCTGAGGCCTC	2710	False	NA	NA	False	AATAAA	-14	NA	3648248	3664099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_3648595_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656195_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ES_00049833	chr7	+	2822	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCTCCTATCCC	2812	False	NA	NA	False	AATAAA	-23	NA	3648350	3664108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ES_00049834	chr7	+	2824	18	NIC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	136	junction_1	220.255859396784	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGGCAGCTGAGGCCTC	2812	False	NA	NA	False	AATAAA	-14	NA	3648350	3664099	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_3648595_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ES_00049835	chr7	+	1779	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTTACAACAATCCTTGA	1785	False	NA	18	True	AATAAA	-28	NA	3696373	3704023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ES_00049837	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	2173	False	NA	NA	False	NA	NA	NA	3696761	3703886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
ES_00049838	chr7	+	1162	3	FSM	ENSMUSG00000035585.17	ENSMUST00000139396.3	1162	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGGGGGACTCTGGTGG	2211	False	NA	NA	False	NA	NA	NA	3696799	3698624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3697058_3697596_3698227_3698350
ES_00049839	chr7	+	1246	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108629.8	1238	5	-8	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	534.869610278991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2211	False	NA	-2	True	AATAAA	-8	NA	3696799	3704003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703613
ES_00049840	chr7	+	709	3	FSM	ENSMUSG00000035585.17	ENSMUST00000142713.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	556.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCAGGAGGGAGCAGGT	2239	False	NA	NA	False	NA	NA	NA	3696827	3698208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3697058_3697596_3697844_3697976
ES_00049841	chr7	+	1342	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	-23	0	-8	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2910	False	NA	-2	True	AATAAA	-8	NA	3697498	3704003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
ES_00049842	chr7	+	738	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	-8	21	-8	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	1669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAGAATTGATACTTG	1256	False	NA	-18	True	NA	NA	NA	3706983	3709875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
ES_00049843	chr7	+	928	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	-14	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	1309	False	NA	-37	True	NA	NA	NA	3707036	3709856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
ES_00049844	chr7	+	1347	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTATTGGTGTGCCTCTG	1309	False	NA	1	True	AATAAA	-16	NA	3707036	3709894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
ES_00049845	chr7	+	839	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	0	-26	0	23	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCAACTGCTCCACTACA	1635	False	NA	26	True	AATAAA	-41	NA	3707362	3709919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
ES_00049846	chr7	+	2531	14	FSM	ENSMUSG00000030428.17	ENSMUST00000119661.8	2512	14	-19	0	-19	0	multi-exon	FALSE	canonical	3	26	junction_13	14.8917196323819	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTGAGAGGATAAAAACT	271	False	NA	NA	False	NA	NA	NA	4122509	4138346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4137349
ES_00049847	chr7	+	4312	14	FSM	ENSMUSG00000030428.17	ENSMUST00000129423.8	4355	14	1	42	1	-42	multi-exon	FALSE	canonical	3	27	junction_13	14.7692307692308	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTACTCACTAAATAAACC	294	False	NA	NA	False	NA	NA	NA	4122532	4139665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4136864
ES_00049848	chr7	+	5115	15	NIC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	-33	0	intron_retention	FALSE	canonical	3	127	junction_1	77.0351099386851	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	49	False	NA	16	True	ATTAAA	-16	NA	4140004	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ES_00049851	chr7	+	5133	16	NNC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_8	117.063059929254	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	82	False	NA	16	True	ATTAAA	-16	NA	4140037	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146257_4146309_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ES_00049852	chr7	+	5115	15	FSM	ENSMUSG00000035545.14	ENSMUST00000037472.13	5105	15	-10	0	0	0	multi-exon	FALSE	canonical	3	216	junction_8	58.4889663412978	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTTGGCCTGTTTTA	82	False	NA	20	True	ATTAAA	-20	NA	4140037	4151176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ES_00049853	chr7	+	3630	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	127	junction_1	83.8505548911607	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	67	False	NA	16	True	ATTAAA	-16	NA	4140022	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
ES_00049855	chr7	+	5612	14	FSM	ENSMUSG00000035545.14	ENSMUST00000127723.8	5599	14	-13	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	95.5240915738324	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	114	False	NA	16	True	ATTAAA	-16	NA	4140069	4151172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146257_4146697_4146786_4146928_4147051_4147813_4147893_4147963_4148053_4148184_4148264
ES_00049856	chr7	+	3640	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	173	junction_15	69.6971225294767	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	86	False	NA	16	True	ATTAAA	-16	NA	4140041	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
ES_00049859	chr7	+	3091	19	FSM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	-95	0	-95	0	multi-exon	TRUE	canonical	0	0	junction_2	5.06775085865832	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGGCTGGCCTTTGCCT	3062	False	NA	4	True	NA	NA	NA	4693831	4718996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4694215_4695652_4695748_4695878_4695965_4697672_4697814_4701698_4701816_4701917_4701952_4702036_4702106_4707126_4707274_4707682_4707715_4708066_4708238_4709018_4709117_4709333_4709494_4709660_4709722_4710114_4710485_4710896_4710946_4711047_4711172_4711816_4712016_4713420_4713511_4718331
ES_00049860	chr7	+	2197	9	FSM	ENSMUSG00000059851.16	ENSMUST00000098853.9	2189	9	-8	0	-8	0	multi-exon	FALSE	canonical	3	38	junction_1	214.33585648463	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	575	False	NA	16	True	ATTAAA	-17	NA	4743105	4750513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4743181_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ES_00049861	chr7	+	2834	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108582.10	2774	9	-60	0	-8	0	multi-exon	FALSE	canonical	3	73	junction_1	203.174647778703	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	575	False	NA	16	True	ATTAAA	-17	NA	4743105	4750513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4743818_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ES_00049862	chr7	+	2177	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	653	False	NA	16	True	ATTAAA	-17	NA	4743183	4750513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ES_00049865	chr7	+	737	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	-171	540	-171	0	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2522	False	NA	-19	True	NA	NA	NA	4795701	4797525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
ES_00049866	chr7	+	772	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2809	False	NA	-19	True	NA	NA	NA	4795988	4797525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
ES_00049867	chr7	+	312	3	FSM	ENSMUSG00000030432.13	ENSMUST00000126794.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	3317	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	3412	False	NA	17	True	AATAAA	-32	NA	4796591	4797561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4796626_4797048_4797182_4797416
ES_00049868	chr7	+	225	1	Intergenic	novelGene_3581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	676	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCTCTCGCAGAGGCCC	6073	False	NA	NA	False	NA	NA	NA	4819056	4819281	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_4819100_4819300
ES_00049869	chr7	+	2244	6	FSM	ENSMUSG00000086784.3	ENSMUST00000125249.3	2244	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.8	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTGTGTGGTATTTG	3032	False	NA	9	True	NA	NA	NA	4880151	4899972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4880193_4894182_4894330_4894456_4894667_4894829_4894901_4894992_4895111_4898315
ES_00049870	chr7	+	1239	1	FSM	ENSMUSG00000108840.2	ENSMUST00000207163.2	1519	1	-121	401	-121	-401	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGACATGAACTTGCTG	NA	False	NA	NA	False	NA	NA	NA	4911915	4913154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4911900_4913200
ES_00049871	chr7	+	3530	3	FSM	ENSMUSG00000074406.6	ENSMUST00000116354.4	3523	3	-8	1	-8	-1	multi-exon	FALSE	canonical	3	14	junction_2	2	714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGTTTTGTTTTCAT	2963	False	NA	7	True	AATAAA	-13	NA	4918207	4925000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4918405_4920408_4920516_4921774
ES_00049872	chr7	+	1214	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	-72	0	-72	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2868	False	NA	5	True	AATAAA	-15	NA	5018396	5021486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5018560_5020435
ES_00049873	chr7	+	4066	2	ISM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	-70	238	-70	114	intron_retention	FALSE	canonical	2	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCAAGCCCTGACCTGGG	2878	False	NA	NA	False	NA	NA	NA	5023498	5035899	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_5023655_5031989
ES_00049874	chr7	+	1096	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	2919	False	NA	4	True	AATAAA	-15	NA	5054536	5056722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5054714_5055803
ES_00049875	chr7	+	1555	5	FSM	ENSMUSG00000035228.16	ENSMUST00000045543.8	1534	5	-21	0	-21	0	multi-exon	FALSE	canonical	3	10	junction_1	4.54835134966506	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCAGGTCTTACTA	511	False	NA	NA	False	AATAAA	-1	NA	5060174	5063784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
ES_00049876	chr7	+	2190	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	-102	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	72	False	NA	28	True	ATTAAA	-18	NA	5065141	5082932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
ES_00049877	chr7	+	2183	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTCATCTGTGTCCA	72	False	NA	33	True	ATTAAA	-23	NA	5065141	5082937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ES_00049878	chr7	+	1455	11	FSM	ENSMUSG00000030435.17	ENSMUST00000207498.2	1455	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	693.581725537806	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGGGCAAGTGCACACA	1031	False	NA	NA	False	GGGGCT	-13	NA	5070226	5082493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5070254_5070542_5070647_5071030_5071183_5071731_5071796_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ES_00049879	chr7	+	2415	8	FSM	ENSMUSG00000030435.17	ENSMUST00000207926.2	2412	8	2	-5	2	0	multi-exon	FALSE	canonical	3	87	junction_1	582.724985017174	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTCATCTGTGTCCA	1835	False	NA	33	True	ATTAAA	-23	NA	5071030	5082937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5071183_5071731_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ES_00049880	chr7	+	2565	12	FSM	ENSMUSG00000035203.17	ENSMUST00000098845.10	2565	12	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	31.9772646507711	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1308	False	NA	21	True	AATAAA	-15	NA	5083233	5101177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ES_00049881	chr7	+	2564	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	31.3495356971958	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1310	False	NA	19	True	AATAAA	-13	NA	5083235	5101175	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ES_00049882	chr7	+	2494	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	43.5085248605051	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1310	False	NA	19	True	AATAAA	-13	NA	5083235	5101175	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ES_00049883	chr7	+	2691	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	45.8262979824561	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1341	False	NA	19	True	AATAAA	-13	NA	5083266	5101175	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_5083638_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ES_00049885	chr7	+	397	1	FSM	ENSMUSG00000064231.2	ENSMUST00000072050.2	447	1	-42	92	-42	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCACTTTTGGGGCCAT	3000	False	NA	NA	False	AAGAAA	-20	NA	6021978	6022375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6022000_6022400
ES_00049886	chr7	+	3613	10	FSM	ENSMUSG00000034690.14	ENSMUST00000037728.13	3615	10	-5	7	-5	-7	multi-exon	FALSE	canonical	2	7	junction_4	4.84067131350933	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAAGTCTGATGACTTC	2972	False	NA	14	True	AATAAA	-10	NA	6048154	6108142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6048221_6063527_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542_6087711_6095465_6095637_6101828_6102000_6103751_6103923_6107516
ES_00049888	chr7	+	901	1	FSM	ENSMUSG00000109108.2	ENSMUST00000209043.2	1103	1	-302	504	-302	-504	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTCAACGGGTGATAAAGA	3407	False	NA	NA	False	ATTAAA	-18	NA	6159212	6160113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6159200_6160100
ES_00049889	chr7	+	1666	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	-18	0	-6	0	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGACTCTCCGGTGTTG	2949	False	NA	15	True	AATAAA	-24	NA	6175493	6193420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
ES_00049890	chr7	+	2474	4	FSM	ENSMUSG00000044876.16	ENSMUST00000054680.12	2467	4	-7	0	-6	0	multi-exon	FALSE	canonical	3	89	junction_1	90.9004339312464	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCGGTTCTCGTTCTTA	2949	False	NA	NA	False	NA	NA	NA	6175493	6194348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6175574_6186860_6187202_6191132_6191242_6192404
ES_00049891	chr7	+	329	2	FSM	ENSMUSG00000044876.16	ENSMUST00000137450.2	329	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGACTCTCCCACTGCT	4261	False	NA	NA	False	NA	NA	NA	6176805	6186822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6177101_6186788
ES_00049892	chr7	+	1979	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	1	0	-1	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTCATTGATTGACTTAT	3080	False	NA	NA	False	ATTAAA	-21	NA	6225276	6242421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
ES_00049893	chr7	+	982	9	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-253	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	26.4952825989835	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGATTCAGTGCGTATTC	2959	False	NA	9	True	AATAAA	-24	NA	6263281	6284861	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269856_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ES_00049894	chr7	+	716	8	ISM	ENSMUSG00000053367.16	ENSMUST00000155248.2	684	11	8182	-2	8182	2	3prime_fragment	FALSE	canonical	0	0	junction_1	32.7762980564571	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	NA	False	NA	8	True	AATAAA	-23	NA	6271716	6284860	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ES_00049895	chr7	+	3465	5	FSM	ENSMUSG00000054893.16	ENSMUST00000086327.12	3672	5	0	207	0	-6	multi-exon	FALSE	canonical	3	26	junction_1	11.1214882097676	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAGAGGTTCTTTTACA	2972	False	NA	NA	False	AATAAA	-31	NA	6289577	6310675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ES_00049896	chr7	+	3508	5	FSM	ENSMUSG00000054893.16	ENSMUST00000108562.2	3498	5	-15	5	-15	-5	multi-exon	FALSE	canonical	3	18	junction_1	14.0245320777557	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAGGTTCTTTTACAT	4246	False	NA	NA	False	AATAAA	-32	NA	6290851	6310676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ES_00049897	chr7	+	209	2	Intergenic	novelGene_3585	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTTCAAAAAAGAAAAAAA	7741	False	NA	NA	False	NA	NA	NA	6294346	6314137	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_6294377_6313958
ES_00049898	chr7	+	210	1	Intergenic	novelGene_3586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTTCAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6313927	6314137	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_6313900_6314100
ES_00049900	chr7	+	4162	5	FSM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	-117	-162	-117	162	multi-exon	FALSE	canonical	2	8	junction_1	5.71729831301464	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAGAAAAAAAAATAACACT	2837	False	NA	NA	False	NA	NA	NA	6366161	6384870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517_6378614_6381207
ES_00049901	chr7	+	4171	7	FSM	ENSMUSG00000062861.9	ENSMUST00000081022.9	4447	7	45	231	45	-231	multi-exon	FALSE	canonical	3	6	junction_3	4.21966296705739	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAGTCTCATGAAAGAT	3004	False	NA	NA	False	ATTAAA	-25	NA	6386338	6399683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6396365
ES_00049902	chr7	+	2801	5	FSM	ENSMUSG00000109176.2	ENSMUST00000208781.2	2801	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.3111795119741	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATAGTGGAGCTG	3154	False	NA	30	True	AATAAA	-41	NA	6980244	6994086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6980472_6984231_6984357_6987998_6988143_6989101_6989202_6991881
ES_00049903	chr7	+	1333	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	66	2	-17	1	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTCTTGCTTGAGTGAG	2777	False	NA	18	True	ATTAAA	-19	NA	6998364	7006088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ES_00049904	chr7	+	1169	7	FSM	ENSMUSG00000070837.7	ENSMUST00000086248.8	1154	7	-17	2	-17	1	multi-exon	FALSE	canonical	2	17	junction_1	169.856802434678	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTCTTGCTTGAGTGAG	2777	False	NA	18	True	ATTAAA	-19	NA	6998364	7006088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6998548_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ES_00049905	chr7	+	1320	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ES_00049906	chr7	+	2943	4	FSM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	-50	-168	-50	168	multi-exon	FALSE	canonical	3	16	junction_3	9.89949493661167	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTGCTTCCCACCTCCTC	2919	False	NA	NA	False	NA	NA	NA	7174278	7186729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_7174558_7175135_7175175_7177553_7177681_7184231
ES_00049907	chr7	+	236	1	FSM	ENSMUSG00000110003.2	ENSMUST00000209453.2	276	1	5	35	5	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGGAAGAGAAAGCATCC	NA	False	NA	NA	False	NA	NA	NA	9652799	9653035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_9652800_9653000
ES_00049908	chr7	+	2268	4	FSM	ENSMUSG00000054272.7	ENSMUST00000131379.4	2276	4	8	0	8	0	multi-exon	FALSE	canonical	3	7	junction_1	11.2644968324772	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGTAGTTTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	10739679	10744474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_10739779_10740385_10740858_10742693_10742854_10742937
ES_00049909	chr7	+	2180	4	FSM	ENSMUSG00000070828.11	ENSMUST00000145237.8	1829	4	0	-351	0	351	multi-exon	FALSE	canonical	3	19	junction_1	4.49691252107735	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAATATTTCTCTACAT	NA	False	NA	NA	False	NA	NA	NA	11131841	11136596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_11131924_11132578_11133051_11134886_11135047_11135130
ES_00049910	chr7	+	697	3	NNC	ENSMUSG00000109969.2	novel	2277	4	NA	NA	-18	-1634	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	6.5	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGCCACAGGTTAGTTGG	NA	False	NA	NA	False	NA	NA	NA	11343216	11346405	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_11343294_11343947_11344419_11346256
ES_00049911	chr7	+	4738	7	FSM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	10	0	-2	0	multi-exon	FALSE	canonical	3	94	junction_4	11.513277359447	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATGACCTTTTTATTG	NA	False	NA	NA	False	AATAAA	-17	NA	12212229	12230162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12223496_12223624_12223875_12223972_12226283
ES_00049913	chr7	+	985	1	FSM	ENSMUSG00000082872.2	ENSMUST00000118665.2	1448	1	0	463	0	-463	mono-exon	FALSE	NA	NA	NA	NA	NA	607	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTAGGTGAACTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	12337122	12338107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12337100_12338100
ES_00049914	chr7	+	3728	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	-38	-99	-38	99	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTTGAATAATATCTGCT	NA	False	NA	126	True	NA	NA	NA	12568649	12584603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ES_00049915	chr7	+	3065	4	FSM	ENSMUSG00000060397.7	ENSMUST00000144578.2	3834	4	18	751	18	-751	multi-exon	FALSE	canonical	2	3	junction_3	3.55902608401044	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGAAGCCCTGATACAAA	NA	False	NA	NA	False	NA	NA	NA	12615121	12626598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12615288_12618569_12618697_12618949_12619046_12623922
ES_00049916	chr7	+	3016	2	FSM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	-21	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGGCTTCTCCAACATC	NA	False	NA	30	True	AATAAA	-41	NA	12631741	12643010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12631908_12640160
ES_00049917	chr7	+	3517	3	NIC	ENSMUSG00000054715.12	novel	2620	3	NA	NA	0	68	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	7.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATTGCAGGCAGGCCAA	NA	False	NA	98	True	NA	NA	NA	12631793	12643078	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_12631908_12637527_12638013_12640160
ES_00049918	chr7	+	378	2	Intergenic	novelGene_3599	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	12650955	12653377	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_12651214_12653257
ES_00049919	chr7	+	852	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	0	-91	0	91	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAACAAAAAGAAAATTGT	NA	False	NA	129	True	NA	NA	NA	12656216	12660704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ES_00049920	chr7	+	813	6	FSM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	-19	0	-19	0	multi-exon	FALSE	canonical	3	946	junction_1	6466.78878578851	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656197	12660612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ES_00049921	chr7	+	778	5	FSM	ENSMUSG00000012848.16	ENSMUST00000147435.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7593.8368883918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTCAGGGCATACCACT	NA	False	NA	NA	False	NA	NA	NA	12656244	12660421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12656476_12656899_12657009_12659318_12659529_12659663_12659793_12660322
ES_00049922	chr7	+	1262	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	-13	-1	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656244	12660612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
ES_00049923	chr7	+	764	7	NNC	ENSMUSG00000012848.16	novel	794	6	NA	NA	0	31499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6564.80498356366	2174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGTGGGGAGCTGAGTA	NA	False	NA	NA	False	AATAAA	-39	NA	12656244	12692112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498_12660613_12692080
ES_00049926	chr7	+	3332	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	13	43	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTTTTCAACACTGTC	NA	False	NA	NA	False	NA	NA	NA	12711832	12718310	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
ES_00049927	chr7	+	3245	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	0	0	0	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	58	True	AATAAA	-19	NA	12758078	12764962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ES_00049931	chr7	+	589	2	FSM	ENSMUSG00000005566.15	ENSMUST00000123778.2	565	2	-24	0	-24	0	multi-exon	FALSE	canonical	3	4601	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCATGCCTCAGCTGT	NA	False	NA	55	True	AATAAA	-16	NA	12764274	12764959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12764520_12764615
ES_00049933	chr7	+	3114	28	FSM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	0	60	0	0	multi-exon	TRUE	canonical	3	470	junction_1	193.081793225492	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAGATCCTGGGGCTGG	1107	False	NA	-30	True	NA	NA	NA	13011238	13045290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ES_00049934	chr7	+	3091	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	2620	False	NA	30	True	AATAAA	-18	NA	13012751	13045350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ES_00049935	chr7	+	3159	28	FSM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	7	0	7	0	multi-exon	FALSE	canonical	3	577	junction_1	177.886980349259	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	3066	False	NA	30	True	AATAAA	-18	NA	13013197	13045350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_13013400_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ES_00049938	chr7	+	2668	1	FSM	ENSMUSG00000098506.3	ENSMUST00000185066.3	2886	1	-11	229	-11	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGAGCTCTCAGCACCAG	NA	False	NA	NA	False	NA	NA	NA	14038693	14041361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_14038700_14041400
ES_00049939	chr7	+	955	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	-21	0	-21	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15630027	15637945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
ES_00049940	chr7	+	2090	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	3	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	15630095	15634223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15630183_15631328_15631478_15632369
ES_00049941	chr7	+	571	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_1	106.5	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635570	15637945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15635663_15636774_15636933_15637624
ES_00049943	chr7	+	915	4	FSM	ENSMUSG00000006024.14	ENSMUST00000124563.8	891	4	-24	0	0	0	multi-exon	FALSE	canonical	3	1229	junction_2	49.3153120237518	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCACATCTCCATCGCTG	NA	False	NA	NA	False	NA	NA	NA	15832532	15847059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508
ES_00049951	chr7	+	6073	14	FSM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	-34	0	-34	0	multi-exon	FALSE	canonical	0	0	junction_9	35.8403758961691	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGAGTCTAGTCTCAT	4744	False	NA	17	True	ATTAAA	-21	NA	16135097	16171620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16135232_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
ES_00049953	chr7	+	834	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	-19	0	-19	0	multi-exon	FALSE	canonical	3	728	junction_1	16.5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAGACTCTGAGTGATA	NA	False	NA	16	True	ATTAAA	-17	NA	16186684	16189415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16187096_16188045_16188139_16189085
ES_00049954	chr7	+	844	3	FSM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	-94	-51	90	51	multi-exon	FALSE	canonical	3	42	junction_1	359.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCAACCTTTGGGGACGA	NA	False	NA	71	True	NA	NA	NA	16186793	16189470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16187096_16187981_16188139_16189085
ES_00049957	chr7	+	2774	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	-10	0	-10	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515254	16532199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ES_00049958	chr7	+	2829	8	FSM	ENSMUSG00000001918.18	ENSMUST00000127401.8	2807	8	-22	0	6	0	multi-exon	FALSE	canonical	3	1461	junction_5	120.463052172753	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515270	16532199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16530084_16531426
ES_00049960	chr7	+	3399	18	FSM	ENSMUSG00000030374.16	ENSMUST00000019220.16	3535	18	132	4	132	0	multi-exon	FALSE	canonical	3	94	junction_8	104.795467294144	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAGGTTTTCCAGGCCA	NA	False	NA	12	True	AATAAA	-12	NA	16549945	16574852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565389_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
ES_00049961	chr7	+	3082	18	FSM	ENSMUSG00000030374.16	ENSMUST00000108495.9	3082	18	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_8	55.9168933502007	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAGGTTTTCCAGGCCA	NA	False	NA	12	True	AATAAA	-12	NA	16550241	16574852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565410_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
ES_00049966	chr7	+	763	6	FSM	ENSMUSG00000041187.17	ENSMUST00000205456.2	779	6	16	0	16	0	multi-exon	FALSE	canonical	2	2	junction_4	2.48193472919817	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATTACCCTCTTCCAGA	NA	False	NA	NA	False	NA	NA	NA	16582649	16587907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16582805_16582905_16583132_16583949_16584028_16584118_16584273_16587179_16587298_16587875
ES_00049971	chr7	+	423	1	FSM	ENSMUSG00000070802.6	ENSMUST00000094807.6	4147	1	-28	3752	-28	-3752	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCCGGGCAGCGCCATGA	NA	False	NA	NA	False	NA	NA	NA	16678578	16679001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16678600_16679000
ES_00049979	chr7	+	2529	5	FSM	ENSMUSG00000030410.17	ENSMUST00000032570.14	2494	5	-36	1	-36	0	multi-exon	FALSE	canonical	3	219	junction_3	47.1858029496161	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810115	18816700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18815843_18815919_18816200
ES_00049980	chr7	+	2388	4	FSM	ENSMUSG00000030410.17	ENSMUST00000108479.2	2388	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	77.0757203447796	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTTTCTGTTCCCTGGG	NA	False	NA	14	True	ACTAAA	-14	NA	18810182	18816701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18816200
ES_00049981	chr7	+	3882	4	FSM	ENSMUSG00000030410.17	ENSMUST00000146429.2	2080	4	-1802	0	-36	0	multi-exon	FALSE	canonical	3	219	junction_2	52.8288641642889	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810115	18816700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18812163_18813966_18815227_18815843_18815919_18816200
ES_00049982	chr7	+	614	2	FSM	ENSMUSG00000030409.17	ENSMUST00000140742.2	592	2	-22	0	-22	0	multi-exon	FALSE	canonical	3	21	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCGCTCCGCTCCACA	NA	False	NA	NA	False	NA	NA	NA	18826198	18827129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18826558_18826874
ES_00049987	chr7	+	2533	21	ISM	ENSMUSG00000040811.16	ENSMUST00000117338.8	2765	22	2922	-225	-1827	0	3prime_fragment	FALSE	canonical	3	14	junction_1	46.9870992933167	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18913267	18940407	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_18913371_18913450_18913575_18913675_18913781_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ES_00049988	chr7	+	2270	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	-15	0	-15	0	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915079	18940407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ES_00049991	chr7	+	2341	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	28.4707452191426	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915140	18940407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ES_00049992	chr7	+	2265	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	33.4490583749803	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915146	18940407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_18915211_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ES_00049994	chr7	+	2394	19	Fusion	ENSMUSG00000040811.16_ENSMUSG00000065543.3	novel	593	5	NA	NA	24	0	multi-exon	FALSE	canonical	3	11	junction_1	34.4726139291918	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915280	18940407	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_+_18915474_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ES_00049997	chr7	+	1311	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	62	2	62	0	multi-exon	TRUE	canonical	3	315	junction_9	39.5851948880006	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCAGTGGCTCTGCGTGT	773	False	NA	13	True	AATAAA	-18	NA	19078764	19090447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ES_00049999	chr7	+	413	5	FSM	ENSMUSG00000003549.10	ENSMUST00000177486.2	413	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	136.074428163414	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCAGTGGCTCTGCGTGT	255	False	NA	13	True	AATAAA	-18	NA	19086557	19090447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19086631_19088255_19088351_19089025_19089098_19089217_19089287_19090343
ES_00050000	chr7	+	3369	14	NIC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	12.7483610734546	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	697	False	NA	NA	False	AATAAA	-15	NA	19093673	19112458	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_19093724_19094951_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ES_00050002	chr7	+	3588	23	FSM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	-10	0	-10	0	multi-exon	TRUE	canonical	3	88	junction_1	20.1272809394744	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTTGCTTCTGATAT	NA	False	NA	13	True	AATAAA	-21	NA	19115924	19129619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
ES_00050003	chr7	+	607	6	FSM	ENSMUSG00000030400.18	ENSMUST00000127363.2	607	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_4	9.8508882848198	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTAGGGCAGCGCCAG	NA	False	NA	NA	False	NA	NA	NA	19116132	19119818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754
ES_00050007	chr7	+	1049	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	-273	9	44	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACAGACCTGTGCAGTG	234	False	NA	12	True	AGTAAA	-13	NA	19242363	19250061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ES_00050010	chr7	+	719	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	505	False	NA	21	True	AGTAAA	-22	NA	19242634	19250070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ES_00050019	chr7	+	3817	4	NIC	ENSMUSG00000057101.9	novel	3901	5	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	41.2660743091573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGATGTCCCACTTGTT	NA	False	NA	NA	False	AATAAA	-23	NA	23781344	23807131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_23781664_23797245_23797321_23800872_23800994_23803829
ES_00050021	chr7	+	4009	6	FSM	ENSMUSG00000057101.9	ENSMUST00000206184.2	827	6	-27	-3155	-4	0	multi-exon	FALSE	canonical	3	9	junction_3	37.880865882395	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCACTTGTTTGATCTT	NA	False	NA	NA	False	AATAAA	-30	NA	23781344	23807138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_23781664_23784850_23784932_23785912_23786017_23797245_23797321_23800872_23800994_23803829
ES_00050023	chr7	+	3408	4	FSM	ENSMUSG00000047603.10	ENSMUST00000056549.9	3373	4	-35	0	0	0	multi-exon	TRUE	canonical	3	32	junction_3	6.18241233033047	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTTTCTCATCCTTT	NA	False	NA	6	True	AATAAA	-14	NA	23833631	23842666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_23833913_23834682_23834741_23836470_23836598_23839724
ES_00050027	chr7	+	649	3	FSM	ENSMUSG00000002210.12	ENSMUST00000139481.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	4.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACCACCCAAGGGAGAGA	NA	False	NA	NA	False	GGGGCT	-42	NA	24099148	24105276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24099317_24102816_24102973_24104951
ES_00050028	chr7	+	2128	14	NNC	ENSMUSG00000002210.12	novel	2242	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_3	34.9034170348701	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099148	24122203	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_24099317_24102816_24102973_24104951_24105027_24105121_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ES_00050033	chr7	+	2176	9	FSM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	-15	0	-15	0	multi-exon	FALSE	canonical	3	44	junction_8	7.9912061042123	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGGTGGCTGTGTGTCT	6386	False	NA	NA	False	ATTAAA	-17	NA	24181432	24203964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24181588_24198580_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
ES_00050035	chr7	+	1182	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	41.5	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206494	24215107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24206862_24209970_24210179_24214500
ES_00050036	chr7	+	1159	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	107	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206554	24215105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24206862_24209970_24210179_24214461
ES_00050042	chr7	+	668	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	-6	0	-6	0	multi-exon	FALSE	canonical	2	6	junction_1	14	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGTTGGCTCCTTCGAC	1123	False	NA	NA	False	AATAAA	-21	NA	24476646	24484077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24476765_24480294_24480655_24483887
ES_00050044	chr7	+	506	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	-21	0	-21	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	NA	False	NA	NA	False	AATAAA	-34	NA	24561616	24562122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24561600_24562100
ES_00050047	chr7	+	622	5	FSM	ENSMUSG00000040952.17	ENSMUST00000153451.9	604	5	-18	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	11081.527678416	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTGGACAGGTGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	24584057	24588375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24584280_24584560_24584632_24584876_24584978_24587706_24587891_24588331
ES_00050048	chr7	+	523	6	NNC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	10588.4769707451	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCCTGGTCTGGATCTG	NA	False	NA	22	True	AATAAA	-12	NA	24584057	24589227	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587890_24588315_24588387_24589165
ES_00050049	chr7	+	1287	5	FSM	ENSMUSG00000040952.17	ENSMUST00000108428.8	1284	5	-3	0	0	0	multi-exon	FALSE	canonical	3	12982	junction_1	6509.68167424491	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCCTGGTCTGGATCTG	NA	False	NA	22	True	AATAAA	-12	NA	24584057	24589227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331
ES_00050050	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
ES_00050051	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584138	24589231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ES_00050052	chr7	+	652	4	FSM	ENSMUSG00000040952.17	ENSMUST00000124035.2	641	4	-11	0	-11	0	multi-exon	FALSE	canonical	3	15652	junction_3	5490.91639791473	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTATGCGTCTGTTGAAA	NA	False	NA	NA	False	NA	NA	NA	24584330	24588397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24584632_24584876_24584978_24587706_24587891_24588331
ES_00050057	chr7	+	3217	29	FSM	ENSMUSG00000040940.19	ENSMUST00000206508.2	3195	29	-22	0	-3	0	multi-exon	FALSE	canonical	3	24	junction_11	75.6323006258515	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGTGTGAGGGCGTT	8551	False	NA	36	True	AATATA	-18	NA	24602458	24626019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24602554_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616228_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ES_00050058	chr7	+	3262	29	NIC	ENSMUSG00000040940.19	novel	3214	29	NA	NA	-11	-8	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	60.0176844686597	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAGGAAAGATCTGTGT	9862	False	NA	23	True	AATATA	-5	NA	24603769	24626006	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616228_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ES_00050060	chr7	+	3317	29	FSM	ENSMUSG00000040940.19	ENSMUST00000117419.8	3214	29	-106	3	-55	0	multi-exon	FALSE	canonical	3	251	junction_1	33.6220742600902	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATCTGTGTGTGTGAGG	9818	False	NA	31	True	AATATA	-13	NA	24603725	24626014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ES_00050067	chr7	+	6093	20	FSM	ENSMUSG00000005442.14	ENSMUST00000163320.8	6096	20	0	3	0	0	multi-exon	FALSE	canonical	3	37	junction_13	27.4875947844843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGTGGGCTGCTGGCT	3251	False	NA	9	True	ATTAAA	-11	NA	24981603	24993567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ES_00050068	chr7	+	6096	20	FSM	ENSMUSG00000005442.14	ENSMUST00000005578.13	6099	20	0	3	0	0	multi-exon	FALSE	canonical	3	38	junction_9	26.9909187559605	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGGGCTGCTGGCTTGT	3251	False	NA	12	True	ATTAAA	-14	NA	24981603	24993570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ES_00050069	chr7	+	6049	20	NIC	ENSMUSG00000005442.14	novel	6096	20	NA	NA	49	-1	intron_retention	FALSE	canonical	3	38	junction_9	26.7689405334862	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGTGGGCTGCTGGCTTG	3300	False	NA	11	True	ATTAAA	-13	NA	24981652	24993569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ES_00050072	chr7	+	10242	41	FSM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	-205	3	-205	0	multi-exon	TRUE	canonical	1	8	junction_9	8.91613705592282	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGCATCGTAACTTCAT	NA	False	NA	8	True	AATAAA	-13	NA	25016383	25065339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_25017119_25025804_25025969_25026894_25027102_25027909_25028091_25028176_25028266_25029285_25029702_25030110_25030257_25030438_25030562_25033182_25033338_25033553_25033674_25033990_25034136_25034216_25034381_25037198_25037400_25037783_25037985_25038889_25039127_25039643_25039763_25039841_25039974_25040057_25040172_25040396_25040646_25041122_25041323_25041637_25041849_25041944_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ES_00050075	chr7	+	1418	5	ISM	ENSMUSG00000057229.12	ENSMUST00000085953.5	2387	6	1403	-3	0	0	3prime_fragment	FALSE	canonical	3	96	junction_4	15.0332963783729	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	3221	False	NA	39	True	NA	NA	NA	25320320	25324976	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ES_00050076	chr7	+	1861	1	FSM	ENSMUSG00000059479.8	ENSMUST00000206824.2	1844	1	-17	0	-12	0	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAAGGCCAGGAGCGAT	9950	False	NA	5	True	NA	NA	NA	25327049	25328910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_25327000_25328900
ES_00050085	chr7	+	7356	7	FSM	ENSMUSG00000078786.10_ENSMUSG00000080533.3	ENSMUST00000179391.8	1748	7	270	-5878	270	12	multi-exon	FALSE	canonical	2	9	junction_1	4.48763733927875	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTTCTTTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	26895475	26909623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_26895533_26896330_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
ES_00050087	chr7	+	2292	14	FSM	ENSMUSG00000003762.14	ENSMUST00000108378.10	2276	14	-16	0	-16	0	multi-exon	TRUE	canonical	3	76	junction_6	13.8260537867321	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCAGTTCTTTTCTCTCT	NA	False	NA	16	True	AATAAA	-16	NA	26932621	26957369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ES_00050088	chr7	+	2761	10	FSM	ENSMUSG00000063160.13	ENSMUST00000079258.7	2760	10	-1	0	-1	0	multi-exon	FALSE	canonical	3	70	junction_4	11.8415464455544	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26958148	26981566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_26958387_26961592_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
ES_00050094	chr7	+	296	1	Intergenic	novelGene_3651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGGGCTCATAAGGACT	NA	False	NA	NA	False	NA	NA	NA	27208902	27209198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27208900_27209200
ES_00050098	chr7	+	2048	4	FSM	ENSMUSG00000049643.16	ENSMUST00000186501.2	340	4	-27	-1681	-27	2	multi-exon	FALSE	canonical	3	27	junction_1	145.525102836437	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGTGTATGTAT	7107	False	NA	NA	False	AATAAA	-22	NA	27273864	27281526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27273927_27274015_27274166_27278137_27278209_27279761
ES_00050104	chr7	+	4634	5	FSM	ENSMUSG00000037640.16	ENSMUST00000042641.14	2727	5	-119	-1788	3	-1453	multi-exon	FALSE	canonical	3	15	junction_1	62.997519792449	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAATAAATATATTTA	NA	False	NA	NA	False	NA	NA	NA	27430816	27451674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27431090_27436360_27436414_27437727_27437855_27440381_27440481_27447592
ES_00050108	chr7	+	3505	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	6	0	6	0	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGTAAGAAAAATAT	3333	False	NA	NA	False	NA	NA	NA	27560015	27580250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
ES_00050120	chr7	+	477	6	FSM	ENSMUSG00000060791.16	ENSMUST00000108289.8	477	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	171.128723480309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCAAGAGCGAAATAAAGG	1855	False	NA	NA	False	NA	NA	NA	28136911	28145928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28137000_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ES_00050121	chr7	+	605	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	32	0	32	0	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAACGACATGGTATCT	178	False	NA	NA	False	AATAAA	-19	NA	28140383	28145964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ES_00050124	chr7	+	1811	5	FSM	ENSMUSG00000030600.16	ENSMUST00000189877.7	1852	5	41	0	41	0	multi-exon	TRUE	canonical	1	4	junction_4	31.2519999360041	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCTAACCCCTTTCCATC	4187	False	NA	NA	False	AATAAA	-18	NA	28151613	28161557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28151762_28153921_28153955_28157383_28157439_28158051_28159489_28161419
ES_00050127	chr7	+	1988	6	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-42	0	combination_of_known_junctions	TRUE	canonical	3	31	junction_1	12.2637677734047	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	8803	False	NA	NA	False	AATAAA	-16	NA	28392231	28398760	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
ES_00050128	chr7	+	1946	6	FSM	ENSMUSG00000037463.15	ENSMUST00000039998.11	1946	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	20.7460839678239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8845	False	NA	NA	False	AATAAA	-19	NA	28392273	28398763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28392398_28392694_28393076_28394158_28394268_28394430_28394527_28396064_28396201_28397663
ES_00050129	chr7	+	1948	5	FSM	ENSMUSG00000037463.15	ENSMUST00000108281.8	1948	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	9.31396800509858	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9140	False	NA	NA	False	AATAAA	-16	NA	28392568	28398760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
ES_00050132	chr7	+	1806	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416256	28437563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
ES_00050133	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416297	28437569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
ES_00050136	chr7	+	1864	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	-21	0	11	0	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466170	28488085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ES_00050142	chr7	+	2142	13	FSM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_8	508.744178235868	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGTGGGTTGTCTGCTTT	NA	False	NA	33	True	AATAAA	-36	NA	28510314	28521691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ES_00050143	chr7	+	2429	6	FSM	ENSMUSG00000015165.17	ENSMUST00000174755.8	2426	6	-3	0	0	0	multi-exon	FALSE	canonical	3	5544	junction_4	444.492249651217	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAATAAAAAATTAAACCA	NA	False	NA	NA	False	NA	NA	NA	28510361	28516361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704
ES_00050144	chr7	+	2180	12	FSM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_7	501.59715158615	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACTATTTGCTGG	NA	False	NA	7	True	AATAAA	-10	NA	28510361	28521665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ES_00050145	chr7	+	1850	13	FSM	ENSMUSG00000015165.17	ENSMUST00000174882.8	1850	13	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_6	2150.9690451825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28512769	28521674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28516759_28516830_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ES_00050150	chr7	+	2708	32	FSM	ENSMUSG00000037337.12	ENSMUST00000208227.2	2720	32	12	0	12	0	multi-exon	FALSE	canonical	2	5	junction_1	36.7447250350036	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTCGGAGGAGAGATT	NA	False	NA	20	True	AATAAA	-25	NA	28681486	28702701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28681690_28682413_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28702521
ES_00050158	chr7	+	1135	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	-24	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6037	False	NA	12	True	AATAAA	-15	NA	28937753	28946954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ES_00050159	chr7	+	1167	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	482.335940174142	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6171	False	NA	12	True	AATAAA	-15	NA	28937887	28946954	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ES_00050160	chr7	+	1153	8	FSM	ENSMUSG00000030588.13	ENSMUST00000142519.3	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	530.605237787328	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGCCTTCTTCTCCTT	6235	False	NA	28	True	NA	NA	NA	28937951	28947022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ES_00050162	chr7	+	2323	12	FSM	ENSMUSG00000030584.15	ENSMUST00000049977.13	2309	12	-14	0	11	0	multi-exon	FALSE	canonical	3	46	junction_7	12.1008161735527	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCCATCTCTAACCTC	1775	False	NA	10	True	ATTAAA	-26	NA	29003386	29017013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ES_00050163	chr7	+	1564	12	FSM	ENSMUSG00000030584.15	ENSMUST00000065181.12	1574	12	10	0	4	0	multi-exon	FALSE	canonical	3	23	junction_1	16.304438375602	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAATATATACAAAGAG	5835	False	NA	NA	False	AAAAAG	-27	NA	29007446	29016328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ES_00050167	chr7	+	5723	5	FSM	ENSMUSG00000046185.11	ENSMUST00000032802.5	4113	5	-12	-1598	-12	1598	multi-exon	FALSE	canonical	3	71	junction_4	7.79021822544144	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCCTCTCATGGTTTA	NA	False	NA	4	True	AATATA	-16	NA	29467964	29480844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29468121_29470763_29470829_29474762_29474890_29475329_29475417_29475556
ES_00050169	chr7	+	4582	5	FSM	ENSMUSG00000011427.17	ENSMUST00000032796.14	3376	5	-43	-1163	-38	1098	multi-exon	TRUE	canonical	3	32	junction_1	5.78791845139511	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGGGAGGCAGAGGCAG	NA	False	NA	73	True	NA	NA	NA	29515500	29531528	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29515715_29522404_29522570_29524254_29524379_29525116_29525213_29527545
ES_00050171	chr7	+	2614	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGTTTCATAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	29607941	29616232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
ES_00050174	chr7	+	7171	10	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	169	junction_6	29.7138617525039	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCAAGACTCACTTTCTC	NA	False	NA	19	True	AATAAA	-22	NA	29683391	29727707	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
ES_00050175	chr7	+	7224	10	NIC	ENSMUSG00000074221.13	novel	6867	9	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_6	59.6777353689417	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCAAGACTCACTTTCTC	NA	False	NA	19	True	AATAAA	-22	NA	29683335	29727707	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713267_29713315_29714490_29714615_29716591_29716688_29721642
ES_00050181	chr7	+	496	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	-64	53	-14	-5	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACCCGGCTCCAGCCTG	5660	False	NA	19	True	AATAAA	-20	NA	29883554	29885450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
ES_00050186	chr7	+	453	5	FSM	ENSMUSG00000019738.16	ENSMUST00000138118.8	435	5	-18	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.6717259162333	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCACCGCTGGACTGAGT	NA	False	NA	-47	True	NA	NA	NA	29931756	29932750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29931830_29931906_29931962_29932174_29932407_29932491_29932544_29932709
ES_00050189	chr7	+	994	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	-12	0	-12	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008129	30013729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
ES_00050190	chr7	+	1123	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	-11	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008201	30013728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
ES_00050194	chr7	+	1364	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	-9	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014231	30018471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ES_00050195	chr7	+	566	2	FSM	ENSMUSG00000019737.15	ENSMUST00000176965.2	664	2	0	98	0	-98	multi-exon	FALSE	canonical	3	217	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCGGTGCCAGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	30014295	30015036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30014512_30014686
ES_00050197	chr7	+	1006	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014340	30018471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
ES_00050198	chr7	+	1927	3	FSM	ENSMUSG00000019737.15	ENSMUST00000176536.2	1079	3	-848	0	372	0	multi-exon	FALSE	canonical	3	214	junction_2	17.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30015816	30018465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30017468_30018097_30018157_30018248
ES_00050201	chr7	+	1987	2	FSM	ENSMUSG00000006649.18	ENSMUST00000131004.3	1987	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATACTTTTCAAAAGTAAAA	125	False	NA	NA	False	AATGAA	-19	NA	30184339	30186415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30186175_30186263
ES_00050208	chr7	+	890	7	FSM	ENSMUSG00000078765.12	ENSMUST00000165773.8	874	7	-16	0	0	0	multi-exon	FALSE	canonical	3	472	junction_4	66.6524984944717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCACTCTCCAGTCCCA	NA	False	NA	-85	True	NA	NA	NA	30262750	30264669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ES_00050209	chr7	+	824	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262750	30264785	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ES_00050210	chr7	+	3025	10	FSM	ENSMUSG00000109378.2	ENSMUST00000167042.8	3007	10	-18	0	-18	0	multi-exon	FALSE	canonical	3	13	junction_8	228.074549215821	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTGCCTGTCCTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	30262750	30267383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266926_30267005
ES_00050214	chr7	+	412	6	FSM	ENSMUSG00000074199.8	ENSMUST00000190990.7	403	6	-9	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	24.1694021440333	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCTGAATCTGTG	NA	False	NA	9	True	AATAAA	-14	NA	30487320	30490508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490397
ES_00050216	chr7	+	411	5	NIC	ENSMUSG00000074199.8	novel	470	6	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	30.6787793107874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCTGAATCTGTGTT	NA	False	NA	11	True	AATAAA	-16	NA	30487337	30490510	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_30487448_30489137_30489180_30489336_30489382_30489992_30490041_30490344
ES_00050232	chr7	+	2550	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	-3	8234	-3	-2121	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGATATTGTCTGTACTCA	NA	False	NA	11	True	AATAAA	-17	NA	35096456	35129878	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
ES_00050234	chr7	+	2828	20	FSM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	-3	0	-3	0	multi-exon	FALSE	canonical	2	7	junction_17	42.1773724634719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTTGCATGTTTATTTC	NA	False	NA	8	True	AATAAA	-18	NA	35096456	35138112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339_35129537_35131942_35132033_35134898_35135069_35137752
ES_00050240	chr7	+	4285	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	-1	0	-1	0	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGTGCCATTTTTGTG	NA	False	NA	23	True	AGTAAA	-15	NA	35285667	35338651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
ES_00050241	chr7	+	4262	29	NNC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_20	54.5813379185559	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGTGCCATTTTTGT	NA	False	NA	22	True	AGTAAA	-14	NA	35285685	35338650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321733_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
ES_00050249	chr7	+	2915	2	NNC	ENSMUSG00000074903.6	novel	560	2	NA	NA	-375	1988	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	1182	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAACCACTTGGACCG	NA	False	NA	17	True	NA	NA	NA	39237979	39241129	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_39238787_39239021
ES_00050252	chr7	+	1364	1	FSM	ENSMUSG00000083500.2	ENSMUST00000119135.2	1371	1	7	0	7	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGCCATTCTTGTAG	NA	False	NA	NA	False	CATAAA	-3	NA	41139781	41141145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_41139800_41141100
ES_00050255	chr7	+	4113	7	NIC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	76.9518247563587	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	45	True	AATAAA	-27	NA	41248674	41277957	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_41248825_41252859_41252959_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
ES_00050257	chr7	+	6365	7	NNC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	0	2479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	80.6818167591407	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTTGATTTTGATGCT	NA	False	NA	NA	False	NA	NA	NA	41248747	41280436	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_41248825_41261099_41261320_41261794_41261922_41262579_41262676_41274146_41274257_41274676_41277106_41277130
ES_00050262	chr7	+	3794	6	FSM	ENSMUSG00000074165.11	ENSMUST00000098508.9	3775	6	-19	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	16.2677595261302	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGTTCACTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	41282981	41300954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296914_41297042_41297242_41297304_41297616
ES_00050264	chr7	+	218	2	Antisense	novelGene_ENSMUSG00000083623.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3048	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACATTTTGTCAGAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	41697717	41702459	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_41697769_41702292
ES_00050268	chr7	+	5626	4	Fusion	ENSMUSG00000071952.4_ENSMUSG00000107181.2	novel	378	4	NA	NA	23	2816	multi-exon	FALSE	canonical	3	100	junction_3	9.20144916122817	75	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTGATGGTTCTTCTA	NA	False	NA	6	True	NA	NA	NA	42727497	42752083	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_+_42727598_42741712_42741840_42742038_42742100_42746745
ES_00050270	chr7	+	595	4	FSM	ENSMUSG00000064194.11	ENSMUST00000205912.2	595	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	171.371591059377	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAAAGCCTTTTTACAT	NA	False	NA	NA	False	NA	NA	NA	42763652	42839078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42763707_42836593_42836721_42836916_42836978_42838725
ES_00050271	chr7	+	2564	2	Genic_Genomic	ENSMUSG00000064194.11	novel	3112	4	NA	NA	-23813	93	multi-exon	TRUE	canonical	1	2	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACTCCCACTTTTTGGC	NA	False	NA	NA	False	NA	NA	NA	42803198	42841626	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_42803476_42839339
ES_00050272	chr7	+	3135	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	-23	0	-23	0	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTTAATTATG	NA	False	NA	NA	False	AATGAA	-10	NA	42826988	42841533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ES_00050273	chr7	+	383	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	-43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	195.192782198068	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAGACATAGTGGAGA	NA	False	NA	NA	False	NA	NA	NA	42827011	42839035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838956
ES_00050274	chr7	+	1841	4	Fusion	ENSMUSG00000064194.11_ENSMUSG00000074887.5	novel	578	5	NA	NA	0	441	multi-exon	FALSE	canonical	3	252	junction_3	92.0664011581979	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCAGGTTGGGGACACTC	NA	False	NA	6	True	AATAAA	-8	NA	42827046	42876707	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_+_42827128_42836593_42836721_42836916_42836978_42875135
ES_00050275	chr7	+	1464	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	-36	0	-36	0	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9962	False	NA	NA	False	NA	NA	NA	42863426	42876266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ES_00050276	chr7	+	1492	5	FSM	ENSMUSG00000074887.5	ENSMUST00000205748.2	1492	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	99.780697031039	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135
ES_00050277	chr7	+	597	2	NNC	ENSMUSG00000074887.5	novel	1386	3	NA	NA	1	14149	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGTGTGCATTTGGCCT	9999	False	NA	2	True	NA	NA	NA	42863463	42890415	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_42863572_42889926
ES_00050278	chr7	+	3137	3	FSM	ENSMUSG00000074887.5	ENSMUST00000163106.2	810	3	-1549	-778	-1549	269	multi-exon	FALSE	canonical	3	215	junction_2	22.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCATCAAGGTAGACAATC	NA	False	NA	NA	False	NA	NA	NA	42871449	42876535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42873126_42873324_42873386_42875135
ES_00050280	chr7	+	2677	4	Intergenic	novelGene_3701	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	80.425258608364	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACTCAGTATTGACAT	NA	False	NA	NA	False	NA	NA	NA	42903158	42915066	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42903292_42910109_42910237_42910431_42910493_42912710
ES_00050281	chr7	+	4678	4	Intergenic	novelGene_3702	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	96	junction_1	48.8739876280488	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCAGTATTGACATTTT	NA	False	NA	NA	False	NA	NA	NA	42904850	42915069	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42906982_42910109_42910237_42910431_42910493_42912710
ES_00050286	chr7	+	4290	4	FSM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	-17	221	-17	-221	multi-exon	FALSE	canonical	3	26	junction_1	1.24721912892465	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACAATATTTTCTT	7250	False	NA	NA	False	NA	NA	NA	43229016	43242438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43229191_43233491_43233721_43235777_43235905_43238678
ES_00050287	chr7	+	2378	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	-16	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2876	False	NA	7	True	AATAAA	-21	NA	43256632	43267709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ES_00050288	chr7	+	2385	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2843	False	NA	7	True	AATAAA	-15	NA	43256599	43267640	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ES_00050291	chr7	+	1772	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-249	-24	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.3245957266899	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACTCACAACTTCCTTG	NA	False	NA	-7	True	NA	NA	NA	43362573	43376934	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_43362686_43363202_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ES_00050298	chr7	+	954	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGTTCTGACATTCTC	NA	False	NA	7	True	AATAAA	-21	NA	43874783	43879042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
ES_00050307	chr7	+	3610	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	48.6095555306659	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896210	43901736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
ES_00050308	chr7	+	3338	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	-2	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896210	43901736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ES_00050309	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ES_00050311	chr7	+	2639	7	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	-4	0	intron_retention	FALSE	canonical	0	0	junction_2	315.509508573038	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896227	43901739	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ES_00050314	chr7	+	2301	2	FSM	ENSMUSG00000045411.17	ENSMUST00000188382.2	2301	2	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43899017	43901739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43899024_43899444
ES_00050317	chr7	+	871	5	FSM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	-7	0	-1	0	multi-exon	FALSE	canonical	3	36	junction_1	14.4460202131937	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTGCCTGGGCTCA	4800	False	NA	20	True	AATAAA	-12	NA	44117461	44121072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ES_00050319	chr7	+	922	6	FSM	ENSMUSG00000038695.14	ENSMUST00000118493.8	922	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	23.6016948543955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGCCTCAATAAATCTG	4834	False	NA	-7	True	NA	NA	NA	44117495	44121045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44117615_44117729_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ES_00050321	chr7	+	2459	6	FSM	ENSMUSG00000062785.15	ENSMUST00000209177.2	2960	6	233	268	11	-268	multi-exon	FALSE	canonical	1	1	junction_2	1.54919333848297	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCCCATCTGCCTCCCA	4124	False	NA	NA	False	NA	NA	NA	44240320	44250236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44241183_44244584_44245693_44247013_44247044_44247807_44248000_44248229_44248358_44250097
ES_00050330	chr7	+	2174	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	-8	18	0	-18	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACATCCCCCGAACTTC	9327	False	NA	72	True	NA	NA	NA	44506574	44512398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ES_00050332	chr7	+	1480	10	FSM	ENSMUSG00000011658.17	ENSMUST00000209039.2	1453	10	-27	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	26.1448954015034	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTCCCAGGCGCCCCCA	NA	False	NA	6	True	AATAAA	-17	NA	44545502	44550028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ES_00050337	chr7	+	1650	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	-63	54	-22	0	multi-exon	TRUE	canonical	3	134	junction_1	17.7458915433028	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACTCAGCTGCTACCAA	NA	False	NA	-38	True	NA	NA	NA	44647049	44651771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
ES_00050343	chr7	+	1814	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3085	False	NA	25	True	NA	NA	NA	44711879	44727634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ES_00050346	chr7	+	1209	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	-24	0	-13	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803713	44809488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ES_00050353	chr7	+	3412	11	FSM	ENSMUSG00000030796.18	ENSMUST00000107801.10	3396	11	-16	0	-12	0	multi-exon	FALSE	canonical	3	317	junction_7	23.9883304963059	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	5513	False	NA	NA	False	AATAAA	-13	NA	44865259	44883043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ES_00050364	chr7	+	2188	7	NIC	ENSMUSG00000003865.17	novel	480	5	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	83.740505266103	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	NA	False	NA	25	True	AATACA	-21	NA	45097050	45106043	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_45097078_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ES_00050366	chr7	+	278	1	Intergenic	novelGene_3716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTGTTTTGTTTTGT	918	False	NA	NA	False	NA	NA	NA	45129962	45130240	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45130000_45130200
ES_00050367	chr7	+	1597	10	FSM	ENSMUSG00000023467.19	ENSMUST00000107758.10	1597	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.8989880024427	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	6743	False	NA	17	True	AATAAA	-18	NA	45135787	45171806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45135908_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ES_00050369	chr7	+	792	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	4990	6	3784	-4	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAACTCTGTTCTGTGCG	5068	False	NA	11	True	AATAAA	-12	NA	45169015	45171800	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ES_00050371	chr7	+	646	3	FSM	ENSMUSG00000040428.20	ENSMUST00000210797.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	3	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	NA	False	NA	8	True	AATAAA	-17	NA	45199258	45203653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45199390_45202668_45202719_45203188
ES_00050372	chr7	+	593	2	FSM	ENSMUSG00000040428.20	ENSMUST00000211348.2	476	2	-53	-64	1	-2	multi-exon	FALSE	canonical	3	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTGTGACATTGTG	NA	False	NA	6	True	AATAAA	-15	NA	45199259	45203651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45199390_45203188
ES_00050381	chr7	+	1029	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	-2	0	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTCCTCTGTGTTCATTC	6008	False	NA	11	True	AATAAA	-18	NA	45367580	45370254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ES_00050385	chr7	+	1363	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211716.2	1350	5	-13	0	-13	0	multi-exon	TRUE	canonical	1	7	junction_4	97.5256376549264	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTCCCTGCCC	3984	False	NA	14	True	AATAAA	-18	NA	45522235	45533153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45530984_45532400
ES_00050388	chr7	+	2029	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209292.2	2026	7	-3	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	23.5401548187111	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5629	False	NA	7	True	AATAAA	-14	NA	45546501	45566837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45558745_45559026_45565506_45565697_45565834
ES_00050389	chr7	+	2456	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	10	0	10	0	multi-exon	FALSE	canonical	3	48	junction_2	6.94422221866655	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCTGGAGTAGTGTGG	5662	False	NA	3	True	AATAAA	-10	NA	45546534	45566833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ES_00050390	chr7	+	3054	15	FSM	ENSMUSG00000040189.19	ENSMUST00000210039.3	2598	15	-463	7	-320	0	multi-exon	FALSE	canonical	3	7	junction_9	4.94923205752	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAAGCCTGGTTCCTAC	2669	False	NA	5	True	AATAAA	-16	NA	45573175	45598380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
ES_00050392	chr7	+	1833	5	FSM	ENSMUSG00000006599.14	ENSMUST00000165031.8	673	5	-289	-871	-278	871	multi-exon	FALSE	canonical	3	28	junction_1	303.089920650621	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTACCCACTCTCAGGCC	4428	False	NA	NA	False	NA	NA	NA	46445248	46455322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384
ES_00050393	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4706	False	NA	4	True	AATAAA	-15	NA	46445526	46473224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ES_00050394	chr7	+	441	1	FSM	ENSMUSG00000109663.2	ENSMUST00000210610.2	415	1	-52	26	-52	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCGTTTTCACAAAGAACAC	NA	False	NA	NA	False	NA	NA	NA	46481835	46482276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_46481800_46482300
ES_00050397	chr7	+	1618	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	-30	0	30	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGCTGGTCAGTTTGATT	NA	False	NA	49	True	AATAAA	-45	NA	46495262	46505081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ES_00050404	chr7	+	385	1	FSM	ENSMUSG00000109051.2	ENSMUST00000208060.2	2990	1	-21	2626	-21	-2626	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGCTGCCTGTGCCT	4977	False	NA	NA	False	ATTAAA	-33	NA	48995820	48996205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_48995800_48996200
ES_00050408	chr7	+	1432	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	-14	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9880	False	NA	-5	True	NA	NA	NA	49408862	49423723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ES_00050409	chr7	+	1266	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9880	False	NA	-5	True	NA	NA	NA	49408862	49423723	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ES_00050410	chr7	+	1338	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9918	False	NA	-5	True	NA	NA	NA	49408900	49423723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ES_00050421	chr7	+	4316	31	FSM	ENSMUSG00000030447.16	ENSMUST00000085255.11	4195	31	-121	0	13	0	multi-exon	FALSE	canonical	3	23	junction_15	147.013453654948	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACCAGTTTCTTTTAA	NA	False	NA	5	True	NA	NA	NA	55491832	55580246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547572_55547721_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ES_00050425	chr7	+	3190	9	FSM	ENSMUSG00000025326.13	ENSMUST00000202945.4	3889	9	-7	706	-7	-706	multi-exon	FALSE	canonical	3	99	junction_1	45.7247197913776	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTATTTCTACTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	58878490	58938861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454
ES_00050427	chr7	+	9751	11	FSM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	-8	-4832	-7	23	multi-exon	FALSE	canonical	3	99	junction_1	51.6876194073591	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATATTTGCACCTGTATT	NA	False	NA	32	True	NA	NA	NA	58878490	58961307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ES_00050428	chr7	+	9856	13	FSM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	78.4443805083151	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTTGCTAGTATTTTG	NA	False	NA	9	True	NA	NA	NA	58878549	58961284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ES_00050437	chr7	+	2928	14	FSM	ENSMUSG00000030523.19	ENSMUST00000177102.8	2928	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACGCGCCTGCCTGTAT	NA	False	NA	85	True	ATTAAA	-12	NA	63835206	63874584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
ES_00050439	chr7	+	2580	11	FSM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	-5	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	225.867682504603	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGCTCTTTGACTCAT	NA	False	NA	NA	False	NA	NA	NA	63835297	63868483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
ES_00050447	chr7	+	532	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	103	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042522	64061869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_64042592_64049916_64050093_64061582
ES_00050451	chr7	+	1013	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	-12	2	-3	0	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACTTTTTATTTGCC	NA	False	NA	26	True	AATAAA	-26	NA	65343152	65351659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ES_00050456	chr7	+	4207	21	FSM	ENSMUSG00000030513.15	ENSMUST00000098391.11	4207	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	34.1808060174128	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAGGGGCTTGTAT	NA	False	NA	9	True	AATAAA	-14	NA	65511883	65700082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
ES_00050457	chr7	+	1183	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	-228	0	17	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710063	65724328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
ES_00050462	chr7	+	4287	3	FSM	ENSMUSG00000032640.11	ENSMUST00000036372.8	4176	3	-111	0	-111	0	multi-exon	FALSE	canonical	3	165	junction_1	21	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTTGTCTCATTATTT	NA	False	NA	29	True	AATAAA	-36	NA	65759151	65823546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65759976_65774989_65775486_65820579
ES_00050464	chr7	+	5097	8	FSM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	-9	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	19.3454102556442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGTGTCCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	66339696	66367004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359977_66360495_66361620_66361793_66363548
ES_00050466	chr7	+	3314	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208998.2	2110	3	-17	-1187	3	-1	multi-exon	FALSE	canonical	3	29	junction_1	27.5	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGAAACATGATTCTCC	NA	False	NA	NA	False	AATAAA	-14	NA	66872346	66878202	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_66872787_66873356_66873640_66875611
ES_00050471	chr7	+	12363	21	FSM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	-954	0	-954	0	multi-exon	FALSE	canonical	2	11	junction_1	3.59826347006441	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCCAGTTGGTT	NA	False	NA	5	True	AATAAA	-16	NA	67601620	67883416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_67602701_67653557_67654104_67814740_67815054_67819644_67819797_67822978_67823124_67833091_67833307_67834478_67834606_67836737_67836977_67839320_67839489_67839693_67839899_67843094_67843379_67844716_67844854_67845337_67845498_67850991_67851095_67851649_67851721_67856998_67857229_67857510_67857622_67861741_67861905_67864666_67864797_67868149_67868285_67875767
ES_00050486	chr7	+	2042	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	-38	3	-31	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545643	78558126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
ES_00050487	chr7	+	2230	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545756	78558126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
ES_00050497	chr7	+	6874	6	FSM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-103	-3165	-83	822	multi-exon	TRUE	canonical	2	5	junction_5	149.360503480673	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATCTCCATCATATATAT	NA	False	NA	NA	False	TTTAAA	-2	NA	79674478	79744743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79738282_79738381_79740082
ES_00050498	chr7	+	2257	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-12	4989	8	-5	5prime_fragment	FALSE	canonical	3	198	junction_1	67.6214955961983	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTCTACACGTTGAGT	NA	False	NA	-4	True	AATAAA	-4	NA	79674569	79736589	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
ES_00050499	chr7	+	2194	4	FSM	ENSMUSG00000048897.16	ENSMUST00000206039.2	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	115.519118186847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACGTTGAGTGCTGT	NA	False	NA	1	True	AATAAA	-9	NA	79676134	79736594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181
ES_00050501	chr7	+	3949	15	FSM	ENSMUSG00000030539.14	ENSMUST00000032754.9	3949	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	17.3394972033593	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGAGGCTCTCCTTTGCTT	NA	False	NA	-50	True	AATATA	-15	NA	79836588	79876275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79836740_79848266_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
ES_00050505	chr7	+	1867	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	-32	-126	-27	126	multi-exon	FALSE	canonical	3	448	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCTGTCCAACAAAAGCC	NA	False	NA	NA	False	ATTAAA	-22	NA	79910935	79915248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79911680_79914125
ES_00050509	chr7	+	2424	21	NIC	ENSMUSG00000030534.14	novel	2554	23	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	38.8940548156142	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCTCTCTCTCTCTCT	NA	False	NA	2	True	AATAAA	-6	NA	79919429	79941312	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_79919828_79923976_79924058_79924371_79924434_79929719_79929782_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ES_00050525	chr7	+	2006	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	26983	0	26983	0	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	9992	False	NA	11	True	AATAAA	-20	NA	80791580	80820164	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ES_00050533	chr7	+	3069	10	FSM	ENSMUSG00000045795.11	ENSMUST00000165460.2	3069	10	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_8	9.86576572463249	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTCGTTTCCAGAGGCC	6984	False	NA	NA	False	ATTAAA	-15	NA	81221039	81246584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_81221658_81224293_81224468_81227898_81228050_81234849_81235020_81235881_81236048_81239085_81239274_81241509_81241597_81241754_81241851_81243399_81243869_81245634
ES_00050535	chr7	+	1418	3	FSM	ENSMUSG00000038646.14	ENSMUST00000118190.2	1391	3	-16	-11	-16	0	multi-exon	FALSE	canonical	1	3	junction_1	414	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	AATAAA	-30	NA	81413014	81419239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_81413113_81417274_81417472_81418116
ES_00050536	chr7	+	2147	10	FSM	ENSMUSG00000038623.10	ENSMUST00000041890.8	2226	10	79	0	-38	0	multi-exon	TRUE	canonical	3	11	junction_7	3.33703498170693	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTTATTAATTTTGAAG	NA	False	NA	NA	False	AATAAA	-25	NA	81508827	81533819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_81509289_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
ES_00050539	chr7	+	1486	9	FSM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	89.2394951801051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824697	81956627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ES_00050540	chr7	+	1530	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-30762	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	100.011249367259	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81889331	81956627	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_81889439_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ES_00050541	chr7	+	2475	15	FSM	ENSMUSG00000038563.15	ENSMUST00000125245.8	2453	15	-22	0	-7	0	multi-exon	FALSE	canonical	3	42	junction_1	27.9482028190781	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTACTGGTTTGCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	82297814	82347892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
ES_00050543	chr7	+	3622	20	FSM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-12	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	22.1664566531058	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297836	82427060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
ES_00050544	chr7	+	1440	3	FSM	ENSMUSG00000038563.15	ENSMUST00000207868.2	1537	3	97	0	97	0	multi-exon	FALSE	canonical	3	145	junction_1	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82298437	82308234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_82298840_82301088_82301157_82307264
ES_00050550	chr7	+	4477	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	5	10	3	-10	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACCCTATCTTTATT	NA	False	NA	NA	False	TTTAAA	-31	NA	83541212	83550730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_83541684_83544737_83544971_83546957
ES_00050561	chr7	+	4125	20	NIC	ENSMUSG00000039361.12	novel	3528	21	NA	NA	16	348	combination_of_known_junctions	FALSE	canonical	3	16	junction_12	45.9396207370349	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTTTTAAATTAAGAAT	NA	False	NA	13	True	ATTAAA	-24	NA	89779453	89858659	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ES_00050562	chr7	+	3372	20	FSM	ENSMUSG00000039361.12	ENSMUST00000208742.2	3361	20	-9	-2	0	0	multi-exon	FALSE	canonical	3	16	junction_12	48.3518384036048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTACGGTGTTCTGGTTTG	NA	False	NA	19	True	AATAAA	-20	NA	89779702	89858140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ES_00050567	chr7	+	1586	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	10	0	10	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210366	92231502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ES_00050581	chr7	+	3204	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-8	5	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	91.9439732384675	50	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTAGTTTCTGGTCCTT	972	False	NA	31	True	AATAAA	-19	NA	97130201	97190607	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_97130358_97134126_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ES_00050585	chr7	+	3481	16	NNC	ENSMUSG00000030774.14	novel	2794	15	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	74.1309352130105	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGTGTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	97437762	97561588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_97438182_97480061_97480266_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ES_00050586	chr7	+	3415	15	NIC	ENSMUSG00000030774.14	novel	2794	15	NA	NA	-126	0	combination_of_known_splicesites	TRUE	canonical	3	45	junction_1	51.4204358644479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGTGTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	97437621	97561588	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_97438182_97503645_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ES_00050587	chr7	+	2794	15	FSM	ENSMUSG00000030774.14	ENSMUST00000206984.2	2794	15	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	35.6279671159656	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAGCATTGAGAGATT	NA	False	NA	NA	False	NA	NA	NA	97437747	97561090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_97438182_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ES_00050589	chr7	+	3071	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	-6	0	-6	0	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGTGTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	97492135	97561588	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ES_00050591	chr7	+	3723	5	FSM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	20.5791156272567	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGGTGAGGTGTTTTTG	NA	False	NA	12	True	AATAAA	-19	NA	98352309	98367269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362103_98364188
ES_00050594	chr7	+	1640	5	FSM	ENSMUSG00000015957.13	ENSMUST00000167303.8	1792	5	152	0	99	0	multi-exon	FALSE	canonical	3	14	junction_3	5.21416340365355	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTTCAATCCCTCTTT	1306	False	NA	NA	False	TATAAA	-24	NA	98488203	98502958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_98488398_98495580_98495817_98496380_98496659_98499433_98499727_98502319
ES_00050601	chr7	+	1590	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	41	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTAAGACATTCGCCTCA	NA	False	NA	-1	True	NA	NA	NA	99808487	99810567	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_99808955_99809380_99809666_99809729
ES_00050607	chr7	+	4840	25	FSM	ENSMUSG00000047248.21	ENSMUST00000119647.9	4840	25	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_24	10.4979329976059	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGTGAACATAGTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	100045005	100103648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100045052_100048874_100049023_100055164_100055314_100056068_100056279_100056923_100057037_100059538_100059658_100062532_100062656_100065255_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081177_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103497
ES_00050608	chr7	+	4012	8	FSM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	-24	0	-24	0	multi-exon	TRUE	canonical	3	366	junction_1	56.4938140012529	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCAGGGTTTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100142519	100151227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ES_00050611	chr7	+	1391	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGTCTGCTTCTCAT	7571	False	NA	NA	False	NA	NA	NA	100186306	100189576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100186400_100188278
ES_00050614	chr7	+	3218	8	FSM	ENSMUSG00000030704.15	ENSMUST00000098252.5	3110	8	-108	0	-4	0	multi-exon	FALSE	canonical	3	254	junction_3	204.582800960832	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGTTCACATTCTTTATT	NA	False	NA	11	True	AATAAA	-19	NA	100256788	100290475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100278872_100278979_100280948_100281061_100283851_100283946_100285901_100285969_100288461
ES_00050617	chr7	+	6605	8	FSM	ENSMUSG00000029461.18	ENSMUST00000207875.2	4077	8	-71	-2457	14	-17	multi-exon	TRUE	canonical	3	35	junction_2	3.48173074484398	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACCAACAAAAACCA	NA	False	NA	NA	False	ATTAAA	-23	NA	100355855	100490846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
ES_00050619	chr7	+	774	7	FSM	ENSMUSG00000030691.16	ENSMUST00000145802.8	3133	7	0	2359	0	1706	multi-exon	FALSE	canonical	0	0	junction_4	10.2577883689527	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACGCCCTGAATATTTGT	NA	False	NA	NA	False	NA	NA	NA	100758011	100847816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100840873_100841008_100846086_100846142_100847687
ES_00050625	chr7	+	3626	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	17	50	17	-50	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTGCCATCTGTGACC	NA	False	NA	NA	False	NA	NA	NA	101043591	101061743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ES_00050627	chr7	+	4656	17	FSM	ENSMUSG00000001829.18	ENSMUST00000106998.8	2287	17	7	-2376	7	18	multi-exon	FALSE	canonical	2	6	junction_4	246.748226943984	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGCCATATGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	101312918	101439393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101360617_101360708_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
ES_00050633	chr7	+	538	2	FSM	ENSMUSG00000030649.19	ENSMUST00000146286.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCATAGGATTTCGGGGG	7817	False	NA	NA	False	GATAAA	-33	NA	101545614	101547434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101545658_101546939
ES_00050634	chr7	+	957	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	-20	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7817	False	NA	19	True	AATAAA	-19	NA	101545614	101548745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
ES_00050635	chr7	+	1260	6	NIC	ENSMUSG00000030649.19	novel	818	5	NA	NA	-4	0	intron_retention	FALSE	canonical	3	43	junction_1	203.291318063512	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	8268	False	NA	19	True	AATAAA	-19	NA	101546065	101548745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_101546568_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ES_00050642	chr7	+	7092	25	NIC	ENSMUSG00000066306.14	novel	2862	14	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	160	junction_1	65.3807226091062	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAAGCTCTTTGGGTCAG	2093	False	NA	33	True	AATAAA	-21	NA	101583317	101664167	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_101583383_101626586_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
ES_00050644	chr7	+	3144	11	FSM	ENSMUSG00000100254.2_ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	-165	-681	0	0	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714799	101732969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ES_00050652	chr7	+	2032	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	0	2	0	-2	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGTAGGTATGTTGCT	594	False	NA	14	True	AATAAA	-21	NA	101872234	101887772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ES_00050654	chr7	+	2136	7	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	61.1201003489578	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGTAGGTATGTTGCT	649	False	NA	14	True	AATAAA	-21	NA	101872289	101887772	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ES_00050658	chr7	+	1436	3	FSM	ENSMUSG00000030987.6	ENSMUST00000210834.2	1436	3	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACCCTACCAAGTAGTA	2651	False	NA	NA	False	NA	NA	NA	102075179	102077455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_102075348_102075906_102076008_102076288
ES_00050662	chr7	+	3843	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	-16	0	-14	0	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGACTTGAAGGTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	103867985	103884359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
ES_00050664	chr7	+	1096	8	NIC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	0	-597	intron_retention	FALSE	canonical	2	115	junction_1	215.402423574185	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGTCCTGTCGAAAAA	NA	False	NA	NA	False	NA	NA	NA	103868635	103881608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
ES_00050665	chr7	+	2548	8	FSM	ENSMUSG00000056144.15	ENSMUST00000106849.9	2578	8	30	0	-6	0	multi-exon	TRUE	canonical	1	1	junction_3	5.31843156256751	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGAATCTGTTCATT	NA	False	NA	7	True	ATTAAA	-15	NA	103893693	103911441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_103893800_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
ES_00050669	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	105289654	105291050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ES_00050671	chr7	+	529	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTCTTGTCTTCAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	105289757	105291056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
ES_00050675	chr7	+	2278	8	FSM	ENSMUSG00000030890.17	ENSMUST00000149695.8	2278	8	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	37.712121150005	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGGCTCGTGTGGGGA	NA	False	NA	21	True	AATAAA	-11	NA	105385877	105392125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105390251_105390354_105391116_105391203_105391304_105391413_105391545_105391719
ES_00050686	chr7	+	3817	7	FSM	ENSMUSG00000062542.12	ENSMUST00000073459.12	3817	7	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	10.4628974104797	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCGTTGTCTCATTAAAT	NA	False	NA	NA	False	AGTAAA	-19	NA	106969996	107147863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_106970355_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
ES_00050688	chr7	+	3503	24	NIC	ENSMUSG00000036528.17	novel	3310	25	NA	NA	-167	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	7.22105721461798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTGTGAAACATTTTTA	7078	False	NA	NA	False	AATAAA	-16	NA	107194246	107344092	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773_107296906_107307986_107308080_107313792_107313905_107315842_107315905_107316911_107316988_107318414_107318519_107320537_107320606_107321310_107321369_107322143_107322186_107326850_107326993_107328345_107328473_107329027_107329157_107337047_107337199_107337481_107337594_107337807_107337897_107338393_107338517_107339714_107339841_107342112_107342302_107343383
ES_00050698	chr7	+	1596	2	FSM	ENSMUSG00000046364.15	ENSMUST00000132877.2	1596	2	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAAAACCACACCAG	NA	False	NA	NA	False	NA	NA	NA	109118402	109120360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_109118430_109118791
ES_00050703	chr7	+	1883	8	FSM	ENSMUSG00000066232.5	ENSMUST00000208951.2	1883	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	376.224422820383	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCTTGATCTGATT	7239	False	NA	21	True	ATTAAA	-16	NA	109617521	109655322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_109617716_109626277_109626356_109642035_109642093_109643615_109643693_109650680_109650735_109651917_109652125_109653206_109653324_109654223
ES_00050706	chr7	+	3017	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	-14	0	-14	0	multi-exon	TRUE	canonical	3	81	junction_4	55.3423285861133	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660902	109694594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ES_00050708	chr7	+	3419	11	FSM	ENSMUSG00000031016.10	ENSMUST00000033326.10	3419	11	0	0	0	0	multi-exon	TRUE	canonical	3	352	junction_6	26.6084573021436	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTAAATCTTCACGGTG	NA	False	NA	26	True	ATTAAA	-23	NA	109721252	109742493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
ES_00050712	chr7	+	3495	15	FSM	ENSMUSG00000005686.18	ENSMUST00000170374.8	3489	15	-6	0	-6	0	multi-exon	FALSE	canonical	3	40	junction_1	9.21539306745812	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGAACTTTAGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	110367406	110411126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
ES_00050715	chr7	+	6005	29	FSM	ENSMUSG00000059263.10	ENSMUST00000215510.2	4697	29	-259	-1049	-257	-129	multi-exon	FALSE	canonical	3	115	junction_12	65.7666231799216	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTAATCTCCTGACTA	NA	False	NA	NA	False	NA	NA	NA	111622453	111710739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111679378_111679439_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
ES_00050716	chr7	+	5540	28	FSM	ENSMUSG00000059263.10	ENSMUST00000106653.4	5540	28	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_11	29.763171284045	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTTATCTTAGTCATT	NA	False	NA	4	True	AATAAA	-16	NA	111622710	111710591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
ES_00050718	chr7	+	5707	29	FSM	ENSMUSG00000059263.10	ENSMUST00000210309.2	5816	29	-20	129	0	-129	multi-exon	FALSE	canonical	1	5	junction_1	94.014836812156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTAATCTCCTGACTA	NA	False	NA	NA	False	NA	NA	NA	111622751	111710739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_111622954_111646133_111646194_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
ES_00050726	chr7	+	2847	20	NNC	ENSMUSG00000055116.9	novel	2908	20	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_12	18.7486656958292	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3805	False	NA	NA	False	AATAAA	-20	NA	112806729	112913333	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898396_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ES_00050727	chr7	+	2588	18	NIC	ENSMUSG00000055116.9	novel	2908	20	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	22.9333319921676	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3813	False	NA	NA	False	AATAAA	-20	NA	112806737	112913333	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_112806852_112833830_112833904_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ES_00050728	chr7	+	4962	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	0	0	0	0	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTACTCCTTTGCAA	NA	False	NA	14	True	AATAAA	-22	NA	113113040	113170718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ES_00050729	chr7	+	3973	13	FSM	ENSMUSG00000030759.17	ENSMUST00000164745.8	3972	13	-1	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	119.775136540658	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGGCAAAACTGTATT	NA	False	NA	2	True	AATAAA	-16	NA	113113067	113169665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_113113236_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ES_00050730	chr7	+	4167	3	FSM	ENSMUSG00000030759.17	ENSMUST00000155183.2	775	3	-32	-3360	-32	-1	multi-exon	FALSE	canonical	2	280	junction_1	80.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGATGTACTCCTTTGCA	NA	False	NA	13	True	AATAAA	-21	NA	113160089	113170717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_113160713_113165591_113165720_113167301
ES_00050732	chr7	+	5690	16	FSM	ENSMUSG00000030671.10	ENSMUST00000032909.9	6573	16	0	883	0	-883	multi-exon	FALSE	canonical	3	54	junction_14	11.2573926327942	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGTGAGGAATTTTCAT	NA	False	NA	NA	False	ATTAAA	-26	NA	114014515	114137603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_114015698_114090674_114090726_114093720_114093970_114097146_114097287_114105421_114105529_114107329_114107541_114108073_114108148_114117515_114117656_114118746_114118885_114120898_114121011_114122567_114122682_114126015_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
ES_00050742	chr7	+	708	5	NIC	ENSMUSG00000030659.15	novel	563	5	NA	NA	1551	-7	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	28.3229147511339	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAGAACACACGTTT	NA	False	NA	NA	False	AATAAA	-37	NA	116129597	116139812	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_116129827_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ES_00050744	chr7	+	6948	10	FSM	ENSMUSG00000033904.17	ENSMUST00000123178.8	6948	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_7	11.6619037896906	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118320837	118336239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616
ES_00050753	chr7	+	527	3	FSM	ENSMUSG00000030924.17	ENSMUST00000208789.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	9	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTTCCTCCTCTTAG	NA	False	NA	13	True	AATAAA	-13	NA	119443087	119448162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_119443288_119444605_119444725_119447954
ES_00050757	chr7	+	1072	4	NNC	ENSMUSG00000030922.13	novel	875	4	NA	NA	-118	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	28.2410261066335	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTGTTTTGTTGATT	NA	False	NA	10	True	TATAAA	-21	NA	119495396	119515977	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_119495470_119508893_119509186_119513395_119513489_119515363
ES_00050758	chr7	+	1064	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	3	2	3	1	multi-exon	FALSE	canonical	3	10	junction_1	24.9977776790036	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTGTTTTGTTGATT	NA	False	NA	10	True	TATAAA	-21	NA	119499333	119515977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_119499532_119509026_119509186_119513395_119513489_119515363
ES_00050764	chr7	+	730	3	ISM	ENSMUSG00000046096.8	ENSMUST00000208627.2	345	4	-60	3819	0	3	5prime_fragment	FALSE	canonical	3	73	junction_1	59	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAGGTGAAGGCAGTC	NA	False	NA	15	True	AATAAA	-21	NA	120276842	120325898	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_120276936_120277012_120277094_120325342
ES_00050765	chr7	+	4500	3	FSM	ENSMUSG00000046096.8	ENSMUST00000060175.8	4831	3	0	331	0	252	multi-exon	FALSE	canonical	3	80	junction_2	55.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACCTGGCCTCCTGGTTG	NA	False	NA	NA	False	NA	NA	NA	120276853	120333746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_120277094_120325342_120325556_120329699
ES_00050766	chr7	+	2352	3	NIC	ENSMUSG00000046096.8	novel	4831	3	NA	NA	6	-2	intron_retention	FALSE	canonical	3	16	junction_2	87.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTTCTATTACTTTTAA	NA	False	NA	NA	False	AATAAA	-22	NA	120276859	120333492	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_120277094_120325342_120325556_120331587
ES_00050772	chr7	+	3401	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	2	-8	intron_retention	TRUE	canonical	0	0	junction_21	76.9953616413724	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTAAGTCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	120517008	120546647	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
ES_00050773	chr7	+	3381	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	16	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	99.6493398357722	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTAAACTAAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	120517022	120546644	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530486_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
ES_00050775	chr7	+	1702	5	NNC	ENSMUSG00000030876.8	novel	1823	5	NA	NA	118	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	108.278287297131	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	9545	False	NA	7	True	AATAAA	-16	NA	120633785	120676058	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675355
ES_00050778	chr7	+	3300	5	FSM	ENSMUSG00000030870.13	ENSMUST00000148060.7	3300	5	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	31.2489999839995	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATGTTGTCCCCATTGT	NA	False	NA	NA	False	NA	NA	NA	121666430	121676855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_121666708_121666886_121668213_121670924_121670991_121671132_121671239_121675330
ES_00050780	chr7	+	2530	5	FSM	ENSMUSG00000030868.7	ENSMUST00000123602.2	2506	5	-24	0	-11	0	multi-exon	FALSE	canonical	3	258	junction_4	38.4740172064213	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732252	121748267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ES_00050781	chr7	+	2205	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	-6	0	-6	0	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	56	True	ATTAAA	-14	NA	121758655	121769096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ES_00050787	chr7	+	5591	23	NIC	ENSMUSG00000052707.9	novel	8183	24	NA	NA	0	-993	combination_of_known_junctions	TRUE	canonical	3	27	junction_8	33.5151686393731	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGCCGGACTGATGTCA	NA	False	NA	NA	False	NA	NA	NA	122723403	122791960	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122768758_122771342_122772455_122772633_122773366_122773543_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
ES_00050793	chr7	+	2022	15	FSM	ENSMUSG00000030769.16	ENSMUST00000167299.9	2022	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	7.1332077679838	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGGTGAGCCAGGAAAC	NA	False	NA	-35	True	NA	NA	NA	122834842	122872426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
ES_00050804	chr7	+	2234	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028237	126045073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
ES_00050805	chr7	+	742	3	FSM	ENSMUSG00000030727.13	ENSMUST00000141764.2	742	3	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_2	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCCAGCTGTTTGGGAG	NA	False	NA	NA	False	NA	NA	NA	126028270	126035305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126028329_126028747_126028958_126034831
ES_00050806	chr7	+	2290	12	FSM	ENSMUSG00000030727.13	ENSMUST00000106405.2	2279	12	-11	0	1	0	multi-exon	FALSE	canonical	3	161	junction_3	14.2272001159925	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028600	126045073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
ES_00050808	chr7	+	1863	9	FSM	ENSMUSG00000073838.11	ENSMUST00000106392.10	1754	9	-107	-2	-90	2	multi-exon	FALSE	canonical	3	611	junction_6	24.9646625252576	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCTTGTGTCTTCTGTGT	NA	False	NA	6	True	AATAAA	-23	NA	126086442	126089905	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126089084_126089492
ES_00050809	chr7	+	1679	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	0	True	AATAAA	-17	NA	126086532	126089899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
ES_00050814	chr7	+	472	5	FSM	ENSMUSG00000030714.15	ENSMUST00000126570.8	460	5	-12	0	-9	0	multi-exon	FALSE	canonical	3	13	junction_2	209.080576572765	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAACCGCCAAGACTGA	102	False	NA	NA	False	NA	NA	NA	126248471	126264122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126248650_126260223_126260321_126261737_126261824_126263100_126263177_126264087
ES_00050815	chr7	+	1312	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	-9	9	-9	-9	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTTTTGCATGTTTGT	102	False	NA	NA	False	AATACA	-9	NA	126248471	126272088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ES_00050816	chr7	+	785	6	FSM	ENSMUSG00000030714.15	ENSMUST00000152231.8	786	6	0	1	0	-1	multi-exon	FALSE	canonical	3	419	junction_3	35.8920604033817	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTGTGCCTGACTGC	149	False	NA	NA	False	NA	NA	NA	126248518	126271052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709
ES_00050818	chr7	+	511	4	FSM	ENSMUSG00000030714.15	ENSMUST00000129786.3	511	4	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_3	8.64098759787715	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGTCTTCTCGTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	126270748	126271564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126270840_126270905_126271053_126271209_126271246_126271327
ES_00050825	chr7	+	563	3	FSM	ENSMUSG00000030703.9	ENSMUST00000205910.2	606	3	0	43	0	-39	multi-exon	TRUE	canonical	3	9	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTTCTCTTAAAAAATA	NA	False	NA	-27	True	NA	NA	NA	126367691	126374778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126367876_126370159_126370386_126374625
ES_00050827	chr7	+	1070	5	FSM	ENSMUSG00000042675.16	ENSMUST00000170882.8	1050	5	-20	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	86.5462304205099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCCTGGCTCACATGG	8221	False	NA	14	True	AATAAA	-15	NA	126376126	126379683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126376376_126376942_126377126_126377225_126377270_126377477_126377587_126379198
ES_00050828	chr7	+	1596	4	FSM	ENSMUSG00000042675.16	ENSMUST00000106357.8	1594	4	-2	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	13.6381816969859	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	8265	False	NA	17	True	AATAAA	-18	NA	126376170	126379686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126377126_126377225_126377270_126377477_126377587_126379198
ES_00050833	chr7	+	2593	3	FSM	ENSMUSG00000042606.10	ENSMUST00000150942.2	937	3	-2	-1654	-2	2	multi-exon	FALSE	canonical	3	200	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCTCAGGCTCAGTTC	1966	False	NA	10	True	NA	NA	NA	126461633	126464551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126461689_126461771_126462099_126462340
ES_00050836	chr7	+	1686	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	-10	0	-10	0	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGACTCTCGGGTGAG	NA	False	NA	25	True	AATAAA	-17	NA	126528040	126544803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
ES_00050842	chr7	+	804	7	FSM	ENSMUSG00000030672.13	ENSMUST00000206772.2	653	7	-152	1	-143	0	multi-exon	FALSE	canonical	3	19	junction_1	719.114598346853	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	99	False	NA	31	True	AATAAA	-23	NA	126807918	126813459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126808124_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ES_00050843	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	2960	False	NA	42	True	AATAAA	-34	NA	126810779	126813470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ES_00050845	chr7	+	800	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-174	-2	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGGTGGCAATTTCAGT	3857	False	NA	29	True	AATAAA	-21	NA	126811676	126813457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ES_00050846	chr7	+	641	7	NNC	ENSMUSG00000030672.13	novel	268	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	712.609621196783	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGTGGCAATTTCAGTG	4031	False	NA	30	True	AATAAA	-22	NA	126811850	126813458	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_126811894_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ES_00050847	chr7	+	556	5	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1506	12	0	-1	3prime_fragment	FALSE	canonical	3	1768	junction_4	19.9311314279947	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGTGGCAATTTCAGTG	4466	False	NA	30	True	AATAAA	-22	NA	126812285	126813458	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ES_00050851	chr7	+	1484	3	FSM	ENSMUSG00000054716.5	ENSMUST00000052509.6	1484	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	20	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACGATGCCTGTAAGTGA	NA	False	NA	31	True	AATAAA	-16	NA	126843445	126853975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126843781_126844156_126844307_126852976
ES_00050852	chr7	+	356	2	Genic_Genomic	ENSMUSG00000108483.2	novel	955	3	NA	NA	-486	185	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTGAAAAACCAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	127033107	127038749	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_127033159_127038444
ES_00050859	chr7	+	2074	12	ISM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	658	4	0	0	3prime_fragment	FALSE	canonical	3	60	junction_1	50.8389126685683	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTCTGACTCCTTTG	NA	False	NA	5	True	TATAAA	-10	NA	127070200	127075927	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ES_00050860	chr7	+	2599	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	-200	3	-159	0	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTCTGACTCCTTTG	NA	False	NA	5	True	TATAAA	-10	NA	127070461	127075927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ES_00050861	chr7	+	2269	11	NIC	ENSMUSG00000030822.16	novel	2402	11	NA	NA	51	-19	combination_of_known_junctions	FALSE	canonical	2	49	junction_10	56.3490017657811	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTATAAAGTTTTCAATA	NA	False	NA	-14	True	NA	NA	NA	127070712	127075908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075615
ES_00050864	chr7	+	817	3	FSM	ENSMUSG00000030822.16	ENSMUST00000132124.2	944	3	127	0	109	0	multi-exon	FALSE	canonical	3	200	junction_2	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTCTGACTCCTTTGTG	NA	False	NA	7	True	TATAAA	-12	NA	127074799	127075929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127075171_127075393_127075466_127075555
ES_00050866	chr7	+	2650	11	FSM	ENSMUSG00000042423.10	ENSMUST00000048896.8	2650	11	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_2	6.82348884369279	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCGGCTCCTCTTTGAG	560	False	NA	36	True	TATAAA	-30	NA	127084392	127090685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ES_00050871	chr7	+	9633	31	FSM	ENSMUSG00000053877.13	ENSMUST00000190390.7	9633	31	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_18	12.020769063953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCAGCCCCTTCACTTA	NA	False	NA	NA	False	NA	NA	NA	127115319	127159941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128306_127128397_127129354_127129532_127129611_127129971_127130065_127130244_127130506_127130644_127130891_127131062_127131198_127131392_127133719_127133857_127133946_127134134_127137172_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139
ES_00050874	chr7	+	1594	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	-24	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTCTGCTGTCTAGT	NA	False	NA	26	True	AATAAA	-27	NA	127172551	127182479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ES_00050875	chr7	+	1448	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAGCCAGTGCCATGT	NA	False	NA	14	True	AATAAA	-15	NA	127172566	127182467	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ES_00050876	chr7	+	1840	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172700	127182477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ES_00050877	chr7	+	1696	8	NIC	ENSMUSG00000030815.12	novel	1840	9	NA	NA	-25	-1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	43.6965416835479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCCATGTCTGCTGTCT	NA	False	NA	23	True	AATAAA	-24	NA	127172788	127182476	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127173139_127176706_127176883_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ES_00050878	chr7	+	5356	20	FSM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	0	-77	0	77	multi-exon	FALSE	canonical	3	259	junction_5	49.1177002358039	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGTGTTCCTGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	127187938	127204048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ES_00050884	chr7	+	3410	11	FSM	ENSMUSG00000030811.15	ENSMUST00000033081.14	3410	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	25.7536405193518	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCCAGTTTGGCTCTTC	1533	False	NA	4	True	NA	NA	NA	127345946	127368100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ES_00050887	chr7	+	2619	9	FSM	ENSMUSG00000030811.15	ENSMUST00000188580.3	2601	9	-18	0	-18	0	multi-exon	FALSE	canonical	2	12	junction_3	39.2681088798531	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAGTGTTACTTGAAC	2887	False	NA	11	True	NA	NA	NA	127347300	127367899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127347623_127348881_127349026_127349152_127349240_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ES_00050888	chr7	+	3774	10	FSM	ENSMUSG00000030811.15	ENSMUST00000206893.2	3449	10	-145	-180	-18	180	multi-exon	FALSE	canonical	3	25	junction_5	29.4282974593846	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAGCAAAGTCCCAGCA	2887	False	NA	NA	False	NA	NA	NA	127347300	127368835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ES_00050892	chr7	+	2268	6	ISM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	-54	1	-54	-1	intron_retention	TRUE	canonical	3	82	junction_2	5.54977477020464	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTACCTTTTACCC	1830	False	NA	13	True	AATAAA	-14	NA	127399721	127402973	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407
ES_00050896	chr7	+	6310	3	FSM	ENSMUSG00000049739.11	ENSMUST00000050383.8	6310	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	27	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTGGTGTGGTTATATC	1663	False	NA	20	True	AAAACA	-19	NA	127476872	127485168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127477280_127477741_127483091_127484614
ES_00050900	chr7	+	1013	3	FSM	ENSMUSG00000030801.11	ENSMUST00000206071.2	1014	3	1	0	1	0	multi-exon	FALSE	canonical	3	295	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAAAGTATGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	127511688	127515262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127511915_127514399_127514475_127514550
ES_00050902	chr7	+	1813	10	ISM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	15	74	15	-74	intron_retention	FALSE	canonical	3	295	junction_2	14.4666495988976	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGAGGTACGCAGAGAT	NA	False	NA	18	True	AGTAAA	-19	NA	127511702	127524935	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280
ES_00050903	chr7	+	261	2	Antisense	novelGene_ENSMUSG00000070371.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	279	junction_1	0	321	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTAAAAAGATTATTATG	8775	False	NA	NA	False	AAAAAG	-45	NA	127539002	127541902	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_127539055_127541693
ES_00050905	chr7	+	2378	6	FSM	ENSMUSG00000030795.19	ENSMUST00000174196.8	2374	6	-4	0	-3	0	multi-exon	FALSE	canonical	3	619	junction_3	88.8603398598047	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAAAACCAACCC	1180	False	NA	NA	False	NA	NA	NA	127566658	127573499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725
ES_00050906	chr7	+	1834	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	-3	0	-3	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1180	False	NA	37	True	ATTAAA	-20	NA	127566658	127581204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ES_00050909	chr7	+	761	3	FSM	ENSMUSG00000030795.19	ENSMUST00000141997.2	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1177	junction_2	88.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAAACATCATTTTAG	5487	False	NA	12	True	NA	NA	NA	127579355	127581179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127579419_127580362_127580464_127580582
ES_00050911	chr7	+	3834	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGGGGTCGTCTG	NA	False	NA	10	True	ATTAAA	-21	NA	127836528	127844272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
ES_00050914	chr7	+	4734	20	FSM	ENSMUSG00000042105.19	ENSMUST00000043138.13	4734	20	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_6	8.64088073894081	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATGCTGTAGCCTTTTT	7176	False	NA	NA	False	ATTAAA	-3	NA	128213083	128298149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
ES_00050916	chr7	+	2917	6	FSM	ENSMUSG00000042105.19	ENSMUST00000118605.2	3220	6	303	0	303	0	multi-exon	FALSE	canonical	2	3	junction_1	25.8534330408942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGCGTATGAGAATTTC	NA	False	NA	15	True	ATTAAA	-21	NA	128290515	128297998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_128290971_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
ES_00050918	chr7	+	4509	19	FSM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	-4	0	-4	0	multi-exon	TRUE	canonical	3	121	junction_10	14.275615919341	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTCTCTCCCTGTTTC	1927	False	NA	23	True	AATAAA	-35	NA	128346662	128386560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151
ES_00050922	chr7	+	3936	16	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-56	-1	intron_retention	FALSE	canonical	3	48	junction_1	73.3327272702229	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGAGTGTGGCTGTGAGT	NA	False	NA	28	True	AATAAA	-40	NA	130247602	130366513	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ES_00050924	chr7	+	3934	17	NNC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	69	-1	intron_retention	FALSE	canonical	2	7	junction_8	88.2561745361196	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGAGTGTGGCTGTGAGT	NA	False	NA	28	True	AATAAA	-40	NA	130247727	130366513	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342572_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ES_00050925	chr7	+	3306	16	FSM	ENSMUSG00000030852.19	ENSMUST00000209108.2	3310	16	0	4	0	-4	multi-exon	FALSE	canonical	3	9	junction_15	96.4575669515991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTAGTCATTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-9	NA	130247972	130363175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130362905
ES_00050927	chr7	+	3693	15	FSM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	-250	21	-41	0	multi-exon	FALSE	canonical	3	28	junction_1	76.8787808096324	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTTCTTTGAGTCTTGG	NA	False	NA	8	True	AATAAA	-20	NA	130294244	130366493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_130294718_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ES_00050933	chr7	+	3651	13	NIC	ENSMUSG00000040268.18	novel	3777	13	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	137	junction_12	38.4154012806785	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACTCACGTCCCCTTT	NA	False	NA	13	True	AATAAA	-15	NA	130467494	130515032	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
ES_00050939	chr7	+	804	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTCAAATGTCTGATTTG	NA	False	NA	13	True	ATTAAA	-13	NA	130972896	130989559	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ES_00050940	chr7	+	1615	4	FSM	ENSMUSG00000063179.14	ENSMUST00000124672.8	1615	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	16.6799946709291	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAATGTCTGATTTGGAT	NA	False	NA	16	True	ATTAAA	-16	NA	130974763	130989562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_130975993_130985653_130985730_130986228_130986323_130989346
ES_00050946	chr7	+	4015	6	FSM	ENSMUSG00000066979.7	ENSMUST00000209131.2	4015	6	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_4	61.6344059758833	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCAGGTGTGTTACCT	NA	False	NA	8	True	ATTAAA	-17	NA	131162135	131173621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_131162634_131163265_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ES_00050948	chr7	+	3414	6	FSM	ENSMUSG00000066979.7	ENSMUST00000207442.2	3414	6	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_5	59.7146548177246	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTTTTAAAAGTTGGGT	NA	False	NA	16	True	AATAAA	-11	NA	131162438	131172893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233
ES_00050954	chr7	+	3737	2	FSM	ENSMUSG00000030965.20	ENSMUST00000138436.2	3583	2	-154	0	-154	0	multi-exon	FALSE	canonical	3	195	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACGATATTTTAGTGTCTG	NA	False	NA	15	True	AATAAA	-17	NA	132480949	132486839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_132482611_132484763
ES_00050955	chr7	+	3251	11	NNC	ENSMUSG00000030967.16	novel	5008	10	NA	NA	-3	470	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_2	39.6359685134601	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTTGGAAACTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	132532867	132586195	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_132533275_132549772_132549938_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
ES_00050958	chr7	+	4401	24	FSM	ENSMUSG00000039990.17	ENSMUST00000128901.9	4380	24	-21	0	-21	0	multi-exon	FALSE	canonical	3	27	junction_6	37.3605535837356	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGGTAGTTCCCACTT	NA	False	NA	6	True	AATAAA	-19	NA	133239400	133273908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
ES_00050968	chr7	+	2589	21	FSM	ENSMUSG00000058325.7	ENSMUST00000211593.2	2589	21	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_11	23.1652217774836	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTTTCTGTTTTGA	NA	False	NA	7	True	NA	NA	NA	134272415	134384915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475
ES_00050970	chr7	+	6808	52	FSM	ENSMUSG00000058325.7	ENSMUST00000084488.5	6807	52	-1	0	-1	0	multi-exon	FALSE	canonical	3	98	junction_42	17.5348283073368	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGGACTCCTGGTGGCT	NA	False	NA	2	True	AATAAA	-9	NA	134272414	134775368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948_134478045_134592250_134592353_134600952_134601048_134678863_134678943_134683546_134683648_134693102_134693162_134700461_134700611_134710163_134710250_134710434_134710592_134715576_134715618_134717018_134717110_134720636_134720757_134734717_134734808_134735587_134735693_134739543_134739686_134739806_134739886_134742035_134742121_134745484_134745572_134747142_134747320_134748168_134748253_134753937_134754076_134760189_134760336_134765006_134765206_134768828_134768983_134770091_134770244_134774175
ES_00050978	chr7	+	3440	10	FSM	ENSMUSG00000031068.9	ENSMUST00000211496.2	3440	10	0	0	0	0	multi-exon	FALSE	canonical	3	3305	junction_4	256.328974581253	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATATAAATTAGAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	137039383	137068694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143
ES_00050980	chr7	+	2081	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448087	138484786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ES_00050982	chr7	+	1956	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	-18	0	-10	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCACTGCAGTCTTTA	NA	False	NA	17	True	AATAAA	-31	NA	138448305	138484783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ES_00050987	chr7	+	3683	3	FSM	ENSMUSG00000060260.14	ENSMUST00000172136.9	2543	3	-326	-814	-321	0	multi-exon	FALSE	canonical	3	21	junction_2	19.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGCTTCTCTCAACTT	NA	False	NA	NA	False	NA	NA	NA	138828076	138847891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_138828560_138834685_138836382_138846387
ES_00050989	chr7	+	2775	16	FSM	ENSMUSG00000025477.15	ENSMUST00000026550.14	2774	16	-1	0	0	0	multi-exon	TRUE	canonical	3	14	junction_15	41.2685513839938	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGCTTATTCTCC	NA	False	NA	19	True	AATAAA	-20	NA	138969024	139159568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158135_139158269
ES_00050994	chr7	+	901	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	120.382058463876	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616440	139620515	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617495_139619238_139619359_139620155
ES_00050995	chr7	+	1757	5	FSM	ENSMUSG00000025470.12	ENSMUST00000210882.2	1757	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	31.3318926973779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616440	139620515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238
ES_00051001	chr7	+	681	4	FSM	ENSMUSG00000025481.13	ENSMUST00000211372.2	688	4	7	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	116.448367194316	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415191	140417879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140415316_140415524_140415665_140416659_140416796_140417598
ES_00051002	chr7	+	758	3	FSM	ENSMUSG00000025481.13	ENSMUST00000026554.11	890	3	132	0	77	0	multi-exon	FALSE	canonical	3	251	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415323	140417879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140415665_140416659_140416796_140417598
ES_00051011	chr7	+	3145	13	FSM	ENSMUSG00000062031.14	ENSMUST00000169736.8	3145	13	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.7505910016854	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	9	True	ATTAAA	-21	NA	140521478	140527571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
ES_00051017	chr7	+	1441	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	-16	0	-16	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	598	False	NA	16	True	ATTAAA	-14	NA	140668042	140670420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ES_00051019	chr7	+	2135	8	FSM	ENSMUSG00000025495.16	ENSMUST00000174706.8	2119	8	-16	0	-1	0	multi-exon	FALSE	canonical	3	293	junction_1	19.06701393528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGCTGCTGGCTCTCT	6809	False	NA	NA	False	AATAAA	-21	NA	140711197	140734236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887
ES_00051021	chr7	+	3752	13	NNC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	0	407	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	88.9414211090023	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCGAGTTATTAATTACTG	6868	False	NA	NA	False	NA	NA	NA	140711256	140737926	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246_140737538_140737758
ES_00051027	chr7	+	5413	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_14	49.6786907872893	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTATGGACTGATGCT	NA	False	NA	81	True	NA	NA	NA	140808702	140842660	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840827_140841028_140841125_140841456_140841688_140841818_140842321
ES_00051029	chr7	+	5433	18	NNC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	49.8347442062644	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCATTGTGTTCTAAT	NA	False	NA	34	True	NA	NA	NA	140808587	140842613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_140808805_140811139_140811256_140812334_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
ES_00051030	chr7	+	5297	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_15	49.6653158513657	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGGACTGATGCTTAG	NA	False	NA	84	True	NA	NA	NA	140808701	140842663	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841200_140841456_140841688_140841818_140842321
ES_00051031	chr7	+	2519	5	FSM	ENSMUSG00000038611.18	ENSMUST00000142572.8	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	95.4865828271177	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGGACTGATGCTTAG	3522	False	NA	84	True	NA	NA	NA	140839102	140842663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140840621_140840827_140841028_140841125_140841456_140841688_140841818_140842321
ES_00051036	chr7	+	3341	20	FSM	ENSMUSG00000025504.15	ENSMUST00000140025.8	3341	20	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	10.3329610036278	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	7	True	AATAAA	-19	NA	140918868	140942933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
ES_00051041	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2597	False	NA	27	True	AATAAA	-20	NA	141027762	141031263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
ES_00051048	chr7	+	1639	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	-20	0	-20	0	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	690	False	NA	7	True	NA	NA	NA	141048714	141051385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ES_00051051	chr7	+	1660	7	FSM	ENSMUSG00000025511.16	ENSMUST00000239217.2	1157	7	-35	-468	-35	0	multi-exon	FALSE	canonical	3	206	junction_2	25.1241362482817	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	619	False	NA	39	True	NA	NA	NA	141061941	141073334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ES_00051054	chr7	+	4611	22	NNC	ENSMUSG00000002957.12	novel	4646	22	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_7	117.945873284924	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTGTGTGGTTTTTGTG	9633	False	NA	27	True	AATAAA	-21	NA	141142122	141212923	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191245_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
ES_00051056	chr7	+	726	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	-34	0	-34	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086714	142094484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ES_00051061	chr7	+	1607	6	FSM	ENSMUSG00000037706.18	ENSMUST00000208278.2	1607	6	0	0	0	0	multi-exon	FALSE	canonical	3	5787	junction_2	310.280518241155	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGCATGCTAATGGGAC	NA	False	NA	24	True	AATAAA	-12	NA	142618410	142621653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
ES_00051065	chr7	+	1747	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	-12	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623077	142624824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_142623100_142624800
ES_00051066	chr7	+	1364	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	18	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_142623251_142623491_142623558_142623672
ES_00051069	chr7	+	2815	9	FSM	ENSMUSG00000058454.16	ENSMUST00000073878.12	2815	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	137.774045088326	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGTTGTACTGTCTCC	NA	False	NA	31	True	NA	NA	NA	143376903	143402146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_143377278_143383875_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ES_00051074	chr7	+	2018	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	-3	0	-3	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	8	True	AATAAA	-18	NA	144468868	144474871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
ES_00051075	chr7	-	3385	3	FSM	ENSMUSG00000055452.7	ENSMUST00000069044.7	2866	3	0	-519	0	519	multi-exon	FALSE	non_canonical	3	133	junction_2	19.5	780	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGGACCTGTGGCAGGG	7184	False	NA	NA	False	NA	NA	NA	3161963	3158500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3160168_3160215_3161875_3161904
ES_00051076	chr7	-	3342	12	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	141	junction_11	34.6786904344431	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9610	False	NA	87	True	NA	NA	NA	3218925	3204497	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
ES_00051077	chr7	-	3449	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9506	False	NA	87	True	NA	NA	NA	3219029	3204497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
ES_00051079	chr7	-	3088	2	Fusion	ENSMUSG00000078817.5_ENSMUSG00000106340.3	novel	6928	10	NA	NA	-2320	790	multi-exon	FALSE	canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAAGTCTCTGAGAGGCG	NA	False	NA	NA	False	NA	NA	NA	3269689	3266521	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_3268642_3268721
ES_00051080	chr7	-	438	1	FSM	ENSMUSG00000107413.2	ENSMUST00000204205.2	844	1	487	-81	487	81	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTATTCTTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	3314133	3313695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3313700_3314100
ES_00051081	chr7	-	1065	2	FSM	ENSMUSG00000107585.2	ENSMUST00000204020.2	1092	2	27	0	27	0	multi-exon	FALSE	canonical	0	0	junction_1	0	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTCTTCCCAGCTCTCA	NA	False	NA	NA	False	AATAAA	-15	NA	3471934	3470180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3471101_3471789
ES_00051082	chr7	-	892	5	FSM	ENSMUSG00000053338.10	ENSMUST00000065703.9	892	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	20.4374044340273	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCCTTTTTACGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	3551034	3537586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3537738_3544441_3544508_3545190_3545488_3545940_3546232_3550947
ES_00051083	chr7	-	511	1	FSM	ENSMUSG00000107480.2	ENSMUST00000203093.2	1469	1	984	-26	984	26	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTTGTGGTCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	3538611	3538100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3538100_3538600
ES_00051084	chr7	-	1093	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	0	-2	0	2	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTAGGTCACCGTTTA	NA	False	NA	1	True	AATAAA	-18	NA	3632883	3623320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ES_00051085	chr7	-	1168	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	0	-2	0	2	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTAGGTCACCGTTTA	NA	False	NA	1	True	AATAAA	-18	NA	3632928	3623320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ES_00051086	chr7	-	1406	5	FSM	ENSMUSG00000006335.17	ENSMUST00000206370.2	722	5	-197	-487	-127	-152	multi-exon	FALSE	canonical	3	25	junction_3	106.970498269383	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCTTTTCAGATTAAGGT	NA	False	NA	NA	False	NA	NA	NA	3633055	3623485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3623983_3624061_3624132_3627597_3627669_3631822_3632086_3632550
ES_00051088	chr7	-	2240	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	0	-18	0	18	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACATGTTATTAACTCAT	8703	False	NA	-1	True	NA	NA	NA	3668839	3663078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
ES_00051089	chr7	-	2144	9	NNC	ENSMUSG00000035596.15	novel	2878	8	NA	NA	-3	15833	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.8053817482167	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGCCCTACCTATCAT	8151	False	NA	NA	False	NA	NA	NA	3695764	3664954	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_3664979_3680787_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ES_00051090	chr7	-	2310	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCGTTTTGAAACCCCG	5398	False	NA	-12	True	AATAAA	-16	NA	3680552	3668788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
ES_00051091	chr7	-	1529	6	FSM	ENSMUSG00000019734.17	ENSMUST00000136678.3	1529	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	11.8253963992756	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGGAACTTCCTGATA	4061	False	NA	NA	False	AATAAA	-37	NA	3673481	3668956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670624_3672572_3672671_3672913
ES_00051093	chr7	-	2878	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7393	False	NA	-2	True	AATAAA	-15	NA	3696522	3680787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ES_00051095	chr7	-	305	1	FSM	ENSMUSG00000083344.3	ENSMUST00000119883.3	399	1	-8	102	-8	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGACCTCCCGAAAACA	6528	False	NA	NA	False	NA	NA	NA	3987192	3986887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3986900_3987200
ES_00051096	chr7	-	2993	1	FSM	ENSMUSG00000043432.8	ENSMUST00000058358.8	2460	1	-533	0	-533	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATGACGTGAGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	4153906	4150913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4150900_4153900
ES_00051097	chr7	-	939	3	FSM	ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	83	3	83	-3	multi-exon	FALSE	canonical	3	137	junction_2	5.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACTGTCTATTCACTTTA	NA	False	NA	-2	True	CATAAA	-19	NA	4167776	4154261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4154787_4167091_4167187_4167457
ES_00051098	chr7	-	5370	2	Intergenic	novelGene_3579	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATGGCCGAATAGTGGG	NA	False	NA	NA	False	NA	NA	NA	4314259	4308852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_4314115_4314151
ES_00051099	chr7	-	3038	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	0	-4	0	4	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCATTGTCCTTTTGTT	NA	False	NA	2	True	AATAAA	-26	NA	4448648	4428661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
ES_00051100	chr7	-	2671	22	FSM	ENSMUSG00000019254.17	ENSMUST00000124248.8	2667	22	0	-4	0	4	multi-exon	FALSE	canonical	3	46	junction_7	53.3921869151542	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCCTGATTGTGGG	8480	False	NA	1	True	AATAAA	-21	NA	4504360	4484514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486188_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
ES_00051101	chr7	-	2987	22	FSM	ENSMUSG00000019254.17	ENSMUST00000013886.9	2983	22	0	-4	0	4	multi-exon	FALSE	canonical	3	198	junction_16	25.6093980765123	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCCTGATTGTGGG	9941	False	NA	1	True	AATAAA	-21	NA	4504679	4484514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486185_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
ES_00051103	chr7	-	1246	4	FSM	ENSMUSG00000019254.17	ENSMUST00000145689.7	1370	4	0	124	0	-124	multi-exon	FALSE	canonical	3	253	junction_2	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGCAAAGAAAGCAAATG	9957	False	NA	NA	False	NA	NA	NA	4504663	4492294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4492892_4500215_4500335_4500414_4500546_4504264
ES_00051104	chr7	-	958	8	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	3877	-186	-553	1	3prime_fragment	TRUE	canonical	2	3	junction_7	16.608333290667	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGGAGTACAACTTGT	9332	False	NA	83	True	ATTAAA	-16	NA	4513490	4507567	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315
ES_00051105	chr7	-	485	4	FSM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	18.0800688297608	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGTCGAGTTGGAGGCC	7330	False	NA	NA	False	GGGGCT	-3	NA	4511024	4507784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4510686
ES_00051106	chr7	-	916	8	FSM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	0	-4	0	4	multi-exon	FALSE	canonical	3	16	junction_6	4.77664385637157	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTCTGCTAACCTGG	6917	False	NA	2	True	AATAAA	-21	NA	4525527	4521299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303
ES_00051107	chr7	-	3602	19	Fusion	ENSMUSG00000055809.8_ENSMUSG00000035458.16	novel	2224	12	NA	NA	11	4	intron_retention	FALSE	canonical	1	1	junction_16	7.6594168620507	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTCTGCTAACCTGG	NA	False	NA	2	True	AATAAA	-21	NA	4535441	4521299	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533936_4534736_4534880_4535185_4535275_4535376
ES_00051108	chr7	-	3787	25	NNC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	67.2624936763093	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTGGGACTGTGA	NA	False	NA	-3	True	AATAAA	-17	NA	4661989	4634493	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_4634896_4634941_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
ES_00051109	chr7	-	3799	25	NNC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	67.2624936763093	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTGGGACTGTGA	NA	False	NA	-3	True	AATAAA	-17	NA	4661989	4634493	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_4634896_4634929_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
ES_00051110	chr7	-	3862	24	FSM	ENSMUSG00000052296.8	ENSMUST00000064099.8	3862	24	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_23	30.5598053220771	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTGGGACTGTGA	NA	False	NA	-3	True	AATAAA	-17	NA	4662018	4634493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
ES_00051112	chr7	-	1502	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	7	6	combination_of_known_junctions	FALSE	canonical	3	210	junction_7	116.504882966775	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	4687973	4663513	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
ES_00051113	chr7	-	1414	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	11	6	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	4687969	4663513	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
ES_00051114	chr7	-	1599	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	0	-6	0	6	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	-1	True	AATAAA	-22	NA	4688067	4663513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ES_00051115	chr7	-	245	3	Intergenic	novelGene_3580	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCACTTTTAAGAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	4729826	4721529	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_4721714_4728937_4728961_4729788
ES_00051117	chr7	-	433	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182738.8	423	4	0	-10	0	8	multi-exon	FALSE	canonical	3	34	junction_1	362.510076488303	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTCGTTTTGTTTCC	NA	False	NA	-1	True	AATAAA	-25	NA	4756008	4754782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4754975_4755102_4755161_4755722_4755849_4755951
ES_00051118	chr7	-	443	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	-8	0	8	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTCGTTTTGTTTCC	NA	False	NA	-1	True	AATAAA	-25	NA	4756022	4754782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
ES_00051119	chr7	-	593	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	0	-8	0	8	multi-exon	FALSE	canonical	3	648	junction_1	77.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTCGTTTTGTTTCC	NA	False	NA	-1	True	AATAAA	-25	NA	4756022	4754782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4754975_4755059_4755161_4755722
ES_00051120	chr7	-	494	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183334.8	490	4	0	-4	0	1	multi-exon	FALSE	canonical	3	20	junction_2	338.542299999408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTCTTTTCTCGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	4756022	4754789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4754975_4755059_4755172_4755722_4755849_4755951
ES_00051121	chr7	-	548	4	FSM	ENSMUSG00000051811.15	ENSMUST00000063324.14	553	4	13	-8	13	8	multi-exon	FALSE	canonical	3	648	junction_1	73.0677007226099	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTCGTTTTGTTTCC	NA	False	NA	-1	True	AATAAA	-25	NA	4756080	4754782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4754975_4755059_4755161_4755722_4755849_4755951
ES_00051122	chr7	-	465	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182048.2	465	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	332.524017511852	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGGTCACCCCCTCCCT	NA	False	NA	-72	True	NA	NA	NA	4756037	4754853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4754975_4755059_4755161_4755722_4755880_4755951
ES_00051124	chr7	-	1281	2	FSM	ENSMUSG00000030431.9	ENSMUST00000168578.3	1375	2	-15	109	-15	-109	multi-exon	FALSE	canonical	3	322	junction_1	0	812	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATGGCTTAGGACACGTT	147	False	NA	NA	False	NA	NA	NA	4792670	4787664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4788279_4792003
ES_00051125	chr7	-	1238	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	0	0	0	0	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCCTGAAGTGTC	NA	False	NA	-25	True	AATAAA	-15	NA	4815589	4811012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
ES_00051126	chr7	-	517	4	FSM	ENSMUSG00000060860.9	ENSMUST00000205885.2	518	4	1	0	1	0	multi-exon	FALSE	canonical	3	34	junction_3	4812.94956918889	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTTTTGGAGAATTATGA	NA	False	NA	NA	False	NA	NA	NA	4815122	4811420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815007
ES_00051127	chr7	-	5213	5	FSM	ENSMUSG00000053550.14	ENSMUST00000117452.8	5211	5	0	-2	0	2	multi-exon	FALSE	canonical	3	9	junction_4	3.08220700148449	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCCTCAAGGTTTTCTT	5830	False	NA	NA	False	AATAAA	-18	NA	4839173	4828548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4833275_4833757_4833908_4834671_4834723_4837228_4837384_4839042
ES_00051128	chr7	-	621	3	FSM	ENSMUSG00000052605.13	ENSMUST00000207699.2	636	3	19	-4	19	1	multi-exon	FALSE	canonical	3	4	junction_2	1.5	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCGAACCATTATTGGGTT	NA	False	NA	NA	False	AATAAA	-17	NA	4853848	4847956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4848365_4852448_4852567_4853753
ES_00051129	chr7	-	1081	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_5	2.13541565040626	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCGAACCATTATTGGGTT	NA	False	NA	NA	False	AATAAA	-17	NA	4869192	4847956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
ES_00051130	chr7	-	2549	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	0	-3	0	3	multi-exon	FALSE	canonical	3	184	junction_2	130	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGTTTTTTGATCCT	2832	False	NA	-1	True	AATAAA	-17	NA	5017677	5010054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_5012205_5015676_5016022_5017623
ES_00051131	chr7	-	2524	4	NNC	ENSMUSG00000061374.15	novel	2653	3	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	3	184	junction_3	116.333810887272	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGTTTTTTGATCCT	2813	False	NA	-1	True	AATAAA	-17	NA	5017696	5010054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_5010950_5010993_5012205_5015676_5016022_5017623
ES_00051132	chr7	-	2690	3	FSM	ENSMUSG00000061374.15	ENSMUST00000165320.3	2653	3	-34	-3	-34	3	multi-exon	FALSE	canonical	2	9	junction_2	217.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGTTTTTTGATCCT	2779	False	NA	-1	True	AATAAA	-17	NA	5017730	5010054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_5012205_5015676_5016022_5017535
ES_00051134	chr7	-	1902	3	FSM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	0	-5	0	5	multi-exon	FALSE	canonical	3	46	junction_1	59	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGTTTCTTGAGTTTG	9626	False	NA	4	True	AATAAA	-25	NA	6158970	6134484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6136171_6146060_6146150_6158843
ES_00051135	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9600	False	NA	-10	True	AATAAA	-16	NA	6158996	6145284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6145619_6146060_6146150_6158843
ES_00051136	chr7	-	560	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	9	-5	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	65.7723346096214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCACCTCCACCTGTA	9635	False	NA	-82	True	NA	NA	NA	6158961	6145356	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_6145619_6145705_6145797_6146060_6146150_6158843
ES_00051137	chr7	-	2547	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	0	3	0	-3	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGTTGATTATTTTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	6334284	6318661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
ES_00051139	chr7	-	8695	9	FSM	ENSMUSG00000002265.18	ENSMUST00000051209.11	8694	9	0	-1	0	1	multi-exon	FALSE	canonical	3	81	junction_3	8.98262211161084	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCAGTCTCTTCCTTTGTC	NA	False	NA	NA	False	AATAAA	-24	NA	6733420	6706889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6714731_6714849_6714943_6715671_6715775_6719052_6719157_6720111_6720196_6720797_6720888_6721424_6721556_6729488_6729574_6733256
ES_00051140	chr7	-	2967	2	FSM	ENSMUSG00000002265.18	ENSMUST00000155910.3	4816	2	0	1849	0	-1849	multi-exon	FALSE	canonical	3	104	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGTAGAATGAGTTAGCG	NA	False	NA	NA	False	TTTAAA	-30	NA	6733430	6726780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6729574_6733256
ES_00051141	chr7	-	556	3	FSM	ENSMUSG00000108043.3	ENSMUST00000203351.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTAGTTCTGCATA	NA	False	NA	NA	False	AATAAA	-17	NA	6980419	6979300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6979470_6979559_6979747_6980219
ES_00051142	chr7	-	441	1	FSM	ENSMUSG00000109488.2	ENSMUST00000207902.2	1186	1	153	592	153	-592	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAGGATATGCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	7100874	7100433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7100400_7100900
ES_00051143	chr7	-	2048	5	FSM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	0	-6	0	6	multi-exon	FALSE	canonical	3	51	junction_3	2.54950975679639	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTCTTGAGGTTTTCTG	6236	False	NA	1	True	AATAAA	-27	NA	7124487	7117682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221
ES_00051145	chr7	-	2780	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	-3	0	3	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGACTATTGTGTCACT	NA	False	NA	NA	False	AATAAA	-21	NA	7212997	7205112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
ES_00051146	chr7	-	4224	12	ISM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	787	0	0	0	3prime_fragment	FALSE	canonical	2	21	junction_11	8.98943365042381	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTGGTGTCTTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	7301745	7285307	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
ES_00051147	chr7	-	2045	1	FSM	ENSMUSG00000109654.2	ENSMUST00000173575.3	2308	1	248	15	248	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	1019	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTGTCTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	7371554	7369509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7369500_7371600
ES_00051148	chr7	-	1158	5	FSM	ENSMUSG00000092574.5	ENSMUST00000210322.2	1179	5	21	0	21	0	multi-exon	FALSE	canonical	3	23	junction_4	6.74536878161602	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATAGGGAGTGACACTAT	NA	False	NA	NA	False	NA	NA	NA	8096019	8089324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095759
ES_00051149	chr7	-	510	4	FSM	ENSMUSG00000092624.3	ENSMUST00000210597.2	472	4	-43	5	-43	-5	multi-exon	FALSE	canonical	2	3	junction_1	2.49443825784929	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCTGCGTTGAGATTC	NA	False	NA	NA	False	NA	NA	NA	8292146	8286901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_8286959_8288132_8288259_8289403_8289442_8291857
ES_00051150	chr7	-	2364	5	NNC	ENSMUSG00000092490.8	novel	825	5	NA	NA	2373	1097	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	13.8631706330118	310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCACTTGTTTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	8863278	8857748	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_8859771_8860940_8861028_8861801_8861928_8863073_8863113_8863188
ES_00051151	chr7	-	4206	4	FSM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	0	-7	0	7	multi-exon	TRUE	canonical	3	55	junction_1	5.43650214343336	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTAAGACTTCATTTAT	NA	False	NA	1	True	NA	NA	NA	10229321	10221148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_10224936_10226205_10226333_10228416_10228456_10229068
ES_00051152	chr7	-	342	1	FSM	ENSMUSG00000093826.2	ENSMUST00000178971.2	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGTGGCTCTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	10390747	10390405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_10390400_10390700
ES_00051153	chr7	-	2279	4	FSM	ENSMUSG00000110097.2	ENSMUST00000210573.2	2279	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	3.29983164553722	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGTAGTTTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	10532984	10528168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_10529709_10529792_10529953_10531798_10532271_10532877
ES_00051154	chr7	-	1754	4	FSM	ENSMUSG00000095339.3	ENSMUST00000168158.3	1754	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTAATTAGGT	NA	False	NA	NA	False	NA	NA	NA	10638977	10634666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_10635707_10635790_10635951_10637767_10638240_10638895
ES_00051156	chr7	-	772	1	FSM	ENSMUSG00000066807.3	ENSMUST00000086233.3	688	1	-63	-21	-63	21	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTACAAATACACTGTTGT	NA	False	NA	NA	False	NA	NA	NA	11820602	11819830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_11819800_11820600
ES_00051157	chr7	-	2435	4	FSM	ENSMUSG00000034071.16	ENSMUST00000080348.12	2591	4	131	25	-31	-25	multi-exon	FALSE	canonical	2	3	junction_1	2.86744175568088	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTAATAAAACTTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	12156547	12149104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12151146_12152469_12152594_12155734_12155774_12156316
ES_00051160	chr7	-	1992	4	FSM	ENSMUSG00000070822.6	ENSMUST00000209869.2	552	4	56	-1496	56	-4	multi-exon	FALSE	canonical	3	26	junction_3	10.7806410858642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATATTATGCCTCATTGT	NA	False	NA	-5	True	AATAAA	-16	NA	12506108	12502022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935
ES_00051161	chr7	-	3705	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	0	4	0	-4	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATATTATGCCTCATTGT	NA	False	NA	-5	True	AATAAA	-16	NA	12514581	12502022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
ES_00051162	chr7	-	629	3	FSM	ENSMUSG00000070822.6	ENSMUST00000210891.2	629	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACAGCTGAGCTGAAGGT	NA	False	NA	NA	False	AGTAAA	-13	NA	12508266	12505953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12506043_12507367_12507518_12507876
ES_00051163	chr7	-	825	1	FSM	ENSMUSG00000110124.2	ENSMUST00000211441.2	1042	1	-115	332	-115	-332	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACACACCAGCTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	12528911	12528086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12528100_12528900
ES_00051164	chr7	-	2392	1	FSM	ENSMUSG00000109724.2	ENSMUST00000210952.2	3442	1	164	886	164	219	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGAGACATTATATCTCT	NA	False	NA	NA	False	AATATA	-3	NA	12532927	12530535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12530500_12532900
ES_00051165	chr7	-	6727	2	FSM	ENSMUSG00000057894.11	ENSMUST00000072222.8	6727	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGATTTTTTAAAAATTG	NA	False	NA	-12	True	NA	NA	NA	12552785	12538908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12545594_12552743
ES_00051166	chr7	-	684	2	FSM	ENSMUSG00000057894.11	ENSMUST00000129647.2	684	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCAAGTAAATAAGTT	NA	False	NA	NA	False	AATGAA	-34	NA	12542002	12539999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12540520_12541838
ES_00051167	chr7	-	2095	4	NNC	ENSMUSG00000049600.9	novel	3908	3	NA	NA	0	41993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.2163740558414	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTCTCAGGCTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	12743727	12695831	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_12695873_12739594_12740308_12740950_12742257_12743692
ES_00051168	chr7	-	3908	3	FSM	ENSMUSG00000049600.9	ENSMUST00000210282.2	3908	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	93	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCTGCTTGGGCCA	NA	False	NA	NA	False	NA	NA	NA	12743727	12737824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12740308_12740950_12742257_12743608
ES_00051169	chr7	-	2171	3	FSM	ENSMUSG00000049600.9	ENSMUST00000051390.9	2171	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	65	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGATTTTAGGATTCCAA	NA	False	NA	-45	True	NA	NA	NA	12743757	12739637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12740308_12740950_12742257_12743562
ES_00051170	chr7	-	930	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCTGTGAGCTTATGA	7091	False	NA	-7	True	AATAAA	-21	NA	12768578	12765936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
ES_00051171	chr7	-	888	5	FSM	ENSMUSG00000033916.6	ENSMUST00000209487.2	888	5	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_4	222.956273739942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7072	False	NA	-11	True	AATAAA	-17	NA	12768597	12765940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12766130_12766215_12766278_12766361_12766749_12767755_12767970_12768561
ES_00051172	chr7	-	949	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6935	False	NA	-11	True	AATAAA	-17	NA	12768734	12765940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
ES_00051173	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	1108.87882115225	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	7003	False	NA	-16	True	AATAAA	-12	NA	12768666	12765945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
ES_00051174	chr7	-	1338	4	FSM	ENSMUSG00000005575.17	ENSMUST00000138357.9	1338	4	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_3	201.644902406847	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8970	False	NA	-3	True	ATTAAA	-17	NA	12771673	12769164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12770243_12770360_12770400_12770492_12770588_12771547
ES_00051175	chr7	-	1472	6	FSM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_5	193.215320303541	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8443	False	NA	-3	True	ATTAAA	-17	NA	12772200	12769164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547
ES_00051176	chr7	-	801	6	FSM	ENSMUSG00000005575.17	ENSMUST00000125964.8	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	904.553503116317	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCAATGGGCCTGGGTC	9089	False	NA	-94	True	NA	NA	NA	12771554	12769255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771481
ES_00051177	chr7	-	544	4	FSM	ENSMUSG00000005575.17	ENSMUST00000123541.2	544	4	0	0	0	0	multi-exon	FALSE	canonical	3	2289	junction_3	62.845489540265	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTACCGGCCCAGGCATCC	5094	False	NA	NA	False	NA	NA	NA	12770575	12769514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12769833_12770138_12770243_12770360_12770400_12770492
ES_00051180	chr7	-	3987	3	FSM	ENSMUSG00000070814.18	ENSMUST00000119139.10	3985	3	0	-2	0	2	multi-exon	FALSE	canonical	3	9	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTGAGTTCGTGGCT	2221	False	NA	-3	True	AATAAA	-17	NA	13012070	12992891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12995567_13003260_13003574_13011071
ES_00051182	chr7	-	606	1	FSM	ENSMUSG00000074547.5	ENSMUST00000092523.3	612	1	73	-67	73	67	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAACAAAGAG	NA	False	NA	NA	False	NA	NA	NA	13067109	13066503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_13066500_13067100
ES_00051183	chr7	-	902	1	FSM	ENSMUSG00000098404.2	ENSMUST00000184613.2	940	1	-4	42	-4	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCAGGTAATTGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	15023119	15022217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_15022200_15023100
ES_00051184	chr7	-	1341	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	0	3	0	-3	multi-exon	FALSE	canonical	3	46	junction_1	9.5	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTGCCAGTTTTTACC	NA	False	NA	17	True	AATAAA	-33	NA	15573603	15567168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_15567876_15568304_15568891_15573555
ES_00051185	chr7	-	711	7	NNC	ENSMUSG00000041571.11	novel	736	6	NA	NA	44	56321	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	759.385881266347	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGCAGCACAATTTATCC	NA	False	NA	NA	False	NA	NA	NA	15656283	15594811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_15594836_15651137_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
ES_00051186	chr7	-	725	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	11	0	11	0	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656316	15651132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
ES_00051188	chr7	-	1793	12	FSM	ENSMUSG00000041560.13	ENSMUST00000197477.5	1793	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_11	561.705652160828	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679675	15671762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679442
ES_00051190	chr7	-	4073	16	ISM	ENSMUSG00000006019.16	ENSMUST00000094816.3	4073	17	2818	-85	2818	8	3prime_fragment	FALSE	canonical	3	60	junction_12	12.4347184215093	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTATTTATTTACATT	6725	False	NA	4	True	NA	NA	NA	15953100	15931063	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912
ES_00051191	chr7	-	3801	17	FSM	ENSMUSG00000006019.16	ENSMUST00000163968.8	3801	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	13.8562655051785	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGCCTCCCTCACCCT	8442	False	NA	-1	True	AATAAA	-19	NA	15955957	15931145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912_15952876_15955922
ES_00051192	chr7	-	1638	1	FSM	ENSMUSG00000091811.3	ENSMUST00000169612.3	1605	1	-33	0	-33	0	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCGTTGGTTTCTGCT	NA	False	NA	-7	True	ATTAAA	-19	NA	16007575	16005937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16005900_16007600
ES_00051195	chr7	-	2173	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	4	-2	4	-1	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGAACTGTGCTGCTA	NA	False	NA	-6	True	ATTAAA	-16	NA	16020711	16007967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ES_00051196	chr7	-	1866	11	FSM	ENSMUSG00000041375.20	ENSMUST00000041010.16	2379	11	513	0	513	0	multi-exon	FALSE	canonical	3	130	junction_1	30.5203210992283	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGTGTCCTTGAACC	NA	False	NA	-1	True	AATAAA	-27	NA	16018471	16009388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419
ES_00051197	chr7	-	1939	12	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_1	37.3980155923805	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGTGTCCTTGAACC	NA	False	NA	-1	True	AATAAA	-27	NA	16020694	16009388	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ES_00051202	chr7	-	1254	10	FSM	ENSMUSG00000052833.10	ENSMUST00000210999.2	1254	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	915.179615373431	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGGCCGTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	16121731	16054666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16054806_16061755_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ES_00051203	chr7	-	1875	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ES_00051206	chr7	-	858	1	FSM	ENSMUSG00000108366.2	ENSMUST00000206264.2	795	1	0	-63	0	63	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAGAAAACAAACTATATAT	NA	False	NA	NA	False	AATAAA	-35	NA	16453835	16452977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16453000_16453800
ES_00051207	chr7	-	2829	3	FSM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	3	-5	3	5	multi-exon	FALSE	canonical	3	12	junction_2	10.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTGTTCCACACACTCC	NA	False	NA	NA	False	AATAGA	-27	NA	16550654	16543165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16545902_16548988_16549052_16550624
ES_00051208	chr7	-	413	2	FSM	ENSMUSG00000048920.9	ENSMUST00000205368.2	416	2	3	0	3	0	multi-exon	FALSE	canonical	3	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTGTTGTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	16550654	16548668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16549052_16550624
ES_00051209	chr7	-	2290	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16658039	16649303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ES_00051210	chr7	-	1960	14	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	0	48558	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.94202181142	1411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGGAGGGAGGGAAGGGA	NA	False	NA	NA	False	NA	NA	NA	16761714	16690006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_16690034_16738576_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ES_00051211	chr7	-	1971	14	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	0	48557	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.94202181142	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGGAGGGAGGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	16761714	16690007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_16690034_16738564_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ES_00051212	chr7	-	2077	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	0	-5	0	5	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGACGTGTGTCCACCACG	NA	False	NA	2	True	AATAAA	-42	NA	16761841	16738559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ES_00051215	chr7	-	840	5	FSM	ENSMUSG00000003099.12	ENSMUST00000124573.8	840	5	0	0	0	0	multi-exon	FALSE	canonical	3	1078	junction_1	41.148359627086	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTCGAGTGGCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	16749395	16741077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322
ES_00051217	chr7	-	6392	15	FSM	ENSMUSG00000004328.16	ENSMUST00000108492.9	6402	15	10	0	10	0	multi-exon	TRUE	canonical	0	0	junction_10	3.50218590632322	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCGGTGTTGACTCATC	NA	False	NA	-1	True	CATAAA	-25	NA	16796342	16765431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16769891_16771058_16771141_16773482_16773595_16774893_16775166_16776513_16776616_16778301_16778493_16778779_16778893_16782538_16782687_16782924_16783032_16784473_16784683_16785057_16785171_16785846_16785932_16788606_16788753_16790184_16790376_16796280
ES_00051218	chr7	-	377	1	FSM	ENSMUSG00000108694.2	ENSMUST00000205267.2	602	1	231	-6	231	6	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATATTTGTAAAATTCATA	1701	False	NA	NA	False	AATACA	-3	NA	16873166	16872789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16872800_16873200
ES_00051220	chr7	-	1981	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_7	38.5657050949086	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2789	False	NA	-1	True	AATAAA	-18	NA	18644311	18624807	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ES_00051221	chr7	-	1962	14	FSM	ENSMUSG00000074358.10	ENSMUST00000135467.8	1961	14	0	-1	0	0	multi-exon	FALSE	canonical	3	29	junction_10	61.8715026505473	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2777	False	NA	-1	True	AATAAA	-18	NA	18644323	18624807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633608_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ES_00051222	chr7	-	2021	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	1	0	1	0	multi-exon	FALSE	canonical	3	126	junction_7	27.4902887640592	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2761	False	NA	-1	True	AATAAA	-18	NA	18644339	18624807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ES_00051224	chr7	-	611	5	FSM	ENSMUSG00000074358.10	ENSMUST00000150065.8	611	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	90.2396115904762	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTCTGGGGTGTGTGTG	2777	False	NA	NA	False	NA	NA	NA	18644323	18633482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644267
ES_00051225	chr7	-	2094	2	FSM	ENSMUSG00000040891.7	ENSMUST00000036018.6	2037	2	-57	0	-57	0	multi-exon	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTAGTGTCTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-16	NA	18757520	18747208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18749056_18757273
ES_00051226	chr7	-	2710	7	FSM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	5.82380173655205	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATTAAAAACCAAAAA	7204	False	NA	NA	False	NA	NA	NA	18883216	18873626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
ES_00051227	chr7	-	2221	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	-6	0	6	multi-exon	TRUE	canonical	3	1236	junction_9	117.461666323765	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTACTTTAAATGCTAT	NA	False	NA	NA	False	AATAAA	-30	NA	19005742	18990847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ES_00051228	chr7	-	2213	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	243	junction_7	341.113250988583	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTGGAGTACTTTAAAT	NA	False	NA	NA	False	AATAAA	-25	NA	19005742	18990852	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994604_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ES_00051229	chr7	-	274	2	FSM	ENSMUSG00000030403.10	ENSMUST00000162717.2	274	2	0	0	0	0	multi-exon	FALSE	canonical	3	1238	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGCCCCCAAAGCTGA	9248	False	NA	NA	False	NA	NA	NA	18995001	18994585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18994607_18994748
ES_00051230	chr7	-	767	6	FSM	ENSMUSG00000030403.10	ENSMUST00000206229.2	844	6	77	0	77	0	multi-exon	FALSE	canonical	2	10	junction_5	531.795599831364	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCATTGCTGGAGCCAAA	3855	False	NA	NA	False	NA	NA	NA	19000394	18994786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19000292
ES_00051231	chr7	-	1648	5	FSM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	5.35607132140714	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	9555	False	NA	1	True	AATAAA	-17	NA	19013989	19010729	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19013031
ES_00051232	chr7	-	1858	5	NNC	ENSMUSG00000030402.6	novel	1648	5	NA	NA	-250	0	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_1	5.35607132140714	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAAATTTTACTTAATAA	9305	False	NA	-36	True	NA	NA	NA	19014239	19010766	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19011132_19011874_19011936_19012009_19012116_19012194_19012313_19013031
ES_00051233	chr7	-	454	3	NNC	ENSMUSG00000047649.10	novel	489	2	NA	NA	3	2699	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTTCACAGGCCTTCTGA	2161	False	NA	NA	False	NA	NA	NA	19093403	19087239	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19087461_19093014_19093157_19093312
ES_00051234	chr7	-	2207	4	NNC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	10	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.490987293304	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTGATACATGGGGTCA	2168	False	NA	-6	True	NA	NA	NA	19093396	19089925	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19090089_19090123_19091942_19093014_19093157_19093312
ES_00051235	chr7	-	2252	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	0	-13	0	13	multi-exon	FALSE	canonical	3	228	junction_1	10	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTGATACATGGGGTCA	2158	False	NA	-6	True	NA	NA	NA	19093406	19089925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19091942_19093014_19093157_19093312
ES_00051237	chr7	-	1829	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108459.9	1849	13	23	-3	-20	0	multi-exon	FALSE	canonical	3	11	junction_12	5.52959210872636	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	6355	False	NA	NA	False	NA	NA	NA	19133823	19128361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133733
ES_00051238	chr7	-	1832	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108458.10	1823	13	0	-9	0	9	multi-exon	TRUE	canonical	2	9	junction_12	5.99247212944893	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTCAATTCGCTGTAGT	2149	False	NA	NA	False	NA	NA	NA	19138029	19128352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
ES_00051239	chr7	-	1886	12	NIC	ENSMUSG00000040714.15	novel	1823	13	NA	NA	21	-1	intron_retention	FALSE	canonical	2	9	junction_11	6.24962808810808	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGCGATCTGCTCAAT	2170	False	NA	NA	False	NA	NA	NA	19138008	19128362	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
ES_00051241	chr7	-	3966	18	FSM	ENSMUSG00000030397.12	ENSMUST00000239292.2	3966	18	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	31.7309188501163	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTCCGTTTGTCCTTTC	NA	False	NA	NA	False	AATGAA	-14	NA	19192746	19158699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19160337_19161998_19162044_19163030_19163111_19163250_19163530_19165693_19165798_19167243_19167462_19168481_19168642_19168736_19168847_19170862_19170963_19171323_19171444_19177041_19177279_19179033_19179091_19181105_19181177_19181606_19181673_19182350_19182400_19182529_19182584_19185480_19185682_19192368
ES_00051243	chr7	-	1802	4	FSM	ENSMUSG00000051403.10	ENSMUST00000209190.2	1792	4	0	-10	0	10	multi-exon	FALSE	canonical	3	93	junction_3	23.3666428910958	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCCTGCTGGGCGGGTG	5826	False	NA	4	True	AATAAA	-25	NA	19266907	19264714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571
ES_00051244	chr7	-	3816	13	FSM	ENSMUSG00000051403.10	ENSMUST00000058444.10	3816	13	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	17.5752351019521	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCCTCTGTTTCCTGC	7514	False	NA	-6	True	AATAAA	-15	NA	19297001	19264724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571_19266739_19266842_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ES_00051245	chr7	-	958	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-20	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.5	255	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2882	False	NA	NA	False	AAGAAA	-17	NA	19307330	19298688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19298798_19298849_19299602_19307233
ES_00051247	chr7	-	763	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTGCTGTGTGTGTGT	2944	False	NA	-9	True	AATAAA	-19	NA	19307268	19298873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19299602_19307233
ES_00051249	chr7	-	2431	20	FSM	ENSMUSG00000061028.8	ENSMUST00000207907.2	2431	20	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_19	60.3945476433225	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338330	19314967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338249
ES_00051250	chr7	-	2173	21	NNC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	74.5207856909735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338384	19314967	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19315084_19315305_19315331_19316156_19316262_19318077_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ES_00051251	chr7	-	4542	20	FSM	ENSMUSG00000061028.8	ENSMUST00000208464.2	4545	20	0	3	0	0	multi-exon	TRUE	canonical	3	161	junction_6	33.2616588602929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACATGCTGTCCCCTT	NA	False	NA	-7	True	AATAAA	-23	NA	19338384	19314965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ES_00051252	chr7	-	2151	21	FSM	ENSMUSG00000061028.8	ENSMUST00000208068.2	2151	21	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	53.6276747584678	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338386	19314967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ES_00051253	chr7	-	2172	21	FSM	ENSMUSG00000061028.8	ENSMUST00000086041.7	2180	21	0	8	0	0	multi-exon	FALSE	canonical	3	161	junction_6	32.5501152071694	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338411	19314967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ES_00051257	chr7	-	289	1	Intergenic	novelGene_3623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTAAAAGAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	19338906	19338617	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_19338600_19338900
ES_00051258	chr7	-	2298	11	NNC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	71.0836830784675	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19362331	19340141	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361911_19362000
ES_00051259	chr7	-	2359	12	NIC	ENSMUSG00000002983.18	novel	2209	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	91.1853982801201	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19362398	19340141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19362000
ES_00051260	chr7	-	2311	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_10	54.7927002437368	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19362359	19340141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362000
ES_00051261	chr7	-	2200	11	FSM	ENSMUSG00000002983.18	ENSMUST00000049912.15	2200	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_10	60.3088716525189	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19363363	19340141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19363115
ES_00051262	chr7	-	2279	12	FSM	ENSMUSG00000002983.18	ENSMUST00000094762.10	2209	12	-70	0	-70	0	multi-exon	FALSE	canonical	0	0	junction_10	93.6601911430821	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19363433	19340141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19363115
ES_00051265	chr7	-	533	3	FSM	ENSMUSG00000074336.6	ENSMUST00000003071.10	538	3	0	5	0	-5	multi-exon	FALSE	canonical	3	21	junction_2	3.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCGGACGCATAGCTTCT	5934	False	NA	-2	True	AATAAA	-22	NA	19415404	19412012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19412238_19412534_19412668_19415229
ES_00051266	chr7	-	540	3	FSM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	0	-8	0	8	multi-exon	FALSE	canonical	3	1274	junction_1	0.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTGGACTGGGGT	NA	False	NA	4	True	AATAAA	-27	NA	19426563	19423397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19423562_19425812_19425961_19426335
ES_00051267	chr7	-	440	4	FSM	ENSMUSG00000040564.15	ENSMUST00000045035.12	432	4	0	-8	0	8	multi-exon	FALSE	canonical	3	965	junction_3	145.90027035235	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTGGACTGGGGT	NA	False	NA	4	True	AATAAA	-27	NA	19426585	19423397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19423562_19425812_19425961_19426335_19426412_19426533
ES_00051268	chr7	-	1385	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	0	23	0	-23	multi-exon	FALSE	canonical	3	8700	junction_3	835.854984764436	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAGCAACATAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	19433113	19430056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432935
ES_00051269	chr7	-	817	5	FSM	ENSMUSG00000002985.17	ENSMUST00000172983.8	817	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	5193.26072906031	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGGCCCGTGACCGCCT	NA	False	NA	NA	False	NA	NA	NA	19432963	19430544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
ES_00051270	chr7	-	897	1	FSM	ENSMUSG00000002985.17	ENSMUST00000207525.2	897	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGAGCAAGGTCGCCAGC	NA	False	NA	NA	False	NA	NA	NA	19431556	19430659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19430700_19431600
ES_00051273	chr7	-	1662	9	FSM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	0	-16	0	0	multi-exon	TRUE	canonical	3	2643	junction_3	135.037899772619	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGGCCTCGGTTTTC	9894	False	NA	-13	True	NA	NA	NA	19449350	19435237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905
ES_00051274	chr7	-	1577	10	FSM	ENSMUSG00000002984.18	ENSMUST00000093552.12	1577	10	0	0	0	0	multi-exon	FALSE	canonical	3	2342	junction_9	200.868177398407	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGGCCTCGGTTTTC	9881	False	NA	-13	True	NA	NA	NA	19449363	19435237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905_19449185_19449282
ES_00051277	chr7	-	2730	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	7	-2	7	2	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGAAGTGAGTGGGGTAC	NA	False	NA	0	True	GATAAA	-20	NA	19483491	19450566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ES_00051278	chr7	-	1955	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ES_00051279	chr7	-	2433	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	0	-4	0	4	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCAGGTTCTCTTCTCAGG	3912	False	NA	-1	True	AATAAA	-30	NA	19504472	19490051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ES_00051281	chr7	-	1669	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	0	-7	0	7	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTGACAGAGACCAACA	NA	False	NA	8	True	AATAAA	-27	NA	19530734	19513635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
ES_00051283	chr7	-	2131	9	FSM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	0	-281	0	281	multi-exon	TRUE	canonical	3	615	junction_1	42.6314144733669	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	5729	False	NA	NA	False	TTTAAA	-23	NA	19556695	19542105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
ES_00051285	chr7	-	664	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	0	-19	0	19	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATGAACATAGTGGAGCA	NA	False	NA	NA	False	AATAAA	-32	NA	23646715	23646051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_23646100_23646700
ES_00051288	chr7	-	2360	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	114	6	76	-6	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTATCATGTGGATTCTT	NA	False	NA	1	True	TATAAA	-17	NA	23998986	23990469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ES_00051289	chr7	-	2867	5	FSM	ENSMUSG00000074282.11	ENSMUST00000032673.15	2529	5	84	-422	0	330	multi-exon	FALSE	canonical	2	9	junction_1	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCAAAAGAATTAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	24016007	24000798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24003299_24008495_24008623_24011806_24011921_24013774_24013837_24015943
ES_00051290	chr7	-	2599	6	FSM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.8262252939418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAGACAGTCACTTGA	NA	False	NA	NA	False	AGTAAA	-16	NA	24016030	24001128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015943
ES_00051292	chr7	-	2663	4	FSM	ENSMUSG00000066721.4	ENSMUST00000094705.3	2741	4	0	78	0	-78	multi-exon	FALSE	canonical	2	4	junction_3	1.24721912892465	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTCGCTCTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	24287066	24283340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24285564_24286078_24286243_24286582_24286668_24286875
ES_00051294	chr7	-	902	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	2	-5	2	5	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGGTATTTTCTCTTT	4497	False	NA	0	True	AATAAA	-29	NA	24672177	24669171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
ES_00051295	chr7	-	3609	23	FSM	ENSMUSG00000040907.16	ENSMUST00000080882.11	3621	23	12	0	-3	0	multi-exon	FALSE	canonical	2	6	junction_18	15.2038490124504	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24705371	24677591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700584_24705179
ES_00051297	chr7	-	2287	12	NNC	ENSMUSG00000057177.13	novel	2260	11	NA	NA	0	62775	intron_retention	FALSE	non_canonical	0	0	junction_1	112.445101389284	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGTGTGGGAGATTATA	NA	False	NA	NA	False	NA	NA	NA	24937276	24864907	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_24864935_24927682_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936802
ES_00051299	chr7	-	2386	4	ISM	ENSMUSG00000054499.10	ENSMUST00000058702.7	1828	5	38	0	38	0	intron_retention	FALSE	canonical	3	80	junction_2	8.17856276425687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919246	24902264	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225
ES_00051300	chr7	-	1828	5	FSM	ENSMUSG00000054499.10	ENSMUST00000058702.7	1828	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	35.6405667743935	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919284	24902264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919188
ES_00051301	chr7	-	1879	5	NIC	ENSMUSG00000054499.10	novel	1828	5	NA	NA	-62	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_4	23.466731770743	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919358	24902264	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919211
ES_00051302	chr7	-	3015	11	FSM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	0	-755	0	755	multi-exon	FALSE	canonical	3	276	junction_10	34.6278789416851	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGACTGATCTCATCCTC	NA	False	NA	NA	False	NA	NA	NA	24937276	24926927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936802
ES_00051303	chr7	-	3493	4	FSM	ENSMUSG00000040857.16	ENSMUST00000045847.15	3505	4	13	-1	13	1	multi-exon	FALSE	canonical	3	7	junction_2	2.82842712474619	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGATGCATATGAATGTT	4494	False	NA	NA	False	NA	NA	NA	24950173	24941984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24944957_24945058_24945175_24945512_24945748_24950003
ES_00051304	chr7	-	900	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	1	0	1	0	multi-exon	TRUE	canonical	3	245	junction_5	66.0714764478591	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8500	False	NA	-2	True	ATTAAA	-15	NA	24997410	24994473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ES_00051306	chr7	-	689	5	FSM	ENSMUSG00000005447.13	ENSMUST00000155118.2	679	5	0	-10	0	10	multi-exon	FALSE	canonical	3	245	junction_4	70.1141925718324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGCAAACCTGCTGTAC	8548	False	NA	NA	False	TTTAAA	-8	NA	24997362	24995380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ES_00051307	chr7	-	3574	10	FSM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	0	39	0	-39	multi-exon	FALSE	canonical	3	24	junction_6	4.8099690715363	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTAGCTTTGCTCACAA	NA	False	NA	79	True	ACTAAA	-38	NA	25095804	25078990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797_25084090_25084204_25084391_25084604_25084751_25084861_25084953_25087542_25088079_25094925
ES_00051315	chr7	-	2547	2	FSM	ENSMUSG00000061702.11	ENSMUST00000126983.2	2547	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATACTTTAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	25374543	25370621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25373086_25374460
ES_00051316	chr7	-	3011	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	21	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCATCTGTTATGTAA	NA	False	NA	-3	True	ATTAAA	-24	NA	25418492	25410530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
ES_00051317	chr7	-	3807	15	FSM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	0	-23	0	23	multi-exon	FALSE	canonical	3	866	junction_14	88.3957070247654	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTACTGCAGTTGGCCTT	9542	False	NA	-5	True	NA	NA	NA	25454182	25420566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
ES_00051318	chr7	-	4106	15	FSM	ENSMUSG00000040725.14	ENSMUST00000043765.14	3354	15	-435	-317	-428	0	multi-exon	FALSE	canonical	3	189	junction_14	237.54999473795	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	9656	False	NA	-28	True	AATAAA	-25	NA	25454610	25420589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453871
ES_00051323	chr7	-	2097	10	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24697	-250	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_9	17.7332776384533	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATGTGTGTTTTTCAT	NA	False	NA	3	True	CATAAA	-41	NA	26410559	26364901	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26410317
ES_00051324	chr7	-	2242	12	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24686	-328	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	23.333372687885	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGTTTGGTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	26410548	26364979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26390877_26390954_26392894_26393053_26410317
ES_00051325	chr7	-	2129	11	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24698	-328	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	22.9512526891235	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGTTTGGTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	26410560	26364979	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385794_26389739_26389834_26410317
ES_00051326	chr7	-	2241	11	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24710	-250	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	20.9334660293034	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATGTGTGTTTTTCAT	NA	False	NA	3	True	CATAAA	-41	NA	26410572	26364901	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26410317
ES_00051327	chr7	-	2090	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	17	0	17	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866210	26858082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ES_00051329	chr7	-	1375	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	0	-3	0	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878240	26867848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
ES_00051330	chr7	-	1192	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
ES_00051331	chr7	-	575	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	-3	0	1	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTTTGGTTTTTGG	NA	False	NA	1	True	AATACA	-19	NA	26880582	26879165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
ES_00051332	chr7	-	1293	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	0	-5	0	3	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGCTTTATTTTCC	NA	False	NA	-3	True	ATTAAA	-31	NA	26895185	26886426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ES_00051333	chr7	-	1341	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	-5	0	3	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGCTTTATTTTCC	NA	False	NA	-3	True	ATTAAA	-31	NA	26895670	26886426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ES_00051334	chr7	-	1366	7	FSM	ENSMUSG00000061479.16	ENSMUST00000080356.10	1365	7	0	-1	0	1	multi-exon	FALSE	canonical	3	1453	junction_6	315.533102683203	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTTGTCTGCTTTATT	NA	False	NA	-7	True	ATTAAA	-27	NA	26895696	26886430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
ES_00051335	chr7	-	3247	7	FSM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.28099317258495	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGGGTATTTTCTTGG	NA	False	NA	-2	True	AATAAA	-15	NA	26928053	26906596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376_26916591_26919024_26919128_26926775
ES_00051337	chr7	-	5386	33	FSM	ENSMUSG00000040488.19	ENSMUST00000038618.13	5386	33	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_32	158.898146917294	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCTGCCTGCCTTTTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	27037117	27004560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27034261_27034372_27034821_27034961_27035077_27035137_27036852
ES_00051338	chr7	-	5060	30	NNC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	0	0	intron_retention	FALSE	canonical	3	16	junction_16	136.31102087291	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGCCTCTGCCTGCCTT	NA	False	NA	-6	True	ATTAAA	-16	NA	27033038	27004564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023726_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
ES_00051339	chr7	-	2087	9	NNC	ENSMUSG00000040488.19	novel	5386	33	NA	NA	-580	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_8	184.947289788199	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCTGCCTGCCTTTTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	27010683	27004560	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27010313
ES_00051341	chr7	-	3633	23	FSM	ENSMUSG00000040488.19	ENSMUST00000206413.2	3643	23	10	0	10	0	multi-exon	FALSE	canonical	2	4	junction_1	89.041092287227	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGCCAGTTTGTAACT	NA	False	NA	NA	False	NA	NA	NA	27033063	27010984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27011238_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
ES_00051342	chr7	-	1213	6	FSM	ENSMUSG00000089832.9	ENSMUST00000148933.8	1140	6	-59	-14	-59	9	multi-exon	FALSE	canonical	3	25	junction_5	134.483604948707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGGTTTGTTCGGTTTT	NA	False	NA	-19	True	AATAAA	-26	NA	27045086	27041548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044841
ES_00051343	chr7	-	2361	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	15	-18	15	18	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCGGTTTTTGTTGTTGT	NA	False	NA	-10	True	AATAAA	-35	NA	27055429	27041539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ES_00051344	chr7	-	2421	17	FSM	ENSMUSG00000089832.9	ENSMUST00000123190.8	2412	17	0	-9	0	5	multi-exon	FALSE	canonical	3	16	junction_2	84.1649932795696	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTCTTGGTTTGTTCGG	NA	False	NA	-23	True	AATAAA	-22	NA	27055379	27041552	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27041970_27042070_27042183_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27055052_27055295
ES_00051346	chr7	-	1355	4	NNC	ENSMUSG00000092367.2	novel	556	7	NA	NA	-3959	-3735	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	12.4988888395018	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGCTGGTTTGTTCGTGT	NA	False	NA	-1	True	AATAAA	-19	NA	27060803	27055808	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27056876_27059167_27059211_27059359_27059534_27060732
ES_00051349	chr7	-	2278	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	0	4	0	-4	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGGTATGAGATGGTA	NA	False	NA	-3	True	AGTAAA	-27	NA	27252637	27231428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
ES_00051352	chr7	-	3678	10	FSM	ENSMUSG00000040390.14	ENSMUST00000036453.14	3682	10	0	4	0	-4	multi-exon	FALSE	canonical	0	0	junction_3	25.4209012865835	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTGGCTGTGTGTGC	NA	False	NA	-4	True	ATTAAA	-19	NA	27374019	27355803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27356412_27357276_27357958_27358254_27358368_27358445_27358600_27360959_27361077_27362649_27362897_27363822_27363999_27364374_27364524_27367773_27367955_27372767
ES_00051353	chr7	-	1622	2	FSM	ENSMUSG00000040390.14	ENSMUST00000138243.2	1621	2	0	-1	0	1	multi-exon	FALSE	canonical	3	84	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACTGCGTAGTCATTGAA	NA	False	NA	1	True	ACTAAA	-18	NA	27374006	27367571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27367955_27372767
ES_00051355	chr7	-	720	1	FSM	ENSMUSG00000074243.5	ENSMUST00000118212.2	609	1	-35	-76	-35	76	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTCATTGGGTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	27649223	27648503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27648500_27649200
ES_00051356	chr7	-	1050	1	ISM	ENSMUSG00000063047.10	ENSMUST00000205874.2	1907	6	18855	100	15084	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCGAAATAATGCATGGTG	NA	False	NA	NA	False	AATAAA	-24	NA	27659709	27658659	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_27658700_27659700
ES_00051360	chr7	-	6163	6	FSM	ENSMUSG00000096916.8	ENSMUST00000180502.8	6163	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	35.6482818660311	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTGCAAACTCTTAATG	NA	False	NA	NA	False	AATAAA	-43	NA	27713540	27684278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713440
ES_00051362	chr7	-	1421	12	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	24432	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	676.973783932754	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAGTGCTGACTGCTCT	NA	False	NA	NA	False	NA	NA	NA	27749481	27716699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27716729_27741134_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ES_00051363	chr7	-	1440	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749526	27741131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ES_00051364	chr7	-	854	5	FSM	ENSMUSG00000030603.17	ENSMUST00000138512.8	854	5	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_4	130.003846096952	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTAATTTCTTCTTAG	NA	False	NA	-13	True	AATAAA	-15	NA	27746447	27741140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27741346_27741525_27741582_27741763_27742152_27742233_27742402_27746410
ES_00051367	chr7	-	1532	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	0	-17	0	17	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGAATGTGGTTCTGGA	2656	False	NA	16	True	NA	NA	NA	28011497	28004923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ES_00051369	chr7	-	3762	29	FSM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	0	-7	0	0	multi-exon	FALSE	canonical	3	668	junction_13	69.0304945924152	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038131	28014315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776
ES_00051370	chr7	-	3531	29	NIC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_25	152.559502443192	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038171	28014315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ES_00051372	chr7	-	3640	31	FSM	ENSMUSG00000003435.10	ENSMUST00000207563.2	3640	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_28	195.98717645125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038171	28014315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037351_28037449_28037776_28037861_28038119
ES_00051379	chr7	-	754	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	-34	12576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.14245129835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCAGAAACCTGTAGAA	NA	False	NA	NA	False	NA	NA	NA	28092167	28072994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28073023_28086159_28086450_28090236_28090322_28090514_28090574_28091875
ES_00051380	chr7	-	4418	14	NNC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	0	25952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.945814957734	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCAGAAACCTGTAGAA	6636	False	NA	NA	False	NA	NA	NA	28135616	28072994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28073022_28098946_28101043_28101248_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ES_00051381	chr7	-	4748	13	NNC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	-88	25952	intron_retention	FALSE	non_canonical	0	0	junction_1	142.494712377532	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCAGAAACCTGTAGAA	6512	False	NA	NA	False	NA	NA	NA	28135740	28072994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28073022_28098946_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ES_00051383	chr7	-	1281	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTAGCTCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	28092133	28085570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
ES_00051387	chr7	-	3063	12	NNC	ENSMUSG00000030602.14	novel	2899	10	NA	NA	0	45824	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	271.957307052971	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCATGAGAAATGGCGAC	4596	False	NA	NA	False	NA	NA	NA	28297610	28212419	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28212445_28258246_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28269596_28269739_28297459
ES_00051388	chr7	-	1388	6	FSM	ENSMUSG00000047586.5	ENSMUST00000239002.2	1531	6	147	-4	147	4	multi-exon	FALSE	canonical	3	10	junction_1	2.92574776766556	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCAGAGGCTGGTTGTCT	NA	False	NA	NA	False	AATAAA	-29	NA	28246532	28243016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28243698_28243846_28243986_28244663_28244760_28245580_28245633_28245714_28245778_28246175
ES_00051389	chr7	-	2899	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	0	0	0	0	multi-exon	FALSE	canonical	3	622	junction_9	35.4843036069349	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4596	False	NA	-3	True	ATTAAA	-21	NA	28297610	28258243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
ES_00051391	chr7	-	890	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	-7	0	7	multi-exon	FALSE	canonical	3	939	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGGTGTCTGTCCCCGGGT	1694	False	NA	2	True	AATAAA	-31	NA	28441195	28439058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28439665_28440911
ES_00051393	chr7	-	1255	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	-12	0	12	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATTTCAGGTCCCGACC	NA	False	NA	13	True	AATAAA	-45	NA	28465939	28458444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ES_00051394	chr7	-	3878	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	0	-1	0	1	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCATCTTCTCCCT	NA	False	NA	0	True	AATAAA	-25	NA	28661765	28592671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
ES_00051395	chr7	-	793	9	NNC	ENSMUSG00000053565.11	novel	774	8	NA	NA	0	3560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1187.07221242012	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAGTTAAGAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	28681230	28667236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28667265_28670796_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
ES_00051396	chr7	-	775	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	0	-1	0	1	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGTCTCTTGCCTGTAC	NA	False	NA	-3	True	AATAAA	-18	NA	28681239	28670795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
ES_00051398	chr7	-	578	5	FSM	ENSMUSG00000053565.11	ENSMUST00000208707.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	1529.28437103764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAGGCATAACTGGCT	NA	False	NA	NA	False	NA	NA	NA	28681230	28674068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28674095_28676625_28676701_28677294_28677416_28679743_28679968_28681098
ES_00051399	chr7	-	1140	9	FSM	ENSMUSG00000030592.19	ENSMUST00000208318.2	3044	9	0	1904	0	-1904	multi-exon	TRUE	canonical	0	0	junction_4	3.11247489949718	5075	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTAGGCCTTGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	28746108	28723427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28723770_28735404_28735593_28737771_28737854_28739812_28739918_28740005_28740135_28740229_28740319_28743273_28743355_28745028_28745103_28746058
ES_00051401	chr7	-	2171	7	FSM	ENSMUSG00000030590.16	ENSMUST00000147561.8	2169	7	0	-2	0	0	multi-exon	FALSE	canonical	3	257	junction_2	24.4386988196999	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855608	28851934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ES_00051402	chr7	-	1634	6	FSM	ENSMUSG00000030590.16	ENSMUST00000150431.8	1632	6	0	-2	0	0	multi-exon	FALSE	canonical	3	257	junction_3	26.3210942021794	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855608	28851934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28855456_28855554
ES_00051405	chr7	-	1379	8	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	non_canonical	3	425	junction_1	479.284798806875	362	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCAGTCTGGCCCCCTT	NA	False	NA	-2	True	AATAAA	-23	NA	28879977	28873604	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28873786_28873805_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ES_00051406	chr7	-	1543	7	FSM	ENSMUSG00000030591.18	ENSMUST00000059642.17	1540	7	0	-3	0	3	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTATCCAGTCTGGCC	NA	False	NA	-7	True	AATAAA	-18	NA	28880126	28873609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ES_00051407	chr7	-	1457	4	FSM	ENSMUSG00000030587.6	ENSMUST00000032808.6	1466	4	0	9	0	-9	multi-exon	FALSE	canonical	3	53	junction_3	7.36357401145817	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGATCTACTTTGGGCTC	1783	False	NA	NA	False	NA	NA	NA	28947891	28945994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28947160_28947321_28947391_28947552_28947666_28947781
ES_00051409	chr7	-	1321	7	FSM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	0	-17	0	17	multi-exon	FALSE	canonical	0	0	junction_2	472.77185007382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTCTTGTGACTACTAG	467	False	NA	19	True	AATAAA	-37	NA	28981337	28955730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959481_28959555_28959795_28959856_28980936
ES_00051410	chr7	-	1229	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	0	-18	0	0	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTTGTTTTTGGT	469	False	NA	2	True	AATAAA	-39	NA	28981335	28955747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ES_00051411	chr7	-	1552	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	-152	-16	-152	-2	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTTTTGTTTTTG	315	False	NA	0	True	AATAAA	-37	NA	28981489	28955749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
ES_00051412	chr7	-	3588	10	FSM	ENSMUSG00000030583.17	ENSMUST00000182223.8	3697	10	115	-6	37	0	multi-exon	FALSE	canonical	3	18	junction_5	12.8216637660015	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTGTTCTCCTGCAGC	NA	False	NA	-1	True	AATAAA	-17	NA	29053607	29019796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479
ES_00051413	chr7	-	7649	22	NIC	ENSMUSG00000030583.17	novel	7713	23	NA	NA	6	0	combination_of_known_junctions	TRUE	canonical	3	33	junction_11	9.24962461700774	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	NA	False	NA	-7	True	AATAAA	-11	NA	29218060	29019802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030967_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975_29066228_29070389_29070665_29076920_29077498_29082620_29082779_29085480_29085585_29086577_29086753_29087387_29087577_29096575_29096707_29098751_29100575_29134173_29134251_29217889
ES_00051417	chr7	-	6371	5	FSM	ENSMUSG00000030583.17	ENSMUST00000182829.8	6385	5	0	14	0	-14	multi-exon	FALSE	canonical	3	21	junction_4	13.6267200749116	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCATTTAAAAAA	1021	False	NA	NA	False	NA	NA	NA	29041293	29022864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29028554_29030722_29030967_29031649_29031816_29038380_29038603_29041243
ES_00051419	chr7	-	213	1	Intergenic	novelGene_3670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAATGGAACATATG	NA	False	NA	NA	False	NA	NA	NA	29199395	29199182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_29199200_29199400
ES_00051421	chr7	-	3712	4	FSM	ENSMUSG00000050855.17	ENSMUST00000145098.2	3712	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	12.2836838484589	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGGTGTGTGTGTGT	3451	False	NA	NA	False	ATTAAA	-40	NA	29553066	29542674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29545674_29545893_29546386_29550366_29550443_29552921
ES_00051422	chr7	-	2828	5	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	9.83298021964857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3451	False	NA	-4	True	AATAAA	-21	NA	29553066	29543360	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
ES_00051423	chr7	-	2764	5	FSM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.6624340560681	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3444	False	NA	-4	True	AATAAA	-21	NA	29553073	29543360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552921
ES_00051424	chr7	-	3244	3	ISM	ENSMUSG00000050855.17	ENSMUST00000108223.8	2560	4	28	10318	0	-2	5prime_fragment	FALSE	canonical	3	25	junction_2	12.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGTGTGACTTTGTGG	3451	False	NA	-6	True	AATAAA	-19	NA	29553066	29543362	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_29546386_29550366_29550443_29552921
ES_00051426	chr7	-	3772	5	FSM	ENSMUSG00000062040.15	ENSMUST00000159920.2	3381	5	-19	-372	-19	-11	multi-exon	FALSE	canonical	2	3	junction_4	18.9802528961023	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTACCTCAAGTATCAT	NA	False	NA	NA	False	AAAAAG	-10	NA	29605976	29592768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605675
ES_00051427	chr7	-	4109	5	FSM	ENSMUSG00000062040.15	ENSMUST00000162592.8	3845	5	-85	-179	-85	179	multi-exon	FALSE	canonical	3	4	junction_4	18.5522909636519	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGAGTTCCAGGACAGCC	NA	False	NA	NA	False	NA	NA	NA	29606082	29592578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605634
ES_00051428	chr7	-	3620	5	NIC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	64	-105	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	15.9902313929474	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGTGTACCTGGCCT	NA	False	NA	NA	False	AGTAAA	-19	NA	29605893	29592862	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605634
ES_00051429	chr7	-	3679	5	NNC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	0	-105	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	19.5320249846246	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGTGTACCTGGCCT	NA	False	NA	NA	False	AGTAAA	-19	NA	29605957	29592862	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603329_29603469_29605634
ES_00051431	chr7	-	5645	6	NNC	ENSMUSG00000059975.16	novel	1278	7	NA	NA	0	-272	intron_retention	FALSE	canonical	3	19	junction_5	15.0119952038362	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACACACCAGAAGAGGGC	NA	False	NA	NA	False	NA	NA	NA	29653512	29630511	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29651138_29651316_29653279
ES_00051434	chr7	-	2924	1	FSM	ENSMUSG00000098022.8	ENSMUST00000183025.2	3276	1	245	107	245	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGAGCCAGAGGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	29756944	29754020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29754000_29756900
ES_00051435	chr7	-	2411	8	NIC	ENSMUSG00000058447.9	novel	2374	9	NA	NA	-148	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	44.1093261460796	1477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	9892	False	NA	NA	False	ATTAAA	-18	NA	29789983	29755458	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29780515_29780643_29786524_29786585_29789712
ES_00051436	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9923	False	NA	2	True	AAAACA	-22	NA	29789952	29776761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ES_00051438	chr7	-	398	1	FSM	ENSMUSG00002076246.1	ENSMUST00020183502.1	96	1	-350	48	-350	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTCAGGGCAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	29800710	29800312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29800300_29800700
ES_00051439	chr7	-	1243	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	0	-2	0	2	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTATTTTTTTAATGT	NA	False	NA	0	True	NA	NA	NA	29892397	29886358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
ES_00051442	chr7	-	1423	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	0	-7	0	7	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCTTGATTCCAGAAAGA	NA	False	NA	2	True	NA	NA	NA	29931697	29923548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ES_00051443	chr7	-	1293	5	NIC	ENSMUSG00000037020.17	novel	3245	23	NA	NA	35	4	combination_of_known_junctions	FALSE	canonical	3	45	junction_3	61.534543144481	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCTATAAAGCCCTTC	2084	False	NA	0	True	AATAAA	-25	NA	29941668	29939558	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569
ES_00051444	chr7	-	3252	23	FSM	ENSMUSG00000037020.17	ENSMUST00000134570.8	3245	23	0	-7	0	7	multi-exon	TRUE	canonical	1	24	junction_10	44.1382126754337	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTATAAAGCCCTTCTCA	3569	False	NA	3	True	AATAAA	-28	NA	29962072	29939555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036
ES_00051445	chr7	-	4714	33	NIC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	1	41	junction_22	30.5222607032556	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCTATAAAGCCCTTC	NA	False	NA	0	True	AATAAA	-25	NA	29979821	29939558	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ES_00051446	chr7	-	4772	33	FSM	ENSMUSG00000037020.17	ENSMUST00000145027.8	4768	33	0	-4	0	4	multi-exon	FALSE	canonical	1	5	junction_7	40.8660994705575	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCTATAAAGCCCTTC	NA	False	NA	0	True	AATAAA	-25	NA	29979821	29939558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942361_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ES_00051447	chr7	-	4746	33	FSM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	0	-4	0	4	multi-exon	FALSE	canonical	1	9	junction_7	40.394139716517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCTATAAAGCCCTTC	NA	False	NA	0	True	AATAAA	-25	NA	29979844	29939558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942458_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ES_00051448	chr7	-	4749	33	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	-8	4	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_7	46.8337735373736	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCTATAAAGCCCTTC	NA	False	NA	0	True	AATAAA	-25	NA	29979852	29939558	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942361_29942467_29942567_29942855_29942960_29943257_29943332_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ES_00051449	chr7	-	1868	1	FSM	ENSMUSG00000074211.5	ENSMUST00000098586.5	2490	1	622	0	622	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTGATTCTTTTATTA	NA	False	NA	5	True	AATAAA	-36	NA	30022698	30020830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30020800_30022700
ES_00051450	chr7	-	3229	3	FSM	ENSMUSG00000036957.9	ENSMUST00000046351.7	2886	3	-352	9	-352	-9	multi-exon	FALSE	canonical	3	10	junction_2	2	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTAAGCTCGGGCTGT	NA	False	NA	NA	False	AAGAAA	-7	NA	30062549	30054922	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30055529_30058808_30060240_30061357
ES_00051452	chr7	-	2345	17	FSM	ENSMUSG00000006651.9	ENSMUST00000006828.9	2343	17	0	-2	0	2	multi-exon	TRUE	canonical	3	317	junction_16	59.4064390449386	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTGTTTCTGTTGGAGA	NA	False	NA	0	True	AATAAA	-22	NA	30144960	30134404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568_30139728_30140479_30140555_30141066_30141198_30141594_30141786_30141904_30142039_30142222_30142336_30142516_30142650_30143742_30143887_30144746
ES_00051453	chr7	-	991	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8424	-6	-62	0	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136490	30134406	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
ES_00051461	chr7	-	2470	12	FSM	ENSMUSG00000036864.17	ENSMUST00000215288.2	2465	12	0	-5	0	5	multi-exon	TRUE	canonical	3	27	junction_11	10.5595517059866	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTACTGTTCATCT	NA	False	NA	-1	True	AATAAA	-21	NA	30251692	30238553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
ES_00051462	chr7	-	2471	12	FSM	ENSMUSG00000036864.17	ENSMUST00000108165.8	2466	12	0	-5	0	5	multi-exon	FALSE	canonical	3	10	junction_1	15.6395345622021	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTACTGTTCATCT	NA	False	NA	-1	True	AATAAA	-21	NA	30251697	30238553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30239004_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
ES_00051467	chr7	-	1175	9	FSM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	146	-9	-33	5	multi-exon	FALSE	canonical	3	52	junction_8	74.6976196073208	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGTGCATTTATTGGG	4839	False	NA	-1	True	NA	NA	NA	30259117	30254860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
ES_00051469	chr7	-	667	3	FSM	ENSMUSG00000036835.8	ENSMUST00000207747.2	669	3	0	2	0	0	multi-exon	FALSE	canonical	3	780	junction_1	38	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1444	False	NA	-5	True	AATAAA	-17	NA	30262512	30261289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30261560_30261748_30261854_30262220
ES_00051472	chr7	-	6356	35	FSM	ENSMUSG00000006307.17	ENSMUST00000131002.2	6345	35	0	-11	0	9	multi-exon	FALSE	canonical	3	26	junction_7	36.750962136971	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTGCCTTATTACTGT	NA	False	NA	-14	True	AATAAA	-27	NA	30284765	30268273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270267_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608_30282888_30283124_30283181_30283341_30283622_30283873_30284025_30284117_30284232_30284418
ES_00051473	chr7	-	8488	37	FSM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	0	-19	0	19	multi-exon	FALSE	canonical	3	32	junction_36	36.953257094288	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTACTGTGGTTGTTGTG	NA	False	NA	-4	True	AATAAA	-37	NA	30288142	30268263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608_30282888_30283124_30283181_30283341_30283622_30283873_30284025_30284117_30284232_30284418_30286455_30286679_30286753_30287779
ES_00051474	chr7	-	1521	5	ISM	ENSMUSG00000006307.17	ENSMUST00000131002.2	6345	35	14431	-3	-245	1	intron_retention	FALSE	canonical	3	153	junction_4	15.7876534038469	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGGTCTTTCCGTGCCTT	NA	False	NA	-22	True	AATAAA	-19	NA	30270334	30268281	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715
ES_00051477	chr7	-	950	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	27.8960122598195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298319	30289105	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30298204
ES_00051479	chr7	-	618	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	1366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTATTGTGTGTGTG	NA	False	NA	NA	False	AATGAA	-20	NA	30325576	30316285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
ES_00051482	chr7	-	1526	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_5	209.790818435889	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACTGGACTTAGAAACT	3784	False	NA	-12	True	AATAAA	-18	NA	30349569	30340423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ES_00051483	chr7	-	1685	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	99	0	-74	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3710	False	NA	-14	True	AATAAA	-16	NA	30349643	30340425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ES_00051484	chr7	-	3821	25	FSM	ENSMUSG00000094365.2	ENSMUST00000146232.2	3821	25	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	360.970989908546	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	NA	False	NA	-14	True	AATAAA	-16	NA	30364362	30340425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362_30349609_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357344_30357927_30358091_30358277_30358409_30358487_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ES_00051487	chr7	-	2192	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	0	-5	0	0	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	-4	True	AATAAA	-15	NA	30364419	30353135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ES_00051488	chr7	-	1788	12	FSM	ENSMUSG00000078762.11	ENSMUST00000126511.8	1788	12	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_6	41.5395858198255	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAATAAATCTAAAA	NA	False	NA	NA	False	NA	NA	NA	30364385	30357512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30358091_30358277_30358409_30358487_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ES_00051489	chr7	-	676	2	FSM	ENSMUSG00000049761.7	ENSMUST00000051495.7	699	2	11	12	6	-12	multi-exon	FALSE	canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATATCCCGGCTTTGCCTG	NA	False	NA	NA	False	AATAAA	-9	NA	30371019	30370158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30370606_30370790
ES_00051490	chr7	-	739	6	FSM	ENSMUSG00000006315.10	ENSMUST00000209065.2	727	6	0	-12	0	12	multi-exon	FALSE	canonical	3	791	junction_1	3.48711915483254	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCTCTCTCTCAGAAACC	-11	True	NA	0	True	AGTAAA	-30	NA	30428746	30427113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626
ES_00051491	chr7	-	786	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	0	-12	0	12	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCTCTCTCTCAGAAACC	9290	False	NA	0	True	AGTAAA	-30	NA	30428932	30427113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
ES_00051493	chr7	-	835	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207263.2	835	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	291.92945304569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAGTGAAGTAAACAGT	9288	False	NA	-45	True	NA	NA	NA	30428934	30427158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428167_30428626_30428697_30428768
ES_00051495	chr7	-	2419	10	FSM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_9	26.650458036969	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCTTTGGCCTTACCA	8764	False	NA	NA	False	NA	NA	NA	30656228	30644672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
ES_00051496	chr7	-	3993	18	Fusion	ENSMUSG00000001247.17_ENSMUSG00000058239.14	novel	2021	10	NA	NA	0	0	multi-exon	TRUE	canonical	3	69	junction_8	48.7885771417406	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTACAGGCCTGGAATC	NA	False	NA	NA	False	NA	NA	NA	30672747	30646175	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ES_00051498	chr7	-	2074	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	0	-3	0	1	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAAGCCTCTTGTTTTGCTG	NA	False	NA	-2	True	AATAAA	-18	NA	30672852	30657198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ES_00051499	chr7	-	2167	10	FSM	ENSMUSG00000001247.17	ENSMUST00000001279.15	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672889	30657199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ES_00051500	chr7	-	505	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	877	-1	intron_retention	FALSE	canonical	3	42	junction_4	22.1923410211721	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCATGGCCTCTGTCTTC	7737	False	NA	-11	True	GATAAA	-15	NA	30736486	30732158	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736452
ES_00051501	chr7	-	793	8	FSM	ENSMUSG00000009687.15	ENSMUST00000161805.8	1166	8	370	3	370	1	multi-exon	FALSE	canonical	0	0	junction_7	43.7875203542689	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGAATTT	3329	False	NA	-2	True	GATAAA	-24	NA	30740894	30732149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821
ES_00051502	chr7	-	620	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	888	1	intron_retention	FALSE	canonical	3	10	junction_4	35.9513560244951	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGAATTT	7748	False	NA	-2	True	GATAAA	-24	NA	30736475	30732149	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736335
ES_00051505	chr7	-	1502	5	FSM	ENSMUSG00000019194.16	ENSMUST00000211945.2	1501	5	0	-1	0	1	multi-exon	FALSE	canonical	3	16	junction_4	3.69966214673719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTATTCTCTCATTAACA	NA	False	NA	0	True	AATAAA	-17	NA	30826269	30815947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30816721_30817130_30817273_30822330_30822572_30824479_30824647_30826090
ES_00051506	chr7	-	1598	6	FSM	ENSMUSG00000019194.16	ENSMUST00000098548.8	1573	6	-25	0	-25	0	multi-exon	FALSE	canonical	3	16	junction_5	3.38230690505755	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTATTCTCTCATTAAC	NA	False	NA	-1	True	AATAAA	-16	NA	30826453	30815948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30816562_30816648_30816721_30817130_30817273_30822330_30822572_30824479_30824647_30826090
ES_00051507	chr7	-	3723	18	FSM	ENSMUSG00000001248.16	ENSMUST00000185985.7	3722	18	0	-1	0	1	multi-exon	FALSE	canonical	3	189	junction_17	34.4459860006517	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTACCTGTGGGGT	5756	False	NA	0	True	AATAAA	-16	NA	30850437	30829550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ES_00051508	chr7	-	3811	19	FSM	ENSMUSG00000001248.16	ENSMUST00000188032.7	3810	19	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_18	91.9743657255503	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTACCTGTGGGGT	5756	False	NA	0	True	AATAAA	-16	NA	30850437	30829550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30845174_30845263_30850320
ES_00051509	chr7	-	2736	19	FSM	ENSMUSG00000001248.16	ENSMUST00000186634.7	2735	19	0	-1	0	1	multi-exon	FALSE	canonical	3	18	junction_6	68.1079390234699	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTACCTGTGGGGT	5735	False	NA	0	True	AATAAA	-16	NA	30850458	30829550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30834950_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ES_00051510	chr7	-	2714	19	FSM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	0	-1	0	1	multi-exon	FALSE	canonical	3	173	junction_6	41.078853711152	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTACCTGTGGGGT	5686	False	NA	0	True	AATAAA	-16	NA	30850507	30829550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ES_00051517	chr7	-	1964	8	FSM	ENSMUSG00000036459.16	ENSMUST00000038537.9	1962	8	0	-2	0	2	multi-exon	FALSE	canonical	3	249	junction_5	31.7027005866976	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTGGTTATTTCTCAT	NA	False	NA	0	True	AATATA	-22	NA	33832693	33808965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099_33818231_33818361_33818425_33818563_33818632_33824909_33825012_33831913
ES_00051518	chr7	-	978	7	FSM	ENSMUSG00000036459.16	ENSMUST00000140911.4	968	7	0	-10	0	0	multi-exon	FALSE	canonical	3	259	junction_4	28.1286725997197	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGGGACGCCGCTGCTA	NA	False	NA	NA	False	NA	NA	NA	33832243	33809640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099_33818231_33818361_33818632_33824909_33825012_33831913
ES_00051520	chr7	-	1373	1	FSM	ENSMUSG00000052997.16	ENSMUST00000205711.2	1373	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCTGCATACTTGTCA	NA	False	NA	-26	True	AATAAA	-1	NA	33841511	33840138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33840100_33841500
ES_00051522	chr7	-	631	3	FSM	ENSMUSG00000052997.16	ENSMUST00000142763.2	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	1357	junction_2	103.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCAGGAAGGCAGGTGC	9129	False	NA	NA	False	NA	NA	NA	33845708	33841853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33842300_33843914_33844021_33845629
ES_00051523	chr7	-	210	2	Antisense	novelGene_ENSMUSG00000081491.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATTGTTTTTTATGCTT	3871	False	NA	NA	False	NA	NA	NA	33941217	33859259	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_33859436_33941183
ES_00051525	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	5732	False	NA	-6	True	TATAAA	-15	NA	33896086	33883923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ES_00051526	chr7	-	959	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5785	False	NA	NA	False	ATTAAA	-20	NA	33896033	33884057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ES_00051528	chr7	-	2882	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	0	2	0	-2	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCTTAGGGTTTTATTG	NA	False	NA	NA	False	AATAAA	-12	NA	33929761	33900756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ES_00051529	chr7	-	4984	9	FSM	ENSMUSG00000036427.6	ENSMUST00000135243.3	3195	9	-1146	-643	-1146	-186	multi-exon	FALSE	canonical	3	1605	junction_5	199.218433823279	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACCCAGGGATGAACT	NA	False	NA	NA	False	NA	NA	NA	33910948	33900940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674
ES_00051530	chr7	-	6224	14	FSM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_13	29.0706138861218	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTATCTTTTTTAAATT	9808	False	NA	NA	False	ATTAAA	-18	NA	34012976	33936131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012911
ES_00051531	chr7	-	6202	14	NIC	ENSMUSG00000066571.14	novel	6224	14	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_13	26.7307415605834	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTATCTTTTTTAAATT	9825	False	NA	NA	False	ATTAAA	-18	NA	34012959	33936131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012916
ES_00051532	chr7	-	317	2	FSM	ENSMUSG00000066571.14	ENSMUST00000205581.2	851	2	534	0	534	0	multi-exon	FALSE	canonical	3	143	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCCAGATCAGTCTTGAA	NA	False	NA	NA	False	AATAAA	-11	NA	33956110	33953466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33953510_33955836
ES_00051536	chr7	-	2516	7	FSM	ENSMUSG00000030499.10	ENSMUST00000108069.8	2407	7	-10	-99	-10	99	multi-exon	TRUE	canonical	3	15	junction_6	8.78761755097605	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATCGAGGAAGGAGCAT	6789	False	NA	88	True	NA	NA	NA	34353833	34338339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34353671
ES_00051538	chr7	-	2162	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	-18	228	7	63	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAGAAAAAAAATTTTTAAT	NA	False	NA	64	True	NA	NA	NA	34512129	34374120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
ES_00051539	chr7	-	4713	2	FSM	ENSMUSG00000056216.10	ENSMUST00000130491.3	4709	2	0	-4	0	4	multi-exon	FALSE	canonical	3	425	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTATCACGTGTCTGAAG	NA	False	NA	NA	False	AATAAA	-22	NA	34755998	34745842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34750358_34755800
ES_00051543	chr7	-	3066	20	FSM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	0	-1	0	1	multi-exon	FALSE	canonical	3	140	junction_17	13.3084023611853	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTCTTGATTTCTTTTG	NA	False	NA	NA	False	ATTAAA	-19	NA	35017865	34975959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
ES_00051546	chr7	-	1857	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_2	4.92160768674447	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATCCACAGGCTATAT	NA	False	NA	NA	False	AATAGA	-24	NA	35096261	35091576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
ES_00051549	chr7	-	2275	11	FSM	ENSMUSG00000030491.17	ENSMUST00000205407.2	1412	11	0	-863	0	863	multi-exon	FALSE	canonical	2	20	junction_10	140.166365437647	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTTTGTTTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	35237118	35192170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35236938
ES_00051550	chr7	-	1640	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	0	-20	0	17	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATTTATTTCTCAT	NA	False	NA	7	True	NA	NA	NA	35237170	35193016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ES_00051551	chr7	-	2302	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	-3	-1	-3	1	multi-exon	FALSE	canonical	3	351	junction_1	2	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTTTTATTCTACTT	NA	False	NA	3	True	ATTAAA	-30	NA	35255732	35246608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35247549_35250878_35251087_35254578
ES_00051552	chr7	-	1331	2	FSM	ENSMUSG00000034875.6	ENSMUST00000123469.2	738	2	-138	-455	-138	0	multi-exon	FALSE	canonical	3	351	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTGCTCCCTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	35251606	35246945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35247549_35250878
ES_00051554	chr7	-	691	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	0	-7	0	7	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTGCATTTTGAATGATT	NA	False	NA	NA	False	NA	NA	NA	35346946	35341399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
ES_00051557	chr7	-	6633	8	NNC	ENSMUSG00000044452.11	novel	6693	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	31	junction_1	12.7487494384703	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTCTAAGTTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	35502379	35471767	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_35475180_35475204_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
ES_00051558	chr7	-	6698	7	FSM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	-5	0	-5	0	multi-exon	FALSE	canonical	3	57	junction_5	5.55777733351102	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTCTAAGTTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	35502419	35471767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
ES_00051560	chr7	-	944	6	FSM	ENSMUSG00000044452.11	ENSMUST00000187282.3	944	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	23.3957261054236	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCAACTAGCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	35502392	35475398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35500862_35500954_35502258
ES_00051563	chr7	-	3441	11	FSM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_5	45.4049556766659	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCTGCTTTATCTA	NA	False	NA	-5	True	ATTAAA	-24	NA	37718967	37659416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718534
ES_00051564	chr7	-	3450	10	NIC	ENSMUSG00000030421.10	novel	3441	11	NA	NA	-20	0	intron_retention	FALSE	canonical	3	145	junction_9	251.968251968378	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCTGCTTTATCTA	NA	False	NA	-5	True	ATTAAA	-24	NA	37719011	37659416	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37718534
ES_00051565	chr7	-	439	5	FSM	ENSMUSG00000030421.10	ENSMUST00000206169.2	440	5	0	1	0	-1	multi-exon	FALSE	canonical	3	18	junction_4	395.637065376843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTATTGTTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	37718947	37669030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718850
ES_00051566	chr7	-	2000	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	0	0	0	0	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806959	37797408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ES_00051569	chr7	-	2786	4	FSM	ENSMUSG00000056383.11	ENSMUST00000071804.10	2671	4	-115	0	4	0	multi-exon	FALSE	canonical	3	26	junction_3	27.3901847788988	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTTCTGACTTTT	NA	False	NA	-14	True	AATAAA	-25	NA	41042799	41022346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650
ES_00051570	chr7	-	2071	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41042803	41023213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
ES_00051571	chr7	-	3451	4	FSM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	482	-522	0	522	multi-exon	FALSE	canonical	3	38	junction_1	6.97614984548545	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACAATAAAATTCTGAAAT	NA	False	NA	NA	False	NA	NA	NA	41148832	41127775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41130924_41131989_41132051_41132256_41132384_41148717
ES_00051573	chr7	-	1430	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATCACTGTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	41210253	41195097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
ES_00051575	chr7	-	217	1	FSM	ENSMUSG00000092193.2	ENSMUST00000174687.2	650	1	35	398	35	-398	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTCTTCGGGTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	41332696	41332479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41332500_41332700
ES_00051576	chr7	-	1287	1	FSM	ENSMUSG00000048574.10	ENSMUST00000155338.2	1287	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATACCTCCAATGGACTGC	NA	False	NA	NA	False	NA	NA	NA	41756609	41755322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41755300_41756600
ES_00051577	chr7	-	446	1	FSM	ENSMUSG00000092257.2	ENSMUST00000166539.3	1004	1	696	-138	696	138	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTCTCTTGAATACAT	NA	False	NA	NA	False	NA	NA	NA	41774931	41774485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41774500_41774900
ES_00051578	chr7	-	3974	6	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	6	10	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	98.7813747626545	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGTCTTGGGATAATGA	NA	False	NA	-5	True	AATAAA	-25	NA	42155143	42122799	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42155033
ES_00051579	chr7	-	4079	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	0	-10	0	10	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGTCTTGGGATAATGA	NA	False	NA	-5	True	AATAAA	-25	NA	42155150	42122799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
ES_00051580	chr7	-	4034	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	78.7541886011292	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155145	42122809	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
ES_00051582	chr7	-	3897	4	Fusion	ENSMUSG00000069727.6_ENSMUSG00000108446.2_ENSMUSG00000092335.2	novel	1425	4	NA	NA	-52	2439	intron_retention	FALSE	canonical	3	108	junction_2	60.7417118260225	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTCTTAACCACTGAGC	NA	False	NA	NA	False	NA	NA	NA	42342218	42226767	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_42230333_42232070_42232132_42314441_42314569_42342074
ES_00051583	chr7	-	1425	4	FSM	ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATAATCAGTTTGATGA	NA	False	NA	NA	False	NA	NA	NA	42241971	42229206	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ES_00051585	chr7	-	1976	4	FSM	ENSMUSG00000074158.10	ENSMUST00000098503.9	1976	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	11.7284080571728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATGTGGTAAGGCCCT	NA	False	NA	NA	False	NA	NA	NA	42291971	42261927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42263648_42265396_42265458_42265656_42265784_42291903
ES_00051586	chr7	-	4072	5	NNC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	0	158414	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	80.2725824924052	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTAGTAATTTGTTT	NA	False	NA	-6	True	AATAAA	-18	NA	42516658	42307838	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_42308724_42467138_42470028_42471782_42471844_42472041_42472168_42516547
ES_00051587	chr7	-	3149	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	0	-1	0	1	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGTGTCCTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	42342142	42309527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
ES_00051588	chr7	-	322	1	FSM	ENSMUSG00000091594.3	ENSMUST00000180131.2	123	1	34	-233	34	233	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCACATCACAATAATCC	NA	False	NA	NA	False	NA	NA	NA	42355759	42355437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42355400_42355800
ES_00051590	chr7	-	4073	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTTCATTAGTAATTT	NA	False	NA	-14	True	AATAAA	-14	NA	42516658	42466252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
ES_00051591	chr7	-	330	1	ISM	ENSMUSG00000090751.3	ENSMUST00000163803.3	9153	6	30757	6025	30757	-6025	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGCAATTGTGCATGGA	NA	False	NA	NA	False	NA	NA	NA	42552489	42552159	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_42552200_42552500
ES_00051592	chr7	-	337	1	FSM	ENSMUSG00000044609.7	ENSMUST00000165198.2	789	1	448	4	448	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTGAAATGCTAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	42603364	42603027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42603000_42603400
ES_00051593	chr7	-	2074	2	Intergenic	novelGene_3696	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	69	junction_1	0	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGCAAAGAAGACATTAGAG	NA	False	NA	NA	False	NA	NA	NA	42649493	42647341	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_42648664_42648741
ES_00051595	chr7	-	288	2	Antisense	novelGene_ENSMUSG00000064194.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	125	junction_1	0	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTATTTGGAGAGTA	NA	False	NA	NA	False	NA	NA	NA	42803212	42802756	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_42802946_42803113
ES_00051596	chr7	-	4335	4	FSM	ENSMUSG00000012640.17	ENSMUST00000048015.14	4333	4	0	-2	0	2	multi-exon	FALSE	canonical	3	88	junction_2	3.29983164553722	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTCATATTGCTTTTT	NA	False	NA	2	True	AATAAA	-18	NA	42960910	42945944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454
ES_00051598	chr7	-	4186	5	FSM	ENSMUSG00000012640.17	ENSMUST00000107986.9	4184	5	0	-2	0	2	multi-exon	FALSE	canonical	3	60	junction_4	14.2894191624432	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTCATATTGCTTTTT	NA	False	NA	2	True	AATAAA	-18	NA	42962679	42945944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960610_42962527
ES_00051603	chr7	-	1872	7	FSM	ENSMUSG00000008140.19	ENSMUST00000118808.9	1872	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTCTTGGTTCATTCC	NA	False	NA	28	True	NA	NA	NA	44145953	44139360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ES_00051604	chr7	-	1719	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	-57	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145887	44139534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ES_00051609	chr7	-	1967	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107910.8	1948	10	0	-19	0	0	multi-exon	FALSE	canonical	0	0	junction_9	233.829683717988	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203347	44199039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203232
ES_00051610	chr7	-	1998	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	0	-10	0	9	multi-exon	TRUE	canonical	0	0	junction_9	219.110209599227	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGGAGAGGGTGGGC	NA	False	NA	9	True	AATAAA	-40	NA	44203372	44199030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ES_00051612	chr7	-	2170	9	FSM	ENSMUSG00000060601.14	ENSMUST00000123358.9	1853	9	16	-333	0	0	multi-exon	FALSE	canonical	0	0	junction_8	201.405336014218	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203319	44199075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203232
ES_00051616	chr7	-	1440	7	FSM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	0	-2	0	0	multi-exon	TRUE	canonical	3	22	junction_6	22.8837642591132	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	44263549	44255226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263374
ES_00051618	chr7	-	4580	27	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	27634	0	-5082	0	3prime_fragment	FALSE	canonical	3	8	junction_26	21.7727640513985	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	44287291	44255226	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806_44281968_44282358_44282429_44282898_44283021_44283782_44283971_44287188
ES_00051623	chr7	-	8750	17	FSM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_4	26.4359485360371	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCCATGTTAGTGCCAA	7703	False	NA	NA	False	TTTAAA	-7	NA	44498499	44484046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ES_00051624	chr7	-	2411	16	FSM	ENSMUSG00000038520.16	ENSMUST00000139947.8	2411	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	26.7432234407148	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCACGGTGTAGTGTTCA	7867	False	NA	NA	False	NA	NA	NA	44498335	44490324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44490845_44490966_44491054_44491406_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ES_00051626	chr7	-	2362	17	FSM	ENSMUSG00000038520.16	ENSMUST00000145959.8	2362	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	59.8690954813082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7699	False	NA	-10	True	AATAAA	-15	NA	44498503	44490455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491609_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ES_00051628	chr7	-	1899	12	FSM	ENSMUSG00000038502.18	ENSMUST00000046575.17	1883	12	0	-16	0	15	multi-exon	FALSE	canonical	3	715	junction_7	41.0738097969944	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTCGTTAAGTTACA	5440	False	NA	7	True	AATAAA	-30	NA	44519212	44512475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ES_00051629	chr7	-	2003	13	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	-304	0	combination_of_known_junctions	FALSE	canonical	3	386	junction_1	117.813647577671	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTCCCTCCCTGCTT	5136	False	NA	-9	True	AATAAA	-14	NA	44519516	44512491	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ES_00051631	chr7	-	3693	18	FSM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	207.582576223432	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGGCCGTGGGCTTTCC	6976	False	NA	-4	True	NA	NA	NA	44541815	44526188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44527715_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ES_00051632	chr7	-	2619	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	9929	False	NA	-6	True	AATAAA	-17	NA	44542136	44528807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ES_00051633	chr7	-	2685	17	FSM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	0	-7	0	0	multi-exon	FALSE	canonical	3	744	junction_8	64.3087948398195	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	7001	False	NA	-6	True	AATAAA	-17	NA	44541790	44528807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ES_00051635	chr7	-	2304	18	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	175	junction_9	180.66160609536	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6966	False	NA	-13	True	AATAAA	-10	NA	44541825	44528814	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533675_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ES_00051636	chr7	-	2229	17	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_3	203.468018064265	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6966	False	NA	-13	True	AATAAA	-10	NA	44541825	44528814	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ES_00051642	chr7	-	3313	23	FSM	ENSMUSG00000060279.15	ENSMUST00000107857.11	3301	23	0	-12	0	0	multi-exon	FALSE	canonical	0	0	junction_5	144.442358888666	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGACTGCCCACCCTG	NA	False	NA	-2	True	AATAAA	-25	NA	44578850	44549796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
ES_00051644	chr7	-	2749	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	44	0	-29	0	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCACTGTGCTTTTCTGCG	2708	False	NA	-2	True	AATAAA	-20	NA	44624231	44608796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
ES_00051646	chr7	-	2145	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	0	2	0	-2	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGCTGTTTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	44635916	44625414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ES_00051647	chr7	-	1508	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635992	44626181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
ES_00051650	chr7	-	490	5	FSM	ENSMUSG00000109324.3	ENSMUST00000209056.3	490	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1505.47490430761	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCATACGCCTTGGAT	NA	False	NA	NA	False	NA	NA	NA	44635740	44628806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44628950_44631010_44631075_44631170_44631318_44632909_44633012_44635706
ES_00051652	chr7	-	1083	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	-8	0	8	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTGTACATTTGC	NA	False	NA	NA	False	ATTAAA	-29	NA	44647003	44640637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ES_00051657	chr7	-	4293	11	FSM	ENSMUSG00000038406.18	ENSMUST00000085383.11	4293	11	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	46.9408137978029	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	5054	False	NA	-6	True	ATTAAA	-17	NA	44665787	44652371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44665503
ES_00051658	chr7	-	4322	12	NIC	ENSMUSG00000038406.18	novel	4293	11	NA	NA	-116	14	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	81.4000426421802	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACCCTTGAAGTAAATGG	5170	False	NA	8	True	ATTAAA	-31	NA	44665671	44652357	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44663628_44663760_44665503
ES_00051662	chr7	-	1625	8	FSM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	0	-2	0	2	multi-exon	FALSE	canonical	3	9	junction_7	11.5121940673747	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTTCTGGGCGCATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	44712101	44703005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011_44711076_44711801
ES_00051663	chr7	-	1348	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	-53	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAATAAAAATGCAA	NA	False	NA	-53	True	AATAAA	-15	NA	44711129	44703036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
ES_00051664	chr7	-	2328	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	-1131	-321	-159	2	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTTCTGGGCGCATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	44712260	44703005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
ES_00051667	chr7	-	1450	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	7	-4	0	4	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATC	6667	False	NA	0	True	AATAAA	-29	NA	44741638	44732332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
ES_00051668	chr7	-	1367	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTGTCTGTCTG	6689	False	NA	-6	True	AATAAA	-23	NA	44741616	44732338	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
ES_00051670	chr7	-	1761	7	FSM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	0	9	0	-9	multi-exon	FALSE	canonical	3	66	junction_3	11.6583303550151	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCATATAGACACCTCT	765	False	NA	58	True	AATAAA	-17	NA	44753275	44742422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063
ES_00051671	chr7	-	1843	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2678	-9	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	26.6075023945027	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCATATAGACACCTCT	NA	False	NA	58	True	AATAAA	-17	NA	44755953	44742422	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753185_44755780
ES_00051673	chr7	-	597	2	FSM	ENSMUSG00000003420.9	ENSMUST00000211535.2	595	2	0	-2	0	2	multi-exon	FALSE	canonical	3	98	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGTCTCTGTGTCCGTCT	821	False	NA	NA	False	AATACA	-15	NA	44753219	44752256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44752698_44753063
ES_00051675	chr7	-	665	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	0	-4	0	4	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	2277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTCTCATGTGTCCTGG	NA	False	NA	3	True	AATAAA	-28	NA	44773863	44771798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ES_00051676	chr7	-	493	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	12273.9079045755	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	False	NA	-55	True	NA	NA	NA	44773759	44771856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ES_00051678	chr7	-	1047	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	0	0	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	9830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	False	NA	-1	True	AATAAA	-19	NA	44778185	44774981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ES_00051679	chr7	-	465	4	FSM	ENSMUSG00000074129.15	ENSMUST00000210792.2	464	4	0	-1	0	0	multi-exon	FALSE	canonical	3	15796	junction_2	745.970955645504	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44776303	44775345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132
ES_00051680	chr7	-	992	6	FSM	ENSMUSG00000074129.15	ENSMUST00000210073.2	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	15796	junction_2	955.88798506938	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44777247	44775345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776699_44776919
ES_00051681	chr7	-	518	6	FSM	ENSMUSG00000074129.15	ENSMUST00000209711.2	495	6	0	-23	0	0	multi-exon	FALSE	canonical	3	10	junction_3	7852.53911547087	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778050	44775345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44777965
ES_00051682	chr7	-	538	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209212.2	514	7	0	-24	0	0	multi-exon	FALSE	canonical	3	332	junction_3	5972.4797311409	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778126	44775345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ES_00051683	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	5939.18297480076	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778144	44775345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ES_00051684	chr7	-	490	4	FSM	ENSMUSG00000074129.15	ENSMUST00000209967.2	470	4	0	-20	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7940.61084971847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATAAAGACTGTTTGCC	NA	False	NA	6	True	NA	NA	NA	44776335	44775368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132
ES_00051685	chr7	-	582	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	0	-20	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCATGCCTGCCTGGCCT	NA	False	NA	-11	True	AATAAA	-9	NA	44778160	44775351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ES_00051686	chr7	-	734	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAAATCTGCAAGTT	NA	False	NA	-52	True	NA	NA	NA	44778159	44775426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ES_00051689	chr7	-	3537	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	0	0	0	0	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGTTTTTGTTTTGG	9333	False	NA	NA	False	NA	NA	NA	44803997	44790328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
ES_00051692	chr7	-	2028	20	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	383	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_11	15.2344557716802	217	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9461	False	NA	-4	True	NA	NA	NA	44853933	44833047	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373_44839452_44842599_44842651_44842882_44843001_44843383_44843546_44843773_44843841_44844952_44845018_44845391_44845579_44845930_44846036_44849668_44849810_44853866
ES_00051694	chr7	-	2558	6	FSM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	0	-17	0	12	multi-exon	FALSE	canonical	3	78	junction_5	4.63033476111609	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAAAATAGCTTTATTCT	4444	False	NA	-1	True	AATAAA	-37	NA	44888239	44883043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
ES_00051696	chr7	-	1289	9	FSM	ENSMUSG00000030798.16	ENSMUST00000033063.15	1268	9	0	-21	0	12	multi-exon	FALSE	canonical	3	15	junction_8	25.228641957109	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAAAATAGCTTTATTCT	4144	False	NA	-1	True	AATAAA	-37	NA	44888539	44883043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
ES_00051703	chr7	-	1571	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1057	-2	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGCTTTTGTTCTTAAGA	5929	False	NA	0	True	NA	NA	NA	44991641	44988547	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
ES_00051705	chr7	-	407	2	FSM	ENSMUSG00000003872.10	ENSMUST00000211416.2	405	2	0	-2	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	9923	False	NA	1	True	TTTAAA	-16	NA	45018026	45017314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45017423_45017727
ES_00051706	chr7	-	735	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7942	False	NA	1	True	TTTAAA	-16	NA	45020007	45017314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
ES_00051708	chr7	-	644	2	FSM	ENSMUSG00000003872.10	ENSMUST00000209226.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAACAAGATTGGCAGGT	8179	False	NA	NA	False	NA	NA	NA	45019770	45018986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45019411_45019550
ES_00051709	chr7	-	1735	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9041	False	NA	0	True	AATAAA	-25	NA	45045166	45025876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ES_00051710	chr7	-	4017	10	FSM	ENSMUSG00000063511.12	ENSMUST00000211366.2	4008	10	0	-9	0	0	multi-exon	FALSE	canonical	3	95	junction_3	443.86935014709	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9125	False	NA	0	True	AATAAA	-25	NA	45045082	45025876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45026703_45026779_45026868_45030140_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ES_00051712	chr7	-	787	1	FSM	ENSMUSG00000063511.12	ENSMUST00000210583.2	1897	1	1061	49	498	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCTGGGAATCAAACTC	9677	False	NA	NA	False	NA	NA	NA	45041247	45040460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45040500_45041200
ES_00051714	chr7	-	1835	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	0	-1	0	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGCTGTGTCCTCAGA	9182	False	NA	-3	True	TATAAA	-16	NA	45084047	45071320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ES_00051716	chr7	-	846	9	FSM	ENSMUSG00000003868.15	ENSMUST00000211666.2	846	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_8	800.022880532176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCCGCTCTTCCCTCAC	9096	False	NA	NA	False	NA	NA	NA	45084133	45074374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083781_45084043
ES_00051717	chr7	-	625	2	FSM	ENSMUSG00000050708.17	ENSMUST00000211694.2	604	2	0	-21	0	20	multi-exon	FALSE	canonical	3	56898	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGAGGGGTGCACGAGA	NA	False	NA	1	True	AATAAA	-37	NA	45108223	45107347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45107708_45107958
ES_00051718	chr7	-	846	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	0	-21	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45108887	45107367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45107708_45107958_45108085_45108507
ES_00051719	chr7	-	964	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	-21	0	20	multi-exon	FALSE	canonical	3	43	junction_2	31741.9424561398	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGAGGGGTGCACGAGA	NA	False	NA	1	True	AATAAA	-37	NA	45109263	45107347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
ES_00051720	chr7	-	988	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	-20	0	20	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	2562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGAGGGGTGCACGAGA	NA	False	NA	1	True	AATAAA	-37	NA	45109308	45107347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
ES_00051721	chr7	-	803	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	0	-2	0	2	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCTTGTCCGCCCAGC	9977	False	NA	0	True	AATAAA	-24	NA	45116260	45111118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ES_00051722	chr7	-	869	6	FSM	ENSMUSG00000003873.12	ENSMUST00000033093.10	867	6	0	-2	0	2	multi-exon	FALSE	canonical	3	2296	junction_5	352.488638114762	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCTTGTCCGCCCAGC	9915	False	NA	0	True	AATAAA	-24	NA	45116322	45111118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ES_00051723	chr7	-	1100	5	FSM	ENSMUSG00000003873.12	ENSMUST00000210392.2	1100	5	0	0	0	0	multi-exon	FALSE	canonical	3	3046	junction_1	70.515955641259	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCCCACTGCCT	9982	False	NA	NA	False	NA	NA	NA	45116255	45111290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ES_00051725	chr7	-	5323	7	FSM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	6.73300329224139	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTCCAATTCAGTGTT	NA	False	NA	-9	True	ACTAAA	-4	NA	45138229	45120410	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
ES_00051726	chr7	-	4868	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	0	-15	0	15	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGATCTCTTTGGGGTT	NA	False	NA	NA	False	AATAAA	-30	NA	45159830	45139866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ES_00051729	chr7	-	939	3	FSM	ENSMUSG00000030827.6	ENSMUST00000033099.6	951	3	0	12	0	-12	multi-exon	FALSE	canonical	2	3	junction_1	4.5	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTTTGTTAAAGAACT	NA	False	NA	NA	False	AATAAA	-17	NA	45264914	45263321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45263735_45264289_45264394_45264492
ES_00051730	chr7	-	1542	2	FSM	ENSMUSG00000110357.2	ENSMUST00000211533.2	1542	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAGGACCAAG	NA	False	NA	NA	False	NA	NA	NA	45288189	45285103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45286563_45288106
ES_00051734	chr7	-	3076	6	ISM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	297	812	197	6	intron_retention	FALSE	canonical	3	87	junction_5	18.0554700852678	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCCCTTCCACCCGACA	3459	False	NA	-18	True	AATAAA	-23	NA	45367129	45359702	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416
ES_00051735	chr7	-	3137	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	0	-560	0	-240	multi-exon	FALSE	canonical	3	8	junction_5	47.003829631212	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCATTGTTCTTGTACC	3262	False	NA	NA	False	NA	NA	NA	45367326	45359130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
ES_00051736	chr7	-	1242	6	FSM	ENSMUSG00000003271.18	ENSMUST00000210754.2	1242	6	17	-17	17	0	multi-exon	FALSE	canonical	2	9	junction_2	2.60768096208106	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	3805	False	NA	NA	False	AATAAA	-17	NA	45391890	45379406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477
ES_00051740	chr7	-	2555	12	NNC	ENSMUSG00000003269.18	novel	2519	12	NA	NA	0	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	132.289502216518	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTCTTCACCCTTTCA	3162	False	NA	NA	False	NA	NA	NA	45463735	45456027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457876_45459549_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
ES_00051742	chr7	-	975	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	0	-8	0	8	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTCCTCTTTCATCC	NA	False	NA	5	True	AGTAAA	-37	NA	45546138	45536260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
ES_00051743	chr7	-	722	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTAAACAGCCTGT	NA	False	NA	-64	True	NA	NA	NA	45546094	45536329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
ES_00051744	chr7	-	798	5	FSM	ENSMUSG00000040212.13	ENSMUST00000164119.3	784	5	0	-14	0	9	multi-exon	FALSE	canonical	1	1	junction_4	25.7730479377197	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCCTTCCTTAACAAC	4911	False	NA	NA	False	AATAAA	-29	NA	45570275	45567437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570059
ES_00051745	chr7	-	654	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	82	0	-20	0	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGCTCCTCTTCCTTC	4440	False	NA	NA	False	AATAAA	-20	NA	45570746	45567446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
ES_00051746	chr7	-	257	2	FSM	ENSMUSG00000030834.8	ENSMUST00000210962.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTCCTCATCCTAAAAC	NA	False	NA	NA	False	ATTAAA	-19	NA	45622743	45616982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45617145_45622648
ES_00051748	chr7	-	630	4	FSM	ENSMUSG00000030839.13	ENSMUST00000156147.8	662	4	32	0	32	0	multi-exon	FALSE	canonical	2	2	junction_3	45.5802101306648	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGGTGTGAGAGCGAG	NA	False	NA	-77	True	NA	NA	NA	46252634	46092644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46252523
ES_00051749	chr7	-	1440	1	FSM	ENSMUSG00000110316.2	ENSMUST00000211086.2	1330	1	-280	170	-280	-170	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACATGCCTATAATCCCA	NA	False	NA	NA	False	AGTAAA	-24	NA	46162484	46161044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46161000_46162500
ES_00051750	chr7	-	722	4	FSM	ENSMUSG00000030839.13	ENSMUST00000135035.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	37.7477004450455	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTCCCCCAGGCCATTG	NA	False	NA	NA	False	NA	NA	NA	46289055	46282105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46282179_46283178_46283335_46284844_46284981_46288698
ES_00051752	chr7	-	4624	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	22	82	0	-82	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCCTATGTTCTCCC	NA	False	NA	NA	False	TTTAAA	-29	NA	46360082	46335613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ES_00051753	chr7	-	2228	10	FSM	ENSMUSG00000006763.15	ENSMUST00000210628.2	2228	10	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	42.8860102660904	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTTGTATTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	46360082	46341239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ES_00051756	chr7	-	5214	23	FSM	ENSMUSG00000014418.17	ENSMUST00000014562.14	4953	23	-261	0	-224	0	multi-exon	FALSE	canonical	3	17	junction_22	12.9471270625399	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATATGAGATTTACTT	NA	False	NA	2	True	AATAAA	-26	NA	46445712	46409889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46444851
ES_00051761	chr7	-	2124	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	100	-275	0	275	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGGTGATTTTCACAGA	NA	False	NA	NA	False	AATAAA	-8	NA	46569617	46538421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ES_00051765	chr7	-	1004	3	FSM	ENSMUSG00000043262.17	ENSMUST00000207738.2	3226	3	310	1912	310	105	multi-exon	FALSE	canonical	3	52	junction_2	9	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTATTGTCAGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	46605475	46597660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46597797_46600575_46600740_46604771
ES_00051768	chr7	-	3593	13	FSM	ENSMUSG00000046179.18	ENSMUST00000119223.2	3499	13	-94	0	-94	0	multi-exon	FALSE	canonical	3	85	junction_12	21.1073644336126	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATTTTCATTTGGCC	NA	False	NA	-1	True	ATTAAA	-17	NA	48531438	48516176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48531155
ES_00051770	chr7	-	1691	1	FSM	ENSMUSG00000092118.2	ENSMUST00000169357.2	1691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTCTTTGTACAAGTC	NA	False	NA	4	True	ATTAAA	-19	NA	51512015	51510324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_51510300_51512000
ES_00051773	chr7	-	637	1	FSM	ENSMUSG00000099647.2	ENSMUST00000122119.2	321	1	-46	-270	-46	270	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTCAGTGCTACTTC	NA	False	NA	NA	False	AATAAA	-35	NA	54062272	54061635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_54061600_54062300
ES_00051775	chr7	-	3197	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ES_00051776	chr7	-	2816	5	FSM	ENSMUSG00000047037.6	ENSMUST00000052204.6	3183	5	367	0	367	0	multi-exon	FALSE	canonical	3	26	junction_2	3.34477204006491	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGACCCAAATAATAGTT	NA	False	NA	NA	False	NA	NA	NA	55669335	55627314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55629652_55635151_55635313_55646181_55646273_55647263_55647312_55669156
ES_00051777	chr7	-	524	1	FSM	ENSMUSG00000108443.2	ENSMUST00000206288.2	4532	1	3023	985	3023	-985	mono-exon	FALSE	NA	NA	NA	NA	NA	1283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTTTAAGGC	NA	False	NA	NA	False	NA	NA	NA	55664204	55663680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55663700_55664200
ES_00051778	chr7	-	836	1	FSM	ENSMUSG00000108347.2	ENSMUST00000206781.2	892	1	-43	99	-43	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTCCCTTGTGGCCAG	NA	False	NA	NA	False	NA	NA	NA	55867044	55866208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55866200_55867000
ES_00051779	chr7	-	3313	1	FSM	ENSMUSG00000109086.2	ENSMUST00000207988.2	2421	1	-73	-819	-73	819	mono-exon	FALSE	NA	NA	NA	NA	NA	5381	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAGAGAGAA	NA	False	NA	NA	False	AATAAA	-25	NA	57531047	57527734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_57527700_57531000
ES_00051781	chr7	-	7736	3	FSM	ENSMUSG00000077191.3_ENSMUSG00000100826.7	ENSMUST00000188976.2	2193	3	-5543	0	-1100	0	multi-exon	FALSE	canonical	3	77	junction_2	5.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATAGTTTGTGTTTTTC	NA	False	NA	-6	True	ATTAAA	-20	NA	59629722	59619324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_59620292_59621627_59621693_59623018
ES_00051782	chr7	-	6343	5	ISM	ENSMUSG00000077191.3_ENSMUSG00000100826.7	ENSMUST00000189581.7	6861	12	-3115	32206	0	0	5prime_fragment	FALSE	canonical	3	50	junction_4	15.4008928312614	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATAGTTTGTGTTTTTC	NA	False	NA	-6	True	ATTAAA	-20	NA	59628622	59619324	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_59620292_59621627_59621693_59623018_59623399_59623594_59623648_59623744
ES_00051783	chr7	-	1932	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTCTCAGAAGTCAATG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ES_00051784	chr7	-	681	1	FSM	ENSMUSG00000109222.2	ENSMUST00000207136.2	651	1	18	-48	18	48	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTATATTTAATGCT	NA	False	NA	NA	False	NA	NA	NA	60403743	60403062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_60403100_60403700
ES_00051785	chr7	-	2547	1	FSM	ENSMUSG00000070527.4	ENSMUST00000094340.4	2547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGACTCTTTTTTTAAT	NA	False	NA	0	True	AATAAA	-18	NA	62069887	62067340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_62067300_62069900
ES_00051786	chr7	-	2640	1	FSM	ENSMUSG00000070526.3	ENSMUST00000094339.3	2640	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAGCCTAACATTTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	62114258	62111618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_62111600_62114300
ES_00051787	chr7	-	2078	10	FSM	ENSMUSG00000030525.9	ENSMUST00000032738.7	2078	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.31478255248951	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCTATCTATCCATC	NA	False	NA	NA	False	NA	NA	NA	62862261	62748439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_62749491_62753527_62753638_62754725_62754813_62755751_62755947_62757299_62757468_62760144_62760225_62798330_62798441_62809284_62809330_62861855_62861996_62862169
ES_00051788	chr7	-	1023	5	FSM	ENSMUSG00000030525.9	ENSMUST00000208304.2	2814	5	3	1788	3	-1788	multi-exon	FALSE	canonical	3	12	junction_1	6.86931583201704	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGGCATTGCCACGTGCC	NA	False	NA	NA	False	AAAAAG	-14	NA	62862314	62790960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_62791544_62798330_62798441_62809284_62809330_62861855_62861996_62862169
ES_00051790	chr7	-	6399	2	FSM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	0	-3	0	3	multi-exon	FALSE	canonical	3	56	junction_1	0	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGCCTCGGTTGAGGGG	NA	False	NA	-10	True	AATAAA	-19	NA	63588663	63536095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_63541546_63587714
ES_00051791	chr7	-	604	2	NNC	ENSMUSG00000052040.11	novel	6396	2	NA	NA	1105	41	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATTGCACAAATACAGC	NA	False	NA	NA	False	NA	NA	NA	63587558	63541089	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_63541546_63587410
ES_00051796	chr7	-	3414	1	FSM	ENSMUSG00000033458.18	ENSMUST00000206730.2	3130	1	-39	-245	0	245	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGTAAAGACGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	64023828	64020414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_64020400_64023800
ES_00051797	chr7	-	2253	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	-5	0	5	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCTTATTTCATCTTACA	NA	False	NA	2	True	NA	NA	NA	64042016	64026269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
ES_00051798	chr7	-	6026	1	FSM	ENSMUSG00000070520.5	ENSMUST00000094331.5	5946	1	-47	-33	-47	33	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCCAAAATTTTTAAATT	NA	False	NA	NA	False	AATAAA	-11	NA	64522792	64516766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_64516800_64522800
ES_00051799	chr7	-	6836	27	NIC	ENSMUSG00000030516.15	novel	7049	28	NA	NA	-27	0	intron_retention	FALSE	canonical	3	43	junction_1	33.0858664117024	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTAGTTTGGTTTATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	65021014	64945912	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_64947416_64949477_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
ES_00051800	chr7	-	6102	27	FSM	ENSMUSG00000030516.15	ENSMUST00000032729.8	6102	27	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	23.0143060730422	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTCTTTGGGCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	65020763	64946455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_64947416_64949417_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
ES_00051805	chr7	-	3441	13	FSM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	0	2	0	-2	multi-exon	FALSE	canonical	3	10	junction_1	4.11214326382511	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATTGTTTTTCATTGG	NA	False	NA	-2	True	AATAAA	-17	NA	66077265	66040639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721_66055907_66057548_66057652_66058913_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
ES_00051806	chr7	-	1606	7	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	-71	17626	-71	-5	5prime_fragment	FALSE	canonical	3	14	junction_3	2.80871659105879	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTAGACTCTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	66077336	66058263	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
ES_00051807	chr7	-	4928	6	FSM	ENSMUSG00000030509.18	ENSMUST00000124899.8	4928	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	20.3273215156351	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGAATTTGTGTTTTCTT	NA	False	NA	-2	True	ATTAAA	-32	NA	66339344	66294312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_66297674_66309397_66310004_66328827_66329090_66331452_66331557_66338570_66338669_66338847
ES_00051808	chr7	-	5016	7	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	29	junction_2	17.1407571465077	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGAATTTGTGTTTTCTT	NA	False	NA	-2	True	ATTAAA	-32	NA	66339343	66294312	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
ES_00051812	chr7	-	5538	12	FSM	ENSMUSG00000030557.18	ENSMUST00000156690.8	5538	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	17.206571875376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGACTCTGTCATGTTTG	NA	False	NA	NA	False	AGTAAA	-24	NA	67022606	66880910	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66894268_66894293_66901404_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999616_66999670_67022460
ES_00051816	chr7	-	2898	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	10	43	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGCCTGGACACACAACC	545	False	NA	41	True	NA	NA	NA	67295006	67163114	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ES_00051817	chr7	-	2924	10	FSM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	0	-1	0	1	multi-exon	FALSE	canonical	3	32	junction_5	16.1894646431591	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTCTCTCCTCCTGTT	572	False	NA	-1	True	AATAAA	-17	NA	67294979	67163156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ES_00051819	chr7	-	7241	4	FSM	ENSMUSG00000030554.17	ENSMUST00000074233.12	7818	4	572	5	563	3	multi-exon	FALSE	canonical	2	3	junction_3	2.05480466765633	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTCTCACTTGTGGGA	NA	False	NA	NA	False	AATAAA	-16	NA	67408869	67379912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_67386655_67388852_67388924_67401551_67401677_67408566
ES_00051820	chr7	-	3908	8	FSM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	0	-3	0	3	multi-exon	FALSE	canonical	3	375	junction_1	213.33809518495	2446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGGCTCATTTTTTTCT	NA	False	NA	0	True	AATAAA	-19	NA	68398989	68386739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_68389282_68389632_68389788_68390702_68390866_68391392_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ES_00051821	chr7	-	1129	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398936	68391258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ES_00051822	chr7	-	445	1	FSM	ENSMUSG00000030551.15	ENSMUST00000208681.2	1275	1	-350	1180	-324	-1180	mono-exon	FALSE	NA	NA	NA	NA	NA	3320	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGAGCTCTCCCGGTT	NA	False	NA	NA	False	GGGGCT	-42	NA	70009993	70009548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_70009500_70010000
ES_00051825	chr7	-	649	1	FSM	ENSMUSG00000081895.4	ENSMUST00000119383.2	555	1	-47	-47	-47	47	mono-exon	FALSE	NA	NA	NA	NA	NA	649	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTGTTTAGCTACTT	7641	False	NA	NA	False	AATAAA	-31	NA	72299106	72298457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_72298500_72299100
ES_00051826	chr7	-	9085	39	FSM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	12.1879612278661	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGCTAACCAGTTACATT	NA	False	NA	2	True	ATTAAA	-25	NA	73191494	73076385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_73079749_73085482_73085727_73091333_73091548_73093982_73094083_73096882_73097062_73098904_73099040_73101446_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ES_00051829	chr7	-	1915	1	FSM	ENSMUSG00000108812.2	ENSMUST00000205707.2	1460	1	-96	-359	-96	359	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGCTGTCACTGTGGT	NA	False	NA	NA	False	NA	NA	NA	73178569	73176654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_73176700_73178600
ES_00051831	chr7	-	5143	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	0	-3	0	3	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGTTGTATGACTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	73208143	73189545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
ES_00051832	chr7	-	2830	1	FSM	ENSMUSG00000101970.9	ENSMUST00000189960.2	2824	1	0	-6	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCAGTTTGGGCCTTTT	NA	False	NA	-6	True	AATAAA	-19	NA	73196613	73193783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_73193800_73196600
ES_00051836	chr7	-	5368	6	FSM	ENSMUSG00000025789.10	ENSMUST00000026896.10	5368	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2.31516738055805	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTGTCTATAGAGGC	NA	False	NA	NA	False	NA	NA	NA	73663422	73588866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_73593213_73610439_73610734_73616488_73616747_73621665_73621795_73626405_73626469_73663144
ES_00051840	chr7	-	4364	14	FSM	ENSMUSG00000059146.13	ENSMUST00000039438.9	3977	14	-387	0	34	0	multi-exon	FALSE	canonical	3	25	junction_10	6.48804088737217	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCATCAGACCTCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	78228117	77950437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
ES_00051842	chr7	-	907	3	NNC	ENSMUSG00000030610.14	novel	1439	4	NA	NA	9	-1417	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	42.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGGCCCGTTGAGTAC	NA	False	NA	NA	False	ACTAAA	-13	NA	78483927	78472711	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_78473009_78477319_78477861_78483858
ES_00051843	chr7	-	2263	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	20	-14	20	12	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATGTTTCCCTCACCC	NA	False	NA	11	True	AATAAA	-32	NA	78496991	78477207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
ES_00051844	chr7	-	1622	7	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	0	63672	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	454.00614900388	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTGGCTGGGACCCTG	NA	False	NA	NA	False	NA	NA	NA	78792798	78719843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_78719872_78783515_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616
ES_00051845	chr7	-	1620	7	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	0	63672	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	454.00614900388	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTGGCTGGGACCCTG	NA	False	NA	NA	False	NA	NA	NA	78792798	78719843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_78719872_78783517_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616
ES_00051846	chr7	-	3358	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATCTCTTCCAATGTC	2275	False	NA	NA	False	AATAGA	-44	NA	78780766	78764849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
ES_00051847	chr7	-	2330	6	FSM	ENSMUSG00000030605.16	ENSMUST00000206338.2	2330	6	0	0	0	0	multi-exon	FALSE	canonical	3	1186	junction_2	28.6733325583198	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78793534	78783515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616
ES_00051848	chr7	-	2010	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	0	-2	0	2	multi-exon	FALSE	canonical	3	790	junction_6	144.155948541848	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGCCTCCTCATTGCC	NA	False	NA	-3	True	AATACA	-21	NA	78798801	78783513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
ES_00051849	chr7	-	2128	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	0	-3	0	2	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGCCTCCTCATTGCC	NA	False	NA	-3	True	AATACA	-21	NA	78798808	78783513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
ES_00051853	chr7	-	2244	9	FSM	ENSMUSG00000039194.17	ENSMUST00000179243.3	2142	9	-102	0	-102	0	multi-exon	FALSE	canonical	3	11	junction_8	4.45638586749397	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTTTCATGATGAACTT	NA	False	NA	-15	True	AATAAA	-22	NA	79036898	79024617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436
ES_00051861	chr7	-	247	1	FSM	ENSMUSG00000108318.2	ENSMUST00000206746.2	1671	1	283	1141	283	-1141	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCACACCCTTGATTAAAG	NA	False	NA	NA	False	NA	NA	NA	79253141	79252894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79252900_79253100
ES_00051863	chr7	-	4577	19	FSM	ENSMUSG00000050382.15	ENSMUST00000183846.8	4577	19	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	9.36634374031449	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGCTTACATCTTAAAT	NA	False	NA	0	True	AATAAA	-15	NA	79365468	79347845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79348664_79348897_79349045_79349134_79349334_79349929_79350137_79350696_79350913_79351853_79352031_79352200_79352327_79352526_79352725_79354374_79354578_79356483_79356637_79356736_79356853_79357267_79357426_79358169_79358389_79358913_79359031_79359792_79360313_79360450_79360845_79361160_79361362_79363578_79363931_79365412
ES_00051865	chr7	-	2246	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	0	-5	0	5	multi-exon	TRUE	canonical	3	20	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCTGTGAGTGTGTCTGC	NA	False	NA	NA	False	AATAAA	-23	NA	79392828	79385699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79387659_79389912_79390029_79392657
ES_00051868	chr7	-	5817	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	0	-4	0	4	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCCATGCATTTCACTC	NA	False	NA	2	True	AATAAA	-18	NA	79570397	79525068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ES_00051869	chr7	-	292	1	FSM	ENSMUSG00000108350.2	ENSMUST00000206403.2	2296	1	1777	227	1777	-227	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTCTCGAAGAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	79572838	79572546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79572500_79572800
ES_00051870	chr7	-	2201	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	76	0	76	0	multi-exon	FALSE	canonical	3	36	junction_1	5.76194411635517	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGACTGAGGCTTTGAGG	9969	False	NA	NA	False	NA	NA	NA	79585031	79575108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
ES_00051871	chr7	-	864	1	FSM	ENSMUSG00000108655.2	ENSMUST00000206423.2	1450	1	298	288	298	-288	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTTATACCGTGAGT	3227	False	NA	NA	False	NA	NA	NA	79739881	79739017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79739000_79739900
ES_00051874	chr7	-	2628	1	FSM	ENSMUSG00000108494.2	ENSMUST00000206384.2	1831	1	-818	21	-818	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	79763200	79760572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79760600_79763200
ES_00051876	chr7	-	1120	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	-107	-311	0	299	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGAGATAGCTCACTTAG	2133	False	NA	NA	False	GATAAA	-21	NA	79882479	79876595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
ES_00051877	chr7	-	1264	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	82	-299	0	299	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGAGATAGCTCACTTAG	2133	False	NA	NA	False	GATAAA	-21	NA	79882479	79876595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ES_00051879	chr7	-	3321	9	FSM	ENSMUSG00000038930.12	ENSMUST00000047362.11	3336	9	15	0	-8	0	multi-exon	FALSE	canonical	3	15	junction_3	12.4197423483742	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTGCACACCAGAAG	NA	False	NA	NA	False	ATTAAA	-8	NA	79974157	79965337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79969962_79970049_79970447_79970609_79970930_79971024_79971092_79973497
ES_00051880	chr7	-	2237	7	FSM	ENSMUSG00000038930.12	ENSMUST00000123109.8	2237	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	12.8192563486863	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	79973873	79966388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79970930_79971024_79971092_79973497
ES_00051881	chr7	-	2500	7	FSM	ENSMUSG00000038930.12	ENSMUST00000148001.8	2595	7	95	0	42	0	multi-exon	FALSE	canonical	3	21	junction_3	10.2143689640297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGACAAAGCTTACAAG	NA	False	NA	NA	False	NA	NA	NA	79974107	79966490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79966799_79967200_79967231_79968606_79969090_79969839_79969962_79970049_79970930_79971024_79971092_79973497
ES_00051887	chr7	-	3611	21	ISM	ENSMUSG00000030533.17	ENSMUST00000154428.9	3932	22	499	0	499	0	3prime_fragment	TRUE	canonical	1	1	junction_20	21.6	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	79990729	79975039	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989816_79990266_79990679
ES_00051891	chr7	-	6465	25	NNC	ENSMUSG00000038886.11	novel	6554	24	NA	NA	48	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.4058697612111	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCAGTGAAGTTACTTG	4049	False	NA	2	True	AATAAA	-23	NA	80021075	79998841	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_79999222_79999265_80001600_80002673_80002782_80002909_80003111_80006089_80006227_80007990_80008133_80008657_80008792_80009027_80009143_80009383_80009507_80010643_80010881_80012046_80012213_80012356_80012425_80012636_80012752_80012901_80013085_80013214_80013418_80013675_80013854_80016616_80016804_80017058_80017233_80017444_80017573_80017961_80018134_80018253_80018399_80018467_80018726_80019340_80019494_80020479_80020678_80020849
ES_00051892	chr7	-	6509	24	FSM	ENSMUSG00000038886.11	ENSMUST00000098346.5	6554	24	48	-3	48	3	multi-exon	FALSE	canonical	0	0	junction_22	14.6847142211905	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCAGTGAAGTTACTTG	4049	False	NA	2	True	AATAAA	-23	NA	80021075	79998841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80001600_80002673_80002782_80002909_80003111_80006089_80006227_80007990_80008133_80008657_80008792_80009027_80009143_80009383_80009507_80010643_80010881_80012046_80012213_80012356_80012425_80012636_80012752_80012901_80013085_80013214_80013418_80013675_80013854_80016616_80016804_80017058_80017233_80017444_80017573_80017961_80018134_80018253_80018399_80018467_80018726_80019340_80019494_80020479_80020678_80020849
ES_00051897	chr7	-	1514	3	FSM	ENSMUSG00000053158.11	ENSMUST00000206002.2	1921	3	0	407	0	-392	multi-exon	FALSE	canonical	2	11	junction_2	2.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCCCCAAGAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	80030184	80027912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80028684_80029358_80029483_80029565
ES_00051898	chr7	-	4334	16	FSM	ENSMUSG00000030530.16	ENSMUST00000122232.8	4286	16	-48	0	-48	0	multi-exon	FALSE	canonical	3	55	junction_15	14.0469055508876	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGTCTCCAGTGTCTAT	3631	False	NA	0	True	ATTAAA	-22	NA	80052558	80038941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80041045_80041255_80041367_80041475_80041601_80041934_80042115_80042217_80042336_80042421_80042526_80042631_80042733_80043156_80043370_80045082_80045256_80045707_80045797_80046676_80046754_80046869_80046999_80047645_80047742_80047842_80047942_80048341_80048677_80052277
ES_00051900	chr7	-	6735	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	0	-2137	0	1877	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	80184867	80102603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
ES_00051904	chr7	-	7412	38	FSM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	40	-8	40	8	multi-exon	FALSE	canonical	3	539	junction_37	55.7931586507513	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTGGTTTTATTGTT	NA	False	NA	-1	True	AATAAA	-27	NA	80453124	80361322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
ES_00051905	chr7	-	921	7	NNC	ENSMUSG00000025724.13	novel	728	7	NA	NA	0	47030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	367.667271078379	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTAAGAGAAGACAGGCAA	1654	False	NA	NA	False	NA	NA	NA	80597259	80507606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_80507638_80565310_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ES_00051907	chr7	-	2554	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	0	-5	0	4	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTGTATGAGTACAC	NA	False	NA	1	True	AATAAA	-20	NA	80550980	80540466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
ES_00051909	chr7	-	2116	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	2	-4	2	4	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTGTATGAGTACAC	NA	False	NA	1	True	AATAAA	-20	NA	80551015	80540466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ES_00051910	chr7	-	3080	6	FSM	ENSMUSG00000025722.17	ENSMUST00000135905.8	3080	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	8.49941174435031	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550982	80541008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
ES_00051912	chr7	-	773	3	FSM	ENSMUSG00000025723.13	ENSMUST00000119428.2	678	3	0	-95	0	88	multi-exon	FALSE	canonical	2	4	junction_1	6	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCCCATCACCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	80554808	80551886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80552247_80553881_80554055_80554568
ES_00051913	chr7	-	706	3	FSM	ENSMUSG00000025723.13	ENSMUST00000026817.11	705	3	0	-1	0	0	multi-exon	FALSE	canonical	2	13	junction_1	1.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGGCCTCTCCTTCCA	NA	False	NA	NA	False	AATAAA	-22	NA	80554824	80551974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80552252_80553881_80554055_80554568
ES_00051915	chr7	-	1345	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1385	False	NA	-5	True	AATAAA	-18	NA	80597528	80565124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ES_00051916	chr7	-	752	4	FSM	ENSMUSG00000025724.13	ENSMUST00000136556.2	2927	4	0	2175	0	-2175	multi-exon	FALSE	canonical	3	936	junction_1	15.121728296285	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATTACTTTAAACATGGT	1423	False	NA	NA	False	NA	NA	NA	80597490	80572817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80572969_80577484_80577635_80584774_80584885_80597149
ES_00051917	chr7	-	348	1	FSM	ENSMUSG00000083820.2	ENSMUST00000118488.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTAGGGGCTGTGTCCTG	4367	False	NA	NA	False	NA	NA	NA	80811492	80811144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80811100_80811500
ES_00051920	chr7	-	396	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	-13	0	10	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTTGCTGTTAGGGTC	NA	False	NA	1	True	AATAAA	-23	NA	80994975	80992469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
ES_00051921	chr7	-	678	4	FSM	ENSMUSG00000061787.16	ENSMUST00000134425.8	660	4	0	-18	0	10	multi-exon	FALSE	canonical	3	12924	junction_1	185.347121789241	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTTGCTGTTAGGGTC	NA	False	NA	1	True	AATAAA	-23	NA	80994982	80992469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604
ES_00051922	chr7	-	505	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	0	-11	0	10	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	6031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTTGCTGTTAGGGTC	NA	False	NA	1	True	AATAAA	-23	NA	80995002	80992469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
ES_00051923	chr7	-	673	4	FSM	ENSMUSG00000061787.16	ENSMUST00000156346.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_3	2067.57361819759	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCCCGCATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	80994980	80993164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80993549_80994058_80994165_80994604_80994757_80994949
ES_00051925	chr7	-	3198	12	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	0	99	combination_of_known_junctions	FALSE	canonical	3	7	junction_10	18.5343103771633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGATACCAGCCCAGAG	NA	False	NA	99	True	NA	NA	NA	81104506	80996674	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021952_81085950_81086126_81104381
ES_00051927	chr7	-	3112	12	FSM	ENSMUSG00000025586.18	ENSMUST00000098331.10	3111	12	0	-1	0	1	multi-exon	FALSE	canonical	3	28	junction_5	13.4250290487089	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTAGTTTTGTCTCTGTAT	NA	False	NA	1	True	AATAAA	-16	NA	81104506	80996772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104381
ES_00051928	chr7	-	1777	12	FSM	ENSMUSG00000025586.18	ENSMUST00000178892.3	1777	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	20.1469805788927	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCAACTCGCTGCACAG	NA	False	NA	NA	False	NA	NA	NA	81104423	80998027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021952_81085950_81086126_81104381
ES_00051930	chr7	-	3659	26	NIC	ENSMUSG00000062444.16	novel	3806	26	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_25	13.1209755734854	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTCACCTTTCCT	NA	False	NA	-1	True	AATAAA	-15	NA	81139558	81110148	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81139285
ES_00051931	chr7	-	3804	26	FSM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	0	2	0	-2	multi-exon	FALSE	canonical	3	16	junction_25	15.5434873821804	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTCACCTTTCCT	7640	False	NA	-1	True	AATAAA	-15	NA	81143673	81110148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
ES_00051934	chr7	-	2403	1	FSM	ENSMUSG00000104453.2	ENSMUST00000193864.2	2213	1	-80	-110	-80	110	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGATGCAGAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	81182349	81179946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81179900_81182300
ES_00051935	chr7	-	1736	9	FSM	ENSMUSG00000025813.15	ENSMUST00000026922.15	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	3.99804639792987	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	81356692	81259477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268431_81273999_81274093_81286108_81286241_81299301_81299459_81356506
ES_00051936	chr7	-	1972	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	3109	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	126.089254102005	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAAAGATACATCATAGTG	NA	False	NA	NA	False	NA	NA	NA	81439213	81428820	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ES_00051938	chr7	-	791	5	NNC	ENSMUSG00000025102.15	novel	504	4	NA	NA	0	1898	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	119.015492688977	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTAAGCCTACAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	81439213	81430031	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439072
ES_00051939	chr7	-	1120	5	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	216	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	112.09008653757	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGCAGTGGTGGCGCAC	NA	False	NA	NA	False	GATAAA	-4	NA	81439213	81431713	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439072
ES_00051940	chr7	-	1229	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	13	-355	0	355	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACCAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	81439213	81431574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ES_00051941	chr7	-	977	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439213	81431929	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ES_00051943	chr7	-	3001	8	FSM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_4	90.4076933695809	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	81479179	81441821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
ES_00051945	chr7	-	1201	2	Intergenic	novelGene_3755	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	136	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAATGGTGTAATAGAAA	NA	False	NA	NA	False	AATAAA	-18	NA	81814528	81761736	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_81762785_81814375
ES_00051946	chr7	-	427	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	3	0	-2	0	multi-exon	FALSE	canonical	3	16	junction_1	0	1584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTGTACCTATCC	NA	False	NA	0	True	AATAAA	-27	NA	82297733	82295375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_82295669_82297599
ES_00051949	chr7	-	2238	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTGGGCTTATGTGCTCC	NA	False	NA	-7	True	AATAAA	-18	NA	83801101	83758563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_83760010_83763458_83763639_83800489
ES_00051950	chr7	-	290	1	FSM	ENSMUSG00000038459.11	ENSMUST00000208271.2	2580	1	2261	29	-1594	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAATGTGTTCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	83798617	83798327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_83798300_83798600
ES_00051952	chr7	-	1585	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	False	NA	-4	True	AATAAA	-32	NA	84255150	84234366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
ES_00051954	chr7	-	2092	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	0	863	0	425	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATTTCTTGATGGAAAA	NA	False	NA	NA	False	TTTAAA	-26	NA	84339165	84263836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ES_00051955	chr7	-	1690	8	FSM	ENSMUSG00000030629.16	ENSMUST00000069537.3	1658	8	0	-32	0	32	multi-exon	FALSE	canonical	3	9	junction_7	283.434475744953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTACTTTTGCCCTGTT	NA	False	NA	NA	False	AATAAA	-45	NA	84328559	84264229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84328517
ES_00051956	chr7	-	1570	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	-32	0	32	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTACTTTTGCCCTGTT	NA	False	NA	NA	False	AATAAA	-45	NA	84328600	84264229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
ES_00051959	chr7	-	289	1	FSM	ENSMUSG00000068629.5	ENSMUST00000173735.2	341	1	204	-152	204	152	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAAACTGAAAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	84483883	84483594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_84483600_84483900
ES_00051963	chr7	-	2224	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	-14	True	AATAAA	-17	NA	89590412	89566736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ES_00051964	chr7	-	1068	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	0	-15	0	0	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590274	89567895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
ES_00051965	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	457.818741425032	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590334	89567895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
ES_00051966	chr7	-	822	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	0	-16	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590407	89567895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
ES_00051967	chr7	-	2539	1	FSM	ENSMUSG00000062797.15	ENSMUST00000207695.2	2539	1	-2	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTGCCTTATGGT	NA	False	NA	NA	False	AATAAA	-13	NA	89590373	89587834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89587800_89590400
ES_00051969	chr7	-	2246	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238981.2	2060	12	0	-186	0	186	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACACTTCCTCCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	89630184	89603675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ES_00051973	chr7	-	408	1	FSM	ENSMUSG00000109038.2	ENSMUST00000208880.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5500	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAGAAAGAAAAGCCAAG	NA	False	NA	NA	False	NA	NA	NA	89614602	89614194	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89614200_89614600
ES_00051975	chr7	-	583	3	FSM	ENSMUSG00000097162.3	ENSMUST00000209164.2	432	3	-151	0	-151	0	multi-exon	FALSE	canonical	3	5	junction_1	1.5	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779343	89774038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89774241_89776135_89776253_89779079
ES_00051976	chr7	-	756	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1666	False	NA	NA	False	AATAAA	-19	NA	90106416	90099907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
ES_00051977	chr7	-	778	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	16	5	-5	-5	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1661	False	NA	NA	False	AATAAA	-14	NA	90106421	90099912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
ES_00051985	chr7	-	9739	15	NIC	ENSMUSG00000041328.17	novel	5995	16	NA	NA	14	-167	intron_retention	FALSE	canonical	3	46	junction_9	58.9210817751255	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTGTATTTCTTGAGT	NA	False	NA	0	True	AATAAA	-18	NA	92319097	92292917	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92308612_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947
ES_00051987	chr7	-	5509	15	ISM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	3883	166	-2514	-166	3prime_fragment	FALSE	canonical	3	109	junction_14	50.802739762211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGTATTTCTTGAGTG	NA	False	NA	1	True	AATAAA	-19	NA	92315259	92292916	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947
ES_00051989	chr7	-	3874	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	46	-88	37	88	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACGCGACTGCTCTCTG	NA	False	NA	NA	False	TTTAAA	-28	NA	92390630	92386756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_92386800_92390600
ES_00051990	chr7	-	3976	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	-587	-2	-587	2	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTTGTTATAATTTTT	NA	False	NA	1	True	AGTAAA	-20	NA	92524042	92506730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
ES_00051991	chr7	-	840	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAAACCTCACTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	92523445	92509356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
ES_00051992	chr7	-	845	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-41	-179	-41	141	mono-exon	FALSE	NA	NA	NA	NA	NA	678	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTCCCCTCCAAAGGC	NA	False	NA	NA	False	NA	NA	NA	92828893	92828048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_92828000_92828900
ES_00051994	chr7	-	1669	1	FSM	ENSMUSG00000108528.2	ENSMUST00000205708.2	641	1	-106	-922	-106	922	mono-exon	FALSE	NA	NA	NA	NA	NA	5374	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGAAAGCCTCAGTACATG	NA	False	NA	NA	False	NA	NA	NA	95852849	95851180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_95851200_95852800
ES_00051998	chr7	-	807	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	-18	0	18	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACAGTTCATGCTTTGGG	NA	False	NA	NA	False	NA	NA	NA	97228704	97199519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
ES_00052000	chr7	-	467	3	FSM	ENSMUSG00000035642.17	ENSMUST00000138060.3	467	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	14	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228689	97199748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97199949_97214357_97214508_97228572
ES_00052002	chr7	-	685	2	Genic_Genomic	ENSMUSG00000108442.2	novel	605	1	NA	NA	0	4638	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTAAATAATGAAGTATG	NA	False	NA	NA	False	NA	NA	NA	97244648	97239405	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_97239424_97243981
ES_00052004	chr7	-	3678	3	FSM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	42	17	42	-17	multi-exon	FALSE	canonical	3	30	junction_1	4.5	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAGTAAAGAAAGAAATTT	NA	False	NA	NA	False	NA	NA	NA	97387454	97373229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97375912_97378177_97378295_97386575
ES_00052006	chr7	-	545	1	FSM	ENSMUSG00000074006.4	ENSMUST00000098281.4	2144	1	1601	-2	1601	2	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGGTGTGGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	97793108	97792563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97792600_97793100
ES_00052008	chr7	-	10130	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	0	1210	0	-1210	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCACCACCAACGGGGAA	NA	False	NA	NA	False	NA	NA	NA	97958745	97856805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ES_00052009	chr7	-	2727	3	FSM	ENSMUSG00000049580.13	ENSMUST00000164726.8	2620	3	-113	6	-73	-6	multi-exon	FALSE	canonical	2	4	junction_2	1.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACTAGCATTTGCTGA	NA	False	NA	-4	True	AATAAA	-24	NA	98010608	97999880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98002338_98008564_98008675_98010448
ES_00052010	chr7	-	7794	20	FSM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	-101	0	-97	0	multi-exon	TRUE	canonical	3	39	junction_14	16.3198636678896	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAATTTTAAAGACTCC	3405	False	NA	NA	False	AATAAA	-26	NA	98306087	98236343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ES_00052011	chr7	-	4452	21	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	19.5153144991312	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAGAAAGAAAAA	3437	False	NA	NA	False	NA	NA	NA	98306055	98239806	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ES_00052018	chr7	-	2262	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831926	98802864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
ES_00052020	chr7	-	1025	1	FSM	ENSMUSG00000109472.2	ENSMUST00000207357.2	1216	1	-193	384	-193	-384	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACGAAGTCTTCAGCGCT	NA	False	NA	NA	False	NA	NA	NA	98898220	98897195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98897200_98898200
ES_00052021	chr7	-	2280	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	-6	0	6	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGATTTATGCAGAGT	NA	False	NA	NA	False	ATTAAA	-36	NA	99002321	98994576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
ES_00052022	chr7	-	2234	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	0	-19	0	6	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGATTTATGCAGAGT	NA	False	NA	NA	False	ATTAAA	-36	NA	99002446	98994576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
ES_00052023	chr7	-	772	2	FSM	ENSMUSG00000070436.13	ENSMUST00000207989.2	592	2	-180	0	-31	0	multi-exon	FALSE	canonical	3	88	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTCAGCAACTCCACTGC	NA	False	NA	NA	False	GGGGCT	-17	NA	99002477	98998283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98998672_99002093
ES_00052025	chr7	-	860	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	46272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5406.63746647374	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAGAAACTAAGAGCCAA	8423	False	NA	NA	False	NA	NA	NA	99132857	99080830	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99080857_99128088_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ES_00052026	chr7	-	1926	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	0	-18	0	18	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	6917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACATCTGAGGTTTCTA	8335	False	NA	6	True	ATTAAA	-19	NA	99132945	99127084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ES_00052028	chr7	-	2770	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	26	113	26	-113	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGGGTTTGTACTTGTT	NA	False	NA	NA	False	AATATA	-7	NA	99508158	99486888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ES_00052030	chr7	-	1611	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	0	-1	0	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	-2	True	AATAAA	-19	NA	99508118	99488109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
ES_00052031	chr7	-	7150	6	FSM	ENSMUSG00000058761.6	ENSMUST00000080817.6	7147	6	0	-3	0	3	multi-exon	FALSE	canonical	3	16	junction_4	4.83321838943783	1653	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTTCTGATCAGTCTGG	NA	False	NA	2	True	AGTAAA	-23	NA	99629655	99569457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99575691_99576299_99576400_99584368_99584488_99592165_99592313_99604673_99604748_99629178
ES_00052032	chr7	-	3072	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	0	-3	0	3	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	2088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCGAGTTGGAGTTGT	NA	False	NA	-1	True	AATAAA	-21	NA	99770772	99731314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ES_00052033	chr7	-	2279	3	FSM	ENSMUSG00000030726.17	ENSMUST00000156518.2	658	3	-67	-1554	-67	3	multi-exon	FALSE	canonical	3	571	junction_1	15	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCGAGTTGGAGTTGT	NA	False	NA	-1	True	AATAAA	-21	NA	99739311	99731314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99733062_99737270_99737350_99738858
ES_00052035	chr7	-	2423	15	NNC	ENSMUSG00000030718.10	novel	2772	14	NA	NA	0	14193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.746137591485	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTACTTCTCTGCATG	NA	False	NA	NA	False	NA	NA	NA	100021141	99961750	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99961777_99975945_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004008_100004473_100004569_100020929
ES_00052036	chr7	-	2563	14	FSM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	207	2	-166	-2	multi-exon	FALSE	canonical	0	0	junction_12	101.852195962999	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTCTGAGGAGCTGTC	NA	False	NA	-10	True	AATAAA	-15	NA	100021307	99975945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
ES_00052037	chr7	-	4091	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	194	0	-189	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGGCGCTTGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	100232309	100195151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ES_00052040	chr7	-	695	1	FSM	ENSMUSG00000030706.18	ENSMUST00000208916.2	2144	1	1379	70	1379	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	2908	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGGCCTTCATGGGAA	NA	False	NA	NA	False	NA	NA	NA	100230903	100230208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100230200_100230900
ES_00052041	chr7	-	1807	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	0	-1	0	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGGCTTTGCTTGTTTT	NA	False	NA	-1	True	AATAAA	-17	NA	100307663	100293105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
ES_00052043	chr7	-	1275	1	FSM	ENSMUSG00000097388.2	ENSMUST00000181493.2	1002	1	-76	-197	-76	197	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTTACAGGGGCTGGAG	NA	False	NA	NA	False	AATAAA	-31	NA	100411089	100409814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100409800_100411100
ES_00052044	chr7	-	2836	11	FSM	ENSMUSG00000008318.11	ENSMUST00000008462.11	2851	11	11	4	11	-4	multi-exon	FALSE	canonical	3	27	junction_8	6.09590026165127	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGAACGAGCTTTTTTT	2169	False	NA	NA	False	NA	NA	NA	100512642	100495057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
ES_00052045	chr7	-	374	5	FSM	ENSMUSG00000008318.11	ENSMUST00000136231.2	516	5	142	0	142	0	multi-exon	FALSE	canonical	2	4	junction_4	16.4069345095298	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCTCCAAGTACTGGTG	2588	False	NA	NA	False	NA	NA	NA	100512223	100500328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512212
ES_00052046	chr7	-	2115	5	ISM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	16539	-3	1557	3	3prime_fragment	FALSE	canonical	3	12	junction_4	4.03112887414927	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCTCCCCCGGGCCTT	6112	False	NA	-10	True	AATAAA	-14	NA	100527358	100521338	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302
ES_00052050	chr7	-	411	1	FSM	ENSMUSG00000083121.4	ENSMUST00000119683.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	100804262	100803851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100803900_100804300
ES_00052057	chr7	-	4747	29	FSM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	0	-17	0	10	multi-exon	FALSE	canonical	3	95	junction_28	22.1558429663829	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCGACGGCTCTTCCCC	NA	False	NA	9	True	AATAAA	-26	NA	101487010	101471828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486927
ES_00052058	chr7	-	5005	29	FSM	ENSMUSG00000032737.14	ENSMUST00000035836.14	4995	29	0	-10	0	10	multi-exon	FALSE	canonical	3	20	junction_28	32.2947996066341	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCGACGGCTCTTCCCC	NA	False	NA	9	True	AATAAA	-26	NA	101487436	101471828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101487095
ES_00052059	chr7	-	2580	13	FSM	ENSMUSG00000032737.14	ENSMUST00000186316.2	2559	13	0	-21	0	0	multi-exon	FALSE	canonical	3	9	junction_1	49.0245828357797	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCCGTTCCCCGACG	NA	False	NA	-1	True	AATAAA	-43	NA	101478473	101471838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101472611_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360
ES_00052060	chr7	-	5715	29	NNC	ENSMUSG00000032737.14	novel	4995	29	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_28	28.1340631655664	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAGGAAAAGGAAAACC	NA	False	NA	-22	True	AATAAA	-22	NA	101487448	101471859	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486366
ES_00052062	chr7	-	963	4	FSM	ENSMUSG00000001827.13	ENSMUST00000106981.8	960	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	303	junction_2	18.9267594221045	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	8095	False	NA	0	True	AATAAA	-31	NA	101513355	101507537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131
ES_00052063	chr7	-	1114	5	NNC	ENSMUSG00000001827.13	novel	1039	5	NA	NA	616	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	138.956827827926	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	5452	False	NA	0	True	AATAAA	-31	NA	101515998	101507537	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101515793
ES_00052064	chr7	-	1033	5	FSM	ENSMUSG00000001827.13	ENSMUST00000106982.8	1039	5	6	0	6	0	multi-exon	FALSE	canonical	3	16	junction_4	136.80711787038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	4842	False	NA	0	True	AATAAA	-31	NA	101516608	101507537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101516484
ES_00052065	chr7	-	1529	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1666	0	1	0	3prime_fragment	FALSE	canonical	3	257	junction_4	35.4788669492136	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3226	False	NA	0	True	AATAAA	-31	NA	101518224	101507537	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
ES_00052067	chr7	-	1357	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	1240	14	3	-14	3prime_fragment	FALSE	canonical	3	52	junction_5	108.542341968469	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTATGAATTATTTGGG	2695	False	NA	-14	True	AATAAA	-17	NA	101518755	101507551	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363
ES_00052068	chr7	-	1426	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1164	0	32	0	3prime_fragment	FALSE	canonical	3	40	junction_5	113.141327550988	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2724	False	NA	0	True	AATAAA	-31	NA	101518726	101507537	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363
ES_00052074	chr7	-	596	4	FSM	ENSMUSG00000070427.5	ENSMUST00000209368.2	2596	4	1272	728	737	81	multi-exon	FALSE	canonical	3	5	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGGAACCTGAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	101666625	101665249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101665398_101665484_101665609_101665956_101666149_101666493
ES_00052076	chr7	-	2359	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	-15	0	0	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714676	101668343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
ES_00052079	chr7	-	6692	33	FSM	ENSMUSG00000063550.9	ENSMUST00000210682.2	6694	33	0	2	0	-2	multi-exon	FALSE	canonical	3	19	junction_23	43.7886324967736	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTGGTATTGACTTT	9970	False	NA	-8	True	AATAAA	-18	NA	101859383	101768606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ES_00052080	chr7	-	4030	23	NIC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	14	17	combination_of_known_junctions	FALSE	canonical	3	26	junction_22	30.1171610287184	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATTCTAAATTTACTAAT	9993	False	NA	12	True	AATAAA	-32	NA	101859060	101783392	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
ES_00052081	chr7	-	3878	22	NIC	ENSMUSG00000063550.9	novel	4052	23	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	29.4626093799229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATCTCAGGAAAATCC	9980	False	NA	-5	True	AATAAA	-15	NA	101859345	101783409	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ES_00052083	chr7	-	3966	20	FSM	ENSMUSG00000063550.9	ENSMUST00000211005.2	3961	20	0	-5	0	5	multi-exon	FALSE	canonical	3	19	junction_10	42.7705985429593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTATGTTAATGTTTT	9979	False	NA	NA	False	ATTAAA	-31	NA	101859074	101793747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
ES_00052084	chr7	-	3132	20	FSM	ENSMUSG00000063550.9	ENSMUST00000211022.2	3132	20	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_10	14.8011753669689	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATGATGTGCAGTCT	9996	False	NA	NA	False	AGTAAA	-14	NA	101859357	101794534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ES_00052086	chr7	-	495	1	FSM	ENSMUSG00000109822.2	ENSMUST00000210437.2	664	1	52	117	52	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAAGAGGAGGGAGAGGA	NA	False	NA	NA	False	AAAAAG	-41	NA	102170164	102169669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_102169700_102170200
ES_00052087	chr7	-	2791	8	FSM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	0	2	0	-1	multi-exon	FALSE	canonical	3	11	junction_3	2.61861468283191	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGCTTCTTTCATTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	102214693	102207129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478_102213548_102214595
ES_00052089	chr7	-	2360	7	FSM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	25	3	25	-3	multi-exon	FALSE	canonical	2	5	junction_6	1.21335164821342	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACAGATCACGAGTCTGC	NA	False	NA	NA	False	ATTAAA	-25	NA	102336509	102326791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254_102333719_102336347
ES_00052092	chr7	-	512	2	Antisense	novelGene_ENSMUSG00000072244.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1180	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAACAAAAATAAA	230	False	NA	NA	False	NA	NA	NA	103882883	103882326	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_103882694_103882738
ES_00052093	chr7	-	1905	3	NNC	ENSMUSG00000057143.16	novel	3740	8	NA	NA	-74744	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGTCCAACCTTTTCTT	NA	False	NA	-1	True	AATAAA	-15	NA	104077313	103987960	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_103989001_103989054_103989809_104077202
ES_00052094	chr7	-	1458	1	FSM	ENSMUSG00000082154.2	ENSMUST00000117815.2	1095	1	432	-795	432	795	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGCTATTCACGTTGTTC	NA	False	NA	NA	False	TTTAAA	-23	NA	104150924	104149466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_104149500_104150900
ES_00052095	chr7	-	226	1	FSM	ENSMUSG00000109821.2	ENSMUST00000211165.2	1135	1	383	526	383	-526	mono-exon	FALSE	NA	NA	NA	NA	NA	2071	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGGACTGGGGACAAAGA	NA	False	NA	NA	False	TTTAAA	-39	NA	104342256	104342030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_104342000_104342300
ES_00052096	chr7	-	1316	1	FSM	ENSMUSG00000094685.3	ENSMUST00000179862.3	375	1	-191	-750	-191	750	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAGGGAAAAAGGTCAAG	NA	False	NA	NA	False	AATAAA	-30	NA	104599687	104598371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_104598400_104599700
ES_00052097	chr7	-	10856	12	FSM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	0	-3	0	3	multi-exon	TRUE	canonical	3	88	junction_4	97.1164419950871	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGTTCACATCTCAGTTA	NA	False	NA	3	True	AATAAA	-19	NA	105049261	105020414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ES_00052099	chr7	-	3444	12	FSM	ENSMUSG00000044465.20	ENSMUST00000048079.14	3443	12	0	-1	0	0	multi-exon	FALSE	canonical	3	83	junction_4	97.8877751760945	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049209	105027816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ES_00052102	chr7	-	1447	2	FSM	ENSMUSG00000037060.4	ENSMUST00000047040.4	1662	2	16	199	16	-199	multi-exon	FALSE	canonical	3	8	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCTTGGTCTACTTTC	NA	False	NA	NA	False	NA	NA	NA	105131491	105129488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105130427_105130982
ES_00052103	chr7	-	2674	14	FSM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	225	-21	12	1	multi-exon	FALSE	canonical	3	117	junction_6	14.1718113410527	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTCCTGTGCTCATG	NA	False	NA	-21	True	AATAAA	-18	NA	105230473	105207688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
ES_00052106	chr7	-	2837	12	FSM	ENSMUSG00000036989.17	ENSMUST00000057525.14	3016	12	0	179	0	-1	multi-exon	FALSE	canonical	3	8	junction_11	13.9497326613206	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGCTAGGTTCTTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	105282767	105259855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282609
ES_00052111	chr7	-	2254	8	FSM	ENSMUSG00000030881.16	ENSMUST00000084782.10	2254	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	43.718953999101	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTAAGTAGCGAACAGC	NA	False	NA	NA	False	NA	NA	NA	105289558	105284325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288633_105289451
ES_00052113	chr7	-	1940	8	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	1	-4	intron_retention	FALSE	canonical	3	37	junction_3	33.0787557449287	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGGCCCAGTGAGGT	NA	False	NA	NA	False	AATAAA	-9	NA	105289546	105284834	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ES_00052115	chr7	-	309	1	FSM	ENSMUSG00000081911.2	ENSMUST00000118658.2	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTCGTGGCTGCTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	105339774	105339465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105339500_105339800
ES_00052116	chr7	-	3002	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	-13	64	-13	-64	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCGGGATTTTGAACCAGT	9790	False	NA	NA	False	NA	NA	NA	105386001	105381000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
ES_00052117	chr7	-	4281	5	FSM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_4	81.1861287413065	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATCCCCTAAGGACAT	6439	False	NA	-12	True	AATAAA	-20	NA	105393568	105388599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036_105393192_105393293
ES_00052118	chr7	-	3558	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401442	105394017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ES_00052119	chr7	-	683	5	FSM	ENSMUSG00000030894.6	ENSMUST00000210018.2	723	5	40	0	40	0	multi-exon	FALSE	canonical	3	326	junction_4	8.20060973342836	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGAGTATTGGAGGAAA	1708	False	NA	NA	False	NA	NA	NA	105398299	105396152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089
ES_00052121	chr7	-	7294	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	0	6	0	-6	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGCTACTTCCTGTGA	NA	False	NA	NA	False	ATTAAA	-33	NA	105460306	105452418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105459352_105459656_105459726_105460014
ES_00052123	chr7	-	657	2	Intergenic	novelGene_3791	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	0	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAGTGTTATCATCCTG	NA	False	NA	NA	False	TTTAAA	-17	NA	106838128	106836769	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_106837208_106837909
ES_00052124	chr7	-	2260	9	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	3	190	intron_retention	FALSE	canonical	3	29	junction_7	8.01171017948103	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTTGAAGGACAAACTCA	NA	False	NA	NA	False	NA	NA	NA	107357200	107348981	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
ES_00052125	chr7	-	1178	9	FSM	ENSMUSG00000048065.9	ENSMUST00000208217.2	1178	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	13.026415470113	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357203	107349171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
ES_00052126	chr7	-	1398	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-91	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	11.9484489411289	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357330	107349171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
ES_00052127	chr7	-	1461	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-122	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357361	107349171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
ES_00052128	chr7	-	1066	1	FSM	ENSMUSG00000108892.2	ENSMUST00000207265.2	1011	1	-61	6	-61	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGCCTCTCAGGAAAATC	NA	False	NA	NA	False	NA	NA	NA	107551624	107550558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_107550600_107551600
ES_00052129	chr7	-	1390	1	FSM	ENSMUSG00000109484.2	ENSMUST00000207291.2	357	1	-94	-939	-94	939	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAATAATAGCAATTACC	NA	False	NA	NA	False	AATAAA	-36	NA	107693786	107692396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_107692400_107693800
ES_00052130	chr7	-	5016	5	FSM	ENSMUSG00000048330.15	ENSMUST00000147580.8	5016	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	25.7827461687075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATTCAAAAAGTCACTT	NA	False	NA	NA	False	AATAAA	-30	NA	108657031	108633518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108656113_108656989
ES_00052131	chr7	-	5275	6	FSM	ENSMUSG00000048330.15	ENSMUST00000055993.13	5281	6	6	0	-3	0	multi-exon	FALSE	canonical	3	56	junction_4	4.1182520563948	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATTCAAAAAGTCACTT	NA	False	NA	NA	False	AATAAA	-30	NA	108682532	108633518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ES_00052132	chr7	-	2620	6	FSM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	17	-1004	0	1004	multi-exon	FALSE	canonical	3	26	junction_2	14.7837748900611	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCCCAACTAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	108682512	108636150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_108638091_108647157_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ES_00052133	chr7	-	3197	5	FSM	ENSMUSG00000048330.15	ENSMUST00000133876.2	3258	5	0	61	0	-61	multi-exon	FALSE	canonical	3	56	junction_3	4.55521678957215	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAATTCCTCCACACCT	NA	False	NA	NA	False	NA	NA	NA	108682518	108644649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ES_00052135	chr7	-	4448	20	FSM	ENSMUSG00000031024.14	ENSMUST00000077909.9	4612	20	164	0	-36	0	multi-exon	FALSE	canonical	3	89	junction_19	35.017605386157	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109215796	109123126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109215504
ES_00052138	chr7	-	4252	20	FSM	ENSMUSG00000031024.14	ENSMUST00000079282.8	4255	20	0	3	0	-3	multi-exon	TRUE	canonical	3	111	junction_19	31.6037621800557	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTATTGTGTTCCTTT	NA	False	NA	-1	True	AATAAA	-23	NA	109216354	109123120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264
ES_00052139	chr7	-	4324	21	NIC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	-6	4	combination_of_known_junctions	FALSE	canonical	3	65	junction_20	42.4156810625504	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTCTTATTGTGTTCCT	NA	False	NA	-3	True	AATAAA	-21	NA	109302818	109123122	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264_109216355_109302744
ES_00052145	chr7	-	3905	7	FSM	ENSMUSG00000034825.15	ENSMUST00000033331.7	3910	7	3	2	1	-2	multi-exon	FALSE	canonical	2	8	junction_6	3.54338193757822	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTTGTCTGAGTC	NA	False	NA	-7	True	AATAAA	-13	NA	109380749	109357267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109360397_109360853_109360949_109361027_109361081_109362690_109362831_109364672_109364756_109365679_109365842_109380506
ES_00052149	chr7	-	5004	23	FSM	ENSMUSG00000035901.15	ENSMUST00000080437.13	5004	23	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_12	18.0282148014056	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACTGGTCACTGGCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	109559677	109492986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109494023_109495449_109495619_109496153_109496278_109497110_109497194_109497714_109497897_109498250_109498370_109498930_109499077_109500266_109500389_109504376_109504506_109504902_109504988_109507537_109507623_109511121_109511275_109513927_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468_109518685_109520400_109520719_109526033_109526222_109532819_109533478_109533899_109534010_109534688_109534761_109559280
ES_00052150	chr7	-	4611	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	-973	0	973	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTTGTGTTGTGGCTT	NA	False	NA	-1	True	AATAAA	-18	NA	109585456	109570420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ES_00052151	chr7	-	3798	3	FSM	ENSMUSG00000047554.15	ENSMUST00000125703.2	839	3	-606	-2353	-606	68	multi-exon	FALSE	canonical	3	393	junction_1	12.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCAAAATGGAAGCAACC	NA	False	NA	NA	False	NA	NA	NA	109578742	109571325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109574159_109575801_109575941_109577916
ES_00052153	chr7	-	569	3	FSM	ENSMUSG00000101585.7	ENSMUST00000191157.7	617	3	18	30	3	-2	multi-exon	FALSE	canonical	0	0	junction_1	0.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCTTGGCCTCCATT	3392	False	NA	NA	False	NA	NA	NA	109605835	109597612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109597981_109602792_109602923_109605764
ES_00052155	chr7	-	7071	40	NIC	ENSMUSG00000038371.16	novel	7090	40	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	22	junction_39	19.8558248483317	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGAGTGCTGTGATGT	NA	False	NA	NA	False	ATTAAA	-21	NA	110214112	109907218	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159551_110213913
ES_00052156	chr7	-	4021	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	11	0	-2	0	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTAGGTGTTGGGAGTTT	NA	False	NA	0	True	ATTAAA	-22	NA	110443653	110412737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
ES_00052158	chr7	-	5236	24	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	0	11015	intron_retention	FALSE	non_canonical	0	0	junction_1	2009.69316940688	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATAGCTGGGCTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	110682226	110655941	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_110655986_110669935_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681629_110681817_110681991
ES_00052160	chr7	-	7761	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	0	234	0	-234	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTATGGTCCTGAGCTTT	NA	False	NA	NA	False	NA	NA	NA	110682237	110667190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ES_00052171	chr7	-	2590	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	0	-9	0	9	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTAGATTCTGTGTCATA	NA	False	NA	10	True	AATAAA	-43	NA	112968546	112914823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
ES_00052172	chr7	-	2415	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	0	-21	0	4	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGGCTAGATTCTGTG	NA	False	NA	5	True	AATAAA	-38	NA	112968599	112914828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
ES_00052173	chr7	-	2480	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGGCTAGATTCTGTG	NA	False	NA	5	True	AATAAA	-38	NA	112968599	112914828	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
ES_00052175	chr7	-	3348	23	NNC	ENSMUSG00000030754.10	novel	3346	22	NA	NA	0	23179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.611182410083	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGGGGTGGGCTTTATC	NA	False	NA	NA	False	NA	NA	NA	113853926	113791614	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_113791641_113814797_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
ES_00052176	chr7	-	1167	11	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	0	72226	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1114.37310179311	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGGGGTGGGCTTTATC	NA	False	NA	NA	False	NA	NA	NA	113875278	113791614	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_113791640_113863843_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869658_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ES_00052178	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_6	196.061655709387	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875353	113863840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ES_00052179	chr7	-	960	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	875.758056108824	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	False	NA	NA	False	TTTAAA	-39	NA	113875261	113864029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
ES_00052180	chr7	-	959	5	FSM	ENSMUSG00000030751.19	ENSMUST00000154909.2	959	5	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_1	245.338923736125	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113875289	113869723	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ES_00052181	chr7	-	991	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	3	0	3	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2037	False	NA	0	True	ATTAAA	-27	NA	114235589	114230712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
ES_00052182	chr7	-	1163	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	5	-338	0	338	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATGGGCATGGTTG	2084	False	NA	NA	False	TATAAA	-15	NA	114235542	114232189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
ES_00052185	chr7	-	514	1	FSM	ENSMUSG00000046411.3	ENSMUST00000059737.3	768	1	283	-29	283	29	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGTTTACATTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	114526678	114526164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_114526200_114526700
ES_00052186	chr7	-	1515	1	Genic_Genomic	ENSMUSG00000091900.4	novel	NA	NA	NA	NA	-60	263	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAATGATTGAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	115683853	115682338	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_115682300_115683900
ES_00052187	chr7	-	5155	27	FSM	ENSMUSG00000045659.19	ENSMUST00000181998.8	5149	27	0	-6	0	-2	multi-exon	FALSE	canonical	3	186	junction_4	26.6807778245958	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGCTCTTGCTGGCTGT	NA	False	NA	0	True	ATTAAA	-19	NA	115907611	115722721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115724056_115727788_115727929_115728626_115728761_115731855_115732012_115734273_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
ES_00052193	chr7	-	583	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	0	6	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGTGTTTTGTGGTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	115933430	115930745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ES_00052194	chr7	-	653	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933365	115930746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
ES_00052195	chr7	-	2363	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933370	115930746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115933010_115933134_115933184_115933319
ES_00052196	chr7	-	1150	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933401	115930746	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
ES_00052198	chr7	-	8011	34	NNC	ENSMUSG00000030660.10	novel	8044	33	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_1	16.220586857957	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCATTTCCTTCC	NA	False	NA	NA	False	AATAAA	-5	NA	116042674	115936499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_115938228_115938250_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116042538
ES_00052201	chr7	-	1342	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCTTGCCAGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	116425086	116423744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_116423700_116425100
ES_00052202	chr7	-	5132	4	FSM	ENSMUSG00000008683.17	ENSMUST00000172457.8	5130	4	0	-2	0	2	multi-exon	FALSE	canonical	3	8104	junction_2	1380.96640879575	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTTGTCTGAATGGCT	NA	False	NA	NA	False	AATAAA	-19	NA	117714479	117703598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331
ES_00052203	chr7	-	5175	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	0	4	0	2	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	4460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTTGTCTGAATGGCT	NA	False	NA	NA	False	AATAAA	-19	NA	117715411	117703598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
ES_00052208	chr7	-	15543	63	FSM	ENSMUSG00000030655.16	ENSMUST00000032891.15	15557	63	14	0	0	0	multi-exon	TRUE	canonical	3	32	junction_39	26.3486045060696	2913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTATCTAAGCTCTGAATT	NA	False	NA	-4	True	AATAAA	-29	NA	117842846	117730530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942_117741096_117742480_117742616_117744553_117745024_117745190_117745381_117745473_117745625_117747956_117748184_117751500_117751736_117751899_117752173_117753394_117753675_117753800_117753974_117755148_117755340_117755739_117755959_117756082_117756193_117756277_117756417_117757216_117757466_117758813_117759044_117759384_117759632_117762374_117762598_117765192_117765348_117765586_117765805_117766344_117766507_117767035_117767214_117767316_117767548_117767830_117767970_117768080_117768226_117770908_117771194_117772276_117772526_117776060_117776182_117777587_117777748_117777975_117778124_117779594_117779705_117781596_117781799_117781966_117782110_117782961_117783117_117783695_117783861_117784049_117784247_117784589_117784790_117785256_117785398_117788293_117788396_117788481_117788570_117789005_117789125_117789711_117789874_117790007_117790139_117792672_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023_117806238_117807245_117807305_117809961_117810099_117811642_117811799_117812111_117812276_117842427
ES_00052210	chr7	-	6698	1	FSM	ENSMUSG00000095115.3	ENSMUST00000178344.3	6865	1	155	12	155	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGTGGAAACCTCTGGA	NA	False	NA	NA	False	AATAAA	-3	NA	118091043	118084345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118084300_118091000
ES_00052212	chr7	-	2353	2	FSM	ENSMUSG00000030652.12	ENSMUST00000127700.2	3070	2	0	717	0	-717	multi-exon	FALSE	canonical	3	1040	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGCAGCCTGTGGCTTG	6667	False	NA	NA	False	NA	NA	NA	118132537	118126743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118128961_118132401
ES_00052213	chr7	-	4477	17	NNC	ENSMUSG00000042246.6	novel	4546	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	2	106	junction_9	15.9813123287795	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGGGTGCGTGTTGTG	4194	False	NA	0	True	AATAAA	-20	NA	118183909	118135061	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_118136779_118136799_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
ES_00052214	chr7	-	4548	16	FSM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	0	-2	0	2	multi-exon	FALSE	canonical	3	106	junction_8	12.8571640211466	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGGGTGCGTGTTGTG	4144	False	NA	0	True	AATAAA	-20	NA	118183959	118135061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
ES_00052215	chr7	-	1583	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	0	-1	0	1	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTACTGATCTTCTGGTC	NA	False	NA	4	True	AATAAA	-29	NA	118305001	118287766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
ES_00052216	chr7	-	5168	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	214	0	-100	0	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	NA	False	NA	-17	True	AATAAA	-16	NA	118455007	118441444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
ES_00052217	chr7	-	5006	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	NA	False	NA	-17	True	AATAAA	-16	NA	118454893	118441444	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
ES_00052218	chr7	-	4523	4	FSM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	0	-5	0	5	multi-exon	FALSE	canonical	3	70	junction_1	4.64279609239471	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTGGTAGCTTGTCAG	NA	False	NA	2	True	AATAAA	-20	NA	118594434	118571264	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118574427_118575735_118575894_118582837_118583869_118594262
ES_00052219	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
ES_00052221	chr7	-	7076	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	91	-3603	0	2345	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAGCTTCTAGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	119393190	119379450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ES_00052223	chr7	-	711	3	FSM	ENSMUSG00000048787.14	ENSMUST00000142120.2	630	3	-81	0	-81	0	multi-exon	FALSE	canonical	3	12	junction_2	52.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTAGCCTCTTAACAGA	NA	False	NA	NA	False	NA	NA	NA	119461136	119457215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119457280_119458602_119459139_119461025
ES_00052224	chr7	-	996	1	FSM	ENSMUSG00000048787.14	ENSMUST00000207488.2	1955	1	51	908	44	-908	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGCCGTGAGGTAGGA	NA	False	NA	NA	False	NA	NA	NA	119495470	119494474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119494500_119495500
ES_00052230	chr7	-	4913	17	FSM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	2	0	2	0	multi-exon	FALSE	canonical	3	748	junction_16	35.03391214238	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGTGTCACTGTTTTG	NA	False	NA	-5	True	AATAAA	-14	NA	121620443	121585944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
ES_00052232	chr7	-	8072	8	FSM	ENSMUSG00000030871.12	ENSMUST00000147397.2	3222	8	-193	-4657	0	3049	multi-exon	FALSE	canonical	3	137	junction_2	8.41281820819169	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTCAGACCAGTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	121666486	121633386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121647798_121654781_121654972_121662151_121662308_121666127
ES_00052233	chr7	-	2046	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666486	121638043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
ES_00052234	chr7	-	3479	5	FSM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	2248.42489311963	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTCCTAACATGCATCA	6358	False	NA	NA	False	AATAAA	-37	NA	121701109	121684625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ES_00052235	chr7	-	1406	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	0	10	0	-10	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	1341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGACAGATTTTGTTTG	6393	False	NA	NA	False	AATAAA	-3	NA	121701074	121689288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ES_00052237	chr7	-	2559	13	FSM	ENSMUSG00000044702.14	ENSMUST00000106469.8	2559	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	41.4242950721219	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732067	121706484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121727360_121727667_121728145_121728240_121728896_121728957_121731942
ES_00052238	chr7	-	3750	13	FSM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_9	28.0835806121655	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732169	121706484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
ES_00052239	chr7	-	1951	12	NIC	ENSMUSG00000044702.14	novel	2559	13	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	40.7258522479556	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732130	121706484	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
ES_00052240	chr7	-	1589	11	NIC	ENSMUSG00000044702.14	novel	3304	12	NA	NA	15	-8	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	54.3301021534103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGAACGATTGCTTGTC	NA	False	NA	NA	False	AATAAA	-8	NA	121732193	121710802	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
ES_00052243	chr7	-	685	1	FSM	ENSMUSG00000108452.2	ENSMUST00000205998.2	993	1	-497	805	-497	-805	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGCCGATAGGCGGGCCG	NA	False	NA	NA	False	GGGGCT	-6	NA	122569770	122569085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122569100_122569800
ES_00052244	chr7	-	3381	21	NIC	ENSMUSG00000030766.16	novel	3336	20	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	48.4230317101274	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969105	122878493	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ES_00052245	chr7	-	3337	20	FSM	ENSMUSG00000030766.16	ENSMUST00000106442.9	3336	20	0	-1	0	1	multi-exon	FALSE	canonical	0	0	junction_19	53.0955862029814	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTAATTCTTAGAGGCAA	NA	False	NA	0	True	ATTAAA	-26	NA	122969109	122878492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ES_00052246	chr7	-	3036	20	FSM	ENSMUSG00000030766.16	ENSMUST00000205262.2	3036	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	60.4560690757234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAACAAAACA	NA	False	NA	NA	False	AATATA	-10	NA	122969108	122878607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ES_00052247	chr7	-	3305	1	FSM	ENSMUSG00000030766.16	ENSMUST00000206803.2	3305	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATCAAAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	122885464	122882159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122882200_122885500
ES_00052248	chr7	-	3025	15	FSM	ENSMUSG00000030766.16	ENSMUST00000206294.2	3658	15	0	633	0	-633	multi-exon	FALSE	canonical	0	0	junction_14	55.1393873815835	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGGCACTTTATGAGAT	NA	False	NA	NA	False	TTTAAA	-31	NA	122969138	122895134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ES_00052252	chr7	-	1039	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	81	0	81	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090687	125066811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ES_00052254	chr7	-	6959	37	FSM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	2	0	2	0	multi-exon	FALSE	canonical	3	171	junction_34	23.9112782676933	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTGTATTGGCCTAATG	NA	False	NA	1	True	ATTAAA	-16	NA	125306950	125240125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
ES_00052255	chr7	-	5036	21	FSM	ENSMUSG00000000131.16	ENSMUST00000170675.8	5028	21	0	-8	0	2	multi-exon	FALSE	canonical	2	5	junction_18	158.020916337047	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGGGGCATCTTTGTAC	NA	False	NA	NA	False	AATAAA	-30	NA	125760043	125700884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728813_125730197_125730307_125739736_125739847_125748405_125748533_125748675_125748710_125750395_125752452_125755895_125755974_125760032
ES_00052256	chr7	-	4458	24	FSM	ENSMUSG00000000131.16	ENSMUST00000009344.16	4455	24	0	-3	0	2	multi-exon	TRUE	canonical	3	58	junction_14	102.701045398272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGGGGCATCTTTGTAC	NA	False	NA	NA	False	AATAAA	-30	NA	125799580	125700884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728810_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
ES_00052257	chr7	-	4554	24	FSM	ENSMUSG00000000131.16	ENSMUST00000168189.8	4552	24	0	-2	0	2	multi-exon	FALSE	canonical	3	436	junction_21	38.8223134638356	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGGGGCATCTTTGTAC	NA	False	NA	NA	False	AATAAA	-30	NA	125799673	125700884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728813_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
ES_00052262	chr7	-	1305	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	-70	0	-34	0	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968776	125962998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
ES_00052264	chr7	-	2219	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	1313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGTCTCTCTGT	NA	False	NA	1	True	AATAAA	-21	NA	125976622	125969231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
ES_00052268	chr7	-	3370	10	FSM	ENSMUSG00000030733.11	ENSMUST00000205340.2	3366	10	0	-4	0	1	multi-exon	FALSE	canonical	3	29	junction_9	82.2103595046059	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	8177	False	NA	0	True	AATAAA	-29	NA	126074302	126066164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
ES_00052270	chr7	-	4465	10	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	2	2	2	0	intron_retention	FALSE	canonical	3	19	junction_9	85.0607625955313	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCTGTGGCTGATATT	8219	False	NA	-3	True	AATAAA	-26	NA	126074260	126066167	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126072650
ES_00052272	chr7	-	4894	9	ISM	ENSMUSG00000030733.11	ENSMUST00000032978.8	3393	10	18	5	5	-2	intron_retention	FALSE	canonical	3	53	junction_2	78.2606821782177	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGATGGCTGTGGCTG	8222	False	NA	-8	True	AATAAA	-21	NA	126074257	126066172	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244
ES_00052273	chr7	-	3019	10	NIC	ENSMUSG00000030733.11	novel	3393	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	53	junction_2	75.3988571154828	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	8204	False	NA	0	True	AATAAA	-29	NA	126074275	126066164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
ES_00052276	chr7	-	4031	22	NNC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	14	0	intron_retention	FALSE	canonical	3	30	junction_21	220.244051399512	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	7256	False	NA	0	True	NA	NA	NA	126101258	126090879	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101120
ES_00052277	chr7	-	3605	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	143	junction_23	266.578786716817	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	7242	False	NA	0	True	NA	NA	NA	126101272	126090879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
ES_00052278	chr7	-	4041	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	143	junction_21	199.099617268271	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	7242	False	NA	0	True	NA	NA	NA	126101272	126090879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
ES_00052279	chr7	-	4032	22	FSM	ENSMUSG00000032637.16	ENSMUST00000167759.8	4023	22	0	-9	0	2	multi-exon	FALSE	canonical	3	137	junction_12	243.863600773697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGGGTTTGATTCTT	6928	False	NA	2	True	NA	NA	NA	126101586	126090877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
ES_00052280	chr7	-	3576	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	256.034939723406	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	6928	False	NA	0	True	NA	NA	NA	126101586	126090879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
ES_00052282	chr7	-	4012	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	238	junction_21	181.885750689423	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	6928	False	NA	0	True	NA	NA	NA	126101586	126090879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
ES_00052283	chr7	-	4444	22	NIC	ENSMUSG00000032637.16	novel	3853	23	NA	NA	0	2	intron_retention	FALSE	canonical	3	137	junction_12	233.379208318315	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	9414	False	NA	-5	True	NA	NA	NA	126102609	126090884	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00052284	chr7	-	3874	24	NIC	ENSMUSG00000032637.16	novel	3853	23	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	67	junction_2	267.820172153773	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGGGTTTGATTCTT	9414	False	NA	2	True	NA	NA	NA	126102609	126090877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126091388_126091620_126091658_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00052285	chr7	-	4433	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	0	2	intron_retention	FALSE	canonical	3	324	junction_21	166.887513543916	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGGGTTTGATTCTT	9414	False	NA	2	True	NA	NA	NA	126102609	126090877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00052286	chr7	-	4008	24	NIC	ENSMUSG00000032637.16	novel	3853	23	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	137	junction_14	287.428781349095	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	9414	False	NA	-5	True	NA	NA	NA	126102609	126090884	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00052287	chr7	-	3855	23	FSM	ENSMUSG00000032637.16	ENSMUST00000040202.15	3853	23	0	-2	0	2	multi-exon	FALSE	canonical	3	129	junction_1	278.170751413855	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGGGTTTGATTCTT	9414	False	NA	2	True	NA	NA	NA	126102609	126090877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126091388_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00052290	chr7	-	3026	22	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-56	27406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	592.788238489606	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCAGGCATTATAGC	NA	False	NA	NA	False	NA	NA	NA	126165639	126118220	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126118264_126146082_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
ES_00052291	chr7	-	3393	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	-10	0	10	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAAGGTTATGGCACTC	NA	False	NA	NA	False	NA	NA	NA	126165583	126145616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
ES_00052292	chr7	-	926	7	FSM	ENSMUSG00000030738.12	ENSMUST00000180459.3	926	7	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	232.710418522439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCCTCAAAGTTCCTTAA	NA	False	NA	22	True	AAAACA	-8	NA	126165530	126161760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
ES_00052293	chr7	-	2386	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGATTTCTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	126182419	126170571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ES_00052294	chr7	-	2487	17	FSM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	42.5708508694623	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGATTTCTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	126183452	126170571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345
ES_00052296	chr7	-	1752	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	0	-181	0	181	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGCTATAGTTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	126182362	126171076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
ES_00052300	chr7	-	829	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	126224848	126222420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126222752_126224061_126224206_126224494
ES_00052301	chr7	-	1105	2	FSM	ENSMUSG00000030717.10	ENSMUST00000131174.2	2449	2	1344	0	10	0	multi-exon	FALSE	canonical	3	3748	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGCTTTGGCGTGTGTTG	NA	False	NA	-11	True	AATAAA	-44	NA	126224838	126222423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126222752_126224061
ES_00052304	chr7	-	661	1	FSM	ENSMUSG00000066175.3	ENSMUST00000084587.2	348	1	1	-314	1	314	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGCTACATCTTTGGA	NA	False	NA	NA	False	AATAAA	-18	NA	126248741	126248080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126248100_126248700
ES_00052311	chr7	-	2062	5	FSM	ENSMUSG00000059772.13	ENSMUST00000084586.9	2062	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.44983221287567	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAAAGTTCTAGCCG	5132	False	NA	NA	False	NA	NA	NA	126294811	126289849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126290828_126290910_126290996_126291099_126291832_126291924_126291977_126294596
ES_00052312	chr7	-	1623	11	FSM	ENSMUSG00000030707.16	ENSMUST00000032949.14	1660	11	56	-19	-6	19	multi-exon	FALSE	canonical	0	0	junction_5	5.95315042645489	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAGCCCCGAGGCTTCC	NA	False	NA	NA	False	AATAAA	-40	NA	126303932	126298925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163_126300269_126300461_126300582_126300689_126300875_126300961_126301092_126301177_126301301_126302147_126302347_126303823
ES_00052314	chr7	-	1409	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	-9	0	7	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCAGGTTTGATTGGGG	5226	False	NA	NA	False	AATAAA	-22	NA	126391512	126385030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
ES_00052316	chr7	-	453	2	FSM	ENSMUSG00000030697.8	ENSMUST00000206477.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	3	2598	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGCTGCACCCCAAGAGA	NA	False	NA	NA	False	NA	NA	NA	126386511	126385400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126385734_126386391
ES_00052317	chr7	-	881	8	FSM	ENSMUSG00000030697.8	ENSMUST00000205935.2	881	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	908.071807823184	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAATGTGGCAGCCATCT	5073	False	NA	NA	False	NA	NA	NA	126391665	126385460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126391232_126391396_126391594
ES_00052321	chr7	-	1461	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	-1	0	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126399619	126394405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
ES_00052322	chr7	-	1549	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398313	126394407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
ES_00052327	chr7	-	1837	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106342.8	1840	7	0	3	0	2	multi-exon	FALSE	canonical	3	16	junction_6	388.334763945863	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTTTTGTGCTTGGATT	9346	False	NA	-2	True	ATTAAA	-28	NA	126460858	126450754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126452164_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460797
ES_00052328	chr7	-	1973	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTTTGTGCTTGGA	9194	False	NA	-4	True	ATTAAA	-26	NA	126461010	126450756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ES_00052329	chr7	-	1741	7	FSM	ENSMUSG00000030689.16	ENSMUST00000125624.8	1741	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	315.786012286098	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9917	False	NA	-4	True	ATTAAA	-15	NA	126461549	126451604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126452164_126456397_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
ES_00052333	chr7	-	4730	19	FSM	ENSMUSG00000059981.13	ENSMUST00000071268.11	4720	19	0	-10	0	10	multi-exon	TRUE	canonical	3	55	junction_2	21.6270292703766	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCCTTTTTGTCTAAGG	8433	False	NA	5	True	AATAAA	-30	NA	126483875	126464839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126466088_126466168_126466352_126467281_126467495_126470573_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
ES_00052334	chr7	-	4987	16	FSM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	1	-3	1	3	multi-exon	FALSE	canonical	3	97	junction_14	9.03228776236797	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCCCAGGCTGCCTCT	8434	False	NA	NA	False	NA	NA	NA	126483874	126468671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
ES_00052336	chr7	-	1996	5	FSM	ENSMUSG00000060538.15	ENSMUST00000120007.8	1087	5	-839	-70	-10	23	multi-exon	FALSE	canonical	3	60	junction_1	3.20156211871642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTTTGTTTTT	6232	False	NA	70	True	ATTAAA	-37	NA	126497435	126485319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197
ES_00052337	chr7	-	917	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	0	-2	0	0	multi-exon	FALSE	canonical	3	22	junction_5	16.451139778143	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGTAAGGTACTTACTG	6242	False	NA	0	True	AATAAA	-16	NA	126497425	126485389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
ES_00052339	chr7	-	2811	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	24	2	24	-2	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTCTTTTTCCCTCTT	NA	False	NA	-2	True	AATAAA	-19	NA	126613769	126586033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
ES_00052340	chr7	-	4387	3	FSM	ENSMUSG00000107068.2	ENSMUST00000032918.4	4373	3	0	-14	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACGCCTTTAATCCCAGC	6455	False	NA	-20	True	AATAAA	-28	NA	126619499	126614222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126614642_126615371_126615455_126615614
ES_00052341	chr7	-	2680	6	FSM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	0	-30	0	30	multi-exon	FALSE	canonical	0	0	junction_1	289.408085581588	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTGTTGTGTGTGCTCA	256	False	NA	3	True	AATAAA	-37	NA	126625698	126621271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ES_00052342	chr7	-	2351	5	FSM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	0	-4	0	0	multi-exon	FALSE	canonical	3	463	junction_1	136.928813622261	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	330	False	NA	-27	True	AATAAA	-18	NA	126625624	126621301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ES_00052343	chr7	-	2948	6	NNC	ENSMUSG00000030678.8	novel	2650	6	NA	NA	205	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_1	162.349006772447	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	NA	False	NA	-27	True	AATAAA	-18	NA	126625991	126621301	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ES_00052344	chr7	-	2644	5	ISM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	74	5	0	0	intron_retention	FALSE	canonical	0	0	junction_1	321.496014749794	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTCTCTGAGTTCCTAA	330	False	NA	-32	True	AATAAA	-13	NA	126625624	126621306	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475
ES_00052345	chr7	-	2287	6	FSM	ENSMUSG00000030678.8	ENSMUST00000206254.2	2282	6	0	-5	0	0	multi-exon	FALSE	canonical	3	90	junction_5	257.403496479749	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	NA	False	NA	-27	True	AATAAA	-18	NA	126626196	126621301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
ES_00052346	chr7	-	2698	7	NNC	ENSMUSG00000030678.8	novel	2282	6	NA	NA	-152	16	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	241.899944880798	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTTCACCAAGCCCCCT	NA	False	NA	-11	True	AATAAA	-34	NA	126626361	126621285	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
ES_00052348	chr7	-	2087	15	NNC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	395	junction_7	107.774353277994	161	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7925	False	NA	-7	True	AATACA	-12	NA	126641643	126626903	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631871_126631897_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ES_00052351	chr7	-	1877	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	182	-9	-3	9	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGCACCTCTTTATACCA	NA	False	NA	NA	False	NA	NA	NA	126721216	126706276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
ES_00052352	chr7	-	3458	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	-170	-4	-120	4	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGTTTTTTTGAG	5288	False	NA	-2	True	AATAAA	-17	NA	126795342	126790827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
ES_00052353	chr7	-	3283	7	FSM	ENSMUSG00000042502.11	ENSMUST00000205316.2	2912	7	-13	-358	0	-7	multi-exon	TRUE	canonical	3	19	junction_6	218.502034061216	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGCTTTTTTTGTTGTT	5458	False	NA	-13	True	AATAAA	-6	NA	126795172	126790838	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795100
ES_00052361	chr7	-	715	4	NNC	ENSMUSG00000042462.5	novel	676	3	NA	NA	0	51075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1847.25405820519	814	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCTGAGCCTGGCAGT	2490	False	NA	NA	False	NA	NA	NA	126859881	126805055	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126805095_126856130_126856509_126858529_126858641_126859694
ES_00052362	chr7	-	582	2	FSM	ENSMUSG00000000486.14	ENSMUST00000131208.2	575	2	0	-7	0	7	multi-exon	FALSE	canonical	3	372	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGGAGTCTTCTTCCCAG	NA	False	NA	0	True	AATAAA	-25	NA	126814297	126813611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126814017_126814120
ES_00052363	chr7	-	1508	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	0	-22	0	7	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGGAGTCTTCTTCCCAG	NA	False	NA	0	True	AATAAA	-25	NA	126817670	126813611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
ES_00052369	chr7	-	2177	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2861	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTAATGTTTGGTT	2841	False	NA	-8	True	AATAAA	-19	NA	126873227	126871050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126871000_126873200
ES_00052373	chr7	-	3863	3	FSM	ENSMUSG00000030823.7	ENSMUST00000049052.4	3878	3	15	0	15	0	multi-exon	FALSE	canonical	2	4	junction_2	1	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTATTTTGTGGGTTCT	NA	False	NA	NA	False	NA	NA	NA	126986323	126981431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126984803_126985691_126985806_126985945
ES_00052377	chr7	-	1018	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	-3	0	3	multi-exon	FALSE	canonical	3	34	junction_1	2.5	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTTTTGTGTTAAGAAAA	4	True	NA	-1	True	ATTAAA	-20	NA	127021206	127018135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127018814_127020576_127020691_127020980
ES_00052378	chr7	-	1305	4	FSM	ENSMUSG00000045251.14	ENSMUST00000148483.8	1302	4	0	-3	0	3	multi-exon	FALSE	canonical	3	9	junction_3	18.7794213613377	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTTTTGTGTTAAGAAAA	-1	True	NA	-1	True	ATTAAA	-20	NA	127021211	127018135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127018814_127019181_127019278_127020576_127020691_127020794
ES_00052379	chr7	-	2724	2	FSM	ENSMUSG00000045251.14	ENSMUST00000135886.2	2732	2	12	-4	12	2	multi-exon	FALSE	canonical	3	55	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTTTTGTGTTAAGAAA	6896	False	NA	-2	True	ATTAAA	-19	NA	127021228	127018136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127018814_127019181
ES_00052380	chr7	-	1096	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAGTGTTTTGTGTTA	6930	False	NA	-7	True	ATTAAA	-14	NA	127021194	127018141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
ES_00052382	chr7	-	2631	1	FSM	ENSMUSG00000101225.2	ENSMUST00000185351.2	2432	1	15	-214	15	214	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGGCACCTCTCATTC	9991	False	NA	NA	False	AATAAA	-19	NA	127112026	127109395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127109400_127112000
ES_00052383	chr7	-	2203	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	247	86	32	-86	multi-exon	FALSE	canonical	3	15	junction_4	3.80788655293195	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGGCCCCTACTCA	8533	False	NA	NA	False	NA	NA	NA	127187520	127181640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
ES_00052386	chr7	-	284	1	Intergenic	novelGene_3827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127237412	127237128	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_127237100_127237400
ES_00052387	chr7	-	891	6	FSM	ENSMUSG00000030814.18	ENSMUST00000205977.2	891	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	191.890176924198	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAGTCATTTACCCACAC	NA	False	NA	NA	False	NA	NA	NA	127307811	127265967	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127266219_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
ES_00052388	chr7	-	654	4	FSM	ENSMUSG00000030814.18	ENSMUST00000207019.2	654	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	237.476080666851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127307898	127304149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127304348_127304898_127304985_127307051_127307131_127307607
ES_00052389	chr7	-	1132	6	FSM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_4	29.8971570554794	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127308105	127304149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
ES_00052390	chr7	-	213	2	Intergenic	novelGene_3831	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGTGGTTAAAATCAGG	NA	False	NA	NA	False	NA	NA	NA	127429233	127375230	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_127375265_127429054
ES_00052392	chr7	-	770	4	NNC	ENSMUSG00000096145.3	novel	748	3	NA	NA	0	53743	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.088942691219	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAACCAACAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	127494789	127438491	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_127438514_127492234_127492664_127493676_127493787_127494580
ES_00052393	chr7	-	5768	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	4	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAACAC	NA	False	NA	NA	False	AATAAA	-41	NA	127476000	127462218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127466536_127466927_127467597_127475218
ES_00052395	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127492664_127493676_127493787_127494580
ES_00052397	chr7	-	1852	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
ES_00052398	chr7	-	2557	2	ISM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	29	0	0	0	intron_retention	FALSE	canonical	3	106	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534622	127531809	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_127532287_127532542
ES_00052399	chr7	-	1204	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	-186	-2	-146	2	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGCTTTGTGGCATCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	127534837	127531807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
ES_00052402	chr7	-	1114	6	NNC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	37.5105318544006	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGGCTTTGTGGCATC	NA	False	NA	NA	False	AATAAA	-14	NA	127534675	127531810	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_127532287_127532542_127532665_127532925_127533005_127533310_127533453_127533561_127533800_127534618
ES_00052403	chr7	-	1131	5	NIC	ENSMUSG00000070371.12	novel	3028	15	NA	NA	-135	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	42.198933635816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGGCTTTGTGGCATC	NA	False	NA	NA	False	AATAAA	-14	NA	127534826	127531810	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_127532287_127532542_127532665_127533310_127533453_127533561_127533800_127534673
ES_00052404	chr7	-	1132	6	FSM	ENSMUSG00000070371.12	ENSMUST00000156152.3	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	34.92506263416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAATGTGGCTCAACC	NA	False	NA	NA	False	NA	NA	NA	127534622	127531970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534574
ES_00052406	chr7	-	3911	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	107	-218	107	218	multi-exon	FALSE	canonical	3	1219	junction_2	45	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGCCATGCAAGATAAATT	NA	False	NA	NA	False	NA	NA	NA	127592932	127588661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127592138_127592286_127592344_127592554
ES_00052412	chr7	-	1921	12	FSM	ENSMUSG00000030780.16	ENSMUST00000155177.8	1921	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.3106556457227	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCACTGATGTCCTCCA	1168	False	NA	NA	False	NA	NA	NA	127897280	127871278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
ES_00052417	chr7	-	4266	11	FSM	ENSMUSG00000030846.16	ENSMUST00000141079.8	4266	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	28.929051142407	2049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAAATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128063376	128041948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ES_00052418	chr7	-	2835	13	FSM	ENSMUSG00000030846.16	ENSMUST00000106228.8	2835	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	81.5772895275803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGTTGCTATAAGT	NA	False	NA	NA	False	ATTAAA	-14	NA	128063397	128043126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
ES_00052419	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063079	128044003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ES_00052420	chr7	-	2319	13	FSM	ENSMUSG00000030846.16	ENSMUST00000123666.8	2319	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	77.5911650182473	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063441	128044003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128048454_128048832_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ES_00052423	chr7	-	307	1	FSM	ENSMUSG00000108720.2	ENSMUST00000206944.2	1098	1	103	688	103	-688	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAAATCAATAAGGTGG	NA	False	NA	NA	False	NA	NA	NA	128346897	128346590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_128346600_128346900
ES_00052424	chr7	-	494	1	FSM	ENSMUSG00000030849.19	ENSMUST00000208844.2	3981	1	-32	3519	-24	-3519	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATCGTCGTGCCGAACGC	NA	False	NA	NA	False	NA	NA	NA	129868017	129867523	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_129867500_129868000
ES_00052425	chr7	-	2594	1	FSM	ENSMUSG00000082988.4	ENSMUST00000121836.2	2325	1	-22	-247	-22	247	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTATTTAGAATATGAGTA	NA	False	NA	NA	False	NA	NA	NA	129956114	129953520	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_129953500_129956100
ES_00052426	chr7	-	4711	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	24	0	24	0	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121286	129993222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ES_00052428	chr7	-	1701	11	NIC	ENSMUSG00000030850.18	novel	4685	12	NA	NA	4	-7	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	75.5916000624408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTCTGGAGCAAGGTG	NA	False	NA	37	True	TTTAAA	-45	NA	130121256	129996081	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_129996467_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ES_00052432	chr7	-	1182	1	FSM	ENSMUSG00000108940.2	ENSMUST00000207954.2	1662	1	-105	585	-105	-585	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAACAAACAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	130059508	130058326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_130058300_130059500
ES_00052433	chr7	-	1435	11	FSM	ENSMUSG00000040331.17	ENSMUST00000160289.9	1435	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_1	62.2636330453018	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGTGATCGTTTTTATTG	NA	False	NA	-7	True	ATTAAA	-22	NA	130149111	130134255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543_130141696_130144409_130144541_130147624_130147703_130148721
ES_00052436	chr7	-	723	1	FSM	ENSMUSG00000109225.2	ENSMUST00000207466.2	1265	1	196	346	196	-346	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGCTGGAATACGGTTC	8300	False	NA	NA	False	NA	NA	NA	130255926	130255203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_130255200_130255900
ES_00052437	chr7	-	211	1	Intergenic	novelGene_3834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	415	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCCACCGTTTCCAGGA	NA	False	NA	NA	False	NA	NA	NA	130437892	130437681	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_130437700_130437900
ES_00052440	chr7	-	881	2	Genic_Genomic	ENSMUSG00000062758.7	novel	801	1	NA	NA	0	32524	multi-exon	FALSE	non_canonical	0	0	junction_1	0	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTCAGGGGCTGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	131216717	131183392	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_131183421_131215864
ES_00052443	chr7	-	3264	2	FSM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTGACGAATTATTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	132201366	132196606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_132199546_132201041
ES_00052444	chr7	-	4351	4	FSM	ENSMUSG00000030956.16	ENSMUST00000097998.9	4341	4	0	-10	0	4	multi-exon	FALSE	canonical	3	17	junction_1	53.4852004452322	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCGCATGGCTGTGTG	NA	False	NA	-8	True	AATAAA	-23	NA	132415615	132313806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_132317732_132373306_132373359_132380864_132381115_132415491
ES_00052445	chr7	-	6136	5	FSM	ENSMUSG00000030956.16	ENSMUST00000097999.9	5465	5	-667	-4	-309	4	multi-exon	FALSE	canonical	3	27	junction_4	41.3430768085782	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCGCATGGCTGTGTG	NA	False	NA	-8	True	AATAAA	-23	NA	132415924	132313806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132414794
ES_00052446	chr7	-	5312	5	NIC	ENSMUSG00000030956.16	novel	5465	5	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	27.206387117734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCGCATGGCTGTGTG	NA	False	NA	-8	True	AATAAA	-23	NA	132415615	132313806	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415309
ES_00052447	chr7	-	5057	5	NIC	ENSMUSG00000030956.16	novel	5052	5	NA	NA	67	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	38.4537059332387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCCTGCGCATGGC	NA	False	NA	-14	True	AATAAA	-17	NA	132415548	132313812	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415491
ES_00052449	chr7	-	1198	7	NNC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	155.35193021724	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454307	132429185	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_132429612_132433088_132433306_132438828_132438937_132448309_132448492_132452319_132452439_132453154_132453221_132454227
ES_00052450	chr7	-	1107	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454402	132429185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
ES_00052452	chr7	-	2003	10	FSM	ENSMUSG00000030970.17	ENSMUST00000166439.8	1997	10	0	-6	0	0	multi-exon	FALSE	canonical	3	156	junction_8	235.790763073148	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACAAAAGAAAAAAGTATT	NA	False	NA	49	True	NA	NA	NA	132724895	132589306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724869
ES_00052453	chr7	-	2321	11	FSM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	136.177861636905	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	6	True	AGTAAA	-13	NA	132725096	132589349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869
ES_00052454	chr7	-	2313	12	NIC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	31	-165	combination_of_known_junctions	FALSE	canonical	3	44	junction_11	251.022010164003	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGGTGCCTCTGCTGAT	NA	False	NA	24	True	AAAAAG	-44	NA	132725554	132589514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869_132725086_132725386
ES_00052456	chr7	-	2189	9	FSM	ENSMUSG00000030979.14	ENSMUST00000135760.8	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_8	13.9821314541096	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133310823	133287971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_133288846_133291310_133291410_133292236_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ES_00052457	chr7	-	3043	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	-235	-1164	-23	1051	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTAGTGCCCTGCAGA	NA	False	NA	NA	False	NA	NA	NA	133311033	133286920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
ES_00052459	chr7	-	2900	12	FSM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	102	-4	102	0	multi-exon	FALSE	canonical	3	66	junction_11	95.5958261822716	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133361896	133322670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133361749
ES_00052460	chr7	-	2955	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133378532	133322670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
ES_00052463	chr7	-	9823	15	NNC	ENSMUSG00000031004.9	novel	10061	14	NA	NA	-113	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	75.723618023247	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGGCCTCTCTGACAA	NA	False	NA	-18	True	AATAAA	-19	NA	135318203	135291512	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_135291863_135294808_135295226_135295960_135298421_135298771_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
ES_00052466	chr7	-	1150	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	0	-24	0	24	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACTCTGGAGACTGGCC	NA	False	NA	17	True	ATTAAA	-38	NA	137012491	136977278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
ES_00052467	chr7	-	699	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	137012464	136977865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
ES_00052472	chr7	-	3361	17	FSM	ENSMUSG00000025474.10	ENSMUST00000209930.2	3341	17	0	-20	0	7	multi-exon	FALSE	canonical	3	147	junction_16	76.1033169037329	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAATGATTTCCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	139616242	139575860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ES_00052473	chr7	-	2960	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616179	139575908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ES_00052474	chr7	-	3060	18	FSM	ENSMUSG00000025474.10	ENSMUST00000211638.2	3060	18	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_17	64.0289186395126	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCCTGCGCAATGAGCT	NA	False	NA	NA	False	NA	NA	NA	139616582	139575960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
ES_00052476	chr7	-	655	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11401	13	11401	-5	3prime_fragment	FALSE	canonical	3	34	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATCTATCTGGGTCGTG	9440	False	NA	-14	True	AGTAAA	-4	NA	139650739	139649806	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_139649947_139650224
ES_00052478	chr7	-	542	3	FSM	ENSMUSG00000025466.20	ENSMUST00000133834.2	518	3	0	-24	0	0	multi-exon	FALSE	canonical	3	24	junction_1	215.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	2668	False	NA	0	True	NA	NA	NA	139681157	139679382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139679620_139679715_139679866_139681002
ES_00052479	chr7	-	721	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1947	False	NA	0	True	NA	NA	NA	139681878	139679382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ES_00052480	chr7	-	536	6	FSM	ENSMUSG00000025466.20	ENSMUST00000142105.8	536	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	173.251262621662	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1536	False	NA	0	True	NA	NA	NA	139682289	139679382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139679536_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ES_00052481	chr7	-	685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ES_00052482	chr7	-	787	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1595	False	NA	0	True	NA	NA	NA	139682230	139679382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
ES_00052484	chr7	-	3134	1	FSM	ENSMUSG00000025465.14	ENSMUST00000211120.2	3128	1	-54	48	0	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAACCAGGGCTATACAG	NA	False	NA	NA	False	NA	NA	NA	139696389	139693255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139693300_139696400
ES_00052490	chr7	-	1461	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140462222	140443582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
ES_00052494	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	9574	junction_1	0	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140535900	140534749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140535087_140535582
ES_00052495	chr7	-	711	2	Fusion	ENSMUSG00000060591.10_ENSMUSG00000025492.7	novel	655	2	NA	NA	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140590683	140534749	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_140535087_140590309
ES_00052496	chr7	-	711	3	Fusion	ENSMUSG00000060591.10_ENSMUSG00000025492.7	novel	655	2	NA	NA	0	0	multi-exon	TRUE	canonical	0	0	junction_2	4787	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140590683	140534749	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_140535087_140535582_140535679_140590405
ES_00052498	chr7	-	704	3	NNC	ENSMUSG00000025492.7	novel	678	2	NA	NA	0	33540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCAAAGCTGGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	140590683	140555958	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_140555988_140589501_140589803_140590309
ES_00052499	chr7	-	203	2	Intergenic	novelGene_3841	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	251	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGGAGCCCCTCGGTTC	NA	False	NA	NA	False	NA	NA	NA	140602694	140562751	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_140562904_140602643
ES_00052500	chr7	-	212	1	FSM	ENSMUSG00000110355.2	ENSMUST00000209475.2	934	1	667	55	667	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGCATATTGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	140572759	140572547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140572500_140572800
ES_00052503	chr7	-	1953	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210167.2	1897	9	0	-56	0	56	multi-exon	TRUE	canonical	3	23	junction_8	41.6921380478382	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGAGACCCTGACTCTTC	NA	False	NA	26	True	NA	NA	NA	140680437	140671031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ES_00052504	chr7	-	1615	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	0	-3	0	1	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGCTTATTTCTGTCTGG	NA	False	NA	-29	True	AATAAA	-18	NA	140680455	140671086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ES_00052506	chr7	-	1688	11	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_9	57.0807323008386	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676601	140671087	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140675967_140676037_140676532
ES_00052507	chr7	-	1785	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-115	0	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676767	140671087	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ES_00052508	chr7	-	1858	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	-130	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	41.7703894176098	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140676782	140671089	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676472
ES_00052509	chr7	-	3125	13	FSM	ENSMUSG00000054662.9	ENSMUST00000211515.2	3112	13	0	-13	0	0	multi-exon	FALSE	canonical	3	134	junction_9	11.5926221748528	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGATCCAGTTTCTA	NA	False	NA	-8	True	AATAAA	-28	NA	140688587	140681124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163
ES_00052510	chr7	-	3019	24	FSM	ENSMUSG00000054662.9	ENSMUST00000067836.9	3019	24	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	30.0592986723404	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGATCCAGTTTCTA	NA	False	NA	-8	True	AATAAA	-28	NA	140697719	140681124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
ES_00052515	chr7	-	674	2	Genic_Genomic	ENSMUSG00000110275.2	novel	580	1	NA	NA	0	36284	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAACGGGAGATATATGTG	2385	False	NA	NA	False	NA	NA	NA	140758377	140721513	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_140721542_140757731
ES_00052517	chr7	-	2091	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140749139	140740240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
ES_00052518	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	-2	0	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	7992	False	NA	NA	False	ATTAAA	-16	NA	140752770	140740238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ES_00052519	chr7	-	718	1	FSM	ENSMUSG00000110275.2	ENSMUST00000211731.2	580	1	-54	-84	-54	84	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAACTTTAACTTTTAAAA	2331	False	NA	1	True	NA	NA	NA	140758431	140757713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140757700_140758400
ES_00052520	chr7	-	2836	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	0	-8	0	8	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTCTCCTGTCCTGGAT	NA	False	NA	NA	False	AATAAA	-27	NA	140773873	140769009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ES_00052521	chr7	-	2272	6	FSM	ENSMUSG00000025499.19	ENSMUST00000168550.8	2272	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	252.24797323269	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGCAGGCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	140773917	140769846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ES_00052522	chr7	-	2191	5	FSM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	0	-992	0	0	multi-exon	FALSE	canonical	3	437	junction_1	76.3392919799496	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGCAGGCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	140773918	140769846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ES_00052523	chr7	-	1122	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124971.2	1122	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	242.211039178647	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	NA	False	NA	-6	True	AGTAAA	-14	NA	140773795	140770842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140771381_140772043_140772254_140772354_140772534_140772742_140772895_140773752
ES_00052524	chr7	-	523	4	FSM	ENSMUSG00000038580.14	ENSMUST00000167790.3	507	4	0	-16	0	8	multi-exon	TRUE	canonical	2	4	junction_2	2.94392028877595	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGGTGTGTGATGTCT	NA	False	NA	NA	False	AATAAA	-27	NA	140859044	140858234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140858435_140858530_140858636_140858745_140858848_140858928
ES_00052526	chr7	-	2757	12	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-1330	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	32.0206544912746	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140905375	140877097	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354
ES_00052529	chr7	-	210	2	Antisense	novelGene_ENSMUSG00000025504.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	54	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCATTTAAAAATTTTTT	2768	False	NA	NA	False	NA	NA	NA	140938691	140928356	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_140928536_140938660
ES_00052531	chr7	-	2348	7	FSM	ENSMUSG00000051007.16	ENSMUST00000156353.8	2348	7	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	10.4721853816033	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTGAGTTCTTGCGT	5483	False	NA	48	True	NA	NA	NA	140994003	140988047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140990799_140990898_140991005_140991710_140991788_140993914
ES_00052533	chr7	-	2571	10	FSM	ENSMUSG00000019082.19	ENSMUST00000019226.14	2811	10	240	0	-14	0	multi-exon	FALSE	canonical	3	72	junction_9	20.9708792800344	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTAAGAGTCTGTGCTTG	-5	True	NA	-14	True	AATAAA	-23	NA	141017565	141009656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
ES_00052534	chr7	-	3263	15	FSM	ENSMUSG00000025507.14	ENSMUST00000190068.7	3263	15	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_13	16.8336700983354	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023266	141018025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021698_141022063_141022478_141022880
ES_00052535	chr7	-	3653	15	FSM	ENSMUSG00000025507.14	ENSMUST00000131980.8	3653	15	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_14	11.4118180776218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023905	141018025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141022478_141022880_141023267_141023881
ES_00052536	chr7	-	3322	15	FSM	ENSMUSG00000025507.14	ENSMUST00000147268.8	3318	15	0	-4	0	0	multi-exon	FALSE	canonical	2	4	junction_12	20.5412725397192	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023921	141018025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021230_141021387_141021443_141021524_141021698_141022063_141022478_141022880_141023267_141023881
ES_00052542	chr7	-	3788	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2697	False	NA	-5	True	AATAAA	-21	NA	141456224	141435319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
ES_00052543	chr7	-	3848	7	FSM	ENSMUSG00000025139.15	ENSMUST00000130439.3	1892	7	-145	-1811	34	5	multi-exon	FALSE	canonical	3	12	junction_6	128.120602905578	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCTTGAGTATTTTTT	2731	False	NA	0	True	AATAAA	-26	NA	141456190	141435314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141452431_141452521_141456012
ES_00052546	chr7	-	958	5	FSM	ENSMUSG00000025147.8	ENSMUST00000210684.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	69.7006994226026	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGATGTTTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	141614802	141562769	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570130_141570243_141614721
ES_00052548	chr7	-	797	3	FSM	ENSMUSG00000045777.15	ENSMUST00000105988.2	824	3	27	0	27	0	multi-exon	FALSE	canonical	1	2	junction_1	1	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCACTGAGATTCAGGATG	NA	False	NA	NA	False	NA	NA	NA	141927463	141909658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141909852_141924594_141925048_141927312
ES_00052553	chr7	-	814	1	FSM	ENSMUSG00000009248.7	ENSMUST00000121862.3	814	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTAAGTTCCAGGACGG	NA	False	NA	NA	False	GGGGCT	-20	NA	142522454	142521640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_142521600_142522500
ES_00052554	chr7	-	1183	4	FSM	ENSMUSG00000059277.13	ENSMUST00000155952.8	2219	4	54	982	45	-319	multi-exon	FALSE	canonical	2	6	junction_1	1.69967317119759	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTTATAACACACATTTC	NA	False	NA	-14	True	NA	NA	NA	142607369	142587339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_142587664_142591017_142591119_142598231_142598394_142606773
ES_00052555	chr7	-	667	3	FSM	ENSMUSG00000037664.14	ENSMUST00000208137.2	667	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACGGTTTTGTGGAAATC	NA	False	NA	NA	False	NA	NA	NA	143013899	143012634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143012759_143012848_143012988_143013495
ES_00052557	chr7	-	863	3	NNC	ENSMUSG00000010760.6	novel	757	2	NA	NA	207	-3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	46.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGTGTGGTCTGTGTAG	NA	False	NA	-1	True	AATAAA	-24	NA	143056523	143055284	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_143055554_143055793_143056260_143056395
ES_00052558	chr7	-	2291	15	FSM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	0	-10	0	1	multi-exon	FALSE	canonical	2	10	junction_14	301.333092528951	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTTTTTTTGTTGTTTG	NA	False	NA	0	True	ATTAAA	-21	NA	143102565	143067314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102473
ES_00052560	chr7	-	2264	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	0	-5	0	1	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTTTTTTTGTTGTTTG	NA	False	NA	0	True	ATTAAA	-21	NA	143102843	143067314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ES_00052563	chr7	-	3222	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_21	336.211639490553	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTCTAGCCTTCGC	NA	False	NA	NA	False	NA	NA	NA	143153827	143110966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
ES_00052564	chr7	-	2463	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	-1	0	0	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTGGTCTGCCCTCTCA	NA	False	NA	-2	True	AATAAA	-16	NA	143153793	143111442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ES_00052567	chr7	-	2298	7	FSM	ENSMUSG00000010751.16	ENSMUST00000146692.8	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	62.0232931154811	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGCTGTGCCTTGTGCT	NA	False	NA	NA	False	AGTAAA	-24	NA	143203398	143190461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143192174_143192981_143193027_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ES_00052573	chr7	-	3060	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	226	0	-38	0	multi-exon	TRUE	canonical	0	0	junction_7	258.149054338875	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024520	143989471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ES_00052577	chr7	-	3251	22	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	1	-800	combination_of_known_splicesites	FALSE	canonical	2	12	junction_1	47.2463510450789	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTGCTCACTCGCCATG	NA	False	NA	NA	False	AAGAAA	-42	NA	144107465	144038769	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_144038949_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
ES_00052583	chr7	-	2854	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	48	91	-32	7	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTGTGGGCTACACAAGA	NA	False	NA	45	True	NA	NA	NA	144837700	144807750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
ES_00052584	chr7	+	818	1	Intergenic	novelGene_3567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCGTGGTTATAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	3051108	3051926	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3051100_3051900
ES_00052585	chr7	+	265	1	Intergenic	novelGene_3568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTGAAGTCAGCTACAGT	NA	False	NA	NA	False	NA	NA	NA	3197152	3197417	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3197200_3197400
ES_00052587	chr7	+	204	1	Intergenic	novelGene_3577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAGGCTAACAGACTGGA	NA	False	NA	NA	False	NA	NA	NA	4223581	4223785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_4223600_4223800
ES_00052588	chr7	+	1886	1	Intergenic	novelGene_3578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAGCCAAAATCAAGCACA	NA	False	NA	NA	False	NA	NA	NA	4308387	4310273	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_4308400_4310300
ES_00052589	chr7	+	206	1	Intergenic	novelGene_3582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGATCCTTTTCATCTGT	NA	False	NA	NA	False	NA	NA	NA	4887576	4887782	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_4887600_4887800
ES_00052590	chr7	+	264	1	Intergenic	novelGene_3592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGCCTATTACCCAGCTC	NA	False	NA	NA	False	NA	NA	NA	11099470	11099734	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_11099500_11099700
ES_00052591	chr7	+	212	1	Intergenic	novelGene_3593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAATTCTATTAGGGGA	NA	False	NA	NA	False	NA	NA	NA	11108987	11109199	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_11109000_11109200
ES_00052592	chr7	+	274	1	Intergenic	novelGene_3594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	11222570	11222844	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_11222600_11222800
ES_00052593	chr7	+	202	1	Intergenic	novelGene_3596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACACTTATTTTTAATGA	NA	False	NA	NA	False	NA	NA	NA	12177124	12177326	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_12177100_12177300
ES_00052594	chr7	+	326	1	Intergenic	novelGene_3600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCATGATCAATCTCTGT	NA	False	NA	NA	False	NA	NA	NA	12668481	12668807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_12668500_12668800
ES_00052596	chr7	+	220	1	Intergenic	novelGene_3603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGCTTCCCAGGGAACC	NA	False	NA	NA	False	AAGAAA	-14	NA	15572575	15572795	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_15572600_15572800
ES_00052598	chr7	+	233	1	Intergenic	novelGene_3608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATAAATTAAGGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	17018813	17019046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_17018800_17019000
ES_00052600	chr7	+	221	1	Intergenic	novelGene_3610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACTATTAATATATAAA	NA	False	NA	NA	False	NA	NA	NA	17127983	17128204	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_17128000_17128200
ES_00052601	chr7	+	335	1	Intergenic	novelGene_3611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	415	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAATTTTACTATTTAGG	NA	False	NA	NA	False	NA	NA	NA	17129191	17129526	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_17129200_17129500
ES_00052602	chr7	+	2280	1	Intergenic	novelGene_3615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACACAGTTTCCCCTGT	NA	False	NA	NA	False	NA	NA	NA	18431830	18434110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_18431800_18434100
ES_00052604	chr7	+	210	1	Intergenic	novelGene_3618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGATTGTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18737465	18737675	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_18737500_18737700
ES_00052605	chr7	+	224	1	Intergenic	novelGene_3619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATGAGTCTTAACTCAA	5254	False	NA	NA	False	NA	NA	NA	19099980	19100204	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19100000_19100200
ES_00052606	chr7	+	209	1	Intergenic	novelGene_3627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGAGAGCTTGCTGCCAG	NA	False	NA	NA	False	NA	NA	NA	19664352	19664561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19664400_19664600
ES_00052607	chr7	+	234	1	Intergenic	novelGene_3628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACTATAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	19665023	19665257	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19665000_19665300
ES_00052608	chr7	+	342	1	Intergenic	novelGene_3629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCATAGTTTTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	20078508	20078850	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_20078500_20078800
ES_00052609	chr7	+	342	1	Intergenic	novelGene_3630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCATAGTTTTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	20756891	20757233	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_20756900_20757200
ES_00052610	chr7	+	343	1	Intergenic	novelGene_3631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	22039658	22040001	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_22039700_22040000
ES_00052611	chr7	+	1137	1	Intergenic	novelGene_3636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTTTGTAAATAGATTA	1187	False	NA	NA	False	NA	NA	NA	25269634	25270771	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_25269600_25270800
ES_00052612	chr7	+	269	1	Intergenic	novelGene_3637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGATCCTAAAACAGCTAC	3448	False	NA	NA	False	NA	NA	NA	25271895	25272164	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_25271900_25272200
ES_00052613	chr7	+	207	1	Intergenic	novelGene_3638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTTCCCCTGATCTCAA	NA	False	NA	NA	False	NA	NA	NA	25426584	25426791	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_25426600_25426800
ES_00052615	chr7	+	280	1	Intergenic	novelGene_3643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	921	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAACTACAACATGCAGCA	213	False	NA	NA	False	NA	NA	NA	26707501	26707781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26707500_26707800
ES_00052617	chr7	+	805	1	Intergenic	novelGene_3645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGCAGAAGAAATAGTCAA	2102	False	NA	NA	False	NA	NA	NA	26709390	26710195	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26709400_26710200
ES_00052618	chr7	+	473	1	Intergenic	novelGene_3646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGAGAAAATAGTGTCTA	3158	False	NA	NA	False	NA	NA	NA	26710446	26710919	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26710400_26710900
ES_00052621	chr7	+	200	1	Intergenic	novelGene_3654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTCTTGAATTCAGTTC	NA	False	NA	NA	False	NA	NA	NA	27411276	27411476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27411300_27411500
ES_00052624	chr7	+	204	1	Intergenic	novelGene_3666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTATGACAGACTTAGATA	117	False	NA	NA	False	ATTAAA	-10	NA	28832502	28832706	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28832500_28832700
ES_00052625	chr7	+	538	1	Intergenic	novelGene_3673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGGGCTGCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	29345706	29346244	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29345700_29346200
ES_00052627	chr7	+	213	1	Intergenic	novelGene_3674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCTTTTAGCAGTCACC	1905	False	NA	NA	False	NA	NA	NA	29536951	29537164	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29537000_29537200
ES_00052628	chr7	+	201	1	Intergenic	novelGene_3676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAGAATCTTAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-10	NA	29660506	29660707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29660500_29660700
ES_00052629	chr7	+	217	1	Intergenic	novelGene_3677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAATATATATATA	NA	False	NA	NA	False	NA	NA	NA	29753613	29753830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29753600_29753800
ES_00052630	chr7	+	223	1	Intergenic	novelGene_3681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTCCCAATGCCTCAC	41	False	NA	NA	False	AAAACA	-13	NA	30493689	30493912	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_30493700_30493900
ES_00052631	chr7	+	360	1	Intergenic	novelGene_3683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGTATGACCGTGGGCC	NA	False	NA	NA	False	NA	NA	NA	31226660	31227020	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_31226700_31227000
ES_00052637	chr7	+	306	1	Intergenic	novelGene_3687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAGAAACACTTAGAC	NA	False	NA	NA	False	NA	NA	NA	39090090	39090396	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_39090100_39090400
ES_00052638	chr7	+	247	1	Intergenic	novelGene_3691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTATTCCTTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	39248909	39249156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_39248900_39249200
ES_00052639	chr7	+	248	1	Intergenic	novelGene_3693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2392	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTTTTTTTTTTAAGGA	NA	False	NA	NA	False	NA	NA	NA	41564265	41564513	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_41564300_41564500
ES_00052644	chr7	+	207	1	Intergenic	novelGene_3703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCCATCTTTTGATACAT	NA	False	NA	NA	False	NA	NA	NA	42972282	42972489	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42972300_42972500
ES_00052650	chr7	+	219	1	Intergenic	novelGene_3714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTTTTTGTCCCCGTGT	453	False	NA	NA	False	NA	NA	NA	45062275	45062494	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45062300_45062500
ES_00052651	chr7	+	480	1	Intergenic	novelGene_3717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTAATCTTTATGTGA	430	False	NA	NA	False	NA	NA	NA	45176578	45177058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45176600_45177100
ES_00052655	chr7	+	256	1	Intergenic	novelGene_3723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAATAAAGCATTGCTAAC	678	False	NA	NA	False	NA	NA	NA	49372923	49373179	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_49372900_49373200
ES_00052657	chr7	+	1956	1	Intergenic	novelGene_3725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGGCCCATGTGGGC	NA	False	NA	NA	False	NA	NA	NA	53535110	53537066	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_53535100_53537100
ES_00052658	chr7	+	849	1	Intergenic	novelGene_3726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCCGACAGGAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	53537573	53538422	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_53537600_53538400
ES_00052659	chr7	+	340	1	Intergenic	novelGene_3731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTTTTGGCCAAAGA	NA	False	NA	NA	False	NA	NA	NA	59032018	59032358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_59032000_59032400
ES_00052660	chr7	+	312	1	Intergenic	novelGene_3733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGACCACCTCGTGTT	NA	False	NA	NA	False	NA	NA	NA	63194583	63194895	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_63194600_63194900
ES_00052662	chr7	+	215	1	Intergenic	novelGene_3735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGACACTTTCAAAGCT	NA	False	NA	NA	False	NA	NA	NA	64466383	64466598	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_64466400_64466600
ES_00052663	chr7	+	295	1	Intergenic	novelGene_3737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAATGGCACTTCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	67869561	67869856	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_67869600_67869900
ES_00052664	chr7	+	226	1	Intergenic	novelGene_3740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTTTTTTTTAAAACTAG	NA	False	NA	NA	False	NA	NA	NA	73302324	73302550	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_73302300_73302600
ES_00052666	chr7	+	446	1	Intergenic	novelGene_3741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCACAGAACAGGCTACAT	NA	False	NA	NA	False	AAGAAA	-15	NA	75892909	75893355	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_75892900_75893400
ES_00052669	chr7	+	273	1	Intergenic	novelGene_3742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTTAAAAGTAAAATC	NA	False	NA	NA	False	NA	NA	NA	79017777	79018050	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_79017800_79018000
ES_00052670	chr7	+	226	1	Intergenic	novelGene_3744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTTGAAATTGAAAATAGC	NA	False	NA	NA	False	NA	NA	NA	79598464	79598690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_79598500_79598700
ES_00052671	chr7	+	203	1	Intergenic	novelGene_3748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTCCAGTACAGCCAG	4243	False	NA	NA	False	NA	NA	NA	80202839	80203042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_80202800_80203000
ES_00052673	chr7	+	203	1	Intergenic	novelGene_3749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATCTCGATTTTTAGAA	7453	False	NA	NA	False	NA	NA	NA	80479909	80480112	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_80479900_80480100
ES_00052674	chr7	+	888	1	Intergenic	novelGene_3754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTCAAAATCAGATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	81070205	81071093	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_81070200_81071100
ES_00052676	chr7	+	207	1	Intergenic	novelGene_3756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACTTAGAGTTTTATC	NA	False	NA	NA	False	NA	NA	NA	82623477	82623684	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_82623500_82623700
ES_00052678	chr7	+	1187	1	Intergenic	novelGene_3758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2705	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGGGCCAGGATGCTCAG	2973	False	NA	NA	False	NA	NA	NA	90063135	90064322	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_90063100_90064300
ES_00052680	chr7	+	326	1	Intergenic	novelGene_3762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCCTATATTCTAAATT	5396	False	NA	NA	False	NA	NA	NA	90065558	90065884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_90065600_90065900
ES_00052681	chr7	+	215	1	Intergenic	novelGene_3763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCTAAAATTAAGAACTCT	NA	False	NA	NA	False	NA	NA	NA	90090857	90091072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_90090900_90091100
ES_00052683	chr7	+	235	1	Intergenic	novelGene_3765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATACATTTGCGTATACA	NA	False	NA	NA	False	NA	NA	NA	96402218	96402453	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_96402200_96402500
ES_00052684	chr7	+	208	1	Intergenic	novelGene_3771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCGTGATTTCAAAGGA	4982	False	NA	NA	False	NA	NA	NA	99386507	99386715	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_99386500_99386700
ES_00052685	chr7	+	229	1	Intergenic	novelGene_3772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCACCAGCCCTGTAAT	5	True	NA	NA	False	NA	NA	NA	100178696	100178925	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_100178700_100178900
ES_00052686	chr7	+	279	1	Intergenic	novelGene_3775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGCTGAGTCATCTCTC	NA	False	NA	NA	False	NA	NA	NA	101270945	101271224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_101270900_101271200
ES_00052688	chr7	+	207	1	Intergenic	novelGene_3778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACAAGAGGGTCAGATGT	NA	False	NA	NA	False	NA	NA	NA	101851475	101851682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_101851500_101851700
ES_00052689	chr7	+	315	1	Intergenic	novelGene_3783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTCTTCTTCTACGTA	NA	False	NA	NA	False	NA	NA	NA	103906716	103907031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_103906700_103907000
ES_00052690	chr7	+	311	1	Intergenic	novelGene_3785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGTACATTTCATGGT	6638	False	NA	NA	False	NA	NA	NA	104472317	104472628	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_104472300_104472600
ES_00052691	chr7	+	210	1	Intergenic	novelGene_3786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAATATTCTATCTTT	NA	False	NA	NA	False	NA	NA	NA	104481296	104481506	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_104481300_104481500
ES_00052692	chr7	+	2397	1	Intergenic	novelGene_3787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAAATGTTCTGTAG	NA	False	NA	NA	False	AAAACA	-8	NA	104901090	104903487	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_104901100_104903500
ES_00052693	chr7	+	315	1	Intergenic	novelGene_3789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGATGCTCAGATTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	105801956	105802271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_105802000_105802300
ES_00052694	chr7	+	554	1	Intergenic	novelGene_3790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGTCCTAGGAGAAATAT	7634	False	NA	NA	False	NA	NA	NA	106291705	106292259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_106291700_106292300
ES_00052696	chr7	+	268	1	Intergenic	novelGene_3793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCGGCGTGACTGCCGCG	NA	False	NA	NA	False	AATGAA	-33	NA	107551642	107551910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_107551600_107551900
ES_00052697	chr7	+	218	1	Intergenic	novelGene_3795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTTTTTTTTTTTTTT	7968	False	NA	NA	False	NA	NA	NA	107870931	107871149	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_107870900_107871100
ES_00052698	chr7	+	299	1	Intergenic	novelGene_3796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTCTTCAGGTCCCAG	NA	False	NA	NA	False	NA	NA	NA	108155211	108155510	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_108155200_108155500
ES_00052701	chr7	+	374	1	Intergenic	novelGene_3799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGGCGGTAGTGTACGC	NA	False	NA	NA	False	NA	NA	NA	109584074	109584448	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_109584100_109584400
ES_00052702	chr7	+	336	1	Intergenic	novelGene_3801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAGTCTTTAAAAACAT	3754	False	NA	NA	False	NA	NA	NA	109707469	109707805	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_109707500_109707800
ES_00052703	chr7	+	222	1	Intergenic	novelGene_3803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAGCTTTAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	109715516	109715738	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_109715500_109715700
ES_00052704	chr7	+	221	1	Intergenic	novelGene_3804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAAGAGCATTGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	109766851	109767072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_109766900_109767100
ES_00052707	chr7	+	208	1	Intergenic	novelGene_3805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACTGAGCCATCTCAC	NA	False	NA	NA	False	NA	NA	NA	112423441	112423649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_112423400_112423600
ES_00052708	chr7	+	211	1	Intergenic	novelGene_3812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAGACATTTTCCTATT	NA	False	NA	NA	False	AAGAAA	-30	NA	120113296	120113507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_120113300_120113500
ES_00052710	chr7	+	274	1	Intergenic	novelGene_3815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTACACACATAAGAAGTAG	NA	False	NA	NA	False	NA	NA	NA	124675259	124675533	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_124675300_124675500
ES_00052712	chr7	+	389	1	Intergenic	novelGene_3816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGCCAATGGCAAAC	NA	False	NA	NA	False	NA	NA	NA	125800360	125800749	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_125800400_125800700
ES_00052713	chr7	+	273	1	Intergenic	novelGene_3817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTTTAAAAAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	125896904	125897177	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_125896900_125897200
ES_00052714	chr7	+	229	1	Intergenic	novelGene_3819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATTCATTTATTTAC	NA	False	NA	NA	False	AAAAAG	-4	NA	126082900	126083129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_126082900_126083100
ES_00052715	chr7	+	257	1	Intergenic	novelGene_3821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	444	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTGAACAATAAGGATTAAA	NA	False	NA	NA	False	NA	NA	NA	126243768	126244025	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_126243800_126244000
ES_00052716	chr7	+	241	1	Intergenic	novelGene_3822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTTGGTGTTAAAAAAA	1256	False	NA	NA	False	ATTAAA	-4	NA	126590667	126590908	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_126590700_126590900
ES_00052717	chr7	+	212	1	Intergenic	novelGene_3823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGCTTTGTTTTGGTTT	8574	False	NA	NA	False	NA	NA	NA	126880934	126881146	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_126880900_126881100
ES_00052718	chr7	+	291	1	Intergenic	novelGene_3824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTGGCTGCTACATCC	NA	False	NA	NA	False	NA	NA	NA	127066093	127066384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_127066100_127066400
ES_00052721	chr7	+	238	1	Intergenic	novelGene_3832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATGCACTTCTAATCTC	NA	False	NA	NA	False	NA	NA	NA	128172300	128172538	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_128172300_128172500
ES_00052722	chr7	+	305	1	Intergenic	novelGene_3833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCATTGTGGAAATGCA	NA	False	NA	NA	False	NA	NA	NA	129945243	129945548	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_129945200_129945500
ES_00052726	chr7	+	201	1	Intergenic	novelGene_3835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	132698013	132698214	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_132698000_132698200
ES_00052727	chr7	+	424	1	Intergenic	novelGene_3836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAACTTCTGAATT	NA	False	NA	NA	False	NA	NA	NA	134864036	134864460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_134864000_134864500
ES_00052729	chr7	+	201	1	Intergenic	novelGene_3837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTTATTATTATAGCT	NA	False	NA	NA	False	NA	NA	NA	136952867	136953068	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_136952900_136953100
ES_00052730	chr7	+	294	1	Intergenic	novelGene_3838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAGAAAGAAACGT	NA	False	NA	NA	False	NA	NA	NA	138866405	138866699	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_138866400_138866700
ES_00052731	chr7	+	205	1	Intergenic	novelGene_3839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTCATGGGATAGAGGG	NA	False	NA	NA	False	AAAAAG	-5	NA	138939290	138939495	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_138939300_138939500
ES_00052733	chr7	+	228	1	Intergenic	novelGene_3840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTATAACCATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	139655537	139655765	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_139655500_139655800
ES_00052734	chr7	+	220	1	Intergenic	novelGene_3842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTTTAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	140936602	140936822	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_140936600_140936800
ES_00052735	chr7	+	200	1	Intergenic	novelGene_3843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTATGAAGACGAAGG	862	False	NA	NA	False	NA	NA	NA	140977260	140977460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_140977300_140977500
ES_00052737	chr7	+	203	1	Intergenic	novelGene_3844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATCTGTATTCCTATCTC	NA	False	NA	NA	False	NA	NA	NA	141255311	141255514	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_141255300_141255500
ES_00052738	chr7	+	221	1	Intergenic	novelGene_3845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAACAAGGAAACAC	NA	False	NA	NA	False	NA	NA	NA	144851638	144851859	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_144851600_144851900
ES_00052739	chr7	+	919	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	-23	52004	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2662	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGAAGAGGCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	3230818	3283640	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_3231707_3283609
ES_00052740	chr7	+	225	2	Antisense	novelGene_ENSMUSG00000107413.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	410	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATATATAAATAATA	NA	False	NA	NA	False	NA	NA	NA	3274900	3327763	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_3274956_3327593
ES_00052741	chr7	+	1898	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203328.4	1898	3	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCGGTGGCCAGAAGTCA	905	False	NA	NA	False	TTTAAA	-38	NA	3337604	3346801	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3337851_3341727_3341816_3345237
ES_00052742	chr7	+	2878	3	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	476	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2707	False	NA	14	True	AATATA	-8	NA	3341535	3347865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3341816_3345237_3346669_3346698
ES_00052743	chr7	+	2762	4	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	427.750965970726	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2707	False	NA	14	True	AATATA	-8	NA	3341535	3347865	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3341614_3341727_3341816_3345237_3346669_3346700
ES_00052744	chr7	+	2300	6	FSM	ENSMUSG00000069806.6	ENSMUST00000092891.6	2212	6	-88	0	-88	0	multi-exon	FALSE	canonical	0	0	junction_5	0.4	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGTGTCTCACCAAAGG	NA	False	NA	15	True	AATAAA	-15	NA	3381382	3416737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3381553_3385071_3385297_3386960_3387048_3387401_3387543_3414462_3414609_3415206
ES_00052746	chr7	+	1941	13	FSM	ENSMUSG00000008373.17	ENSMUST00000108636.2	1798	13	-143	0	-143	0	multi-exon	FALSE	canonical	2	54	junction_8	240.724759262985	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	3362	False	NA	14	True	ATTAAA	-22	NA	3633412	3644228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ES_00052749	chr7	+	381	3	FSM	ENSMUSG00000006333.15	ENSMUST00000128729.2	378	3	-3	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2914.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGGCCTGGAACTCAAA	1309	False	NA	NA	False	NA	NA	NA	3707036	3707876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3707064_3707325_3707448_3707644
ES_00052753	chr7	+	5430	15	NNC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	-47	0	intron_retention	FALSE	canonical	3	74	junction_8	84.8778233578076	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	35	False	NA	16	True	ATTAAA	-16	NA	4139990	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146309_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ES_00052754	chr7	+	5130	16	NNC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_8	108.760082546657	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	114	False	NA	16	True	ATTAAA	-16	NA	4140069	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146257_4146309_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ES_00052756	chr7	+	302	1	FSM	ENSMUSG00000108761.2	ENSMUST00000206596.2	463	1	85	76	85	-76	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATCCTGATCCTCATCTTT	3196	False	NA	NA	False	NA	NA	NA	4415521	4415823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4415500_4415800
ES_00052757	chr7	+	439	1	FSM	ENSMUSG00000108477.2	ENSMUST00000205812.2	1295	1	-41	897	-41	-897	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGCAGGTGCGCGAGAGG	2956	False	NA	NA	False	NA	NA	NA	4661617	4662056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4661600_4662100
ES_00052760	chr7	+	478	2	FSM	ENSMUSG00000030432.13	ENSMUST00000129888.2	478	2	0	0	0	0	multi-exon	FALSE	canonical	3	6649	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	3669	False	NA	17	True	AATAAA	-32	NA	4796848	4797561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_4797182_4797416
ES_00052761	chr7	+	345	1	FSM	ENSMUSG00000109549.2	ENSMUST00000208606.2	529	1	385	-201	385	201	mono-exon	FALSE	NA	NA	NA	NA	NA	979	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGGGATATTTATTATTA	681	False	NA	NA	False	NA	NA	NA	5057855	5058200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5057900_5058200
ES_00052762	chr7	+	1337	6	FSM	ENSMUSG00000035228.16	ENSMUST00000108571.9	1318	6	-19	0	-19	0	multi-exon	FALSE	canonical	1	1	junction_1	6.36867333123626	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGGCCCCAGGTCTTA	1957	False	NA	NA	False	ATTAAA	-21	NA	5059131	5063781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5059240_5060497_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
ES_00052763	chr7	+	507	3	FSM	ENSMUSG00000030435.17	ENSMUST00000207523.2	486	3	-21	0	0	0	multi-exon	FALSE	canonical	3	1693	junction_2	126.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCTTCCCCAGTCG	73	False	NA	NA	False	NA	NA	NA	5065281	5070525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5065336_5069401_5069538_5070208
ES_00052764	chr7	+	904	5	FSM	ENSMUSG00000030435.17	ENSMUST00000207960.2	904	5	0	0	0	0	multi-exon	FALSE	canonical	3	1693	junction_2	134.511151954029	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTGTTTTTGGTAGT	73	False	NA	NA	False	NA	NA	NA	5065281	5071595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030
ES_00052765	chr7	+	2062	13	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	0	32008	intron_retention	FALSE	non_canonical	0	0	junction_12	503.363437289599	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTCAGGTGTGGTGTT	73	False	NA	NA	False	AAAAAG	-9	NA	5065281	5114945	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180_5082932_5114920
ES_00052766	chr7	+	2446	11	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	44.445584707595	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1323	False	NA	21	True	AATAAA	-15	NA	5083248	5101177	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ES_00052769	chr7	+	360	1	FSM	ENSMUSG00000109108.2	ENSMUST00000209043.2	1103	1	-142	885	-142	-885	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGTATCATCATCACGT	3567	False	NA	NA	False	NA	NA	NA	6159372	6159732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6159400_6159700
ES_00052770	chr7	+	975	8	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-246	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	27.8333231496173	830	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGATTCAGTGCGTATTC	2966	False	NA	9	True	AATAAA	-24	NA	6263288	6284861	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269883_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ES_00052772	chr7	+	3465	4	FSM	ENSMUSG00000055150.16	ENSMUST00000207314.2	4675	4	5	1205	5	-309	multi-exon	FALSE	canonical	2	4	junction_1	3.39934634239519	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTAACCCAACTTCCA	3059	False	NA	NA	False	NA	NA	NA	6366383	6384399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_6366439_6374304_6374396_6376125_6376253_6381207
ES_00052775	chr7	+	1103	8	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	154.398107210562	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTCTTGCTTGAGTGAG	2917	False	NA	18	True	ATTAAA	-19	NA	6998504	7006088	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_6998525_6998614_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ES_00052776	chr7	+	3416	4	FSM	ENSMUSG00000030386.20	ENSMUST00000123589.8	3509	4	-2	95	-2	-95	multi-exon	FALSE	canonical	3	113	junction_3	4.98887651569859	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAACCGCTATGCTGTA	NA	False	NA	NA	False	NA	NA	NA	12212229	12217733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861
ES_00052777	chr7	+	728	1	FSM	ENSMUSG00000098135.2	ENSMUST00000182237.2	987	1	506	-247	506	247	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATATTCATAGGACAGGAA	NA	False	NA	NA	False	ATTAAA	-16	NA	12477118	12477846	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12477100_12477800
ES_00052778	chr7	+	2620	3	FSM	ENSMUSG00000054715.12	ENSMUST00000055528.11	2620	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCCTTGTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	12631741	12642166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12631871_12637527_12638013_12640160
ES_00052782	chr7	+	4557	6	FSM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	-2	60	-2	-60	multi-exon	FALSE	canonical	2	6	junction_1	10.7962956610126	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTAACATGAAATCCTG	NA	False	NA	NA	False	NA	NA	NA	12711772	12719581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12712040_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
ES_00052787	chr7	+	304	1	FSM	ENSMUSG00000099400.2	ENSMUST00000187624.2	3433	1	1484	1645	1484	-1645	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGGATGCTGAGCTCA	NA	False	NA	NA	False	NA	NA	NA	13389404	13389708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_13389400_13389700
ES_00052788	chr7	+	220	1	FSM	ENSMUSG00000098520.2	ENSMUST00000184001.2	403	1	96	87	96	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-24	NA	14350404	14350624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_14350400_14350600
ES_00052789	chr7	+	1847	12	FSM	ENSMUSG00000041420.19	ENSMUST00000175946.8	1925	12	78	0	36	0	multi-exon	FALSE	canonical	3	10	junction_3	3.73723723474445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAATTCTCATTTGT	7730	False	NA	NA	False	AATAAA	-14	NA	15909390	15920426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
ES_00052790	chr7	+	1734	4	NIC	ENSMUSG00000002083.14	novel	485	3	NA	NA	-82	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	92.4589999224882	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16044297	16052130	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_16044464_16046050_16046340_16047551_16047743_16051042
ES_00052792	chr7	+	7188	14	NIC	ENSMUSG00000059273.10	novel	333	2	NA	NA	-1117	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	34.2757699018835	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGAGTCTAGTCTCAT	3364	False	NA	17	True	ATTAAA	-21	NA	16133717	16171620	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_16134967_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
ES_00052793	chr7	+	894	1	FSM	ENSMUSG00000099423.2	ENSMUST00000189720.2	798	1	-80	-16	-80	16	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCTGTACATAAATATA	NA	False	NA	NA	False	NA	NA	NA	16232576	16233470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16232600_16233500
ES_00052794	chr7	+	1063	3	FSM	ENSMUSG00000008036.12	ENSMUST00000141496.2	1054	3	-9	0	-9	0	multi-exon	FALSE	canonical	3	608	junction_1	4.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTCTGAGCCCTCAT	NA	False	NA	19	True	AATAAA	-19	NA	16480679	16483219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16481300_16482613_16482674_16482836
ES_00052798	chr7	+	4051	1	FSM	ENSMUSG00000070802.6	ENSMUST00000094807.6	4147	1	88	8	88	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTGATTTTTCTCTGTG	NA	False	NA	NA	False	AATGAA	-17	NA	16678694	16682745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16678700_16682700
ES_00052799	chr7	+	1383	1	ISM	ENSMUSG00000030411.17	ENSMUST00000032571.10	8372	4	31689	6360	31689	-6360	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTCCCTCCTTTTTT	NA	False	NA	10	True	AATAGA	-20	NA	18691501	18692884	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_18691500_18692900
ES_00052802	chr7	+	2028	2	FSM	ENSMUSG00000044317.8	ENSMUST00000060225.6	2882	2	24	830	24	-830	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCTCTCTGTCATCT	NA	False	NA	NA	False	AAGAAA	-13	NA	18946486	18957269	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18946560_18955314
ES_00052803	chr7	+	1390	2	FSM	ENSMUSG00000052214.10	ENSMUST00000161711.2	1390	2	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTGTCTCAAACCATT	3282	False	NA	NA	False	ATTAAA	-14	NA	18962307	18990468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18962510_18989280
ES_00052805	chr7	+	903	8	FSM	ENSMUSG00000003549.10	ENSMUST00000160192.8	1179	8	-19	295	-19	0	multi-exon	FALSE	canonical	3	316	junction_1	42.4951377770902	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCCTGGGCATCCCCTCC	1015	False	NA	NA	False	NA	NA	NA	19079006	19089104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025
ES_00052807	chr7	+	4142	14	NIC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	233	-11	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	14.9634663578927	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTACCCAGAAATGAACA	951	False	NA	NA	False	AATAAA	-4	NA	19093927	19112447	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_19094762_19094951_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ES_00052810	chr7	+	2201	4	ISM	ENSMUSG00000011263.17	ENSMUST00000137613.9	4016	12	25725	2	0	0	3prime_fragment	TRUE	canonical	2	4	junction_2	2.94392028877595	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGATTCCCACTGCTC	NA	False	NA	NA	False	AATAAA	-17	NA	19222980	19230685	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_19223100_19223532_19223689_19225580_19225703_19228881
ES_00052811	chr7	+	2672	7	NNC	ENSMUSG00000002043.18	novel	785	6	NA	NA	-2601	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	196.652824371615	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACAGACCTGTGCAGTG	NA	False	NA	12	True	AGTAAA	-13	NA	19239718	19250061	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_19241419_19242440_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ES_00052813	chr7	+	3192	10	NIC	ENSMUSG00000060508.17	novel	3346	10	NA	NA	185	-1	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	7.83786315046595	1499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAATGTTTCCTCAATG	NA	False	NA	0	True	AATAAA	-19	NA	19725574	19796864	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_19725614_19741948_19742019_19753060_19753368_19757035_19758615_19762379_19762545_19776275_19776444_19779686_19779858_19782606_19782778_19783348_19783520_19796513
ES_00052815	chr7	+	1428	4	NNC	ENSMUSG00000064264.15	novel	1159	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	89.1777251709566	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206494	24215105	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214461
ES_00052826	chr7	+	1541	1	FSM	ENSMUSG00000090330.3	ENSMUST00000190693.2	1541	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACTGCCTCCCTGGAT	9309	False	NA	7	True	TATAAA	-17	NA	24928147	24929688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24928100_24929700
ES_00052827	chr7	+	8209	21	FSM	ENSMUSG00000005442.14	ENSMUST00000169266.8	8221	21	0	12	0	-1	multi-exon	TRUE	canonical	1	1	junction_1	31.7370446009076	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGCTGCTGGCTTGTTT	NA	False	NA	14	True	ATTAAA	-16	NA	24967128	24993572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24967182_24970259_24973059_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ES_00052829	chr7	+	5580	20	NIC	ENSMUSG00000005442.14	novel	6096	20	NA	NA	-118	0	intron_retention	FALSE	canonical	3	37	junction_13	27.6930144096199	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGGGCTGCTGGCTTGT	372	False	NA	12	True	ATTAAA	-14	NA	24982116	24993570	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ES_00052830	chr7	+	745	4	FSM	ENSMUSG00000005442.14	ENSMUST00000168956.2	745	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGGCACCGGGCCTTGGT	2350	False	NA	NA	False	NA	NA	NA	24984094	24985109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24984424_24984503_24984739_24984834_24984965_24985058
ES_00052831	chr7	+	5693	18	FSM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	-24	0	-24	0	multi-exon	FALSE	canonical	3	20	junction_12	6.55242367795027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGCATCGTAACTTCAT	NA	False	NA	8	True	AATAAA	-13	NA	25045381	25065339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ES_00052833	chr7	+	373	3	FSM	ENSMUSG00000002603.16	ENSMUST00000171757.2	495	3	0	122	0	-122	multi-exon	FALSE	canonical	3	26	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTGTGTGAAATCTCAC	NA	False	NA	NA	False	NA	NA	NA	25391842	25396477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_25391963_25393647_25393766_25396342
ES_00052834	chr7	+	210	1	ISM	ENSMUSG00000097017.2	ENSMUST00000181552.2	3902	2	1686	2105	1686	-2105	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCCTGGTCTTAGAGCT	NA	False	NA	NA	False	NA	NA	NA	25517764	25517974	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_25517800_25518000
ES_00052835	chr7	+	890	6	FSM	ENSMUSG00000078786.10	ENSMUST00000155931.2	890	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	6.8	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACATTTTCAGTCCAGT	NA	False	NA	10	True	NA	NA	NA	26896547	26903586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903335
ES_00052837	chr7	+	316	1	FSM	ENSMUSG00000040466.17	ENSMUST00000207799.2	1504	1	-126	1314	-43	-1314	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCGTCCTGGGGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	27147359	27147675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27147400_27147700
ES_00052838	chr7	+	529	3	FSM	ENSMUSG00000040466.17	ENSMUST00000133750.8	509	3	-22	2	0	-2	multi-exon	FALSE	canonical	2	274	junction_1	60	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCACTGAGCACCAACTG	NA	False	NA	7	True	ATTAAA	-20	NA	27147456	27159186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27147622_27158680_27158846_27158987
ES_00052839	chr7	+	951	4	FSM	ENSMUSG00000040466.17	ENSMUST00000108358.8	951	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	187.642094306037	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTGATTATTTTGGT	NA	False	NA	60	True	NA	NA	NA	27147456	27165423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27147622_27158680_27159059_27161991_27162121_27165144
ES_00052840	chr7	+	2356	4	FSM	ENSMUSG00000040424.16	ENSMUST00000108353.9	2409	4	53	0	53	0	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTCCTGCCTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	27222744	27230600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27223407_27227720_27228078_27228373_27229223_27230112
ES_00052841	chr7	+	2013	11	FSM	ENSMUSG00000049643.16	ENSMUST00000187960.7	1989	11	-24	0	-5	0	multi-exon	FALSE	canonical	3	17	junction_10	97.3365296278843	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	425	False	NA	NA	False	AATAAA	-20	NA	27252686	27281524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761_27280117_27280775
ES_00052843	chr7	+	4149	4	FSM	ENSMUSG00000004056.16	ENSMUST00000136981.2	770	4	0	-3379	0	-4	multi-exon	FALSE	canonical	3	428	junction_2	60.8294519309703	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGCTGTGCTTGTACTTT	NA	False	NA	2	True	AATAAA	-13	NA	27335477	27340247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27335593_27335688_27335904_27336347_27336436_27336516
ES_00052845	chr7	+	1412	10	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-773	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	827.085915193284	999	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	7758	False	NA	0	True	ATTAAA	-14	NA	27868361	27878694	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_27868440_27868997_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ES_00052847	chr7	+	2523	11	FSM	ENSMUSG00000002409.19	ENSMUST00000085901.13	2534	11	11	0	11	0	multi-exon	TRUE	canonical	2	7	junction_5	4.15210789840534	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCCTGAGCGTTTGCA	NA	False	NA	NA	False	AGTAAA	-14	NA	27878904	27886719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492_27884640_27884720_27884862_27885138_27885455_27885786_27885894_27885976
ES_00052849	chr7	+	628	4	FSM	ENSMUSG00000037563.16	ENSMUST00000152918.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	20184	junction_3	558.517283130572	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28050277_28050416_28050519_28051601_28051836_28051918
ES_00052850	chr7	+	714	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	0	10195	intron_retention	FALSE	non_canonical	0	0	junction_4	8855.79201356378	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGAGACAGGGTTTTACT	NA	False	NA	NA	False	NA	NA	NA	28050187	28062775	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_28050519_28051601_28051699_28051787_28051836_28051918_28052120_28062738
ES_00052851	chr7	+	536	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	8852.34122633668	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050192	28052121	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_28050279_28050416_28050519_28051601_28051699_28051787_28051836_28051918
ES_00052856	chr7	+	1354	10	FSM	ENSMUSG00000053964.18	ENSMUST00000066723.15	1384	10	23	7	23	0	multi-exon	FALSE	canonical	2	5	junction_3	2.77999911182151	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	28533301	28541126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28533652_28533872_28533962_28535251_28535457_28537040_28537182_28539686_28539720_28539838_28539878_28540005_28540036_28540288_28540378_28540569_28540733_28540911
ES_00052860	chr7	+	1246	1	FSM	ENSMUSG00000099098.5	ENSMUST00000184073.2	1241	1	-5	0	-5	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGTGTGTGTGTATGTGT	NA	False	NA	NA	False	AATAAA	-23	NA	28855099	28856345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28855100_28856300
ES_00052861	chr7	+	1068	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	0	18	0	-18	multi-exon	FALSE	canonical	3	48	junction_5	686.982471877316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGCAAGTTTAATAAGTC	6160	False	NA	6	True	NA	NA	NA	28937876	28947000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
ES_00052862	chr7	+	2044	12	FSM	ENSMUSG00000030584.15	ENSMUST00000108231.8	2040	12	-4	0	-4	0	multi-exon	TRUE	canonical	3	12	junction_10	19.1570283587301	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	1760	False	NA	NA	False	NA	NA	NA	29003371	29016689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015638_29015751_29015905
ES_00052863	chr7	+	1581	6	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	45	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	18.5321342537766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTTCCATCTCTAACCT	NA	False	NA	9	True	ATTAAA	-25	NA	29012324	29017012	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ES_00052864	chr7	+	3272	4	FSM	ENSMUSG00000047473.15	ENSMUST00000126504.2	3707	4	0	435	0	-435	multi-exon	FALSE	canonical	1	3	junction_1	10.7806410858642	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAGATCAAAACTTAGATAA	NA	False	NA	NA	False	NA	NA	NA	29483447	29490902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29484327_29485599_29485729_29487473_29487601_29488765
ES_00052867	chr7	+	3130	4	FSM	ENSMUSG00000099689.7	ENSMUST00000187028.7	3208	4	78	0	78	0	multi-exon	FALSE	canonical	3	26	junction_3	4.02768199119819	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCATAATTTTCTTTATG	NA	False	NA	33	True	AATAAA	-30	NA	29607725	29616238	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29608077_29609607_29609673_29611593_29612111_29614041
ES_00052869	chr7	+	4824	3	ISM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	15	0	15	0	intron_retention	FALSE	canonical	3	27	junction_1	4	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGTTTCATAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	29607956	29616232	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_29608077_29609607_29609673_29611593
ES_00052870	chr7	+	853	5	FSM	ENSMUSG00000063623.5	ENSMUST00000239012.2	809	5	267	-311	192	-111	multi-exon	FALSE	canonical	1	1	junction_1	40.4722126896961	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTTCTGAGAGGACATT	NA	False	NA	NA	False	NA	NA	NA	29653354	29665084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29653382_29656384_29656460_29660317_29660445_29662570_29662667_29664556
ES_00052871	chr7	+	1050	4	ISM	ENSMUSG00000074221.13	ENSMUST00000148442.8	4005	10	-44	35616	-44	243	5prime_fragment	FALSE	canonical	3	18	junction_2	110.996496441204	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGAATATTCATGTT	NA	False	NA	NA	False	AAGAAA	-15	NA	29683335	29688920	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_29683654_29684684_29684752_29687013_29687232_29688473
ES_00052872	chr7	+	1010	4	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	13	253	combination_of_known_junctions	FALSE	canonical	3	234	junction_3	16.0485374896143	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATGTTTCTTTGGAAT	NA	False	NA	NA	False	AAGAAA	-25	NA	29683392	29688930	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473
ES_00052873	chr7	+	2139	3	NNC	ENSMUSG00000074220.11	novel	730	4	NA	NA	4851	-1	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	9.5	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTTGAAAATGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	29829890	29834374	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_29830253_29830956_29831050_29832690
ES_00052874	chr7	+	370	1	FSM	ENSMUSG00000108926.2	ENSMUST00000209150.2	1088	1	47	671	47	-671	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAACAAGTGTGGGAGAGC	NA	False	NA	NA	False	NA	NA	NA	29851312	29851682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29851300_29851700
ES_00052875	chr7	+	769	5	FSM	ENSMUSG00000019738.16	ENSMUST00000149654.8	604	5	0	-165	0	-41	multi-exon	FALSE	canonical	3	11	junction_1	529.537534080446	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGCCATGCGCCTGTACTA	NA	False	NA	-88	True	NA	NA	NA	29931456	29932709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29931804_29931906_29931962_29932174_29932249_29932331_29932407_29932491
ES_00052876	chr7	+	488	6	FSM	ENSMUSG00000019738.16	ENSMUST00000108193.2	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	479.289724488226	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTAGTGTTTCCCGTGTTT	NA	False	NA	13	True	AATAAA	-13	NA	29931756	29932810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29931830_29931906_29931962_29932116_29932249_29932331_29932407_29932491_29932544_29932709
ES_00052877	chr7	+	508	5	FSM	ENSMUSG00000019738.16	ENSMUST00000108192.2	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.0672063403024	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTTTCCCGTGTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29931756	29932811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ES_00052878	chr7	+	607	4	FSM	ENSMUSG00000042831.14	ENSMUST00000139121.8	427	4	-108	-72	-12	72	multi-exon	FALSE	canonical	3	16	junction_3	198.031983948721	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTCTTGCTGTGGCG	NA	False	NA	NA	False	NA	NA	NA	30008129	30010547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30010218
ES_00052882	chr7	+	1250	8	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	69.7438461918516	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014280	30018471	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_30014512_30014686_30014826_30015719_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ES_00052884	chr7	+	2784	10	NIC	ENSMUSG00000006649.18	novel	3877	29	NA	NA	5953	-4489	intron_retention	FALSE	canonical	3	34	junction_3	9.82061324177082	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCCTCCCTTCTCTTCGC	NA	False	NA	NA	False	NA	NA	NA	30165102	30177473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_30165307_30165433_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283
ES_00052887	chr7	+	805	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	-24	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGGTTTCCTTCC	NA	False	NA	33	True	AATAAA	-21	NA	30262725	30264787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ES_00052896	chr7	+	2883	11	FSM	ENSMUSG00000109378.2	ENSMUST00000108161.9	2890	11	0	7	0	-2	multi-exon	FALSE	canonical	1	1	junction_9	272.411453503703	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCAGTATCTGCCTGTCC	NA	False	NA	NA	False	AATAAA	-11	NA	30262774	30267378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263820_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266362_30266567_30266926_30267005
ES_00052900	chr7	+	2190	4	FSM	ENSMUSG00000046056.16	ENSMUST00000080518.14	2221	4	20	11	-2	-6	multi-exon	FALSE	canonical	0	0	junction_1	7.87400787401181	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCCTTTTCATCGTGG	8756	False	NA	8	True	AATAAA	-10	NA	30450977	30455545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30452895_30454233_30454306_30454426_30454472_30455389
ES_00052901	chr7	+	220	2	Intergenic	novelGene_3680	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTTTGATATACATTAT	219	False	NA	NA	False	NA	NA	NA	30465967	30502587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_30465998_30502397
ES_00052902	chr7	+	524	1	FSM	ENSMUSG00000085105.3	ENSMUST00000205940.2	1112	1	588	0	588	0	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGCAGTGGTGGCGCAC	NA	False	NA	NA	False	NA	NA	NA	33934453	33934977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_33934500_33935000
ES_00052908	chr7	+	3637	6	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2077	1759	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	4.2142615011411	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAGAATACACACAGT	NA	False	NA	NA	False	NA	NA	NA	39136784	39149984	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_39136816_39136923_39136985_39138848_39138976_39143154_39143248_39145691_39145802_39146769
ES_00052910	chr7	+	1056	1	Intergenic	novelGene_3690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGCTCATGCTATAGC	NA	False	NA	NA	False	NA	NA	NA	39239905	39240961	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_39239900_39241000
ES_00052911	chr7	+	209	1	Intergenic	novelGene_3692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAATCAGGCCAGGAAGTA	NA	False	NA	NA	False	AAAAAG	-4	NA	41173938	41174147	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_41173900_41174100
ES_00052913	chr7	+	904	6	NNC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_2	54.3080104588632	141	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTACAATAATGATAGA	NA	False	NA	NA	False	NA	NA	NA	41248747	41274950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_41248825_41261099_41261320_41261794_41261922_41262579_41262676_41274146_41274257_41274676
ES_00052914	chr7	+	3177	6	FSM	ENSMUSG00000074165.11	ENSMUST00000100275.10	3177	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	15.7733953225043	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTGGTGAAAATTTT	NA	False	NA	0	True	TATAAA	-13	NA	41282954	41300302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ES_00052915	chr7	+	2997	4	NIC	ENSMUSG00000074165.11	novel	3177	6	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	18.4028983224563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTGGTGAAAATTTT	NA	False	NA	0	True	TATAAA	-13	NA	41283003	41300302	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_41283119_41296906_41297042_41297242_41297304_41297616
ES_00052916	chr7	+	400	4	FSM	ENSMUSG00000107181.2	ENSMUST00000201257.2	378	4	-22	0	-22	0	multi-exon	FALSE	canonical	2	4	junction_3	50.8002624665136	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCTAGAACTATTTAT	NA	False	NA	NA	False	NA	NA	NA	42727452	42745843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42727598_42741712_42741840_42742038_42742100_42745776
ES_00052917	chr7	+	378	4	NNC	ENSMUSG00000064194.11	novel	595	4	NA	NA	-57	-43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	207.220226383001	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAGACATAGTGGAGA	NA	False	NA	NA	False	NA	NA	NA	42763595	42839035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_42763707_42836593_42836721_42836916_42836978_42838956
ES_00052922	chr7	+	5908	5	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	76667	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	68.710897971137	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	42827011	42918200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_42827128_42906867_42906982_42910109_42910237_42910431_42910493_42912710
ES_00052924	chr7	+	784	3	NNC	ENSMUSG00000074887.5	novel	1428	4	NA	NA	0	14148	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	1	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGTGTGCATTTGGCC	9998	False	NA	1	True	NA	NA	NA	42863462	42890414	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_42863572_42884606_42884794_42889926
ES_00052925	chr7	+	2433	9	FSM	ENSMUSG00000039013.17	ENSMUST00000122423.8	2607	9	113	61	-1	0	multi-exon	TRUE	canonical	1	1	junction_3	3.38886042793149	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTGTGCAGCAATTCT	NA	False	NA	NA	False	AATAAA	-14	NA	43000944	43008894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43001009_43001070_43001434_43001591_43001871_43002045_43002094_43004399_43004652_43004750_43005054_43005323_43005424_43005724_43005861_43008006
ES_00052926	chr7	+	243	2	Intergenic	novelGene_3704	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGCACTGGGCAGT	NA	False	NA	NA	False	NA	NA	NA	43205630	43206080	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_43205802_43206008
ES_00052928	chr7	+	239	2	Intergenic	novelGene_3705	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGCACTGGGCAGT	NA	False	NA	NA	False	NA	NA	NA	43205630	43206080	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_43205798_43206008
ES_00052930	chr7	+	3255	4	FSM	ENSMUSG00000056592.15	ENSMUST00000005597.9	2664	4	-95	-496	-95	1	multi-exon	FALSE	canonical	2	5	junction_3	0.471404520791032	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGTACATTATTTCTT	76	False	NA	NA	False	TTTAAA	-5	NA	43214112	43224886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43214268_43216691_43216819_43217068_43217168_43222012
ES_00052931	chr7	+	2550	4	FSM	ENSMUSG00000055102.16	ENSMUST00000120935.2	2156	4	-54	-340	-54	271	multi-exon	FALSE	canonical	2	5	junction_1	36.4630711207319	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTACCATAGTCTACT	2782	False	NA	NA	False	NA	NA	NA	43256538	43267980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43256699_43261406_43261534_43261970_43262064_43265810
ES_00052932	chr7	+	2175	4	NIC	ENSMUSG00000055102.16	novel	2156	4	NA	NA	20	-4	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	35.6121078036982	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTGCTTATTTTAAAT	2856	False	NA	3	True	AATAAA	-11	NA	43256612	43267636	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_43256742_43261406_43261534_43261970_43262064_43265810
ES_00052933	chr7	+	1803	6	FSM	ENSMUSG00000054046.8	ENSMUST00000066834.8	1809	6	0	6	0	-6	multi-exon	FALSE	canonical	2	4	junction_1	24.8161237907938	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCCTTTTTTTGTTTTG	NA	False	NA	11	True	CATAAA	-15	NA	43361990	43376952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43362129_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ES_00052935	chr7	+	4201	3	FSM	ENSMUSG00000045411.17	ENSMUST00000071296.11	4201	3	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_2	56.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896865	43901736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43899024_43899444_43899484_43899732
ES_00052937	chr7	+	215	1	Intergenic	novelGene_3707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGACCCCTTTCTTGCCC	31	False	NA	NA	False	NA	NA	NA	44012712	44012927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_44012700_44012900
ES_00052939	chr7	+	488	6	FSM	ENSMUSG00000066500.6	ENSMUST00000207182.2	490	6	1	1	1	-1	multi-exon	FALSE	canonical	1	3	junction_3	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAATGTCTGTACATTCC	502	False	NA	NA	False	AATAAA	-23	NA	44358479	44369266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369166
ES_00052940	chr7	+	2207	4	FSM	ENSMUSG00000011096.18	ENSMUST00000152091.8	2207	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	106.948585778401	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCGTGTTGTGTGTGAGT	1520	False	NA	15	True	ATTAAA	-20	NA	44498767	44504841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44499431_44501994_44502384_44503203_44503533_44504015
ES_00052942	chr7	+	1757	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107880.9	1757	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	128.154203988788	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	2183	False	NA	19	True	ATTAAA	-24	NA	44499430	44504845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44499721_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ES_00052945	chr7	+	1342	8	NIC	ENSMUSG00000003184.16	novel	2031	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	54.0181375435461	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647096	44651814	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650241_44651096_44651213_44651587
ES_00052948	chr7	+	2773	13	FSM	ENSMUSG00000094152.6	ENSMUST00000213347.2	2865	13	91	1	91	1	multi-exon	FALSE	canonical	0	0	junction_4	6.56326053794064	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGTGAGGCTCGATTTC	NA	False	NA	NA	False	AATAAA	-20	NA	44890599	44922790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44890728_44906859_44906961_44908426_44908903_44909283_44909442_44909624_44909752_44909899_44910076_44910240_44910352_44910496_44910739_44917438_44917623_44917871_44918074_44918196_44918357_44921914_44922078_44922245
ES_00052949	chr7	+	201	1	Intergenic	novelGene_3712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGTGGTGGTGCACACCT	NA	False	NA	NA	False	NA	NA	NA	45053536	45053737	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45053500_45053700
ES_00052950	chr7	+	2118	2	FSM	ENSMUSG00000038201.11	ENSMUST00000107774.3	2182	2	-8	72	-8	-72	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGTGCCTGAACTCCT	NA	False	NA	NA	False	GGGGCT	-8	NA	45055068	45059115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45056440_45058368
ES_00052953	chr7	+	945	6	ISM	ENSMUSG00000023467.19	ENSMUST00000210868.2	1664	11	4960	-14	3789	14	3prime_fragment	FALSE	canonical	3	4	junction_5	28.0756121927911	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTGTGGAATTCTATTG	5073	False	NA	NA	False	AATAAA	-24	NA	45169020	45173070	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45172884
ES_00052954	chr7	+	578	2	FSM	ENSMUSG00000040428.20	ENSMUST00000211106.2	1457	2	879	0	879	0	multi-exon	FALSE	canonical	3	20	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	NA	False	NA	8	True	AATAAA	-17	NA	45202992	45203653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45203106_45203188
ES_00052955	chr7	+	1211	5	ISM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	3163	-3	1	0	3prime_fragment	FALSE	canonical	3	557	junction_3	22.2864869371554	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45208630	45216745	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ES_00052956	chr7	+	632	4	FSM	ENSMUSG00000030826.20	ENSMUST00000209543.2	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_3	41.8754767800386	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAGCTCATTGAAGTAGA	4149	False	NA	NA	False	NA	NA	NA	45224645	45234567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45224930_45225222_45225427_45234340_45234452_45234534
ES_00052957	chr7	+	2597	2	FSM	ENSMUSG00000008461.7	ENSMUST00000008605.6	2580	2	-17	0	-17	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTGTATCTGATGTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	45267012	45270483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45267172_45268045
ES_00052959	chr7	+	1586	2	FSM	ENSMUSG00000042918.18	ENSMUST00000210169.2	536	2	-468	-582	-468	-150	multi-exon	FALSE	canonical	3	12	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCTCATGTCTTATTGAA	NA	False	NA	NA	False	NA	NA	NA	45293339	45295015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45293853_45293942
ES_00052960	chr7	+	1064	6	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-10	0	intron_retention	FALSE	canonical	3	16	junction_2	4.16653333119993	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350656	45354033	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136_45353303_45353912
ES_00052961	chr7	+	1156	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	20	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATCAACACAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	45354692	45359538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45355187_45357683_45357896_45359088
ES_00052969	chr7	+	928	2	FSM	ENSMUSG00000030835.7	ENSMUST00000182305.2	885	2	552	-595	552	187	multi-exon	FALSE	canonical	3	352	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGGAGGGGTGTCTGTC	6753	False	NA	NA	False	TTTAAA	-13	NA	45732620	45733823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45732752_45733026
ES_00052970	chr7	+	2789	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGCCTCTCTTGGAGTC	4720	False	NA	2	True	AATAAA	-13	NA	46445540	46473222	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ES_00052971	chr7	+	713	6	FSM	ENSMUSG00000006599.14	ENSMUST00000144708.2	739	6	25	1	25	-1	multi-exon	FALSE	canonical	3	522	junction_1	38.5092196752933	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGACTTCTACTGTTT	NA	False	NA	NA	False	AAGAAA	-30	NA	46457900	46464841	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723
ES_00052973	chr7	+	1815	8	FSM	ENSMUSG00000063229.16	ENSMUST00000209984.2	1815	8	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	18	True	AATAAA	-14	NA	46496505	46505050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ES_00052976	chr7	+	2369	17	NIC	ENSMUSG00000030471.18	novel	2410	17	NA	NA	7	0	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	63.8620339090449	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438786	48477188	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_48438886_48445653_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ES_00052977	chr7	+	1647	1	FSM	ENSMUSG00000109051.2	ENSMUST00000208060.2	2990	1	-21	1364	-21	-1364	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCACAGTGTGCTTGCATG	4977	False	NA	NA	False	NA	NA	NA	48995820	48997467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_48995800_48997500
ES_00052979	chr7	+	993	3	FSM	ENSMUSG00000039745.9	ENSMUST00000208048.2	983	3	-18	8	-18	-8	multi-exon	FALSE	canonical	3	26	junction_1	102	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGCTTGAAGCATTGTCTC	9862	False	NA	NA	False	AATAAA	-6	NA	49408844	49412499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_49408894_49409289_49409542_49411807
ES_00052982	chr7	+	2937	2	FSM	ENSMUSG00000030505.18	ENSMUST00000207216.2	2937	2	0	0	0	0	multi-exon	FALSE	canonical	3	542	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCTCCCTCCAAAGATT	NA	False	NA	NA	False	AATAAA	-12	NA	49433948	49437891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_49435975_49436980
ES_00052984	chr7	+	312	1	FSM	ENSMUSG00000109059.2	ENSMUST00000209075.2	468	1	199	-43	199	43	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTACACCACTGGT	NA	False	NA	NA	False	AATAAA	-22	NA	51108006	51108318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_51108000_51108300
ES_00052985	chr7	+	918	2	NIC	ENSMUSG00000030498.16	novel	1857	10	NA	NA	-168	3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	0	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTCATGATGTTTTATC	437	False	NA	NA	False	NA	NA	NA	51511594	51514148	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_51512394_51514029
ES_00052987	chr7	+	334	1	FSM	ENSMUSG00000074092.6	ENSMUST00000117187.2	264	1	125	-195	125	195	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGCGGGTAAGAGCATT	NA	False	NA	NA	False	NA	NA	NA	52405337	52405671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_52405300_52405700
ES_00052988	chr7	+	2339	14	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	16	10073	-10	-750	5prime_fragment	FALSE	canonical	3	83	junction_7	5.82384407099929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCACCGTGTATAGCAC	NA	False	NA	NA	False	AATAAA	-14	NA	55443928	55466774	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205
ES_00052989	chr7	+	3550	23	NIC	ENSMUSG00000033790.12	novel	3905	23	NA	NA	12	-8	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	20.4636848268882	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATCCCATTTTTCTACCT	NA	False	NA	7	True	AATAAA	-10	NA	55443950	55481186	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450446_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
ES_00052992	chr7	+	14403	91	FSM	ENSMUSG00000030451.17	ENSMUST00000205303.2	14403	91	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_69	18.2624082627554	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAACGCCATCAGGAA	NA	False	NA	NA	False	NA	NA	NA	55700624	55880880	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_55700697_55717731_55717847_55722040_55722179_55734736_55734957_55737087_55737189_55738004_55738162_55740662_55740774_55742286_55742459_55744012_55744187_55747124_55747314_55748082_55748235_55749826_55749985_55750075_55750190_55753475_55753728_55756086_55756281_55758433_55758635_55762792_55763022_55763145_55763271_55764449_55764629_55771292_55771478_55772060_55772217_55773944_55774131_55780916_55781088_55781546_55781651_55782169_55782321_55784343_55784559_55784778_55784912_55785017_55785146_55785233_55785430_55786334_55786469_55786968_55787143_55787216_55787354_55787467_55787620_55788526_55788719_55795511_55795700_55796284_55796478_55798386_55798570_55802190_55802373_55802791_55802940_55803013_55803211_55803524_55803756_55804762_55804902_55806134_55806279_55806607_55806751_55807038_55807307_55807395_55807533_55809121_55809221_55813489_55813659_55813756_55813883_55814662_55814772_55814885_55815026_55818573_55818765_55820133_55820240_55820322_55820415_55827572_55827749_55830816_55830929_55832152_55832235_55832327_55832472_55833689_55833781_55834053_55834232_55834373_55834456_55834540_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ES_00052995	chr7	+	236	2	Intergenic	novelGene_3727	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATATTTTTGTTATTA	NA	False	NA	NA	False	NA	NA	NA	55724816	55775653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_55724847_55775447
ES_00052996	chr7	+	560	1	FSM	ENSMUSG00000109157.2	ENSMUST00000208008.2	3193	1	-207	2840	-207	-2840	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTACAAAGAATACTGAA	NA	False	NA	NA	False	NA	NA	NA	58968171	58968731	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_58968200_58968700
ES_00052997	chr7	+	1279	1	FSM	ENSMUSG00000047370.6	ENSMUST00000057611.6	492	1	-49	-738	-49	738	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTCCATTTTT	NA	False	NA	NA	False	NA	NA	NA	59805307	59806586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_59805300_59806600
ES_00052998	chr7	+	396	3	FSM	ENSMUSG00000033510.15	ENSMUST00000176734.2	396	3	-20	20	6	-20	multi-exon	FALSE	canonical	1	2	junction_2	1	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTCATCATGACATCT	NA	False	NA	NA	False	NA	NA	NA	63094504	63267628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_63094676_63265036_63265167_63267533
ES_00052999	chr7	+	626	1	FSM	ENSMUSG00000081788.3	ENSMUST00000121016.3	2071	1	265	1180	265	-1180	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTCCATTACCCGGGA	NA	False	NA	NA	False	NA	NA	NA	63192491	63193117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_63192500_63193100
ES_00053001	chr7	+	559	3	FSM	ENSMUSG00000030523.19	ENSMUST00000205939.2	534	3	-232	207	135	-207	multi-exon	FALSE	canonical	1	1	junction_2	1.5	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGGCTCAGTGGTTAAAA	728	False	NA	NA	False	NA	NA	NA	63876463	63880821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_63876757_63879804_63880034_63880784
ES_00053003	chr7	+	216	3	Intergenic	novelGene_3736	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCACTCAAGTGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	65471723	65482537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_65471861_65475550_65475561_65482468
ES_00053004	chr7	+	4007	20	FSM	ENSMUSG00000030513.15	ENSMUST00000176209.2	3734	20	-200	-73	96	27	multi-exon	FALSE	canonical	3	5	junction_9	40.4291384456442	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTTATGGGTTCTTGAT	NA	False	NA	88	True	AATAAA	-40	NA	65511979	65700161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
ES_00053005	chr7	+	1500	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	-98	667	-38	-667	intron_retention	FALSE	canonical	3	70	junction_2	8	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATAGTTTTTTATTACA	NA	False	NA	NA	False	AGTAAA	-18	NA	66339598	66358983	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_66339772_66345923_66346055_66357787
ES_00053006	chr7	+	2603	7	NIC	ENSMUSG00000053091.17	novel	2647	8	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	16.3647656737136	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACATGCGTGTCTGGGTC	NA	False	NA	10	True	AATAAA	-16	NA	66339617	66364491	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_66339772_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
ES_00053007	chr7	+	548	4	FSM	ENSMUSG00000053091.17	ENSMUST00000150071.8	537	4	-11	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	37.7918274528002	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACATCTTCTATCTCAAC	NA	False	NA	NA	False	NA	NA	NA	66339636	66357969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_66339772_66345923_66346055_66356772_66356873_66357787
ES_00053008	chr7	+	4227	3	FSM	ENSMUSG00000053091.17	ENSMUST00000132181.2	4227	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGCAAGTGTCCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66359893	66367002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_66360495_66361620_66361793_66363548
ES_00053009	chr7	+	1047	4	FSM	ENSMUSG00000030555.17	ENSMUST00000133710.8	3627	4	-40	2620	-40	-13	multi-exon	FALSE	canonical	3	46	junction_1	15.2534149181967	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATAAGGAAGTATTGTA	NA	False	NA	NA	False	NA	NA	NA	67297117	67319692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445
ES_00053010	chr7	+	1350	1	FSM	ENSMUSG00000005533.11	ENSMUST00000207487.2	1350	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACTAAGCA	NA	False	NA	NA	False	NA	NA	NA	67836372	67837722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_67836400_67837700
ES_00053011	chr7	+	535	1	FSM	ENSMUSG00000005533.11	ENSMUST00000208731.2	2668	1	622	1511	622	-1511	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTCTCTGTCCTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	67860628	67861163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_67860600_67861200
ES_00053012	chr7	+	6628	1	ISM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	274214	0	15203	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCCAGTTGGTT	NA	False	NA	5	True	AATAAA	-16	NA	67876788	67883416	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_67876800_67883400
ES_00053014	chr7	+	2526	7	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	59.0536479257068	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTAATTTTAGGACTTT	NA	False	NA	47	True	AATAAA	-18	NA	67925742	68012829	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_67925790_67950580_67950712_67971567_67971654_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ES_00053015	chr7	+	518	5	NNC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-4	-28169	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	58.8451357377991	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	67925752	67975225	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67975061
ES_00053017	chr7	+	1461	1	FSM	ENSMUSG00000097530.2	ENSMUST00000181818.2	1461	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCATTCTGGGAATTGTT	NA	False	NA	NA	False	NA	NA	NA	72322565	72324026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_72322600_72324000
ES_00053018	chr7	+	12448	36	NNC	ENSMUSG00000066406.17	novel	12597	38	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_20	5.78710741604974	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCGTGATGTATTTG	NA	False	NA	3	True	AATAAA	-18	NA	75105304	75404357	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249_75229547_75235904_75236089_75252533_75252727_75258232_75261297_75264668_75264797_75313159_75313236_75316259_75316397_75326853_75327228_75334864_75335058_75336960_75337070_75345371_75345415_75347049_75347183_75354112_75354288_75367517_75367586_75369876_75369944_75373532_75373669_75375047_75375161_75375721_75375869_75376717_75376969_75378543_75378670_75378781_75378900_75380110_75380360_75385460_75385538_75386033_75386216_75386355_75386439_75389113_75389309_75392383_75392546_75393213_75393285_75393712_75393758_75396507_75396559_75397325_75397776_75398927_75399259_75400321
ES_00053019	chr7	+	1478	1	FSM	ENSMUSG00000052629.6	ENSMUST00000064591.5	2205	1	-270	997	-270	-997	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAGACAGCCTTAGACT	NA	False	NA	NA	False	NA	NA	NA	78228307	78229785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78228300_78229800
ES_00053020	chr7	+	1049	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	-224	0	13	0	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78432879	78442737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ES_00053021	chr7	+	1987	4	FSM	ENSMUSG00000097023.9	ENSMUST00000182317.2	479	4	-176	-1332	27	0	multi-exon	FALSE	canonical	2	3	junction_1	2.16024689946929	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTCTTGTTTGTATAT	NA	False	NA	NA	False	AATAAA	-16	NA	79165006	79182339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79165421_79173664_79173725_79177510_79177618_79180933
ES_00053024	chr7	+	4741	5	FSM	ENSMUSG00000048897.16	ENSMUST00000049680.10	4721	5	-20	0	-20	0	multi-exon	FALSE	canonical	3	72	junction_4	128.705817661829	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGACTGTACGTGCTTCTT	NA	False	NA	18	True	AATAAA	-18	NA	79675764	79742497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181_79736357_79740082
ES_00053025	chr7	+	2742	13	FSM	ENSMUSG00000030539.14	ENSMUST00000107383.8	2775	13	0	33	0	-33	multi-exon	FALSE	canonical	3	35	junction_1	18.0698874742853	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGCACATACGTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	79836625	79871547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79836740_79848266_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535
ES_00053026	chr7	+	2095	1	FSM	ENSMUSG00000108389.2	ENSMUST00000206885.2	2285	1	-161	351	-161	-351	mono-exon	FALSE	NA	NA	NA	NA	NA	344	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79858980	79861075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79859000_79861100
ES_00053027	chr7	+	271	1	Intergenic	novelGene_3745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTTAATGCTCAGATG	1784	False	NA	NA	False	ATTAAA	-27	NA	79892887	79893158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_79892900_79893200
ES_00053028	chr7	+	217	1	FSM	ENSMUSG00000045467.14	ENSMUST00000206240.2	380	1	22	141	22	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCAGTGTCTGCCGTGG	5091	False	NA	NA	False	NA	NA	NA	79896194	79896411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79896200_79896400
ES_00053029	chr7	+	1347	4	NNC	ENSMUSG00000047084.9	novel	1317	3	NA	NA	3	29926	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.088666983561	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGAAAGAAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	79910970	79945048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_79911172_79911568_79911680_79914125_79915127_79945014
ES_00053030	chr7	+	2507	24	NNC	ENSMUSG00000030534.14	novel	2574	23	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	29.2191381465379	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTGTTTTTT	NA	False	NA	11	True	AATAAA	-15	NA	79919427	79941321	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862_79941030_79941059
ES_00053031	chr7	+	2455	24	NNC	ENSMUSG00000030534.14	novel	2574	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	29.2191381465379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTGTTTTTT	NA	False	NA	11	True	AATAAA	-15	NA	79919481	79941321	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862_79941030_79941057
ES_00053032	chr7	+	204	2	FSM	ENSMUSG00000030534.14	ENSMUST00000135470.2	639	2	0	435	0	-435	multi-exon	FALSE	canonical	3	132	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACACGGCTAAGGAAGA	NA	False	NA	NA	False	GATAAA	-22	NA	79939803	79940191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79939832_79940015
ES_00053033	chr7	+	3035	14	FSM	ENSMUSG00000038943.17	ENSMUST00000047558.14	3016	14	-19	0	-18	0	multi-exon	FALSE	canonical	3	21	junction_11	336.527023981466	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944179	79966007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960920_79961964_79962076_79962779_79962957_79964861
ES_00053034	chr7	+	2976	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944212	79966007	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
ES_00053035	chr7	+	3045	15	NNC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	332.537100891596	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944214	79966002	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954342_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
ES_00053037	chr7	+	2283	3	FSM	ENSMUSG00000038797.14	ENSMUST00000147125.2	1582	3	-45	-656	-12	7	multi-exon	FALSE	canonical	2	3	junction_1	2.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTTTGTCGTCATTTCT	2876	False	NA	NA	False	NA	NA	NA	80510655	80526292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_80510826_80512915_80513420_80524683
ES_00053042	chr7	+	1091	5	NNC	ENSMUSG00000038563.15	novel	3610	20	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	60.1139542868376	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297814	82308234	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82307474
ES_00053043	chr7	+	268	1	FSM	ENSMUSG00000108825.2	ENSMUST00000207355.2	2447	1	39	2140	39	-2140	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTAGTGTGGCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	83282617	83282885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_83282600_83282900
ES_00053044	chr7	+	2595	3	FSM	ENSMUSG00000038503.16	ENSMUST00000153377.2	1109	3	-386	-1100	-56	1100	multi-exon	FALSE	canonical	1	3	junction_1	654.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATAGGTATATTCTGTC	NA	False	NA	24	True	AATAAA	-19	NA	83541151	83548388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_83542083_83544737_83544971_83546957
ES_00053046	chr7	+	2167	4	NNC	ENSMUSG00000038503.16	novel	1109	3	NA	NA	0	1100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	617.776838528463	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATAGGTATATTCTGTC	NA	False	NA	24	True	AATAAA	-19	NA	83541537	83548388	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_83542083_83544737_83544971_83546957_83547623_83547664
ES_00053047	chr7	+	3990	19	NIC	ENSMUSG00000039361.12	novel	3511	20	NA	NA	16	348	combination_of_known_junctions	FALSE	canonical	3	52	junction_13	32.2637663220516	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTTTTAAATTAAGAAT	NA	False	NA	13	True	ATTAAA	-24	NA	89779453	89858659	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ES_00053049	chr7	+	1389	2	FSM	ENSMUSG00000051451.7	ENSMUST00000143408.3	1380	2	-9	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGGCTCAAAGAATTT	NA	False	NA	NA	False	AATAAA	-22	NA	90092876	90095312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_90093586_90094632
ES_00053053	chr7	+	599	6	FSM	ENSMUSG00000018995.13	ENSMUST00000149204.3	606	6	7	0	7	0	multi-exon	FALSE	canonical	3	16	junction_1	40.0269908936458	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCCAAGGAGAGTTTCTT	7365	False	NA	NA	False	AATAAA	-2	NA	96600734	96652022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_96600863_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004
ES_00053055	chr7	+	213	1	FSM	ENSMUSG00000083974.2	ENSMUST00000120511.2	188	1	78	-103	78	103	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAATTCTCACCACACCT	NA	False	NA	NA	False	AATAAA	-34	NA	97055424	97055637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_97055400_97055600
ES_00053056	chr7	+	246	1	FSM	ENSMUSG00000065360.3	ENSMUST00000083426.3	109	1	-209	72	-209	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTGTGGACATGACCATA	8144	False	NA	NA	False	NA	NA	NA	97170805	97171051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_97170800_97171100
ES_00053061	chr7	+	272	1	FSM	ENSMUSG00000109492.2	ENSMUST00000208990.2	651	1	72	307	72	-307	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCATCGTGGCTTATCCA	NA	False	NA	NA	False	NA	NA	NA	98739510	98739782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_98739500_98739800
ES_00053063	chr7	+	377	4	FSM	ENSMUSG00000035211.10	ENSMUST00000208270.2	628	4	0	251	0	-251	multi-exon	FALSE	canonical	1	1	junction_1	0.471404520791032	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCCTTCCAACAGGACC	NA	False	NA	NA	False	NA	NA	NA	99551912	99561119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_99551954_99555657_99555784_99560174_99560269_99561003
ES_00053066	chr7	+	1225	1	FSM	ENSMUSG00000044881.8	ENSMUST00000208772.2	1329	1	-13	117	-13	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTGTATACTCTTAAT	7529	False	NA	NA	False	NA	NA	NA	100186264	100187489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100186300_100187500
ES_00053068	chr7	+	4926	33	FSM	ENSMUSG00000032812.19	ENSMUST00000084896.10	4926	33	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_28	32.7774068290568	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTATGGTGCTGAGGCCT	NA	False	NA	12	True	TATAAA	-17	NA	101022199	101061095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101022709_101034068_101034248_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101054139_101054173_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ES_00053069	chr7	+	4742	32	NIC	ENSMUSG00000032812.19	novel	4404	31	NA	NA	-16	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	27.1784866259281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTATGGTGCTGAGGCC	NA	False	NA	11	True	TATAAA	-16	NA	101027380	101061094	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_101027740_101034068_101034248_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ES_00053071	chr7	+	2226	17	NNC	ENSMUSG00000001829.18	novel	2287	17	NA	NA	7	89424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	192.786110430705	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAACCACCTATCCAAAAC	NA	False	NA	NA	False	NA	NA	NA	101312918	101534137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711_101437020_101534103
ES_00053072	chr7	+	783	6	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_2	189.568562794573	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7830	False	NA	19	True	AATAAA	-19	NA	101545627	101548745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ES_00053074	chr7	+	1000	5	NNC	ENSMUSG00000030649.19	novel	818	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	29	junction_1	232.940308877618	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	8370	False	NA	19	True	AATAAA	-19	NA	101546167	101548745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_101546254_101546939_101547025_101547148_101547279_101547760_101547821_101548106
ES_00053075	chr7	+	1523	5	FSM	ENSMUSG00000030649.19	ENSMUST00000098237.9	1328	5	-195	0	149	0	multi-exon	FALSE	canonical	1	3	junction_4	243.886628374743	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAACTTGGTCCAGACT	8946	False	NA	6	True	NA	NA	NA	101546743	101551052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101550138
ES_00053079	chr7	+	3282	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	7	junction_1	28.9048438847194	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714799	101732969	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_+_101715150_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ES_00053081	chr7	+	341	2	FSM	ENSMUSG00000030990.19	ENSMUST00000140631.2	372	2	31	0	4	0	multi-exon	FALSE	canonical	2	2	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCATCCTGTGGTCCCT	NA	False	NA	NA	False	NA	NA	NA	101859572	101875592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101859799_101875477
ES_00053088	chr7	+	3558	9	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	0	-245	intron_retention	TRUE	non_canonical	0	0	junction_8	276.31221018985	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTCTTCTTACTCTGTA	NA	False	NA	16	True	AATAAA	-17	NA	103868635	103884114	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882795_103882838
ES_00053089	chr7	+	2560	8	FSM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	30	0	-4	0	multi-exon	FALSE	canonical	1	1	junction_3	5.3642809587196	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGAATCTGTTCATT	NA	False	NA	7	True	ATTAAA	-15	NA	103893695	103911441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_103893814_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
ES_00053090	chr7	+	2627	7	FSM	ENSMUSG00000090215.10	ENSMUST00000106847.9	1827	7	-92	-708	-92	708	multi-exon	TRUE	canonical	2	4	junction_2	3.71558280160133	1522	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCATTTGTATCGCTAT	NA	False	NA	NA	False	ATTAAA	-26	NA	103978585	103986824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_103979175_103979709_103979806_103980429_103980661_103983791_103983815_103984494_103984596_103984854_103984882_103985264
ES_00053091	chr7	+	253	1	Intergenic	novelGene_3784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATCTCACCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	103986223	103986476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_103986200_103986500
ES_00053092	chr7	+	2491	6	FSM	ENSMUSG00000030897.6	ENSMUST00000033187.6	2484	6	-7	0	-7	0	multi-exon	FALSE	canonical	1	1	junction_2	2.13541565040626	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCACTGGGTTTATCT	NA	False	NA	NA	False	NA	NA	NA	105053767	105057949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_105053961_105054095_105054198_105054376_105054484_105054688_105055335_105056007_105056358_105056856
ES_00053093	chr7	+	579	3	NNC	ENSMUSG00000089847.9	novel	3273	3	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	175.5	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTATTTGTCTATGGGTA	NA	False	NA	7	True	AATAAA	-16	NA	105289664	105290555	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_105289830_105289968_105290065_105290237
ES_00053094	chr7	+	1755	13	FSM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	-6	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_1	93.7171794401764	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	False	NA	25	True	AATAAA	-15	NA	105385925	105392129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ES_00053095	chr7	+	565	2	FSM	ENSMUSG00000062542.12	ENSMUST00000137663.2	482	2	-83	0	-83	0	multi-exon	FALSE	canonical	2	10	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAGGAGCAGCTGACT	NA	False	NA	NA	False	NA	NA	NA	106969851	107035543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_106970355_107035481
ES_00053096	chr7	+	1696	3	FSM	ENSMUSG00000051041.9	ENSMUST00000120990.2	1685	3	-11	0	-11	0	multi-exon	FALSE	canonical	2	7	junction_1	2.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTAAGTATCTT	NA	False	NA	NA	False	AATACA	-24	NA	107166641	107190301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_107167102_107170243_107170533_107189354
ES_00053097	chr7	+	501	4	FSM	ENSMUSG00000036528.17	ENSMUST00000208504.2	1725	4	0	1224	0	-1224	multi-exon	FALSE	canonical	3	32	junction_3	5.31245915016974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTCTCTTCTTCCGCA	7322	False	NA	NA	False	GATAAA	-19	NA	107194490	107281061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968
ES_00053098	chr7	+	1097	5	ISM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	100	0	38	0	3prime_fragment	FALSE	canonical	3	347	junction_1	28.0624304008046	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302996	109311396	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ES_00053099	chr7	+	2992	16	NNC	ENSMUSG00000061079.15	novel	2631	16	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	71.2814141273867	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTGTTTCATTAA	NA	False	NA	21	True	AATACA	-19	NA	109660929	109694603	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_109660983_109668694_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ES_00053100	chr7	+	527	1	FSM	ENSMUSG00000109904.2	ENSMUST00000210940.2	1751	1	35	1189	35	-1189	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGCAATTTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	109719231	109719758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_109719200_109719800
ES_00053102	chr7	+	3270	6	NNC	ENSMUSG00000031015.9	novel	4027	12	NA	NA	48374	394	intron_retention	FALSE	canonical	3	135	junction_1	84.7065522849325	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGAAGCGGTCCCTTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	109869335	109883107	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_109869365_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
ES_00053103	chr7	+	1394	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	-4	0	-4	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCGGTTCATGCAT	5109	False	NA	NA	False	AATAAA	-16	NA	110226863	110229027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
ES_00053112	chr7	+	3124	1	FSM	ENSMUSG00000098132.2	ENSMUST00000182858.2	3496	1	217	155	217	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCATGTCCTCCTGAAC	NA	False	NA	NA	False	NA	NA	NA	112553385	112556509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_112553400_112556500
ES_00053113	chr7	+	2581	18	NNC	ENSMUSG00000055116.9	novel	2908	20	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	26.1100942974447	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3817	False	NA	NA	False	AATAAA	-20	NA	112806741	112913333	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_112806852_112833830_112833904_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898396_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ES_00053114	chr7	+	2888	1	FSM	ENSMUSG00000055116.9	ENSMUST00000209495.2	3995	1	959	148	959	-148	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTTGTTCATTAAAACGG	NA	False	NA	NA	False	AATGAA	-22	NA	112839919	112842807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_112839900_112842800
ES_00053116	chr7	+	203	1	FSM	ENSMUSG00000082183.2	ENSMUST00000118029.2	402	1	96	103	96	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCTACACACTTGTAACT	NA	False	NA	NA	False	AAAACA	-26	NA	112923560	112923763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_112923600_112923800
ES_00053119	chr7	+	4096	16	NNC	ENSMUSG00000030671.10	novel	719	4	NA	NA	-103	-1318	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	22.5737310459156	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTGAACTTGCGTTTAT	NA	False	NA	5	True	AATAAA	-15	NA	114014412	114137168	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_114014487_114090674_114090726_114093720_114093970_114097146_114097236_114105421_114105529_114107329_114107541_114108073_114108148_114117515_114117656_114118746_114118885_114120898_114121011_114122567_114122682_114126015_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
ES_00053121	chr7	+	230	1	FSM	ENSMUSG00000108401.2	ENSMUST00000205555.2	330	1	94	6	94	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCCTGTACATGAGAAGG	2498	False	NA	NA	False	NA	NA	NA	114771384	114771614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_114771400_114771600
ES_00053122	chr7	+	1211	3	FSM	ENSMUSG00000030663.13	ENSMUST00000106607.2	1153	3	-58	0	-18	0	multi-exon	FALSE	canonical	3	76	junction_1	845.5	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692517	115704442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_115692623_115702445_115702556_115703446
ES_00053124	chr7	+	1662	14	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	-12	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	24.6852374253431	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAGAACACACGTTT	NA	False	NA	NA	False	AATAAA	-37	NA	116103591	116139812	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116129683_116129827_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ES_00053125	chr7	+	1468	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103649	116139819	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ES_00053126	chr7	+	1527	2	FSM	ENSMUSG00000108736.2	ENSMUST00000205445.2	712	2	-811	-4	-811	4	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACAGTTTGTGTTTTCAT	NA	False	NA	NA	False	ATTAAA	-2	NA	116142079	116144994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_116143296_116144683
ES_00053127	chr7	+	7794	14	ISM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	-1	8	-1	0	intron_retention	TRUE	canonical	3	69	junction_11	11.494789146165	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118311773	118336239	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616
ES_00053128	chr7	+	2232	7	FSM	ENSMUSG00000033904.17	ENSMUST00000208766.2	997	7	0	-1235	0	0	multi-exon	FALSE	canonical	3	41	junction_6	22.9031778484025	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTTGTTGGATCTCTTT	NA	False	NA	7	True	AATAAA	-17	NA	118325777	118336244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
ES_00053131	chr7	+	1625	1	FSM	ENSMUSG00000109379.2	ENSMUST00000207311.2	2058	1	408	25	408	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATAAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	118384773	118386398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_118384800_118386400
ES_00053132	chr7	+	2091	8	ISM	ENSMUSG00000030924.17	ENSMUST00000133758.9	2019	14	-104	20719	5	209	intron_retention	FALSE	canonical	2	10	junction_1	9.54473890770861	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCTTTGTAGTATGTAT	NA	False	NA	NA	False	AATAAA	-17	NA	119393237	119427442	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_119393726_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525
ES_00053134	chr7	+	1082	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	-30	-300	-9	0	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGCTTTAGATTGATC	NA	False	NA	-11	True	NA	NA	NA	119495074	119515956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
ES_00053135	chr7	+	2233	3	NNC	ENSMUSG00000046096.8	novel	4831	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	9	junction_2	91	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCTATTACTTTTAATA	NA	False	NA	NA	False	AATAAA	-24	NA	120276842	120333494	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_120277094_120325342_120325556_120331725
ES_00053136	chr7	+	405	1	FSM	ENSMUSG00000046096.8	ENSMUST00000208534.2	3158	1	-316	3069	-316	1731	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGATCTGAAGTAACTT	948	False	NA	NA	False	NA	NA	NA	120327230	120327635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_120327200_120327600
ES_00053137	chr7	+	2933	18	FSM	ENSMUSG00000035064.18	ENSMUST00000106489.9	3047	18	114	0	114	0	multi-exon	FALSE	canonical	2	9	junction_1	20.5168510369059	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442936	120503224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_120443009_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ES_00053139	chr7	+	1384	5	NIC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	9	-5	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	141.324758977329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCTGGTTTAGGCTCAT	NA	False	NA	9	True	AATAAA	-10	NA	121732303	121748262	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121747279
ES_00053140	chr7	+	495	1	FSM	ENSMUSG00000084230.2	ENSMUST00000118119.2	477	1	-18	0	-18	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4616	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTCCTAAGCCCCACCAT	NA	False	NA	NA	False	NA	NA	NA	122041227	122041722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122041200_122041700
ES_00053141	chr7	+	5728	17	FSM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_15	18.1597726789186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTGCAAATGTATATTA	7920	False	NA	15	True	AATAAA	-21	NA	122570140	122601780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122597747_122599503_122599806
ES_00053147	chr7	+	412	2	NNC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	-8	-5229	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTTGGTTCCTTCC	6890	False	NA	NA	False	NA	NA	NA	122977270	122995471	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_122977479_122995267
ES_00053149	chr7	+	1159	5	FSM	ENSMUSG00000030762.12	ENSMUST00000206106.2	1159	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.3895116933639	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCAGGTGTCTGTTGACT	5836	False	NA	1	True	AATAAA	-15	NA	123062973	123067221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_123063065_123063411_123063539_123064331_123064547_123065808_123065944_123066630
ES_00053151	chr7	+	949	3	NNC	ENSMUSG00000042978.12	novel	4109	4	NA	NA	-18657	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGAGCTGCAGGGTGG	NA	False	NA	19	True	AATAAA	-16	NA	125829376	125894188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_125829467_125839105_125839207_125893430
ES_00053154	chr7	+	227	2	Antisense	novelGene_ENSMUSG00000030733.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	205	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAAAGGT	NA	False	NA	NA	False	ATTAAA	-21	NA	126040045	126076579	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_126040097_126076403
ES_00053155	chr7	+	1219	3	FSM	ENSMUSG00000042759.13	ENSMUST00000137646.8	457	3	-20	-742	-19	0	multi-exon	FALSE	canonical	0	0	junction_1	4.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGGTAAGGACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	126184143	126188284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126184241_126187068_126187335_126187428
ES_00053156	chr7	+	219	1	Intergenic	novelGene_3820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	453	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGAAACAAAACCCAGGG	NA	False	NA	NA	False	NA	NA	NA	126229525	126229744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_126229500_126229700
ES_00053159	chr7	+	756	5	FSM	ENSMUSG00000030703.9	ENSMUST00000205468.2	811	5	55	0	55	0	multi-exon	FALSE	canonical	1	3	junction_1	2.95803989154981	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAAGTTTTTCTTCTGTT	NA	False	NA	NA	False	GGGGCT	-22	NA	126366073	126367833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741
ES_00053160	chr7	+	702	4	FSM	ENSMUSG00000052301.15	ENSMUST00000137873.8	862	4	160	0	160	0	multi-exon	FALSE	canonical	1	2	junction_2	2.05480466765633	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTCAGGTGAGGGCA	1533	False	NA	NA	False	NA	NA	NA	126447586	126448932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126448035_126448391_126448472_126448653_126448729_126448833
ES_00053161	chr7	+	431	2	FSM	ENSMUSG00000042606.10	ENSMUST00000146120.2	431	2	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACCCTGTTATACAAGAG	3920	False	NA	NA	False	NA	NA	NA	126463587	126464090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126463834_126463905
ES_00053162	chr7	+	3061	18	FSM	ENSMUSG00000030683.12	ENSMUST00000106333.8	3595	18	324	210	87	116	multi-exon	FALSE	canonical	0	0	junction_6	1.47411342189902	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACACAAGAACTGTCCCC	NA	False	NA	NA	False	GGGGCT	-16	NA	126550224	126569558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126550289_126551171_126551304_126551945_126552246_126552556_126552697_126552886_126553089_126557440_126557627_126558218_126558388_126558962_126559127_126560908_126561110_126561524_126561664_126562436_126562634_126562734_126562930_126565896_126566089_126566185_126566378_126566878_126566918_126567098_126567217_126567331_126567429_126569224
ES_00053167	chr7	+	1329	5	Fusion	ENSMUSG00000106715.4_ENSMUSG00000053877.13	novel	1054	3	NA	NA	-45477	0	multi-exon	TRUE	non_canonical	0	0	junction_1	60.2593353763548	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTAATTGCTCTTT	NA	False	NA	17	True	AATAAA	-20	NA	127065677	127164442	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_+_127065700_127109023_127109045_127160329_127160958_127162293_127162465_127163955
ES_00053168	chr7	+	2087	12	NIC	ENSMUSG00000030822.16	novel	2175	13	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	2	49	junction_11	69.1986002820269	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTCTGACTCCTTTG	NA	False	NA	5	True	TATAAA	-10	NA	127070127	127075927	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075615
ES_00053169	chr7	+	2228	12	NIC	ENSMUSG00000030822.16	novel	2175	13	NA	NA	19	-5	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	65.961797107765	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATATGTTTCTGACTC	NA	False	NA	0	True	TATAAA	-5	NA	127070242	127075922	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127070292_127070876_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ES_00053171	chr7	+	2600	7	FSM	ENSMUSG00000042423.10	ENSMUST00000205651.2	2627	7	0	27	0	-27	multi-exon	FALSE	canonical	3	29	junction_1	3.30403793359983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGATTCAAATAATGCAGAAA	2188	False	NA	NA	False	AATACA	-3	NA	127086020	127090856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ES_00053172	chr7	+	242	1	Intergenic	novelGene_3825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTATCAAAGCTGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	127107775	127108017	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_127107800_127108000
ES_00053174	chr7	+	1786	4	ISM	ENSMUSG00000053877.13	ENSMUST00000189136.7	1960	6	110	2034	0	834	5prime_fragment	FALSE	canonical	3	58	junction_2	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGGGTGCCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	127111283	127119975	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752
ES_00053176	chr7	+	315	1	FSM	ENSMUSG00000065259.3	ENSMUST00000083325.3	130	1	10	-195	10	195	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGTACCACACTGGGC	NA	False	NA	NA	False	NA	NA	NA	127127055	127127370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127127100_127127400
ES_00053177	chr7	+	925	3	FSM	ENSMUSG00000107023.3	ENSMUST00000206825.2	925	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	59	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTCCGCCTCCAATATT	NA	False	NA	NA	False	NA	NA	NA	127159256	127162376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127159865_127160723_127160958_127162293
ES_00053178	chr7	+	223	1	Intergenic	novelGene_3826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTTTCTAAGTCAAGGG	NA	False	NA	NA	False	NA	NA	NA	127167777	127168000	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_127167800_127168000
ES_00053179	chr7	+	1426	3	FSM	ENSMUSG00000030815.12	ENSMUST00000129457.2	1426	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	70	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAATTCATGAAGC	NA	False	NA	NA	False	NA	NA	NA	127172511	127177793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127172629_127172916_127173139_127176706
ES_00053183	chr7	+	200	1	Intergenic	novelGene_3828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAATAAAAGAATTTGAG	6162	False	NA	NA	False	NA	NA	NA	127250706	127250906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_127250700_127250900
ES_00053184	chr7	+	511	5	FSM	ENSMUSG00000108801.2	ENSMUST00000205992.2	508	5	-3	0	-3	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAGTGAACAGTGTCTA	2890	False	NA	NA	False	NA	NA	NA	127291103	127299355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127291202_127292872_127292975_127296253_127296369_127298101_127298271_127299328
ES_00053187	chr7	+	3786	11	NNC	ENSMUSG00000030811.15	novel	3449	10	NA	NA	626	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	32.3907394173088	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGACTTTTTGTGTCT	2159	False	NA	15	True	TATAAA	-19	NA	127346572	127368655	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_127346757_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ES_00053188	chr7	+	2139	3	FSM	ENSMUSG00000043964.15	ENSMUST00000121504.2	2141	3	2	0	2	0	multi-exon	FALSE	canonical	0	0	junction_2	1	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTATTCCCAGACTA	NA	False	NA	NA	False	GATAAA	-15	NA	127368988	127374322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127369389_127369905_127370051_127372728
ES_00053190	chr7	+	2340	5	FSM	ENSMUSG00000042289.12	ENSMUST00000144748.8	2286	5	-54	0	-54	0	multi-exon	FALSE	canonical	3	82	junction_2	5.22015325445528	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1830	False	NA	14	True	AATAAA	-15	NA	127399721	127402974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407
ES_00053191	chr7	+	501	4	FSM	ENSMUSG00000030805.15	ENSMUST00000138294.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	9.28559218478941	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATCTTTACGTTTCTAGC	NA	False	NA	NA	False	NA	NA	NA	127441856	127445758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127441931_127442743_127442815_127445191_127445449_127445659
ES_00053194	chr7	+	4910	13	FSM	ENSMUSG00000030795.19	ENSMUST00000128851.8	4909	13	-1	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	294.416324653071	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTGTTTCCCCCAGTT	1183	False	NA	34	True	ATTAAA	-17	NA	127566661	127581201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ES_00053198	chr7	+	2467	18	FSM	ENSMUSG00000042055.14	ENSMUST00000143422.8	2780	18	0	313	0	-313	multi-exon	FALSE	canonical	2	7	junction_17	38.64298483317	408	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGCTCACTCCTGAGAG	NA	False	NA	NA	False	AATGAA	-39	NA	129193631	129227051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226879
ES_00053204	chr7	+	3934	17	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	73	0	intron_retention	FALSE	canonical	3	154	junction_1	59.7013400184619	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130247731	130366514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ES_00053206	chr7	+	3668	4	FSM	ENSMUSG00000030852.19	ENSMUST00000207230.2	3668	4	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	22.5141930543577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	-46	True	NA	NA	NA	130358071	130366439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_130361056_130361263_130361371_130361644_130361766_130365983
ES_00053207	chr7	+	3854	13	NIC	ENSMUSG00000040268.18	novel	3777	13	NA	NA	26	180	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	65.7594522145338	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTTGAATTCTTGG	NA	False	NA	10	True	AATAAA	-18	NA	130467511	130515222	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511389_130512561
ES_00053209	chr7	+	4452	10	ISM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	16596	10	0	0	intron_retention	FALSE	canonical	3	187	junction_9	23.2139804619735	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACTCACGTCCCCTTT	NA	False	NA	13	True	AATAAA	-15	NA	130484081	130515032	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317
ES_00053212	chr7	+	5417	1	FSM	ENSMUSG00000063179.14	ENSMUST00000208084.2	5294	1	-148	25	-148	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	130990769	130996186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_130990800_130996200
ES_00053213	chr7	+	2128	9	FSM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	579.695609781547	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTGTGTTACCTTGG	NA	False	NA	11	True	ATTAAA	-20	NA	131162108	131173624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ES_00053216	chr7	+	2096	8	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	0	181	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	212.306863011144	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGCCAAAATTGAGTCA	NA	False	NA	NA	False	NA	NA	NA	138448087	138484967	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_138448245_138448340_138448434_138470138_138470237_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ES_00053217	chr7	+	2101	10	NNC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	0	2947	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	210.31933392397	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCTGACGTTCCCACCC	NA	False	NA	NA	False	NA	NA	NA	138448087	138487733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937_138484782_138487708
ES_00053229	chr7	+	2671	13	NIC	ENSMUSG00000062031.14	novel	2981	14	NA	NA	-1	-22	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	19.5930826795808	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTCAGTGCTGGCAAAG	NA	False	NA	-15	True	NA	NA	NA	140521492	140527547	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_140521557_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
ES_00053230	chr7	+	560	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106040.8	560	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	567.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547940	140549738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140547965_140548152_140548352_140549401
ES_00053231	chr7	+	5088	20	NNC	ENSMUSG00000055629.6	novel	3556	20	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	46.413771955604	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140641016	140652313	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_140641338_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140649189_140649305_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ES_00053232	chr7	+	1579	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	-19	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	False	NA	17	True	AATAAA	-14	NA	140795787	140798568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
ES_00053233	chr7	+	5545	18	NNC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-296	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	63.1683640324243	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCATTGTGTTCTAAT	NA	False	NA	34	True	NA	NA	NA	140808400	140842613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_140808805_140811139_140811256_140812334_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841200_140841456_140841688_140841818_140842321
ES_00053236	chr7	+	1362	9	FSM	ENSMUSG00000025503.6	ENSMUST00000211654.2	1362	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1588.07752782256	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTTTCATTTCACCG	3840	False	NA	16	True	ATTAAA	-15	NA	140972111	140982879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_140972232_140975522_140975658_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ES_00053246	chr7	+	1274	8	FSM	ENSMUSG00000025511.16	ENSMUST00000117634.2	1281	8	7	0	7	0	multi-exon	FALSE	canonical	2	12	junction_1	83.3289522657899	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	4658	False	NA	39	True	NA	NA	NA	141056319	141073334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_141056392_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ES_00053252	chr7	+	895	4	FSM	ENSMUSG00000045752.14	ENSMUST00000105920.8	895	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	69.3012746395524	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_142623251_142623491_142623588_142623672_142624030_142624528
ES_00053253	chr7	+	2699	10	NIC	ENSMUSG00000058454.16	novel	2815	9	NA	NA	287	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	190.222676531129	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTGTACTGTCTCCTG	NA	False	NA	33	True	NA	NA	NA	143377190	143402148	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_143377278_143383875_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ES_00053255	chr7	-	3167	1	FSM	ENSMUSG00000104747.3	ENSMUST00000196199.3	62	1	-1756	-1349	-1756	1349	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGAAGTCTCTGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	3269689	3266522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3266500_3269700
ES_00053256	chr7	-	1493	6	NNC	ENSMUSG00000053338.10	novel	1535	6	NA	NA	-31010	66	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	18.7467330487208	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAGAAGGAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	3582150	3537019	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_3537738_3544441_3544508_3545190_3545488_3545940_3546232_3546711_3546748_3582065
ES_00053257	chr7	-	792	6	NIC	ENSMUSG00000006335.17	novel	1091	6	NA	NA	-8	5	combination_of_known_junctions	FALSE	canonical	3	25	junction_4	106.031316128774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACACTTGTCTAGGTC	NA	False	NA	-7	True	AATAAA	-10	NA	3632586	3623328	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631822_3632086_3632550
ES_00053258	chr7	-	336	1	FSM	ENSMUSG00000085039.3	ENSMUST00000206440.2	2298	1	-156	2118	-124	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTGGTTAAGTTAGCA	NA	False	NA	NA	False	NA	NA	NA	3647759	3647423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3647400_3647800
ES_00053260	chr7	-	2205	14	FSM	ENSMUSG00000019734.17	ENSMUST00000121743.2	2204	14	0	-1	0	0	multi-exon	FALSE	canonical	3	9	junction_12	10.0954029024756	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCGTTTTGAAACCCCG	6158	False	NA	-12	True	AATAAA	-16	NA	3679792	3668788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562
ES_00053261	chr7	-	220	1	FSM	ENSMUSG00000035596.15	ENSMUST00000205644.2	3399	1	3209	-30	2296	30	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAAGATTCTGGCAGCT	996	False	NA	NA	False	NA	NA	NA	3692570	3692350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3692400_3692600
ES_00053264	chr7	-	537	3	ISM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	146	-123	146	0	intron_retention	FALSE	canonical	3	51	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	7476	False	NA	-11	True	AATAAA	-19	NA	4510878	4507661	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_4507800_4510381_4510423_4510520
ES_00053265	chr7	-	888	13	FSM	ENSMUSG00000064179.14	ENSMUST00000163710.8	885	13	-3	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_8	20.3570558338435	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9194	False	NA	-11	True	AATAAA	-19	NA	4518961	4507661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516809_4516837_4517211_4517226_4517335_4517379_4518929
ES_00053266	chr7	-	2629	9	Fusion	ENSMUSG00000055809.8_ENSMUSG00000035458.16	novel	912	8	NA	NA	-90	4	intron_retention	FALSE	canonical	3	16	junction_6	4.62162038683404	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTCTGCTAACCTGG	5126	False	NA	2	True	AATAAA	-21	NA	4527318	4521299	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303_4526859_4526936
ES_00053267	chr7	-	2224	12	FSM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	6.85022772137618	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTCTCCAGTGCCAAGA	NA	False	NA	1	True	AATAAA	-35	NA	4535452	4525931	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
ES_00053268	chr7	-	3446	24	Fusion	ENSMUSG00000052296.8_ENSMUSG00000045282.8	novel	2731	7	NA	NA	13	643	multi-exon	FALSE	canonical	2	11	junction_1	66.4640841368572	339	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAAACAAAAAACCAAAG	NA	False	NA	NA	False	NA	NA	NA	4661967	4633850	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_4634236_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
ES_00053269	chr7	-	3900	26	NNC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	100.016846580964	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTGGGACTGTGA	NA	False	NA	-3	True	AATAAA	-17	NA	4661980	4634493	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_4634896_4634931_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4654818_4654931_4661479
ES_00053272	chr7	-	3950	1	FSM	ENSMUSG00000060860.9	ENSMUST00000206139.2	4093	1	-289	432	-289	-432	mono-exon	FALSE	NA	NA	NA	NA	NA	412	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTTGGTTGCTGAGAT	NA	False	NA	NA	False	NA	NA	NA	4814407	4810457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4810500_4814400
ES_00053274	chr7	-	1198	2	FSM	ENSMUSG00000110221.2	ENSMUST00000210663.2	1279	2	81	0	81	0	multi-exon	TRUE	canonical	2	4	junction_1	0	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGAGAGCTTCAGACAGC	2977	False	NA	NA	False	NA	NA	NA	4909434	4901448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4902496_4909283
ES_00053275	chr7	-	2887	4	NNC	ENSMUSG00000061374.15	novel	2306	3	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	non_canonical	3	199	junction_3	112.3397624273	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGTTTTTTGATCCT	3866	False	NA	-1	True	AATAAA	-17	NA	5016643	5010054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_5010950_5010993_5012205_5015676_5016022_5016207
ES_00053277	chr7	-	2624	1	FSM	ENSMUSG00000109274.2	ENSMUST00000207548.2	2773	1	-88	237	-88	-237	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCGGCAGTAGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	5065136	5062512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_5062500_5065100
ES_00053278	chr7	-	306	3	NNC	ENSMUSG00000046792.9	novel	880	2	NA	NA	0	1035	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	80.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTTGGATTTCTCTCCA	9671	False	NA	NA	False	NA	NA	NA	6158925	6144249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_6144385_6146060_6146150_6158843
ES_00053279	chr7	-	1801	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	-329	-592	-258	525	multi-exon	FALSE	canonical	3	164	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGAGATTAAATGTCT	9342	False	NA	NA	False	NA	NA	NA	6159254	6144759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_6146150_6158843
ES_00053280	chr7	-	221	2	Intergenic	novelGene_3587	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAGAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	6974898	6958333	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_6958359_6974702
ES_00053281	chr7	-	781	1	FSM	ENSMUSG00000109488.2	ENSMUST00000207902.2	1186	1	147	258	147	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCCTGCCATGATCGAG	NA	False	NA	NA	False	NA	NA	NA	7100880	7100099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7100100_7100900
ES_00053282	chr7	-	479	2	FSM	ENSMUSG00000062116.11	ENSMUST00000210142.2	614	2	-104	239	-61	-239	multi-exon	FALSE	canonical	3	54	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATGCTTGGCCCAGAG	6175	False	NA	NA	False	NA	NA	NA	7124548	7122257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7122410_7124221
ES_00053283	chr7	-	4071	11	ISM	ENSMUSG00000000605.10	ENSMUST00000210594.2	2539	12	516	-1795	0	2	3prime_fragment	FALSE	canonical	3	23	junction_10	8.12465383877984	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCTTTGGTGTCTTTTTT	NA	False	NA	1	True	ATTAAA	-23	NA	7301745	7285305	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
ES_00053284	chr7	-	4562	13	FSM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	40	5	40	-5	multi-exon	FALSE	canonical	1	1	junction_12	13.5592834127275	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTGTCTTTGGTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	7302492	7285312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690_7301836_7302239
ES_00053285	chr7	-	2445	13	FSM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	11.9335544672249	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAGAAAGCCTTA	NA	False	NA	NA	False	AATGAA	-44	NA	7301805	7287053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
ES_00053287	chr7	-	304	1	FSM	ENSMUSG00000109885.2	ENSMUST00000211361.2	390	1	-76	162	-76	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTCATCAGCGAGTTCAC	NA	False	NA	NA	False	NA	NA	NA	7538039	7537735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7537700_7538000
ES_00053288	chr7	-	825	5	FSM	ENSMUSG00000092490.8	ENSMUST00000174729.2	825	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTACATGGGCTAAATG	NA	False	NA	NA	False	NA	NA	NA	8865651	8859275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_8859771_8860940_8861028_8861801_8861928_8863073_8863113_8865573
ES_00053289	chr7	-	2546	5	FSM	ENSMUSG00000092178.3	ENSMUST00000210683.2	2545	5	0	-1	0	1	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTGTCTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	9610893	9602805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_9604820_9605989_9606077_9606845_9606972_9608117_9608157_9610613
ES_00053290	chr7	-	556	2	ISM	ENSMUSG00000095339.3	ENSMUST00000168158.3	1754	4	0	3099	0	-3099	5prime_fragment	FALSE	canonical	3	15	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTCCTCTGGGGCTTAGT	NA	False	NA	NA	False	NA	NA	NA	10638977	10637765	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_10638240_10638895
ES_00053291	chr7	-	420	1	FSM	ENSMUSG00000109724.2	ENSMUST00000210952.2	3442	1	1217	1805	-639	-700	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTCAGTCTCAGTCG	NA	False	NA	NA	False	NA	NA	NA	12531874	12531454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12531500_12531900
ES_00053293	chr7	-	214	1	Intergenic	novelGene_3601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGCAGACAAAATTTAATTA	NA	False	NA	NA	False	NA	NA	NA	12690069	12689855	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_12689900_12690100
ES_00053294	chr7	-	2225	4	NNC	ENSMUSG00000049600.9	novel	2171	3	NA	NA	0	41993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.4261765172737	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTCTCAGGCTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	12743727	12695831	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_12695873_12739594_12740308_12740950_12742257_12743562
ES_00053295	chr7	-	2245	3	NIC	ENSMUSG00000049600.9	novel	2171	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_2	55	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGATTTTAGGATTCCAA	NA	False	NA	-45	True	NA	NA	NA	12743961	12739637	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_12740308_12740950_12742257_12743692
ES_00053301	chr7	-	719	7	NNC	ENSMUSG00000041571.11	novel	736	6	NA	NA	37	56321	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	759.385881266347	3001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGCAGCACAATTTATCC	NA	False	NA	NA	False	NA	NA	NA	15656290	15594811	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_15594837_15651137_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
ES_00053303	chr7	-	5976	15	FSM	ENSMUSG00000070808.5	ENSMUST00000210781.2	5975	15	0	-1	0	1	multi-exon	TRUE	canonical	1	1	junction_8	6.20730313782869	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGGCCCCCTCTGGCCCC	NA	False	NA	NA	False	ATTAAA	-28	NA	15781846	15704595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_15706815_15709007_15709111_15709290_15709386_15709589_15709739_15710975_15711038_15712613_15712724_15712939_15713121_15713275_15713912_15720837_15721015_15721403_15723366_15727004_15727071_15730325_15730369_15730475_15730522_15733318_15733420_15781820
ES_00053304	chr7	-	3869	17	NNC	ENSMUSG00000006019.16	novel	3801	17	NA	NA	1303	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	22.4609904890679	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTGTTTTATTTATTTA	9784	False	NA	0	True	NA	NA	NA	15954615	15931067	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912_15952876_15954590
ES_00053305	chr7	-	2227	12	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	0	287	intron_retention	FALSE	canonical	3	130	junction_1	29.1238449918179	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCATGAGCTGAGTCAGG	NA	False	NA	NA	False	NA	NA	NA	16020698	16009101	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ES_00053306	chr7	-	2786	5	FSM	ENSMUSG00000041375.20	ENSMUST00000124084.8	2773	5	0	-13	0	0	multi-exon	FALSE	canonical	3	130	junction_1	45.3176290200624	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGTGTCCTTGAACC	3622	False	NA	-1	True	AATAAA	-27	NA	16014622	16009388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16012464_16014522
ES_00053308	chr7	-	1908	10	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	19760	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	974.506598803267	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGTAAGACAGATGCGA	NA	False	NA	NA	False	NA	NA	NA	16121710	16034398	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_16034432_16060974_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ES_00053309	chr7	-	345	1	FSM	ENSMUSG00000048920.9	ENSMUST00000205677.2	2573	1	1793	435	1621	-435	mono-exon	FALSE	NA	NA	NA	NA	NA	1303	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTCATGTTATGCAA	NA	False	NA	NA	False	CATAAA	-2	NA	16547825	16547480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16547500_16547800
ES_00053310	chr7	-	613	2	FSM	ENSMUSG00000003099.12	ENSMUST00000154880.2	604	2	0	-9	0	0	multi-exon	FALSE	canonical	3	1176	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATCCTCACCCTCTTCGG	NA	False	NA	NA	False	NA	NA	NA	16743106	16741711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16741757_16742538
ES_00053311	chr7	-	363	2	FSM	ENSMUSG00000004328.16	ENSMUST00000139224.3	371	2	0	8	0	-8	multi-exon	FALSE	canonical	2	10	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCAAAGAATTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	16784588	16782783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16783032_16784473
ES_00053313	chr7	-	863	4	FSM	ENSMUSG00000040714.15	ENSMUST00000154419.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.35702260395516	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACCTTCCAGCACCTCC	NA	False	NA	NA	False	ATTAAA	-37	NA	19129907	19128425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19128647_19128809_19128874_19128985_19129381_19129724
ES_00053315	chr7	-	900	3	NNC	ENSMUSG00000044709.7	novel	763	2	NA	NA	0	182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.5	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2944	False	NA	NA	False	AAGAAA	-17	NA	19307268	19298688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19298802_19298849_19299602_19307233
ES_00053316	chr7	-	927	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-6	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2458	False	NA	NA	False	AAGAAA	-17	NA	19307754	19298688	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19298802_19298849_19299602_19307692
ES_00053317	chr7	-	895	3	FSM	ENSMUSG00000061028.8	ENSMUST00000208427.2	901	3	0	6	0	-1	multi-exon	FALSE	canonical	3	267	junction_1	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCACCACATGCTGTCCC	3134	False	NA	-10	True	AATAAA	-20	NA	19316911	19314968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19315084_19315305_19315331_19316156
ES_00053318	chr7	-	2398	20	NIC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	0	0	intron_retention	FALSE	canonical	3	190	junction_19	27.1360581324836	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338384	19314967	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ES_00053320	chr7	-	1525	11	FSM	ENSMUSG00000002983.18	ENSMUST00000208087.2	1525	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	103.696865912138	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGAGGTAACAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	19363173	19340477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19353438_19353768_19356850_19356860_19361847_19361896_19363115
ES_00053321	chr7	-	4839	13	FSM	ENSMUSG00000002981.11	ENSMUST00000208554.2	4819	13	0	-20	0	5	multi-exon	FALSE	canonical	3	1363	junction_5	138.739464064443	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAACTTTGAGAACAGT	5151	False	NA	NA	False	AAAACA	-22	NA	19398955	19365490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
ES_00053325	chr7	-	1221	3	FSM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	0	0	0	0	multi-exon	FALSE	canonical	3	10421	junction_2	50	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432332	19430196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19431029_19431403_19431573_19432112
ES_00053326	chr7	-	466	3	FSM	ENSMUSG00000053175.18	ENSMUST00000123375.8	694	3	228	0	228	0	multi-exon	FALSE	canonical	3	678	junction_2	39	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCGTGGCGCGGACATC	NA	False	NA	NA	False	NA	NA	NA	19546530	19545273	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19545334_19545419_19545625_19546329
ES_00053328	chr7	-	1794	2	FSM	ENSMUSG00000040511.15	ENSMUST00000159261.2	1794	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	9978	False	NA	NA	False	NA	NA	NA	19655038	19651201	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19652835_19654877
ES_00053330	chr7	-	574	2	FSM	ENSMUSG00000074282.11	ENSMUST00000146817.2	574	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGTGAAGAACCTTACAG	NA	False	NA	NA	False	NA	NA	NA	24008821	24003050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24003299_24008495
ES_00053334	chr7	-	584	3	FSM	ENSMUSG00000003380.12	ENSMUST00000206222.2	583	3	0	-1	0	0	multi-exon	FALSE	canonical	3	706	junction_2	32	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	5265	False	NA	-5	True	AATAAA	-24	NA	24671409	24669176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24669435_24669511_24669614_24671185
ES_00053336	chr7	-	2945	18	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	7141	-2	7093	-1	3prime_fragment	FALSE	canonical	3	12	junction_14	14.0665742848331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTGTGTGTGTTATGCT	NA	False	NA	-2	True	AATATA	-17	NA	24698227	24677592	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098
ES_00053337	chr7	-	1194	2	FSM	ENSMUSG00000054499.10	ENSMUST00000206498.2	1711	2	0	517	0	-517	multi-exon	FALSE	canonical	3	99	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTGTCCTGTGACTA	NA	False	NA	NA	False	NA	NA	NA	24919296	24916969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24917093_24918225
ES_00053338	chr7	-	1983	11	NNC	ENSMUSG00000057177.13	novel	2260	11	NA	NA	84	-1	intron_retention	FALSE	canonical	3	64	junction_10	96.9278597721006	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGTCTGGCTGCCTGT	NA	False	NA	-1	True	AATAAA	-20	NA	24937192	24927683	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936994
ES_00053340	chr7	-	1106	2	FSM	ENSMUSG00000005447.13	ENSMUST00000148828.2	1106	2	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACGTAACTTCTGTGAAT	8564	False	NA	NA	False	CATAAA	-2	NA	24997346	24996044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24996601_24996796
ES_00053341	chr7	-	550	1	FSM	ENSMUSG00000003123.16	ENSMUST00000105177.3	1251	1	691	10	691	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	390	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATCCCCAGCCCAGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	25097443	25096893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25096900_25097400
ES_00053342	chr7	-	2873	9	FSM	ENSMUSG00000074272.11	ENSMUST00000098669.8	2873	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	10.3440804327886	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAATAACAAGCTTTC	2878	False	NA	NA	False	TTTAAA	-33	NA	25176998	25161937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
ES_00053343	chr7	-	1158	4	FSM	ENSMUSG00000002608.9	ENSMUST00000154143.8	1158	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	5.43650214343336	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACGCAGTGTTGACGAA	NA	False	NA	NA	False	NA	NA	NA	25418428	25413558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25413908_25414175_25414446_25415159_25415613_25418342
ES_00053344	chr7	-	379	3	FSM	ENSMUSG00000002608.9	ENSMUST00000140847.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCTACAAGATGTCACTT	NA	False	NA	NA	False	NA	NA	NA	25418492	25416330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25416425_25417569_25417705_25418342
ES_00053345	chr7	-	1593	1	FSM	ENSMUSG00000040725.14	ENSMUST00000206260.2	2296	1	766	-63	766	63	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTCTAAAAGATCCACCT	NA	False	NA	NA	False	NA	NA	NA	25440236	25438643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25438600_25440200
ES_00053346	chr7	-	358	2	Genic_Genomic	ENSMUSG00000090467.4	novel	276	1	NA	NA	0	17573	multi-exon	FALSE	canonical	0	0	junction_1	0	83	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCATCCTTGACATAGGG	8776	False	NA	NA	False	NA	NA	NA	25528302	25510453	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_25510483_25527973
ES_00053348	chr7	-	2629	14	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24730	-237	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	23.3121346363171	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATGATAGTTCTTAGA	NA	False	NA	16	True	NA	NA	NA	26410592	26364888	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26390877_26390954_26392289_26392411_26392894_26393053_26410317
ES_00053349	chr7	-	2121	7	NNC	ENSMUSG00000058709.12	novel	1756	6	NA	NA	0	8047	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	268.54091349778	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATCCATAACCCCCACC	NA	False	NA	NA	False	NA	NA	NA	26865838	26850035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26850071_26858082_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
ES_00053350	chr7	-	2099	7	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	43	8047	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	216.296863900828	415	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATCCATAACCCCCACC	NA	False	NA	NA	False	NA	NA	NA	26866184	26850035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26850071_26858082_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ES_00053351	chr7	-	718	2	FSM	ENSMUSG00000061479.16	ENSMUST00000148491.2	509	2	0	-209	0	209	multi-exon	FALSE	canonical	3	2279	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTTTGCACTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	26888439	26886220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26886790_26888290
ES_00053353	chr7	-	1768	1	FSM	ENSMUSG00000061479.16	ENSMUST00000206439.2	1690	1	-92	14	0	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTTCTGCAGGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26895670	26893902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_26893900_26895700
ES_00053354	chr7	-	4726	29	FSM	ENSMUSG00000040488.19	ENSMUST00000118583.8	4726	29	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_23	117.369222706702	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAACCTCATTACAG	NA	False	NA	NA	False	AATAAA	-35	NA	27033038	27005422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
ES_00053355	chr7	-	867	5	FSM	ENSMUSG00000040488.19	ENSMUST00000148594.8	867	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	17.7200451466693	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACACAACCTGTGAGACAC	NA	False	NA	NA	False	ATTAAA	-22	NA	27010103	27006984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945
ES_00053359	chr7	-	4723	19	FSM	ENSMUSG00000011751.17	ENSMUST00000108363.8	4724	19	1	0	1	0	multi-exon	FALSE	canonical	2	8	junction_18	8.28150549920323	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27095977	27055807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495_27064116_27064988_27065186_27065832_27065918_27066024_27066164_27067024_27067270_27068613_27068995_27069826_27070032_27071298_27071430_27071521_27071801_27073570_27073661_27074797_27075023_27090857_27091122_27093582_27093730_27095913
ES_00053360	chr7	-	8267	33	ISM	ENSMUSG00000011751.17	ENSMUST00000011895.14	8747	36	13382	0	13300	0	3prime_fragment	TRUE	canonical	1	1	junction_19	9.48662710081934	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	1018	False	NA	0	True	AATAAA	-20	NA	27132642	27055807	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495_27064116_27064988_27065186_27065832_27065918_27066024_27066164_27067024_27067270_27068613_27068995_27069826_27070032_27071298_27071430_27071521_27071801_27073570_27073661_27074797_27075023_27090857_27091122_27093582_27093730_27097375_27097467_27102160_27102364_27103592_27104344_27106535_27106674_27107667_27108602_27114082_27114234_27116129_27116433_27117382_27117542_27117795_27117914_27117989_27118178_27118412_27118526_27123133_27123250_27126250_27126332_27127608_27127701_27132472
ES_00053361	chr7	-	596	1	ISM	ENSMUSG00000087371.2	ENSMUST00000147449.2	2713	4	4203	606	4203	-606	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACATGCTGTAATCACAC	NA	False	NA	NA	False	NA	NA	NA	27203344	27202748	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_27202700_27203300
ES_00053362	chr7	-	2273	14	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	126.954541554455	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGGTATGAGATGGTA	NA	False	NA	-3	True	AGTAAA	-27	NA	27252609	27231428	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244711_27252422
ES_00053365	chr7	-	7405	6	Fusion	ENSMUSG00000096916.8_ENSMUSG00000070709.13	novel	603	4	NA	NA	-68	1978	multi-exon	FALSE	canonical	3	15	junction_1	26.6713329250714	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTTGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	27713608	27604838	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_27611687_27620121_27620221_27625708_27625836_27626825_27626879_27711760_27711876_27713445
ES_00053368	chr7	-	546	6	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	0	-2059	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	18.9166593245213	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGACTCTAGTACTAGTA	NA	False	NA	NA	False	AATAAA	-45	NA	27678596	27664191	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
ES_00053369	chr7	-	6539	6	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	0	381	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	28.6454184818445	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATAGCAGAGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	27713540	27683897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713445
ES_00053372	chr7	-	3500	29	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_6	202.431176891187	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038144	28014315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016311_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ES_00053374	chr7	-	5056	19	FSM	ENSMUSG00000037552.18	ENSMUST00000094644.11	4623	19	-432	-1	-66	1	multi-exon	FALSE	canonical	2	5	junction_17	6.01156293229048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGCCTTTCTTGAG	NA	False	NA	0	True	NA	NA	NA	28072090	28059027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070539_28070671_28071284
ES_00053377	chr7	-	4415	14	NNC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	0	25952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.945814957734	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCAGAAACCTGTAGAA	6636	False	NA	NA	False	NA	NA	NA	28135616	28072994	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28073022_28098949_28101043_28101248_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ES_00053378	chr7	-	768	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	48	-570	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCCGTGCCACAGTAAT	NA	False	NA	1	True	AATGAA	-39	NA	28092085	28086140	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
ES_00053379	chr7	-	4710	12	NIC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	-77	0	intron_retention	FALSE	canonical	3	429	junction_11	37.2212504841429	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAAGACTCTTCATTTT	6523	False	NA	-8	True	NA	NA	NA	28135729	28098946	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ES_00053380	chr7	-	223	2	Intergenic	novelGene_3661	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAACATCAAAAAACAGGTG	NA	False	NA	NA	False	NA	NA	NA	28189314	28138404	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_28138435_28189121
ES_00053382	chr7	-	220	1	Intergenic	novelGene_3662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAACCCACACA	NA	False	NA	NA	False	NA	NA	NA	28189313	28189093	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_28189100_28189300
ES_00053384	chr7	-	3064	12	NNC	ENSMUSG00000030602.14	novel	2899	10	NA	NA	0	45824	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	271.957307052971	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCATGAGAAATGGCGAC	4596	False	NA	NA	False	NA	NA	NA	28297610	28212419	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28212445_28258245_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28269596_28269739_28297459
ES_00053385	chr7	-	1769	13	FSM	ENSMUSG00000037469.12	ENSMUST00000040112.5	1923	13	157	-3	157	0	multi-exon	FALSE	canonical	1	1	junction_12	2.11476292340825	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACACTTCCACTTGGTCC	8470	False	NA	NA	False	AATAAA	-27	NA	28330283	28307058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28307431_28310410_28310549_28313643_28313716_28313817_28313886_28313960_28314019_28314104_28314213_28314285_28314401_28314497_28314561_28314788_28314913_28315905_28316089_28316477_28316679_28328883_28329136_28330268
ES_00053386	chr7	-	211	1	Intergenic	novelGene_3665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTAAAAAAGAGCACTGA	NA	False	NA	NA	False	NA	NA	NA	28493269	28493058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_28493100_28493300
ES_00053387	chr7	-	1489	7	FSM	ENSMUSG00000054808.16	ENSMUST00000216863.2	1489	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	672.262266943159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGACCAAAACCAACAAAA	540	False	NA	NA	False	NA	NA	NA	28597618	28593135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28593813_28593925_28594085_28594545_28594612_28595513_28595661_28596300_28596481_28597273_28597409_28597493
ES_00053388	chr7	-	1594	13	FSM	ENSMUSG00000054808.16	ENSMUST00000127210.8	1594	13	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_6	372.864614616798	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGAGGGGTGGCTCACC	NA	False	NA	NA	False	NA	NA	NA	28661648	28598044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
ES_00053389	chr7	-	647	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681212	28670797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
ES_00053393	chr7	-	1361	7	FSM	ENSMUSG00000030590.16	ENSMUST00000123545.8	1359	7	0	-2	0	0	multi-exon	FALSE	canonical	3	257	junction_3	25.8698666405531	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855628	28851934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309
ES_00053395	chr7	-	437	3	FSM	ENSMUSG00000037239.9	ENSMUST00000207778.2	758	3	321	0	321	0	multi-exon	FALSE	canonical	2	3	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCATTGCCACAGTGGA	NA	False	NA	NA	False	NA	NA	NA	28866254	28862361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28862419_28865782_28865860_28865951
ES_00053396	chr7	-	4087	3	FSM	ENSMUSG00000046410.11	ENSMUST00000085818.6	4084	3	0	-3	0	3	multi-exon	FALSE	canonical	1	1	junction_2	2	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTTGTGTTTTCGTACT	NA	False	NA	NA	False	NA	NA	NA	28931940	28921347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28924685_28924896_28925293_28931586
ES_00053400	chr7	-	3151	5	FSM	ENSMUSG00000062040.15	ENSMUST00000053521.15	3150	5	0	-1	0	0	multi-exon	FALSE	canonical	2	2	junction_4	19.4084388862165	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTTCTCTTCTGTCACT	NA	False	NA	1	True	AATATA	-17	NA	29605529	29593139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605478
ES_00053401	chr7	-	4211	5	NIC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	-28	528	intron_retention	FALSE	canonical	3	10	junction_4	18.3626659284539	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTTTTTTTTTTTTTGT	5350	False	NA	NA	False	NA	NA	NA	29643208	29631687	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29643056
ES_00053402	chr7	-	3631	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	-9	-1441	-9	-107	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGAGCCAGAGGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	29772334	29754020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
ES_00053403	chr7	-	5132	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	-118	-2640	-118	2640	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGCTGTGTTTCTCTT	9922	False	NA	NA	False	NA	NA	NA	29789953	29752818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
ES_00053405	chr7	-	2931	2	NNC	ENSMUSG00000037029.9	novel	585	3	NA	NA	18	782	intron_retention	FALSE	canonical	2	6	junction_1	0	143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAAATCCTTCTTTATT	NA	False	NA	1	True	ATTAAA	-19	NA	29869134	29859911	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_29862799_29869090
ES_00053406	chr7	-	1441	1	FSM	ENSMUSG00000037029.9	ENSMUST00000208923.2	1263	1	8	-186	8	186	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGAAAAGCAGCTAGAAT	NA	False	NA	NA	False	NA	NA	NA	29869167	29867726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29867700_29869200
ES_00053407	chr7	-	1430	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	0	-1	0	0	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	NA	False	NA	-8	True	NA	NA	NA	29894473	29886366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
ES_00053408	chr7	-	600	3	FSM	ENSMUSG00000001794.14	ENSMUST00000148973.8	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	1502	junction_2	53.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGATCACACCTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	29889651	29886592	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29886959_29887095_29887155_29889476
ES_00053409	chr7	-	405	3	FSM	ENSMUSG00000006095.13	ENSMUST00000169358.8	396	3	0	-9	0	7	multi-exon	FALSE	canonical	3	99	junction_2	386	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCTTGATTCCAGAAAGA	NA	False	NA	2	True	NA	NA	NA	29926425	29923548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29923773_29923897_29923971_29926317
ES_00053410	chr7	-	2044	2	FSM	ENSMUSG00000037020.17	ENSMUST00000152543.2	648	2	-1391	-5	4	0	multi-exon	FALSE	canonical	3	202	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	2053	False	NA	-4	True	AATAAA	-21	NA	29941699	29939562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29939910_29940002
ES_00053411	chr7	-	4759	33	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	1	9	junction_7	44.8182091900156	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979804	29939562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942458_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ES_00053414	chr7	-	1334	3	FSM	ENSMUSG00000087009.2	ENSMUST00000152625.2	1339	3	0	5	0	-5	multi-exon	FALSE	canonical	0	0	junction_2	6	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATGTCTGAATTTTCTA	4717	False	NA	NA	False	NA	NA	NA	30165016	30161593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30162370_30162652_30163068_30164873
ES_00053415	chr7	-	2429	11	NIC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-4	5	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	7.82304288624318	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTACTGTTCATCT	NA	False	NA	-1	True	AATAAA	-21	NA	30251728	30238553	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30251632
ES_00053417	chr7	-	321	1	FSM	ENSMUSG00000036864.17	ENSMUST00000208706.2	1292	1	416	555	384	-555	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGGGTGCTTTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	30251308	30250987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30251000_30251300
ES_00053419	chr7	-	8471	37	NIC	ENSMUSG00000006307.17	novel	8469	37	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	26	junction_7	37.8523263632648	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGGTCTTTCCGTGCCTT	NA	False	NA	-22	True	AATAAA	-19	NA	30288140	30268281	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270267_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608_30282888_30283124_30283181_30283341_30283622_30283873_30284025_30284117_30284232_30284418_30286455_30286679_30286753_30287779
ES_00053421	chr7	-	1775	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30292367	30289105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
ES_00053425	chr7	-	617	3	FSM	ENSMUSG00000006315.10	ENSMUST00000207955.2	605	3	0	-12	0	12	multi-exon	FALSE	canonical	3	791	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCTCTCTCTCAGAAACC	9165	False	NA	0	True	AGTAAA	-30	NA	30427909	30427113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30427329_30427411_30427534_30427629
ES_00053426	chr7	-	610	5	FSM	ENSMUSG00000036634.16	ENSMUST00000190638.7	635	5	25	0	5	0	multi-exon	FALSE	canonical	1	1	junction_1	1.29903810567666	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGAGCTGAGCTGGCTG	6639	False	NA	NA	False	NA	NA	NA	30614265	30608607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30608698_30610825_30611195_30611315_30611389_30612248_30612305_30614243
ES_00053434	chr7	-	1753	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	-26	-126	0	126	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTGAGGCAAAGGGTC	NA	False	NA	NA	False	TTTAAA	-2	NA	33929714	33914507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ES_00053435	chr7	-	1311	2	FSM	ENSMUSG00000066571.14	ENSMUST00000206018.2	2055	2	0	744	0	-744	multi-exon	FALSE	canonical	3	60	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGTACTGTCATCATAG	9809	False	NA	NA	False	NA	NA	NA	34012975	33984126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33985379_34012916
ES_00053436	chr7	-	624	3	FSM	ENSMUSG00000066571.14	ENSMUST00000132975.2	624	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATTGAGGGTAGGATG	9814	False	NA	NA	False	NA	NA	NA	34012970	33984901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33985379_34011513_34011602_34012911
ES_00053437	chr7	-	864	7	FSM	ENSMUSG00000066568.13	ENSMUST00000155256.8	864	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	234.453027752303	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAATGCTGATGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	34088904	34052907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34052987_34053089_34053273_34056858_34056922_34065039_34065163_34070479_34070610_34074653_34074818_34088782
ES_00053438	chr7	-	2488	7	FSM	ENSMUSG00000030499.10	ENSMUST00000032709.3	2480	7	0	-8	0	3	multi-exon	FALSE	canonical	1	1	junction_6	13.2664991614216	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTCCGTCCTGTGCAGA	5688	False	NA	-8	True	TATAAA	-11	NA	34354934	34338435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34354704
ES_00053439	chr7	-	1667	3	ISM	ENSMUSG00000060402.9	ENSMUST00000238947.2	2699	4	5591	308	5591	-17	3prime_fragment	FALSE	canonical	3	13	junction_1	0.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGTTTTCAGAGCAGTG	NA	False	NA	-16	True	AATAAA	-3	NA	34447646	34374200	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_34375670_34376059_34376098_34447486
ES_00053440	chr7	-	4294	7	NIC	ENSMUSG00000001802.17	novel	4147	8	NA	NA	-54	0	intron_retention	FALSE	canonical	3	19	junction_5	5.04700130990891	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCTGTTCCAGTCTCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	34914771	34900302	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_34902095_34902353_34902487_34902692_34904321_34905461_34905601_34910859_34910923_34912564_34912613_34914280
ES_00053441	chr7	-	217	2	Antisense	novelGene_ENSMUSG00000030494.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	293	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATCCTCACCAATGTCAC	NA	False	NA	NA	False	NA	NA	NA	35038655	35025718	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_35025883_35038602
ES_00053442	chr7	-	5065	19	NIC	ENSMUSG00000030491.17	novel	3651	30	NA	NA	14636	2168	combination_of_known_junctions	FALSE	canonical	3	22	junction_16	9.13006159296628	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAATGCAAAGGAAC	NA	False	NA	11	True	AATAAA	-35	NA	35189797	35166354	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_35168618_35169090_35169158_35169241_35169396_35169477_35169592_35169681_35169746_35170616_35170727_35175357_35175531_35177478_35177572_35179565_35179777_35180441_35180630_35182464_35182565_35184629_35184851_35185024_35185165_35185844_35185963_35186578_35186708_35186956_35187149_35188061_35188190_35188623_35188781_35189354
ES_00053443	chr7	-	3341	26	FSM	ENSMUSG00000030491.17	ENSMUST00000187190.7	3341	26	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_14	220.748928876224	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGTGCCTGTATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	35236963	35170616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35170727_35175357_35175531_35177478_35177572_35179565_35179777_35180441_35180630_35182464_35182565_35184629_35184851_35185024_35185165_35185844_35185963_35186578_35186708_35186956_35187149_35188061_35188190_35188623_35188781_35189354_35189541_35193254_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ES_00053444	chr7	-	312	1	FSM	ENSMUSG00000056043.6	ENSMUST00000069912.6	6590	1	5955	323	5955	-323	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACACCCTAGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	35279052	35278740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35278700_35279100
ES_00053445	chr7	-	438	3	FSM	ENSMUSG00000030417.16	ENSMUST00000130306.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	1783	junction_1	61.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGGTGCCCCTTGACA	NA	False	NA	NA	False	TATAAA	-40	NA	35346905	35343612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35343838_35345568_35345607_35346730
ES_00053446	chr7	-	1994	13	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	0	62712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.639538707279	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAAAAGTGAATCAGCC	NA	False	NA	NA	False	NA	NA	NA	37806927	37734696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_37734726_37797411_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ES_00053447	chr7	-	1995	13	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	0	62712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.639538707279	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAAAAGTGAATCAGCC	NA	False	NA	NA	False	NA	NA	NA	37806927	37734696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_37734728_37797412_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ES_00053448	chr7	-	892	7	FSM	ENSMUSG00000030423.8	ENSMUST00000206221.2	892	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	122.480950899858	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCTGTGTCCCCAGG	NA	False	NA	NA	False	NA	NA	NA	37970751	37963751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37967894_37968084_37968325_37968379_37970570
ES_00053449	chr7	-	671	1	FSM	ENSMUSG00000092193.2	ENSMUST00000174687.2	650	1	-82	61	-82	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATCTTCAGCATGATCGA	NA	False	NA	NA	False	NA	NA	NA	41332813	41332142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41332100_41332800
ES_00053450	chr7	-	980	1	FSM	ENSMUSG00000092257.2	ENSMUST00000166539.3	1004	1	162	-138	162	138	mono-exon	FALSE	NA	NA	NA	NA	NA	745	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTCTCTTGAATACAT	NA	False	NA	NA	False	NA	NA	NA	41775465	41774485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_41774500_41775500
ES_00053451	chr7	-	645	4	NNC	ENSMUSG00000074158.10	novel	4868	3	NA	NA	0	3704	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	36.4783040541452	163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATATATTATATTTCGA	NA	False	NA	NA	False	AATAAA	-17	NA	42291971	42255245	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_42255635_42265396_42265458_42265656_42265784_42291903
ES_00053452	chr7	-	3175	6	NNC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	0	157601	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	88.3583612342375	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAACTATTTATACTGGA	NA	False	NA	NA	False	NA	NA	NA	42516658	42308651	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_42308724_42467138_42469009_42469092_42470028_42471782_42471844_42472041_42472168_42516547
ES_00053455	chr7	-	516	2	Antisense	novelGene_ENSMUSG00000064194.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	38	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTTTTATTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	42804117	42802762	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_42802946_42803784
ES_00053456	chr7	-	359	5	FSM	ENSMUSG00000108695.2	ENSMUST00000205521.2	457	5	0	98	0	-98	multi-exon	TRUE	canonical	1	1	junction_2	1.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATCATGTACAAAGTTCC	NA	False	NA	NA	False	AAAAAG	-35	NA	43168394	43160689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_43160731_43164995_43165102_43165734_43165829_43166203_43166292_43168364
ES_00053457	chr7	-	959	3	ISM	ENSMUSG00000004473.11	ENSMUST00000004587.11	2978	4	567	1596	567	-1596	3prime_fragment	FALSE	canonical	1	1	junction_2	1	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGCCGGAGCATAAAAATT	NA	False	NA	NA	False	TTTAAA	-39	NA	43955759	43953706	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_43954411_43955252_43955445_43955696
ES_00053458	chr7	-	895	6	FSM	ENSMUSG00000008028.16	ENSMUST00000107933.8	913	6	18	0	18	0	multi-exon	FALSE	canonical	2	11	junction_3	8.25590697622012	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTCTCTCGGCAAAGT	NA	False	NA	NA	False	TATAAA	-19	NA	44024436	44009466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44009806_44010473_44010608_44012075_44012197_44012366_44012440_44023746_44023949_44024410
ES_00053459	chr7	-	1247	7	FSM	ENSMUSG00000038644.15	ENSMUST00000136225.8	1237	7	0	-10	0	2	multi-exon	FALSE	canonical	3	1378	junction_5	52.2092477972586	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTGTGGTCTTTGGG	NA	False	NA	0	True	AATAAA	-23	NA	44184515	44182167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183912_44183987_44184141_44184440
ES_00053463	chr7	-	1961	10	NIC	ENSMUSG00000060601.14	novel	1988	10	NA	NA	-4	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	218.641823340321	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGCCCAGTGTGGAGA	NA	False	NA	1	True	AATAAA	-32	NA	44203339	44199038	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203228
ES_00053464	chr7	-	2003	10	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	206.953087067851	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGCCCAGTGTGGAGA	NA	False	NA	1	True	AATAAA	-32	NA	44203372	44199038	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203228
ES_00053465	chr7	-	1944	10	FSM	ENSMUSG00000060601.14	ENSMUST00000167197.8	1944	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	223.571073020098	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203347	44199075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203228
ES_00053466	chr7	-	1984	10	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	224.012290227209	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203391	44199075	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203232
ES_00053471	chr7	-	5660	36	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	9862	0	-3071	0	3prime_fragment	FALSE	canonical	2	5	junction_31	24.1144211235196	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	1936	False	NA	-1	True	AATAAA	-17	NA	44305063	44255226	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806_44281968_44282358_44282429_44282898_44283021_44283782_44283971_44287188_44287304_44287713_44287888_44288366_44288541_44288659_44288813_44290484_44290604_44292887_44292984_44301854_44301996_44303379_44303479_44304645_44304710_44305015
ES_00053472	chr7	-	3582	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120798.8	3559	5	0	-23	0	0	multi-exon	FALSE	canonical	2	7	junction_4	24.8633766813762	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTTTTAATTTTT	NA	False	NA	-5	True	AATAAA	-24	NA	44397815	44380903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397775
ES_00053473	chr7	-	3647	5	NIC	ENSMUSG00000048012.20	novel	3624	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	16.8077363139716	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAAATAAAGTGTTCGC	NA	False	NA	-40	True	GATAAA	-2	NA	44397473	44380938	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397333
ES_00053474	chr7	-	1737	3	FSM	ENSMUSG00000038539.16	ENSMUST00000107893.9	1735	3	0	-2	0	1	multi-exon	FALSE	canonical	2	5	junction_2	23.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTCTTATCTTTGAG	8931	False	NA	1	True	AATAAA	-20	NA	44465082	44461678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44462945_44464412_44464707_44464905
ES_00053475	chr7	-	659	7	FSM	ENSMUSG00000038502.18	ENSMUST00000207416.2	657	7	0	-2	0	2	multi-exon	FALSE	canonical	3	386	junction_1	156.981598355419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCCCTCCCTGCTTGTG	NA	False	NA	-6	True	AATAAA	-17	NA	44514364	44512488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336
ES_00053480	chr7	-	2294	16	FSM	ENSMUSG00000002968.10	ENSMUST00000207278.2	2287	16	0	-7	0	0	multi-exon	FALSE	canonical	3	12	junction_15	290.277384582402	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	6948	False	NA	-6	True	AATAAA	-17	NA	44541843	44528807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541568
ES_00053484	chr7	-	3445	24	FSM	ENSMUSG00000060279.15	ENSMUST00000166972.9	3449	24	4	0	-2	0	multi-exon	FALSE	canonical	0	0	junction_5	223.313676494837	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGACTGCCCACCCTG	NA	False	NA	-2	True	AATAAA	-25	NA	44578916	44549796	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44552885_44552952_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
ES_00053486	chr7	-	2101	13	ISM	ENSMUSG00000007783.11	ENSMUST00000212836.2	2716	19	7372	1	328	0	3prime_fragment	FALSE	canonical	3	57	junction_9	13.1685125288402	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCACTGTGCTTTTCTGCG	9008	False	NA	-2	True	AATAAA	-20	NA	44616827	44608796	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481
ES_00053490	chr7	-	6023	9	ISM	ENSMUSG00000038406.18	ENSMUST00000085383.11	4293	11	961	0	455	0	intron_retention	FALSE	canonical	3	182	junction_5	30.7896086366813	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	6015	False	NA	-6	True	ATTAAA	-17	NA	44664826	44652371	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640
ES_00053491	chr7	-	5081	12	NIC	ENSMUSG00000038406.18	novel	4209	11	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	85.2363752714854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	5012	False	NA	-6	True	ATTAAA	-17	NA	44665829	44652371	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44663628_44663760_44664888
ES_00053493	chr7	-	4237	4	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	-445	19135	-445	-18443	5prime_fragment	FALSE	canonical	3	13	junction_3	4.10960933531265	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGTGATGTTCATGTGC	NA	False	NA	23	True	ATTAAA	-45	NA	44702750	44696121	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44699553_44699628_44699791_44700641_44700755_44702219
ES_00053497	chr7	-	884	6	FSM	ENSMUSG00000019539.12	ENSMUST00000210469.2	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	67.416911824853	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCAGCCCCTGGTGGAG	6667	False	NA	NA	False	NA	NA	NA	44741638	44733045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
ES_00053498	chr7	-	1793	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2690	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCTGTGTGTGCATCGT	NA	False	NA	-8	True	CATAAA	-9	NA	44755965	44742488	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
ES_00053500	chr7	-	424	2	FSM	ENSMUSG00000110206.2	ENSMUST00000210083.2	619	2	195	0	195	0	multi-exon	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCGGCAGCTCCGACAATC	NA	False	NA	NA	False	NA	NA	NA	44781836	44781322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44781562_44781651
ES_00053501	chr7	-	1645	2	FSM	ENSMUSG00000110206.2	ENSMUST00000210612.2	718	2	400	-1327	400	-441	multi-exon	FALSE	canonical	3	14	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGCCTACCTTATGCC	NA	False	NA	NA	False	NA	NA	NA	44783969	44781978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44783451_44783796
ES_00053506	chr7	-	1122	11	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-12	-15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	13.9513440212762	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCACATAGTAATGACTTCA	9393	False	NA	-19	True	NA	NA	NA	44839502	44833062	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838145_44838276_44838342_44838764_44838825_44839060_44839118_44839373
ES_00053509	chr7	-	1469	4	FSM	ENSMUSG00000003863.19	ENSMUST00000211098.2	1467	4	0	-2	0	1	multi-exon	FALSE	canonical	3	52	junction_1	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGCTTTTGTTCTTAAG	6986	False	NA	-1	True	NA	NA	NA	44990584	44988548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44989442_44989612_44989685_44989998_44990411_44990492
ES_00053510	chr7	-	4150	27	NIC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-450	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_26	19.4975722961549	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGCTTTTGTTCTTAAG	9332	False	NA	-1	True	NA	NA	NA	45009987	44988548	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582_45004715_45005561_45005646_45005733_45005869_45005964_45006112_45007182_45007405_45008211_45008287_45008690_45008766_45009483_45009649_45009959
ES_00053512	chr7	-	3045	11	FSM	ENSMUSG00000063511.12	ENSMUST00000211290.2	3035	11	0	-10	0	0	multi-exon	FALSE	canonical	2	5	junction_3	571.982875617793	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9091	False	NA	0	True	AATAAA	-25	NA	45045116	45025876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45031248_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ES_00053517	chr7	-	397	4	FSM	ENSMUSG00000003868.15	ENSMUST00000209426.2	396	4	0	-1	0	1	multi-exon	FALSE	canonical	3	257	junction_2	1006.24063832774	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	NA	False	NA	-2	True	TATAAA	-17	NA	45072225	45071319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45071430_45071515_45071559_45071808_45071939_45072111
ES_00053518	chr7	-	1832	15	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	0	1	intron_retention	FALSE	canonical	1	15	junction_14	647.047138931933	112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	9182	False	NA	-2	True	TATAAA	-17	NA	45084047	45071319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080795_45083675
ES_00053519	chr7	-	2822	2	FSM	ENSMUSG00000040435.13	ENSMUST00000167273.2	2809	2	0	-13	0	7	multi-exon	FALSE	canonical	3	424	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCTTTATTGGTAGCT	3983	False	NA	52	True	AATAAA	-32	NA	45175570	45172332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45172747_45173162
ES_00053520	chr7	-	1791	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	0	-8	0	1	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGAGCTTCTTTGCTG	8628	False	NA	1	True	AATAAA	-36	NA	45480219	45474645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
ES_00053521	chr7	-	335	5	FSM	ENSMUSG00000030838.21	ENSMUST00000148527.2	395	5	60	0	60	0	multi-exon	FALSE	canonical	1	1	junction_3	4.52769256906871	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAAGGTGGTCGTCTCTGC	1844	False	NA	NA	False	NA	NA	NA	45869131	45850449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45850498_45850792_45850847_45851056_45851099_45868722_45868848_45869065
ES_00053522	chr7	-	1656	11	NIC	ENSMUSG00000030839.13	novel	1465	11	NA	NA	6	3	combination_of_known_junctions	FALSE	canonical	2	9	junction_10	24.9110417285187	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCCTGGAGAACCCTTC	NA	False	NA	-24	True	AATAAA	-21	NA	46288998	46092591	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46288698
ES_00053534	chr7	-	213	1	FSM	ENSMUSG00000049516.10	ENSMUST00000208588.2	1726	1	1469	44	1469	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGACAGTCAGGGCTAAGG	NA	False	NA	NA	False	NA	NA	NA	46656514	46656301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46656300_46656500
ES_00053537	chr7	-	1842	1	FSM	ENSMUSG00000108701.2	ENSMUST00000206417.2	1732	1	-13	-97	-13	97	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAACATTTCTTCAATA	NA	False	NA	NA	False	NA	NA	NA	55578669	55576827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55576800_55578700
ES_00053538	chr7	-	3039	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612187	55581034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
ES_00053539	chr7	-	1453	7	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	452	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTAATTTGGATCAAGAA	NA	False	NA	NA	False	NA	NA	NA	55612187	55582545	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
ES_00053540	chr7	-	636	6	FSM	ENSMUSG00000030452.17	ENSMUST00000126604.8	636	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	74.3300746669879	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGGAAGAGGAGATTGA	NA	False	NA	NA	False	NA	NA	NA	55612178	55585603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
ES_00053541	chr7	-	28685	1	FSM	ENSMUSG00000109536.2	ENSMUST00000208498.2	30942	1	2290	-33	2290	33	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCATATATTGAACTTC	NA	False	NA	NA	False	NA	NA	NA	58902246	58873561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_58873600_58902200
ES_00053542	chr7	-	202	1	FSM	ENSMUSG00000108880.2	ENSMUST00000207816.2	3115	1	2907	6	2907	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACCTATAAAGAAATAATT	NA	False	NA	NA	False	ATTAAA	-35	NA	58936007	58935805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_58935800_58936000
ES_00053543	chr7	-	4181	14	Fusion	ENSMUSG00000102252.6_ENSMUSG00000100826.7	novel	1932	10	NA	NA	0	-4	intron_retention	FALSE	canonical	1	1	junction_3	912.035463340397	137	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGTCATAGTTTGTGTT	NA	False	NA	-10	True	ATTAAA	-16	NA	59654859	59619328	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_59620292_59621627_59621693_59623018_59623399_59630279_59630876_59631997_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ES_00053546	chr7	-	305	1	FSM	ENSMUSG00000108700.2	ENSMUST00000206446.2	505	1	257	-57	257	57	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTTATTAGACGCGTT	NA	False	NA	NA	False	AATAAA	-25	NA	63460821	63460516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_63460500_63460800
ES_00053547	chr7	-	1105	1	FSM	ENSMUSG00000052040.11	ENSMUST00000183907.2	934	1	-59	-112	-59	112	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGAAGGTCTACTTC	NA	False	NA	NA	False	NA	NA	NA	63586139	63585034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_63585000_63586100
ES_00053550	chr7	-	4484	6	FSM	ENSMUSG00000030509.18	ENSMUST00000131320.8	4484	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	17.8594512793647	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGAATTTGTGTTTTCTT	NA	False	NA	-2	True	ATTAAA	-32	NA	66338632	66294312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66338570
ES_00053551	chr7	-	3269	11	NIC	ENSMUSG00000030557.18	novel	4759	11	NA	NA	6	442	combination_of_known_junctions	FALSE	canonical	3	7	junction_9	12.5713961038542	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATAAGGCGTTATTTAA	NA	False	NA	NA	False	TATAAA	-16	NA	67022569	66883138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999596_66999670_67022460
ES_00053552	chr7	-	2764	9	FSM	ENSMUSG00000030556.14	ENSMUST00000187953.8	2761	9	0	-3	0	1	multi-exon	FALSE	canonical	3	8	junction_7	25.6709953059869	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTCTCTCCTCCTGTT	596	False	NA	-1	True	AATAAA	-17	NA	67294955	67163156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67290851_67291089_67294925
ES_00053554	chr7	-	2025	1	FSM	ENSMUSG00000109115.2	ENSMUST00000207774.2	1969	1	37	-93	37	93	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCCTAGGTTTCTAAGA	7522	False	NA	NA	False	NA	NA	NA	67331014	67328989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_67329000_67331000
ES_00053556	chr7	-	940	4	FSM	ENSMUSG00000030553.4	ENSMUST00000032770.4	953	4	16	-3	16	3	multi-exon	FALSE	canonical	1	1	junction_3	2.49443825784929	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTGTTTGTTTATTT	NA	False	NA	NA	False	AAAAAG	-18	NA	67913965	67886354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_67886871_67887389_67887617_67888819_67888943_67913891
ES_00053557	chr7	-	652	5	FSM	ENSMUSG00000030553.4	ENSMUST00000207874.2	677	5	25	0	25	0	multi-exon	FALSE	canonical	1	2	junction_3	2.12132034355964	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGCAGCAGGGGGATGC	NA	False	NA	NA	False	AAGAAA	-36	NA	67913956	67886686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_67886871_67887389_67887617_67888819_67888943_67908984_67909038_67913891
ES_00053558	chr7	-	451	1	FSM	ENSMUSG00000030551.15	ENSMUST00000207153.2	2164	1	1483	230	1483	-230	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGGTGTGGTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	70003502	70003051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_70003100_70003500
ES_00053560	chr7	-	2772	16	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	16	63625	6	7444	5prime_fragment	FALSE	canonical	3	19	junction_14	8.62142035217451	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGAAACTTTCTGATG	NA	False	NA	-7	True	NA	NA	NA	73191478	73140010	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ES_00053561	chr7	-	359	1	FSM	ENSMUSG00000108337.2	ENSMUST00000205991.2	1108	1	938	-189	938	189	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCATACATAAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	73335411	73335052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_73335100_73335400
ES_00053562	chr7	-	422	2	ISM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	-21	10642	-21	-10642	5prime_fragment	FALSE	canonical	3	32	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGGTGACTGGAAGAC	NA	False	NA	NA	False	NA	NA	NA	75431868	75430151	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_75430505_75431799
ES_00053563	chr7	-	3850	22	NNC	ENSMUSG00000039176.18	novel	7837	23	NA	NA	0	291	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	96.5650415846016	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAAAGGCAGCCATTTT	NA	False	NA	NA	False	NA	NA	NA	79115942	79099622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109355_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79114351_79115120_79115817
ES_00053566	chr7	-	1994	11	FSM	ENSMUSG00000030549.7	ENSMUST00000032766.5	2090	11	96	0	96	0	multi-exon	FALSE	canonical	2	10	junction_10	3.38969025133566	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGGAGTGGATGTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	79267309	79243110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79243549_79244529_79244737_79248288_79248363_79248717_79248843_79249104_79249242_79249426_79249565_79250241_79250409_79251334_79251483_79253487_79253639_79257292_79257480_79267087
ES_00053568	chr7	-	4113	7	NNC	ENSMUSG00000063801.8	novel	5813	6	NA	NA	1	-977	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.726365273589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGGCTATAGGTCAGT	NA	False	NA	NA	False	NA	NA	NA	79570396	79526049	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_79527736_79528457_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ES_00053571	chr7	-	808	5	FSM	ENSMUSG00000030538.16	ENSMUST00000205996.2	487	5	-27	-294	0	63	multi-exon	FALSE	canonical	3	33	junction_4	331.461441950644	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGTACCAAGAATTGAAC	2240	False	NA	NA	False	NA	NA	NA	79882372	79877516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882257
ES_00053574	chr7	-	409	2	FSM	ENSMUSG00000038886.11	ENSMUST00000206973.2	537	2	128	0	-38	0	multi-exon	FALSE	canonical	3	86	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCCCGGGGTGTAGGG	5443	False	NA	NA	False	NA	NA	NA	80009531	80008881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80009143_80009383
ES_00053577	chr7	-	407	2	FSM	ENSMUSG00000030527.16	ENSMUST00000127182.2	579	2	172	0	172	0	multi-exon	FALSE	canonical	3	20	junction_1	0	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCCAGTCAGCCCT	NA	False	NA	NA	False	NA	NA	NA	80248712	80245467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80245657_80248494
ES_00053581	chr7	-	918	7	NNC	ENSMUSG00000025724.13	novel	728	7	NA	NA	0	47030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	367.667271078379	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTAAGAGAAGACAGGCAA	1654	False	NA	NA	False	NA	NA	NA	80597259	80507606	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_80507635_80565310_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ES_00053582	chr7	-	2112	1	FSM	ENSMUSG00000109390.2	ENSMUST00000207577.2	3794	1	1674	8	1674	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTATTTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	80562240	80560128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80560100_80562200
ES_00053585	chr7	-	10805	9	FSM	ENSMUSG00000025813.15	ENSMUST00000207983.2	1634	9	-135	-9036	0	-213	multi-exon	FALSE	canonical	3	22	junction_5	5.73230974389905	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTTCTTAATTCATT	NA	False	NA	NA	False	AATATA	-18	NA	81356692	81250441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268464_81273999_81274093_81286108_81286241_81299301_81299459_81356506
ES_00053586	chr7	-	791	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	106.699051073569	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439203	81431929	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439175
ES_00053587	chr7	-	2793	6	NIC	ENSMUSG00000025103.9	novel	3001	8	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	2	68	junction_5	258.291773001	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	81479234	81441821	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81478720
ES_00053589	chr7	-	1376	3	FSM	ENSMUSG00000038570.16	ENSMUST00000151632.8	2026	3	4	646	-1	-646	multi-exon	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGGCCTATCCTTTTA	NA	False	NA	NA	False	NA	NA	NA	82297732	82291994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_82293058_82294857_82295038_82297599
ES_00053590	chr7	-	1682	8	NNC	ENSMUSG00000030629.16	novel	967	8	NA	NA	0	11095	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	232.454252686065	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAGAATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84339091	84251878	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_84251959_84264252_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ES_00053591	chr7	-	1590	7	NIC	ENSMUSG00000030629.16	novel	2955	7	NA	NA	9	9	combination_of_known_junctions	FALSE	canonical	3	150	junction_5	197.190615620746	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTTTCCCTCTTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	84339082	84264252	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283199_84283446_84283618_84338953
ES_00053593	chr7	-	489	1	FSM	ENSMUSG00000068629.5	ENSMUST00000173735.2	341	1	33	-181	33	181	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATAGCTATAGGAGTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	84484054	84483565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_84483600_84484100
ES_00053594	chr7	-	539	2	Genic_Genomic	ENSMUSG00000069972.7	novel	453	1	NA	NA	0	2327	multi-exon	TRUE	non_canonical	0	0	junction_1	0	134	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTGAAGTATGACTCCC	NA	False	NA	NA	False	NA	NA	NA	88180106	88177326	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_88177359_88179599
ES_00053595	chr7	-	566	2	Genic_Genomic	ENSMUSG00000069972.7	novel	453	1	NA	NA	-28	2327	multi-exon	TRUE	non_canonical	0	0	junction_1	0	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTGAAGTATGACTCCC	NA	False	NA	NA	False	NA	NA	NA	88180134	88177326	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_88177358_88179599
ES_00053597	chr7	-	1603	13	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	0	11572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	671.694928065479	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGTGAAAAAGAGACAAGAGA	NA	False	NA	NA	False	NA	NA	NA	89629763	89592289	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_89592331_89603938_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ES_00053598	chr7	-	1535	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	5	-4	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTACTTTAACTCTAGAA	NA	False	NA	-12	True	AATAAA	-23	NA	89629758	89603871	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ES_00053599	chr7	-	4489	3	FSM	ENSMUSG00000030619.11	ENSMUST00000207609.2	774	3	-3715	0	2174	0	multi-exon	FALSE	canonical	3	1777	junction_2	301.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCATAAATGTGGCGCGGC	NA	False	NA	NA	False	NA	NA	NA	89609861	89604255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89604272_89604738_89604813_89605462
ES_00053600	chr7	-	671	1	FSM	ENSMUSG00000109038.2	ENSMUST00000208880.2	408	1	-296	33	-296	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTCTCGAAAAAGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89614898	89614227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89614200_89614900
ES_00053601	chr7	-	6208	16	NIC	ENSMUSG00000041328.17	novel	5995	16	NA	NA	11	-169	intron_retention	FALSE	canonical	3	46	junction_9	61.6724681955679	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTGTATTTCTTGA	NA	False	NA	-2	True	AATAAA	-16	NA	92319131	92292919	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92308612_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
ES_00053602	chr7	-	7286	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	30	-3484	21	13	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATTAAAAGATAC	NA	False	NA	NA	False	NA	NA	NA	92390646	92383360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_92383400_92390600
ES_00053603	chr7	-	641	1	FSM	ENSMUSG00000108528.2	ENSMUST00000205708.2	641	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTCTAGCGCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	95852743	95852102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_95852100_95852700
ES_00053604	chr7	-	1142	2	NNC	ENSMUSG00000035713.16	novel	2659	8	NA	NA	4224	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGTGCAGGATGCTGTT	NA	False	NA	-1	True	AATAAA	-15	NA	96960008	96958613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_96959704_96959956
ES_00053605	chr7	-	741	4	FSM	ENSMUSG00000035642.17	ENSMUST00000178078.8	723	4	0	-18	0	18	multi-exon	FALSE	canonical	3	45	junction_3	26.7124606795322	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACAGTTCATGCTTTGGG	NA	False	NA	NA	False	NA	NA	NA	97224860	97199519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794
ES_00053606	chr7	-	636	3	FSM	ENSMUSG00000035642.17	ENSMUST00000124552.3	618	3	0	-18	0	0	multi-exon	FALSE	canonical	0	0	junction_2	49.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCATTAGCGATCT	NA	False	NA	NA	False	AATAAA	-28	NA	97228704	97199540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97199949_97207337_97207434_97228572
ES_00053607	chr7	-	320	1	FSM	ENSMUSG00000108405.2	ENSMUST00000206623.2	710	1	227	163	227	-163	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCCAAGACCACCTTC	NA	False	NA	NA	False	NA	NA	NA	97241382	97241062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97241100_97241400
ES_00053613	chr7	-	6030	20	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	34	59	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	21.2537759395772	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCGTGTTTTGAGAATA	3540	False	NA	NA	False	NA	NA	NA	98305952	98238083	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ES_00053614	chr7	-	3564	20	FSM	ENSMUSG00000035401.10	ENSMUST00000038359.6	3564	20	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	22.53037346632	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAGAAAGAAAAA	3734	False	NA	NA	False	NA	NA	NA	98305758	98239806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98240092_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ES_00053615	chr7	-	3582	17	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	0	-73	combination_of_known_splicesites	FALSE	canonical	2	4	junction_8	29.6054788003842	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTTAGAGCCTGCGTGG	3721	False	NA	NA	False	NA	NA	NA	98305771	98239879	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ES_00053617	chr7	-	3437	16	NNC	ENSMUSG00000035354.10	novel	5157	15	NA	NA	0	1174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.2438049513068	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCCAAAACCTAGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	98790335	98533053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_98533079_98535959_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390_98637452_98638741_98638830_98641130_98641216_98653786_98653914_98665775_98665882_98715006_98715090_98737307_98737383_98748518_98748681_98758269_98758305_98767394_98767513_98790040
ES_00053618	chr7	-	4679	10	NNC	ENSMUSG00000035354.10	novel	5157	15	NA	NA	-15829	36	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_9	49.6083425879255	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGAGTCCTGTCTTCTC	NA	False	NA	1	True	NA	NA	NA	98681680	98534191	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390_98637452_98638741_98638830_98641130_98641216_98653786_98653914_98665775_98665882_98681413
ES_00053619	chr7	-	1193	7	NIC	ENSMUSG00000035354.10	novel	366	4	NA	NA	16	359	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	61.1539496316923	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTCTCTCGGCTAGAGA	NA	False	NA	NA	False	AATAAA	-21	NA	98790309	98704910	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_98705362_98715006_98715090_98737307_98737383_98748518_98748681_98758269_98758305_98767394_98767513_98790040
ES_00053620	chr7	-	2151	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	0	-23	0	4	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGTGATTTATGCAGA	NA	False	NA	NA	False	ATTAAA	-34	NA	99002321	98994578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
ES_00053621	chr7	-	234	1	Intergenic	novelGene_3768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2050	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAGAAACTAAGAGCCAA	NA	False	NA	NA	False	NA	NA	NA	99081064	99080830	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_99080800_99081100
ES_00053623	chr7	-	808	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5573.73945141161	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAAGGCCTGACT	8439	False	NA	-45	True	AATAAA	-25	NA	99132841	99128099	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130998_99131465_99131562_99131776_99131908_99132798
ES_00053624	chr7	-	3183	4	FSM	ENSMUSG00000030744.14	ENSMUST00000128725.2	3183	4	0	0	0	0	multi-exon	FALSE	canonical	3	13120	junction_3	644.451877351771	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAAGGCCTGACT	8423	False	NA	-45	True	AATAAA	-25	NA	99132857	99128099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99130999_99131467_99131562_99131776_99131908_99132798
ES_00053626	chr7	-	2461	4	FSM	ENSMUSG00000030726.17	ENSMUST00000130413.8	748	4	-238	-1475	-238	3	multi-exon	FALSE	canonical	3	528	junction_3	29.9592315581618	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCGAGTTGGAGTTGT	NA	False	NA	-1	True	AATAAA	-21	NA	99743109	99731314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578
ES_00053627	chr7	-	2463	15	NNC	ENSMUSG00000030718.10	novel	2772	14	NA	NA	-40	14193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.085701925156	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTACTTCTCTGCATG	NA	False	NA	NA	False	NA	NA	NA	100021181	99961750	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99961778_99975945_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004006_100004472_100004569_100020929
ES_00053628	chr7	-	2374	14	NNC	ENSMUSG00000030718.10	novel	2772	14	NA	NA	23	-2	at_least_one_novel_splicesite	FALSE	non_canonical	1	105	junction_12	74.9147049500395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTCTGAGGAGCTGTC	NA	False	NA	-10	True	AATAAA	-15	NA	100021118	99975945	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004008_100004473_100004569_100020929
ES_00053631	chr7	-	816	6	ISM	ENSMUSG00000030708.15	ENSMUST00000154516.3	905	7	2995	-67	-20	7	3prime_fragment	FALSE	canonical	3	47	junction_4	7.5736384915046	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGGAAGTGAGTTGGAG	NA	False	NA	-2	True	AATAAA	-20	NA	100161008	100152220	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100159901_100160064_100160956
ES_00053632	chr7	-	346	2	FSM	ENSMUSG00000008318.11	ENSMUST00000142885.2	346	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTTGTGGTGAGTTGG	2206	False	NA	NA	False	NA	NA	NA	100512605	100502263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100502323_100512318
ES_00053633	chr7	-	10190	21	FSM	ENSMUSG00000032875.9	ENSMUST00000107032.3	10190	21	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	4.18658572108586	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACAGCTGCATGTCTTTG	9543	False	NA	NA	False	NA	NA	NA	100581314	100518958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385_100530600_100530899_100531019_100531426_100531513_100531616_100531727_100531979_100532031_100532322_100532500_100532676_100532770_100532974_100533092_100534883_100535067_100539627_100539706_100577775
ES_00053635	chr7	-	557	2	Genic_Genomic	ENSMUSG00000083121.4	novel	411	1	NA	NA	-69	3832	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTCACTATATAGATAAC	NA	False	NA	NA	False	NA	NA	NA	100804331	100800019	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_100800062_100803816
ES_00053636	chr7	-	256	1	Intergenic	novelGene_3774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTGTCATTCTTTACCA	7181	False	NA	NA	False	NA	NA	NA	100952491	100952235	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_100952200_100952500
ES_00053639	chr7	-	1286	7	FSM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	140.150415229099	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	1560	False	NA	0	True	AATAAA	-31	NA	101519890	101507537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363_101518512_101519815
ES_00053640	chr7	-	1084	6	NIC	ENSMUSG00000001827.13	novel	1286	7	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	123.544971569061	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3230	False	NA	0	True	AATAAA	-31	NA	101518220	101507537	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518199
ES_00053641	chr7	-	1218	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106985.8	1313	7	1383	16	0	-16	3prime_fragment	FALSE	canonical	2	5	junction_5	126.640277952948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTTATGAATTATTTG	2919	False	NA	-16	True	AATAAA	-15	NA	101518531	101507553	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517762_101518363
ES_00053642	chr7	-	822	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	0	-1	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.93700393700591	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTCCCCTGTACCTTG	2525	False	NA	NA	False	AATAAA	-23	NA	101583075	101562195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
ES_00053645	chr7	-	6636	34	NNC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	-1	28694	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.6475227261615	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAAGTGCTGAGTCAAA	10003	False	NA	NA	False	NA	NA	NA	101859350	101739910	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_101739939_101768606_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ES_00053646	chr7	-	1715	5	FSM	ENSMUSG00000070424.13	ENSMUST00000106937.8	1713	5	0	-2	0	1	multi-exon	FALSE	canonical	1	2	junction_3	2.12132034355964	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCTTTTATGACTGGT	NA	False	NA	NA	False	ATTAAA	-19	NA	101749436	101746084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101746428_101746514_101746548_101746987_101747718_101748640_101748851_101749037
ES_00053647	chr7	-	4052	23	FSM	ENSMUSG00000063550.9	ENSMUST00000070165.7	4052	23	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_13	31.0306766371922	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATCTCAGGAAAATCC	9998	False	NA	-5	True	AATAAA	-15	NA	101859327	101783409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ES_00053648	chr7	-	230	1	FSM	ENSMUSG00000110251.2	ENSMUST00000211398.2	537	1	155	152	155	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAATGGCAGTTTAATT	NA	False	NA	NA	False	NA	NA	NA	102297218	102296988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_102297000_102297200
ES_00053649	chr7	-	897	1	FSM	ENSMUSG00000082154.2	ENSMUST00000117815.2	1095	1	185	13	185	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTCTCTTAAGAGACTC	NA	False	NA	NA	False	NA	NA	NA	104151171	104150274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_104150300_104151200
ES_00053650	chr7	-	3528	13	NIC	ENSMUSG00000044465.20	novel	3521	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_12	109.915118765952	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049202	105027816	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
ES_00053651	chr7	-	2791	12	NIC	ENSMUSG00000044465.20	novel	10853	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	116.391402937184	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049192	105027816	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105033581_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ES_00053652	chr7	-	3414	12	FSM	ENSMUSG00000044465.20	ENSMUST00000137158.8	3414	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_9	116.481616326993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049192	105027816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038132_105038460_105039100_105039227_105039560_105049090
ES_00053653	chr7	-	2856	12	FSM	ENSMUSG00000044465.20	ENSMUST00000118726.8	2855	12	0	-1	0	0	multi-exon	FALSE	canonical	3	18	junction_3	116.98315199737	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049215	105027816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105033581_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ES_00053654	chr7	-	3523	13	FSM	ENSMUSG00000044465.20	ENSMUST00000122327.7	3521	13	0	-2	0	0	multi-exon	FALSE	canonical	3	82	junction_12	109.388038905337	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	-10	True	TATAAA	-14	NA	105049239	105027816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
ES_00053655	chr7	-	623	4	FSM	ENSMUSG00000044465.20	ENSMUST00000136298.2	623	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	85.8525868373613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAACCTCAGCTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	105038318	105034594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105034630_105037390_105037559_105037762_105037850_105037985
ES_00053656	chr7	-	3687	12	FSM	ENSMUSG00000030894.6	ENSMUST00000210840.2	3687	12	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_11	25.7614613824989	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGAGTGATTTTTTTT	NA	False	NA	4	True	AATAAA	-30	NA	105401420	105395125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105400937_105401188_105401261_105401377
ES_00053661	chr7	-	1447	1	FSM	ENSMUSG00000086261.2	ENSMUST00000130985.2	1447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACAAAGGTCACAGCCTA	NA	False	NA	NA	False	NA	NA	NA	106799396	106797949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_106797900_106799400
ES_00053662	chr7	-	215	1	Intergenic	novelGene_3794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAGCTTCAGAGGTTAA	NA	False	NA	NA	False	NA	NA	NA	107551906	107551691	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_107551700_107551900
ES_00053663	chr7	-	1871	5	ISM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	32	8797	15	-1363	5prime_fragment	FALSE	canonical	3	26	junction_1	16.0312195418814	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTGCATCATTTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	108682497	108645951	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ES_00053665	chr7	-	871	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	41	0	41	0	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTACAGTCTGTCTTCT	NA	False	NA	-107	True	NA	NA	NA	108774373	108737881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
ES_00053666	chr7	-	2180	13	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51248	7	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	19.7188573029304	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTCACGTGTCCTTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	108986776	108878422	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
ES_00053671	chr7	-	372	1	Intergenic	novelGene_3798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTATACAGAGAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	109396675	109396303	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_109396300_109396700
ES_00053672	chr7	-	2853	7	ISM	ENSMUSG00000007279.15	ENSMUST00000132113.8	2473	17	30272	-1709	-2424	1291	3prime_fragment	FALSE	canonical	1	1	junction_6	2.5603819159562	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	109409862	109396591	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_109398613_109399780_109399861_109403814_109403968_109405249_109405448_109407615_109407778_109408284_109408453_109409791
ES_00053673	chr7	-	318	1	Intergenic	novelGene_3802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAAATAAATATTTTTT	NA	False	NA	NA	False	NA	NA	NA	109707804	109707486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_109707500_109707800
ES_00053674	chr7	-	7166	41	FSM	ENSMUSG00000038371.16	ENSMUST00000033058.14	7154	41	0	-12	0	3	multi-exon	TRUE	canonical	3	12	junction_13	24.8098266821838	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGAGTGCTGTGATGTCA	NA	False	NA	NA	False	ATTAAA	-23	NA	110214127	109907216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109940496_109940572_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
ES_00053675	chr7	-	7165	41	NIC	ENSMUSG00000038371.16	novel	7154	41	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_12	28.4831529153638	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTGAGTGCTGTGAT	NA	False	NA	NA	False	ATTAAA	-19	NA	110214112	109907220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109947093_109947190_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159551_110213913
ES_00053677	chr7	-	1197	7	NNC	ENSMUSG00000038371.16	novel	404	4	NA	NA	0	6345	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	43.2242216047129	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATCTTTGTTCCTTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	110214112	110055737	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_110056172_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
ES_00053678	chr7	-	2672	1	FSM	ENSMUSG00000110062.2	ENSMUST00000209731.2	2669	1	-13	10	-13	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGAGTATTTCGTCAA	4153	False	NA	NA	False	NA	NA	NA	110368565	110365893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_110365900_110368600
ES_00053679	chr7	-	2288	6	FSM	ENSMUSG00000030788.17	ENSMUST00000175981.8	2333	6	45	0	45	0	multi-exon	FALSE	canonical	1	1	junction_5	53.8182125307038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCTACATATTATTAATA	NA	False	NA	NA	False	NA	NA	NA	110436691	110414352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436369_110436478_110436615
ES_00053680	chr7	-	1199	4	NNC	ENSMUSG00000005610.18	novel	3548	22	NA	NA	0	11010	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3038.3419089292	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCATAGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	110673456	110655946	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_110655986_110671138_110671965_110673035_110673158_110673244
ES_00053682	chr7	-	3838	23	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	0	11010	intron_retention	FALSE	non_canonical	0	0	junction_1	1307.46120148494	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCATAGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	110682226	110655946	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_110655983_110671138_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ES_00053683	chr7	-	3123	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	1	562	1	98	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATCCTTAATGTTTA	NA	False	NA	NA	False	NA	NA	NA	110682223	110671700	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ES_00053687	chr7	-	1768	1	Intergenic	novelGene_3806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCAGGCCCCTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	112860613	112858845	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_112858800_112860600
ES_00053688	chr7	-	943	5	NNC	ENSMUSG00000030669.14	novel	994	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	37.532485928859	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGAGTCTTTGCTGTTA	2079	False	NA	-2	True	ATTAAA	-25	NA	114235547	114230714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234453_114235446
ES_00053689	chr7	-	568	2	FSM	ENSMUSG00000030669.14	ENSMUST00000205560.2	568	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGGAACCATATGCTTA	5746	False	NA	-90	True	NA	NA	NA	114231880	114230802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_114231141_114231650
ES_00053690	chr7	-	858	5	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	-11	-36	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	37.532485928859	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCTCTTCTGGGGACAC	2068	False	NA	NA	False	NA	NA	NA	114235558	114230838	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235422
ES_00053693	chr7	-	1476	2	FSM	ENSMUSG00000091900.4	ENSMUST00000111755.5	978	2	10	-508	10	508	multi-exon	TRUE	non_canonical	3	125	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTTTGGAAGGTTGAT	NA	False	NA	NA	False	AATAAA	-25	NA	115683783	115682093	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115683208_115683421
ES_00053696	chr7	-	8099	35	NNC	ENSMUSG00000030660.10	novel	5670	34	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	18.2547334715587	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCATTTCCTTCC	NA	False	NA	NA	False	AATAAA	-5	NA	116042674	115936499	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_115938228_115938250_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116041825_116041914_116042538
ES_00053698	chr7	-	629	4	FSM	ENSMUSG00000008683.17	ENSMUST00000131840.3	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4781.54105795285	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGATGTTCAACTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	117715352	117709220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117709242_117714007_117714088_117714331_117714470_117714962
ES_00053699	chr7	-	1534	1	FSM	ENSMUSG00000030655.16	ENSMUST00000208930.2	1534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117791514	117789980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117790000_117791500
ES_00053703	chr7	-	451	1	FSM	ENSMUSG00000058420.9	ENSMUST00000207650.2	1794	1	-145	1488	18	-1488	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCGCCGCGGGAGTGCGC	NA	False	NA	NA	False	NA	NA	NA	118047424	118046973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118047000_118047400
ES_00053707	chr7	-	686	2	FSM	ENSMUSG00000008734.10	ENSMUST00000207614.2	686	2	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGGAGCCAGCCTGTCA	8700	False	NA	NA	False	NA	NA	NA	118576005	118574010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118574427_118575735
ES_00053708	chr7	-	692	2	Intergenic	novelGene_3811	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGACTCTGGGGTCCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118622939	118610857	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_118611350_118622739
ES_00053709	chr7	-	3072	3	FSM	ENSMUSG00000048787.14	ENSMUST00000098080.9	3072	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	56	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATATTTATACTCTT	NA	False	NA	-14	True	AATAAA	-9	NA	119494766	119455035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119457280_119458602_119459139_119494474
ES_00053710	chr7	-	2895	3	NNC	ENSMUSG00000048787.14	novel	5985	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	47.5	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATATTTATACTCTT	NA	False	NA	-14	True	AATAAA	-9	NA	119494968	119455035	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_119457280_119458602_119459139_119494853
ES_00053711	chr7	-	1283	8	FSM	ENSMUSG00000030905.6	ENSMUST00000033198.6	1383	8	93	7	93	-7	multi-exon	FALSE	canonical	1	2	junction_4	2.55550625999976	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGTCCTTTGACAA	NA	False	NA	-6	True	AATAAA	-14	NA	119801241	119785609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119785922_119788948_119789034_119789674_119789797_119794547_119794732_119796872_119796975_119798470_119798534_119800299_119800451_119800977
ES_00053712	chr7	-	2351	10	FSM	ENSMUSG00000030872.15	ENSMUST00000144779.2	2351	10	0	0	0	0	multi-exon	FALSE	canonical	3	813	junction_7	23.1362043260619	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTGGTGTTGAGTCCA	NA	False	NA	-5	True	AATAAA	-14	NA	121601714	121587987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297
ES_00053713	chr7	-	1653	2	FSM	ENSMUSG00000030869.12	ENSMUST00000130857.2	1653	2	0	0	0	0	multi-exon	FALSE	canonical	3	4604	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTTTTTCTTTTTCTGTG	NA	False	NA	2	True	AATAAA	-29	NA	121692315	121690040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121690187_121690808
ES_00053714	chr7	-	565	5	FSM	ENSMUSG00000030869.12	ENSMUST00000106471.9	552	5	0	-13	0	0	multi-exon	FALSE	canonical	3	27	junction_1	2300.90270328843	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTTTTTCTTTTTCTGTG	6508	False	NA	2	True	AATAAA	-29	NA	121700959	121690040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121690213_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ES_00053716	chr7	-	1387	11	NNC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	2	-250	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	54.8548083580647	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAAATAGTTTGGAGGTT	NA	False	NA	NA	False	AATATA	-23	NA	121732130	121706739	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712587_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
ES_00053717	chr7	-	1657	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732142	121706484	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
ES_00053718	chr7	-	3304	12	FSM	ENSMUSG00000044702.14	ENSMUST00000106468.7	3304	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	44.3423943183529	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTGCTTGTCGAATTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	121732140	121710794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
ES_00053719	chr7	-	3216	4	FSM	ENSMUSG00000044702.14	ENSMUST00000130149.3	3216	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	6.34209919681348	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGCTGCTTCTGGTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	121732142	121724804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121727667_121728145_121728240_121728896_121728957_121731942
ES_00053720	chr7	-	1289	1	FSM	ENSMUSG00000108452.2	ENSMUST00000205998.2	993	1	-529	233	-529	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAACAGCAAAAAAATAT	NA	False	NA	NA	False	AATAAA	-9	NA	122569802	122568513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122568500_122569800
ES_00053721	chr7	-	7074	1	FSM	ENSMUSG00000030766.16	ENSMUST00000206803.2	3305	1	-103	-3666	-103	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122885567	122878493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122878500_122885600
ES_00053722	chr7	-	3103	19	FSM	ENSMUSG00000030766.16	ENSMUST00000098060.5	3102	19	0	-1	0	1	multi-exon	FALSE	canonical	0	0	junction_18	64.8370226504336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTAATTCTTAGAGGCAA	NA	False	NA	0	True	ATTAAA	-26	NA	122969109	122878492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ES_00053723	chr7	-	7831	7	FSM	ENSMUSG00000030757.14	ENSMUST00000042470.14	7831	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	4.54606056566195	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGGATGTCTTTATTG	NA	False	NA	NA	False	AATAAA	-24	NA	123099672	123074606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_123079996_123084162_123084655_123088801_123089486_123094028_123094156_123094515_123094587_123097808_123097996_123098791
ES_00053724	chr7	-	2216	3	FSM	ENSMUSG00000030757.14	ENSMUST00000128217.2	2218	3	0	2	0	-2	multi-exon	FALSE	canonical	3	13	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACCTTGGTAGCACATTG	NA	False	NA	NA	False	AATAAA	-21	NA	123099672	123093438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_123094587_123097808_123097996_123098791
ES_00053730	chr7	-	3425	9	NNC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	0	35252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.5993981736711	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGGTAGTAGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	125995909	125946773	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_125946810_125982024_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ES_00053731	chr7	-	457	1	FSM	ENSMUSG00000030742.8	ENSMUST00000205398.2	2053	1	-34	1630	-34	-491	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGGAAGCTTTGCGG	NA	False	NA	NA	False	NA	NA	NA	125968776	125968319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_125968300_125968800
ES_00053734	chr7	-	2824	9	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	2030	-1	8	1	3prime_fragment	FALSE	canonical	3	197	junction_2	37.3528362376942	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	9858	False	NA	0	True	AATAAA	-29	NA	126072232	126066164	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244
ES_00053735	chr7	-	2962	9	FSM	ENSMUSG00000030733.11	ENSMUST00000205733.2	2956	9	0	-6	0	1	multi-exon	FALSE	canonical	1	2	junction_1	111.235111363274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	8485	False	NA	0	True	AATAAA	-29	NA	126073994	126066164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126066946_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
ES_00053736	chr7	-	3017	9	FSM	ENSMUSG00000030733.11	ENSMUST00000205889.2	3011	9	0	-6	0	1	multi-exon	FALSE	canonical	2	5	junction_1	110.55477997355	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	8483	False	NA	0	True	AATAAA	-29	NA	126073996	126066164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126066946_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
ES_00053738	chr7	-	3271	10	NIC	ENSMUSG00000030733.11	novel	3393	10	NA	NA	-120	1	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	104.035369104413	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	7763	False	NA	0	True	AATAAA	-29	NA	126074716	126066164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074356
ES_00053739	chr7	-	3990	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	247.412454204056	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	9414	False	NA	-5	True	NA	NA	NA	126102609	126090884	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00053740	chr7	-	3894	24	FSM	ENSMUSG00000032637.16	ENSMUST00000206577.2	3894	24	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_2	297.839161883737	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGACTTTTACTTTTTA	9496	False	NA	-78	True	NA	NA	NA	126102527	126090957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126091388_126091615_126091781_126091929_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ES_00053743	chr7	-	1931	3	NNC	ENSMUSG00000030720.17	novel	1571	14	NA	NA	787	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	82	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	8151	False	NA	-2	True	AATAAA	-18	NA	126173472	126171257	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126171559_126171642_126173194_126173393
ES_00053744	chr7	-	1568	15	NIC	ENSMUSG00000030720.17	novel	2487	17	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_13	60.1732617411706	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126183388	126171257	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182474_126182620_126183345
ES_00053749	chr7	-	1284	8	FSM	ENSMUSG00000030711.17	ENSMUST00000106373.9	1289	8	0	5	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACCTTCTCCCTCTTGC	9808	False	NA	NA	False	AATAAA	-17	NA	126275604	126272041	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126272428_126272588_126272770_126273258_126273354_126273442_126273570_126274220_126274319_126274399_126274526_126274615_126274756_126275473
ES_00053750	chr7	-	848	5	ISM	ENSMUSG00000030707.16	ENSMUST00000106364.8	1747	11	3007	7	14	-7	3prime_fragment	FALSE	canonical	3	11	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTACCTCTCAGACTCCG	NA	False	NA	NA	False	AATAAA	-14	NA	126300385	126298951	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163
ES_00053751	chr7	-	301	4	FSM	ENSMUSG00000030697.8	ENSMUST00000206353.2	301	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	1252.82826702891	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGGCAGTACCTGAGCT	8522	False	NA	NA	False	NA	NA	NA	126388216	126386391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126386519_126387288_126387391_126387555_126387607_126388195
ES_00053760	chr7	-	1023	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	8	-90	8	41	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGAGACAGTTTCTCTATG	6227	False	NA	88	True	NA	NA	NA	126497440	126485301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
ES_00053761	chr7	-	2542	7	NIC	ENSMUSG00000030678.8	novel	2282	6	NA	NA	0	30	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	310.082784645219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTGTTGTGTGTGCTCA	NA	False	NA	3	True	AATAAA	-37	NA	126626196	126621271	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
ES_00053762	chr7	-	2497	4	ISM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	-73	-4	1	0	intron_retention	FALSE	canonical	3	463	junction_1	152.057737572133	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	257	False	NA	-27	True	AATAAA	-18	NA	126625697	126621301	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475
ES_00053766	chr7	-	3556	6	ISM	ENSMUSG00000042502.11	ENSMUST00000205316.2	2912	7	-183	0	-120	0	intron_retention	FALSE	canonical	3	578	junction_3	18.2274518241031	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5288	False	NA	-1	True	NA	NA	NA	126795342	126791196	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532
ES_00053767	chr7	-	2536	2	FSM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	-178	-2	-12	2	multi-exon	FALSE	canonical	3	6	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCGTCCTTAAGATGTGT	5143	False	NA	1	True	AATAAA	-18	NA	126944773	126941964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126944048_126944320
ES_00053769	chr7	-	989	3	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	25.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6926	False	NA	-4	True	ATTAAA	-17	NA	127021198	127018138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_127018814_127019181_127019278_127020980
ES_00053770	chr7	-	737	4	FSM	ENSMUSG00000057176.5	ENSMUST00000206891.2	935	4	198	0	198	0	multi-exon	FALSE	canonical	3	22	junction_2	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCCACAGTGTCCCAT	NA	False	NA	-31	True	AATAAA	-3	NA	127184696	127182558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316
ES_00053771	chr7	-	479	5	FSM	ENSMUSG00000030814.18	ENSMUST00000206200.2	479	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	255.328587314464	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTCGGCCAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	127307634	127266123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127266219_127304898_127304985_127306347_127306510_127306604_127306714_127307607
ES_00053775	chr7	-	1278	6	NIC	ENSMUSG00000070371.12	novel	3028	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_4	32.2093154227158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534618
ES_00053800	chr7	-	1260	5	NNC	ENSMUSG00000040139.15	novel	699	5	NA	NA	26	5	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	92.2506775042872	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCTTGGTGTGTTGT	NA	False	NA	-2	True	ATTAAA	-19	NA	137012435	136977297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_136978081_136978661_136978847_136989099_136989163_136989268_136989431_137012368
ES_00053801	chr7	-	2844	17	FSM	ENSMUSG00000025474.10	ENSMUST00000210224.2	2837	17	0	-7	0	7	multi-exon	FALSE	canonical	1	4	junction_13	123.732827091278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAATGATTTCCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	139616175	139575860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ES_00053804	chr7	-	2610	15	FSM	ENSMUSG00000025474.10	ENSMUST00000211186.2	2610	15	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_14	66.201801874485	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCGAGCAGTTGTGCAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	139616303	139578440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
ES_00053807	chr7	-	895	4	FSM	ENSMUSG00000025466.20	ENSMUST00000121115.2	872	4	0	-23	0	23	multi-exon	FALSE	canonical	3	247	junction_3	108.533660933167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAACAGACACCGTGACCA	1506	False	NA	NA	False	NA	NA	NA	139682319	139680446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_139681102_139681244_139681316_139681513_139681583_139682219
ES_00053813	chr7	-	1105	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	2	-259	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	62.3475919520732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGGCTGCCTTTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	140461738	140443841	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
ES_00053814	chr7	-	656	5	NIC	ENSMUSG00000025486.18	novel	784	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	87.272561552873	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTGAAAGGCATGTGG	NA	False	NA	NA	False	NA	NA	NA	140461740	140449401	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140449564_140456266_140456368_140457562_140457796_140457869_140457965_140461675
ES_00053815	chr7	-	784	5	FSM	ENSMUSG00000025486.18	ENSMUST00000147331.9	784	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	70.4072972070367	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTGAAAGGCATGTGG	NA	False	NA	NA	False	NA	NA	NA	140461782	140449401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
ES_00053820	chr7	-	706	3	NNC	ENSMUSG00000025492.7	novel	678	2	NA	NA	0	33545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGCTGGGCGGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	140590683	140555953	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_140555988_140589504_140589803_140590309
ES_00053821	chr7	-	699	3	NNC	ENSMUSG00000025492.7	novel	678	2	NA	NA	0	7898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGATAGATGTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	140590683	140581600	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_140581625_140589501_140589803_140590309
ES_00053827	chr7	-	1107	6	NNC	ENSMUSG00000025499.19	novel	1199	5	NA	NA	0	8359	intron_retention	FALSE	non_canonical	0	0	junction_1	229.683782622979	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATGTGAGTACA	NA	False	NA	NA	False	NA	NA	NA	140773795	140760658	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_140760690_140770838_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ES_00053832	chr7	-	2250	13	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-34	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	40.4298947424908	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACCTGAATGTTGTCAAG	NA	False	NA	-8	True	AATAAA	-23	NA	140907531	140877098	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354_140904530_140907191
ES_00053833	chr7	-	2265	11	FSM	ENSMUSG00000058886.10	ENSMUST00000210830.2	2265	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	48.5753023665319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTTTGGACTTTT	NA	False	NA	-28	True	GATAAA	-16	NA	140907603	140890205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140894990_140895161_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
ES_00053835	chr7	-	2673	4	FSM	ENSMUSG00000019082.19	ENSMUST00000148100.8	791	4	-593	-1289	101	13	multi-exon	TRUE	canonical	3	130	junction_3	7.11805216802087	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTGGATGGGACGGTGG	5447	False	NA	-1	True	AATAAA	-36	NA	141012565	141009643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651
ES_00053838	chr7	-	3711	13	FSM	ENSMUSG00000025507.14	ENSMUST00000138065.8	3699	13	0	-12	0	0	multi-exon	FALSE	canonical	2	4	junction_12	21.9215773966098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023269	141018025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141018761_141018990_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021230_141021387_141021443_141021524_141021698_141022063
ES_00053841	chr7	-	485	3	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	-233	-1252	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	528	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	7767	False	NA	-13	True	AGTAAA	-37	NA	141055278	141053024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_141053318_141054940_141055056_141055201
ES_00053842	chr7	-	1334	5	FSM	ENSMUSG00000025139.15	ENSMUST00000211231.2	1334	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	141.704798789596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGGCTGGCTAATGAAC	2876	False	NA	NA	False	NA	NA	NA	141456045	141443712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_141444592_141445720_141445904_141446476_141446627_141452431_141452521_141456012
ES_00053854	chr7	+	635	1	Intergenic	novelGene_3566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1450	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTTTAAATAAAAGCTAGG	NA	False	NA	NA	False	NA	NA	NA	3050327	3050962	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3050300_3051000
ES_00053855	chr7	+	409	1	Intergenic	novelGene_3569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGATCTGATGCCCACT	2984	False	NA	NA	False	NA	NA	NA	3210076	3210485	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3210100_3210500
ES_00053856	chr7	+	203	1	Intergenic	novelGene_3572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCAAAAGTTTTCAATATG	NA	False	NA	NA	False	NA	NA	NA	3233862	3234065	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3233900_3234100
ES_00053857	chr7	+	205	1	Intergenic	novelGene_3573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCAAAAAAAAAAAATTTAA	NA	False	NA	NA	False	NA	NA	NA	3408183	3408388	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3408200_3408400
ES_00053858	chr7	+	204	1	Intergenic	novelGene_3575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTCTTTTTAAAATAT	NA	False	NA	NA	False	NA	NA	NA	3522060	3522264	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3522100_3522300
ES_00053859	chr7	+	499	1	Intergenic	novelGene_3576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGAGTAATCATCTTAT	NA	False	NA	NA	False	NA	NA	NA	4061671	4062170	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_4061700_4062200
ES_00053862	chr7	+	237	1	Intergenic	novelGene_3583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCAGGAGCCCTTGCC	NA	False	NA	NA	False	NA	NA	NA	5129743	5129980	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_5129700_5130000
ES_00053863	chr7	+	203	1	Intergenic	novelGene_3588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAGTTAAAAAAAAAAAAG	1825	False	NA	NA	False	NA	NA	NA	6978915	6979118	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_6978900_6979100
ES_00053864	chr7	+	203	1	Intergenic	novelGene_3591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGCTGCAGAAGCACCAG	NA	False	NA	NA	False	NA	NA	NA	9872458	9872661	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_9872500_9872700
ES_00053865	chr7	+	201	1	Intergenic	novelGene_3595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTGTTATGAGAGGTCT	NA	False	NA	NA	False	NA	NA	NA	11601159	11601360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_11601200_11601400
ES_00053866	chr7	+	232	1	Intergenic	novelGene_3597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACAACTTTTACCAGGAG	NA	False	NA	NA	False	NA	NA	NA	12456034	12456266	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_12456000_12456300
ES_00053868	chr7	+	352	1	Intergenic	novelGene_3609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATACGAACTATATTAAT	NA	False	NA	NA	False	NA	NA	NA	17020022	17020374	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_17020000_17020400
ES_00053869	chr7	+	545	1	Intergenic	novelGene_3612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACCAGTGGGTCAACCCA	5801	False	NA	NA	False	NA	NA	NA	17722031	17722576	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_17722000_17722600
ES_00053870	chr7	+	212	1	Intergenic	novelGene_3613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGAAGGATTCTCCAATA	NA	False	NA	NA	False	AATAAA	-7	NA	18188364	18188576	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_18188400_18188600
ES_00053871	chr7	+	3287	1	Intergenic	novelGene_3614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTACAGCTAGTGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	18431821	18435108	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_18431800_18435100
ES_00053872	chr7	+	455	1	Intergenic	novelGene_3617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCACGTGGTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	18436628	18437083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_18436600_18437100
ES_00053873	chr7	+	203	1	Intergenic	novelGene_3620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGAGGTGTGGCTCAGCA	1714	False	NA	NA	False	AAAAAG	-4	NA	19214293	19214496	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19214300_19214500
ES_00053874	chr7	+	208	1	Intergenic	novelGene_3621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGTTTTCCAAGACAG	NA	False	NA	NA	False	NA	NA	NA	19226876	19227084	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19226900_19227100
ES_00053875	chr7	+	324	1	Intergenic	novelGene_3622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACCAGTCTCTTAACTG	5504	False	NA	NA	False	NA	NA	NA	19338586	19338910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19338600_19338900
ES_00053876	chr7	+	242	1	Intergenic	novelGene_3634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATCTGAAGACATCTACA	NA	False	NA	NA	False	NA	NA	NA	24675449	24675691	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_24675400_24675700
ES_00053877	chr7	+	205	1	Intergenic	novelGene_3635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACTGTGTTTCTGCATT	NA	False	NA	NA	False	NA	NA	NA	25098692	25098897	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_25098700_25098900
ES_00053879	chr7	+	677	1	Intergenic	novelGene_3640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGGAAAAATCTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	26294881	26295558	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26294900_26295600
ES_00053880	chr7	+	1208	1	Intergenic	novelGene_3641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACCCAGCTCCTCACTG	NA	False	NA	NA	False	NA	NA	NA	26295834	26297042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26295800_26297000
ES_00053881	chr7	+	497	1	Intergenic	novelGene_3642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCGCACTGTCCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	26689040	26689537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26689000_26689500
ES_00053882	chr7	+	231	1	Intergenic	novelGene_3644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAGGGAGACAGTCATTC	1259	False	NA	NA	False	NA	NA	NA	26708547	26708778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26708500_26708800
ES_00053883	chr7	+	385	1	Intergenic	novelGene_3649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAACTCTTATAAAGGAC	3172	False	NA	NA	False	NA	NA	NA	27182917	27183302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27182900_27183300
ES_00053884	chr7	+	213	1	Intergenic	novelGene_3650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCAGGCTTAAAACCCCG	525	False	NA	NA	False	AATAAA	-16	NA	27195678	27195891	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27195700_27195900
ES_00053885	chr7	+	210	1	Intergenic	novelGene_3656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAATCTTATATTGTTG	1065	False	NA	NA	False	NA	NA	NA	27466788	27466998	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27466800_27467000
ES_00053886	chr7	+	253	1	Intergenic	novelGene_3658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACCATCACATTTATT	NA	False	NA	NA	False	NA	NA	NA	28038756	28039009	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28038800_28039000
ES_00053887	chr7	+	321	1	Intergenic	novelGene_3659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGACTTTTTAAAAGGCA	3068	False	NA	NA	False	NA	NA	NA	28074304	28074625	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28074300_28074600
ES_00053888	chr7	+	213	1	Intergenic	novelGene_3664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGCCAGTCTGAACTGCA	6851	False	NA	NA	False	NA	NA	NA	28323254	28323467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28323300_28323500
ES_00053890	chr7	+	420	1	Intergenic	novelGene_3668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCATGACTTTCTTTTTCA	4975	False	NA	NA	False	NA	NA	NA	28936691	28937111	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28936700_28937100
ES_00053891	chr7	+	729	1	Intergenic	novelGene_3672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACATAATGTAAAGTTACA	NA	False	NA	NA	False	NA	NA	NA	29345312	29346041	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29345300_29346000
ES_00053893	chr7	+	3950	1	Intergenic	novelGene_3678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGACAAACTCGATTTTT	NA	False	NA	24	True	AATAAA	-21	NA	29836229	29840179	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29836200_29840200
ES_00053895	chr7	+	222	1	Intergenic	novelGene_3685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAGGGAGGCTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	34040913	34041135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_34040900_34041100
ES_00053896	chr7	+	259	1	Intergenic	novelGene_3686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCAGGGCTACACAATG	NA	False	NA	NA	False	NA	NA	NA	34937595	34937854	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_34937600_34937900
ES_00053898	chr7	+	219	1	Intergenic	novelGene_3689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGTTGAGTTCTTAGTT	NA	False	NA	NA	False	NA	NA	NA	39195939	39196158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_39195900_39196200
ES_00053899	chr7	+	223	1	Intergenic	novelGene_3695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	984	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTATAGTTATGTAAACTG	NA	False	NA	NA	False	NA	NA	NA	42154132	42154355	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42154100_42154400
ES_00053900	chr7	+	335	1	Intergenic	novelGene_3699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACTAGGTCATTCGAAC	NA	False	NA	NA	False	NA	NA	NA	42865502	42865837	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42865500_42865800
ES_00053901	chr7	+	224	1	Intergenic	novelGene_3706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTGCTTTCTGGTCAT	7678	False	NA	NA	False	NA	NA	NA	43939353	43939577	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_43939400_43939600
ES_00053902	chr7	+	233	1	Intergenic	novelGene_3709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	396	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCATTGAAAGAAACTGA	3980	False	NA	NA	False	NA	NA	NA	44472090	44472323	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_44472100_44472300
ES_00053903	chr7	+	211	1	Intergenic	novelGene_3710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTTGCGTTTCTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	44648431	44648642	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_44648400_44648600
ES_00053905	chr7	+	231	1	Intergenic	novelGene_3718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTAATCTTTATGTGA	679	False	NA	NA	False	NA	NA	NA	45176827	45177058	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45176800_45177100
ES_00053906	chr7	+	227	1	Intergenic	novelGene_3719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGCACTTGGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	45204850	45205077	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45204800_45205100
ES_00053907	chr7	+	220	1	Intergenic	novelGene_3720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGATACTTTCAAATGA	NA	False	NA	NA	False	NA	NA	NA	46328146	46328366	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_46328100_46328400
ES_00053909	chr7	+	229	1	Intergenic	novelGene_3730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGCTCGACTTGACAA	NA	False	NA	NA	False	GATAAA	-31	NA	56826248	56826477	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_56826200_56826500
ES_00053910	chr7	+	417	1	Intergenic	novelGene_3732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCCTGCTTTATGCCACG	NA	False	NA	NA	False	NA	NA	NA	59033144	59033561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_59033100_59033600
ES_00053911	chr7	+	203	1	Intergenic	novelGene_3739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	73296197	73296400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_73296200_73296400
ES_00053912	chr7	+	1192	1	Intergenic	novelGene_3752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80494024	80495216	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_80494000_80495200
ES_00053913	chr7	+	200	1	Intergenic	novelGene_3753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAAACAAAACAGATAGA	5560	False	NA	NA	False	NA	NA	NA	80836388	80836588	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_80836400_80836600
ES_00053914	chr7	+	225	1	Intergenic	novelGene_3757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACGTAAGCAAGCAGTGGG	NA	False	NA	NA	False	NA	NA	NA	83811255	83811480	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_83811300_83811500
ES_00053915	chr7	+	589	1	Intergenic	novelGene_3761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTGCAAGCTTTCTAG	4447	False	NA	NA	False	NA	NA	NA	90064609	90065198	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_90064600_90065200
ES_00053916	chr7	+	204	1	Intergenic	novelGene_3764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	721	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAGCTTTTTTATGCAA	NA	False	NA	NA	False	NA	NA	NA	96390865	96391069	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_96390900_96391100
ES_00053917	chr7	+	202	1	Intergenic	novelGene_3766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTGTGGAATGGGAAAG	2980	False	NA	NA	False	NA	NA	NA	97248364	97248566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_97248400_97248600
ES_00053918	chr7	+	213	1	Intergenic	novelGene_3770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACCAACTCTTACAATT	NA	False	NA	NA	False	NA	NA	NA	99157269	99157482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_99157300_99157500
ES_00053920	chr7	+	214	1	Intergenic	novelGene_3773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATATACATATACATAT	NA	False	NA	NA	False	TTTAAA	-10	NA	100633168	100633382	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_100633200_100633400
ES_00053922	chr7	+	201	1	Intergenic	novelGene_3776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTATTATTCTATTTC	NA	False	NA	NA	False	NA	NA	NA	101528913	101529114	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_101528900_101529100
ES_00053923	chr7	+	205	1	Intergenic	novelGene_3780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	442	False	NA	NA	False	AAAAAG	-8	NA	102066196	102066401	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_102066200_102066400
ES_00053924	chr7	+	416	1	Intergenic	novelGene_3782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACCATCTTTGTTCTGG	1652	False	NA	NA	False	NA	NA	NA	103872601	103873017	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_103872600_103873000
ES_00053925	chr7	+	334	1	Intergenic	novelGene_3788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTACGTTTGAGTCAATA	NA	False	NA	NA	False	NA	NA	NA	105590579	105590913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_105590600_105590900
ES_00053926	chr7	+	206	1	Intergenic	novelGene_3809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGGCATTTTAAAATAGAA	NA	False	NA	NA	False	NA	NA	NA	115962281	115962487	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_115962300_115962500
ES_00053928	chr7	+	228	1	Intergenic	novelGene_3813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTCCTTTCACGGCACA	NA	False	NA	NA	False	NA	NA	NA	121714073	121714301	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_121714100_121714300
ES_00053929	chr7	+	257	1	Intergenic	novelGene_3814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATTGTAATTCTTACCA	4507	False	NA	NA	False	NA	NA	NA	122566727	122566984	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_122566700_122567000
ES_00053932	chr7	+	320	1	Intergenic	novelGene_3818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAAAAAATTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	125920959	125921279	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_125921000_125921300
ES_00053934	chr7	+	266	1	Intergenic	novelGene_3829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTACGGAATTTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	127269475	127269741	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_127269500_127269700
ES_00053935	chr7	+	201	1	Intergenic	novelGene_3830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTTCCCTCAGGAGGG	NA	False	NA	NA	False	NA	NA	NA	127362184	127362385	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_127362200_127362400
ES_00053946	chr7	+	245	2	Antisense	novelGene_ENSMUSG00000108105.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACCTCTGAAAGAGCAGC	885	False	NA	NA	False	NA	NA	NA	3304589	3334227	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_3304746_3334138
ES_00053947	chr7	+	2730	5	NNC	ENSMUSG00000078815.9	novel	1977	4	NA	NA	-588	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	9.80752262296652	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTGTGTTGGAGCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	3472122	3484183	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3473509_3478953_3479029_3480334_3480503_3481159_3481295_3483217
ES_00053948	chr7	+	364	4	FSM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	-13	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1435.61655357163	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTCCAATAAAAATGTGAA	255	False	NA	-13	True	NA	NA	NA	3620371	3623127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622951
ES_00053950	chr7	+	2773	18	NNC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	-18	-145	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_1	239.564555956402	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGAGGTTTTCTCTTCC	2710	False	NA	NA	False	NA	NA	NA	3648248	3663954	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_3648584_3653796_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ES_00053952	chr7	+	3639	17	NNC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_8	117.390224651587	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTCTGCTTGGCCTGT	109	False	NA	16	True	ATTAAA	-16	NA	4140064	4151172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146257_4146309_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
ES_00053955	chr7	+	3815	1	FSM	ENSMUSG00000074405.9	ENSMUST00000207193.2	3815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGACTAGGCTGGTTT	NA	False	NA	-84	True	NA	NA	NA	5032322	5036137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5032300_5036100
ES_00053956	chr7	+	472	4	FSM	ENSMUSG00000035228.16	ENSMUST00000208161.2	472	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATTGAGGACCTGGAGG	191	False	NA	NA	False	NA	NA	NA	5059854	5061084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_5059967_5060497_5060659_5060797_5060903_5060990
ES_00053957	chr7	+	2694	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	45.4569090294577	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1343	False	NA	21	True	AATAAA	-15	NA	5083268	5101177	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_5083638_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ES_00053958	chr7	+	918	8	NNC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-246	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	30.8353097362522	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGATTCAGTGCGTATTC	2966	False	NA	9	True	AATAAA	-24	NA	6263288	6284861	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_6263544_6266905_6266933_6269828_6269856_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ES_00053959	chr7	+	3606	6	NNC	ENSMUSG00000054893.16	novel	3498	5	NA	NA	-40	-6	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	18.2822318112423	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAGAGGTTCTTTTACA	2932	False	NA	NA	False	AATAAA	-31	NA	6289537	6310675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_6289654_6290868_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ES_00053960	chr7	+	1683	5	NIC	ENSMUSG00000055150.16	novel	1539	4	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	7.08431365765238	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTCCCCCATGGCAA	3028	False	NA	NA	False	NA	NA	NA	6366352	6382490	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_6366439_6374304_6374396_6376125_6376253_6378517_6378614_6381207
ES_00053961	chr7	+	2814	5	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	7.34846922834953	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATAGTGGAGCTG	3154	False	NA	30	True	AATAAA	-41	NA	6980244	6994086	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_6980472_6984231_6984357_6987994_6988152_6989101_6989202_6991881
ES_00053963	chr7	+	3566	9	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	121.410203442709	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568818	12584504	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_12569092_12569373_12569455_12569881_12569988_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ES_00053964	chr7	+	2087	2	FSM	ENSMUSG00000054715.12	ENSMUST00000119989.3	2087	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTCTGTTGTCTTATG	NA	False	NA	NA	False	NA	NA	NA	12631793	12642170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_12631871_12640160
ES_00053965	chr7	+	330	3	Intergenic	novelGene_3598	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATATAT	NA	False	NA	NA	False	NA	NA	NA	12648026	12653391	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_12648100_12651090_12651214_12653257
ES_00053966	chr7	+	308	1	FSM	ENSMUSG00000107687.2	ENSMUST00000204184.2	322	1	10	4	10	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGCCGATTTTGTTATGA	NA	False	NA	NA	False	NA	NA	NA	13214683	13214991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_13214700_13215000
ES_00053967	chr7	+	208	1	Intergenic	novelGene_3604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGCATAGTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	15594837	15595045	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_15594800_15595000
ES_00053968	chr7	+	476	3	FSM	ENSMUSG00000006024.14	ENSMUST00000132828.2	476	3	0	0	0	0	multi-exon	FALSE	canonical	3	1229	junction_2	60	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGGCTGGCACTGGCG	NA	False	NA	NA	False	AAAACA	-24	NA	15832562	15843234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15832700_15841477_15841558_15842975
ES_00053969	chr7	+	1804	13	FSM	ENSMUSG00000041420.19	ENSMUST00000176506.8	1839	13	32	3	32	0	multi-exon	FALSE	canonical	1	1	junction_5	5.65439848456246	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAATTCTCATTTGT	7571	False	NA	NA	False	AATAAA	-14	NA	15909231	15920426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919447_15919981
ES_00053970	chr7	+	1731	13	FSM	ENSMUSG00000041420.19	ENSMUST00000002495.18	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	4.17997873466148	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7694	False	NA	NA	False	AATAAA	-17	NA	15909354	15920429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912875_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
ES_00053971	chr7	+	1772	4	NNC	ENSMUSG00000002083.14	novel	1814	4	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	95.7160151466595	59	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16043485	16052130	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_16043690_16046050_16046340_16047551_16047743_16051042
ES_00053972	chr7	+	205	1	Intergenic	novelGene_3605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTCCTTGAATAGTTTT	NA	False	NA	NA	False	NA	NA	NA	16295089	16295294	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_16295100_16295300
ES_00053973	chr7	+	890	2	FSM	ENSMUSG00000001918.18	ENSMUST00000141349.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	1781	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCCTGTGAGTGCCAG	NA	False	NA	NA	False	ACTAAA	-31	NA	16527101	16529868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16527806_16529682
ES_00053974	chr7	+	914	4	FSM	ENSMUSG00000063594.6	ENSMUST00000078182.6	910	4	-4	0	-4	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCCTGCACTTTAGGGG	NA	False	NA	NA	False	AATAAA	-14	NA	16625706	16629350	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16626282_16626374_16626437_16628866_16628953_16629159
ES_00053975	chr7	+	463	1	FSM	ENSMUSG00000108348.3	ENSMUST00000206129.3	5067	1	1848	2756	1848	-2756	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGTTGCCATAGAGACC	4005	False	NA	NA	False	NA	NA	NA	16718858	16719321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16718900_16719300
ES_00053976	chr7	+	3605	1	FSM	ENSMUSG00000041117.9	ENSMUST00000094805.5	4809	1	1203	1	1203	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTGTTTCCGAGGTGG	5879	False	NA	19	True	AATAAA	-16	NA	16727835	16731440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_16727800_16731400
ES_00053977	chr7	+	611	1	FSM	ENSMUSG00000063830.6	ENSMUST00000081336.6	492	1	91	-210	91	210	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACACACATGGTATAAATC	NA	False	NA	NA	False	AATAAA	-22	NA	17526589	17527200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_17526600_17527200
ES_00053978	chr7	+	799	8	FSM	ENSMUSG00000023118.16	ENSMUST00000138440.2	799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	56.5569967161537	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGCTCCCACAGACAGG	NA	False	NA	NA	False	NA	NA	NA	18779618	18783988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_18779639_18779772_18779887_18780679_18780828_18781445_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862
ES_00053979	chr7	+	2593	20	NIC	ENSMUSG00000040811.16	novel	2765	22	NA	NA	-1807	0	intron_retention	FALSE	canonical	3	19	junction_1	40.167516264774	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18913287	18940407	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_18913575_18913675_18913781_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ES_00053980	chr7	+	3423	4	FSM	ENSMUSG00000030401.17	ENSMUST00000209186.2	3498	4	18	57	18	-57	multi-exon	FALSE	canonical	3	54	junction_3	3.74165738677394	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAATATTTTTTAAATGT	NA	False	NA	NA	False	NA	NA	NA	19016577	19023865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171
ES_00053981	chr7	+	421	3	FSM	ENSMUSG00000003549.10	ENSMUST00000176723.2	421	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	14	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTGGCTCTGCGTGTT	1993	False	NA	14	True	AATAAA	-19	NA	19088295	19090448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19088351_19089025_19089287_19090343
ES_00053982	chr7	+	3811	14	NNC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	252	-221	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	15.9344069686884	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGAGCCAGGGAGGCTA	970	False	NA	NA	False	NA	NA	NA	19093946	19112237	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_19094660_19094951_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ES_00053983	chr7	+	3130	13	FSM	ENSMUSG00000040734.15	ENSMUST00000047621.14	3130	13	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	11.000946928939	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	414	False	NA	NA	False	AATAAA	-15	NA	19095140	19112458	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ES_00053984	chr7	+	2432	22	NIC	ENSMUSG00000030400.18	novel	3578	23	NA	NA	17	-85	intron_retention	FALSE	canonical	3	111	junction_10	16.2438894843024	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTGGAGCAGCTGCAG	NA	False	NA	NA	False	NA	NA	NA	19115981	19128301	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
ES_00053985	chr7	+	667	6	FSM	ENSMUSG00000002043.18	ENSMUST00000108455.8	651	6	-16	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	201.035917188944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCTGTGCAGTGCTTAT	505	False	NA	17	True	AGTAAA	-18	NA	19242634	19250066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249886
ES_00053987	chr7	+	358	2	FSM	ENSMUSG00000087593.2	ENSMUST00000137373.2	402	2	44	0	44	0	multi-exon	FALSE	canonical	1	3	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAGGAATGACGTGGAC	NA	False	NA	NA	False	AATAAA	-28	NA	19550521	19552550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_19550699_19552369
ES_00053988	chr7	+	1297	3	FSM	ENSMUSG00000047603.10	ENSMUST00000205736.2	1297	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	23	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCCTTTTTGTTCATG	NA	False	NA	NA	False	NA	NA	NA	23833598	23836335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_23833913_23834682_23834741_23835410
ES_00053989	chr7	+	876	3	Intergenic	novelGene_3632	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_1	5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCAGAAACTCTGACTCT	NA	False	NA	NA	False	NA	NA	NA	23967125	23969325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_23967144_23968190_23968442_23968718
ES_00053990	chr7	+	2324	3	FSM	ENSMUSG00000055305.16	ENSMUST00000032696.7	2324	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTCTGATTTAATTATAA	NA	False	NA	NA	False	NA	NA	NA	23970992	23976252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_23971096_23972672_23972800_23974158
ES_00053991	chr7	+	1057	1	FSM	ENSMUSG00000108567.2	ENSMUST00000206811.2	439	1	252	-870	252	870	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAGCAAAACAAAACTTGT	NA	False	NA	NA	False	TTTAAA	-4	NA	24018057	24019114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24018100_24019100
ES_00053992	chr7	+	704	5	FSM	ENSMUSG00000046223.11	ENSMUST00000205877.2	872	5	-19	187	-8	-187	multi-exon	FALSE	canonical	3	18	junction_3	6.53834841531101	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGTCCGTTCAAACAGC	NA	False	NA	NA	False	NA	NA	NA	24161900	24172198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997
ES_00053994	chr7	+	1070	7	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5548	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	10.6249183003395	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	778	False	NA	NA	False	AATAAA	-25	NA	24471082	24484081	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_24471221_24472009_24472071_24473674_24473740_24474864_24474981_24477550_24477687_24480294_24480655_24483887
ES_00053996	chr7	+	1009	5	FSM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	109	339	109	-339	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGGCAGGAGTCATGG	3007	False	NA	NA	False	AATAAA	-15	NA	24596914	24601283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_24597014_24598519_24598814_24599011_24599131_24600657_24600727_24600855
ES_00053998	chr7	+	2387	6	FSM	ENSMUSG00000057229.12	ENSMUST00000085953.5	2387	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	50.2330568450697	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTGTGGCCTTTCCTC	1818	False	NA	36	True	NA	NA	NA	25318917	25324973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_25319890_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ES_00054002	chr7	+	699	1	ISM	ENSMUSG00000097017.2	ENSMUST00000181552.2	3902	2	1197	2105	1197	-2105	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCCTGGTCTTAGAGCT	NA	False	NA	NA	False	NA	NA	NA	25517275	25517974	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_25517300_25518000
ES_00054005	chr7	+	5802	6	NNC	ENSMUSG00000037640.16	novel	811	6	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	64.2588515303534	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTTGCTGAGTATTTT	NA	False	NA	NA	False	AATAAA	-11	NA	27430824	27453125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449574_27449654
ES_00054006	chr7	+	3802	5	NNC	ENSMUSG00000078779.5	novel	3437	5	NA	NA	0	336	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	73.2154355310409	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTGTTTATTTTGCAT	408	False	NA	-1	True	NA	NA	NA	27538031	27556199	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_27538164_27542259_27542313_27543709_27543837_27545828_27545928_27552808
ES_00054007	chr7	+	924	4	FSM	ENSMUSG00000047730.18	ENSMUST00000154481.8	1123	4	126	73	126	-72	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCCTCCCCCTTTGC	8489	False	NA	NA	False	NA	NA	NA	27813377	27820213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27813553_27816625_27817010_27819744_27820017_27820120
ES_00054008	chr7	+	815	3	FSM	ENSMUSG00000046865.8	ENSMUST00000208259.2	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	2495	junction_1	88.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTGGTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	27874418	27877126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_27874504_27875279_27875451_27876567
ES_00054009	chr7	+	672	2	FSM	ENSMUSG00000015165.17	ENSMUST00000174526.2	672	2	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTATTTGCTGGGGCT	NA	False	NA	11	True	AATAAA	-14	NA	28520637	28521669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28520913_28521272
ES_00054011	chr7	+	778	3	FSM	ENSMUSG00000054083.9	ENSMUST00000208299.2	2445	3	1667	0	1667	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGTAAATAGTAATTC	NA	False	NA	NA	False	AATAAA	-11	NA	28592043	28592988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28592161_28592247_28592307_28592386
ES_00054012	chr7	+	678	3	FSM	ENSMUSG00000109017.2	ENSMUST00000207099.2	698	3	-27	47	-27	-47	multi-exon	FALSE	canonical	0	0	junction_1	6	2293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGATGTTTTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	28728420	28729628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_28728527_28728944_28729078_28729189
ES_00054013	chr7	+	1110	1	FSM	ENSMUSG00000030584.15	ENSMUST00000207677.2	3181	1	1418	653	1418	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCATCTCTAACCTCTT	NA	False	NA	12	True	ATTAAA	-28	NA	29015905	29017015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29015900_29017000
ES_00054014	chr7	+	557	1	Intergenic	novelGene_3671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAACTGCAACAAACTGA	NA	False	NA	NA	False	NA	NA	NA	29225339	29225896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29225300_29225900
ES_00054016	chr7	+	222	2	Genic_Genomic	ENSMUSG00000049421.14	novel	1945	1	NA	NA	-52809	-1700	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTCTCTCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	29741392	29797826	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_29741565_29797776
ES_00054020	chr7	+	200	2	Antisense	novelGene_ENSMUSG00000109142.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	162	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAAATTCCAAGCCATG	NA	False	NA	NA	False	NA	NA	NA	29889134	29928185	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_29889187_29928037
ES_00054021	chr7	+	214	2	Intergenic	novelGene_3679	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	84	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTTGTTCCCCTAAG	NA	False	NA	NA	False	NA	NA	NA	29906037	29907823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_29906089_29907660
ES_00054022	chr7	+	653	1	FSM	ENSMUSG00000013928.14	ENSMUST00000208866.2	1340	1	682	5	682	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TATATATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29980662	29981315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_29980700_29981300
ES_00054023	chr7	+	787	4	FSM	ENSMUSG00000019737.15	ENSMUST00000176071.8	773	4	-14	0	0	0	multi-exon	FALSE	canonical	3	156	junction_2	25.4863798048204	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGGACCAGGACTTGGA	NA	False	NA	NA	False	NA	NA	NA	30014295	30016285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997
ES_00054025	chr7	+	2853	20	NNC	ENSMUSG00000006649.18	novel	752	9	NA	NA	5394	12	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	16.9669713367911	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	30164543	30186660	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_30164594_30164890_30165078_30165176_30165307_30165433_30165607_30166560_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ES_00054026	chr7	+	2871	19	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	5593	-16	5593	16	3prime_fragment	FALSE	canonical	2	33	junction_1	11.515555769973	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCCAAGCCAAAGGATGC	NA	False	NA	NA	False	NA	NA	NA	30164742	30186664	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ES_00054028	chr7	+	634	6	FSM	ENSMUSG00000005553.15	ENSMUST00000165410.2	738	6	104	0	104	0	multi-exon	FALSE	canonical	1	1	junction_4	1.09544511501033	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATCTCTCCATCCACTAT	183	False	NA	NA	False	NA	NA	NA	30421916	30424616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30422041_30422344_30422491_30423617_30423752_30424082_30424185_30424279_30424372_30424580
ES_00054031	chr7	+	421	7	FSM	ENSMUSG00000060962.13	ENSMUST00000041703.10	662	7	-10	251	-10	8	multi-exon	FALSE	canonical	1	1	junction_2	1.34370962471642	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCCTCTCTGATGCAGC	NA	False	NA	NA	False	NA	NA	NA	30475815	30480237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_30475924_30477032_30477081_30477186_30477235_30477625_30477695_30479102_30479130_30479257_30479306_30480164
ES_00054032	chr7	+	478	1	FSM	ENSMUSG00000078380.2	ENSMUST00000105172.2	456	1	9	-31	9	31	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTTTTCCCACCATAAA	7256	False	NA	NA	False	AATATA	-2	NA	33950471	33950949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_33950500_33950900
ES_00054033	chr7	+	305	1	FSM	ENSMUSG00000030494.14	ENSMUST00000187997.2	2646	1	2239	102	2239	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAATTTTTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	35084228	35084533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_35084200_35084500
ES_00054034	chr7	+	314	3	FSM	ENSMUSG00000023072.15	ENSMUST00000155137.8	401	3	87	0	-5	0	multi-exon	FALSE	canonical	3	146	junction_1	1	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAAAACGAGGGGCTGAA	NA	False	NA	NA	False	NA	NA	NA	35115839	35117693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_35115885_35117066_35117286_35117643
ES_00054035	chr7	+	5170	6	NNC	ENSMUSG00000108621.2	novel	208	2	NA	NA	300	4564	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	20.5075595817737	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTTCTTCTGTTTA	NA	False	NA	28	True	AATAAA	-31	NA	39202248	39219198	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_39202324_39202651_39202757_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ES_00054037	chr7	+	4097	9	NNC	ENSMUSG00000091474.3	novel	532	2	NA	NA	2101	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	94.6807134531632	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	45	True	AATAAA	-27	NA	41250848	41277957	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_41250970_41251171_41251240_41252859_41252959_41261099_41261320_41261794_41261922_41262579_41262676_41274146_41274257_41274676_41277106_41277130
ES_00054039	chr7	+	208	1	NIC	ENSMUSG00000091528.10	novel	2598	7	NA	NA	4496	-24605	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTCCCTTTCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	42672717	42672925	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_42672700_42672900
ES_00054040	chr7	+	3325	2	Intergenic	novelGene_3698	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTTTCATTAATAATTT	NA	False	NA	NA	False	NA	NA	NA	42802580	42806828	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42802835_42803757
ES_00054041	chr7	+	578	5	FSM	ENSMUSG00000064194.11	ENSMUST00000200973.4	578	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	196.935268552893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGCTATCTTCGAA	NA	False	NA	NA	False	NA	NA	NA	42827046	42838926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838575_42838725
ES_00054042	chr7	+	3521	4	NIC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	0	-131	intron_retention	FALSE	canonical	3	51	junction_1	89.8158610095616	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTCTCCGAAAACATGAA	9998	False	NA	NA	False	NA	NA	NA	42863462	42875626	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_42863572_42870265_42873126_42873324_42873386_42875135
ES_00054043	chr7	+	694	3	FSM	ENSMUSG00000004612.10	ENSMUST00000206741.2	686	3	-10	2	-10	-2	multi-exon	FALSE	canonical	0	0	junction_2	0.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATCTTATTGTTCCAAG	8484	False	NA	NA	False	AATAAA	-11	NA	43086543	43087668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43086885_43086960_43087108_43087462
ES_00054044	chr7	+	409	2	FSM	ENSMUSG00000004610.5	ENSMUST00000143096.2	409	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACTGCCTCTTTCCTCA	NA	False	NA	32	True	AATAAA	-15	NA	43105924	43107204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43106062_43106932
ES_00054045	chr7	+	3836	10	FSM	ENSMUSG00000070604.6	ENSMUST00000107977.4	3836	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	4.06733449282736	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTAGTGCCTGCAAAGG	NA	False	NA	NA	False	NA	NA	NA	43112574	43121443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43112697_43112783_43113600_43114229_43114524_43114644_43114930_43115789_43116045_43116850_43117130_43117377_43117675_43118079_43118194_43118383_43118539_43120224
ES_00054046	chr7	+	366	1	FSM	ENSMUSG00000108438.2	ENSMUST00000205508.2	553	1	-41	228	-41	-228	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTATCTCATATTAGTG	NA	False	NA	NA	False	NA	NA	NA	43156333	43156699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43156300_43156700
ES_00054048	chr7	+	1312	6	FSM	ENSMUSG00000067616.12	ENSMUST00000080211.12	1312	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	3.00665927567458	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGTTGAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	43424027	43428687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_43424226_43425903_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
ES_00054049	chr7	+	204	1	Genic_Genomic	ENSMUSG00000108509.2	novel	NA	NA	NA	NA	672	151	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCACCACAGTTAATACC	3	False	NA	NA	False	NA	NA	NA	44012659	44012863	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_44012700_44012900
ES_00054052	chr7	+	2414	2	FSM	ENSMUSG00000109511.2	ENSMUST00000207103.2	2414	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACTTGCTGTGAGT	370	False	NA	13	True	AATAAA	-13	NA	44465806	44480228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44465903_44477910
ES_00054053	chr7	+	2288	9	FSM	ENSMUSG00000074141.14	ENSMUST00000118125.9	2275	9	-13	0	-4	0	multi-exon	FALSE	canonical	0	0	junction_6	4.24079886342184	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTCACTTCCCTCC	370	False	NA	5	True	AATAAA	-16	NA	44465806	44490228	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44465908_44481539_44481606_44483374_44483517_44486054_44486291_44486799_44486913_44487412_44487615_44488574_44488644_44488747_44488885_44489006
ES_00054056	chr7	+	1993	17	NIC	ENSMUSG00000002963.18	novel	1770	17	NA	NA	4	-65	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	58.1882384485903	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCCTGATGAGCCTGCTT	9319	False	NA	25	True	AAGAAA	-18	NA	44506566	44512351	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_44506677_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ES_00054057	chr7	+	1725	8	FSM	ENSMUSG00000003184.16	ENSMUST00000209066.2	1712	8	-13	0	5	0	multi-exon	FALSE	canonical	3	15	junction_1	52.6571506084794	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGCTGTCGACTGCGT	NA	False	NA	4	True	AATAAA	-19	NA	44647076	44651813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ES_00054059	chr7	+	1935	10	NNC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	0	7437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	166.224079015179	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTACAATGTACTTAGATA	3058	False	NA	NA	False	NA	NA	NA	44711852	44735071	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735_44727591_44734933
ES_00054062	chr7	+	1948	11	FSM	ENSMUSG00000030796.18	ENSMUST00000097216.5	1948	11	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	103.303436535287	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	6888	False	NA	NA	False	AATAAA	-29	NA	44866634	44883059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44866770_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ES_00054063	chr7	+	221	3	Intergenic	novelGene_3711	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTCATTTTAATTCCA	316	False	NA	NA	False	NA	NA	NA	44896472	44900200	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_44896517_44896542_44896553_44900033
ES_00054064	chr7	+	2007	10	FSM	ENSMUSG00000094152.6	ENSMUST00000179310.4	2007	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.83310749400969	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCTGTGAGCTGGGGGA	NA	False	NA	NA	False	NA	NA	NA	44908454	44922113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_44908903_44909283_44909442_44909624_44909752_44909899_44910076_44910240_44910352_44910496_44910739_44917438_44917623_44917871_44918074_44918196_44918357_44921914
ES_00054065	chr7	+	336	2	Intergenic	novelGene_3713	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	45053540	45061734	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_45053788_45061645
ES_00054066	chr7	+	1120	1	FSM	ENSMUSG00000110350.2	ENSMUST00000209541.2	832	1	-651	363	-651	-363	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGACGGAAAAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	45108241	45109361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45108200_45109400
ES_00054067	chr7	+	300	2	Antisense	novelGene_ENSMUSG00000011382.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1091	junction_1	0	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACCCTGTCTTGAAA	NA	False	NA	NA	False	NA	NA	NA	45119515	45122928	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_45119570_45122682
ES_00054068	chr7	+	251	2	Antisense	novelGene_ENSMUSG00000011382.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	43	junction_1	0	65	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAAAAATAAAGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	45122630	45130215	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_+_45122683_45130016
ES_00054069	chr7	+	2153	11	FSM	ENSMUSG00000023467.19	ENSMUST00000210813.2	2153	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.6846648925868	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAAAAGGCTTTATTTC	6641	False	NA	NA	False	AATAAA	-27	NA	45135685	45172351	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45135908_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45171863
ES_00054070	chr7	+	1646	11	FSM	ENSMUSG00000023467.19	ENSMUST00000210868.2	1664	11	18	0	18	0	multi-exon	FALSE	canonical	1	1	junction_1	28.1701970174154	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAAAGGCAGT	131	False	NA	NA	False	AATAAA	-10	NA	45164078	45173056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45164131_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168310_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45172884
ES_00054072	chr7	+	1382	6	FSM	ENSMUSG00000030826.20	ENSMUST00000209569.2	1905	6	0	523	0	-523	multi-exon	TRUE	canonical	3	349	junction_4	36.7009536660834	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACATTTCCCCTGTGGCT	2452	False	NA	NA	False	NA	NA	NA	45219773	45235659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837
ES_00054073	chr7	+	3202	12	FSM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	31.446399365553	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTGTCAAGATTTGGG	NA	False	NA	6	True	AATAAA	-19	NA	45276911	45288517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_45277015_45277189_45277331_45277837_45278506_45279563_45279920_45281659_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
ES_00054074	chr7	+	1438	4	NNC	ENSMUSG00000042918.18	novel	536	2	NA	NA	-548	-11	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	1.4142135623731	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATCTCGCGTGTGGCC	NA	False	NA	NA	False	ATTAAA	-2	NA	45293259	45295154	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_45293393_45293627_45293853_45293942_45293998_45294129
ES_00054075	chr7	+	2499	9	NNC	ENSMUSG00000002781.20	novel	2297	8	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	26.6713212083691	228	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5409	False	NA	7	True	AATAAA	-14	NA	45546281	45566837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_45546526_45546858_45547091_45549055_45549161_45553907_45554027_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ES_00054077	chr7	+	2628	2	NNC	ENSMUSG00000040189.19	novel	1078	5	NA	NA	-6	2999	intron_retention	FALSE	canonical	3	12	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTCATGGTGTCTCT	3154	False	NA	NA	False	NA	NA	NA	45573660	45577490	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_45574014_45575215
ES_00054079	chr7	+	1457	5	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-11	-178	intron_retention	FALSE	canonical	3	230	junction_1	21.9928965804871	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGCCAGCTTTGAAGCAC	9907	False	NA	NA	False	NA	NA	NA	49408889	49423545	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ES_00054080	chr7	+	2597	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	15.4008928312614	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	633	False	NA	1	True	ATTAAA	-18	NA	51511790	51644201	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_51512394_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ES_00054081	chr7	+	264	1	FSM	ENSMUSG00000074092.6	ENSMUST00000117187.2	264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGGGGCTAGGCACCCA	NA	False	NA	NA	False	NA	NA	NA	52405212	52405476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_52405200_52405500
ES_00054082	chr7	+	3726	21	FSM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	6	3	3	-3	multi-exon	FALSE	canonical	3	52	junction_19	13.6799122804205	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACAGGAACATCTCCAG	NA	False	NA	NA	False	AATAAA	-14	NA	55443918	55476844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980
ES_00054084	chr7	+	4183	32	FSM	ENSMUSG00000030447.16	ENSMUST00000163845.4	4178	32	-5	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	151.121606179654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAACAA	NA	False	NA	-22	True	NA	NA	NA	55491997	55580219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_55492056_55503749_55503803_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ES_00054085	chr7	+	206	1	Intergenic	novelGene_3728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGAATTCTTAATGTTC	NA	False	NA	NA	False	NA	NA	NA	55747697	55747903	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_55747700_55747900
ES_00054086	chr7	+	206	1	Intergenic	novelGene_3729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATATTTTTGTTATTA	7187	False	NA	NA	False	NA	NA	NA	55775447	55775653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_55775400_55775700
ES_00054087	chr7	+	4339	9	FSM	ENSMUSG00000033676.14	ENSMUST00000196198.5	4348	9	9	0	9	0	multi-exon	FALSE	canonical	1	4	junction_1	10.0739453542294	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATAGTACTGTCTTTCCA	NA	False	NA	NA	False	AATAAA	-13	NA	57240274	57477382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_57240397_57241228_57241321_57241518_57241587_57415171_57415393_57438613_57438697_57442239_57442378_57461801_57461955_57466022_57466268_57474165
ES_00054088	chr7	+	3608	13	NNC	ENSMUSG00000025324.9	novel	5419	21	NA	NA	136239	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	4.75146176338281	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGTGTCTGGTGCCACT	NA	False	NA	NA	False	AATAAA	-18	NA	58444232	58479170	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_58444413_58447047_58447649_58453211_58453316_58453416_58453544_58457122_58457308_58463273_58463603_58465904_58465982_58469357_58469484_58474047_58474249_58476820_58476902_58476993_58477099_58477522_58477711_58477866
ES_00054090	chr7	+	282	1	FSM	ENSMUSG00000093751.2	ENSMUST00000176164.2	632	1	133	217	133	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGACAAGCAGCCCTACG	NA	False	NA	NA	False	AAGAAA	-30	NA	63255899	63256181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_63255900_63256200
ES_00054092	chr7	+	1820	11	ISM	ENSMUSG00000030515.10	ENSMUST00000126941.2	2709	13	12	7350	12	-7350	5prime_fragment	FALSE	canonical	3	56	junction_9	8.96437393240599	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTACATACTATTGGATGA	NA	False	NA	NA	False	AATATA	-22	NA	65294657	65326212	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711
ES_00054093	chr7	+	683	1	FSM	ENSMUSG00000030515.10	ENSMUST00000206323.2	2711	1	414	1614	414	-1614	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCACCAGCCCGATTCT	NA	False	NA	NA	False	NA	NA	NA	65309193	65309876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65309200_65309900
ES_00054095	chr7	+	459	6	FSM	ENSMUSG00000030512.14	ENSMUST00000206409.2	459	6	0	0	0	0	multi-exon	FALSE	canonical	1	45	junction_1	1469.79105998098	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCCTGAGCTCTGCCAG	NA	False	NA	NA	False	NA	NA	NA	65710350	65724118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_65710441_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
ES_00054096	chr7	+	8332	29	NIC	ENSMUSG00000066406.17	novel	12543	37	NA	NA	233	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	4.8575367487345	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCGTGATGTATTTG	NA	False	NA	3	True	AATAAA	-18	NA	75264668	75404357	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_75264797_75313159_75313236_75316259_75316397_75326853_75327228_75334864_75335058_75336960_75337070_75345371_75345415_75347049_75347183_75354112_75354288_75367517_75367586_75369876_75369944_75373532_75373669_75375047_75375161_75375715_75375869_75376717_75376969_75378543_75378670_75378781_75378900_75380110_75380360_75385460_75385538_75386033_75386216_75386355_75386439_75389113_75389309_75392383_75392546_75393213_75393285_75393712_75393758_75396507_75396559_75397325_75397776_75398927_75399259_75400321
ES_00054097	chr7	+	2215	1	FSM	ENSMUSG00000052629.6	ENSMUST00000064591.5	2205	1	-284	274	-284	-274	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGACCTCATCAGAGACT	NA	False	NA	NA	False	NA	NA	NA	78228293	78230508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78228300_78230500
ES_00054098	chr7	+	2873	4	FSM	ENSMUSG00000030611.11	ENSMUST00000123706.8	924	4	-196	-1753	-2	0	multi-exon	FALSE	canonical	3	70	junction_2	181.085615110643	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78432864	78442737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384
ES_00054099	chr7	+	441	2	FSM	ENSMUSG00000030609.19	ENSMUST00000206661.2	441	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGACCTGGCCTTGAAC	NA	False	NA	NA	False	NA	NA	NA	78552108	78555750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_78552390_78555590
ES_00054100	chr7	+	280	1	FSM	ENSMUSG00000108599.2	ENSMUST00000205285.2	2127	1	54	1793	54	-1793	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAAAGGCTAAGCCTCGAT	NA	False	NA	NA	False	NA	NA	NA	79116210	79116490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79116200_79116500
ES_00054101	chr7	+	1977	6	ISM	ENSMUSG00000046591.11	ENSMUST00000206591.2	3655	20	-39	18361	12	-141	5prime_fragment	FALSE	canonical	3	244	junction_2	18.3847763108502	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGAGACCCACCTGTCT	1936	False	NA	NA	False	NA	NA	NA	79309955	79325320	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019
ES_00054102	chr7	+	2006	7	NIC	ENSMUSG00000046591.11	novel	3655	20	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	91.3699744020005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	1947	False	NA	NA	False	AATAAA	-17	NA	79309966	79325461	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79325257
ES_00054103	chr7	+	517	2	FSM	ENSMUSG00000046591.11	ENSMUST00000206677.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	NA	False	NA	NA	False	AATAAA	-17	NA	79320668	79325461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79320744_79325019
ES_00054105	chr7	+	1423	1	FSM	ENSMUSG00000108389.2	ENSMUST00000206885.2	2285	1	469	393	469	-393	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATGATTTTGAGACTAG	389	False	NA	NA	False	NA	NA	NA	79859610	79861033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79859600_79861000
ES_00054106	chr7	+	2392	13	FSM	ENSMUSG00000045467.14	ENSMUST00000107381.8	2392	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	5.59016994374947	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	5199	False	NA	NA	False	AGTAAA	-20	NA	79896302	79908943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79896412_79897031_79897300_79898042_79898084_79899867_79899987_79902248_79902380_79902788_79902946_79903326_79903471_79903829_79903916_79904218_79904451_79905059_79905245_79906592_79906779_79907924_79908106_79908390
ES_00054107	chr7	+	1821	7	FSM	ENSMUSG00000038943.17	ENSMUST00000174051.8	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	413.618852998211	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTGTTTTGTCTTCAAT	NA	False	NA	16	True	AATAAA	-26	NA	79959144	79966005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963277_79963317_79964861
ES_00054109	chr7	+	2184	5	ISM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	41258	-16	4027	16	3prime_fragment	FALSE	canonical	3	13	junction_4	5.78791845139511	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTGATTAAGAAAGGCCA	NA	False	NA	38	True	NA	NA	NA	80748605	80755376	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
ES_00054110	chr7	+	2026	10	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	23242	0	23242	0	3prime_fragment	FALSE	canonical	3	9	junction_1	35.0706517943986	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	6251	False	NA	11	True	AATAAA	-20	NA	80787839	80820164	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_80787991_80791711_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ES_00054111	chr7	+	1839	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	27027	3	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGTACAGTGTGTAT	NA	False	NA	14	True	AATAAA	-23	NA	80791624	80820167	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ES_00054112	chr7	+	717	4	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	13	1	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	41.2148840428633	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTTGGGTATTATGT	NA	False	NA	9	True	AATAAA	-14	NA	81173378	81181247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_81173472_81178534_81178689_81179094_81179276_81180958
ES_00054113	chr7	+	1066	10	FSM	ENSMUSG00000038623.10	ENSMUST00000119543.2	1066	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.07565471755214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTCTCTCTGACCTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	81512434	81533167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_81512467_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
ES_00054115	chr7	+	400	1	FSM	ENSMUSG00000108984.2	ENSMUST00000208664.2	2194	1	-244	2038	-244	-2038	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82364555	82364955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_82364600_82365000
ES_00054116	chr7	+	2983	3	NNC	ENSMUSG00000057706.8	novel	3355	2	NA	NA	-970	56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTATGGTGACTT	NA	False	NA	NA	False	AATAAA	-15	NA	82515570	82520779	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_82515652_82517049_82517136_82517963
ES_00054117	chr7	+	3306	22	FSM	ENSMUSG00000038540.15	ENSMUST00000164944.2	3306	22	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_20	2.27377835929778	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTTCAAATGTTCCATGT	NA	False	NA	NA	False	NA	NA	NA	83234299	83272155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_83234389_83235493_83235641_83239847_83239924_83245268_83245351_83246654_83246762_83247407_83247507_83247607_83247751_83249155_83249304_83250093_83250138_83252535_83252684_83253938_83254049_83256941_83257021_83258283_83258533_83259051_83259181_83259919_83259988_83261641_83261771_83264120_83264232_83265065_83265192_83265940_83266020_83267336_83267380_83269106_83269363_83271311
ES_00054118	chr7	+	1926	2	Genic_Genomic	ENSMUSG00000063902.14	novel	1378	1	NA	NA	0	41043	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCACAGAAACACTTGAAAA	NA	False	NA	NA	False	AAAACA	-32	NA	83405111	83447532	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_83407015_83447509
ES_00054119	chr7	+	1832	4	NNC	ENSMUSG00000038503.16	novel	489	4	NA	NA	-68	1096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	621.56951877217	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83541469	83548384	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_83541684_83544737_83544971_83546957_83547623_83547664
ES_00054120	chr7	+	3427	20	FSM	ENSMUSG00000039361.12	ENSMUST00000208730.2	3427	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	49.8793002992018	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTTACGGTGTTCT	NA	False	NA	13	True	AATAAA	-14	NA	89779500	89858134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89843480_89843505_89844862_89844923_89846123_89846229_89856790
ES_00054121	chr7	+	801	1	FSM	ENSMUSG00000039361.12	ENSMUST00000207596.2	1858	1	904	153	-477	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGACTCCCGGACA	NA	False	NA	NA	False	AGTAAA	-7	NA	89780375	89781176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_89780400_89781200
ES_00054122	chr7	+	2566	14	FSM	ENSMUSG00000039361.12	ENSMUST00000208089.3	2743	14	0	177	0	0	multi-exon	FALSE	canonical	2	3	junction_12	58.8915360451014	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTTACGGTGTTCT	NA	False	NA	13	True	AATAAA	-14	NA	89821457	89858134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89855367_89855470_89856790
ES_00054123	chr7	+	932	1	FSM	ENSMUSG00000109320.2	ENSMUST00000207202.2	2908	1	293	1683	293	-1683	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGAGAGTTCTTTCTTG	5941	False	NA	NA	False	AATAAA	-15	NA	91168615	91169547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_91168600_91169500
ES_00054124	chr7	+	633	4	FSM	ENSMUSG00000098066.3	ENSMUST00000182265.3	633	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.68178700572909	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAATTCACAATTTTTCA	NA	False	NA	NA	False	TATAAA	-22	NA	92288946	92296650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_92289144_92294751_92294848_92296000_92296162_92296471
ES_00054125	chr7	+	2023	1	FSM	ENSMUSG00000061119.8	ENSMUST00000208686.2	2093	1	-111	181	-111	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGCTGCCCTGAATAGAA	NA	False	NA	NA	False	NA	NA	NA	92523566	92525589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_92523600_92525600
ES_00054126	chr7	+	687	4	FSM	ENSMUSG00000061119.8	ENSMUST00000207992.2	687	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	46.0506967012082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTAATGTCTTCTATCT	NA	False	NA	NA	False	AATAAA	-24	NA	92524502	92555794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92555556
ES_00054127	chr7	+	13293	31	NIC	ENSMUSG00000048078.17	novel	704	5	NA	NA	-38	1	intron_retention	TRUE	canonical	0	0	junction_5	6.49350102452872	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCAGTGGCCTTTGTTG	NA	False	NA	18	True	AATAAA	-21	NA	95859314	96560301	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_95859617_96004562_96004619_96085966_96086066_96199218_96199507_96202684_96202955_96343976_96344233_96351848_96351948_96353132_96353369_96378555_96378733_96384891_96385107_96386557_96386769_96421210_96421313_96423181_96423377_96427025_96427227_96446526_96446713_96461039_96461187_96472936_96473154_96486482_96486603_96492132_96492395_96494903_96495172_96497202_96497347_96501539_96501790_96512656_96512890_96517156_96517312_96522860_96523739_96534523_96534697_96537880_96538117_96542065_96542363_96543859_96545475_96552051_96552195_96555039
ES_00054129	chr7	+	1190	1	FSM	ENSMUSG00000076143.3	ENSMUST00000102189.3	109	1	95	-1176	95	1176	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCACTGTGCTACACAGC	NA	False	NA	NA	False	NA	NA	NA	95898725	95899915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_95898700_95899900
ES_00054131	chr7	+	1420	6	NNC	ENSMUSG00000018995.13	novel	1777	12	NA	NA	41	-13345	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	47.2381201996862	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCTGTAATTGAGGTGG	7440	False	NA	NA	False	TTTAAA	-3	NA	96600809	96638677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96638052
ES_00054132	chr7	+	623	4	FSM	ENSMUSG00000018995.13	ENSMUST00000150681.3	623	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	53.19983291536	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCAGCTAGTGGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	96689210	96712179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_96689244_96706654_96706753_96708992_96709081_96711775
ES_00054133	chr7	+	2947	2	FSM	ENSMUSG00000044952.6	ENSMUST00000054107.6	2966	2	19	0	19	0	multi-exon	FALSE	canonical	2	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTGTCTGCTTCCA	NA	False	NA	NA	False	GATAAA	-7	NA	96981552	96999420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_96981579_96996499
ES_00054134	chr7	+	522	3	FSM	ENSMUSG00000030753.16	ENSMUST00000146473.2	670	3	148	0	148	0	multi-exon	FALSE	canonical	3	187	junction_2	5.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAGGAAGCGCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	98359231	98364464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_98359441_98362065_98362103_98364188
ES_00054136	chr7	+	2530	4	FSM	ENSMUSG00000055407.15	ENSMUST00000208924.2	2906	4	376	0	2	0	multi-exon	FALSE	canonical	0	0	junction_3	32.8768746825012	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	False	NA	13	True	AATAAA	-19	NA	98917554	98986344	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_98918521_98964895_98965110_98966678_98966876_98985191
ES_00054137	chr7	+	3715	15	FSM	ENSMUSG00000018909.16	ENSMUST00000032995.15	3715	15	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	5.50139128970563	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATCCTTTGATGATAG	NA	False	NA	NA	False	NA	NA	NA	99184868	99252781	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_99185006_99231467_99231499_99232866_99232928_99236421_99236467_99237204_99237402_99238101_99238162_99238857_99238926_99240469_99240606_99241710_99241796_99242196_99242270_99243827_99243966_99245229_99245314_99247697_99247769_99249007_99249060_99250304
ES_00054138	chr7	+	399	1	FSM	ENSMUSG00000109560.2	ENSMUST00000208573.2	613	1	123	91	123	-91	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCAGCGTGGCCGAGCA	889	False	NA	NA	False	NA	NA	NA	100173345	100173744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100173300_100173700
ES_00054140	chr7	+	1155	9	FSM	ENSMUSG00000030691.16	ENSMUST00000137196.8	1155	9	-1	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_8	8.89434511361011	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTATTTATTTTATTTA	NA	False	NA	NA	False	AATAAA	-23	NA	100757981	100853133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100852927
ES_00054142	chr7	+	216	1	FSM	ENSMUSG00000110360.2	ENSMUST00000210465.2	315	1	-7	106	-7	-106	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGTCTGAGCCAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	101439735	101439951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101439700_101440000
ES_00054143	chr7	+	1627	3	FSM	ENSMUSG00000007946.12	ENSMUST00000008090.11	1609	3	-18	0	-18	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCGACCACCTTTCTGA	6566	False	NA	NA	False	AATAAA	-21	NA	101467501	101471933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101467922_101469987_101470176_101470914
ES_00054144	chr7	+	658	5	FSM	ENSMUSG00000030649.19	ENSMUST00000106973.8	650	5	-8	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	224.489420686143	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCAGGTGTGGTCCCT	7817	False	NA	-39	True	NA	NA	NA	101545614	101548687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101545658_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ES_00054145	chr7	+	852	6	NNC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	-143	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	204.430330430687	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	8129	False	NA	19	True	AATAAA	-19	NA	101545926	101548745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_101546021_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ES_00054146	chr7	+	783	6	NNC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	208.612559545201	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	8431	False	NA	19	True	AATAAA	-19	NA	101546228	101548745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_101546254_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ES_00054147	chr7	+	7160	25	NIC	ENSMUSG00000066306.14	novel	3450	14	NA	NA	37	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	84.2736943272072	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGCTAAGCTCTTTGG	NA	False	NA	28	True	AATAAA	-16	NA	101619423	101664162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_101619562_101626586_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
ES_00054148	chr7	+	3135	10	FSM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	-4	0	-4	0	multi-exon	FALSE	canonical	2	5	junction_1	31.0606734006004	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714713	101732969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ES_00054149	chr7	+	3017	10	ISM	ENSMUSG00000070425.14	ENSMUST00000123372.8	4847	22	-120	13102	-120	-12564	5prime_fragment	FALSE	canonical	2	6	junction_1	30.7643372177013	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714799	101732969	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_101715012_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ES_00054152	chr7	+	2141	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859568	101887774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ES_00054153	chr7	+	3504	13	NNC	ENSMUSG00000030987.6	novel	619	5	NA	NA	-519	-3	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	14.8847423745107	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGGCTGTGACTCTT	NA	False	NA	20	True	AATAAA	-20	NA	101916493	102086522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_101916571_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
ES_00054154	chr7	+	221	2	Genic_Genomic	ENSMUSG00000030978.11	novel	5475	1	NA	NA	616	18976	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCACTCTTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	102091865	102137954	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_102091891_102137758
ES_00054155	chr7	+	5108	1	FSM	ENSMUSG00000030978.11	ENSMUST00000210751.2	5475	1	650	-283	650	283	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGATGGAGGATCTCTAC	NA	False	NA	NA	False	AAAACA	-44	NA	102091899	102097007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_102091900_102097000
ES_00054157	chr7	+	1053	1	FSM	ENSMUSG00000086229.4	ENSMUST00000122230.2	1053	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTCTTATTAAATGTTG	4731	False	NA	NA	False	NA	NA	NA	104470410	104471463	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_104470400_104471500
ES_00054160	chr7	+	1572	4	FSM	ENSMUSG00000051041.9	ENSMUST00000239087.2	699	4	-321	-552	-1	0	multi-exon	FALSE	canonical	2	7	junction_1	2.35702260395516	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTAAGTATCTT	NA	False	NA	NA	False	AATACA	-24	NA	107166651	107190301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_107167102_107170243_107170533_107189354_107189550_107189663
ES_00054161	chr7	+	286	1	ISM	ENSMUSG00000058244.5	ENSMUST00000209296.3	3228	2	4259	9	2766	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGAACGGTTTCCGTG	NA	False	NA	NA	False	NA	NA	NA	108214252	108214538	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_108214300_108214500
ES_00054162	chr7	+	1288	9	NNC	ENSMUSG00000031029.7	novel	2514	8	NA	NA	0	43213	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	796.826822073027	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCTAGACTCAGGGAAGC	NA	False	NA	NA	False	NA	NA	NA	108533623	108585371	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667_108540898_108585336
ES_00054163	chr7	+	2989	16	NNC	ENSMUSG00000061079.15	novel	2631	16	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_5	71.9541211853467	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTGTTTCATTAA	NA	False	NA	21	True	AATACA	-19	NA	109660932	109694603	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673278_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ES_00054164	chr7	+	6051	15	FSM	ENSMUSG00000005686.18	ENSMUST00000213373.2	3337	15	-2224	-490	-1519	4	multi-exon	FALSE	canonical	3	8	junction_1	15.4927567012485	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTTATTTCTGAGAT	NA	False	NA	NA	False	AATAAA	-32	NA	110365893	110411616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_110368140_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
ES_00054166	chr7	+	966	6	FSM	ENSMUSG00000030759.17	ENSMUST00000123845.8	1218	6	-213	465	-186	0	multi-exon	FALSE	canonical	3	399	junction_2	17.7538728169377	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGCATTGGCAGAGTATG	NA	False	NA	NA	False	NA	NA	NA	113112854	113149247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172
ES_00054168	chr7	+	2325	13	FSM	ENSMUSG00000048782.16	ENSMUST00000169913.8	2321	13	-6	2	-6	-2	multi-exon	FALSE	canonical	0	0	junction_2	1.01036297108185	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATTTTTTATTTTCTG	NA	False	NA	NA	False	AATAAA	-17	NA	114344994	114449613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_114345242_114368166_114368268_114390186_114390533_114391480_114391534_114393204_114393329_114403713_114403828_114410837_114410964_114428268_114428441_114433987_114434167_114441357_114441425_114444251_114444408_114445686_114445764_114449050
ES_00054169	chr7	+	675	1	Intergenic	novelGene_3808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAAACCATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	115909302	115909977	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_115909300_115910000
ES_00054170	chr7	+	1882	13	FSM	ENSMUSG00000030659.15	ENSMUST00000183175.8	1913	13	0	31	0	-31	multi-exon	FALSE	canonical	3	41	junction_2	11.5854314646552	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGCAAGCATACTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	116103649	116139647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179
ES_00054171	chr7	+	216	2	Genic_Genomic	ENSMUSG00000108456.2	novel	2500	1	NA	NA	7	35550	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCAGTGTTTTAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	116146106	116184149	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_116146135_116183961
ES_00054172	chr7	+	200	2	Intergenic	novelGene_3810	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCAGTGTTTTAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	116162956	116184149	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_116162983_116183975
ES_00054173	chr7	+	8999	12	FSM	ENSMUSG00000030657.12	ENSMUST00000032892.7	9020	12	21	0	21	0	multi-exon	TRUE	canonical	0	0	junction_1	2.1242402628269	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTTTATGGTTACTTT	NA	False	NA	NA	False	AATAAA	-21	NA	116980234	117272803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_116980756_117074726_117074766_117147818_117148333_117191100_117191274_117192763_117192967_117221146_117221228_117233826_117234044_117236821_117236999_117242704_117242968_117249840_117250037_117255634_117255969_117266522
ES_00054174	chr7	+	4969	15	NIC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_14	17.3487634094403	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTGGATCTCTTTTAG	NA	False	NA	10	True	AATAAA	-20	NA	118311792	118336247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
ES_00054175	chr7	+	3388	1	FSM	ENSMUSG00000030982.20	ENSMUST00000208483.2	3388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATGAAGAAAGATGAA	NA	False	NA	NA	False	AGTAAA	-8	NA	118351417	118354805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_118351400_118354800
ES_00054176	chr7	+	977	1	FSM	ENSMUSG00000109379.2	ENSMUST00000207311.2	2058	1	113	968	113	-968	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGTCAGCTACCTGCA	NA	False	NA	NA	False	TTTAAA	-39	NA	118384478	118385455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_118384500_118385500
ES_00054177	chr7	+	3181	1	FSM	ENSMUSG00000030982.20	ENSMUST00000209103.2	3181	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118424926	118428107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_118424900_118428100
ES_00054178	chr7	+	6583	16	NNC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	9	0	intron_retention	FALSE	canonical	2	8	junction_1	10.3721850264167	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTTCCTCCTCTTAG	NA	False	NA	13	True	AATAAA	-13	NA	119393241	119448162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_119393726_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119430774_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119443481_119443670_119444605_119444725_119447954
ES_00054180	chr7	+	999	3	ISM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	9563	2	9540	1	3prime_fragment	FALSE	canonical	3	56	junction_1	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTGTTTTGTTGATT	NA	False	NA	10	True	TATAAA	-21	NA	119508893	119515977	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_119509186_119513395_119513489_119515363
ES_00054182	chr7	+	3413	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	2	-8	intron_retention	FALSE	canonical	0	0	junction_21	99.2432820141661	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTAAGTCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	120517008	120546647	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530471_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
ES_00054183	chr7	+	3400	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	2	-5	intron_retention	FALSE	canonical	0	0	junction_21	100.499997179635	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTAAGTCTTCAGAATG	NA	False	NA	NA	False	NA	NA	NA	120517008	120546650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527114_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
ES_00054184	chr7	+	1004	1	FSM	ENSMUSG00000052889.12	ENSMUST00000206495.2	955	1	-62	13	-62	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATATGCAAACCCTCTT	NA	False	NA	0	True	ATTAAA	-7	NA	122232608	122233612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122232600_122233600
ES_00054186	chr7	+	218	2	Genic_Genomic	ENSMUSG00000108551.2	novel	584	1	NA	NA	391	57340	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	122594961	122652494	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_+_122595148_122652462
ES_00054187	chr7	+	4030	1	FSM	ENSMUSG00000030779.17	ENSMUST00000205495.2	2276	1	-1754	0	-1754	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTTGCAAATGTATA	NA	False	NA	12	True	AATAAA	-18	NA	122597747	122601777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122597700_122601800
ES_00054188	chr7	+	662	3	FSM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	1736	False	NA	NA	False	NA	NA	NA	122630637	122665662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122630774_122660895_122661022_122665262
ES_00054189	chr7	+	652	4	FSM	ENSMUSG00000052707.9	ENSMUST00000206458.2	688	4	36	0	36	0	multi-exon	FALSE	canonical	1	1	junction_2	58.7896438347965	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAAGCCTTGCCTCGGTA	NA	False	NA	NA	False	NA	NA	NA	122723143	122761886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_122723556_122723890_122723939_122751386_122751409_122761716
ES_00054191	chr7	+	2580	18	NIC	ENSMUSG00000030769.16	novel	2396	17	NA	NA	2	70	combination_of_known_junctions	TRUE	canonical	3	9	junction_3	7.39025824684207	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCTCACTGTGGTACTC	NA	False	NA	85	True	NA	NA	NA	122814004	122872546	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_122814221_122828131_122828215_122832210_122832328_122834820_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
ES_00054193	chr7	+	5835	27	FSM	ENSMUSG00000032743.16	ENSMUST00000124223.8	5874	27	39	0	10	0	multi-exon	FALSE	canonical	2	4	junction_1	5.03772748616398	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAAGCCAGGGCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	125307098	125473720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_125307121_125352144_125352222_125359472_125359643_125360923_125361022_125369743_125369876_125394387_125394653_125396745_125396878_125411951_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125464416_125464583_125465497_125465656_125466774_125466840_125467910_125468022_125469814_125469955_125471322_125471425_125471858_125472020_125472103_125472193_125472618
ES_00054195	chr7	+	425	3	FSM	ENSMUSG00000030714.15	ENSMUST00000123274.8	424	3	-7	6	3	-6	multi-exon	FALSE	canonical	3	451	junction_1	17.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTGCATATTCCAAAGT	117	False	NA	NA	False	NA	NA	NA	126248486	126263265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126248650_126260223_126260321_126263100
ES_00054199	chr7	+	419	3	FSM	ENSMUSG00000030682.5	ENSMUST00000206964.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_2	4	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCCTCTCACACCCCTC	NA	False	NA	NA	False	NA	NA	NA	126577404	126578647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_126577588_126578086_126578169_126578493
ES_00054200	chr7	+	955	6	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	897	11	-174	0	3prime_fragment	FALSE	canonical	3	600	junction_1	477.333007448678	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	3857	False	NA	31	True	AATAAA	-23	NA	126811676	126813459	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ES_00054206	chr7	+	11901	35	NIC	ENSMUSG00000107023.3	novel	12746	31	NA	NA	-7557	-1784	intron_retention	FALSE	canonical	3	15	junction_20	24.5298349519145	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTAATTGCTCTTT	NA	False	NA	17	True	AATAAA	-20	NA	127111198	127164442	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128306_127128397_127129354_127129532_127129611_127129971_127130065_127130244_127130506_127130644_127130891_127131062_127131198_127131392_127133719_127133857_127133946_127134134_127137172_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139_127160958_127162293_127162465_127163955
ES_00054208	chr7	+	1726	9	FSM	ENSMUSG00000030815.12	ENSMUST00000154891.8	1722	9	-4	0	-4	0	multi-exon	FALSE	canonical	3	16	junction_2	40.5768945953236	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172750	127182477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ES_00054209	chr7	+	1639	8	NIC	ENSMUSG00000030815.12	novel	1722	9	NA	NA	24	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	35.729139768142	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCCATGTCTGCTG	NA	False	NA	20	True	AATAAA	-21	NA	127172778	127182473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ES_00054212	chr7	+	3900	18	FSM	ENSMUSG00000030816.9	ENSMUST00000033088.8	3906	18	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_7	101.370743716621	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGCAGAGAAGCCCGTC	NA	False	NA	12	True	AATAAA	-13	NA	127188096	127202757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ES_00054215	chr7	+	4523	11	NIC	ENSMUSG00000030811.15	novel	3449	10	NA	NA	302	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	29.982661656364	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGACTTTTTGTGTCT	846	False	NA	15	True	TATAAA	-19	NA	127345259	127368655	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ES_00054216	chr7	+	315	3	FSM	ENSMUSG00000042308.15	ENSMUST00000143951.2	315	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	19.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGAGACTTTTCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	127376866	127377737	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_+_127376957_127377284_127377450_127377677
ES_00054217	chr7	+	1697	7	NIC	ENSMUSG00000042289.12	novel	1828	7	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	28.5389597256491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTCCTTGTCTACCTTTT	1958	False	NA	9	True	AATAAA	-10	NA	127399849	127402969	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127399887_127400298_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ES_00054221	chr7	+	2573	5	NIC	ENSMUSG00000042178.7	novel	3834	6	NA	NA	763	-1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_3	39.1942278913618	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGGGGTCGTCT	NA	False	NA	9	True	ATTAAA	-20	NA	127837291	127844271	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_127837762_127839053_127839162_127839254_127840042_127842511_127842645_127843196
ES_00054225	chr7	+	3865	17	NNC	ENSMUSG00000030852.19	novel	2934	13	NA	NA	5029	0	intron_retention	FALSE	canonical	2	5	junction_2	101.953401580085	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130203076	130366514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_130203462_130203566_130203668_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ES_00054226	chr7	+	3638	17	NNC	ENSMUSG00000030852.19	novel	2934	13	NA	NA	20	0	intron_retention	FALSE	canonical	1	3	junction_1	84.8704665578669	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130247678	130366514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_130247812_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ES_00054227	chr7	+	5913	11	ISM	ENSMUSG00000040268.18	ENSMUST00000075181.11	2301	13	-13	-1234	0	0	intron_retention	FALSE	canonical	3	88	junction_1	49.3035495679571	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACTCACGTCCCCTTT	NA	False	NA	13	True	AATAAA	-15	NA	130467614	130515032	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065
ES_00054228	chr7	+	3583	13	NNC	ENSMUSG00000040268.18	novel	2301	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_11	78.0035611722667	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACTCACGTCCCCTTT	NA	False	NA	13	True	AATAAA	-15	NA	130467614	130515032	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511282_130511359_130512561
ES_00054230	chr7	+	4668	12	ISM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	195	10	41	0	intron_retention	FALSE	canonical	3	173	junction_1	28.6858158862155	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACTCACGTCCCCTTT	NA	False	NA	13	True	AATAAA	-15	NA	130467680	130515032	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317
ES_00054231	chr7	+	3735	6	NIC	ENSMUSG00000040268.18	novel	743	7	NA	NA	-1159	181	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	90.2086470356362	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCCTTGAATTCTTGGG	NA	False	NA	11	True	AATAAA	-19	NA	130505474	130515223	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_130506288_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
ES_00054252	chr7	+	5357	18	NNC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_7	57.954223672848	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTATGGACTGATGCT	NA	False	NA	81	True	NA	NA	NA	140808707	140842660	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827139_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
ES_00054253	chr7	+	2771	3	NIC	ENSMUSG00000038611.18	novel	1189	5	NA	NA	50	0	intron_retention	FALSE	canonical	3	255	junction_1	27	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTATGGACTGATGCT	3572	False	NA	81	True	NA	NA	NA	140839152	140842660	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_140841456_140841688_140841818_140842321
ES_00054254	chr7	+	1433	4	NIC	ENSMUSG00000038611.18	novel	2519	5	NA	NA	36	0	intron_retention	FALSE	canonical	3	214	junction_1	38.9044413345772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCATTGTGTTCTAAT	4765	False	NA	34	True	NA	NA	NA	140840345	140842613	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_+_140841028_140841125_140841456_140841688_140841818_140842321
ES_00054267	chr7	+	2343	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	613	-1	1	1	3prime_fragment	FALSE	canonical	3	394	junction_5	16.39686381163	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTGTACTGTCTCCTG	NA	False	NA	33	True	NA	NA	NA	143383975	143402148	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ES_00054268	chr7	+	2357	8	ISM	ENSMUSG00000058454.16	ENSMUST00000207143.2	1652	9	2633	-754	2622	1	3prime_fragment	FALSE	canonical	1	13	junction_1	143.172651589839	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTGTACTGTCTCCTG	NA	False	NA	33	True	NA	NA	NA	143386616	143402148	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_+_143386658_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ES_00054269	chr7	-	207	1	Intergenic	novelGene_3574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	680	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCCAAATTCTGTACAG	NA	False	NA	NA	False	NA	NA	NA	3408392	3408185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_3408200_3408400
ES_00054271	chr7	-	531	2	FSM	ENSMUSG00000118635.2	ENSMUST00000239381.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAAGGATTTTATCAT	NA	False	NA	NA	False	NA	NA	NA	3563881	3562451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3562745_3563643
ES_00054272	chr7	-	252	1	FSM	ENSMUSG00000085039.3	ENSMUST00000206440.2	2298	1	455	1591	428	200	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGCTTGCATGCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	3647148	3646896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_3646900_3647100
ES_00054277	chr7	-	703	2	FSM	ENSMUSG00000063838.7	ENSMUST00000140410.2	362	2	174	-515	174	-1	multi-exon	FALSE	canonical	3	148	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTCTATTCACTTTACG	NA	False	NA	0	True	CATAAA	-21	NA	4167267	4154259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4154787_4167091
ES_00054278	chr7	-	2910	6	ISM	ENSMUSG00000008435.16	ENSMUST00000119485.8	2119	7	-25	893	0	4	5prime_fragment	FALSE	canonical	2	7	junction_3	10.0279609093773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCATTGTCCTTTTGTT	NA	False	NA	2	True	AATAAA	-26	NA	4448625	4428661	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_4430802_4433392_4433495_4434420_4434634_4445592_4445749_4447201_4447321_4448445
ES_00054279	chr7	-	3055	7	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_6	9.45163125250522	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	4448636	4428665	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448412
ES_00054282	chr7	-	926	11	ISM	ENSMUSG00000064179.14	ENSMUST00000071798.13	1027	14	2138	-1	531	1	3prime_fragment	FALSE	canonical	0	0	junction_8	20.4890214505232	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGGAGTACAACTTGT	9646	False	NA	83	True	ATTAAA	-16	NA	4516836	4507567	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516579_4516613_4516809
ES_00054283	chr7	-	478	4	FSM	ENSMUSG00000064179.14	ENSMUST00000169571.2	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	3.85861230093008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGTCAGAATGGATCCA	9641	False	NA	NA	False	NA	NA	NA	4512797	4510598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4510612_4511472_4511583_4512009_4512124_4512556
ES_00054284	chr7	-	550	4	FSM	ENSMUSG00000035458.16	ENSMUST00000127736.3	500	4	-50	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.49691252107735	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGGAGAGAAGGGGCGCG	6953	False	NA	NA	False	NA	NA	NA	4525491	4524040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4524094_4524343_4524386_4524814_4525082_4525303
ES_00054286	chr7	-	395	3	FSM	ENSMUSG00000052605.13	ENSMUST00000207502.2	510	3	0	115	0	-115	multi-exon	FALSE	canonical	1	3	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCCTCCTCTGTCACC	NA	False	NA	NA	False	NA	NA	NA	4854228	4852448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_4852567_4853753_4853825_4854022
ES_00054290	chr7	-	605	1	Intergenic	novelGene_3589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCGGTTGCCCAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	7025237	7024632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_7024600_7025200
ES_00054291	chr7	-	3014	5	NNC	ENSMUSG00000063535.8	novel	3028	4	NA	NA	14	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	9.03811374126261	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGGTTGCGTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	7139740	7130071	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_7130271_7133872_7136168_7137165_7137250_7138290_7138418_7139431
ES_00054292	chr7	-	532	1	FSM	ENSMUSG00000109885.2	ENSMUST00000211361.2	390	1	-234	92	-234	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCAGCCTTTTATATCA	NA	False	NA	NA	False	NA	NA	NA	7538197	7537665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_7537700_7538200
ES_00054293	chr7	-	2314	4	ISM	ENSMUSG00000092574.5	ENSMUST00000172930.4	915	5	2503	-1441	2503	1380	3prime_fragment	FALSE	canonical	3	33	junction_2	4.02768199119819	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTTGTTTCTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	8093334	8087944	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259
ES_00054294	chr7	-	1070	1	FSM	ENSMUSG00000110124.2	ENSMUST00000211441.2	1042	1	-101	73	-101	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTGGCAAGAGGTAGAAG	NA	False	NA	NA	False	NA	NA	NA	12528897	12527827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12527800_12528900
ES_00054295	chr7	-	2120	5	NNC	ENSMUSG00000049600.9	novel	3908	3	NA	NA	0	83392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.5155264529768	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAATGCTGCAGAAATTG	NA	False	NA	NA	False	NA	NA	NA	12743727	12654432	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_12654459_12695832_12695873_12739594_12740308_12740950_12742257_12743692
ES_00054296	chr7	-	2484	5	NNC	ENSMUSG00000049600.9	novel	2171	3	NA	NA	0	83392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.0171856540831	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAATGCTGCAGAAATTG	NA	False	NA	NA	False	NA	NA	NA	12743961	12654432	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_12654459_12695832_12695873_12739594_12740308_12740950_12742257_12743562
ES_00054297	chr7	-	606	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7098	False	NA	-11	True	AATAAA	-17	NA	12768571	12765940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
ES_00054298	chr7	-	1764	4	FSM	ENSMUSG00000030380.18	ENSMUST00000182293.8	3749	4	1975	10	14	10	multi-exon	FALSE	canonical	1	2	junction_1	2.94392028877595	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTCCCCAACCTGCACA	NA	False	NA	NA	False	AATAAA	-7	NA	12786293	12777085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_12778474_12785417_12785539_12785659_12785731_12786109
ES_00054299	chr7	-	2596	7	ISM	ENSMUSG00000070808.5	ENSMUST00000210781.2	5975	15	-154	16220	-154	-14316	5prime_fragment	FALSE	canonical	3	9	junction_1	6.31576510716547	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCCTTATGCAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	15782000	15720816	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_15721015_15721403_15723366_15727004_15727071_15730325_15730369_15730475_15730522_15733318_15733420_15781820
ES_00054300	chr7	-	2136	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	69.1555146542963	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	NA	False	NA	-5	True	ATTAAA	-17	NA	16020694	16007966	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_16008342_16009204_16009301_16009662_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ES_00054301	chr7	-	1988	12	NNC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	87.656825223507	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGTGTCCTTGAACC	NA	False	NA	-1	True	AATAAA	-27	NA	16020676	16009388	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014891_16016281_16016531_16016676_16016776_16018149_16018301_16018419_16018472_16020624
ES_00054302	chr7	-	334	1	FSM	ENSMUSG00000110181.2	ENSMUST00000209298.2	299	1	44	-79	44	79	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCCAGCTGACCCAGC	NA	False	NA	NA	False	NA	NA	NA	16138143	16137809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16137800_16138100
ES_00054303	chr7	-	1581	1	FSM	ENSMUSG00000109781.2	ENSMUST00000209624.2	1229	1	-15	-337	-15	337	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCCAAGGGCAGGACAAA	NA	False	NA	NA	False	AAAACA	-23	NA	16141923	16140342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_16140300_16141900
ES_00054304	chr7	-	7669	7	NNC	ENSMUSG00000058230.13	novel	9147	7	NA	NA	100	1215	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_6	35.7848509226398	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCTGCTGTCAGCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	16348762	16228961	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_16231936_16232508_16232615_16245117_16245250_16246332_16246411_16282987_16283133_16295382_16299251_16348396
ES_00054305	chr7	-	200	3	Intergenic	novelGene_3606	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	16	268	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACAAGCAAACCAATCAATA	NA	False	NA	NA	False	AATAGA	-14	NA	16421799	16377838	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_16377853_16419435_16419571_16421748
ES_00054306	chr7	-	2066	14	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	0	48558	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.94202181142	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGGAGGGAGGGAAGGGA	NA	False	NA	NA	False	NA	NA	NA	16761819	16690006	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_16690035_16738576_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ES_00054307	chr7	-	2029	15	NNC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	0	56078	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	61.095651002576	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGACCAGCTAGTTTTAA	2786	False	NA	NA	False	NA	NA	NA	18644314	18568729	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_18568763_18624807_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ES_00054308	chr7	-	2026	15	NNC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	0	56078	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.702366931551	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGACCAGCTAGTTTTAA	2777	False	NA	NA	False	NA	NA	NA	18644323	18568729	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_18568763_18624807_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ES_00054309	chr7	-	1760	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	67.0223843204642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2789	False	NA	-1	True	AATAAA	-18	NA	18644311	18624807	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644278
ES_00054311	chr7	-	1140	5	NNC	ENSMUSG00000002985.17	novel	817	5	NA	NA	0	275447	intron_retention	FALSE	non_canonical	0	0	junction_1	4339.25802989405	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAATGGTGATGCACATT	NA	False	NA	NA	False	NA	NA	NA	19432975	19154586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19154620_19430196_19431029_19431403_19431573_19432112_19432179_19432935
ES_00054312	chr7	-	754	2	NNC	ENSMUSG00000044709.7	novel	763	2	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCAGGCTGCTGTGTGTGT	2947	False	NA	-11	True	AATAAA	-17	NA	19307265	19298875	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_19299598_19307233
ES_00054314	chr7	-	2210	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_10	72.4309326185988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19362359	19340141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362101
ES_00054317	chr7	-	602	4	FSM	ENSMUSG00000002992.18	ENSMUST00000003074.16	631	4	24	5	24	0	multi-exon	FALSE	canonical	1	2	junction_1	1.88561808316413	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCGTGTGGCTTCTT	4271	False	NA	NA	False	AATAAA	-15	NA	19410765	19405508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19405774_19407153_19407305_19407471_19407539_19410646
ES_00054318	chr7	-	358	2	FSM	ENSMUSG00000040564.15	ENSMUST00000207978.2	339	2	0	-19	0	8	multi-exon	FALSE	canonical	2	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTGGACTGGGGT	NA	False	NA	4	True	AATAAA	-27	NA	19426529	19423397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19423562_19426335
ES_00054319	chr7	-	1543	7	ISM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	13	6070	-3	394	5prime_fragment	FALSE	canonical	2	13	junction_3	3.91578004149024	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19530721	19519712	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
ES_00054320	chr7	-	223	1	Intergenic	novelGene_3626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGAGAGAGAGA	2690	False	NA	NA	False	NA	NA	NA	19559734	19559511	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_19559500_19559700
ES_00054321	chr7	-	1553	5	FSM	ENSMUSG00000040498.8	ENSMUST00000043440.8	1908	5	0	355	0	-355	multi-exon	FALSE	canonical	0	0	junction_3	4.60977222864644	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACACCATCGTTGCCATC	8228	False	NA	NA	False	NA	NA	NA	19684681	19671584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_19672176_19673097_19673268_19675674_19675945_19678628_19678839_19684369
ES_00054323	chr7	-	2352	8	NNC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	103	45144	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.2999928642768	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCTAAAACTTCAACT	NA	False	NA	NA	False	NA	NA	NA	23998959	23945319	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_23945348_23990478_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ES_00054324	chr7	-	1059	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCGCGTGCATGCATG	1002	False	NA	NA	False	AATAAA	-21	NA	24371475	24367431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
ES_00054326	chr7	-	6351	20	FSM	ENSMUSG00000003378.10	ENSMUST00000003468.10	3763	20	-2593	5	-2539	-5	multi-exon	FALSE	canonical	1	1	junction_16	1.63751044064253	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTGGGAATACCTGGG	6606	False	NA	-11	True	AATAAA	-17	NA	24774310	24709278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_24710220_24713010_24713133_24713214_24713344_24714729_24714956_24715232_24715399_24721865_24722040_24722410_24722521_24722707_24722822_24745598_24745803_24757708_24757817_24757918_24758024_24758365_24758519_24759894_24760057_24760154_24760209_24762302_24762482_24764553_24764720_24764797_24764896_24767434_24767600_24767868_24767998_24771464
ES_00054329	chr7	-	4013	7	NIC	ENSMUSG00000074272.11	novel	1478	7	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.15453742990631	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATAGCACTTTGTGGGGT	2849	False	NA	-5	True	AATAAA	-17	NA	25177027	25161135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_25164175_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25175768_25176129_25176895
ES_00054330	chr7	-	1059	2	FSM	ENSMUSG00000074272.11	ENSMUST00000206483.2	1060	2	1	0	1	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCGGACTTTTTTGTCA	3748	False	NA	NA	False	NA	NA	NA	25176128	25170799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25171499_25175768
ES_00054332	chr7	-	503	1	FSM	ENSMUSG00000108767.2	ENSMUST00000205306.2	616	1	465	-352	465	352	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATACATATTTTGCAT	NA	False	NA	NA	False	AGTAAA	-33	NA	25491803	25491300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_25491300_25491800
ES_00054333	chr7	-	2307	12	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24700	-250	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_11	23.6887531287189	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATGTGTGTTTTTCAT	NA	False	NA	3	True	CATAAA	-41	NA	26410562	26364901	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26390877_26390954_26410317
ES_00054334	chr7	-	3917	13	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24717	-250	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	23.0595545393998	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATGTGTGTTTTTCAT	NA	False	NA	3	True	CATAAA	-41	NA	26410579	26364901	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385794_26389739_26389834_26390877_26392411_26392894_26393053_26410317
ES_00054335	chr7	-	2120	7	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	23	8049	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	216.296863900828	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCATAACCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	26866204	26850033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26850070_26858082_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ES_00054336	chr7	-	1334	7	NNC	ENSMUSG00000061479.16	novel	1288	6	NA	NA	0	36396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	848.30942991864	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCATAACCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	26895185	26850033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26850079_26886430_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ES_00054337	chr7	-	1188	8	NNC	ENSMUSG00000061479.16	novel	1365	7	NA	NA	-24	36396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	799.842025218807	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCATAACCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	26895473	26850033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26850079_26886430_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
ES_00054338	chr7	-	1187	8	NNC	ENSMUSG00000061479.16	novel	1336	7	NA	NA	-26	36396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	905.632984183337	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCATAACCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	26895475	26850033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_26850079_26886430_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ES_00054340	chr7	-	260	1	Intergenic	novelGene_3647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTACAGTGTACTCATATA	NA	False	NA	NA	False	NA	NA	NA	26948516	26948256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_26948300_26948500
ES_00054343	chr7	-	4252	16	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	18905	0	18905	0	3prime_fragment	FALSE	canonical	2	12	junction_15	7.87287890305841	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27075026	27055807	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495_27064116_27064988_27065186_27065832_27065918_27066024_27066164_27067024_27067270_27068613_27068995_27069826_27070032_27071298_27071430_27071521_27071801_27073570_27073661_27074797
ES_00054344	chr7	-	246	2	NNC	ENSMUSG00000087371.2	novel	2713	4	NA	NA	-1652	-756	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATCCCAGTATTTGGCA	NA	False	NA	NA	False	NA	NA	NA	27209199	27202898	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27203058_27209112
ES_00054345	chr7	-	215	2	NNC	ENSMUSG00000108592.3	novel	878	2	NA	NA	-45078	-77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGGGGGACCGATGAC	1030	False	NA	NA	False	NA	NA	NA	27395562	27348927	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27348957_27395376
ES_00054346	chr7	-	943	2	Intergenic	novelGene_3653	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTCGTGTTTCAAGTTCT	7955	False	NA	NA	False	NA	NA	NA	27388637	27387591	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_27388097_27388199
ES_00054347	chr7	-	200	1	Intergenic	novelGene_3655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAACTTACAAGTAAAG	NA	False	NA	NA	False	NA	NA	NA	27411476	27411276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_27411300_27411500
ES_00054348	chr7	-	2215	1	FSM	ENSMUSG00000108314.2	ENSMUST00000206136.2	1756	1	-250	-209	-250	209	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCCCTACCGGAGGGTG	NA	False	NA	NA	False	NA	NA	NA	27584185	27581970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27582000_27584200
ES_00054349	chr7	-	622	6	Fusion	ENSMUSG00000096916.8_ENSMUSG00000063047.10	novel	3940	6	NA	NA	-61	-2090	multi-exon	FALSE	canonical	3	43	junction_1	22.5068878346163	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGCATAAAGCAATTAATA	NA	False	NA	NA	False	AATAAA	-14	NA	27713601	27664222	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_27664295_27671047_27671147_27673143_27673271_27707808_27707862_27711760_27711876_27713445
ES_00054350	chr7	-	1564	13	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	65173	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	872.512762561863	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATTAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27749481	27675958	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27676078_27716672_27716728_27741136_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ES_00054351	chr7	-	896	7	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-61	-1625	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	44.8578000154067	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATTAGTAACAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	27713601	27689761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711876_27713445
ES_00054352	chr7	-	1994	9	FSM	ENSMUSG00000003436.12	ENSMUST00000108315.4	2618	9	465	159	-1	-113	multi-exon	FALSE	canonical	0	0	junction_6	6.12372435695795	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGGCTGAGAACTTTTT	NA	False	NA	NA	False	TATAAA	-22	NA	28001198	27993136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_27993352_27993465_27993551_27993768_27994349_27995712_27995936_27997943_27998162_27998317_27998561_27999591_27999650_28000708_28000991_28001108
ES_00054353	chr7	-	632	4	FSM	ENSMUSG00000003438.18	ENSMUST00000134263.2	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	2171	junction_3	140.349563590344	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGTTAGGCTCTAGTCC	6710	False	NA	NA	False	NA	NA	NA	28007443	28005852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28005955_28006246_28006404_28006977_28007077_28007169
ES_00054355	chr7	-	5513	19	FSM	ENSMUSG00000037552.18	ENSMUST00000128015.8	5511	19	0	-2	0	1	multi-exon	TRUE	canonical	2	5	junction_17	6.01156293229048	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGCCTTTCTTGAG	NA	False	NA	0	True	NA	NA	NA	28072002	28059027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28070468_28070539_28070671_28071284
ES_00054356	chr7	-	2946	19	FSM	ENSMUSG00000037552.18	ENSMUST00000144700.8	3721	19	775	0	-97	0	multi-exon	FALSE	canonical	0	0	junction_18	7.70201192249928	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAAGGCCATCTGAGTAG	NA	False	NA	NA	False	NA	NA	NA	28071249	28060516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069920_28070539_28070671_28071061
ES_00054357	chr7	-	208	2	Antisense	novelGene_ENSMUSG00000030598.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAAGTCTTTAATCCCAG	NA	False	NA	NA	False	NA	NA	NA	28421452	28346997	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_28347174_28421420
ES_00054358	chr7	-	1260	7	NNC	ENSMUSG00000030595.16	novel	1243	6	NA	NA	0	55308	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.819757947877	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAATGCACTTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	28465939	28402367	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_28402396_28458467_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ES_00054362	chr7	-	1991	6	FSM	ENSMUSG00000030591.18	ENSMUST00000209034.2	1983	6	0	-8	0	8	multi-exon	FALSE	canonical	3	1581	junction_4	157.590101211973	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCAGTCTGGCCCCCTT	NA	False	NA	-2	True	AATAAA	-23	NA	28879906	28873604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ES_00054363	chr7	-	409	1	Intergenic	novelGene_3669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28937111	28936702	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_28936700_28937100
ES_00054364	chr7	-	3282	8	NIC	ENSMUSG00000030583.17	novel	4321	14	NA	NA	-319	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	17.8004815344176	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTGTTCTCCTGCAGC	702	False	NA	-1	True	AATAAA	-17	NA	29041612	29019796	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29041243
ES_00054367	chr7	-	2197	1	Intergenic	novelGene_3675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTAGTTTGCAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	29625688	29623491	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_29623500_29625700
ES_00054368	chr7	-	2835	5	FSM	ENSMUSG00000053985.11	ENSMUST00000207072.2	2835	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	6.81909084849293	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGGAAATGACTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	29750798	29736315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29738842_29742954_29743082_29744144_29744234_29749864_29749929_29750769
ES_00054369	chr7	-	4126	1	FSM	ENSMUSG00000098022.8	ENSMUST00000183025.2	3276	1	245	-1095	245	1095	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGCTGTGTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	29756944	29752818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29752800_29756900
ES_00054370	chr7	-	2041	6	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	32	2	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	15.0332963783729	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	NA	False	NA	NA	False	ATTAAA	-18	NA	29772293	29755458	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29772205
ES_00054371	chr7	-	2939	2	NIC	ENSMUSG00000037029.9	novel	585	3	NA	NA	17	782	intron_retention	FALSE	canonical	3	14	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAAATCCTTCTTTATT	NA	False	NA	1	True	ATTAAA	-19	NA	29869135	29859911	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_29862799_29869083
ES_00054372	chr7	-	2029	2	FSM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGCAGAAATAAAGAAATGC	NA	False	NA	NA	False	AGTAAA	-25	NA	29869152	29860693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29862654_29869083
ES_00054373	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
ES_00054375	chr7	-	4660	33	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	3	7	at_least_one_novel_splicesite	TRUE	canonical	1	24	junction_10	38.4508107034169	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTATAAAGCCCTTCTCA	NA	False	NA	3	True	AATAAA	-28	NA	29979818	29939555	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943332_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ES_00054376	chr7	-	844	2	ISM	ENSMUSG00000036957.9	ENSMUST00000046351.7	2886	3	3155	5	3155	-5	3prime_fragment	FALSE	canonical	3	14	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCTCGGGCTGTTCCT	NA	False	NA	NA	False	AAGAAA	-11	NA	30059042	30054918	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_30055529_30058808
ES_00054377	chr7	-	3570	16	NNC	ENSMUSG00000036915.18	novel	3352	15	NA	NA	-84	4	intron_retention	FALSE	non_canonical	0	0	junction_15	12.4999555554765	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTGTGAAAGACCTCC	NA	False	NA	NA	False	AATAAA	-22	NA	30157199	30146954	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30155844_30155995_30156222_30156585_30156631
ES_00054379	chr7	-	1576	6	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	30.1038203555628	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGAGTCCAGACTTTTCCT	NA	False	NA	1	True	AATAAA	-21	NA	30298273	30289104	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290719_30291391_30298204
ES_00054380	chr7	-	1655	11	NNC	ENSMUSG00000036733.17	novel	1784	10	NA	NA	0	20472	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	299.404225087089	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCCCAGCAAATCCTCTA	3784	False	NA	NA	False	NA	NA	NA	30349569	30319951	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30319996_30340425_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ES_00054382	chr7	-	2070	19	FSM	ENSMUSG00000078762.11	ENSMUST00000132862.8	2070	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	57.7150567683839	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	-4	True	AATAAA	-15	NA	30364358	30353135	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30353481_30353594_30353728_30356373_30356443_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ES_00054383	chr7	-	2069	3	NNC	ENSMUSG00000019429.8	novel	1625	2	NA	NA	-410	45492	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACGTGCCAGAAGGAAAGAA	7256	False	NA	NA	False	NA	NA	NA	30556013	30508262	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30508286_30553743_30555330_30555553
ES_00054384	chr7	-	2333	3	FSM	ENSMUSG00000051314.12	ENSMUST00000053156.10	2301	3	-37	5	-37	4	multi-exon	FALSE	canonical	1	2	junction_1	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATGTTCACGGGTTTTG	3224	False	NA	NA	False	AATAAA	-18	NA	30523237	30517777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30519713_30520101_30520164_30522901
ES_00054385	chr7	-	1534	10	Fusion	ENSMUSG00000058239.14_ENSMUSG00000108352.2	novel	462	3	NA	NA	-90	360	multi-exon	TRUE	canonical	3	69	junction_9	26.5376508677812	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGGGGCCTTCCCTGGGG	8674	False	NA	NA	False	NA	NA	NA	30656318	30625732	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr7_-_30626180_30626260_30626390_30626475_30626571_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
ES_00054386	chr7	-	584	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	900	1	intron_retention	FALSE	canonical	3	7	junction_4	37.2449661028172	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGAATTT	7760	False	NA	-2	True	GATAAA	-24	NA	30736463	30732149	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736359
ES_00054387	chr7	-	883	9	FSM	ENSMUSG00000009687.15	ENSMUST00000161684.8	1172	9	290	-1	-45	1	multi-exon	FALSE	canonical	0	0	junction_7	43.0718875834343	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGAATTT	2607	False	NA	-2	True	GATAAA	-24	NA	30741616	30732149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740883_30741514
ES_00054388	chr7	-	1758	13	FSM	ENSMUSG00000001249.15	ENSMUST00000168884.8	1762	13	0	4	0	0	multi-exon	TRUE	canonical	2	2	junction_11	3.2945662334618	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCTCTGCGTCTACAAA	9120	False	NA	NA	False	AATAAA	-16	NA	30814707	30798153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30814102_30814170_30814560
ES_00054389	chr7	-	2780	19	NIC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_18	68.1823308996809	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	4678	False	NA	-1	True	AATAAA	-15	NA	30851515	30829551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30851261
ES_00054390	chr7	-	2867	20	NIC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_19	77.4223227918279	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	872	False	NA	-1	True	AATAAA	-15	NA	30855321	30829551	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30854291_30854572_30855260
ES_00054392	chr7	-	630	4	FSM	ENSMUSG00000052997.16	ENSMUST00000152037.3	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	721.014254751982	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCTATCATTTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	33843973	33840507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_33840892_33841227_33841278_33842162_33842300_33843914
ES_00054393	chr7	-	1865	12	NNC	ENSMUSG00000066568.13	novel	2944	11	NA	NA	0	11802	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.533218838696	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCAATTTGCCTGATA	NA	False	NA	NA	False	NA	NA	NA	34088904	34032268	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_34032294_34044966_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
ES_00054395	chr7	-	1673	1	FSM	ENSMUSG00000108723.2	ENSMUST00000206863.2	717	1	-962	6	-962	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAACTCCTCTGTGTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	34338099	34336426	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34336400_34338100
ES_00054396	chr7	-	399	2	FSM	ENSMUSG00000056216.10	ENSMUST00000206505.2	399	2	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTGTTGGCAAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	34755408	34750289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_34750358_34755077
ES_00054398	chr7	-	1759	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	-1026	0	84	0	multi-exon	FALSE	canonical	3	20	junction_2	165.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTGCTCCCTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	35255645	35246945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35247549_35250878_35250968_35254578
ES_00054399	chr7	-	604	2	FSM	ENSMUSG00000030417.16	ENSMUST00000151336.2	602	2	0	-2	0	0	multi-exon	FALSE	canonical	3	1876	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGTGTTTCAGAATCA	NA	False	NA	NA	False	AATAAA	-22	NA	35342469	35341436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35341611_35342039
ES_00054400	chr7	-	832	3	FSM	ENSMUSG00000030417.16	ENSMUST00000127213.8	832	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	889.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGACATAGCTTGTGAAA	NA	False	NA	NA	False	NA	NA	NA	35346929	35343246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_35343838_35345568_35345607_35346726
ES_00054401	chr7	-	1399	9	NNC	ENSMUSG00000043671.15	novel	493	4	NA	NA	-19	-1042	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5.54526825320471	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTACATTTCATTGGA	NA	False	NA	NA	False	NA	NA	NA	35453843	35416434	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_35416776_35420969_35421105_35422131_35422256_35424715_35424862_35426714_35426837_35429110_35429202_35449164_35449299_35452039_35452182_35453679
ES_00054402	chr7	-	1994	13	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	0	62709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.639538707279	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAACCAAAAGTGAATCA	NA	False	NA	NA	False	NA	NA	NA	37806927	37734699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_37734726_37797408_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ES_00054404	chr7	-	4839	2	ISM	ENSMUSG00000090744.8	ENSMUST00000164677.2	531	3	8416	213	8416	-213	3prime_fragment	FALSE	canonical	3	230	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAGATACTGGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	41201803	41196048	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_41196224_41197139
ES_00054406	chr7	-	317	2	Intergenic	novelGene_3694	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGTGCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	42048557	42048132	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_42048406_42048513
ES_00054407	chr7	-	3970	2	FSM	ENSMUSG00000092416.3	ENSMUST00000174489.2	533	2	-215	-3222	-215	198	multi-exon	FALSE	canonical	3	247	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTTTAATCCCAGCACT	NA	False	NA	NA	False	AGTAAA	-30	NA	42127002	42122611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42126108_42126528
ES_00054408	chr7	-	3972	6	NIC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	125	junction_5	88.2813683627525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155121	42122809	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42155033
ES_00054409	chr7	-	358	2	Antisense	novelGene_ENSMUSG00000092505.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCTAAAGTCTCAACTAT	NA	False	NA	NA	False	NA	NA	NA	42175513	42128646	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_42128973_42175481
ES_00054410	chr7	-	3206	1	FSM	ENSMUSG00000108446.2	ENSMUST00000205775.2	3535	1	-324	653	-324	-653	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATTTTCTTTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	42226503	42223297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_42223300_42226500
ES_00054411	chr7	-	1996	3	Intergenic	novelGene_3697	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	34.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGCAAAGAAGACATTAGAG	NA	False	NA	NA	False	NA	NA	NA	42649493	42647341	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_42648312_42648389_42648664_42648741
ES_00054413	chr7	-	1593	4	FSM	ENSMUSG00000004473.11	ENSMUST00000004587.11	2978	4	0	1385	0	-1385	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACACAAGCTAGGGGCTT	NA	False	NA	NA	False	NA	NA	NA	43956326	43953495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_43954411_43955252_43955445_43955696_43955899_43956042
ES_00054414	chr7	-	429	2	FSM	ENSMUSG00000008140.19	ENSMUST00000147102.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGCCGGTGAGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	44141442	44140308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44140674_44141378
ES_00054415	chr7	-	1654	9	ISM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	16318	-325	740	325	3prime_fragment	FALSE	canonical	0	0	junction_8	6.54670718758675	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGACTCAGTGGTAGAG	NA	False	NA	NA	False	NA	NA	NA	44157762	44150797	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458_44156627_44157654
ES_00054419	chr7	-	346	1	FSM	ENSMUSG00000108832.2	ENSMUST00000208849.2	2303	1	1984	-27	1984	27	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAATCTGACTGTCACCC	3381	False	NA	NA	False	AATAAA	-28	NA	44243319	44242973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44243000_44243300
ES_00054420	chr7	-	5026	28	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	26778	0	-5938	0	3prime_fragment	FALSE	canonical	2	8	junction_26	22.3181263871343	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	44288147	44255226	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806_44281968_44282358_44282429_44282898_44283021_44283782_44283971_44287188_44287304_44287713
ES_00054421	chr7	-	3740	5	FSM	ENSMUSG00000048012.20	ENSMUST00000060270.13	3800	5	71	-11	71	0	multi-exon	FALSE	canonical	2	7	junction_4	22.9605640174626	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTTTTAATTTTT	NA	False	NA	-5	True	AATAAA	-24	NA	44397970	44380903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397775
ES_00054426	chr7	-	2423	3	FSM	ENSMUSG00000002968.10	ENSMUST00000207196.2	2427	3	0	4	0	-4	multi-exon	FALSE	canonical	3	955	junction_1	18.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCCAAAATAAAAAAACAAA	6950	False	NA	NA	False	NA	NA	NA	44541841	44539141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44541332_44541522_44541569_44541654
ES_00054427	chr7	-	2454	1	FSM	ENSMUSG00000109198.2	ENSMUST00000208484.2	3795	1	-254	1595	-254	-1595	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATTTTTTTTTTTTAA	6151	False	NA	NA	False	NA	NA	NA	44547777	44545323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44545300_44547800
ES_00054428	chr7	-	600	6	FSM	ENSMUSG00000007783.11	ENSMUST00000211862.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	17.9666357451806	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGCAATGCTGTGCATAC	4438	False	NA	NA	False	NA	NA	NA	44622501	44616286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44616332_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433
ES_00054431	chr7	-	667	5	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	0	-11	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	66.4115953730973	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAACTAGAGCCCGAAAG	NA	False	NA	NA	False	ATTAAA	-10	NA	44646986	44640656	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44640879_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ES_00054433	chr7	-	1187	7	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-17	2	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	13.1106402928648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTTCTGGGCGCATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	44711845	44703005	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011_44711076_44711801
ES_00054434	chr7	-	747	3	NNC	ENSMUSG00000003420.9	novel	595	2	NA	NA	-2690	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	41.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTCGTCTCTGTGTCC	NA	False	NA	NA	False	AATACA	-11	NA	44755965	44752260	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44752698_44753063_44753189_44755780
ES_00054435	chr7	-	690	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209812.2	690	8	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	5944.08936744421	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTCCTTAGGCACTGC	NA	False	NA	45	True	NA	NA	NA	44778147	44775295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776512_44776632_44776699_44776919_44776993_44778123
ES_00054438	chr7	-	3156	20	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	4407	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_19	19.7293319044544	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCTCTGGTGGTGAC	9213	False	NA	-8	True	NA	NA	NA	45005130	44988704	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582_45004715_45005037
ES_00054439	chr7	-	1674	11	NNC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	1953	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	448.369724669273	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGGGCCATCTCTGAGGT	9125	False	NA	NA	False	NA	NA	NA	45045082	45023923	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_45023955_45025884_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ES_00054442	chr7	-	731	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210375.2	710	4	0	-21	0	20	multi-exon	TRUE	canonical	3	11	junction_3	30194.0672355054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGAGGGGTGCACGAGA	NA	False	NA	1	True	AATAAA	-37	NA	45108845	45107347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108747
ES_00054443	chr7	-	202	1	Intergenic	novelGene_3715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTATATGAGTACACTG	9773	False	NA	NA	False	NA	NA	NA	45127910	45127708	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_45127700_45127900
ES_00054444	chr7	-	574	4	FSM	ENSMUSG00000030824.18	ENSMUST00000209436.2	615	4	41	0	25	0	multi-exon	FALSE	canonical	1	6	junction_3	269.35602214665	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGCCCAGTGAGCGTGG	NA	False	NA	NA	False	NA	NA	NA	45159714	45151016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45151140_45152601_45152710_45159129_45159272_45159513
ES_00054445	chr7	-	219	2	Antisense	novelGene_ENSMUSG00000040428.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTCTTGCTTGGAGAAA	9594	False	NA	NA	False	NA	NA	NA	45194892	45176043	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_45176069_45194698
ES_00054446	chr7	-	2402	3	ISM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	8697	-11	8697	11	3prime_fragment	TRUE	canonical	3	9	junction_2	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTGAGTGGGTTGAAGAC	5634	False	NA	NA	False	AATAAA	-32	NA	45335129	45327098	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_45328949_45333603_45333716_45334689
ES_00054447	chr7	-	1123	7	FSM	ENSMUSG00000003271.18	ENSMUST00000075571.16	1193	7	70	0	-12	0	multi-exon	FALSE	canonical	0	0	junction_6	5.39804491356722	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	NA	False	NA	NA	False	AATAAA	-17	NA	45408966	45379406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45408815
ES_00054450	chr7	-	1847	10	FSM	ENSMUSG00000040136.11	ENSMUST00000210986.2	1845	10	0	-2	0	2	multi-exon	FALSE	canonical	1	2	junction_2	1.49897084035912	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGGGTATGTGCAC	1339	False	NA	NA	False	AATATA	-18	NA	45829457	45800017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_45800314_45800959_45801095_45803840_45803997_45806530_45806696_45815342_45815532_45816316_45816560_45819247_45819415_45824783_45824906_45827865_45828008_45829225
ES_00054451	chr7	-	555	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46365124	46361421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
ES_00054453	chr7	-	1458	11	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	8230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.546090613006	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTCTTTAAGACTCAAAA	NA	False	NA	NA	False	NA	NA	NA	46569617	46530466	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_46530498_46539118_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ES_00054454	chr7	-	228	2	Intergenic	novelGene_3722	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTGGTGGCATGACCAT	NA	False	NA	NA	False	NA	NA	NA	46591931	46582302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_46582339_46591739
ES_00054457	chr7	-	2608	1	FSM	ENSMUSG00000109494.2	ENSMUST00000208590.2	2608	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGGACATCGGTGGG	NA	False	NA	NA	False	NA	NA	NA	50610397	50607789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_50607800_50610400
ES_00054459	chr7	-	1868	1	FSM	ENSMUSG00000108358.2	ENSMUST00000205400.2	1324	1	-550	6	-550	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTGAGTCTGTGTTGAT	NA	False	NA	NA	False	AATAAA	-10	NA	55625140	55623272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_55623300_55625100
ES_00054460	chr7	-	1020	1	FSM	ENSMUSG00000086926.3	ENSMUST00000117765.2	1146	1	-67	193	-67	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGACTTCTCCGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	58487753	58486733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_58486700_58487800
ES_00054461	chr7	-	1588	1	FSM	ENSMUSG00000000948.17	ENSMUST00000191456.2	3937	1	-53	2402	-53	1368	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTCCAAAGGACATACTT	NA	False	NA	NA	False	NA	NA	NA	59630477	59628889	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_59628900_59630500
ES_00054464	chr7	-	554	1	FSM	ENSMUSG00000108700.2	ENSMUST00000206446.2	505	1	-7	-42	-7	42	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACTTAAAAAAAAAAAAGT	NA	False	NA	NA	False	AATAAA	-10	NA	63461085	63460531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_63460500_63461100
ES_00054466	chr7	-	326	1	FSM	ENSMUSG00000108472.2	ENSMUST00000205831.2	3403	1	383	2694	383	-2694	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCATCTTGAGAGCGCGC	2142	False	NA	NA	False	NA	NA	NA	63937575	63937249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_63937200_63937600
ES_00054467	chr7	-	6804	28	NIC	ENSMUSG00000030516.15	novel	7049	28	NA	NA	-74	0	intron_retention	FALSE	canonical	1	4	junction_26	52.8973953113669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTAGTTTGGTTTATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	65177603	64945912	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_64947416_64949477_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65162946_65163080_65177311
ES_00054468	chr7	-	2452	10	NIC	ENSMUSG00000030557.18	novel	2664	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	19.1369334592098	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGAAAGAAAACACCCTT	NA	False	NA	NA	False	ATTAAA	-29	NA	66966713	66883786	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_66884977_66886271_66886399_66890061_66890189_66894268_66894293_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539
ES_00054470	chr7	-	934	3	NNC	ENSMUSG00000108387.2	novel	239	2	NA	NA	-91	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCATGTTACCTCAATAA	NA	False	NA	NA	False	NA	NA	NA	78922650	78921474	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_78922092_78922195_78922308_78922445
ES_00054473	chr7	-	518	2	FSM	ENSMUSG00000108776.2	ENSMUST00000205717.2	639	2	121	0	121	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTATGAAGTGTTTAATAA	NA	False	NA	NA	False	AAGAAA	-6	NA	79242240	79236395	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79236799_79242125
ES_00054475	chr7	-	1476	1	FSM	ENSMUSG00000108655.2	ENSMUST00000206423.2	1450	1	-40	14	-40	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCCACCATGCATGGC	2889	False	NA	NA	False	NA	NA	NA	79740219	79738743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79738700_79740200
ES_00054479	chr7	-	907	8	FSM	ENSMUSG00000030533.17	ENSMUST00000133728.8	907	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	22.2444673240474	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCTGAAGGTTCTCATC	NA	False	NA	NA	False	NA	NA	NA	79989954	79983929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989861
ES_00054480	chr7	-	6171	24	NNC	ENSMUSG00000038886.11	novel	6554	24	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.7811996250846	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGAAGTTACTTGT	4518	False	NA	3	True	AATAAA	-24	NA	80020606	79998840	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_79999222_79999263_80001600_80002673_80002782_80002909_80003111_80006089_80006227_80007990_80008133_80008657_80008792_80009027_80009143_80009383_80009507_80010643_80010881_80012046_80012213_80012356_80012425_80012636_80012752_80012901_80013085_80013214_80013418_80013675_80013854_80016616_80016804_80017058_80017233_80017444_80017573_80017961_80018134_80018253_80018399_80018467_80018726_80019340_80019494_80020479
ES_00054481	chr7	-	232	1	Intergenic	novelGene_3746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGCCTACACTTGGACC	NA	False	NA	NA	False	NA	NA	NA	80004652	80004420	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_80004400_80004700
ES_00054482	chr7	-	932	5	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7393	-16	-396	-1	3prime_fragment	FALSE	canonical	2	10	junction_1	2.77263412660235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTGACATGTGTGCTCC	NA	False	NA	-3	True	AATAAA	-21	NA	80029774	80027504	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565
ES_00054483	chr7	-	239	1	Intergenic	novelGene_3747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAAGGAGCTGGGGACT	NA	False	NA	NA	False	AATAAA	-34	NA	80044398	80044159	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_80044200_80044400
ES_00054484	chr7	-	485	2	FSM	ENSMUSG00000030528.13	ENSMUST00000206948.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTAACTGGATCCCGC	6323	False	NA	NA	False	AGTAAA	-5	NA	80109001	80105140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80105185_80108560
ES_00054485	chr7	-	383	3	FSM	ENSMUSG00000030528.13	ENSMUST00000206989.2	383	3	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	199	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAACGACTTCTAAAAG	4752	False	NA	NA	False	GGGGCT	-12	NA	80110572	80105168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80105185_80108560_80108745_80110389
ES_00054486	chr7	-	3402	2	ISM	ENSMUSG00000030527.16	ENSMUST00000122255.8	5115	15	98430	9	8689	-9	3prime_fragment	FALSE	canonical	3	8	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATCTGCTCTCGGTGTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	80240195	80236383	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_80239700_80240109
ES_00054487	chr7	-	649	8	FSM	ENSMUSG00000030527.16	ENSMUST00000127326.2	649	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.72498997414682	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTCTCCCTTAGCAACC	NA	False	NA	NA	False	NA	NA	NA	80279374	80245529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80245657_80248494_80248713_80254098_80254149_80255495_80255582_80259644_80259681_80268341_80268405_80270269_80270332_80279367
ES_00054489	chr7	-	560	7	FSM	ENSMUSG00000030536.11	ENSMUST00000205813.2	560	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	298.178591153393	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAGATTCAAGACCTGT	NA	False	NA	NA	False	NA	NA	NA	80466567	80412286	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80458795_80458863_80466513
ES_00054490	chr7	-	1782	8	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	31	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	45.3332332932069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAAGCAATTAGCAATT	NA	False	NA	-9	True	AATAAA	-18	NA	80550936	80541010	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550643
ES_00054492	chr7	-	3198	1	FSM	ENSMUSG00000109390.2	ENSMUST00000207577.2	3794	1	592	4	592	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	80563322	80560124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80560100_80563300
ES_00054493	chr7	-	1044	3	FSM	ENSMUSG00000025724.13	ENSMUST00000130981.8	1044	3	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	41	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	NA	False	NA	-5	True	AATAAA	-18	NA	80573306	80565124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_80565653_80565922_80565981_80572848
ES_00054494	chr7	-	3228	12	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	-27	34	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	19.84068780466	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGGGTGTGGTAGCAAG	NA	False	NA	34	True	NA	NA	NA	81105167	80996739	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104959
ES_00054495	chr7	-	1988	1	FSM	ENSMUSG00000104453.2	ENSMUST00000193864.2	2213	1	1019	-794	1019	794	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAACAGAGCTAAACGCAA	NA	False	NA	NA	False	NA	NA	NA	81181250	81179262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81179300_81181200
ES_00054498	chr7	-	556	4	FSM	ENSMUSG00000025103.9	ENSMUST00000208114.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	292.588827917647	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGAGTGTCTTGAGTA	5254	False	NA	-3	True	CATAAA	-15	NA	81450241	81443262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450132
ES_00054499	chr7	-	499	1	FSM	ENSMUSG00000109541.2	ENSMUST00000208037.2	629	1	184	-54	184	54	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACACAACTCACTCCCTT	NA	False	NA	NA	False	TATAAA	-15	NA	82616241	82615742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_82615700_82616200
ES_00054500	chr7	-	1384	15	NNC	ENSMUSG00000030630.17	novel	1585	14	NA	NA	0	16880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.5297016730112	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAAGGTGGTCACAACG	NA	False	NA	NA	False	NA	NA	NA	84254937	84217486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_84217505_84234372_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
ES_00054501	chr7	-	1681	8	NNC	ENSMUSG00000030629.16	novel	967	8	NA	NA	0	11079	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	232.454252686065	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84339091	84251894	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_84251974_84264252_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ES_00054502	chr7	-	1677	8	NNC	ENSMUSG00000030629.16	novel	967	8	NA	NA	0	11079	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.663509142904	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84339091	84251894	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_84251973_84264252_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283199_84283446_84283618_84338953
ES_00054504	chr7	-	293	1	FSM	ENSMUSG00000039428.12	ENSMUST00000207335.2	1558	1	19	1246	19	887	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCAGGGCATGTGTCT	NA	False	NA	NA	False	TATAAA	-38	NA	88794686	88794393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_88794400_88794700
ES_00054505	chr7	-	773	5	FSM	ENSMUSG00000030619.11	ENSMUST00000207980.2	767	5	0	-6	0	0	multi-exon	FALSE	canonical	3	461	junction_2	814.365090116221	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTAGAAAGCTATTTAC	NA	False	NA	-2	True	AATAAA	-33	NA	89614049	89603861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936
ES_00054507	chr7	-	1720	1	FSM	ENSMUSG00000041328.17	ENSMUST00000208255.2	1720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTCTTTTTTATTTAC	NA	False	NA	NA	False	AATAAA	-15	NA	92319111	92317391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_92317400_92319100
ES_00054508	chr7	-	815	3	Antisense	novelGene_ENSMUSG00000048078.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTACCTCATGGAATTAT	NA	False	NA	NA	False	ATTAAA	-29	NA	95838197	95831491	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr7_-_95832116_95835874_95835964_95838095
ES_00054509	chr7	-	2856	6	ISM	ENSMUSG00000035713.16	ENSMUST00000168435.7	3982	10	5901	26	-4068	0	3prime_fragment	FALSE	canonical	2	4	junction_5	1.95959179422654	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCAGGATGCTGTTC	NA	False	NA	0	True	AATAAA	-16	NA	96969270	96958612	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_96959704_96960559_96961833_96962262_96962370_96962705_96962800_96963940_96964135_96969173
ES_00054511	chr7	-	694	2	Genic_Genomic	ENSMUSG00000108442.2	novel	605	1	NA	NA	0	69381	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAGATTGTAAGAAAAA	NA	False	NA	NA	False	AAAAAG	-3	NA	97244648	97174662	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr7_-_97174690_97243981
ES_00054512	chr7	-	776	4	FSM	ENSMUSG00000035642.17	ENSMUST00000072725.12	776	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	25.8069758011279	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCATTAGCGATCT	NA	False	NA	NA	False	AATAAA	-28	NA	97228686	97199540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97199949_97214357_97214508_97224794_97224899_97228572
ES_00054513	chr7	-	638	1	FSM	ENSMUSG00000108405.2	ENSMUST00000206623.2	710	1	69	3	69	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1545	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGAGCTGAATCTGCCC	NA	False	NA	NA	False	NA	NA	NA	97241540	97240902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97240900_97241500
ES_00054514	chr7	-	256	2	Intergenic	novelGene_3767	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTACATGTGAACTTAAG	NA	False	NA	NA	False	NA	NA	NA	97423324	97349717	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_97349860_97423210
ES_00054515	chr7	-	2210	1	FSM	ENSMUSG00000074006.4	ENSMUST00000098281.4	2144	1	-64	-2	-64	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGGTGTGGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	97794773	97792563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_97792600_97794800
ES_00054521	chr7	-	1135	4	FSM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	3	-5	3	5	multi-exon	FALSE	canonical	1	1	junction_1	8.17856276425687	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTCTAATTGGAAGTGC	9367	False	NA	NA	False	AATAAA	-26	NA	98352132	98331537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98332125_98342226_98342478_98342554_98342809_98352089
ES_00054522	chr7	-	2193	6	FSM	ENSMUSG00000070436.13	ENSMUST00000208119.2	2173	6	0	-20	0	6	multi-exon	FALSE	canonical	3	37	junction_5	754.843400977978	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGATTTATGCAGAGT	NA	False	NA	NA	False	ATTAAA	-36	NA	99002321	98994576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088_99002173_99002259
ES_00054523	chr7	-	843	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	46273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6374.2708426541	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAGAAACTAAGAGCCAAG	8439	False	NA	NA	False	NA	NA	NA	99132841	99080829	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99080859_99128091_99128159_99128480_99128678_99129082_99129269_99130902_99130999_99131467_99131562_99131776_99131908_99132798
ES_00054524	chr7	-	844	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	46273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5406.63746647374	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAGAAACTAAGAGCCAAG	8439	False	NA	NA	False	NA	NA	NA	99132841	99080829	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99080859_99128091_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ES_00054525	chr7	-	2976	12	NNC	ENSMUSG00000030726.17	novel	3069	12	NA	NA	-18	-15	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_4	154.789059343876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTTGAATTGGAGCTCT	NA	False	NA	-19	True	AATAAA	-3	NA	99770691	99731332	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742692_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ES_00054527	chr7	-	2164	1	FSM	ENSMUSG00000030706.18	ENSMUST00000208916.2	2144	1	0	-20	0	20	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	100232282	100230118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100230100_100232300
ES_00054528	chr7	-	4516	21	FSM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	5.07346035758633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATGGCTCCCCCGGGC	6852	False	NA	-13	True	AATAAA	-11	NA	100543897	100521341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385_100530600_100530899_100531019_100531426_100531513_100531616_100531727_100531979_100532031_100532322_100532500_100532676_100532770_100532974_100533092_100534883_100535067_100539627_100539706_100543649
ES_00054529	chr7	-	803	2	ISM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	13541	712	244	-30	intron_retention	FALSE	canonical	3	170	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCTTCTTCTGGACACC	NA	False	NA	NA	False	NA	NA	NA	101473469	101472557	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_101472611_101472719
ES_00054530	chr7	-	1237	7	FSM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	70	0	-4	0	multi-exon	FALSE	canonical	2	3	junction_6	137.705502996632	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	1525	False	NA	0	True	AATAAA	-31	NA	101519925	101507537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363_101518512_101519815
ES_00054531	chr7	-	874	6	FSM	ENSMUSG00000064307.14	ENSMUST00000078448.11	873	6	0	-1	0	0	multi-exon	FALSE	canonical	1	2	junction_4	5.00399840127872	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTCCCCTGTACCTTG	2536	False	NA	NA	False	AATAAA	-23	NA	101583064	101562195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101570710_101570774_101582970
ES_00054532	chr7	-	818	2	NNC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	63376	28695	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAAGTGCTGAGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	101769396	101739909	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_101739938_101768606
ES_00054533	chr7	-	200	1	Intergenic	novelGene_3779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGCAGAGTAACAGCTCA	NA	False	NA	NA	False	AAAACA	-1	NA	101944018	101943818	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_101943800_101944000
ES_00054534	chr7	-	351	1	FSM	ENSMUSG00000083854.4	ENSMUST00000120890.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATCTGATGAATTTTAA	NA	False	NA	NA	False	AATGAA	-37	NA	103532211	103531860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_103531900_103532200
ES_00054535	chr7	-	1685	1	FSM	ENSMUSG00002074911.1	ENSMUST00020182379.1	100	1	-249	-1336	-249	1336	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGTCCAACCTTTTCTT	NA	False	NA	-1	True	AATAAA	-15	NA	103989645	103987960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_103988000_103989600
ES_00054536	chr7	-	375	1	FSM	ENSMUSG00000094685.3	ENSMUST00000179862.3	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCAGTGGTTCTGATGC	NA	False	NA	NA	False	GATAAA	-20	NA	104599496	104599121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_104599100_104599500
ES_00054537	chr7	-	364	1	FSM	ENSMUSG00000109609.2	ENSMUST00000211108.2	1254	1	500	390	500	-390	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTAGTCCATTCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	105062680	105062316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105062300_105062700
ES_00054538	chr7	-	285	3	FSM	ENSMUSG00000030881.16	ENSMUST00000126589.2	286	3	0	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_2	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCCCACGGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	105287122	105286327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105286486_105286858_105286933_105287069
ES_00054539	chr7	-	456	3	FSM	ENSMUSG00000043866.12	ENSMUST00000146999.2	456	3	0	0	0	0	multi-exon	FALSE	canonical	3	1257	junction_1	56	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGACAGGCGGGGCTGA	7190	False	NA	-40	True	AATAAA	-5	NA	105392817	105392112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105392271_105392432_105392548_105392634
ES_00054541	chr7	-	869	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176158.2	869	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1127	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGATTTATGGAAAGTAA	NA	False	NA	-5	True	GATAAA	-43	NA	105460165	105458863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105459352_105459495_105459726_105460014
ES_00054542	chr7	-	419	2	FSM	ENSMUSG00000030879.11	ENSMUST00000033170.7	1028	2	0	609	0	-168	multi-exon	FALSE	canonical	3	2255	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGTTTCTGTGTAACT	NA	False	NA	NA	False	NA	NA	NA	105460203	105459495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_105459726_105460014
ES_00054543	chr7	-	5721	6	ISM	ENSMUSG00000031026.16	ENSMUST00000106741.10	4417	20	50474	-4775	17474	5	3prime_fragment	FALSE	canonical	1	2	junction_1	1.49666295470958	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCCTAGAGTGTTTTT	NA	False	NA	2	True	AATAAA	-26	NA	109056867	109048207	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_109053242_109054233_109054453_109054838_109054992_109055268_109055344_109056252_109056380_109056754
ES_00054544	chr7	-	4367	21	NIC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	33	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	53.1594535336849	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGAGTCTTATTGTGTTC	NA	False	NA	-5	True	AATAAA	-19	NA	109271527	109123124	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264_109216355_109271408
ES_00054545	chr7	-	4418	21	NNC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	-15060	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_20	51.7483091511211	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109286620	109123126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264_109216355_109286448
ES_00054546	chr7	-	3911	8	NIC	ENSMUSG00000034825.15	novel	3927	8	NA	NA	-12	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_6	6.80036013452109	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGTGCTTGTCTGAGT	NA	False	NA	-8	True	AATAAA	-12	NA	109381244	109357268	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_109360397_109360853_109360949_109361027_109361081_109362690_109362831_109364672_109364756_109365679_109365821_109380506_109380668_109381134
ES_00054547	chr7	-	341	2	Intergenic	novelGene_3797	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	6	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAAGGTTATAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	109389002	109388303	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_109388571_109388928
ES_00054548	chr7	-	3562	22	FSM	ENSMUSG00000007279.15	ENSMUST00000106729.8	3563	22	1	0	1	0	multi-exon	FALSE	canonical	1	3	junction_18	1.71560795568113	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATTAGAAACAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	109464885	109397896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109398613_109399780_109399861_109403814_109403968_109405249_109405448_109407615_109407778_109408284_109408453_109423971_109424179_109424525_109424682_109428241_109428347_109430003_109430088_109430334_109430452_109430873_109430997_109432215_109432333_109436200_109436324_109437286_109437404_109442386_109442477_109443083_109443201_109446129_109446256_109451640_109451776_109456727_109456854_109463311_109463435_109464666
ES_00054549	chr7	-	815	6	FSM	ENSMUSG00000047554.15	ENSMUST00000135565.2	815	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_3	150.388829372397	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATATTACATCTCCTG	NA	False	NA	NA	False	NA	NA	NA	109585456	109575866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109575941_109577916_109578022_109578595_109578697_109580195_109580325_109581862_109581981_109585168
ES_00054551	chr7	-	1987	1	FSM	ENSMUSG00000073867.3	ENSMUST00000098110.3	3339	1	1462	-110	1462	110	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACAGGGTTTCTCTGTGT	6627	False	NA	NA	False	NA	NA	NA	109659070	109657083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_109657100_109659100
ES_00054552	chr7	-	208	1	Intergenic	novelGene_3800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATGTAAATGAAG	2116	False	NA	NA	False	NA	NA	NA	109701485	109701277	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_-_109701300_109701500
ES_00054555	chr7	-	3350	23	NNC	ENSMUSG00000030754.10	novel	3346	22	NA	NA	0	23179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.611182410083	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGGGGTGGGCTTTATC	NA	False	NA	NA	False	NA	NA	NA	113853926	113791614	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_113791639_113814793_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
ES_00054557	chr7	-	1887	4	FSM	ENSMUSG00000030670.17	ENSMUST00000211506.2	1887	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.94392028877595	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTTACATCCTGATCA	NA	False	NA	NA	False	NA	NA	NA	114162125	114148916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_114149683_114150987_114151318_114151955_114152589_114161967
ES_00054558	chr7	-	592	4	FSM	ENSMUSG00000087621.8	ENSMUST00000140689.8	633	4	22	19	22	-19	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTTTTCTAGAGCAAC	5823	False	NA	NA	False	AATAAA	-18	NA	115692372	115681012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115681322_115685861_115685991_115688347_115688426_115692296
ES_00054559	chr7	-	2829	18	FSM	ENSMUSG00000030660.10	ENSMUST00000206385.2	2830	18	1	0	1	0	multi-exon	FALSE	canonical	0	0	junction_8	23.001128300894	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAGAATAGAAAAAAATACG	NA	False	NA	NA	False	NA	NA	NA	115967424	115938839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278
ES_00054560	chr7	-	556	3	FSM	ENSMUSG00000008683.17	ENSMUST00000134270.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	3	8104	junction_1	1649.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCTTCCTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	117714451	117708885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117709242_117714007_117714088_117714331
ES_00054561	chr7	-	785	2	FSM	ENSMUSG00000030655.16	ENSMUST00000178025.2	785	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCAATTGTTAAGTGTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	117741022	117740007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_117740713_117740942
ES_00054562	chr7	-	1602	7	FSM	ENSMUSG00000058420.9	ENSMUST00000203485.3	1932	7	324	6	158	-6	multi-exon	FALSE	canonical	1	1	junction_3	2.3392781412697	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGACCCTTGAATAATAT	NA	False	NA	NA	False	NA	NA	NA	118047121	118006943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118007404_118009146_118009268_118033055_118033676_118036045_118036195_118041570_118041720_118042341_118042360_118047036
ES_00054564	chr7	-	4852	5	FSM	ENSMUSG00000030980.18	ENSMUST00000063607.12	4884	5	47	-15	38	0	multi-exon	FALSE	canonical	3	187	junction_3	184.092877374438	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	NA	False	NA	-17	True	AATAAA	-16	NA	118455177	118441444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454845
ES_00054566	chr7	-	744	2	FSM	ENSMUSG00000030942.9	ENSMUST00000209175.2	744	2	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	0	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAGTAACTCAAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	119319987	119318034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119318525_119319733
ES_00054567	chr7	-	960	9	FSM	ENSMUSG00000030929.18	ENSMUST00000106523.8	973	9	0	13	0	-13	multi-exon	FALSE	canonical	1	1	junction_1	25.2128439490669	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATTCTCTGCAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	119393190	119367914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119368116_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ES_00054568	chr7	-	3360	8	NIC	ENSMUSG00000030929.18	novel	3487	9	NA	NA	4	-1	intron_retention	FALSE	canonical	2	5	junction_2	31.5083403276669	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGACATGTAGAACATCAG	NA	False	NA	-18	True	AATAAA	-18	NA	119393178	119383067	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_119385768_119385961_119386051_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391567_119391653_119391722_119393140
ES_00054569	chr7	-	2163	18	FSM	ENSMUSG00000030911.8	ENSMUST00000033207.6	2221	18	41	17	40	-3	multi-exon	TRUE	canonical	0	0	junction_1	0.322189739708921	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTTACATGTTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	119744472	119731579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_119731770_119732560_119732639_119732952_119733050_119733130_119733267_119734374_119734565_119734703_119734829_119734925_119735018_119735105_119735288_119736357_119736485_119737229_119737415_119737511_119737609_119738910_119739073_119740449_119740495_119741054_119741205_119742812_119742908_119743264_119743349_119744254_119744344_119744433
ES_00054571	chr7	-	414	3	FSM	ENSMUSG00000030869.12	ENSMUST00000130904.2	397	3	-2	-15	-2	0	multi-exon	FALSE	canonical	3	4604	junction_1	161	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTTTTTCTTTTTCTGTG	NA	False	NA	2	True	AATAAA	-29	NA	121693007	121690040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_121690187_121690808_121690909_121692839
ES_00054573	chr7	-	3377	21	FSM	ENSMUSG00000030766.16	ENSMUST00000167309.8	3372	21	0	-5	0	1	multi-exon	FALSE	canonical	0	0	junction_20	68.2154491299442	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTAATTCTTAGAGGCAA	NA	False	NA	0	True	ATTAAA	-26	NA	122969101	122878492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_122879340_122884642_122884691_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ES_00054578	chr7	-	3086	10	NIC	ENSMUSG00000030733.11	novel	3366	10	NA	NA	12	1	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	86.4935593120617	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGGCTGATATTTGG	7895	False	NA	0	True	AATAAA	-29	NA	126074584	126066164	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074356
ES_00054580	chr7	-	3702	23	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	101	2	intron_retention	FALSE	canonical	3	143	junction_22	237.014331609778	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	7343	False	NA	-5	True	NA	NA	NA	126101171	126090884	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_126091388_126091620_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
ES_00054581	chr7	-	4192	22	NNC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	92	2	intron_retention	FALSE	canonical	3	56	junction_21	215.324666534377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	7334	False	NA	-5	True	NA	NA	NA	126101180	126090884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126100876
ES_00054584	chr7	-	2056	18	NNC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-107	181	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_17	50.8134521599864	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGCTATAGTTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	126184065	126171076	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183991
ES_00054588	chr7	-	716	6	ISM	ENSMUSG00000030689.16	ENSMUST00000206968.2	813	7	0	4781	0	0	5prime_fragment	FALSE	canonical	3	76	junction_5	344.956576977451	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTGGGACCAAGGCTA	9933	False	NA	NA	False	NA	NA	NA	126461533	126456847	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
ES_00054589	chr7	-	1546	2	FSM	ENSMUSG00000059981.13	ENSMUST00000130371.2	669	2	-38	-839	-38	10	multi-exon	FALSE	canonical	3	63	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCCTTTTTGTCTAAGG	8635	False	NA	5	True	AATAAA	-30	NA	126466466	126464839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_126466088_126466168
ES_00054595	chr7	-	2405	3	FSM	ENSMUSG00000045757.7	ENSMUST00000139118.2	2405	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAGAAAGAAACAA	8640	False	NA	NA	False	TATAAA	-19	NA	127005955	127002866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_127004832_127005337_127005452_127005629
ES_00054601	chr7	-	4028	17	NNC	ENSMUSG00000048170.15	novel	4237	16	NA	NA	0	-189	intron_retention	TRUE	non_canonical	0	0	junction_1	137.90825754827	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGATCAGATTGTAACCC	3862	False	NA	NA	False	NA	NA	NA	128342219	128298353	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_128298379_128298398_128300295_128301042_128301132_128303966_128304132_128305218_128305353_128306202_128306369_128308771_128308890_128310805_128310930_128311505_128311685_128314387_128314489_128316122_128316275_128317669_128317815_128322288_128322391_128325659_128325702_128325791_128325933_128326836_128326923_128341856
ES_00054610	chr7	-	2197	10	NIC	ENSMUSG00000030979.14	novel	1644	10	NA	NA	-358	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	18.4477908610847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGATCTGAGTATGGT	NA	False	NA	NA	False	NA	NA	NA	133312159	133288087	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133311457
ES_00054616	chr7	-	865	5	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_4	143.095029613191	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1975	False	NA	0	True	NA	NA	NA	139681850	139679382	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ES_00054619	chr7	-	1598	8	FSM	ENSMUSG00000025486.18	ENSMUST00000210296.2	1598	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	113.796811403986	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCCTGTCTCTTTGGGAT	NA	False	NA	-10	True	AATAAA	-18	NA	140462202	140443578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr7_-_140443997_140444887_140445098_140445578_140445740_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140462070
ES_00054625	chr7	-	1686	11	NNC	ENSMUSG00000038650.16	novel	1656	10	NA	NA	0	2689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.284029703735	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTACAACAACCAACTT	7992	False	NA	NA	False	NA	NA	NA	140752770	140737549	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr7_-_140737578_140740238_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ES_00054627	chr7	-	2104	11	NIC	ENSMUSG00000058886.10	novel	2135	12	NA	NA	-47	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	42.7906531850123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACCTGAATGTTGTCAAG	NA	False	NA	-8	True	AATAAA	-23	NA	140907650	140877098	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_140877530_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
ES_00054629	chr7	-	2540	10	NIC	ENSMUSG00000019082.19	novel	2546	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	12	junction_9	37.1154355431208	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	2754	False	NA	-19	True	AATAAA	-18	NA	141015258	141009661	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141015200
ES_00054638	chr7	-	1978	14	ISM	ENSMUSG00000031090.15	ENSMUST00000156638.8	2142	19	9909	-251	9870	-15	3prime_fragment	FALSE	canonical	1	3	junction_13	18.0833049291263	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTCTAAACACAAAATAAGC	NA	False	NA	NA	False	AATAAA	-10	NA	143366615	143349335	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366499
ES_00054640	chr7	+	294	1	Intergenic	novelGene_3570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAAGACAGCTACATT	3124	False	NA	NA	False	NA	NA	NA	3210216	3210510	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3210200_3210500
ES_00054641	chr7	+	316	1	Intergenic	novelGene_3571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGATTCTTTTATGAG	2431	False	NA	NA	False	NA	NA	NA	3223245	3223561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_3223200_3223600
ES_00054644	chr7	+	218	1	Intergenic	novelGene_3584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTGATGACCTGACTTT	4620	False	NA	NA	False	NA	NA	NA	6264942	6265160	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_6264900_6265200
ES_00054645	chr7	+	207	1	Intergenic	novelGene_3590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTACTGTTTCCAGGA	NA	False	NA	NA	False	AAAAAG	-3	NA	7140716	7140923	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_7140700_7140900
ES_00054646	chr7	+	201	1	Intergenic	novelGene_3602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATATAATTGGTCAGGT	NA	False	NA	NA	False	NA	NA	NA	12733879	12734080	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_12733900_12734100
ES_00054647	chr7	+	201	1	Intergenic	novelGene_3607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGTTTTATAAGACAAGG	1036	False	NA	NA	False	NA	NA	NA	16454063	16454264	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_16454100_16454300
ES_00054648	chr7	+	641	1	Intergenic	novelGene_3616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGCTCTTCTAACTCAAT	NA	False	NA	NA	False	NA	NA	NA	18434326	18434967	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_18434300_18435000
ES_00054649	chr7	+	224	1	Intergenic	novelGene_3624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGTGGTTGCTGGGAT	NA	False	NA	NA	False	NA	NA	NA	19439882	19440106	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19439900_19440100
ES_00054650	chr7	+	220	1	Intergenic	novelGene_3625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTTCCCCTGTGCACC	NA	False	NA	NA	False	AAAAAG	-26	NA	19487325	19487545	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_19487300_19487500
ES_00054651	chr7	+	205	1	Intergenic	novelGene_3633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGTTACATGGCATTA	NA	False	NA	NA	False	NA	NA	NA	24239655	24239860	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_24239700_24239900
ES_00054652	chr7	+	425	1	Intergenic	novelGene_3639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATTTAAAGTAAACTTTAA	NA	False	NA	NA	False	NA	NA	NA	26294862	26295287	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_26294900_26295300
ES_00054654	chr7	+	410	1	Intergenic	novelGene_3648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGATAGATGGATGGATG	NA	False	NA	NA	False	NA	NA	NA	27101475	27101885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27101500_27101900
ES_00054655	chr7	+	217	1	Intergenic	novelGene_3652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTAACTTGTGGCAGG	NA	False	NA	NA	False	AATAAA	-20	NA	27288545	27288762	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27288500_27288800
ES_00054656	chr7	+	200	1	Intergenic	novelGene_3657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTTAATTACTATG	NA	False	NA	NA	False	NA	NA	NA	27953342	27953542	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_27953300_27953500
ES_00054657	chr7	+	209	1	Intergenic	novelGene_3660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAAATTGAAACCAGCTT	4885	False	NA	NA	False	NA	NA	NA	28125413	28125622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28125400_28125600
ES_00054658	chr7	+	206	1	Intergenic	novelGene_3663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTGGGTTTTCAATGT	1525	False	NA	NA	False	NA	NA	NA	28189107	28189313	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28189100_28189300
ES_00054659	chr7	+	225	1	Intergenic	novelGene_3667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGTTCTAAGGGATCCA	182	False	NA	NA	False	NA	NA	NA	28838898	28839123	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_28838900_28839100
ES_00054661	chr7	+	212	1	Intergenic	novelGene_3682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATGACTTACAGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	31193368	31193580	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_31193400_31193600
ES_00054662	chr7	+	500	1	Intergenic	novelGene_3684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACTTAAAGAGGAAACACA	NA	False	NA	NA	False	NA	NA	NA	31226665	31227165	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_31226700_31227200
ES_00054664	chr7	+	205	1	Intergenic	novelGene_3688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCAATTTCAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	39176651	39176856	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_39176700_39176900
ES_00054665	chr7	+	582	1	Intergenic	novelGene_3700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTCAAGGGTATTT	NA	False	NA	NA	False	NA	NA	NA	42865554	42866136	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_42865600_42866100
ES_00054666	chr7	+	222	1	Intergenic	novelGene_3708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTCCAGGACAGCCAG	NA	False	NA	NA	False	NA	NA	NA	44369809	44370031	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_44369800_44370000
ES_00054667	chr7	+	205	1	Intergenic	novelGene_3721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTAATACATTTTATAAAT	NA	False	NA	NA	False	NA	NA	NA	46571001	46571206	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_46571000_46571200
ES_00054668	chr7	+	219	1	Intergenic	novelGene_3724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTATTTCTTATAAACAA	NA	False	NA	NA	False	NA	NA	NA	52287574	52287793	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_52287600_52287800
ES_00054669	chr7	+	455	1	Intergenic	novelGene_3734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTGAACATTTTTTCA	NA	False	NA	NA	False	AATAAA	-40	NA	63195162	63195617	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_63195200_63195600
ES_00054670	chr7	+	207	1	Intergenic	novelGene_3738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGACCTTTAAAAGACTATT	NA	False	NA	NA	False	NA	NA	NA	67884447	67884654	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_67884400_67884700
ES_00054671	chr7	+	200	1	Intergenic	novelGene_3743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATTGATATCCTTAGC	2252	False	NA	NA	False	NA	NA	NA	79325793	79325993	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_79325800_79326000
ES_00054672	chr7	+	203	1	Intergenic	novelGene_3750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATTGGCTATGATCAAGC	NA	False	NA	NA	False	NA	NA	NA	80483123	80483326	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_80483100_80483300
ES_00054673	chr7	+	204	1	Intergenic	novelGene_3751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACATCTTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	80484176	80484380	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_80484200_80484400
ES_00054674	chr7	+	472	1	Intergenic	novelGene_3759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTTGTAAATAGATTAGA	3499	False	NA	NA	False	NA	NA	NA	90063661	90064133	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_90063700_90064100
ES_00054675	chr7	+	377	1	Intergenic	novelGene_3760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTTATTAATTGGTA	4275	False	NA	NA	False	NA	NA	NA	90064437	90064814	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_90064400_90064800
ES_00054676	chr7	+	209	1	Intergenic	novelGene_3769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATAGAGGCCATCAC	NA	False	NA	NA	False	NA	NA	NA	99124661	99124870	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_99124700_99124900
ES_00054677	chr7	+	2283	1	Intergenic	novelGene_3777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGTGGAAGACTGACTTC	NA	False	NA	NA	False	NA	NA	NA	101591988	101594271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_101592000_101594300
ES_00054678	chr7	+	755	1	Intergenic	novelGene_3781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCCCCACTAGAACCCT	1340	False	NA	NA	False	NA	NA	NA	103872289	103873044	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_103872300_103873000
ES_00054680	chr7	+	204	1	Intergenic	novelGene_3792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTTTATTTTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	107200784	107200988	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_107200800_107201000
ES_00054681	chr7	+	253	1	Intergenic	novelGene_3807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGGTCTACAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	113855061	113855314	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr7_+_113855100_113855300
ES_00054692	chr8	+	5271	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_1	25.5526180280738	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	24	True	AATAAA	-14	NA	3443037	3506601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
ES_00054693	chr8	+	1985	2	FSM	ENSMUSG00000047264.9	ENSMUST00000061508.8	1999	2	14	0	14	0	multi-exon	FALSE	canonical	3	37	junction_1	0	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTTGTTACTTGCC	6330	False	NA	16	True	AGTAAA	-17	NA	3543151	3547208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3543310_3545381
ES_00054694	chr8	+	2080	14	FSM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	-15	0	-15	0	multi-exon	FALSE	canonical	3	278	junction_8	29.619280463035	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGTGGTCTAATTTGTAA	NA	False	NA	12	True	AATAAA	-13	NA	3550441	3565232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782_3564914_3565013
ES_00054695	chr8	+	621	4	FSM	ENSMUSG00000004567.17	ENSMUST00000159808.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_2	11.323525167642	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGGAAGAGTGGCCAGG	NA	False	NA	NA	False	TATAAA	-3	NA	3560666	3563022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3560690_3560813_3560916_3561687_3561811_3562649
ES_00054697	chr8	+	4496	35	FSM	ENSMUSG00000004565.16	ENSMUST00000111070.4	4496	35	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	73.9681498837968	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3565383	3594266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3565557_3566509_3566569_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ES_00054699	chr8	+	4444	35	FSM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	71.0843412012367	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3565424	3594267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3565557_3566509_3566569_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ES_00054701	chr8	+	4398	32	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	1438	0	0	0	3prime_fragment	FALSE	canonical	1	71	junction_27	44.5244031581209	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3566862	3594267	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ES_00054702	chr8	+	4412	33	NNC	ENSMUSG00000004565.16	novel	4444	35	NA	NA	3	31684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	58.3421682297633	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAACAACAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	3566865	3625951	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953_3594259_3625925
ES_00054703	chr8	+	4385	32	ISM	ENSMUSG00000004565.16	ENSMUST00000111070.4	4496	35	1501	2	11	-2	3prime_fragment	FALSE	canonical	1	71	junction_27	50.3064283424121	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGTGCTGTCTTTG	NA	False	NA	14	True	AATAAA	-18	NA	3566884	3594264	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ES_00054707	chr8	+	935	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	-1	-297	-1	297	multi-exon	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCAGCTGGGCCCATCCC	NA	False	NA	NA	False	NA	NA	NA	3617988	3623947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3618097_3623120
ES_00054708	chr8	+	965	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	-5	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617989	3628597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3618097_3623120_3623222_3627840
ES_00054709	chr8	+	716	4	NNC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	10.3387082795139	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTTATTTATTTATC	NA	False	NA	13	True	ATTAAA	-41	NA	3617992	3628586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3618097_3623120_3623222_3627840_3628046_3628280
ES_00054710	chr8	+	4328	17	FSM	ENSMUSG00000044433.17	ENSMUST00000057028.15	4450	17	122	0	122	0	multi-exon	TRUE	canonical	3	66	junction_7	31.8251448347058	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTACGTCTCGTGTT	6275	False	NA	53	True	NA	NA	NA	3637414	3659075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ES_00054711	chr8	+	3977	17	NIC	ENSMUSG00000044433.17	novel	3832	18	NA	NA	-137	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	49.3510622352751	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGAGACACGGTGTCTC	6517	False	NA	19	True	AATAAA	-15	NA	3637656	3659041	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_3637960_3647841_3648096_3648892_3648989_3650357_3650406_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ES_00054714	chr8	+	518	1	FSM	ENSMUSG00002076208.1	ENSMUST00020183046.1	327	1	-75	-116	-75	116	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGTCTAGGCACCCACAT	689	False	NA	NA	False	NA	NA	NA	3665453	3665971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3665500_3666000
ES_00054715	chr8	+	1212	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	-19	0	-16	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTACTCTTCATTGATTT	5568	False	NA	NA	False	AAAACA	-14	NA	3671531	3674235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ES_00054716	chr8	+	363	4	FSM	ENSMUSG00000087687.4	ENSMUST00000207389.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	322.072800603977	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5638	False	NA	10	True	NA	NA	NA	3671601	3673372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3671696_3672341_3672429_3672592_3672626_3673223
ES_00054717	chr8	+	2908	19	FSM	ENSMUSG00000004626.15	ENSMUST00000160708.8	2908	19	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_10	31.5352536413174	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCGGCTTCCTAGTAAC	4387	False	NA	NA	False	NA	NA	NA	3680954	3693644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
ES_00054718	chr8	+	706	7	FSM	ENSMUSG00000004626.15	ENSMUST00000162737.8	701	7	-5	0	0	0	multi-exon	FALSE	canonical	3	344	junction_6	23.5613855468835	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGAGGTCAGAGGTCA	4584	False	NA	NA	False	NA	NA	NA	3681151	3684735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474
ES_00054719	chr8	+	2137	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	-290	0	-75	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4312	False	NA	16	True	AATAAA	-22	NA	3680879	3692795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
ES_00054720	chr8	+	517	3	FSM	ENSMUSG00000004626.15	ENSMUST00000162832.2	517	3	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	NA	False	NA	16	True	AATAAA	-22	NA	3691611	3692795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3691821_3691897_3692056_3692645
ES_00054721	chr8	+	2390	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	156	0	-55	0	multi-exon	FALSE	canonical	3	198	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAATGTGTTTATGTA	NA	False	NA	NA	False	NA	NA	NA	3726454	3731255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3726604_3729014
ES_00054722	chr8	+	4411	1	FSM	ENSMUSG00000040236.5	ENSMUST00000207787.2	4411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTGGCTATTATTATTG	NA	False	NA	14	True	NA	NA	NA	3726509	3730920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3726500_3730900
ES_00054723	chr8	+	213	1	Intergenic	novelGene_3847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGGCTTTCTAATATTT	NA	False	NA	NA	False	NA	NA	NA	3841484	3841697	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_3841500_3841700
ES_00054724	chr8	+	2884	1	FSM	ENSMUSG00000097657.3	ENSMUST00000181162.3	2884	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	449	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGACCTCCCGGCCCC	NA	False	NA	NA	False	TTTAAA	-41	NA	4044625	4047509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4044600_4047500
ES_00054725	chr8	+	1243	1	FSM	ENSMUSG00000074482.6	ENSMUST00000159522.3	918	1	-188	-137	-188	137	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGCAGGAAGTAAGCCCT	2748	False	NA	NA	False	NA	NA	NA	4137469	4138712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4137500_4138700
ES_00054726	chr8	+	1554	11	FSM	ENSMUSG00000011832.17	ENSMUST00000239400.2	1542	11	-12	0	-12	0	multi-exon	FALSE	canonical	3	12	junction_10	5.9464274989274	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCTCCGGATGTAGT	NA	False	NA	NA	False	AATAAA	-24	NA	4216554	4243701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4243548
ES_00054727	chr8	+	3950	20	FSM	ENSMUSG00000011832.17	ENSMUST00000176149.9	3938	20	-12	0	-12	0	multi-exon	FALSE	canonical	3	9	junction_12	7.46144290294483	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGCCGAATAGAGAGCCA	NA	False	NA	7	True	AATAAA	-22	NA	4216554	4258051	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4250867_4250922_4251933_4251967_4252935_4253077_4253513_4253643_4255321_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
ES_00054729	chr8	+	3498	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	0	-1	0	0	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288739	4297897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
ES_00054730	chr8	+	3546	12	FSM	ENSMUSG00000002948.20	ENSMUST00000062686.11	3525	12	-21	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	114.000217485656	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288739	4297897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4289034_4290687_4290736_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
ES_00054733	chr8	+	3455	12	NNC	ENSMUSG00000002948.20	novel	1578	12	NA	NA	0	68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	90.5489228981578	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAGGGATGACATTCAT	NA	False	NA	88	True	NA	NA	NA	4288828	4297965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4296987_4297008
ES_00054738	chr8	+	1538	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	-2	0	-2	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGATTCCCCCTTTGAC	NA	False	NA	16	True	AATAAA	-16	NA	4303077	4306220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
ES_00054739	chr8	+	1867	3	FSM	ENSMUSG00000023235.15	ENSMUST00000153254.3	362	3	8	-1513	8	5	multi-exon	FALSE	canonical	3	5	junction_2	7	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGTTTGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4375248	4384812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4375289_4377756_4377894_4383122
ES_00054740	chr8	+	790	4	ISM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	4298	74	4298	-52	3prime_fragment	FALSE	canonical	3	11	junction_2	4.78423336480244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTACACATGTGAAATGG	NA	False	NA	NA	False	NA	NA	NA	4403885	4409946	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_4404001_4404090_4404204_4407592_4407690_4409481
ES_00054741	chr8	+	408	1	FSM	ENSMUSG00000109241.2	ENSMUST00000208558.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2837	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGGTGTGCATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	4441725	4442133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4441700_4442100
ES_00054742	chr8	+	9369	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	98	8	98	-8	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAAAGTTGAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4543296	4581672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ES_00054743	chr8	+	4718	5	NNC	ENSMUSG00000058748.10	novel	2364	4	NA	NA	-132	2104	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	75.6405975650642	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTATGGGGATGTGTTC	NA	False	NA	NA	False	AATAAA	-31	NA	4663034	4682335	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_4663279_4674903_4675022_4675839_4675967_4676163_4676225_4678167
ES_00054744	chr8	+	2364	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAATATATAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	4663166	4680231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
ES_00054745	chr8	+	1116	1	FSM	ENSMUSG00000109489.2	ENSMUST00000208382.2	1392	1	224	52	224	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACCCAGAGAGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	4691689	4692805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4691700_4692800
ES_00054746	chr8	+	447	1	FSM	ENSMUSG00000109448.2	ENSMUST00000208203.2	414	1	-13	-20	-13	20	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGGGACTGTGAGCAGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4702050	4702497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4702000_4702500
ES_00054747	chr8	+	353	1	FSM	ENSMUSG00000109055.2	ENSMUST00000207279.2	606	1	-104	357	-104	-357	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCAAGAGGCCTCCTTC	NA	False	NA	NA	False	AAAAAG	-19	NA	4763102	4763455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4763100_4763500
ES_00054749	chr8	+	404	1	FSM	ENSMUSG00000062152.5	ENSMUST00000080279.5	483	1	52	27	52	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATTCCATACGAATTCAT	NA	False	NA	NA	False	NA	NA	NA	4911220	4911624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4911200_4911600
ES_00054750	chr8	+	1804	1	FSM	ENSMUSG00000043192.5	ENSMUST00000051687.5	1432	1	-75	-297	-75	297	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTCAAGAAGACCTCTG	NA	False	NA	69	True	TTTAAA	-15	NA	5689504	5691308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_5689500_5691300
ES_00054751	chr8	+	1071	1	FSM	ENSMUSG00000108852.2	ENSMUST00000208436.2	1062	1	26	-35	26	35	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATTAAAGTGTTACTGA	NA	False	NA	NA	False	NA	NA	NA	7090182	7091253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_7090200_7091300
ES_00054752	chr8	+	5078	2	FSM	ENSMUSG00000040396.13	ENSMUST00000048216.6	5074	2	-4	0	-4	0	multi-exon	FALSE	canonical	3	144	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAGTCTTATTCTAAT	NA	False	NA	19	True	AATAAA	-20	NA	10027712	10042155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_10028020_10037384
ES_00054753	chr8	+	5185	3	FSM	ENSMUSG00000040396.13	ENSMUST00000139793.8	5191	3	6	0	-4	0	multi-exon	FALSE	canonical	3	35	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAGTCTTATTCTAAT	NA	False	NA	19	True	AATAAA	-20	NA	10027712	10042155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_10028020_10032863_10032971_10037384
ES_00054754	chr8	+	6459	48	FSM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	-9	0	-9	0	multi-exon	TRUE	canonical	3	15	junction_4	6.83737233737166	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTTTTCTGTCCCCCGA	8471	False	NA	10	True	AATAAA	-20	NA	11362795	11499287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11363115_11363418_11363508_11363629_11363685_11404276_11404358_11448661_11448797_11449703_11449749_11451147_11451265_11452162_11452235_11452983_11453020_11453341_11453405_11454963_11455000_11456812_11456855_11458051_11458145_11458881_11458918_11459421_11459473_11460054_11460100_11463978_11464033_11464741_11464809_11465363_11465475_11465925_11466076_11470576_11470670_11471167_11471323_11473551_11473625_11473716_11473824_11475338_11475541_11475928_11475989_11477006_11477064_11477552_11477661_11479306_11479529_11481239_11481402_11483653_11483825_11484627_11484772_11487586_11487710_11487923_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ES_00054755	chr8	+	1311	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	-4	0	-4	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547501	11563287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ES_00054756	chr8	+	1360	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	-1	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547566	11563287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ES_00054757	chr8	+	2830	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178817.8	2830	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	84.6699474429977	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	11547566	11564960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ES_00054758	chr8	+	749	7	FSM	ENSMUSG00000031505.12	ENSMUST00000180269.2	749	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	76.0343489629669	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGGACAGCAACGATCTC	NA	False	NA	NA	False	NA	NA	NA	11547632	11560236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559558_11560226
ES_00054760	chr8	+	2815	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	-1	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	16	True	NA	NA	NA	11606064	11613251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11607046_11611417
ES_00054761	chr8	+	1978	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	-7	0	-7	0	multi-exon	FALSE	canonical	3	111	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11608421	11613250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11608567_11611417
ES_00054762	chr8	+	431	5	FSM	ENSMUSG00000031511.17	ENSMUST00000210104.2	574	5	143	0	143	0	multi-exon	FALSE	canonical	0	0	junction_1	47.1672555911408	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGATTCCCTGGGATCC	NA	False	NA	NA	False	GATAAA	-3	NA	11777863	11832581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11777884_11778234_11778417_11808430_11808518_11831154_11831240_11832524
ES_00054763	chr8	+	4641	21	NIC	ENSMUSG00000031511.17	novel	4628	21	NA	NA	-33	-6	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	19.8655480669424	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACGTGTTGCTTCATC	NA	False	NA	11	True	ATTAAA	-21	NA	11778143	11885213	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_11778417_11808430_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
ES_00054764	chr8	+	4469	20	FSM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	-18	0	-18	0	multi-exon	FALSE	canonical	3	61	junction_7	14.3717944757881	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTGCTTCATCTTCCTT	9610	False	NA	17	True	ATTAAA	-27	NA	11808335	11885219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
ES_00054765	chr8	+	3784	1	FSM	ENSMUSG00000096014.2	ENSMUST00000180353.2	4832	1	328	720	328	-720	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATATTACAAGTGACACG	6253	False	NA	NA	False	TATAAA	-3	NA	12445622	12449406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_12445600_12449400
ES_00054766	chr8	+	7565	30	NIC	ENSMUSG00000031441.16	novel	7549	30	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_29	16.6168259924755	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGGACTGAGAGCCCAGT	NA	False	NA	28	True	ATTAAA	-22	NA	12806917	12918667	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12911639_12911725_12914919
ES_00054767	chr8	+	7584	30	FSM	ENSMUSG00000031441.16	ENSMUST00000033818.10	7549	30	-96	61	-96	0	multi-exon	FALSE	canonical	3	17	junction_29	16.4441186100344	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGGACTGAGAGCCCAGT	NA	False	NA	28	True	ATTAAA	-22	NA	12806917	12918667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12913758_12913863_12914919
ES_00054768	chr8	+	3920	29	NIC	ENSMUSG00000031441.16	novel	7443	29	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_28	12.9998037661798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGATGTGCTGCTTT	NA	False	NA	10	True	AATAAA	-17	NA	12807023	12912205	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12911911
ES_00054772	chr8	+	3947	30	FSM	ENSMUSG00000031442.22	ENSMUST00000095456.10	3926	30	-21	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	5.78098074781942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCGTGCAGTAGACCAG	7883	False	NA	NA	False	NA	NA	NA	12923805	13069053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_12924017_12929881_12930151_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ES_00054778	chr8	+	1007	1	FSM	ENSMUSG00000091784.3	ENSMUST00000166415.3	922	1	173	-258	173	258	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAAACTCTATAGGTGG	NA	False	NA	NA	False	NA	NA	NA	13136681	13137688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13136700_13137700
ES_00054779	chr8	+	3728	20	FSM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	0	0	0	0	multi-exon	TRUE	canonical	2	216	junction_3	44.2424070515772	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	26	True	AATAAA	-23	NA	13155620	13197940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
ES_00054780	chr8	+	2006	3	FSM	ENSMUSG00000031446.15	ENSMUST00000135371.2	2006	3	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	20.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAATTAGTCTGGCAAGTA	NA	False	NA	NA	False	TTTAAA	-4	NA	13155739	13167195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13155904_13156193_13156310_13165469
ES_00054781	chr8	+	205	1	Intergenic	novelGene_3867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCAGTCAGTGCTCTT	1039	False	NA	NA	False	NA	NA	NA	13201997	13202202	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_13202000_13202200
ES_00054782	chr8	+	2229	9	FSM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	0	0	0	0	multi-exon	FALSE	canonical	3	2416	junction_1	214.397848636594	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACGTGTCCTTCTGTGAC	8202	False	NA	21	True	AATAAA	-22	NA	13209160	13225338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13209435_13215848_13215968_13217157_13217378_13217806_13217966_13221204_13221384_13222540_13222661_13223626_13223694_13223779_13223951_13224418
ES_00054783	chr8	+	794	3	FSM	ENSMUSG00000099338.2	ENSMUST00000187595.2	856	3	0	62	0	-57	multi-exon	FALSE	canonical	1	1	junction_2	2.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACAACAGGGTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	13250819	13257645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13251294_13251687_13251726_13257363
ES_00054784	chr8	+	2899	13	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	97	219	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_7	12.8344155387856	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGAGCTGAACCTAGGGG	NA	False	NA	NA	False	NA	NA	NA	13338334	13371615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358348_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
ES_00054786	chr8	+	2658	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	-153	6	-153	0	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	1950	False	NA	88	True	AATAAA	-18	NA	13388597	13428442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054787	chr8	+	2957	12	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	274.517427828942	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	1991	False	NA	88	True	AATAAA	-18	NA	13388638	13428442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13389147_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054788	chr8	+	2664	11	NIC	ENSMUSG00000038482.12	novel	2421	11	NA	NA	-112	0	combination_of_known_junctions	FALSE	canonical	3	161	junction_2	301.20167662216	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	1991	False	NA	88	True	AATAAA	-18	NA	13388638	13428442	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_13388921_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054789	chr8	+	2890	11	NNC	ENSMUSG00000038482.12	novel	2421	11	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	365.657613075401	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	1991	False	NA	88	True	AATAAA	-18	NA	13388638	13428442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13389147_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054790	chr8	+	2438	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	-17	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2103	False	NA	88	True	AATAAA	-18	NA	13388750	13428442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054791	chr8	+	2595	13	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_5	371.107314518171	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	2115	False	NA	87	True	AATAAA	-17	NA	13388762	13428441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420171_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054792	chr8	+	2549	12	NIC	ENSMUSG00000038482.12	novel	2787	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	464	junction_1	173.205128471779	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2173	False	NA	88	True	AATAAA	-18	NA	13388820	13428442	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00054795	chr8	+	2322	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	-21	0	-21	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13807654	13831938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
ES_00054797	chr8	+	2049	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	8	0	8	0	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCATCTTGTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	13835622	13849193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ES_00054798	chr8	+	3979	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	34	0	-29	0	multi-exon	FALSE	canonical	3	209	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919674	13931639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13919812_13927797
ES_00054799	chr8	+	335	1	FSM	ENSMUSG00000068631.9	ENSMUST00000084055.9	319	1	-16	0	-16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGAGATGTCTTGCAAC	NA	False	NA	NA	False	NA	NA	NA	13946294	13946629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13946300_13946600
ES_00054800	chr8	+	2053	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	-41	0	-41	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957761	13990522	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
ES_00054801	chr8	+	2001	10	NIC	ENSMUSG00000038365.9	novel	2035	11	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_7	29.6514734295483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATTTTTCTGCAACAA	NA	False	NA	13	True	AATAAA	-19	NA	13957809	13990521	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981184_13981365_13985145_13985290_13989562
ES_00054802	chr8	+	2130	1	FSM	ENSMUSG00000074461.3	ENSMUST00000098916.3	2130	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGACTTGCCTTGGTCA	4307	False	NA	NA	False	NA	NA	NA	14140460	14142590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_14140500_14142600
ES_00054803	chr8	+	6135	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	722	0	-171	0	multi-exon	FALSE	canonical	3	162	junction_1	24.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTGCCATATATATGT	NA	False	NA	6	True	NA	NA	NA	14938832	14951720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_14939119_14944571_14945231_14946530
ES_00054804	chr8	+	6233	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-137	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTGCCATATATATGT	NA	False	NA	6	True	NA	NA	NA	14938866	14951720	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
ES_00054805	chr8	+	6451	5	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-171	214	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	81.9832299924808	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGTTGTGACTTCTC	NA	False	NA	NA	False	AAGAAA	-42	NA	14938832	14951934	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530_14949493_14949522
ES_00054806	chr8	+	5536	29	FSM	ENSMUSG00000071176.11	ENSMUST00000084207.12	5528	29	-15	7	-15	4	multi-exon	TRUE	canonical	3	14	junction_9	8.00541908296359	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTATTTCAAGTTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	14961647	15051078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14992609_14992727_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
ES_00054807	chr8	+	5353	28	FSM	ENSMUSG00000071176.11	ENSMUST00000110800.9	5336	28	-21	4	0	-1	multi-exon	FALSE	canonical	3	16	junction_8	7.20558387346064	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTTCAAGTTGCTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	14961716	15051081	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
ES_00054808	chr8	+	4662	14	FSM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	12.6528524276628	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGCAATAATTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	18645146	18853205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
ES_00054809	chr8	+	2067	8	FSM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	14.4391757354209	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTGACCTGTATACC	NA	False	NA	NA	False	ATTAAA	-22	NA	18645597	18682917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531
ES_00054810	chr8	+	10729	8	FSM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	-16	66	-16	-66	multi-exon	FALSE	canonical	3	636	junction_4	34.1778063804509	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATAGCAATCATGTAATG	NA	False	NA	NA	False	NA	NA	NA	18896276	18941311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
ES_00054811	chr8	+	591	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTCGTGTCTGTAC	7117	False	NA	NA	False	AAGAAA	-4	NA	19542951	19543542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_19543000_19543500
ES_00054812	chr8	+	3733	3	ISM	ENSMUSG00000087153.9	ENSMUST00000155660.9	862	5	5227	802	5227	-802	internal_fragment	FALSE	canonical	3	76	junction_1	220	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATAAAGGGAGTTGACT	8124	False	NA	NA	False	TATAAA	-36	NA	19737691	19746950	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_19737921_19741536_19741657_19743566
ES_00054813	chr8	+	229	1	Intergenic	novelGene_3887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACTGTGAGTTTATAGAA	NA	False	NA	NA	False	AAAACA	-38	NA	19755241	19755470	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_19755200_19755500
ES_00054814	chr8	+	1744	5	Fusion	ENSMUSG00000110669.2_ENSMUSG00000071796.14	novel	936	6	NA	NA	-377	-3464	multi-exon	FALSE	canonical	3	494	junction_2	319.804139279028	68	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAACGTTCCTCTGTCTC	NA	False	NA	NA	False	CATAAA	-12	NA	19834384	20169530	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19834867_20157802_20158176_20163109_20163409_20167037_20167158_20169060
ES_00054815	chr8	+	4991	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	0	214	intron_retention	FALSE	non_canonical	0	0	junction_5	531.296677949336	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCTTCCTCACTCTCAG	NA	False	NA	NA	False	NA	NA	NA	19834761	20046102	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20045923_20045952
ES_00054817	chr8	+	8317	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	2	3257	intron_retention	FALSE	non_canonical	0	0	junction_5	534.914423062232	232	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATATATATATATATCAG	NA	False	NA	NA	False	NA	NA	NA	20016467	20049145	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20045923_20045952
ES_00054818	chr8	+	5111	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-2	214	intron_retention	FALSE	non_canonical	0	0	junction_5	519.250844968017	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCTTCCTCACTCTCAG	NA	False	NA	NA	False	NA	NA	NA	20016463	20046102	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20045923_20045952
ES_00054820	chr8	+	1367	6	NNC	ENSMUSG00000071796.14	novel	936	6	NA	NA	-23851	-3817	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	509.929642205667	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGATCACTCTGACTGAT	NA	False	NA	NA	False	NA	NA	NA	20119996	20169177	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20120262_20143455_20143649_20157802_20158176_20163109_20163409_20167037_20167158_20169060
ES_00054821	chr8	+	1240	6	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-23809	-3735	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	509.882888514608	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20120038	20169259	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20120262_20143455_20143649_20157802_20158009_20163109_20163409_20167037_20167158_20169060
ES_00054822	chr8	+	1001	1	Intergenic	novelGene_3891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCAGAACGGTTTCCGT	3633	False	NA	NA	False	NA	NA	NA	20125995	20126996	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_20126000_20127000
ES_00054823	chr8	+	4467	4	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-65	-2018	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_3	203.810369379643	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGCCTTTTGTGACTGGT	7123	False	NA	NA	False	NA	NA	NA	20143782	20176649	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20143957_20157802_20158176_20163109_20163405_20173024
ES_00054824	chr8	+	4659	5	FSM	ENSMUSG00000071796.14	ENSMUST00000153748.2	4659	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	481.210452920549	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAGTAGATGTCTT	7188	False	NA	NA	False	AATAAA	-5	NA	20143847	20172994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_20143957_20157802_20158000_20163109_20163409_20167037_20167158_20169060
ES_00054825	chr8	+	1028	4	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21014	3971	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	4.49691252107735	116	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTCTGTTAACAACA	5375	False	NA	NA	False	NA	NA	NA	20555685	20588308	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008
ES_00054826	chr8	+	362	1	Intergenic	novelGene_3892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAATAACCAAACTCTG	1134	False	NA	NA	False	NA	NA	NA	20581270	20581632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_20581300_20581600
ES_00054827	chr8	+	3764	2	Genic_Genomic	ENSMUSG00000096401.3	novel	930	5	NA	NA	-130372	1193	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCACAAGGTAGTACAAAGT	1594	False	NA	NA	False	NA	NA	NA	20581730	20728459	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_+_20582117_20725081
ES_00054828	chr8	+	5040	6	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-121	-29	intron_retention	FALSE	non_canonical	1	9	junction_1	459.16158375892	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACACTATGTTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	20697863	20727237	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698134_20706293_20706355_20711891_20712098_20717197_20717493_20721120_20721241_20723149
ES_00054829	chr8	+	6313	5	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-121	1178	intron_retention	FALSE	canonical	3	200	junction_2	399.990234255788	204	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTCAC	NA	False	NA	NA	False	NA	NA	NA	20697863	20728444	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
ES_00054830	chr8	+	2090	4	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-121	1178	multi-exon	FALSE	canonical	3	112	junction_3	226.010324247957	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTCAC	NA	False	NA	NA	False	NA	NA	NA	20697863	20728444	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717493_20727081
ES_00054831	chr8	+	6038	5	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	0	1191	intron_retention	FALSE	canonical	3	434	junction_2	317.198183317622	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTCACAAGGTAGTACAAA	NA	False	NA	NA	False	NA	NA	NA	20697984	20728457	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
ES_00054832	chr8	+	8159	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000095403.9	novel	955	5	NA	NA	0	3171	intron_retention	FALSE	canonical	3	141	junction_2	195.122397484246	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAATCTTTAATATAT	NA	False	NA	NA	False	NA	NA	NA	20697984	21125958	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698090_21107448_21107822_21112754_21113054_21116684_21116805_21118696
ES_00054833	chr8	+	5321	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000095403.9	novel	955	5	NA	NA	0	7360	intron_retention	FALSE	canonical	3	18	junction_5	206.524574808907	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACCAGCTCTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	20697984	21130147	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698090_21107448_21107655_21112754_21113054_21116684_21116805_21118696_21122877_21129736
ES_00054834	chr8	+	205	2	Antisense	novelGene_ENSMUSG00000110574.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGTAAGGTTTTTATAG	NA	False	NA	NA	False	NA	NA	NA	21079546	21162217	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_21079576_21162041
ES_00054835	chr8	+	3998	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17372	3130	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	114.257992669611	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTGACAGACAGTATACT	5840	False	NA	NA	False	NA	NA	NA	21090240	21125917	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21122628
ES_00054836	chr8	+	4976	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	-20	4	-20	-4	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACCTGCTGGCTCCCTTT	NA	False	NA	1	True	NA	NA	NA	22550716	22561639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
ES_00054837	chr8	+	4970	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-6	0	intron_retention	FALSE	canonical	3	51	junction_2	7.11805216802087	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	5	True	NA	NA	NA	22550730	22561643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_22550787_22551901_22552137_22555015_22555948_22557896
ES_00054838	chr8	+	5126	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-6	0	intron_retention	FALSE	canonical	3	5	junction_1	24.9443825784929	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	5	True	NA	NA	NA	22550730	22561643	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_22550947_22551901_22552133_22555015_22555948_22557896
ES_00054839	chr8	+	3593	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	-19	0	-19	0	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAATTTTTCTGTTTT	NA	False	NA	9	True	GATAAA	-22	NA	22682805	22710859	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ES_00054840	chr8	+	782	1	FSM	ENSMUSG00000110129.2	ENSMUST00000211758.2	853	1	61	10	61	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGATTGGTCTCCGTTT	NA	False	NA	NA	False	AAAAAG	-38	NA	22900533	22901315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22900500_22901300
ES_00054841	chr8	+	1528	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	-13	0	-13	0	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTTGTGTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22901363	22919681	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ES_00054842	chr8	+	3566	11	FSM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_6	45.0493063209635	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTTCTGACGTCTTTTT	NA	False	NA	15	True	AATAAA	-20	NA	22966803	23059628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
ES_00054843	chr8	+	2311	2	FSM	ENSMUSG00000097042.3	ENSMUST00000180411.3	2311	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTCAGTTGTTTCTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	22970306	22973348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22972071_22972801
ES_00054844	chr8	+	2502	1	FSM	ENSMUSG00000037656.10	ENSMUST00000210388.2	2522	1	25	-5	25	5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6849	False	NA	NA	False	NA	NA	NA	23028819	23031321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_23028800_23031300
ES_00054845	chr8	+	206	1	Intergenic	novelGene_3897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAATGGTCAAAAT	8333	False	NA	NA	False	NA	NA	NA	23093916	23094122	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_23093900_23094100
ES_00054846	chr8	+	9202	18	FSM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	-89	0	-75	0	multi-exon	FALSE	canonical	2	9	junction_7	4.68894009020697	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTGCCTGTGGAA	NA	False	NA	9	True	AATAAA	-21	NA	23349475	23433275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_23349649_23351532_23351619_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130_23422731_23425495_23425815_23428004
ES_00054848	chr8	+	2099	3	FSM	ENSMUSG00000063672.8	ENSMUST00000071588.8	2238	3	120	19	120	-19	multi-exon	FALSE	canonical	1	1	junction_2	1.5	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAGAAGCAGAAACCA	NA	False	NA	NA	False	AATAAA	-25	NA	23643404	23648945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_23643986_23646216_23646387_23647597
ES_00054849	chr8	+	4619	4	NNC	ENSMUSG00000031548.8	novel	4372	3	NA	NA	-281	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	602.571710808487	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACAGCGTGAGTTGTGAT	NA	False	NA	20	True	ACTAAA	-13	NA	23901236	23939644	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_23902345_23907345_23907424_23936181_23937024_23937053
ES_00054850	chr8	+	4371	3	FSM	ENSMUSG00000031548.8	ENSMUST00000033952.8	4372	3	0	1	0	-1	multi-exon	FALSE	canonical	3	1172	junction_2	95.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCGTGAGTTGTGATTGA	NA	False	NA	23	True	ACTAAA	-16	NA	23901517	23939647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_23902345_23907345_23907424_23936181
ES_00054851	chr8	+	4340	4	NNC	ENSMUSG00000031548.8	novel	4372	3	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	602.571710808487	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACAGCGTGAGTTGTGAT	NA	False	NA	20	True	ACTAAA	-13	NA	23901517	23939644	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_23902345_23907345_23907424_23936181_23937024_23937051
ES_00054852	chr8	+	1285	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGAGTATTTC	NA	False	NA	14	True	AATAAA	-14	NA	25507222	25513276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
ES_00054853	chr8	+	526	1	FSM	ENSMUSG00000074412.5	ENSMUST00000098864.5	432	1	-30	-64	-30	64	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAATCCTACATT	NA	False	NA	NA	False	AATAAA	-37	NA	25944258	25944784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_25944300_25944800
ES_00054854	chr8	+	5023	18	FSM	ENSMUSG00000031565.19	ENSMUST00000084027.13	5025	18	-2	4	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_9	63.8572694769507	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTCTACTTGACTCAC	NA	False	NA	77	True	NA	NA	NA	26008772	26065730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ES_00054855	chr8	+	4973	18	NIC	ENSMUSG00000031565.19	novel	4046	18	NA	NA	-18	-54	combination_of_known_junctions	FALSE	canonical	3	61	junction_9	55.8011174250333	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTGGTTTTTTTTTTTTT	NA	False	NA	23	True	AATGAA	-37	NA	26008756	26065676	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ES_00054856	chr8	+	4034	18	NIC	ENSMUSG00000031565.19	novel	5025	18	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	61	junction_9	52.4816659369305	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCATTTTTATCCTGG	NA	False	NA	7	True	AATAAA	-10	NA	26008818	26064793	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ES_00054858	chr8	+	3386	9	FSM	ENSMUSG00000031565.19	ENSMUST00000120106.9	3386	9	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	21.8174242292714	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATCCTGGGCGTGTG	2657	False	NA	14	True	AATAAA	-17	NA	26056865	26064800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ES_00054859	chr8	+	2196	1	FSM	ENSMUSG00000043794.9	ENSMUST00000210582.2	2196	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCCTCTCCTTGTTTTC	4413	False	NA	NA	False	AATAAA	-22	NA	26087027	26089223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26087000_26089200
ES_00054860	chr8	+	2523	6	FSM	ENSMUSG00000054823.18	ENSMUST00000143445.2	2416	6	-105	-2	-70	2	multi-exon	FALSE	canonical	3	91	junction_5	11.4960862905599	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTGCCTGCTGATTTG	9615	False	NA	NA	False	ATTAAA	-15	NA	26092229	26153617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756
ES_00054861	chr8	+	3888	8	FSM	ENSMUSG00000054823.18	ENSMUST00000136107.9	3818	8	-70	0	-70	0	multi-exon	FALSE	canonical	3	91	junction_5	11.0435131943358	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTTACATATTTACAAAAT	9615	False	NA	NA	False	AATAAA	-26	NA	26092229	26164932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349
ES_00054862	chr8	+	3685	10	FSM	ENSMUSG00000054823.18	ENSMUST00000146919.8	3652	10	-55	22	-55	0	multi-exon	FALSE	canonical	3	19	junction_9	30.118285328204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATTCCACACT	9630	False	NA	-7	True	NA	NA	NA	26092244	26167966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26166718
ES_00054864	chr8	+	10156	24	FSM	ENSMUSG00000054823.18	ENSMUST00000142395.8	10105	24	-51	0	-51	0	multi-exon	FALSE	canonical	3	27	junction_15	30.6634885068579	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATGGGCTGGTTCTTTA	9634	False	NA	19	True	AATAAA	-23	NA	26092248	26209694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26168731_26168863_26169881_26170011_26170663_26170791_26172514_26172713_26173167_26173339_26181041_26181189_26184715_26184873_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
ES_00054866	chr8	+	1493	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	-10	0	-10	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210053	26214914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ES_00054867	chr8	+	2102	6	FSM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	-3	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.0545674132471	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210087	26214914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
ES_00054869	chr8	+	2662	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	1	0	1	0	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAGAGAAGACACAT	8441	False	NA	NA	False	NA	NA	NA	26275316	26294003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
ES_00054870	chr8	+	205	2	Antisense	novelGene_ENSMUSG00000110120.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTTTCTTCTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	26541604	26621810	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_26541636_26621636
ES_00054871	chr8	+	4014	8	FSM	ENSMUSG00000013878.19	ENSMUST00000014022.15	3929	8	-85	0	-85	0	multi-exon	FALSE	canonical	3	49	junction_2	13.0243100800474	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTAATGTGTTATGTTT	NA	False	NA	7	True	AATAAA	-17	NA	26609310	26633899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
ES_00054872	chr8	+	3943	7	FSM	ENSMUSG00000013878.19	ENSMUST00000124757.8	1297	7	-97	-2549	-85	3	multi-exon	FALSE	canonical	2	7	junction_5	26.5685695679856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTTATGTTTCTA	NA	False	NA	10	True	AATAAA	-20	NA	26609310	26633902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26629007_26629119_26630838
ES_00054875	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	13	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648168	26654179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26648550_26650802_26650999_26652461
ES_00054876	chr8	+	696	8	FSM	ENSMUSG00000031483.9	ENSMUST00000211043.2	686	8	-10	0	-2	0	multi-exon	FALSE	canonical	2	7	junction_1	148.646958823068	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGGGCTGGTTATCCA	NA	False	NA	NA	False	NA	NA	NA	27513824	27521778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_27513935_27514861_27514956_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725
ES_00054877	chr8	+	4840	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	-2	0	-2	0	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTTTTCATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	27513824	27530356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ES_00054879	chr8	+	5778	5	FSM	ENSMUSG00000031485.16	ENSMUST00000209525.2	5767	5	-11	0	-5	0	multi-exon	FALSE	canonical	3	235	junction_4	15.0416089564913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGTGTGATGAGTGAAT	NA	False	NA	13	True	ATTAAA	-15	NA	27532577	27544595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201
ES_00054880	chr8	+	3608	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532577	27546160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ES_00054884	chr8	+	1817	5	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	4	39576	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	7346.9774397367	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATTGGTTCCCAGGGGT	NA	False	NA	NA	False	ATTAAA	-25	NA	27750360	27806278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_27750579_27763350_27763531_27765107_27765846_27766022_27766659_27806233
ES_00054886	chr8	+	901	4	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	4	171939	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6932.90628492522	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCCCGTGTTCTCGTGGC	NA	False	NA	NA	False	NA	NA	NA	27750360	27938641	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_27750579_27763350_27763531_27765107_27765582_27938612
ES_00054887	chr8	+	1780	6	FSM	ENSMUSG00000039328.12	ENSMUST00000217278.2	1726	6	-20	-34	-10	34	multi-exon	FALSE	canonical	2	5	junction_2	3.55527776692624	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTGGCTTGTGGTTGT	NA	False	NA	11	True	ATTAAA	-25	NA	31601837	31619695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618279_31618363_31618606
ES_00054888	chr8	+	2937	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	11	185	-1	-185	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCTTAACATCTAGGTT	NA	False	NA	NA	False	NA	NA	NA	31640353	31650897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
ES_00054889	chr8	+	4872	8	FSM	ENSMUSG00000031577.11	ENSMUST00000098842.3	5039	8	-6	173	-5	-173	multi-exon	FALSE	canonical	2	10	junction_7	52.8432414152019	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCATACTCTTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	31640337	31654557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909_31650078_31651818
ES_00054890	chr8	+	2101	5	ISM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	38	4791	13	-4791	5prime_fragment	FALSE	canonical	3	141	junction_1	15.352117117844	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCTCAAGAAAAAGATTAT	NA	False	NA	NA	False	NA	NA	NA	31640380	31646291	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805
ES_00054894	chr8	+	1969	3	NNC	ENSMUSG00000049184.7	novel	1795	2	NA	NA	-444	-4	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	3	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCATTAGTTTGGATTCT	NA	False	NA	18	True	AATAAA	-12	NA	33875908	33907491	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_33876092_33876357_33877237_33906584
ES_00054897	chr8	+	2007	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	-124	-414	-124	414	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAATACTTAGAACTGTG	8741	False	NA	75	True	ATTAAA	-28	NA	34089528	34109883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
ES_00054903	chr8	+	1622	2	NNC	ENSMUSG00000071113.5	novel	1836	3	NA	NA	5039	-13	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTTATAAAAGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	34587222	34592323	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_34587430_34590908
ES_00054907	chr8	+	663	1	Genic_Genomic	ENSMUSG00000054247.7	novel	NA	NA	NA	NA	-3	-498	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCACTTCCGGATTCTG	NA	False	NA	NA	False	NA	NA	NA	35432202	35432865	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_+_35432200_35432900
ES_00054909	chr8	+	4264	2	FSM	ENSMUSG00000046794.10	ENSMUST00000070481.8	4221	2	-37	-6	-35	6	multi-exon	FALSE	canonical	2	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCCTTCTATTTTTAGC	NA	False	NA	NA	False	NA	NA	NA	35842857	35855299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_35842960_35851137
ES_00054911	chr8	+	4934	6	FSM	ENSMUSG00000050271.13	ENSMUST00000110492.2	4780	6	-154	0	-154	0	multi-exon	FALSE	canonical	3	27	junction_2	3.13687742827162	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTATTGCGT	NA	False	NA	10	True	AATAAA	-16	NA	36561827	36614941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_36562143_36566723_36567142_36569709_36571506_36596157_36596316_36606505_36607267_36613455
ES_00054913	chr8	+	2560	11	FSM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	-6	257	-6	-257	multi-exon	FALSE	canonical	0	0	junction_10	62.7792959501777	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAATAAACTCAGCATTGA	NA	False	NA	NA	False	ACTAAA	-29	NA	39472992	39619110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39614047_39614112_39617866
ES_00054914	chr8	+	2226	15	FSM	ENSMUSG00000039478.16	ENSMUST00000068999.14	2219	15	-7	0	-7	0	multi-exon	FALSE	canonical	1	2	junction_7	1.75691055374984	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTGAGTGGATCCAAA	8255	False	NA	NA	False	NA	NA	NA	40760491	40837703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_40761452_40788850_40789005_40793338_40793371_40801980_40802060_40805076_40805125_40807343_40807427_40809896_40809969_40812450_40812490_40819189_40819286_40828577_40828679_40829136_40829309_40831872_40831982_40833712_40833871_40835149_40835219_40837649
ES_00054916	chr8	+	6023	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	-21	0	-21	0	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGGTGTC	NA	False	NA	12	True	NA	NA	NA	40964802	41003798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
ES_00054917	chr8	+	1763	12	NNC	ENSMUSG00000031600.12	novel	6002	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	63.2591416971845	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCTAGCTAATTTTTAA	NA	False	NA	13	True	ATTAAA	-13	NA	40964843	40999584	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_40965275_40979972_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
ES_00054919	chr8	+	1503	6	FSM	ENSMUSG00000031595.10	ENSMUST00000034004.10	1548	6	42	3	42	-3	multi-exon	FALSE	canonical	0	0	junction_2	0.632455532033676	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCTAAGTACTTGTGTC	4451	False	NA	NA	False	ATTAAA	-30	NA	41379311	41443819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_41379463_41391126_41391425_41429987_41430140_41438570_41438865_41441841_41441982_41443351
ES_00054920	chr8	+	6645	38	FSM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	-21	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	37.5002702692963	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	8	True	AATAAA	-20	NA	41692788	41785381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ES_00054921	chr8	+	6484	39	FSM	ENSMUSG00000031592.11	ENSMUST00000211247.2	6484	39	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	36.1727924568649	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAATGTAAATTAGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	41692814	41785129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ES_00054922	chr8	+	9688	38	ISM	ENSMUSG00000031592.11	ENSMUST00000211247.2	6484	39	-147	-1995	-121	1743	intron_retention	TRUE	canonical	3	93	junction_5	36.5724712558759	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAATTGTATTTTTATT	NA	False	NA	26	True	AATAAA	-18	NA	41692667	41787124	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
ES_00054925	chr8	+	1732	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	-197	17	-197	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCATTAGACTTAA	NA	False	NA	4	True	AATATA	-5	NA	43633380	43646901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ES_00054926	chr8	+	1508	7	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	179.198214276817	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633582	43646918	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643305_43643407_43646239
ES_00054927	chr8	+	1467	7	FSM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	46.4351399504968	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43636155	43646918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ES_00054930	chr8	+	1220	5	Intergenic	novelGene_3927	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_4	30.2572305408145	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATATGTTTACTATTAGT	NA	False	NA	103	True	NA	NA	NA	43806962	43824800	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_43807091_43809132_43809201_43811094_43811168_43818030_43818205_43824023
ES_00054931	chr8	+	1482	2	Intergenic	novelGene_3928	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGATTTAAAAGGACAATCG	NA	False	NA	NA	False	ATTAAA	-33	NA	43860406	43862004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_43860638_43860753
ES_00054934	chr8	+	14651	27	FSM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	17.6869557122435	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGCTTTAATGCCTGGT	NA	False	NA	8	True	AATAAA	-15	NA	45403244	45505282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_45406519_45441967_45442283_45460278_45460341_45462829_45463163_45463437_45463649_45466000_45466141_45470401_45470678_45470871_45471083_45475840_45479909_45480520_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ES_00054936	chr8	+	1633	11	FSM	ENSMUSG00000031634.14	ENSMUST00000130412.8	1613	11	-20	0	-14	0	multi-exon	FALSE	canonical	3	163	junction_5	20.5873747719324	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTAGCTGTGATTTAA	8846	False	NA	3	True	AATAAA	-16	NA	46428550	46449894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_46428626_46432245_46432333_46433351_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
ES_00054941	chr8	+	1189	3	FSM	ENSMUSG00000031631.16	ENSMUST00000145229.2	1166	3	-23	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	7	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTTAAAAAACAAGAAA	NA	False	NA	NA	False	AAAAAG	-2	NA	46616728	46623477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_46616901_46617798_46617934_46622595
ES_00054946	chr8	+	3821	22	NNC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	146	junction_21	63.7736217407477	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTTTCAAGTGCCTT	2241	False	NA	17	True	AATAAA	-26	NA	46924108	46989088	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988375_46988415
ES_00054947	chr8	+	997	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005072	47016034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ES_00054948	chr8	+	5322	13	FSM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	-19	-2372	-19	2372	multi-exon	FALSE	canonical	3	263	junction_11	27.7942589995368	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAAAACAACAAAACAAGA	NA	False	NA	NA	False	AATACA	-27	NA	47005043	47035414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ES_00054950	chr8	+	3571	14	FSM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	-30	-531	-3	531	multi-exon	FALSE	canonical	3	36	junction_3	96.1013395100261	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTGATCCAGAAATTC	NA	False	NA	NA	False	ATTAAA	-10	NA	47005059	47033573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ES_00054951	chr8	+	799	7	NIC	ENSMUSG00000031629.15	novel	3010	14	NA	NA	1	-265	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	151.504033683009	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGTTTAGAGCTTTGATC	NA	False	NA	NA	False	AATAAA	-21	NA	47005096	47015769	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014859_47015452
ES_00054953	chr8	+	2520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	81	0	-23	0	multi-exon	FALSE	canonical	3	221	junction_1	22.2816566310098	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070406	47092724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ES_00054954	chr8	+	2515	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	-23	-972	-23	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070406	47092724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ES_00054958	chr8	+	3048	7	NIC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	6	0	intron_retention	FALSE	canonical	3	147	junction_6	22.4010168419997	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTATATGTTTTGT	NA	False	NA	7	True	AATAAA	-17	NA	47986704	48005860	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48001010_48003729
ES_00054960	chr8	+	1679	1	FSM	ENSMUSG00000074357.4	ENSMUST00000098781.3	1665	1	-77	63	-77	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGATTTTATACAGCCTG	NA	False	NA	NA	False	NA	NA	NA	48128348	48130027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48128300_48130000
ES_00054962	chr8	+	244	1	Intergenic	novelGene_3932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAGAAAATTCTGAGAC	5008	False	NA	NA	False	TTTAAA	-1	NA	48141157	48141401	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_48141200_48141400
ES_00054964	chr8	+	2389	6	NIC	ENSMUSG00000031562.17	novel	2072	6	NA	NA	-27	0	combination_of_known_junctions	TRUE	canonical	3	56	junction_1	132.43775896624	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48562965	48594698	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ES_00054965	chr8	+	2015	7	NNC	ENSMUSG00000031562.17	novel	2072	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	140.865676759418	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563047	48594698	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377_48594014_48594037
ES_00054966	chr8	+	2072	6	FSM	ENSMUSG00000031562.17	ENSMUST00000033966.14	2072	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	152.941034389074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563047	48594698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48563317_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ES_00054967	chr8	+	2493	6	FSM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	146.129531580718	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563196	48594698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213_48591914_48593377
ES_00054971	chr8	+	1288	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	0	-107	0	24	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATTTAAGTCAGTTT	NA	False	NA	46	True	AATAAA	-40	NA	53964761	53976480	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
ES_00054972	chr8	+	1245	9	NIC	ENSMUSG00000031521.6	novel	1181	9	NA	NA	12	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	121.481415759778	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCTACTTCCTTA	NA	False	NA	23	True	AATAAA	-17	NA	53964773	53976457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973279_53973380_53974084_53974219_53976210
ES_00054975	chr8	+	2072	3	FSM	ENSMUSG00000038206.14	ENSMUST00000156840.3	2466	3	25	369	6	-369	multi-exon	TRUE	canonical	3	55	junction_1	10.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATACTTTCCTTGTCAAA	NA	False	NA	NA	False	AATAAA	-18	NA	57004149	57023791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57004412_57017592_57017930_57022318
ES_00054978	chr8	+	2759	3	FSM	ENSMUSG00000096917.3	ENSMUST00000180690.2	2618	3	2	-143	2	143	multi-exon	FALSE	canonical	3	58	junction_1	45.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCGTTGCTGTGAAGACA	NA	False	NA	NA	False	ACTAAA	-36	NA	57941089	57962054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57941228_57943373_57943502_57959561
ES_00054980	chr8	+	719	4	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	1585	1383	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	57.092517509351	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTCAGTCTATTGGTTT	NA	False	NA	12	True	NA	NA	NA	57942672	57963294	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_57942817_57943373_57943502_57959561_57959836_57963121
ES_00054981	chr8	+	562	3	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	2252	1336	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	59	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGACCACAGCCTAT	NA	False	NA	-35	True	NA	NA	NA	57943339	57963247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_57943502_57959561_57959836_57963121
ES_00054982	chr8	+	2628	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	False	NA	5	True	AAAACA	-17	NA	57964940	57969033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ES_00054983	chr8	+	2610	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	3	-11	at_least_one_novel_splicesite	FALSE	canonical	3	1278	junction_1	2424.68941310016	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATACTTAAGGATGTT	NA	False	NA	-6	True	AAAACA	-6	NA	57964943	57969022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_57965040_57965612_57965783_57966095_57966242_57966323_57966499_57966999
ES_00054984	chr8	+	660	1	FSM	ENSMUSG00000054717.8	ENSMUST00000211198.2	660	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTGATCTGAGAACTA	NA	False	NA	NA	False	AAAAAG	-26	NA	57965581	57966241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57965600_57966200
ES_00054986	chr8	+	1000	7	FSM	ENSMUSG00000038005.16	ENSMUST00000149267.8	1000	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	318.3514829032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343478	61360607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ES_00054987	chr8	+	1197	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	-6	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	22	True	AATAAA	-35	NA	61343478	61360614	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ES_00054991	chr8	+	5623	35	FSM	ENSMUSG00000031644.20	ENSMUST00000211672.2	5109	35	-73	-441	-3	3	multi-exon	TRUE	canonical	3	7	junction_18	18.7248331678183	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTTGTCCTTATTGAC	NA	False	NA	12	True	NA	NA	NA	61446225	61584383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61503061_61503194_61507553_61507657_61524784_61524869_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ES_00054992	chr8	+	5142	35	NIC	ENSMUSG00000031644.20	novel	5109	35	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	19.9234694939963	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTTGTCCTTATT	NA	False	NA	9	True	NA	NA	NA	61446286	61584380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_61446391_61446675_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61524784_61524869_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ES_00054993	chr8	+	5054	34	NIC	ENSMUSG00000031644.20	novel	5401	33	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	16.5039439313534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTTGTCCTTATT	NA	False	NA	9	True	NA	NA	NA	61446290	61584380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_61446391_61446675_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ES_00054994	chr8	+	5520	34	NIC	ENSMUSG00000031644.20	novel	5109	35	NA	NA	8	0	intron_retention	FALSE	canonical	3	24	junction_17	14.9073046478596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTTGTCCTTATT	NA	False	NA	9	True	NA	NA	NA	61446241	61584380	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61503061_61503194_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ES_00055004	chr8	+	914	1	FSM	ENSMUSG00000025588.5	ENSMUST00000026677.4	1347	1	525	-92	525	92	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGTTGAATATGAATAAT	NA	False	NA	NA	False	CATAAA	-2	NA	67943934	67944848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_67943900_67944800
ES_00055008	chr8	+	4260	18	FSM	ENSMUSG00000031864.17	ENSMUST00000110242.8	4250	18	-10	0	-10	0	multi-exon	FALSE	canonical	3	21	junction_16	214.082317705889	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246597	69282060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69276841_69276920_69279928
ES_00055010	chr8	+	4322	18	FSM	ENSMUSG00000031864.17	ENSMUST00000070713.8	4192	18	-68	-62	-10	60	multi-exon	FALSE	canonical	3	14	junction_17	216.037065895717	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTGAGCAGATGAGGAT	NA	False	NA	NA	False	NA	NA	NA	69246597	69282122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69277703_69277782_69279928
ES_00055012	chr8	+	4014	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	0	60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	169.630210471184	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTGAGCAGATGAGGAT	NA	False	NA	NA	False	NA	NA	NA	69246625	69282122	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928_69280808_69281009
ES_00055014	chr8	+	4137	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	-24	2	-24	-2	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAAGTCATCATTTTGTA	NA	False	NA	11	True	AATAAA	-22	NA	69333118	69359584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ES_00055020	chr8	+	1414	2	Antisense	novelGene_ENSMUSG00000111594.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTTCTACCTAATCT	6220	False	NA	NA	False	NA	NA	NA	70007660	70015058	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_70007901_70013884
ES_00055023	chr8	+	4746	22	FSM	ENSMUSG00000031862.12	ENSMUST00000238491.2	4746	22	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_6	47.7891248456669	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTGCTGCCACTTATA	9272	False	NA	NA	False	AATAAA	-20	NA	70243920	70260396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ES_00055033	chr8	+	946	6	FSM	ENSMUSG00000031860.18	ENSMUST00000134777.10	931	6	-15	0	13	0	multi-exon	FALSE	canonical	2	8	junction_2	11.2178429299041	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2257	False	NA	5	True	ATTAAA	-18	NA	70285324	70324942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70285502_70311729_70311804_70319117_70319254_70322678_70322833_70323227_70323335_70324644
ES_00055034	chr8	+	1114	7	FSM	ENSMUSG00000031860.18	ENSMUST00000156319.8	1101	7	-13	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	13.7446959466795	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2206	False	NA	5	True	ATTAAA	-18	NA	70285273	70324942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70285502_70311729_70311804_70317547_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
ES_00055036	chr8	+	2681	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2157	False	NA	NA	False	GATAAA	-14	NA	70495462	70524997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ES_00055038	chr8	+	1177	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	-14	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCAAACACCCCATT	447	False	NA	11	True	NA	NA	NA	70583982	70586391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
ES_00055039	chr8	+	1100	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	-22	0	-22	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	425	False	NA	18	True	NA	NA	NA	70583960	70586398	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
ES_00055040	chr8	+	1206	6	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	0	63362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	280.796438723856	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGAGGGAGTTTAGGGG	447	False	NA	NA	False	NA	NA	NA	70583982	70649761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585748_70586392_70649730
ES_00055042	chr8	+	756	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCGAGCCTCAGCCAGC	8821	False	NA	11	True	AATAAA	-11	NA	70592356	70598185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
ES_00055046	chr8	+	1781	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	-470	1	-470	0	multi-exon	TRUE	canonical	3	113	junction_6	45.467021015237	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8119	False	NA	4	True	NA	NA	NA	70604957	70620137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
ES_00055047	chr8	+	1459	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5900	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	77.3801492632316	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	622	False	NA	5	True	NA	NA	NA	70611330	70620138	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
ES_00055048	chr8	+	349	3	FSM	ENSMUSG00000002342.18	ENSMUST00000125755.8	371	3	22	0	22	0	multi-exon	FALSE	canonical	2	16	junction_1	99.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGCTGCTCCTACACAC	5839	False	NA	NA	False	NA	NA	NA	70625027	70633580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70625091_70633188_70633250_70633355
ES_00055049	chr8	+	3016	12	FSM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	0	2	0	-2	multi-exon	FALSE	canonical	3	91	junction_1	38.6768771547844	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTGGATCCTTATCTT	5866	False	NA	NA	False	AATAAA	-42	NA	70625054	70636329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ES_00055052	chr8	+	1559	6	ISM	ENSMUSG00000002342.18	ENSMUST00000149105.2	2093	11	6236	17	0	0	3prime_fragment	FALSE	canonical	3	210	junction_4	8.37615663654877	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	NA	False	NA	7	True	AATAAA	-17	NA	70633188	70635500	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ES_00055053	chr8	+	3887	11	FSM	ENSMUSG00000036054.16	ENSMUST00000093458.11	3874	11	-13	0	-6	0	multi-exon	FALSE	canonical	1	3	junction_10	33.7467035427166	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	1086	False	NA	26	True	AATAAA	-17	NA	70686869	70715755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70715520
ES_00055055	chr8	+	3600	12	NIC	ENSMUSG00000036054.16	novel	4609	11	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_10	11.7353742277127	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	1460	False	NA	26	True	AATAAA	-17	NA	70687243	70715755	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70713880_70713968_70715520
ES_00055056	chr8	+	3517	6	FSM	ENSMUSG00000036054.16	ENSMUST00000136758.2	3517	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	8.51821577561874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTATGTACACAGCG	1489	False	NA	NA	False	AATAAA	-18	NA	70687272	70707413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228
ES_00055066	chr8	+	1038	3	FSM	ENSMUSG00000055681.15	ENSMUST00000140363.2	1038	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_1	23.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCTCCTGAAGAATGGGAT	675	False	NA	NA	False	NA	NA	NA	70755390	70759067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70755583_70757283_70757347_70758284
ES_00055071	chr8	+	1799	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	70980495	70987977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ES_00055078	chr8	+	2069	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	-153	0	-36	0	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71046986	71049938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ES_00055079	chr8	+	1775	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210005.2	1914	10	139	0	-107	0	multi-exon	FALSE	canonical	3	316	junction_3	42.074302294634	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	False	NA	20	True	AATAAA	-16	NA	71047269	71049940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ES_00055082	chr8	+	1688	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	-21	0	-21	0	mono-exon	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTGTCCGCCTCCTT	NA	False	NA	34	True	AGTAAA	-16	NA	71151577	71153265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71151600_71153300
ES_00055086	chr8	+	1379	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	-16	0	-8	0	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207343	71211281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ES_00055088	chr8	+	1624	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110093.9	1442	5	25	-207	1	207	multi-exon	FALSE	canonical	3	27	junction_1	12.8646803302686	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGCCTGGGTTTTGGACA	NA	False	NA	NA	False	NA	NA	NA	71207352	71211530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71207518_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ES_00055097	chr8	+	3614	19	FSM	ENSMUSG00000004677.18	ENSMUST00000212412.2	3614	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	41.6278337559124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGTGGTCTTGCTGCT	NA	False	NA	12	True	AATAAA	-15	NA	71801421	71813353	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71801546_71801578_71801839_71802778_71802834_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807157_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811259_71811308_71811606_71811738_71811968
ES_00055101	chr8	+	964	8	NNC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	294.500476421083	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71819860	71822373	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_71820014_71820174_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ES_00055102	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ES_00055104	chr8	+	691	5	FSM	ENSMUSG00000002395.15	ENSMUST00000146221.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	110.016760086816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTCTTTTGCTTCCAGAA	NA	False	NA	NA	False	AAGAAA	-19	NA	71819886	71821475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193
ES_00055108	chr8	+	895	5	FSM	ENSMUSG00000002395.15	ENSMUST00000140236.2	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	802	junction_3	40.4042077016738	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71820423	71822376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71820493_71820602_71820756_71821193_71821207_71821493_71821948_71822170
ES_00055110	chr8	+	1611	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCCTTGAACCGAGAT	NA	False	NA	NA	False	NA	NA	NA	71823982	71826333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
ES_00055113	chr8	+	2313	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	-672	0	-658	0	multi-exon	TRUE	canonical	2	5	junction_4	33.431833632034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACAGTGTGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	71857995	71862127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ES_00055114	chr8	+	2758	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	-658	36	-658	0	multi-exon	FALSE	canonical	3	14	junction_4	30.5366071298041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAACAACAAAGCCA	NA	False	NA	-18	True	NA	NA	NA	71857995	71862512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ES_00055117	chr8	+	3355	9	NNC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	-9	1273	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	25.4358875410315	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGTTCCAGGACAGCCA	NA	False	NA	NA	False	NA	NA	NA	71858644	71863821	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859919_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ES_00055120	chr8	+	1942	5	FSM	ENSMUSG00000074247.11	ENSMUST00000135052.8	1929	5	-13	0	-13	0	multi-exon	FALSE	canonical	2	81	junction_1	303.826739277503	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921829	71928742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71921970_71924684_71924762_71924838_71924891_71926418_71926481_71927131
ES_00055122	chr8	+	1894	4	FSM	ENSMUSG00000074247.11	ENSMUST00000130098.8	1881	4	-13	0	-13	0	multi-exon	FALSE	canonical	2	31	junction_2	319.275568888208	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921829	71928742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71921970_71924680_71924762_71926418_71926481_71927131
ES_00055123	chr8	+	1884	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	-19	0	-13	0	multi-exon	FALSE	canonical	1	1	junction_3	377.602966090045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921829	71928742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
ES_00055131	chr8	+	1142	3	FSM	ENSMUSG00000031813.9	ENSMUST00000212336.2	684	3	-253	-205	-253	205	multi-exon	FALSE	canonical	3	418	junction_1	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCTAAAGCCCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	71999122	72000934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71999679_72000221_72000279_72000405
ES_00055134	chr8	+	3323	12	ISM	ENSMUSG00000031808.8	ENSMUST00000034267.5	2795	14	1655	-593	-73	0	3prime_fragment	FALSE	canonical	1	37	junction_10	35.20847005532	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCCTGCCAGAGCACAGC	NA	False	NA	18	True	AATAAA	-14	NA	72023225	72039945	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
ES_00055140	chr8	+	1062	5	FSM	ENSMUSG00000031807.11	ENSMUST00000143441.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	254.639941878724	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044934	72048913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72045433_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ES_00055144	chr8	+	6123	24	NNC	ENSMUSG00000031805.18	novel	4019	25	NA	NA	-90	9	intron_retention	TRUE	canonical	3	22	junction_11	48.3199794689424	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCCCTGGGAAAAGCAAC	NA	False	NA	19	True	AATAAA	-22	NA	72128849	72143228	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134828_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
ES_00055148	chr8	+	623	2	FSM	ENSMUSG00000079019.3	ENSMUST00000034261.8	623	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	3210	False	NA	10	True	AATAAA	-13	NA	72141857	72143219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72142077_72142815
ES_00055153	chr8	+	2829	3	NIC	ENSMUSG00000066880.16	novel	2920	4	NA	NA	23	-7	combination_of_known_splicesites	FALSE	canonical	2	14	junction_2	30	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTTGGTTAGTGTTCTA	NA	False	NA	22	True	AATAAA	-10	NA	72676718	72688466	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_72676817_72682045_72682173_72685862
ES_00055154	chr8	+	2689	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	-33	-2055	-4	0	multi-exon	FALSE	canonical	3	96	junction_2	182.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704877	72724177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72705005_72719637_72719765_72721742
ES_00055155	chr8	+	2820	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	-36	-2280	-4	0	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704877	72724177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
ES_00055157	chr8	+	2307	4	FSM	ENSMUSG00000052446.18	ENSMUST00000138304.8	2307	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	188.733203814862	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTACCTGGTTCCACTTT	NA	False	NA	NA	False	NA	NA	NA	72704909	72723770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72705005_72719637_72719761_72719943_72720005_72721742
ES_00055158	chr8	+	2750	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	-37	0	-4	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704877	72724177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
ES_00055163	chr8	+	2044	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889651	72906984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ES_00055172	chr8	+	1548	4	NNC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	27	29385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1400.60375870154	160	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTCAGTGGCCGGCCCCA	NA	False	NA	NA	False	NA	NA	NA	73072903	73104885	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_73072994_73073269_73074087_73074587_73075194_73104850
ES_00055175	chr8	+	244	1	FSM	ENSMUSG00000110532.2	ENSMUST00000212739.2	178	1	63	-129	63	129	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCCCACAAGAATCAATAT	NA	False	NA	NA	False	AATAAA	-36	NA	73284937	73285181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_73284900_73285200
ES_00055179	chr8	+	1441	6	FSM	ENSMUSG00000031622.17	ENSMUST00000212095.2	1257	6	-51	-133	-46	130	multi-exon	FALSE	canonical	3	644	junction_5	28.5587114555261	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTATGCTTCATACCATG	NA	False	NA	NA	False	NA	NA	NA	73449866	73466664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996
ES_00055181	chr8	+	3904	11	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	24.8185414559357	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGTCCAGTCTTAGCT	NA	False	NA	26	True	ATTAAA	-17	NA	75720281	75758600	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ES_00055182	chr8	+	3916	11	FSM	ENSMUSG00000034518.15	ENSMUST00000041759.14	4191	11	275	0	-48	0	multi-exon	FALSE	canonical	3	15	junction_4	33.0128762757806	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGTCCAGTCTTAGCT	NA	False	NA	26	True	ATTAAA	-17	NA	75720258	75758600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ES_00055183	chr8	+	3989	12	FSM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	21.8858798209528	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	32	True	ATTAAA	-23	NA	75720306	75758606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ES_00055184	chr8	+	2626	7	FSM	ENSMUSG00000034518.15	ENSMUST00000109940.2	2656	7	30	0	30	0	multi-exon	FALSE	canonical	3	11	junction_1	40.0489284084689	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACAGTTGTATAAAGAAA	NA	False	NA	-33	True	AATAAA	-25	NA	75742879	75758541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ES_00055188	chr8	+	2144	14	ISM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	14288	0	-6359	0	3prime_fragment	FALSE	canonical	3	282	junction_12	24.216967986549	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	3717	False	NA	12	True	AATAAA	-25	NA	75774620	75796749	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ES_00055192	chr8	+	2672	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	-73	5	-66	0	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836130	75854316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ES_00055193	chr8	+	3381	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCTGGCTGAAGTGTTTG	NA	False	NA	1	True	NA	NA	NA	75836196	75855067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ES_00055194	chr8	+	2653	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836251	75854316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ES_00055195	chr8	+	760	5	FSM	ENSMUSG00000005410.7	ENSMUST00000212648.2	760	5	0	0	0	0	multi-exon	FALSE	canonical	3	1485	junction_2	124.371168282685	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACAGATTTTCACTGGG	NA	False	NA	NA	False	NA	NA	NA	75847527	75850848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468
ES_00055196	chr8	+	2809	3	FSM	ENSMUSG00000034472.14	ENSMUST00000139848.8	2810	3	0	1	0	-1	multi-exon	TRUE	canonical	3	15	junction_1	0.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGATGCTTACTTCCTGT	NA	False	NA	10	True	ATTAAA	-20	NA	75940571	75950740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75940707_75945163_75945444_75948346
ES_00055206	chr8	+	7613	21	FSM	ENSMUSG00000036990.14	ENSMUST00000173286.8	7213	21	-400	0	-314	0	multi-exon	FALSE	canonical	3	98	junction_10	41.3350940485201	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGGATTCTTTGGTCT	NA	False	NA	17	True	ATTAAA	-17	NA	80365932	80404301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_80366694_80370382_80370467_80372926_80372978_80377634_80377682_80378300_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387669_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
ES_00055211	chr8	+	2801	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTGGATTTATGAC	NA	False	NA	NA	False	NA	NA	NA	80438448	80503949	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ES_00055212	chr8	+	3393	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-4	489	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGGTGTTGAGATATTT	NA	False	NA	NA	False	NA	NA	NA	80438475	80504438	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ES_00055213	chr8	+	4552	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	39	0	-39	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAGTCCATGTGACTAT	NA	False	NA	NA	False	NA	NA	NA	80438479	80505649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ES_00055219	chr8	+	3014	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	-18	0	-18	0	multi-exon	FALSE	canonical	3	562	junction_2	45.5	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACGAGGTGCTCGGCT	NA	False	NA	NA	False	AATAAA	-23	NA	84334803	84339282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84335172_84336442_84337024_84337217
ES_00055222	chr8	+	1679	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	-23	0	-23	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84441782	84449977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ES_00055223	chr8	+	1551	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441896	84449904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ES_00055224	chr8	+	1814	11	FSM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	-20	0	-20	0	multi-exon	FALSE	canonical	3	134	junction_1	682.0140834323	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84442156	84449977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ES_00055235	chr8	+	399	3	FSM	ENSMUSG00000047986.13	ENSMUST00000154171.2	393	3	-6	0	-6	0	multi-exon	FALSE	canonical	3	94	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTGCTGGTAGGCCC	NA	False	NA	NA	False	NA	NA	NA	84752697	84753678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84752904_84753377_84753521_84753628
ES_00055236	chr8	+	1438	5	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	4598	1032	-6	75	3prime_fragment	FALSE	canonical	3	94	junction_2	4.49305018890286	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACGACGGAAGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	84752697	84755892	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
ES_00055237	chr8	+	4181	21	FSM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	-9	0	-7	0	multi-exon	FALSE	canonical	3	25	junction_6	9.14002188181188	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACTGATGACGAGAGCA	NA	False	NA	21	True	AATAAA	-17	NA	84793455	84823621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84793678_84800359_84800699_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ES_00055238	chr8	+	2493	9	FSM	ENSMUSG00000008129.15	ENSMUST00000118856.8	2366	9	-128	1	6	0	multi-exon	FALSE	canonical	2	9	junction_1	4.49826355386165	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	1889	False	NA	4	True	AATAAA	-14	NA	84874659	84899218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
ES_00055244	chr8	+	1389	2	ISM	ENSMUSG00000034656.19	ENSMUST00000238337.2	2941	16	38005	-13	-492	13	3prime_fragment	FALSE	canonical	3	39	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTGGTCTTTGTCCCT	NA	False	NA	21	True	NA	NA	NA	85365127	85366888	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_85365495_85365866
ES_00055245	chr8	+	1018	3	FSM	ENSMUSG00000001909.17	ENSMUST00000175980.8	1014	3	-4	0	-4	0	multi-exon	FALSE	canonical	3	37	junction_1	280.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTGTGAGGTACGGGCC	NA	False	NA	NA	False	AATGAA	-44	NA	85412931	85417565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85413329_85416336_85416538_85417145
ES_00055246	chr8	+	2353	17	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTGGCCTCTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	85415475	85426280	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00055247	chr8	+	2586	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	-19	0	-19	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415475	85426437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00055249	chr8	+	2061	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	-17	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415875	85426415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00055250	chr8	+	2138	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415875	85426416	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00055253	chr8	+	869	3	FSM	ENSMUSG00000001909.17	ENSMUST00000175767.2	502	3	-367	0	306	0	multi-exon	FALSE	canonical	3	591	junction_1	22	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	3754	False	NA	14	True	AATAAA	-14	NA	85425332	85426415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85425888_85425969_85426100_85426231
ES_00055257	chr8	+	1934	12	FSM	ENSMUSG00000003808.19	ENSMUST00000129595.8	1920	12	-14	0	-8	0	multi-exon	FALSE	canonical	3	583	junction_4	51.0548238790647	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583609	85595885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
ES_00055261	chr8	+	880	5	FSM	ENSMUSG00000003824.13	ENSMUST00000170296.2	929	5	49	0	-33	0	multi-exon	FALSE	canonical	3	66	junction_1	678.634428466461	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598788	85614075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85598883_85599330_85599462_85610059_85610214_85612563_85612753_85613763
ES_00055263	chr8	+	1518	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	-4	-829	-4	64	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTCCCATCCCATGA	NA	False	NA	NA	False	NA	NA	NA	85598817	85614914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
ES_00055264	chr8	+	655	5	NNC	ENSMUSG00000003824.13	novel	1686	5	NA	NA	-4	43044	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	731.438437259077	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACACACACACCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	85598817	85657894	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763_85614023_85657865
ES_00055265	chr8	+	803	6	NNC	ENSMUSG00000003824.13	novel	1686	5	NA	NA	0	45016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	645.007720884022	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGGGAGGGGGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	85598821	85659866	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763_85614023_85659839
ES_00055268	chr8	+	614	3	FSM	ENSMUSG00000003812.14	ENSMUST00000153215.8	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCCCCGTACCTGCTT	NA	False	NA	NA	False	NA	NA	NA	85635275	85636097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85635500_85635613_85635792_85635885
ES_00055270	chr8	+	4348	7	FSM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	-68	-207	6	207	multi-exon	FALSE	canonical	3	65	junction_4	11.7567947256989	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAATTCACTGATAGAAA	NA	False	NA	NA	False	NA	NA	NA	85635281	85641357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85640158_85640690
ES_00055272	chr8	+	689	2	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85641150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85640158_85640599
ES_00055273	chr8	+	1505	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	-24	19	0	-19	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGAGTTCAAGTTTGCG	NA	False	NA	NA	False	AATAAA	-18	NA	85696215	85701444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ES_00055275	chr8	+	1570	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109733.8	1590	6	0	20	0	-20	multi-exon	FALSE	canonical	3	752	junction_1	1259.55458793972	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGAGTTCAAGTTTGC	NA	False	NA	NA	False	AATAAA	-17	NA	85696395	85701443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85696638_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ES_00055279	chr8	+	3222	2	NIC	ENSMUSG00000041203.10	novel	902	3	NA	NA	-16	0	intron_retention	FALSE	canonical	3	1246	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753435	85756915	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85756246_85756503
ES_00055280	chr8	+	919	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	-17	0	-17	0	multi-exon	FALSE	canonical	3	920	junction_1	163	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753434	85756915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85753864_85756167_85756246_85756503
ES_00055282	chr8	+	4790	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	140	junction_1	62.568282144834	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763543	85784209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00055283	chr8	+	4944	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-111	0	combination_of_known_junctions	TRUE	canonical	3	89	junction_1	70.9023193477399	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763432	85784209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00055284	chr8	+	4933	25	FSM	ENSMUSG00000031691.15	ENSMUST00000211601.2	2941	25	-82	-1910	-82	0	multi-exon	FALSE	canonical	3	53	junction_1	77.0544540496452	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763714	85784209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00055285	chr8	+	4897	25	FSM	ENSMUSG00000031691.15	ENSMUST00000166592.2	4884	25	-16	3	-16	0	multi-exon	FALSE	canonical	3	53	junction_1	94.0795227306252	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763780	85784209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00055286	chr8	+	5669	22	FSM	ENSMUSG00000031691.15	ENSMUST00000210576.2	5669	22	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_6	40.5332371105195	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85764345	85784209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781883_85781968_85782097_85782179
ES_00055294	chr8	+	1097	7	FSM	ENSMUSG00000060038.15	ENSMUST00000142422.8	1097	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	32.4704994315353	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGAGTCAGTCTGCATC	NA	False	NA	12	True	AATAAA	-18	NA	85799686	85801780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ES_00055296	chr8	+	798	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	13.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807601	85808968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85807908_85808405_85808504_85808574
ES_00055298	chr8	+	3062	23	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	13	-689	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	54.9261901431035	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCAGTGCACTATCTTTT	NA	False	NA	21	True	ATTAAA	-23	NA	85809911	85824222	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85810118_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
ES_00055300	chr8	+	1452	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	0	14	0	-14	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTATATGCATTTGA	NA	False	NA	NA	False	AATAAA	-3	NA	86026317	86034893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ES_00055301	chr8	+	1287	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026419	86034700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ES_00055307	chr8	+	469	5	FSM	ENSMUSG00000036879.16	ENSMUST00000159716.8	481	5	12	0	12	0	multi-exon	FALSE	canonical	3	26	junction_1	41.5150575092941	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGGACGGACCCATGAGC	NA	False	NA	NA	False	NA	NA	NA	86567599	86606354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_86567733_86569649_86569742_86602262_86602353_86604738_86604878_86606339
ES_00055310	chr8	+	5365	32	FSM	ENSMUSG00000036879.16	ENSMUST00000053771.14	5351	32	-14	0	-3	0	multi-exon	FALSE	canonical	3	66	junction_1	17.4946996581545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTCACGGAAGCTGAACA	NA	False	NA	NA	False	NA	NA	NA	86567616	86788005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ES_00055311	chr8	+	1000	8	NIC	ENSMUSG00000036879.16	novel	1013	8	NA	NA	3	1	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	36.0453229437947	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGAAAGGAGCAAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	86567633	86649046	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_86567733_86569649_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755
ES_00055312	chr8	+	4645	33	NNC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	21	2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	30.84080533056	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAATGTCTGCTTTCCAA	NA	False	NA	10	True	NA	NA	NA	86567665	86787272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_86567733_86569632_86569742_86601645_86601708_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ES_00055318	chr8	+	498	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTGTGTCCATTCCTCC	198	False	NA	6	True	AATAAA	-14	NA	88199439	88252181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
ES_00055319	chr8	+	682	4	FSM	ENSMUSG00000097248.10	ENSMUST00000181159.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.2509951478623	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	198	False	NA	7	True	AATAAA	-15	NA	88199439	88252182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88251859
ES_00055320	chr8	+	606	5	NIC	ENSMUSG00000097248.10	novel	498	4	NA	NA	-45	-22	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	79.1023861839831	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGTCAATAAAAAGATACT	153	False	NA	-19	True	NA	NA	NA	88199394	88252156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_88199589_88240436_88240525_88248363_88248442_88250923_88251056_88252042
ES_00055323	chr8	+	447	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	227	False	NA	7	True	AATAAA	-15	NA	88199761	88252182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
ES_00055327	chr8	+	2222	4	FSM	ENSMUSG00000036810.17	ENSMUST00000121097.8	2209	4	-13	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	27.6526068692749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTTTATT	NA	False	NA	17	True	NA	NA	NA	88845414	88858315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322
ES_00055334	chr8	+	4518	13	NNC	ENSMUSG00000036779.13	novel	4624	13	NA	NA	15	5	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	33.4849676057116	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCCTGCTCATTTGTTC	NA	False	NA	19	True	AGTAAA	-20	NA	88925856	88986355	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_88925942_88926653_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
ES_00055337	chr8	+	3035	10	FSM	ENSMUSG00000031661.13	ENSMUST00000034086.13	3035	10	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_7	4.46661138716484	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTGTTTCACATCCTT	NA	False	NA	NA	False	NA	NA	NA	89247981	89320246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_89248160_89248274_89248308_89248914_89249049_89300825_89300893_89309830_89309938_89311781_89311878_89315781_89315930_89316355_89316441_89317350_89317479_89318187
ES_00055339	chr8	+	4032	15	FSM	ENSMUSG00000036712.16	ENSMUST00000209206.2	4032	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	15.8765968182924	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAGAGTCTATAAATAT	1701	False	NA	2	True	TATAAA	-11	NA	89428933	89475077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_89429067_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ES_00055340	chr8	+	7941	16	FSM	ENSMUSG00000036712.16	ENSMUST00000109626.4	7945	16	4	0	4	0	multi-exon	FALSE	canonical	3	38	junction_5	9.78888258292142	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCCTTGATTTCTTCAG	4621	False	NA	NA	False	ATTAAA	-19	NA	89431853	89478573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ES_00055343	chr8	+	407	2	Intergenic	novelGene_3986	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCTTCATAAATAATCCT	3408	False	NA	NA	False	ATTAAA	-18	NA	89779838	89784300	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_89779957_89784011
ES_00055345	chr8	+	11565	40	FSM	ENSMUSG00000056608.15	ENSMUST00000109614.9	11565	40	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	7.17527348875259	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	NA	False	NA	4	True	ATTAAA	-15	NA	91555462	91781136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_91555543_91576261_91576388_91658876_91660491_91683010_91683343_91699752_91699865_91703548_91703696_91704107_91704177_91704255_91704312_91705509_91705628_91710089_91710177_91710895_91711034_91712686_91712809_91716057_91716302_91721087_91721265_91723467_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761532_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ES_00055346	chr8	+	11521	39	NNC	ENSMUSG00000056608.15	novel	9419	38	NA	NA	-141	-1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_8	6.62175546432839	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGATGTCAGCCTCC	4034	False	NA	3	True	ATTAAA	-14	NA	91635100	91781135	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_91635264_91658876_91660491_91683010_91683343_91699752_91699865_91703548_91703696_91704107_91704177_91704255_91704312_91705509_91705628_91710089_91710177_91710895_91711034_91712686_91712809_91716057_91716302_91721087_91721265_91723467_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761532_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ES_00055358	chr8	+	2398	4	NNC	ENSMUSG00000033009.16	novel	718	7	NA	NA	-11	4321	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	78.7245549721023	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGTTGCCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	94763907	94770401	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_94764071_94765592_94765739_94766624_94766676_94768363
ES_00055361	chr8	+	372	3	FSM	ENSMUSG00000031757.8	ENSMUST00000034207.8	398	3	20	6	20	-6	multi-exon	FALSE	canonical	1	2	junction_1	0	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGTCTGGTGGCTCA	6301	False	NA	NA	False	AATAAA	-10	NA	94863844	94865653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_94863901_94864858_94864925_94865403
ES_00055364	chr8	+	512	4	NNC	ENSMUSG00000031762.8	novel	511	3	NA	NA	26	50170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6424.26213661927	1284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGTGAGATGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	94899317	94950366	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_94899504_94899754_94899821_94899963_94900189_94950331
ES_00055365	chr8	+	558	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	0	-9	0	9	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTGTGGTTTGGCAAT	NA	False	NA	38	True	AATAAA	-27	NA	94905709	94906964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_94905967_94906450_94906517_94906729
ES_00055369	chr8	+	2775	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	-53	206	-16	0	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941175	95041488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ES_00055377	chr8	+	1338	2	FSM	ENSMUSG00000074151.14	ENSMUST00000137032.2	1727	2	353	36	353	-32	multi-exon	FALSE	canonical	1	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATAAACGCAGATGTAAC	NA	False	NA	NA	False	NA	NA	NA	95252047	95253860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_95252132_95252606
ES_00055381	chr8	+	3397	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8240	False	NA	8	True	AATAAA	-25	NA	95328693	95386903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
ES_00055384	chr8	+	741	5	FSM	ENSMUSG00000031782.16	ENSMUST00000159424.8	726	5	-15	0	-13	0	multi-exon	FALSE	canonical	3	153	junction_1	12.5797456254091	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCATAGTGCACTTGGCA	NA	False	NA	NA	False	NA	NA	NA	95565017	95577345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142
ES_00055385	chr8	+	844	8	FSM	ENSMUSG00000031782.16	ENSMUST00000159871.4	831	8	-13	0	-13	0	multi-exon	FALSE	canonical	2	4	junction_5	58.5585351662448	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGTCTAAACCAGCGTC	NA	False	NA	NA	False	NA	NA	NA	95565017	95580752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95579742_95579899_95580232_95580287_95580741
ES_00055396	chr8	+	2519	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	2	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTTGTCACTAACTG	NA	False	NA	NA	False	AATAAA	-14	NA	96360080	96371688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_96360412_96364437_96364672_96369734
ES_00055400	chr8	+	2757	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	-19	0	7	0	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	False	NA	9	True	AATAAA	-14	NA	96429671	96441584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ES_00055402	chr8	+	1352	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	8	-6	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	132.221720353856	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAAGTTCAAACTTTCTT	NA	False	NA	33	True	AATAAA	-20	NA	96442550	96445632	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
ES_00055407	chr8	+	575	1	FSM	ENSMUSG00000110715.2	ENSMUST00000212776.2	1238	1	792	-129	792	129	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGTGGATTCCCATGGC	NA	False	NA	NA	False	NA	NA	NA	97891216	97891791	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_97891200_97891800
ES_00055423	chr8	+	927	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	-32	0	2	0	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	253	False	NA	13	True	AATAAA	-15	NA	106052987	106055684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
ES_00055424	chr8	+	818	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	-17	0	-9	0	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	242	False	NA	16	True	AATAAA	-18	NA	106052976	106055687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
ES_00055431	chr8	+	3894	12	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-111	-1	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_11	120.768818152769	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGAAGACTCCGTCTTT	NA	False	NA	37	True	AATAAA	-20	NA	106363088	106409553	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406705_106406892_106408072
ES_00055432	chr8	+	4017	13	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	162.620959254608	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363144	106409554	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_106363353_106370147_106370265_106380010_106380180_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
ES_00055433	chr8	+	3768	12	NIC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_10	67.2234463229697	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363221	106409554	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406705_106406892_106408066
ES_00055434	chr8	+	4544	39	FSM	ENSMUSG00000050357.10	ENSMUST00000213019.2	4194	39	-350	0	-350	0	multi-exon	TRUE	canonical	3	28	junction_20	8.5824984578148	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTCTCCTCCTGCCGCA	NA	False	NA	NA	False	NA	NA	NA	106412555	106424775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415345_106415426_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424192_106424274_106424499_106424578_106424662
ES_00055437	chr8	+	686	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_1	13	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAGAGTACAGGGC	NA	False	NA	NA	False	NA	NA	NA	106427771	106429555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106427919_106428805_106429029_106429239
ES_00055438	chr8	+	1234	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	False	NA	8	True	ATTAAA	-14	NA	106427818	106430122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106427950_106428805_106429029_106429242
ES_00055440	chr8	+	1774	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	15	-528	15	525	multi-exon	FALSE	canonical	3	15	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAAAGGGGCACGGAACC	NA	False	NA	NA	False	NA	NA	NA	106428295	106430653	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106428436_106428805_106429029_106429242
ES_00055442	chr8	+	202	2	Intergenic	novelGene_4001	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	65	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTGCTACTCTTGACCA	NA	False	NA	NA	False	NA	NA	NA	106543061	106561576	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_106543089_106561401
ES_00055445	chr8	+	2023	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	0	-1075	0	1075	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTTTATTCCTAACG	NA	False	NA	31	True	AATAAA	-18	NA	106587211	106607037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ES_00055449	chr8	+	4767	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	-1	0	intron_retention	TRUE	canonical	3	128	junction_16	71.6479755328731	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3255	False	NA	14	True	AATAAA	-6	NA	106607511	106619840	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ES_00055450	chr8	+	4645	29	FSM	ENSMUSG00000036270.17	ENSMUST00000119261.8	4645	29	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_18	83.7903344847198	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3326	False	NA	14	True	AATAAA	-6	NA	106607582	106619840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616304_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ES_00055454	chr8	+	996	4	FSM	ENSMUSG00000031901.13	ENSMUST00000141374.2	777	4	-39	-180	-24	180	multi-exon	FALSE	canonical	3	189	junction_1	8.05536398239638	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAATAAAATTTTATTG	NA	False	NA	NA	False	NA	NA	NA	106738114	106757695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983
ES_00055461	chr8	+	5984	10	FSM	ENSMUSG00000031902.11	ENSMUST00000109308.3	5984	10	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	15.9706520967386	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAAATCTGAGTTTTT	NA	False	NA	9	True	AATAAA	-20	NA	106786264	106857169	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106786626_106805235_106806374_106810442_106810606_106818663_106818864_106822795_106822969_106825703_106825845_106827565_106827622_106830656_106830784_106834756_106835762_106854549
ES_00055468	chr8	+	5598	10	NIC	ENSMUSG00000031904.6	novel	3750	10	NA	NA	27	1722	intron_retention	FALSE	canonical	3	12	junction_1	155.192671966491	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTTGCTTCTGTGTAAA	1888	False	NA	NA	False	AAAAAG	-2	NA	106895544	106927060	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106895769_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ES_00055471	chr8	+	2644	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	-12	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5.09901951359278	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTATGGCCAAGGCTCAT	NA	False	NA	NA	False	AAGAAA	-13	NA	107141958	107152521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
ES_00055472	chr8	+	4586	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	-37	-165	-37	165	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTATTTTAAGTATGGCC	NA	False	NA	NA	False	NA	NA	NA	107237485	107284094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
ES_00055474	chr8	+	789	4	FSM	ENSMUSG00000000303.13	ENSMUST00000136580.2	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	865	junction_3	55.355417279813	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTAATTTTGTAGACAC	5841	False	NA	NA	False	NA	NA	NA	107330774	107380551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395
ES_00055477	chr8	+	2232	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	0	0	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107620282	107649720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ES_00055478	chr8	+	3127	15	FSM	ENSMUSG00000041438.9	ENSMUST00000212718.2	3113	15	-14	0	-14	0	multi-exon	FALSE	canonical	3	1116	junction_3	94.3690378573526	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTAGACATTTTAAATT	NA	False	NA	11	True	AATAAA	-16	NA	107621206	107649719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107645438_107648803_107648915_107649496
ES_00055483	chr8	+	3036	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783508	107787563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ES_00055489	chr8	+	2098	8	FSM	ENSMUSG00000031930.12	ENSMUST00000212993.2	2098	8	0	0	0	0	multi-exon	FALSE	canonical	3	617	junction_2	50.4570943212839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	11	True	AATAAA	-22	NA	108277968	108283845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
ES_00055493	chr8	+	2057	8	FSM	ENSMUSG00000031728.11	ENSMUST00000212964.2	2033	8	-24	0	-24	0	multi-exon	FALSE	canonical	2	17	junction_2	5.70356136505061	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	False	NA	8	True	AATAAA	-21	NA	110432153	110451564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_110432496_110432988_110433052_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ES_00055494	chr8	+	2130	9	FSM	ENSMUSG00000031728.11	ENSMUST00000034163.9	2127	9	-4	1	-1	-1	multi-exon	FALSE	canonical	2	14	junction_5	6.08147802758507	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTCCCTTGTCTCA	NA	False	NA	7	True	AATAAA	-20	NA	110432176	110451563	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_110432496_110432988_110433052_110434660_110434777_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ES_00055499	chr8	+	4887	5	FSM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	-28	4	-12	-4	multi-exon	FALSE	canonical	3	11	junction_2	6.21992765231236	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAATTGCTGAGACTTG	923	False	NA	NA	False	AATAAA	-12	NA	110806365	110819369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053
ES_00055504	chr8	+	3083	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	-14	0	0	0	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7347	False	NA	16	True	AATAAA	-20	NA	111345216	111447030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
ES_00055505	chr8	+	4717	14	FSM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	11.3147544665827	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCGGCTTCCTCCTGGC	NA	False	NA	7	True	AATAAA	-17	NA	111448107	111468032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_111448423_111452825_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455359_111455518_111455801_111455910_111456654_111456753_111458689_111458811_111463777_111463853_111464203_111464381_111464561_111464728_111464921
ES_00055506	chr8	+	4801	14	NIC	ENSMUSG00000033763.15	novel	4717	14	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	23.3298954920214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCGGCTTCCTCCTGGC	NA	False	NA	7	True	AATAAA	-17	NA	111448119	111468032	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_111448423_111452825_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455359_111455518_111455801_111455910_111456654_111456753_111458593_111458811_111463777_111463853_111464203_111464381_111464561_111464728_111464921
ES_00055515	chr8	+	5773	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	-23	0	0	0	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGAGTCTGTGTTT	NA	False	NA	70	True	NA	NA	NA	111760510	111784296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ES_00055516	chr8	+	5359	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-59	combination_of_known_junctions	FALSE	canonical	2	881	junction_1	574.494062197339	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCTGTTGTGTTTTTTC	NA	False	NA	11	True	AGTAAA	-28	NA	111760510	111784237	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ES_00055519	chr8	+	7609	18	NIC	ENSMUSG00000033624.11	novel	4938	18	NA	NA	-2	2705	combination_of_known_junctions	TRUE	canonical	3	13	junction_1	9.5822789149634	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTTGTGAAATGTCC	NA	False	NA	16	True	AATAAA	-25	NA	111821259	111866411	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_111821459_111828492_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ES_00055522	chr8	+	400	1	Intergenic	novelGene_4014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGATACAA	NA	False	NA	NA	False	NA	NA	NA	112203074	112203474	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_112203100_112203500
ES_00055525	chr8	+	1238	5	FSM	ENSMUSG00000033545.15	ENSMUST00000173506.8	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	22.2640405137971	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCCAGGAGGGAAAGGGC	NA	False	NA	-87	True	AATGAA	-27	NA	112263751	112349605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227_112348320_112349106
ES_00055528	chr8	+	2186	4	FSM	ENSMUSG00000055835.11	ENSMUST00000211926.2	1409	4	0	-777	0	448	multi-exon	FALSE	canonical	3	27	junction_2	24.1430919496424	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCTAGTCACGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	112370168	112398091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_112370245_112385017_112385074_112392751_112392837_112396122
ES_00055539	chr8	+	1778	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	-10	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCAGTTCCTTTGGATG	NA	False	NA	8	True	AATAAA	-16	NA	117648468	117668242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ES_00055540	chr8	+	2497	9	FSM	ENSMUSG00000031756.6	ENSMUST00000212184.2	2497	9	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	41.5985276181742	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTCCTTTGGATGAATA	NA	False	NA	12	True	AATAAA	-20	NA	117652847	117668246	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117664014_117667182_117667310_117667573
ES_00055541	chr8	+	4888	4	FSM	ENSMUSG00000047388.11	ENSMUST00000109099.4	4877	4	-11	0	-11	0	multi-exon	FALSE	canonical	3	272	junction_2	31.5066130624456	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTGTGTGAATCTTGT	NA	False	NA	24	True	ATTAAA	-18	NA	117670120	117687184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_117670490_117679612_117679739_117681452_117681653_117682991
ES_00055544	chr8	+	3337	24	NNC	ENSMUSG00000034330.11	novel	4298	33	NA	NA	81295	0	at_least_one_novel_splicesite	TRUE	canonical	3	27	junction_1	35.9048311486207	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118306324	118361881	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_118306416_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ES_00055549	chr8	+	1926	10	FSM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	9.71571210608852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4281	False	NA	7	True	AATAAA	-12	NA	120339485	120343663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343147_120343269_120343352
ES_00055550	chr8	+	1946	10	NNC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	9.71571210608852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTAGTGGTCTGCGTGTT	4294	False	NA	3	True	AATAAA	-8	NA	120339498	120343659	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343110_120343269_120343352
ES_00055551	chr8	+	2223	8	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	14	2	intron_retention	FALSE	canonical	3	29	junction_4	5.13888735674427	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGCGTGTTGGGATG	4295	False	NA	9	True	AATAAA	-14	NA	120339499	120343665	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342247_120342349_120342580_120342671_120343269_120343352
ES_00055552	chr8	+	1367	3	FSM	ENSMUSG00000031828.10	ENSMUST00000212636.2	1354	3	-13	0	-13	0	multi-exon	FALSE	canonical	3	18	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCTTGAGGCCTCTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	120588991	120597455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120589187_120591741_120591819_120596360
ES_00055553	chr8	+	2194	5	FSM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	-19	6	-13	-6	multi-exon	FALSE	canonical	3	4	junction_3	6.86931583201704	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTATCTTGTTTGAATA	NA	False	NA	NA	False	ATTAAA	-18	NA	120588991	120603728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120589187_120591741_120591819_120596360_120597432_120601113_120601272_120603035
ES_00055554	chr8	+	3296	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	430	0	-24	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGTGTTTCTTGGT	8803	False	NA	34	True	AATAAA	-16	NA	120637528	120684294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ES_00055555	chr8	+	3298	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	-24	0	-24	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8803	False	NA	39	True	AATAAA	-21	NA	120637528	120684299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ES_00055557	chr8	+	681	4	FSM	ENSMUSG00000031826.21	ENSMUST00000125066.2	747	4	0	66	0	-66	multi-exon	FALSE	canonical	3	1334	junction_1	47.7097707207048	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGCCACCACTGCCCCG	2405	False	NA	NA	False	NA	NA	NA	120675152	120679076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120675213_120675417_120675522_120677097_120677198_120678659
ES_00055558	chr8	+	717	2	FSM	ENSMUSG00000031826.21	ENSMUST00000148767.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGAGAAGCTGCCCCCTG	6643	False	NA	NA	False	NA	NA	NA	120679390	120681550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_120680085_120681527
ES_00055561	chr8	+	7127	16	FSM	ENSMUSG00000031822.21	ENSMUST00000034279.16	7127	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCTTTTTGTATCACCA	NA	False	NA	21	True	AATAAA	-28	NA	121215185	121308129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_121215891_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ES_00055563	chr8	+	6620	16	FSM	ENSMUSG00000031822.21	ENSMUST00000120493.8	4610	16	-100	-1910	-100	0	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCTTTTTGTATCACCA	NA	False	NA	21	True	AATAAA	-28	NA	121262495	121308129	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_121262694_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ES_00055564	chr8	+	4492	16	FSM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	22.7797180745407	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTACTTTAATTATTGT	NA	False	NA	13	True	ATTAAA	-19	NA	121264167	121306065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_121264302_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ES_00055571	chr8	+	406	1	FSM	ENSMUSG00000097987.2	ENSMUST00000182000.2	427	1	79	-58	79	58	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCATGTCCATAGAGTCA	1328	False	NA	NA	False	AATAAA	-31	NA	122308582	122308988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_122308600_122309000
ES_00055575	chr8	+	2289	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677230	122752916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ES_00055576	chr8	+	5457	14	FSM	ENSMUSG00000025316.17	ENSMUST00000170857.8	5444	14	-13	0	-13	0	multi-exon	FALSE	non_canonical	0	0	junction_9	67.0446287820338	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGTCTGTCTTGATGG	NA	False	NA	5	True	AATAAA	-19	NA	122677269	122755997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ES_00055577	chr8	+	2311	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCCACAGAGGCTCAGTG	NA	False	NA	1	True	AATAAA	-9	NA	122677319	122752910	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ES_00055578	chr8	+	2070	12	NIC	ENSMUSG00000025316.17	novel	2289	13	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	73.218342099741	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGAGGCTCAGTGTTGT	NA	False	NA	5	True	AATAAA	-13	NA	122677321	122752914	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122750741_122750886_122752302
ES_00055583	chr8	+	3704	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	0	1	0	0	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCTGGTCCTGGTAATG	939	False	NA	14	True	AATAAA	-15	NA	123103381	123144098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ES_00055584	chr8	+	3817	20	NNC	ENSMUSG00000017478.16	novel	3810	19	NA	NA	0	55666	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	90.0814036290421	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGAGGGTGGTGGACCC	939	False	NA	NA	False	NA	NA	NA	123103381	123199765	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431_123114504_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214_123144099_123199724
ES_00055585	chr8	+	4461	8	FSM	ENSMUSG00000017478.16	ENSMUST00000177123.2	4789	8	328	0	153	0	multi-exon	FALSE	canonical	3	228	junction_2	32.8801161922571	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCTGGTCCTGGTAATG	NA	False	NA	14	True	AATAAA	-15	NA	123134909	123144098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ES_00055590	chr8	+	2707	9	FSM	ENSMUSG00000006585.4	ENSMUST00000212967.2	2696	9	-11	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	70.7626976238187	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGACTGTCTCTGATCATG	2586	False	NA	NA	False	NA	NA	NA	123294753	123300293	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
ES_00055592	chr8	+	220	2	Intergenic	novelGene_4024	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCGTCAGCTTTTCATGTG	991	False	NA	NA	False	NA	NA	NA	123333853	123343902	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_123333899_123343727
ES_00055594	chr8	+	645	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	-42	1056	-36	-1056	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCAGCAGAGAGGGCTCA	5480	False	NA	39	True	ACTAAA	-31	NA	123338342	123342343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
ES_00055603	chr8	+	715	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	47	-1	at_least_one_novel_splicesite	FALSE	canonical	3	503	junction_1	9021.70151578958	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAAAGCAAAAGCTGGG	NA	False	NA	3	True	AATAAA	-4	NA	123829135	123831969	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_123829185_123829395_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ES_00055604	chr8	+	1969	3	FSM	ENSMUSG00000000740.13	ENSMUST00000129311.2	1969	3	0	0	0	0	multi-exon	FALSE	canonical	3	21322	junction_2	2171	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829391	123831983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123829502_123829583_123830096_123830636
ES_00055606	chr8	+	1115	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATGGTGGTGTGTCT	3328	False	NA	1	True	NA	NA	NA	123899583	123905504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123899783_123904588
ES_00055613	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2149	False	NA	10	True	GATAAA	-11	NA	123951604	123958989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ES_00055615	chr8	+	202	2	Antisense	novelGene_ENSMUSG00000032815.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	173	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGATGTAGCTCATACA	NA	False	NA	NA	False	NA	NA	NA	123967737	124048354	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_123967792_124048206
ES_00055618	chr8	+	2739	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	-1	0	0	0	multi-exon	TRUE	canonical	3	157	junction_17	92.4052680533628	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATTGTCC	NA	False	NA	NA	False	NA	NA	NA	124100561	124128631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
ES_00055620	chr8	+	2582	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_17	99.4416940675849	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100561	124130545	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
ES_00055621	chr8	+	5002	17	FSM	ENSMUSG00000001472.18	ENSMUST00000211932.2	5002	17	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_12	41.7738984744062	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACATGGTGATATGGCC	NA	False	NA	12	True	AAGAAA	-17	NA	124100594	124130549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363
ES_00055623	chr8	+	3224	13	FSM	ENSMUSG00000001482.16	ENSMUST00000001522.10	3214	13	-18	8	-18	0	multi-exon	FALSE	canonical	3	16	junction_1	97.6160278278567	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124169706	124190001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124169791_124172836_124172924_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ES_00055628	chr8	+	3432	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	-241	0	55	0	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124169805	124190001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ES_00055629	chr8	+	1475	12	NNC	ENSMUSG00000001482.16	novel	589	4	NA	NA	-97	-17	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_11	105.427504369998	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTTTTAAGTCTAGT	NA	False	NA	NA	False	NA	NA	NA	124173823	124187237	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_124173893_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124187085
ES_00055640	chr8	+	6103	10	NIC	ENSMUSG00000031976.15	novel	6073	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	31.2552217859494	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTATTCTGCTGGGTAG	NA	False	NA	21	True	AATAAA	-25	NA	124748230	124775244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
ES_00055641	chr8	+	5818	9	FSM	ENSMUSG00000031976.15	ENSMUST00000034457.9	5853	9	35	0	35	0	multi-exon	FALSE	canonical	3	115	junction_1	25.7533371623951	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTATTCTGCTGGGTAG	NA	False	NA	21	True	AATAAA	-25	NA	124750167	124775244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
ES_00055647	chr8	+	2779	4	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	3097	0	intron_retention	FALSE	canonical	3	31	junction_2	34.2442209236342	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125451994	125460862	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_125452115_125455067_125455222_125457577_125457756_125458535
ES_00055648	chr8	+	4917	3	FSM	ENSMUSG00000031982.6	ENSMUST00000212959.2	937	3	-2452	-1528	-2452	0	multi-exon	FALSE	canonical	3	114	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCCCTTATAGGAATGA	NA	False	NA	NA	False	NA	NA	NA	125452689	125460695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_125455222_125457530_125457756_125458535
ES_00055656	chr8	+	2370	7	NNC	ENSMUSG00000056820.8	novel	2391	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	3	186	junction_6	94.8958493413817	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCCTCTGGTTAAGCT	5194	False	NA	8	True	AATAAA	-13	NA	125739735	125760930	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235_125760181_125760200
ES_00055660	chr8	+	1519	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	-22	0	13	0	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	False	NA	NA	False	ACTAAA	-15	NA	126460954	126465918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
ES_00055661	chr8	+	1122	5	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	25.0499500997507	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460969	126474974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126471974_126472185_126474436
ES_00055663	chr8	+	1471	4	NNC	ENSMUSG00000031851.15	novel	1497	4	NA	NA	24	3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	41.9602986961088	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTCTAATTAGTTTATTC	NA	False	NA	NA	False	ACTAAA	-18	NA	126461000	126465921	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126464793
ES_00055664	chr8	+	296	2	Intergenic	novelGene_4027	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	0	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGTCTCGACTCATTA	NA	False	NA	NA	False	NA	NA	NA	126687039	126691426	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_126687171_126691261
ES_00055669	chr8	+	4696	16	FSM	ENSMUSG00000025812.19	ENSMUST00000162907.8	4682	16	-14	0	0	0	multi-exon	FALSE	canonical	3	39	junction_15	26.9315180906437	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTTTGTATGTATTGT	NA	False	NA	NA	False	AATAAA	-13	NA	127790805	128129058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128126878
ES_00055670	chr8	+	5815	25	FSM	ENSMUSG00000025812.19	ENSMUST00000160272.8	5815	25	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_17	33.9451917311814	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTCTCTAGTTTT	NA	False	NA	13	True	AATAAA	-21	NA	127790805	128338767	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ES_00055678	chr8	+	371	4	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	0	-270	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	15.5777619273972	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAGAGAAACCCTATG	NA	False	NA	NA	False	NA	NA	NA	129990121	130009055	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956
ES_00055679	chr8	+	1134	4	FSM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	15.5777619273972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGATCAGTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	129990121	130009325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_129990206_130007503_130007631_130007817_130007879_130008463
ES_00055680	chr8	-	672	5	FSM	ENSMUSG00000005534.11	ENSMUST00000207100.2	672	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCCACAAGTCAGGAGGA	9948	False	NA	NA	False	NA	NA	NA	3242717	3224794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3224889_3231701_3231738_3234950_3235153_3239124_3239293_3242545
ES_00055681	chr8	-	1805	6	ISM	ENSMUSG00000005534.11	ENSMUST00000091291.5	9355	21	70	47236	4	12943	5prime_fragment	FALSE	canonical	3	32	junction_4	8.40476055578028	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTCTGAAATTCACAAGAT	NA	False	NA	NA	False	NA	NA	NA	3329547	3248157	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_3248276_3252889_3253035_3254629_3254779_3261378_3261701_3308382_3308935_3329028
ES_00055683	chr8	-	2850	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	35	-15	0	15	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGTGTGTGAAGG	NA	False	NA	NA	False	AATAAA	-32	NA	3517645	3507089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
ES_00055684	chr8	-	840	6	NIC	ENSMUSG00000069633.13	novel	2870	5	NA	NA	16	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	10.1980390271856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	3517629	3507106	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_3507310_3509286_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
ES_00055685	chr8	-	504	1	FSM	ENSMUSG00000066902.8	ENSMUST00000146939.2	432	1	-21	-51	-21	51	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTTATTAGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-24	NA	3634251	3633747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3633700_3634300
ES_00055686	chr8	-	4409	18	FSM	ENSMUSG00000019470.13	ENSMUST00000163038.8	4409	18	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_11	45.4063544476041	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGGTTCCTTGTATAGC	1022	False	NA	NA	False	GATAAA	-15	NA	3671305	3658420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
ES_00055687	chr8	-	2677	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1011	False	NA	-4	True	AATACA	-16	NA	3671316	3660086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
ES_00055689	chr8	-	422	3	FSM	ENSMUSG00000004630.19	ENSMUST00000142431.8	524	3	102	0	102	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGAGTTGAGTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	3674900	3673376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3673559_3674507_3674633_3674785
ES_00055690	chr8	-	385	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	7	0	7	0	multi-exon	FALSE	canonical	3	78	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGATGTCTTTCTAT	NA	False	NA	-4	True	AATACA	-15	NA	3722355	3721187	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3721397_3722179
ES_00055691	chr8	-	2027	10	FSM	ENSMUSG00000065987.13	ENSMUST00000084086.9	2039	10	14	-2	-6	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGGAAGAGAAATGGATTA	NA	False	NA	NA	False	NA	NA	NA	3976819	3967654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3968828_3969949_3970060_3971339_3971492_3971982_3972070_3973294_3973382_3974209_3974297_3975354_3975436_3975936_3976027_3976551_3976639_3976746
ES_00055692	chr8	-	301	1	FSM	ENSMUSG00000109255.2	ENSMUST00000208301.2	568	1	89	178	89	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAGCATATTACTCCAG	NA	False	NA	NA	False	NA	NA	NA	4090332	4090031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4090000_4090300
ES_00055693	chr8	-	1203	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	0	9	0	-9	multi-exon	FALSE	canonical	3	15	junction_1	0	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAGCAGATTGCTGAGT	NA	False	NA	-25	True	AATAAA	-25	NA	4309274	4307668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4308648_4309050
ES_00055694	chr8	-	3053	12	FSM	ENSMUSG00000002949.16	ENSMUST00000149827.8	3041	12	0	-12	0	12	multi-exon	FALSE	canonical	3	458	junction_4	34.7196564708602	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTACCTCTCTGCTG	NA	False	NA	-1	True	AATAAA	-34	NA	4325885	4309718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ES_00055695	chr8	-	1802	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	0	-12	0	12	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTACCTCTCTGCTG	NA	False	NA	-1	True	AATAAA	-34	NA	4325913	4309718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ES_00055696	chr8	-	904	6	FSM	ENSMUSG00000002949.16	ENSMUST00000160549.2	904	6	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_5	26.8670802284134	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCCTGGGCTGACCTCTG	NA	False	NA	NA	False	NA	NA	NA	4325873	4317401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ES_00055697	chr8	-	444	5	FSM	ENSMUSG00000002949.16	ENSMUST00000160371.9	444	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	233.468814834016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTCAGTGTCCAAGAGCG	NA	False	NA	NA	False	NA	NA	NA	4325849	4317927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4318017_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ES_00055698	chr8	-	5450	8	NNC	ENSMUSG00000040028.11	novel	5743	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	192	junction_6	671.222856023973	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATCCCATTGTGTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	4375086	4335381	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4362556_4362615_4374885_4375006_4375029
ES_00055699	chr8	-	5743	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	0	0	0	0	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATCCCATTGTGTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	4375413	4335381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
ES_00055701	chr8	-	2431	7	NNC	ENSMUSG00000040028.11	novel	5743	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	849	junction_6	323.926260470222	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTTGTTTTTTGTT	NA	False	NA	-1	True	ATTAAA	-21	NA	4375086	4338342	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885_4375006_4375029
ES_00055702	chr8	-	222	1	Intergenic	novelGene_3851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAACATCATGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	4405236	4405014	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_4405000_4405200
ES_00055703	chr8	-	203	1	Intergenic	novelGene_3852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	317	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAACCACAGAAGCAAGGG	NA	False	NA	NA	False	AAAAAG	-2	NA	4432539	4432336	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_4432300_4432500
ES_00055704	chr8	-	2156	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	-5	True	TATAAA	-15	NA	4829554	4785975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
ES_00055706	chr8	-	4777	5	FSM	ENSMUSG00000001300.17	ENSMUST00000001319.15	4793	5	17	-1	14	1	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTTCAAAGTATTTTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	8711225	8667432	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_8670977_8672330_8672445_8673147_8673241_8689205_8689490_8710483
ES_00055707	chr8	-	3198	4	FSM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	0	-1	0	1	multi-exon	FALSE	canonical	3	754	junction_2	83.8424448328861	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTGTGAGGACTCTTT	5255	False	NA	NA	False	TATAAA	-17	NA	8740521	8715073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_8717417_8731383_8731468_8733747_8733974_8739976
ES_00055708	chr8	-	5061	3	FSM	ENSMUSG00000040459.12	ENSMUST00000208252.2	3559	3	0	-1502	0	1	multi-exon	FALSE	canonical	3	891	junction_2	32	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTGTGAGGACTCTTT	5672	False	NA	NA	False	TATAAA	-17	NA	8740104	8715073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_8717417_8731383_8733974_8739976
ES_00055709	chr8	-	970	5	FSM	ENSMUSG00000040459.12	ENSMUST00000207817.2	970	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	454.344789229501	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATGTTGAAGTGGTTT	5465	False	NA	-5	True	AAGAAA	-23	NA	8740311	8717199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_8717417_8731383_8731468_8731840_8731949_8733747_8733974_8739976
ES_00055710	chr8	-	2196	2	NNC	ENSMUSG00000038894.8	novel	6323	2	NA	NA	21616	15013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAAAATGTCTT	NA	False	NA	NA	False	NA	NA	NA	11036842	11019667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_11019702_11034680
ES_00055711	chr8	-	6659	52	FSM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	-58	14	-58	-6	multi-exon	FALSE	canonical	3	33	junction_49	11.4163456879082	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCATACCTTAGATCAT	NA	False	NA	NA	False	AATAAA	-12	NA	11362884	11248436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981_11271096_11271288_11271440_11272195_11272294_11272998_11273104_11273575_11273669_11276324_11276494_11276949_11277142_11281397_11281469_11281946_11282031_11283827_11283924_11285094_11285260_11286051_11286088_11286425_11286511_11287844_11287887_11288997_11289052_11289133_11289179_11289826_11289878_11290040_11290068_11291121_11291209_11292172_11292215_11292781_11292818_11294340_11294404_11294485_11294570_11295057_11295085_11295210_11295265_11295736_11295800_11295892_11295938_11296862_11296908_11297005_11297096_11317596_11317657_11362515
ES_00055712	chr8	-	1265	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	103	24	103	-24	multi-exon	FALSE	canonical	1	4	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAAAAGGATTTGGGG	NA	False	NA	NA	False	NA	NA	NA	11528607	11503541	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11504527_11528327
ES_00055713	chr8	-	1938	14	NIC	ENSMUSG00000056228.11	novel	1902	15	NA	NA	0	177	combination_of_known_splicesites	FALSE	canonical	2	15	junction_2	57.2102941041146	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCAGCAGGCAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	11600744	11563799	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_11564192_11564492_11564700_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ES_00055714	chr8	-	1808	15	NIC	ENSMUSG00000056228.11	novel	1902	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	153	junction_9	26.6340468006571	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTGGAAGATTAACTGT	NA	False	NA	-16	True	AGTAAA	-36	NA	11600692	11563976	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ES_00055715	chr8	-	1880	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	22	0	5	0	multi-exon	FALSE	canonical	3	35	junction_9	50.1547096288991	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTGGAAGATTAACTGT	NA	False	NA	-16	True	AGTAAA	-36	NA	11600761	11563976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ES_00055716	chr8	-	1375	10	FSM	ENSMUSG00000056228.11	ENSMUST00000209218.2	1375	10	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_1	59.3585048562161	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAAGACATGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	11600744	11571852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11572219_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ES_00055717	chr8	-	827	4	FSM	ENSMUSG00000056228.11	ENSMUST00000210845.2	826	4	0	-1	0	1	multi-exon	FALSE	canonical	3	13	junction_1	105.379736614251	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCAGCCTGTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	11600744	11596675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11597088_11597726_11597845_11600257_11600309_11600498
ES_00055718	chr8	-	2297	7	NNC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	18	30868	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.743178255835	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAGAAAACTCAA	NA	False	NA	NA	False	NA	NA	NA	11685736	11630714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_11630744_11661582_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ES_00055719	chr8	-	2409	8	NNC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	18	30868	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.832167695017	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAGAAAACTCAA	NA	False	NA	NA	False	NA	NA	NA	11685736	11630714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_11630744_11661582_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
ES_00055720	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
ES_00055721	chr8	-	5156	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685757	11661582	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ES_00055722	chr8	-	2629	4	FSM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	0	-4	0	2	multi-exon	FALSE	canonical	3	89	junction_3	197.973623383408	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	4115	False	NA	0	True	AATAAA	-17	NA	11674626	11661580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696
ES_00055723	chr8	-	2288	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	0	-3	0	2	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685754	11661580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ES_00055724	chr8	-	6905	3	ISM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	119	0	119	0	intron_retention	FALSE	canonical	3	454	junction_1	47	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCTGTCTCTGAAACTG	4234	False	NA	-4	True	AATAAA	-13	NA	11674507	11661584	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_11662948_11665814_11665911_11669061
ES_00055727	chr8	-	777	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3540	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTATCTGATAGGGCTGT	NA	False	NA	-10	True	AATAAA	-20	NA	11716144	11705479	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
ES_00055728	chr8	-	855	1	FSM	ENSMUSG00000109933.2	ENSMUST00000209657.2	785	1	-2	-68	-2	68	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAACCCAACTTCCACCC	NA	False	NA	NA	False	AATAAA	-40	NA	11734245	11733390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11733400_11734200
ES_00055729	chr8	-	2025	8	FSM	ENSMUSG00000000759.15	ENSMUST00000168657.8	2018	8	0	-7	0	5	multi-exon	TRUE	canonical	3	166	junction_7	6.31809839642742	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGTTTCTGAATAGTC	NA	False	NA	6	True	ATTAAA	-23	NA	12687982	12664271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666
ES_00055730	chr8	-	3739	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	56	2	56	0	multi-exon	FALSE	canonical	3	142	junction_11	12.9206544206397	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	False	NA	-1	True	ATTAAA	-16	NA	12722192	12664278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
ES_00055731	chr8	-	2977	15	FSM	ENSMUSG00000000759.15	ENSMUST00000164971.8	2977	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_9	13.5111443041721	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTTTTTAACTCCTGTT	NA	False	NA	NA	False	AAAAAG	-19	NA	12707620	12671798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445
ES_00055732	chr8	-	458	3	FSM	ENSMUSG00000000759.15	ENSMUST00000165321.2	458	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	70.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAAAGTGGAAGCGAAGG	NA	False	NA	NA	False	AAAACA	-26	NA	12707634	12704252	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_12704353_12705805_12705975_12707445
ES_00055733	chr8	-	2223	14	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	192	junction_10	39.7682636394828	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13154822	13127188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145871_13147600_13147669_13148562_13148637_13150324_13150415_13154774
ES_00055734	chr8	-	2860	14	FSM	ENSMUSG00000038542.15	ENSMUST00000164416.8	2860	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.1979915149282	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13155459	13127188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147602_13147669_13148562_13148637_13150324_13150415_13154774
ES_00055735	chr8	-	212	1	Intergenic	novelGene_3868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13203372	13203160	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_13203200_13203400
ES_00055736	chr8	-	1949	8	FSM	ENSMUSG00000038515.11	ENSMUST00000210317.2	3013	8	3	1061	0	647	multi-exon	FALSE	canonical	3	341	junction_2	30.9812319750826	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTACCTGGAGATGGCT	3640	False	NA	NA	False	NA	NA	NA	13250617	13226222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ES_00055738	chr8	-	3032	7	FSM	ENSMUSG00000038506.14	ENSMUST00000045366.10	2748	7	-284	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	9.7082439194738	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13338125	13305963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ES_00055740	chr8	-	2852	5	FSM	ENSMUSG00000038506.14	ENSMUST00000110840.8	2853	5	0	1	0	0	multi-exon	FALSE	canonical	3	21	junction_1	12.0701077045733	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13338125	13305963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13307977_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ES_00055741	chr8	-	2956	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110838.8	2955	6	0	-1	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.5558105622644	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	-2	True	AATAAA	-15	NA	13338131	13305962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ES_00055742	chr8	-	2548	15	FSM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	9.27719389312373	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTTGGTCACTGTCT	5760	False	NA	1	True	AATAAA	-23	NA	13544490	13515373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673_13533737_13535670_13535696_13543845_13544013_13544260
ES_00055743	chr8	-	4517	24	FSM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	120	-233	0	233	multi-exon	FALSE	canonical	3	46	junction_3	7.20402114134286	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGGAAGCAAAACAACAAAC	NA	False	NA	NA	False	NA	NA	NA	13727483	13616714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13618767_13620238_13620423_13626336_13626441_13627359_13627569_13627806_13627890_13628607_13628715_13630033_13630108_13631250_13631329_13632298_13632377_13633749_13633857_13634912_13635037_13635673_13635749_13636873_13636989_13637951_13638101_13638863_13639021_13640201_13640307_13642003_13642081_13645334_13645408_13645808_13645890_13648213_13648291_13655861_13655957_13664533_13664638_13681774_13681893_13727392
ES_00055744	chr8	-	1617	1	FSM	ENSMUSG00000109617.2	ENSMUST00000210184.2	1603	1	58	-72	58	72	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAATCGCAGAACCAGG	NA	False	NA	NA	False	AAGAAA	-26	NA	13797420	13795803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13795800_13797400
ES_00055745	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ES_00055746	chr8	-	482	2	FSM	ENSMUSG00000031458.9	ENSMUST00000210749.2	482	2	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTTATCTTTAAAGTAGG	NA	False	NA	NA	False	NA	NA	NA	13940281	13937459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13937827_13940166
ES_00055747	chr8	-	2463	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_2	12.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4780	False	NA	-4	True	ATTAAA	-18	NA	14024777	14002007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_14004136_14005719_14005818_14024540
ES_00055748	chr8	-	2478	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	0	-2105	0	0	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4525	False	NA	-4	True	ATTAAA	-18	NA	14025032	14002007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
ES_00055750	chr8	-	1557	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ES_00055751	chr8	-	1602	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-7	-4	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTATCATATTTGTGATAA	NA	False	NA	-10	True	AATAAA	-14	NA	14140286	14077564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
ES_00055752	chr8	-	314	1	Intergenic	novelGene_3879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTGTATCTGGCTTAA	NA	False	NA	NA	False	NA	NA	NA	15811138	15810824	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_15810800_15811100
ES_00055753	chr8	-	2838	7	FSM	ENSMUSG00000039814.16	ENSMUST00000095438.10	2838	7	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_4	7.05730511991338	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTGTTAGTATCTA	NA	False	NA	-3	True	NA	NA	NA	19000991	18982744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
ES_00055754	chr8	-	3163	7	FSM	ENSMUSG00000039814.16	ENSMUST00000055503.12	3176	7	14	-1	14	1	multi-exon	TRUE	canonical	1	1	junction_6	13.3998341614945	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTAGTGTTAGTATCTAA	NA	False	NA	-2	True	NA	NA	NA	19000975	18982743	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000551
ES_00055755	chr8	-	269	1	FSM	ENSMUSG00000095766.3	ENSMUST00000178899.3	794	1	631	-106	631	106	mono-exon	FALSE	NA	NA	NA	NA	NA	383	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGGATCAGGGGTCAGAA	NA	False	NA	NA	False	NA	NA	NA	21096871	21096602	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_21096600_21096900
ES_00055756	chr8	-	5736	1	FSM	ENSMUSG00000093800.3	ENSMUST00000180355.3	5838	1	114	-12	114	12	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGCTTCACCAGGGCCC	NA	False	NA	NA	False	NA	NA	NA	21378102	21372366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_21372400_21378100
ES_00055757	chr8	-	2021	16	FSM	ENSMUSG00000031478.17	ENSMUST00000033865.16	2021	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_15	6.34350061086148	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656428	22618298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622210_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
ES_00055758	chr8	-	2037	16	FSM	ENSMUSG00000031478.17	ENSMUST00000110730.10	2050	16	13	0	-10	0	multi-exon	FALSE	canonical	1	3	junction_4	9.555917305814	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656438	22618298	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622216_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
ES_00055759	chr8	-	2609	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	0	-16	0	16	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTTTACCTAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	22675835	22658159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
ES_00055760	chr8	-	683	2	FSM	ENSMUSG00000037725.9	ENSMUST00000211045.2	683	2	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTTAGAAAATAGATACC	5785	False	NA	NA	False	NA	NA	NA	22665882	22664616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22665188_22665770
ES_00055761	chr8	-	3434	7	NNC	ENSMUSG00000031482.10	novel	3430	7	NA	NA	425	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	86.8192566965033	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888135	22865566	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22887973
ES_00055762	chr8	-	3432	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	0	-2	0	2	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTCTGGTCGTAGTGTCT	NA	False	NA	-4	True	NA	NA	NA	22888613	22865564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
ES_00055763	chr8	-	3287	7	NNC	ENSMUSG00000031482.10	novel	3430	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	87.5893194909567	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888613	22865566	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879972_22880089_22885728_22885844_22888455
ES_00055764	chr8	-	1437	5	FSM	ENSMUSG00000031534.16	ENSMUST00000163774.3	1435	5	0	-2	0	2	multi-exon	FALSE	canonical	2	4	junction_3	90.5993929339485	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGCATCATTTTGTAC	NA	False	NA	2	True	NA	NA	NA	22966871	22952627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22964431_22964491_22966521
ES_00055765	chr8	-	1405	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	0	-3	0	2	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGCATCATTTTGTAC	NA	False	NA	2	True	NA	NA	NA	22966898	22952627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
ES_00055766	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	-11	True	AATAAA	-22	NA	23083774	23067101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ES_00055768	chr8	-	1214	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	-13	0	13	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAATTTAGTTATG	NA	False	NA	NA	False	AATAAA	-33	NA	23143434	23118128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
ES_00055769	chr8	-	3580	22	FSM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	18.670796433355	2811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196594	23149227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00055770	chr8	-	4469	21	FSM	ENSMUSG00000031537.16	ENSMUST00000063401.10	3977	21	64	-556	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.2802794816305	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196541	23149227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00055771	chr8	-	4845	20	FSM	ENSMUSG00000031537.16	ENSMUST00000146212.8	4845	20	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	17.3881865204775	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGATGTTCTGGTATCTCCA	NA	False	NA	NA	False	NA	NA	NA	23196594	23150372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00055772	chr8	-	3587	8	FSM	ENSMUSG00000031537.16	ENSMUST00000150259.8	3587	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	13.3064354539372	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	23196556	23165999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00055773	chr8	-	846	8	NNC	ENSMUSG00000031537.16	novel	1106	7	NA	NA	-6	91	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.291044405091	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCGCATTGTGTCTAAGG	NA	False	NA	NA	False	ATTAAA	-9	NA	23196562	23171136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_23171321_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00055774	chr8	-	600	3	FSM	ENSMUSG00000031537.16	ENSMUST00000150214.2	601	3	-18	19	-3	-19	multi-exon	FALSE	canonical	3	15	junction_1	54.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTTTTTAAAGAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	23196559	23192486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23192890_23196097_23196221_23196485
ES_00055775	chr8	-	3375	9	FSM	ENSMUSG00000031539.7	ENSMUST00000210656.2	3373	9	0	-2	0	2	multi-exon	FALSE	canonical	3	19	junction_1	1.96452920568771	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTCTGGTTACTGAGAC	NA	False	NA	1	True	AATAAA	-20	NA	23295638	23277367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
ES_00055776	chr8	-	3417	9	FSM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	7.29618907375624	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295620	23277369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295529
ES_00055777	chr8	-	5518	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTTGATTTATTAAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	23698362	23661280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
ES_00055778	chr8	-	2730	8	ISM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	26930	1784	-979	-1784	3prime_fragment	FALSE	canonical	3	235	junction_3	12.6248863401633	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAACACTTTTTCAAATA	NA	False	NA	NA	False	NA	NA	NA	23671432	23663064	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875
ES_00055779	chr8	-	887	3	FSM	ENSMUSG00000031545.7	ENSMUST00000210782.2	887	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	6	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCCTTTTGGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	23670243	23668812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23669517_23669784_23669841_23670116
ES_00055780	chr8	-	2316	7	FSM	ENSMUSG00000031545.7	ENSMUST00000211260.2	2316	7	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	17.4992063312089	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGGGGGAGTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	23698361	23669986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
ES_00055781	chr8	-	1349	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCAAATGTCTTTTTTT	NA	False	NA	-22	True	AAAACA	-3	NA	23727675	23716631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
ES_00055782	chr8	-	1987	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	-42	0	35	multi-exon	TRUE	canonical	3	1223	junction_2	41.2946727799119	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGCTATGGCATCTTAT	NA	False	NA	16	True	AATAAA	-36	NA	23747037	23731326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
ES_00055783	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	715	junction_5	234.329170185873	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747090	23731361	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ES_00055785	chr8	-	699	3	FSM	ENSMUSG00000031549.17	ENSMUST00000138335.2	849	3	150	0	150	0	multi-exon	TRUE	canonical	3	3	junction_2	2	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCCAGCATCTTAGTGC	8303	False	NA	NA	False	NA	NA	NA	25030662	25023471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25023969_25025157_25025307_25030609
ES_00055786	chr8	-	3985	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	31.0462313449736	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	False	NA	NA	False	AATAAA	-35	NA	25506938	25439626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ES_00055787	chr8	-	4044	22	FSM	ENSMUSG00000031555.16	ENSMUST00000208247.3	4044	22	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_13	16.431400722556	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	False	NA	NA	False	AATAAA	-35	NA	25506943	25439626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25441027_25445947_25446016_25452875_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ES_00055788	chr8	-	3860	22	NNC	ENSMUSG00000031555.16	novel	3834	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	31.0462313449736	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAACATTTACAAC	NA	False	NA	NA	False	TTTAAA	-30	NA	25506828	25439668	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_25441027_25445947_25446016_25452902_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ES_00055792	chr8	-	5176	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTGTGTTTTCCTG	9688	False	NA	NA	False	AATAAA	-19	NA	25592392	25529159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
ES_00055793	chr8	-	3943	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	-480	0	-89	0	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAACTTTTGTGTGTTT	9599	False	NA	20	True	NA	NA	NA	25592481	25530855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
ES_00055794	chr8	-	6478	11	FSM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	0	-7	0	7	multi-exon	TRUE	canonical	0	0	junction_10	23.6550206087418	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTCTTCCCTGGCCG	NA	False	NA	7	True	AATAAA	-28	NA	25691465	25644560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25691137
ES_00055795	chr8	-	7795	13	FSM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	0	-7	0	7	multi-exon	FALSE	canonical	0	0	junction_12	24.1986856851542	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTCTTCCCTGGCCG	NA	False	NA	7	True	AATAAA	-28	NA	25691558	25644560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838_25672947_25690106_25690223_25691137
ES_00055796	chr8	-	6307	11	NIC	ENSMUSG00000065954.12	novel	6471	11	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	20.3492014585339	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGGGTGTGTTGTCTTCC	NA	False	NA	0	True	AATAAA	-21	NA	25730973	25644567	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
ES_00055797	chr8	-	1829	3	ISM	ENSMUSG00000065954.12	ENSMUST00000211622.2	1661	9	5	13972	5	981	5prime_fragment	FALSE	canonical	0	0	junction_2	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTTTTCAGAAATCCTT	NA	False	NA	NA	False	AATAAA	-14	NA	25691460	25671556	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_25672947_25690106_25690223_25691137
ES_00055799	chr8	-	590	1	FSM	ENSMUSG00000037363.10	ENSMUST00000209734.2	1063	1	537	-64	68	64	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCTTGGAGTTTCCCA	2911	False	NA	NA	False	NA	NA	NA	26086967	26086377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26086400_26087000
ES_00055800	chr8	-	4418	18	FSM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	-172	0	-39	0	multi-exon	FALSE	canonical	3	20	junction_17	11.1150012413475	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGGCCTTATCTATC	NA	False	NA	-3	True	AATAAA	-22	NA	26244480	26215372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244212
ES_00055801	chr8	-	4272	18	NIC	ENSMUSG00000061313.11	novel	4246	18	NA	NA	24	-2	combination_of_known_junctions	FALSE	canonical	1	18	junction_17	11.4631952042464	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCATGTGGCCTTATCTA	NA	False	NA	-5	True	AATAAA	-20	NA	26244417	26215374	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
ES_00055803	chr8	-	2888	8	ISM	ENSMUSG00000061313.11	ENSMUST00000211009.3	2509	13	32	5619	32	-5619	5prime_fragment	FALSE	canonical	1	18	junction_7	15.0983172464175	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGATATCCCTGTTTTA	NA	False	NA	NA	False	AGTAAA	-27	NA	26244409	26229918	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
ES_00055805	chr8	-	4876	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTTTTCTCTCTAGCA	NA	False	NA	NA	False	AATAAA	-25	NA	26275315	26254565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
ES_00055807	chr8	-	3447	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	-61	-79	-61	79	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATATCTTTTTTTGCTTT	NA	False	NA	NA	False	AATATA	-40	NA	26330876	26305944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ES_00055808	chr8	-	3217	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	-880	0	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAATGTTTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	26337722	26306023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ES_00055811	chr8	-	3058	18	FSM	ENSMUSG00000037260.9	ENSMUST00000037609.8	2694	18	27	-391	27	391	multi-exon	TRUE	canonical	3	85	junction_10	15.0390495171943	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTACAGACGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	26466754	26434089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26435344_26436263_26436377_26436474_26436546_26437961_26438040_26441996_26442084_26443308_26443436_26444633_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390_26458461_26461074_26461197_26461593_26461731_26462869_26462986_26466552
ES_00055812	chr8	-	1671	10	NNC	ENSMUSG00000015994.11	novel	1930	9	NA	NA	37	48139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.997614169865	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAGGAAAGGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	26505641	26440610	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26440633_26488993_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
ES_00055813	chr8	-	3613	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAATGGAATTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	26484161	26470631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
ES_00055814	chr8	-	1945	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	9	-24	9	24	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAACAAAATGGACTCAAG	NA	False	NA	NA	False	ATTAAA	-29	NA	26505669	26488725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
ES_00055815	chr8	-	12836	22	FSM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	10.5632744184703	594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGCTCGTTTTTTCTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	26609252	26511448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267_26534303_26538279_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
ES_00055817	chr8	-	707	1	FSM	ENSMUSG00000109640.2	ENSMUST00000210389.2	3538	1	1703	1128	1703	-1128	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGGGTTTGAGTATATGG	NA	False	NA	NA	False	NA	NA	NA	26554377	26553670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26553700_26554400
ES_00055818	chr8	-	231	2	Genic_Genomic	ENSMUSG00000110120.2	novel	1465	1	NA	NA	860	31483	multi-exon	FALSE	non_canonical	0	0	junction_1	0	187	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACTAACAAGTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	26621810	26589722	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_26589752_26621608
ES_00055819	chr8	-	230	2	Genic_Genomic	ENSMUSG00000110120.2	novel	1465	1	NA	NA	860	31483	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACTAACAAGTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	26621810	26589722	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_26589751_26621608
ES_00055820	chr8	-	229	2	Genic_Genomic	ENSMUSG00000110120.2	novel	1465	1	NA	NA	860	31483	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACTAACAAGTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	26621810	26589722	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_26589750_26621608
ES_00055821	chr8	-	1922	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	0	-23	0	23	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTTTGGCACTTCAT	NA	False	NA	-3	True	TATAAA	-19	NA	27618708	27613368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
ES_00055824	chr8	-	3217	5	FSM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	8.6421930087218	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGAGAGTCGGTCTCTC	NA	False	NA	NA	False	TTTAAA	-4	NA	27664674	27631985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254_27646698_27664236
ES_00055826	chr8	-	2901	7	Fusion	ENSMUSG00000031489.16_ENSMUSG00000109719.2	novel	2795	4	NA	NA	-256	-2097	multi-exon	FALSE	non_canonical	0	0	junction_1	43.1573348986653	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGAGTACTTGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	27740900	27660964	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_-_27660989_27715803_27716498_27716753_27716822_27717284_27718779_27719136_27719313_27739175_27739238_27740517
ES_00055827	chr8	-	695	3	FSM	ENSMUSG00000039720.8	ENSMUST00000209281.2	686	3	0	-9	0	4	multi-exon	FALSE	canonical	3	112	junction_1	2	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTATGTTCTCCTTTTCT	NA	False	NA	-3	True	AATAAA	-21	NA	27688745	27687482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27687710_27687955_27688099_27688420
ES_00055828	chr8	-	1360	9	FSM	ENSMUSG00000039720.8	ENSMUST00000038174.8	1356	9	0	-4	0	4	multi-exon	FALSE	canonical	3	68	junction_6	19.421315609402	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTATGTTCTCCTTTTCT	NA	False	NA	-3	True	AATAAA	-21	NA	27692575	27687482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399
ES_00055829	chr8	-	1408	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTCATTGCTATGTTC	NA	False	NA	-12	True	AATAAA	-12	NA	27713856	27687491	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ES_00055831	chr8	-	1835	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	12	0	intron_retention	FALSE	canonical	3	68	junction_5	20.9224759529077	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713844	27687486	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ES_00055833	chr8	-	1450	3	NNC	ENSMUSG00000031489.16	novel	669	4	NA	NA	-246	-15242	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	11.5	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATAAGACTTGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	27740890	27734505	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_27735521_27739175_27739238_27740517
ES_00055834	chr8	-	774	1	FSM	ENSMUSG00000110331.2	ENSMUST00000209275.2	551	1	1	-224	1	224	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAAGTGAGGGCG	NA	False	NA	-4	True	ATTAAA	-34	NA	29777008	29776234	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_29776200_29777000
ES_00055835	chr8	-	1923	11	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	0	98682	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	242.777449529399	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCACATTTGGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	31658791	31550808	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_31550835_31649494_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ES_00055836	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ES_00055840	chr8	-	449	1	FSM	ENSMUSG00000093862.3	ENSMUST00000178878.3	2553	1	1892	212	1892	-212	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGCTTTGAAATTTTC	NA	False	NA	NA	False	NA	NA	NA	32227896	32227447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_32227400_32227900
ES_00055841	chr8	-	1572	7	FSM	ENSMUSG00000062991.10	ENSMUST00000238826.2	1625	7	0	53	0	-23	multi-exon	FALSE	canonical	0	0	junction_2	1.86338998124982	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAACAAATAAACATCACAA	NA	False	NA	NA	False	NA	NA	NA	32499569	32327248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_32327757_32339337_32339468_32437011_32437063_32439944_32439996_32448539_32448662_32458035_32458214_32499037
ES_00055842	chr8	-	1101	1	FSM	ENSMUSG00000083557.2	ENSMUST00000119347.2	1101	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTTAGACTGAGCCACA	NA	False	NA	NA	False	NA	NA	NA	33682324	33681223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_33681200_33682300
ES_00055843	chr8	-	6347	35	NNC	ENSMUSG00000031583.14	novel	5019	34	NA	NA	0	20	at_least_one_novel_splicesite	TRUE	non_canonical	2	19	junction_1	7.797002795636	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATCTGTGTAACTGCA	NA	False	NA	NA	False	NA	NA	NA	33875536	33724391	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_33724608_33724633_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875369
ES_00055845	chr8	-	5019	34	FSM	ENSMUSG00000031583.14	ENSMUST00000033990.7	5019	34	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	7.07885533384216	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTCTTGGTAAACTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33875500	33725709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875369
ES_00055846	chr8	-	2808	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	1173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGTCAGCTTGTGAAT	4670	False	NA	NA	False	AATAAA	-21	NA	34131995	34109613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ES_00055847	chr8	-	207	2	Antisense	novelGene_ENSMUSG00000119577.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	249	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGCATCCATTAATTCCA	NA	False	NA	NA	False	NA	NA	NA	34229220	34140879	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_34141045_34229178
ES_00055849	chr8	-	2379	8	FSM	ENSMUSG00000031586.18	ENSMUST00000033994.15	2375	8	0	-4	0	0	multi-exon	FALSE	canonical	3	62	junction_3	606.753118606551	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	34419834	34272670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ES_00055850	chr8	-	2548	9	FSM	ENSMUSG00000031586.18	ENSMUST00000191473.7	2547	9	0	-1	0	0	multi-exon	FALSE	canonical	3	376	junction_1	473.977962963469	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	34419869	34272670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ES_00055851	chr8	-	2466	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	34419891	34272670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ES_00055852	chr8	-	1042	7	FSM	ENSMUSG00000031586.18	ENSMUST00000033995.14	1039	7	0	-3	0	3	multi-exon	FALSE	canonical	3	456	junction_1	404.856524654791	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACAGCGTTTTTGGTTTTT	NA	False	NA	-4	True	AATAAA	-39	NA	34419833	34293963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34294211_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ES_00055854	chr8	-	227	2	Antisense	novelGene_ENSMUSG00000054618.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTTTACATTTTCAAAGG	NA	False	NA	NA	False	NA	NA	NA	34534072	34487247	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_34487364_34533961
ES_00055855	chr8	-	788	2	Genic_Genomic	ENSMUSG00000063412.5	novel	736	1	NA	NA	0	85673	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATCGAAAGCAAACCATT	NA	False	NA	NA	False	NA	NA	NA	34578891	34492482	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_34492529_34578149
ES_00055856	chr8	-	786	2	Genic_Genomic	ENSMUSG00000063412.5	novel	736	1	NA	NA	0	85673	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATCGAAAGCAAACCATT	NA	False	NA	NA	False	NA	NA	NA	34578891	34492482	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_34492527_34578149
ES_00055858	chr8	-	996	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	260	-7	0	4	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAATTTCCATTATTA	NA	False	NA	4	True	AATAAA	-35	NA	34575690	34557569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ES_00055859	chr8	-	732	4	FSM	ENSMUSG00000031516.12	ENSMUST00000153537.2	501	4	-34	-197	25	197	multi-exon	FALSE	canonical	3	293	junction_3	45.4386032649185	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCGGGAGGAGGGAGATAA	NA	False	NA	NA	False	ATTAAA	-41	NA	34575665	34561658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34562127_34564342_34564449_34573495_34573561_34575572
ES_00055860	chr8	-	785	1	FSM	ENSMUSG00000063412.5	ENSMUST00000080152.5	736	1	0	-49	0	49	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATAGTCTCCGGTATTTG	NA	False	NA	NA	False	NA	NA	NA	34578891	34578106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34578100_34578900
ES_00055862	chr8	-	9178	27	FSM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	0	-15	0	15	multi-exon	FALSE	canonical	3	108	junction_19	17.0294297993192	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTTAAGTGTCTCCTGC	NA	False	NA	-2	True	AATAAA	-30	NA	35432844	35293598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_35298876_35301591_35301749_35305537_35305725_35306041_35306148_35307121_35307197_35308906_35309005_35310068_35310190_35314434_35314518_35315735_35315974_35316306_35316496_35318251_35318362_35318767_35318988_35320377_35320544_35323081_35323228_35324607_35324688_35328668_35328841_35334434_35334514_35334847_35334940_35336625_35336748_35340181_35340369_35340756_35340824_35342367_35342463_35356829_35356906_35357657_35357695_35385532_35385629_35407849_35408075_35432167
ES_00055864	chr8	-	3812	12	FSM	ENSMUSG00000039633.8	ENSMUST00000239119.2	3930	12	118	0	118	0	multi-exon	FALSE	canonical	3	80	junction_8	13.2583982428852	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCCCCCCCCCTTTAAAT	NA	False	NA	-2	True	AATAAA	-15	NA	36716552	36683217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_36684756_36686979_36687133_36689769_36689933_36690017_36690177_36692710_36692833_36696289_36696405_36697234_36697332_36697436_36697678_36698191_36698342_36701053_36701177_36703142_36703262_36715720
ES_00055866	chr8	-	616	3	FSM	ENSMUSG00000031523.17	ENSMUST00000145245.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTAAAAAAAAAAAATGATT	NA	False	NA	NA	False	NA	NA	NA	37081028	37060384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_37060613_37066522_37066595_37080712
ES_00055867	chr8	-	2616	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	-1	0	1	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGACTGATGGCTTT	NA	False	NA	0	True	AATAAA	-24	NA	40964795	40945579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ES_00055868	chr8	-	726	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964763	40960358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_40960690_40963055_40963268_40964580
ES_00055870	chr8	-	238	2	Genic_Genomic	ENSMUSG00000109658.2	novel	151	1	NA	NA	0	31805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGATTTGAATTTAATATA	NA	False	NA	NA	False	NA	NA	NA	41136686	41104730	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_41104774_41136491
ES_00055871	chr8	-	237	2	Genic_Genomic	ENSMUSG00000109658.2	novel	151	1	NA	NA	0	31805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGATTTGAATTTAATATA	NA	False	NA	NA	False	NA	NA	NA	41136686	41104730	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_41104773_41136491
ES_00055872	chr8	-	488	1	FSM	ENSMUSG00000110315.2	ENSMUST00000211387.2	607	1	103	16	103	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGATGATGAATAAGTTG	NA	False	NA	NA	False	NA	NA	NA	41166221	41165733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_41165700_41166200
ES_00055873	chr8	-	3329	5	ISM	ENSMUSG00000045636.17	ENSMUST00000051379.14	3964	10	41923	-135	262	1	3prime_fragment	FALSE	canonical	3	117	junction_2	6.59545297913646	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAATCTTGAGTCCTTGCT	NA	False	NA	-5	True	TATAAA	-42	NA	41452980	41443953	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679
ES_00055875	chr8	-	6364	14	NIC	ENSMUSG00000045636.17	novel	6548	14	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_13	31.6824107026122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAATCTTGAGTCCTTGCT	NA	False	NA	-5	True	TATAAA	-42	NA	41586762	41443953	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586697
ES_00055876	chr8	-	4120	10	FSM	ENSMUSG00000045636.17	ENSMUST00000051379.14	3964	10	-16	-140	-16	2	multi-exon	TRUE	canonical	3	9	junction_9	37.6133677314165	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGAGTCCTTGCTTTTGA	NA	False	NA	0	True	GATAAA	-23	NA	41494919	41443948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41494509
ES_00055879	chr8	-	930	6	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5818	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.55527776692624	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCATGGCCATGGTAATT	NA	False	NA	NA	False	AATAAA	-31	NA	41662372	41644472	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662222
ES_00055880	chr8	-	3091	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	138	-456	0	456	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	765	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGATACTCAAACTGGGTT	7639	False	NA	NA	False	NA	NA	NA	41827672	41792777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ES_00055883	chr8	-	1044	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	-5	0	5	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCGAGTCCTTTTGAAA	NA	False	NA	-2	True	AATAAA	-28	NA	41870111	41850490	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
ES_00055884	chr8	-	1158	1	FSM	ENSMUSG00000094568.2	ENSMUST00000180067.2	1077	1	-1	-80	-1	80	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATGGGGCTCAGAA	NA	False	NA	NA	False	AATGAA	-39	NA	42111707	42110549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_42110500_42111700
ES_00055886	chr8	-	1527	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38825	6	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	54.6308576927445	65	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGCTTTCTGAGCGCT	NA	False	NA	6	True	TATAAA	-25	NA	43633348	43582837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43618053_43618097_43633233
ES_00055887	chr8	-	1487	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38825	6	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_4	56.917093702644	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGCTTTCTGAGCGCT	NA	False	NA	6	True	TATAAA	-25	NA	43633348	43582837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593679_43593776_43595725_43595759_43633233
ES_00055888	chr8	-	1788	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38796	-1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_4	60.6010709139564	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43633319	43582844	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593679_43593776_43594003_43594341_43595725_43595759_43633233
ES_00055889	chr8	-	1822	2	ISM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	4268	3	-625	-3	intron_retention	FALSE	canonical	3	244	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTCTGTTTATTGCTTT	NA	False	NA	-3	True	TATAAA	-16	NA	43590255	43582846	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_43583726_43589312
ES_00055890	chr8	-	1470	6	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-3042	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	98.5746417695748	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTCTGTTTATTGCTTT	6230	False	NA	-3	True	TATAAA	-16	NA	43597565	43582846	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43595725_43595759_43597362
ES_00055891	chr8	-	1760	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38773	-3	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_5	54.8005660629188	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTCTGTTTATTGCTTT	NA	False	NA	-3	True	TATAAA	-16	NA	43633296	43582846	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
ES_00055892	chr8	-	1776	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	0	-4	0	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	1354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43760017	43748099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ES_00055893	chr8	-	984	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	1	-49	1	49	multi-exon	FALSE	canonical	3	13	junction_1	4	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTATTATTAAAATGTGT	NA	False	NA	NA	False	TTTAAA	-18	NA	45618255	45613481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_45614092_45614492_45614559_45617947
ES_00055894	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
ES_00055896	chr8	-	3445	19	FSM	ENSMUSG00000038291.17	ENSMUST00000110378.9	3445	19	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_13	6.48288344625891	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTCAAAGGTATTATATG	NA	False	NA	NA	False	AATAAA	-19	NA	46605196	46486297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098_46577184_46604818
ES_00055897	chr8	-	704	3	FSM	ENSMUSG00000038291.17	ENSMUST00000150645.3	709	3	0	5	0	-5	multi-exon	FALSE	canonical	3	57	junction_2	1.5	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGACAAATATGTGTACT	NA	False	NA	NA	False	AGTAAA	-11	NA	46558226	46532883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46533330_46556551_46556739_46558155
ES_00055899	chr8	-	1768	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	154	3	-100	-3	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGACTGAGTTTGGGCTG	NA	False	NA	NA	False	TATAAA	-10	NA	46664167	46659836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
ES_00055900	chr8	-	257	1	FSM	ENSMUSG00000071102.2	ENSMUST00000095320.2	1002	1	589	156	589	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGCGACTTCAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	46708126	46707869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46707900_46708100
ES_00055901	chr8	-	3821	15	FSM	ENSMUSG00000038225.16	ENSMUST00000211400.2	3797	15	0	-24	0	24	multi-exon	FALSE	canonical	3	14	junction_1	36.5959739059155	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCGTGTTTTTCCCTCT	NA	False	NA	14	True	AATAAA	-43	NA	47070235	47028604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ES_00055902	chr8	-	3943	14	FSM	ENSMUSG00000038225.16	ENSMUST00000136335.8	3943	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	37.9362592161327	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTGGTGTTTGTGGACT	NA	False	NA	NA	False	AATACA	-14	NA	47070235	47029196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ES_00055903	chr8	-	1860	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	0	-27	0	27	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAACATTAGAATACTTA	NA	False	NA	NA	False	CATAAA	-25	NA	47070243	47031870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ES_00055906	chr8	-	501	3	Intergenic	novelGene_3931	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_2	5	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAAATGCATGAATT	NA	False	NA	NA	False	NA	NA	NA	47790180	47788351	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_47788598_47789376_47789456_47790004
ES_00055907	chr8	-	4332	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGGTTTTCTTTTAT	4054	False	NA	3	True	AATAAA	-29	NA	47986502	47943149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
ES_00055908	chr8	-	4646	29	FSM	ENSMUSG00000038102.16	ENSMUST00000125065.8	4646	29	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_17	20.7100980988818	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCGTAAATACCTT	4051	False	NA	-11	True	AATAAA	-15	NA	47986505	47943163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
ES_00055910	chr8	-	3260	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	-431	-17	-33	17	multi-exon	FALSE	canonical	3	212	junction_1	0	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTATGATGACAGTTTT	NA	False	NA	NA	False	AATGAA	-38	NA	48128624	48120195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_48122372_48127540
ES_00055911	chr8	-	3395	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	0	-2	0	2	multi-exon	FALSE	canonical	3	65	junction_1	31	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAGATGATTGGGTAAT	NA	False	NA	NA	False	AATAAA	-20	NA	48166966	48162477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_48165330_48165922_48166054_48166554
ES_00055912	chr8	-	3365	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	0	99	0	2	multi-exon	FALSE	canonical	3	60	junction_1	33.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAGATGATTGGGTAAT	NA	False	NA	NA	False	AATAAA	-20	NA	48166967	48162477	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_48165330_48165953_48166054_48166554
ES_00055913	chr8	-	7750	23	FSM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	0	928	0	-928	multi-exon	TRUE	canonical	3	189	junction_17	22.8505746170765	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGCCGCTTCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	48443586	48277921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48309218_48309384_48311764_48311958_48316887_48316975_48317086_48317168_48317539_48317670_48321206_48321827_48322813_48322904_48328263_48328507_48331862_48331937_48333135_48333283_48336528_48336659_48340106_48340187_48352470_48352548_48353687_48353892_48373623_48373734_48443100
ES_00055914	chr8	-	2625	1	FSM	ENSMUSG00000031563.9	ENSMUST00000212282.2	5592	1	334	2633	-39	-2633	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCCTTTTTATACAAGCC	NA	False	NA	NA	False	NA	NA	NA	48443625	48441000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_48441000_48443600
ES_00055916	chr8	-	8420	26	NIC	ENSMUSG00000031561.17	novel	8961	29	NA	NA	94	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_25	16.204986886758	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGTGTGATTTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	49008254	48680716	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_48682237_48685042_48685174_48688324_48689937_48693279_48693577_48707444_48707681_48709866_48710043_48729064_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48788623_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008187
ES_00055917	chr8	-	3954	14	NIC	ENSMUSG00000031561.17	novel	8663	27	NA	NA	8	414	combination_of_known_splicesites	FALSE	canonical	2	5	junction_10	22.5144266701158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACATCGGGACCGTTGG	NA	False	NA	NA	False	NA	NA	NA	49009066	48728535	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48820345_48820469_48848470_48848710_48870042_48870281_49008912
ES_00055919	chr8	-	992	1	FSM	ENSMUSG00000052825.7	ENSMUST00000182415.2	992	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATTTGCTAATCACCATT	NA	False	NA	NA	False	NA	NA	NA	52650091	52649099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_52649100_52650100
ES_00055921	chr8	-	3475	5	NNC	ENSMUSG00000054408.10	novel	3466	5	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	non_canonical	3	952	junction_4	25.3808490795718	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTTTTTGTGAAGCTG	NA	False	NA	5	True	AGTAAA	-28	NA	54983033	54973458	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_54976431_54977975_54978092_54979485_54979561_54981374_54981451_54982797
ES_00055923	chr8	-	1796	12	NNC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	18	6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	57.4141112035121	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGCCGATTTTCTCTTC	NA	False	NA	1	True	AATAAA	-24	NA	57003860	56984550	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003230_57003579
ES_00055926	chr8	-	3298	3	ISM	ENSMUSG00000038215.16	ENSMUST00000123493.8	1204	10	9638	3	-1252	-3	intron_retention	FALSE	canonical	3	199	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTGTATATGTGCCGAT	NA	False	NA	-8	True	AATAAA	-15	NA	56988862	56984559	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_56984768_56985511_56985550_56985810
ES_00055929	chr8	-	4285	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	0	-872	0	0	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTTTCAGTGCTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	58106037	57976861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
ES_00055931	chr8	-	343	1	FSM	ENSMUSG00000110238.2	ENSMUST00000211401.2	804	1	136	325	136	-325	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATATGCCACACCCTTTC	NA	False	NA	NA	False	NA	NA	NA	58093031	58092688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_58092700_58093000
ES_00055933	chr8	-	5518	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61436334	61363422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
ES_00055936	chr8	-	4099	13	FSM	ENSMUSG00000004319.16	ENSMUST00000110301.2	4099	13	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	50.7408995672021	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGTTAATATTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	61436273	61364956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
ES_00055938	chr8	-	4265	12	FSM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	-67	-5	-67	5	multi-exon	FALSE	canonical	3	58	junction_8	23.5231554638234	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCCCTCTGTGATGTTGT	NA	False	NA	-3	True	AATAAA	-22	NA	62044243	61964461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62044093
ES_00055939	chr8	-	5449	20	FSM	ENSMUSG00000058056.17	ENSMUST00000121493.9	5445	20	0	-4	0	4	multi-exon	FALSE	canonical	0	0	junction_11	50.3924212742716	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGCCCTCTGTGATGTTG	NA	False	NA	-4	True	AATAAA	-21	NA	62213123	61964462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62137768_62138112_62140363_62140484_62155203_62155228_62156135_62156278_62162026_62162102_62164408_62164515_62165845_62165913_62173549_62173729_62212844
ES_00055940	chr8	-	420	1	FSM	ENSMUSG00000109740.2	ENSMUST00000211203.2	886	1	294	172	294	-172	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAAGGCCACCTTTGATG	NA	False	NA	NA	False	NA	NA	NA	63000571	63000151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_63000200_63000600
ES_00055942	chr8	-	2060	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	-1	-15	-1	15	multi-exon	TRUE	canonical	3	690	junction_2	21.3822356174466	1330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGGCTGAGCTTTGCT	NA	False	NA	-2	True	AATAAA	-16	NA	65186827	65171157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ES_00055944	chr8	-	2969	2	FSM	ENSMUSG00000031604.11	ENSMUST00000135943.8	2969	2	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCACATTTTTAT	NA	False	NA	NA	False	AATAAA	-4	NA	65186582	65178014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65180943_65186541
ES_00055946	chr8	-	3414	15	FSM	ENSMUSG00000031605.9	ENSMUST00000034017.9	3412	15	0	-2	0	2	multi-exon	FALSE	canonical	1	64	junction_10	38.1758150815782	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGGAGTTGTTCTTGGG	NA	False	NA	NA	False	ATTAAA	-15	NA	65302669	65192706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65194009_65195988_65196133_65202065_65202207_65202728_65202858_65204762_65204865_65205682_65205881_65207318_65207437_65211125_65211276_65212766_65212884_65217156_65217267_65232731_65232895_65264331_65264454_65275642_65275750_65287094_65287221_65302284
ES_00055947	chr8	-	934	4	FSM	ENSMUSG00000079042.11	ENSMUST00000142822.4	975	4	41	0	41	0	multi-exon	FALSE	canonical	1	6	junction_3	201.802433638007	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGTTTATTGTGTGT	NA	False	NA	-21	True	ATTAAA	-21	NA	65489947	65481068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65481644_65488316_65488407_65489541_65489796_65489932
ES_00055948	chr8	-	946	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	0	-1	0	1	multi-exon	FALSE	canonical	3	429	junction_2	5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATGAGTTTATTGTGT	NA	False	NA	-23	True	ATTAAA	-19	NA	65489824	65481070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65481644_65488316_65488407_65489541
ES_00055951	chr8	-	3150	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAAAGATAATTAT	NA	False	NA	NA	False	NA	NA	NA	66939149	66926981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
ES_00055953	chr8	-	1671	1	FSM	ENSMUSG00000030735.7	ENSMUST00000032981.7	1356	1	-68	-247	-68	247	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGCT	6271	False	NA	NA	False	AATAAA	-29	NA	67968310	67966639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_67966600_67968300
ES_00055954	chr8	-	7668	4	FSM	ENSMUSG00000110444.3	ENSMUST00000072427.7	7668	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	3.85861230093008	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCCTAACTCAAA	NA	False	NA	NA	False	NA	NA	NA	69848174	69819161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69848092
ES_00055955	chr8	-	7778	5	FSM	ENSMUSG00000110444.3	ENSMUST00000213012.2	7778	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	16.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCCTAACTCAAA	NA	False	NA	NA	False	NA	NA	NA	69848174	69819161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69829137_69829248_69848092
ES_00055956	chr8	-	811	1	FSM	ENSMUSG00000110444.3	ENSMUST00000211874.2	928	1	192	-75	175	75	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTTCTCATATGGAGAA	NA	False	NA	NA	False	NA	NA	NA	69847999	69847188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_69847200_69848000
ES_00055959	chr8	-	2259	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTACTTAGTACTC	NA	False	NA	-6	True	AATAAA	-23	NA	70078199	70063507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
ES_00055960	chr8	-	6043	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238292.2	6080	5	0	37	0	-37	multi-exon	FALSE	canonical	3	12	junction_4	30.1029483605842	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAAATATACTGTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	70169487	70155342	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70168933
ES_00055961	chr8	-	3180	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	0	True	NA	NA	NA	70169552	70157786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
ES_00055963	chr8	-	2290	4	FSM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	0	1	0	-1	multi-exon	FALSE	canonical	3	15	junction_3	1.24721912892465	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATTTGGAAAAGGTATC	9672	False	NA	NA	False	AATAAA	-15	NA	70202612	70194289	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70196261_70196841_70196903_70197110_70197238_70202481
ES_00055966	chr8	-	785	6	FSM	ENSMUSG00000048967.17	ENSMUST00000152938.9	785	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	7.28285658241325	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	6664	False	NA	0	True	AATAAA	-16	NA	70346625	70340437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70346560
ES_00055967	chr8	-	1343	4	ISM	ENSMUSG00000036199.10	ENSMUST00000110167.5	1251	5	73	-17	73	17	intron_retention	FALSE	canonical	3	6124	junction_2	115.905133622286	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATCGTGGATCCTTAAT	NA	False	NA	-3	True	AATAAA	-34	NA	70355135	70346812	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_70347061_70347153_70347226_70347891_70347971_70354191
ES_00055968	chr8	-	4915	13	NNC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	0	2086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.604520723128	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGTGTGGTGGTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	70426921	70357639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70357673_70359720_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00055970	chr8	-	3812	13	FSM	ENSMUSG00000036180.16	ENSMUST00000065169.12	3812	13	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_6	322.35922853584	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAGAG	NA	False	NA	NA	False	TTTAAA	-18	NA	70449034	70361119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00055971	chr8	-	3363	13	FSM	ENSMUSG00000036180.16	ENSMUST00000116463.4	3363	13	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_12	181.0697187703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70426921	70361305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00055972	chr8	-	3492	13	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-128	-1	combination_of_known_junctions	FALSE	canonical	3	188	junction_6	285.503308017418	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTCACCTGTGTGGAAA	NA	False	NA	-26	True	AATAAA	-15	NA	70427049	70361307	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00055973	chr8	-	3163	12	NIC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	206	0	combination_of_known_splicesites	FALSE	canonical	3	45	junction_11	319.205107769983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70448677	70361306	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70448592
ES_00055974	chr8	-	5043	13	NIC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	21	3	combination_of_known_junctions	FALSE	canonical	3	132	junction_6	333.513492980419	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAACTGTATTGTTCTTT	NA	False	NA	-6	True	AATAAA	-14	NA	70448862	70359722	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00055975	chr8	-	3623	13	FSM	ENSMUSG00000036180.16	ENSMUST00000212478.2	3622	13	0	-1	0	0	multi-exon	FALSE	canonical	3	316	junction_12	239.231916186412	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70449034	70361305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00055978	chr8	-	8740	17	FSM	ENSMUSG00000031858.17	ENSMUST00000212401.2	4269	17	0	-4471	0	2028	multi-exon	TRUE	canonical	3	224	junction_12	31.9916370908086	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGTCCTGAAACCAGACT	NA	False	NA	NA	False	NA	NA	NA	70495350	70466744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
ES_00055981	chr8	-	2814	19	FSM	ENSMUSG00000031858.17	ENSMUST00000212451.2	1931	19	39	-922	0	0	multi-exon	FALSE	canonical	3	104	junction_6	54.8951019875382	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTTTTTTTTTTTTTTT	NA	False	NA	-13	True	NA	NA	NA	70495345	70471291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476260_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
ES_00055984	chr8	-	3623	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	0	-14	0	2	multi-exon	TRUE	canonical	3	42	junction_5	11.7626261948597	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTTTTGCTTGAGTGT	9545	False	NA	2	True	ATTAAA	-36	NA	70591804	70583441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
ES_00055985	chr8	-	589	2	Intergenic	novelGene_3949	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCGGCTCCAGGCCCAGC	9909	False	NA	NA	False	NA	NA	NA	70649761	70631671	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_70632236_70649736
ES_00055986	chr8	-	3209	8	FSM	ENSMUSG00000002346.17	ENSMUST00000110127.8	3196	8	0	-13	0	13	multi-exon	FALSE	canonical	2	20	junction_2	5.41728149310244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAACTCTGGCTCCAC	NA	False	NA	NA	False	AATAAA	-26	NA	70664955	70636976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ES_00055987	chr8	-	3670	7	FSM	ENSMUSG00000002346.17	ENSMUST00000139333.8	3657	7	0	-13	0	13	multi-exon	FALSE	canonical	2	20	junction_2	5.61743318211757	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAACTCTGGCTCCAC	NA	False	NA	NA	False	AATAAA	-26	NA	70664955	70636976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70639427_70640949_70641102_70641482_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ES_00055988	chr8	-	2263	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCATTTTTCTCACCT	4668	False	NA	0	True	TTTAAA	-1	NA	70687116	70672821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ES_00055989	chr8	-	892	2	FSM	ENSMUSG00000002343.12	ENSMUST00000136666.2	586	2	-27	-279	-27	0	multi-exon	FALSE	canonical	3	75	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAGTGAGTGTAAT	NA	False	NA	-26	True	NA	NA	NA	70674967	70672847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70673528_70674755
ES_00055993	chr8	-	2137	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGAATCCAATAGCTAC	9931	False	NA	-24	True	NA	NA	NA	70755139	70745515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
ES_00055994	chr8	-	4527	24	FSM	ENSMUSG00000058301.9	ENSMUST00000215817.2	4518	24	0	-9	0	9	multi-exon	TRUE	canonical	0	0	junction_1	119.404999372875	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGTGGGGCGGTCCCTG	NA	False	NA	-20	True	AATAAA	-23	NA	70805861	70784165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ES_00055995	chr8	-	4627	24	FSM	ENSMUSG00000058301.9	ENSMUST00000075666.8	4618	24	0	-9	0	9	multi-exon	FALSE	canonical	0	0	junction_1	146.934304983882	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGTGGGGCGGTCCCTG	NA	False	NA	-20	True	AATAAA	-23	NA	70805928	70784165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792631_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ES_00055997	chr8	-	4085	25	NNC	ENSMUSG00000058301.9	novel	4518	24	NA	NA	-94	-573	at_least_one_novel_splicesite	TRUE	non_canonical	2	18	junction_1	139.159056678161	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGGCCAGGAGCATCAGT	NA	False	NA	NA	False	GGGGCT	-41	NA	70806022	70784747	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70785126_70785265_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427_70805815_70805835
ES_00055998	chr8	-	3945	25	NNC	ENSMUSG00000058301.9	novel	4618	24	NA	NA	-104	-756	at_least_one_novel_splicesite	FALSE	non_canonical	2	18	junction_1	161.047353284678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGGGCGCCCCCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	70806032	70784930	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70785126_70785265_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792631_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427_70805815_70805835
ES_00055999	chr8	-	5801	14	FSM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	-115	-3	-115	3	multi-exon	FALSE	canonical	3	29	junction_8	14.7616166270428	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTTCCTCTTTTTCCAA	5098	False	NA	-1	True	AATAAA	-21	NA	70892344	70835001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ES_00056000	chr8	-	10260	14	FSM	ENSMUSG00000003575.14	ENSMUST00000142769.8	10265	14	0	5	0	-5	multi-exon	FALSE	canonical	1	1	junction_5	18.7474653119109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTCTGGGCCTCTTCCTCT	5213	False	NA	-9	True	AATAAA	-13	NA	70892229	70835009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844562_70844669_70844814_70845571_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ES_00056001	chr8	-	1462	4	FSM	ENSMUSG00000003575.14	ENSMUST00000125613.8	870	4	-48	-544	-44	544	multi-exon	FALSE	canonical	3	61	junction_2	6.48074069840786	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGCACACAGTGTGGGT	5169	False	NA	-7	True	NA	NA	NA	70892273	70856954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70857971_70858727_70858866_70861544_70861662_70892082
ES_00056002	chr8	-	2983	3	FSM	ENSMUSG00000055707.14	ENSMUST00000210250.2	2974	3	0	-9	0	1	multi-exon	FALSE	canonical	2	11	junction_1	21.5	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGACCTGTGCCACC	NA	False	NA	32	True	NA	NA	NA	70929599	70902867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70905568_70908115_70908299_70929499
ES_00056003	chr8	-	2991	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	2	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	-18	True	AATAAA	-16	NA	70929555	70902917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70905670_70908115_70908299_70929499
ES_00056005	chr8	-	639	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	-7	0	4	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGCTCTGTATCTTGGG	NA	False	NA	-1	True	AATAAA	-24	NA	70959076	70956937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
ES_00056007	chr8	-	682	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	0	-11	0	4	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGCTCTGTATCTTGGG	NA	False	NA	-1	True	AATAAA	-24	NA	70959387	70956937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ES_00056009	chr8	-	930	3	FSM	ENSMUSG00000058833.12	ENSMUST00000138196.2	542	3	-388	0	-70	0	multi-exon	FALSE	canonical	3	841	junction_1	23	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGGCGTCGAGCCCAG	NA	False	NA	-111	True	NA	NA	NA	70959146	70957047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70957160_70957633_70957711_70958405
ES_00056010	chr8	-	697	4	FSM	ENSMUSG00000090137.9	ENSMUST00000140679.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963000	70960912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962767
ES_00056011	chr8	-	705	4	FSM	ENSMUSG00000090137.9	ENSMUST00000129909.8	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963005	70960912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962767
ES_00056012	chr8	-	647	3	FSM	ENSMUSG00000090137.9	ENSMUST00000127793.2	646	3	0	-1	0	0	multi-exon	FALSE	canonical	3	14257	junction_2	4054	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963029	70960912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962285_70962987
ES_00056013	chr8	-	711	4	FSM	ENSMUSG00000090137.9	ENSMUST00000125184.8	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	14257	junction_3	3914.7897346686	6966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963231	70960912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962987
ES_00056014	chr8	-	544	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	-3	0	0	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963067	70960912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
ES_00056015	chr8	-	886	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	0	-2	0	2	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTAATTGGTGTCTAGAG	NA	False	NA	-11	True	AATAAA	-21	NA	70975813	70960919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ES_00056017	chr8	-	520	4	FSM	ENSMUSG00000090137.9	ENSMUST00000135446.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_3	10349.9061616787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCATACCTGGCATGTG	NA	False	NA	-69	True	AATAAA	-4	NA	70963451	70960977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70963333
ES_00056018	chr8	-	937	7	FSM	ENSMUSG00000055553.17	ENSMUST00000138260.8	917	7	0	-20	0	20	multi-exon	FALSE	canonical	3	33	junction_6	10452.4158770433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTGCTACGCACGCCTG	NA	False	NA	NA	False	NA	NA	NA	70980606	70961079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70980294
ES_00056019	chr8	-	1216	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975830	70966045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ES_00056020	chr8	-	1123	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	114	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_4	284.550852221532	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70980319	70966045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70980294
ES_00056023	chr8	-	1487	17	FSM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	0	-12	0	12	multi-exon	TRUE	canonical	3	428	junction_1	289.200298236361	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCTTTTACTTGACAT	NA	False	NA	2	True	AATAAA	-29	NA	71060964	71050127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ES_00056024	chr8	-	1700	16	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	0	8	intron_retention	FALSE	canonical	3	751	junction_3	214.93682792858	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGATGTCTTTTACTTG	NA	False	NA	-2	True	AATAAA	-25	NA	71060937	71050131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ES_00056025	chr8	-	1572	17	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	86	junction_1	351.765524710708	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGATGTCTTTTACTTG	NA	False	NA	-2	True	AATAAA	-25	NA	71060937	71050131	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_71050419_71050546_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ES_00056033	chr8	-	394	2	Antisense	novelGene_ENSMUSG00000049988.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	292	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACTTTATAAAAAATAAAT	5309	False	NA	NA	False	NA	NA	NA	71080451	71072798	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_71072935_71080193
ES_00056034	chr8	-	2265	2	FSM	ENSMUSG00000038508.8	ENSMUST00000003808.8	1545	2	-714	-6	-353	6	multi-exon	FALSE	canonical	3	308	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTGACCTTGGCATGA	301	False	NA	0	True	AATAAA	-24	NA	71085459	71082036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71082825_71083982
ES_00056035	chr8	-	1387	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	0	-7	0	6	multi-exon	FALSE	canonical	3	72	junction_2	118	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTGACCTTGGCATGA	654	False	NA	0	True	AATAAA	-24	NA	71085106	71082036	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71082825_71083982_71084275_71084799
ES_00056036	chr8	-	1477	3	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-129	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_2	115.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	525	False	NA	-6	True	AATAAA	-18	NA	71085235	71082042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71082825_71083982_71084242_71084799
ES_00056038	chr8	-	1419	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-6406	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	125.762562880303	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	NA	False	NA	-6	True	AATAAA	-18	NA	71091512	71082042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71091364
ES_00056041	chr8	-	3186	17	NNC	ENSMUSG00000031834.16	novel	3165	16	NA	NA	0	61891	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	45.1008851770118	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGAAGATCTGGTTATAT	NA	False	NA	NA	False	NA	NA	NA	71229357	71158928	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71158954_71220823_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
ES_00056045	chr8	-	998	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	-18	0	18	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGTTTGTGTTTTTGTCT	NA	False	NA	3	True	AATAAA	-36	NA	71219307	71215400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
ES_00056046	chr8	-	3165	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_15	21.8259784049498	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTTGGGGACTGG	NA	False	NA	-8	True	NA	NA	NA	71229357	71220819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
ES_00056047	chr8	-	3243	17	NNC	ENSMUSG00000031834.16	novel	3165	16	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	64.2688445127186	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTGAGTGTCTTTGGGG	NA	False	NA	-13	True	NA	NA	NA	71229346	71220824	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71221542_71221705_71221877_71221991_71222064_71222234_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71225464_71225561_71227299_71227997_71229250
ES_00056048	chr8	-	3233	17	NIC	ENSMUSG00000031834.16	novel	3165	16	NA	NA	-12	-6	combination_of_known_junctions	FALSE	canonical	2	4	junction_15	55.5444290073271	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGCTGAGTGTCTTTGGG	NA	False	NA	-14	True	NA	NA	NA	71229335	71220825	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71225464_71225561_71227299_71227997_71229250
ES_00056049	chr8	-	3095	16	NNC	ENSMUSG00000031834.16	novel	3165	16	NA	NA	27	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	45.2089470004433	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTGAGTGTCTTTGG	NA	False	NA	-15	True	NA	NA	NA	71229296	71220826	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71221542_71221705_71221877_71221991_71222064_71222234_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
ES_00056051	chr8	-	5281	28	NIC	ENSMUSG00000031833.11	novel	5305	27	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_26	15.7838625025906	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTGTGCATTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	71257620	71230761	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71249356_71249447_71252101_71252134_71257586
ES_00056052	chr8	-	5339	27	NIC	ENSMUSG00000031833.11	novel	5305	27	NA	NA	-14	124	combination_of_known_junctions	FALSE	canonical	3	24	junction_26	10.3378576975671	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTACCTAGCAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	71257643	71230636	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71252101_71252134_71257586
ES_00056053	chr8	-	5426	26	FSM	ENSMUSG00000031833.11	ENSMUST00000211948.2	4251	26	36	-1211	0	124	multi-exon	TRUE	canonical	3	14	junction_25	10.6046027742674	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTACCTAGCAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	71245045	71230636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71244869
ES_00056055	chr8	-	1322	4	NNC	ENSMUSG00000002910.12	novel	2355	8	NA	NA	0	7601	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	42.6249796350554	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGGGGGCTGGTGAGATG	NA	False	NA	NA	False	AAAAAG	-5	NA	71292162	71280171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71280372_71290821_71291486_71291622_71291690_71291771
ES_00056056	chr8	-	2281	8	FSM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	74	0	14	0	multi-exon	FALSE	canonical	0	0	junction_5	35.6330504688314	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71292290	71287772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71291771
ES_00056057	chr8	-	803	4	FSM	ENSMUSG00000002910.12	ENSMUST00000212508.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	49.0260701622673	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTTTGCGGAGATTGAC	NA	False	NA	NA	False	NA	NA	NA	71292162	71289998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71290011_71290087_71290191_71291337_71291486_71291622
ES_00056061	chr8	-	795	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350042	71348022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
ES_00056062	chr8	-	578	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212129.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_3	13957.9624766654	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350044	71348022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348789_71348957_71350002
ES_00056063	chr8	-	700	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	13791.0578727667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGCTTGTTTGCTTC	NA	False	NA	-19	True	AATAAA	-11	NA	71349927	71348026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349772
ES_00056064	chr8	-	576	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	-51	True	NA	NA	NA	71350039	71348058	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
ES_00056065	chr8	-	1951	11	FSM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	62	0	62	0	multi-exon	FALSE	canonical	3	458	junction_6	24.6578587878185	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	200	False	NA	-9	True	NA	NA	NA	71725516	71703768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ES_00056066	chr8	-	2229	4	FSM	ENSMUSG00000002393.15	ENSMUST00000002466.9	2218	4	0	-11	0	7	multi-exon	FALSE	canonical	3	125	junction_2	9.56846672960488	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTTTCTTCTGCAGTA	NA	False	NA	3	True	AATAAA	-23	NA	71834604	71826759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71827399_71828392_71828918_71831032_71831128_71833634
ES_00056068	chr8	-	1973	2	FSM	ENSMUSG00000007950.10	ENSMUST00000212503.2	2626	2	0	653	0	-653	multi-exon	FALSE	canonical	3	66	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCTCCCAAGTACTGGG	NA	False	NA	NA	False	NA	NA	NA	71916266	71912800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71914617_71916109
ES_00056070	chr8	-	905	4	ISM	ENSMUSG00000034845.7	ENSMUST00000048452.6	1987	6	4024	4	4024	-4	3prime_fragment	FALSE	canonical	3	9	junction_3	3.77123616632825	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGACTGGTTTGTATTTG	NA	False	NA	NA	False	AATAAA	-14	NA	71960372	71950412	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_71951050_71959480_71959563_71959663_71959722_71960244
ES_00056071	chr8	-	794	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	0	-2	0	2	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTTCTAAGTTGCTAG	NA	False	NA	NA	False	AATAAA	-19	NA	71990100	71986896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
ES_00056073	chr8	-	958	8	FSM	ENSMUSG00000034799.17	ENSMUST00000176777.8	944	8	0	-14	0	14	multi-exon	FALSE	canonical	2	5	junction_3	16.3682120998886	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGTTGGCTTCCCTCTC	NA	False	NA	17	True	NA	NA	NA	72124385	72112970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72113294_72114462_72114496_72115124_72115180_72115483_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ES_00056074	chr8	-	1021	9	NNC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	26	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	20.6397674405503	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACGTGTGTTATATATAA	NA	False	NA	-4	True	NA	NA	NA	72124354	72112991	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72117769_72117900_72118622_72118723_72124269
ES_00056075	chr8	-	3229	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1749	145	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	75.5	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTTGCTTTTCCCAG	6772	False	NA	NA	False	NA	NA	NA	72156182	72143254	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_72145800_72145960_72146544_72156081
ES_00056076	chr8	-	3055	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	27	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACTGTCTATTGTGCAC	8521	False	NA	NA	False	NA	NA	NA	72154433	72143399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72145800_72145960_72146544_72154361
ES_00056077	chr8	-	2636	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1733	-456	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	71.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	6788	False	NA	-5	True	NA	NA	NA	72156166	72143855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_72145800_72145960_72146544_72156057
ES_00056080	chr8	-	3194	28	FSM	ENSMUSG00000070000.14	ENSMUST00000146100.8	3188	28	0	-6	0	-1	multi-exon	TRUE	non_canonical	0	0	junction_17	36.1995308763152	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTGATTTTTGCCGCT	NA	False	NA	0	True	NA	NA	NA	72178360	72161031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ES_00056082	chr8	-	1027	6	FSM	ENSMUSG00000070000.14	ENSMUST00000127005.2	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	11.6858889263932	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGCTACCGTGCGGGCG	NA	False	NA	NA	False	NA	NA	NA	72164823	72162332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694
ES_00056087	chr8	-	1170	1	FSM	ENSMUSG00000070713.6	ENSMUST00000075602.8	1151	1	0	-19	0	19	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAAAAAT	NA	False	NA	NA	False	AATAAA	-41	NA	73059104	73057934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73057900_73059100
ES_00056088	chr8	-	3129	24	FSM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	82.9540606689901	1877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175304	73094842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00056089	chr8	-	2694	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212121.2	2686	22	0	-8	0	6	multi-exon	FALSE	canonical	3	40	junction_6	89.8414577371977	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACTATCTTCTTTTTAA	NA	False	NA	NA	False	TATAAA	-45	NA	73175295	73094836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00056090	chr8	-	2789	22	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACATGAGACTATCTTC	NA	False	NA	NA	False	TATAAA	-38	NA	73175304	73094843	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00056091	chr8	-	2983	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	33	junction_2	86.0488161471765	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAAACATGAGACTATC	NA	False	NA	NA	False	TATAAA	-35	NA	73175295	73094846	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_73095369_73099809_73100016_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00056092	chr8	-	2702	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212950.2	2620	22	-3	-79	0	79	multi-exon	FALSE	canonical	3	153	junction_1	58.0603720511769	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGGCACTTGGGTAAGA	NA	False	NA	NA	False	GGGGCT	-17	NA	73175285	73111832	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00056093	chr8	-	3452	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	-64	-12	-59	12	multi-exon	FALSE	canonical	3	313	junction_2	26.4222128772995	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTCCATCTGGGGCTGT	NA	False	NA	NA	False	AATAAA	-25	NA	73175363	73131249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00056096	chr8	-	3646	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGACACTTGATTTTT	NA	False	NA	-2	True	AATAAA	-31	NA	73229070	73214473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
ES_00056098	chr8	-	4383	6	FSM	ENSMUSG00000019731.14	ENSMUST00000152080.8	4383	6	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_3	20.3901937214927	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGAGTTTGGTTCTGGT	NA	False	NA	-6	True	AATAAA	-15	NA	73246458	73234484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73237838_73238504_73238751_73241964_73242091_73243295_73243434_73245685_73245757_73246009
ES_00056099	chr8	-	3161	4	NIC	ENSMUSG00000019731.14	novel	4383	6	NA	NA	7	-951	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	115.372825608498	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTTCTGTTCATAGGC	NA	False	NA	-24	True	AATAAA	-7	NA	73246451	73235435	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_73237838_73238504_73238751_73245685_73245757_73246009
ES_00056102	chr8	-	2890	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	0	2	0	-2	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCAGTCTATCTACTCCT	NA	False	NA	-1	True	AATAAA	-25	NA	73324932	73319033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
ES_00056106	chr8	-	3093	23	FSM	ENSMUSG00000037148.9	ENSMUST00000076316.6	3084	23	0	-9	0	9	multi-exon	FALSE	canonical	3	15	junction_7	5.93072961101822	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGGCCTAATATGGAGAGT	NA	False	NA	NA	False	AATAAA	-23	NA	78244582	77976985	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_77977637_77983954_77984047_77985685_77985839_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456_78177553_78244258
ES_00056108	chr8	-	695	6	FSM	ENSMUSG00000031617.17	ENSMUST00000152168.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	28.1992907712233	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCACTGTAAGTAGGACT	NA	False	NA	NA	False	AATATA	-27	NA	78337327	78329494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731_78336949_78337290
ES_00056109	chr8	-	377	1	FSM	ENSMUSG00000110057.2	ENSMUST00000209570.2	377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	667	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	79213039	79212662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79212700_79213000
ES_00056111	chr8	-	1695	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	AGTAAA	-18	NA	79235527	79231897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79233493_79235427
ES_00056112	chr8	-	3825	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	-33	0	33	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTCCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	79547769	79531460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ES_00056113	chr8	-	2107	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAGTTGCCACCATCT	NA	False	NA	NA	False	AGTAAA	-27	NA	79547769	79533079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ES_00056114	chr8	-	6232	2	FSM	ENSMUSG00000031683.17	ENSMUST00000126174.2	473	2	-2554	-3205	450	33	multi-exon	FALSE	canonical	3	1217	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTCCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	79539393	79531460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79534875_79536575
ES_00056118	chr8	-	3099	7	FSM	ENSMUSG00000031681.17	ENSMUST00000066091.14	3099	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	13.1835335003767	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCATTTTTTTTCTTTG	NA	False	NA	15	True	AATAAA	-33	NA	80126147	80065023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_80066422_80070282_80070540_80076219_80076442_80079958_80080076_80082840_80083099_80098412_80098994_80125881
ES_00056119	chr8	-	596	1	FSM	ENSMUSG00000094594.3	ENSMUST00000178097.3	523	1	-86	13	-86	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCAGAACAGACAGCCC	NA	False	NA	NA	False	NA	NA	NA	80407521	80406925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_80406900_80407500
ES_00056122	chr8	-	1177	6	FSM	ENSMUSG00000064325.5	ENSMUST00000155850.3	1173	6	0	-4	0	4	multi-exon	FALSE	canonical	2	5	junction_1	3.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGCCCTTTTAAAATTT	NA	False	NA	4	True	ATTAAA	-23	NA	80716978	80692475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_80693058_80699026_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874
ES_00056124	chr8	-	1238	1	FSM	ENSMUSG00000082491.2	ENSMUST00000119768.2	1281	1	90	-47	90	47	mono-exon	FALSE	NA	NA	NA	NA	NA	1966	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTCCATTAATTGTTTG	NA	False	NA	NA	False	NA	NA	NA	80838625	80837387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_80837400_80838600
ES_00056125	chr8	-	6117	24	FSM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	0	-4	0	4	multi-exon	FALSE	canonical	3	1231	junction_15	129.150386396008	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTAAGTCTGAATAATTA	NA	False	NA	NA	False	AATAAA	-19	NA	81466126	81425131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075_81432209_81435311_81435435_81435741_81435856_81436284_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
ES_00056126	chr8	-	3985	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21234	10	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTACTTTTTTCTTACTT	NA	False	NA	3	True	AATAAA	-27	NA	81585891	81491056	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
ES_00056127	chr8	-	4881	10	FSM	ENSMUSG00000031714.10	ENSMUST00000034150.10	4870	10	0	-11	0	9	multi-exon	FALSE	canonical	3	25	junction_9	135.607913385759	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTACTTTTTTCTTACT	NA	False	NA	2	True	AATAAA	-26	NA	81607125	81491057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81606160
ES_00056128	chr8	-	4994	11	FSM	ENSMUSG00000031714.10	ENSMUST00000210676.2	4985	11	0	-9	0	9	multi-exon	FALSE	canonical	3	20	junction_4	194.66638127833	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTACTTTTTTCTTACT	NA	False	NA	2	True	AATAAA	-26	NA	81607148	81491057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81606160
ES_00056130	chr8	-	369	1	FSM	ENSMUSG00000094615.3	ENSMUST00000178708.3	719	1	454	-104	454	104	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGGATTCTAAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	81924523	81924154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_81924200_81924500
ES_00056131	chr8	-	1763	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	0	-88	0	74	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTATAGTAATCTGAG	NA	False	NA	71	True	TATAAA	-20	NA	83500789	83490161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
ES_00056132	chr8	-	911	5	FSM	ENSMUSG00000031711.8	ENSMUST00000209587.2	895	5	0	-16	0	16	multi-exon	FALSE	canonical	3	422	junction_2	47.0232655182517	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCTCCTTGAAATTTG	NA	False	NA	NA	False	NA	NA	NA	83496101	83491122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948
ES_00056133	chr8	-	4338	9	FSM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	0	-19	0	19	multi-exon	FALSE	canonical	3	74	junction_4	7.29297607290741	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCCCCTCATCCCTATT	8170	False	NA	22	True	AATAAA	-42	NA	84059115	84039631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
ES_00056135	chr8	-	409	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGCTTTTTTTCTTCC	7419	False	NA	NA	False	AGTAAA	-26	NA	84169134	84162500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
ES_00056137	chr8	-	1278	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	0	-6	0	4	multi-exon	FALSE	canonical	3	16	junction_10	1132.45025644985	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTTTAGGGGTA	NA	False	NA	1	True	AATAAA	-19	NA	84321058	84298322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
ES_00056138	chr8	-	1164	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	-6	0	4	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTTTAGGGGTA	NA	False	NA	1	True	AATAAA	-19	NA	84321106	84298322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
ES_00056139	chr8	-	1126	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	-6	0	4	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTTTAGGGGTA	NA	False	NA	1	True	AATAAA	-19	NA	84321113	84298322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
ES_00056140	chr8	-	734	6	FSM	ENSMUSG00000031708.18	ENSMUST00000212418.2	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_3	1506.30759143012	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTTACCCTGTGTGACC	NA	False	NA	NA	False	NA	NA	NA	84321106	84299291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84299383_84299469_84299576_84299656_84299953_84300499_84300552_84301106_84301158_84320968
ES_00056143	chr8	-	6590	22	FSM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	-56	-3539	-56	-16	multi-exon	FALSE	canonical	3	45	junction_21	57.6705790816251	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTGGATAAAATCTAAAC	NA	False	NA	-25	True	NA	NA	NA	84420745	84393180	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84420588
ES_00056144	chr8	-	6670	22	FSM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	0	-8	0	8	multi-exon	TRUE	canonical	3	231	junction_13	29.0604187256126	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGAGCATCGCCTG	NA	False	NA	-1	True	AATAAA	-22	NA	84425808	84393156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
ES_00056146	chr8	-	2986	18	FSM	ENSMUSG00000002885.15	ENSMUST00000002964.14	2986	18	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_14	43.193056599508	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAGCTTTGGAACAATA	NA	False	NA	NA	False	AATAAA	-17	NA	84467955	84449879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ES_00056147	chr8	-	3000	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	False	NA	-9	True	ATTAAA	-21	NA	84467798	84449990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ES_00056148	chr8	-	2869	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	0	-2	0	0	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	False	NA	-9	True	ATTAAA	-21	NA	84467802	84449990	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ES_00056151	chr8	-	2789	5	FSM	ENSMUSG00000074219.4	ENSMUST00000098595.3	2798	5	0	9	0	-9	multi-exon	FALSE	canonical	2	4	junction_1	2.12132034355964	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGGCAATGTTCTCCT	6070	False	NA	NA	False	AATAAA	-6	NA	84681834	84658966	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84661236_84661487_84661700_84662360_84662458_84662696_84662805_84681731
ES_00056152	chr8	-	483	4	FSM	ENSMUSG00000074219.4	ENSMUST00000238531.2	609	4	126	0	-12	0	multi-exon	FALSE	canonical	2	4	junction_1	1.4142135623731	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGCAAGCCCCGCAGG	6058	False	NA	NA	False	NA	NA	NA	84681846	84661176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84661236_84661487_84661700_84662360_84662458_84681731
ES_00056154	chr8	-	385	2	FSM	ENSMUSG00000074217.9	ENSMUST00000185457.2	385	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCGCGGTTCCGGAGCCT	7520	False	NA	NA	False	NA	NA	NA	84738800	84738072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84738400_84738742
ES_00056156	chr8	-	896	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	7	-269	7	269	multi-exon	FALSE	canonical	3	87	junction_1	0	6047	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACGCGTGCGTATCAT	2855	False	NA	-2	True	AATAAA	-17	NA	84771622	84769288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84769961_84771398
ES_00056157	chr8	-	2314	13	FSM	ENSMUSG00000037103.9	ENSMUST00000041367.9	2312	13	0	-2	0	2	multi-exon	FALSE	canonical	3	17	junction_1	56.6688112339289	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCTGTTCTGTCC	9263	False	NA	-1	True	ACTAAA	-19	NA	84831391	84823698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84824138_84824251_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ES_00056158	chr8	-	2201	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	0	-2	0	2	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCTGTTCTGTCC	9262	False	NA	-1	True	ACTAAA	-19	NA	84831392	84823698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ES_00056159	chr8	-	3476	29	FSM	ENSMUSG00000036686.17	ENSMUST00000040383.9	3471	29	0	-5	0	5	multi-exon	FALSE	canonical	3	61	junction_17	12.7601500215095	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTTGTCCTTGATGTA	NA	False	NA	4	True	AATGAA	-29	NA	84874565	84859451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
ES_00056160	chr8	-	856	2	FSM	ENSMUSG00000056155.7	ENSMUST00000210202.2	692	2	-164	0	-164	0	multi-exon	FALSE	canonical	3	14	junction_1	0	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCCAATAAATGCTAAGG	NA	False	NA	-31	True	NA	NA	NA	84903345	84900387	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84900602_84902703
ES_00056162	chr8	-	4625	14	FSM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_10	5.27694550342846	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGATTGCACTGTCCTT	6086	False	NA	NA	False	NA	NA	NA	84963684	84937306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848_84949985_84950299_84950555_84950771_84950910_84952444_84952796_84953300_84953469_84955420_84955572_84955651_84955801_84957369_84957727_84961531_84961734_84963495
ES_00056163	chr8	-	658	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	0	7550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.068433375739	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACATGGGCTGGGCATG	9834	False	NA	NA	False	NA	NA	NA	84976348	84965316	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_84965356_84972863_84973323_84976102_84976159_84976244
ES_00056164	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1764	junction_2	46	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84973323_84976102_84976159_84976244
ES_00056165	chr8	-	596	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	981	junction_1	392.595069873386	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_84972948_84972967_84973323_84976102_84976159_84976244
ES_00056166	chr8	-	2819	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	18.1159460144923	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTTTACAATACACAAA	6966	False	NA	NA	False	NA	NA	NA	84983953	84976534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
ES_00056167	chr8	-	2221	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	-52	-50	-52	50	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTATGTTGTCTCACTGAG	NA	False	NA	NA	False	NA	NA	NA	84997061	84984373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ES_00056169	chr8	-	1441	9	FSM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	76.6823806359714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTTGTTTCTAAACT	NA	False	NA	-22	True	ATTAAA	-15	NA	84996976	84984929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ES_00056173	chr8	-	1552	2	Genic_Genomic	ENSMUSG00000053560.6	novel	1524	1	NA	NA	2	11613	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAATATTTATATATTT	NA	False	NA	NA	False	NA	NA	NA	85389481	85376346	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_85376385_85387967
ES_00056175	chr8	-	4344	6	FSM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	52.9172939595365	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTGTGCTCTGCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	85414531	85397107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969_85403882_85414303
ES_00056176	chr8	-	1372	2	FSM	ENSMUSG00000053226.8	ENSMUST00000238279.2	1369	2	0	-3	0	2	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGTGCTTCTTTCTGAC	399	False	NA	3	True	CATAAA	-18	NA	85559038	85542030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85543163_85558798
ES_00056177	chr8	-	2074	9	FSM	ENSMUSG00000003813.16	ENSMUST00000003911.13	2074	9	0	0	0	0	multi-exon	TRUE	canonical	3	805	junction_3	189.238440862315	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCATCTGCTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	85567270	85561280	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ES_00056178	chr8	-	1842	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567294	85561539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ES_00056181	chr8	-	854	3	FSM	ENSMUSG00000003814.9	ENSMUST00000128028.2	854	3	0	0	0	0	multi-exon	FALSE	canonical	3	1106	junction_2	108	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGGTAATCGTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	85573459	85572065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85572695_85572878_85572981_85573336
ES_00056182	chr8	-	2185	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	0	-18	0	18	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTAGACCAACAAGGTGG	NA	False	NA	13	True	AATAAA	-27	NA	85620546	85613003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
ES_00056183	chr8	-	2132	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	0	-18	0	18	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTAGACCAACAAGGTGG	NA	False	NA	13	True	AATAAA	-27	NA	85620550	85613003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
ES_00056186	chr8	-	2989	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	0	-8	0	8	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTATTTATTTATTT	4554	False	NA	1	True	NA	NA	NA	85696369	85683230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
ES_00056188	chr8	-	1017	8	FSM	ENSMUSG00000052926.17	ENSMUST00000109738.10	2044	8	-30	1057	0	0	multi-exon	FALSE	canonical	3	1021	junction_5	82.5459674041917	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8253	False	NA	-8	True	AATAAA	-14	NA	85692670	85684295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ES_00056189	chr8	-	1006	8	FSM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	398.770508397182	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8253	False	NA	-8	True	AATAAA	-14	NA	85692670	85684295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ES_00056190	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8230	False	NA	-8	True	AATAAA	-14	NA	85692693	85684295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ES_00056191	chr8	-	1702	10	NIC	ENSMUSG00000052926.17	novel	1532	11	NA	NA	110	0	intron_retention	FALSE	canonical	3	9	junction_9	457.889387688801	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	4964	False	NA	-8	True	AATAAA	-14	NA	85695959	85684295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695726
ES_00056194	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
ES_00056195	chr8	-	951	5	FSM	ENSMUSG00000052456.10	ENSMUST00000209834.2	861	5	0	-90	0	90	multi-exon	FALSE	canonical	1	47	junction_3	850.468841286969	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGACAACGTTCATCTG	8415	False	NA	NA	False	NA	NA	NA	85751895	85745348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85745548_85746150_85746302_85746388_85746680_85750806_85750955_85751733
ES_00056197	chr8	-	1561	7	FSM	ENSMUSG00000005150.17	ENSMUST00000136696.8	1561	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	8.39477350630869	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807332	85801663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85801973_85802451_85802567_85802652_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
ES_00056198	chr8	-	1238	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807375	85801663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
ES_00056199	chr8	-	1587	4	FSM	ENSMUSG00000074194.5	ENSMUST00000098550.4	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	2.16024689946929	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTGCTTAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	85846266	85836275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85837672_85838838_85838900_85840135_85840263_85846263
ES_00056200	chr8	-	3553	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	0	-79	0	79	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTACTGAATTCTCTTA	NA	False	NA	71	True	NA	NA	NA	86026431	85986941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
ES_00056201	chr8	-	5002	1	FSM	ENSMUSG00000031696.10	ENSMUST00000209277.2	5002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAATAAAAGAACCTCTGG	NA	False	NA	NA	False	NA	NA	NA	86001132	85996130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85996100_86001100
ES_00056203	chr8	-	2920	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	-1	0	1	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCAGCATTCTTCAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	86281973	86264260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ES_00056204	chr8	-	5611	9	FSM	ENSMUSG00000036902.12	ENSMUST00000216286.2	2932	9	32	-2711	32	-133	multi-exon	FALSE	canonical	2	4	junction_3	4.55521678957215	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCCTTGCCTCAATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	86427521	86363349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_86367746_86369041_86369156_86374344_86374574_86389807_86389936_86390015_86390061_86396162_86396412_86397018_86397160_86400702_86400760_86427269
ES_00056205	chr8	-	4936	9	FSM	ENSMUSG00000036902.12	ENSMUST00000209479.2	4936	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.7649262788001	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAATTACTGTGAATTC	NA	False	NA	NA	False	NA	NA	NA	86427383	86363865	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_86367746_86369041_86369156_86374344_86374574_86389807_86389936_86390036_86390061_86396162_86396412_86397018_86397160_86400702_86400760_86427269
ES_00056207	chr8	-	3329	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	0	-23	0	23	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATAATTACTTTGGAGC	NA	False	NA	2	True	AATAAA	-36	NA	86567550	86444183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
ES_00056210	chr8	-	2789	3	FSM	ENSMUSG00000031654.17	ENSMUST00000034076.16	2800	3	0	11	0	-11	multi-exon	FALSE	canonical	3	8	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTCTTTTCCTTTTCCTT	100	False	NA	NA	False	AATAAA	-6	NA	88199237	88195043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_88197080_88198319_88198440_88198604
ES_00056211	chr8	-	4461	7	FSM	ENSMUSG00000045333.16	ENSMUST00000052250.15	4510	7	0	49	0	-49	multi-exon	FALSE	canonical	0	0	junction_6	8.19383236885457	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGCAGTAACTAGTTCA	NA	False	NA	NA	False	TTTAAA	-13	NA	88622363	88388488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826_88510042_88585911_88586113_88622298
ES_00056212	chr8	-	4878	8	FSM	ENSMUSG00000045333.16	ENSMUST00000109655.9	4907	8	25	4	25	-2	multi-exon	FALSE	canonical	2	9	junction_7	4.95695759225642	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACACTGCCTGGTTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	88686198	88388441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826_88510042_88585911_88586113_88631116_88631177_88685823
ES_00056213	chr8	-	548	1	Genic_Genomic	ENSMUSG00000055968.2	novel	NA	NA	NA	NA	70	179	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGTGACGGCCTGAGCAC	NA	False	NA	NA	False	NA	NA	NA	88865075	88864527	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_88864500_88865100
ES_00056216	chr8	-	3625	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_12	36.2439650148821	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89088822	89057686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ES_00056217	chr8	-	2626	17	NNC	ENSMUSG00000031660.14	novel	3625	17	NA	NA	0	732	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_15	126.872583105059	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGGTCTGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	89088822	89058682	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084655_89088129_89088339_89088533
ES_00056218	chr8	-	1414	3	FSM	ENSMUSG00000031660.14	ENSMUST00000139675.8	1746	3	345	-13	345	-6	multi-exon	FALSE	canonical	3	554	junction_2	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGATTTGTTTTATTTA	NA	False	NA	13	True	NA	NA	NA	89061770	89059420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89059653_89060365_89060510_89060732
ES_00056219	chr8	-	1686	4	FSM	ENSMUSG00000031662.9	ENSMUST00000034087.9	1699	4	13	0	13	0	multi-exon	FALSE	canonical	3	13	junction_1	1.63299316185545	2635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGCAGGATGGAGAGT	NA	False	NA	NA	False	AGTAAA	-17	NA	89362743	89353190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89354456_89356541_89356694_89358396_89358536_89362613
ES_00056220	chr8	-	7295	4	NNC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	-1469	7	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	100.141011689628	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTAGAGTGCATTT	NA	False	NA	NA	False	GATAAA	-16	NA	89772259	89753855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_89755447_89756571_89760027_89768979_89769073_89770103
ES_00056221	chr8	-	5303	4	FSM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	-30	-8	-30	8	multi-exon	FALSE	canonical	3	24	junction_3	110.426446107805	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGTAGAGTGCATTTC	NA	False	NA	NA	False	GATAAA	-17	NA	89770820	89753854	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89755447_89756571_89760027_89768979_89769073_89770657
ES_00056222	chr8	-	5589	3	ISM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	1258	3	1258	-3	3prime_fragment	FALSE	canonical	3	240	junction_1	16.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTGTGTCTGTGTTTGTA	NA	False	NA	NA	False	GATAAA	-6	NA	89769532	89753865	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_89755447_89756571_89760027_89768979
ES_00056224	chr8	-	3034	4	Intergenic	novelGene_3979	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	63	junction_3	28.3901391331568	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCGTTTTCGTTCGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	89779692	89771852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89774422_89775330_89775532_89776215_89776356_89779568
ES_00056227	chr8	-	1393	3	Intergenic	novelGene_3985	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	120	junction_1	12	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTGTCATGTTGTT	NA	False	NA	NA	False	AATAAA	-23	NA	89779684	89774454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89775532_89776215_89776356_89779508
ES_00056228	chr8	-	457	1	FSM	ENSMUSG00000069962.4	ENSMUST00000093326.4	615	1	-28	186	-28	-186	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAATGTATGGAATGTG	NA	False	NA	NA	False	NA	NA	NA	89914216	89913759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89913800_89914200
ES_00056229	chr8	-	1109	6	FSM	ENSMUSG00000043668.14	ENSMUST00000176616.8	1109	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	2.48193472919817	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAATACTTGAAGGC	NA	False	NA	NA	False	TATAAA	-19	NA	91074759	90979333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_90979361_90980902_90981131_90984502_90984773_90996856_90997109_91001259_91001323_91074490
ES_00056231	chr8	-	2200	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_9	146.200581394193	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91860625	91850126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
ES_00056232	chr8	-	2079	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	False	NA	-73	True	AATAAA	-18	NA	91860655	91850196	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ES_00056233	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	False	NA	-9	True	AGTAAA	-12	NA	91860651	91851096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ES_00056237	chr8	-	278	2	FSM	ENSMUSG00000033282.15	ENSMUST00000209564.2	278	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTTTCTTATAAACTTA	NA	False	NA	NA	False	GATAAA	-43	NA	92037045	92034616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_92034815_92036965
ES_00056238	chr8	-	814	4	FSM	ENSMUSG00000031736.12	ENSMUST00000178064.9	818	4	0	4	0	1	multi-exon	FALSE	canonical	3	11	junction_3	2.16024689946929	1571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACATGTTTGTTTGTGTA	6471	False	NA	NA	False	AATAAA	-17	NA	93073498	93052664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_93053091_93071480_93071668_93072977_93073092_93073411
ES_00056240	chr8	-	3811	14	FSM	ENSMUSG00000031751.15	ENSMUST00000053766.14	3880	14	69	0	69	0	multi-exon	TRUE	canonical	3	217	junction_1	15.7862947074897	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTTCCATTTCAGATG	NA	False	NA	-5	True	AATAAA	-17	NA	94739401	94698215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_94699943_94700686_94700872_94701363_94701448_94702661_94702797_94706945_94707050_94709939_94710131_94711461_94711573_94711966_94712101_94714001_94714135_94714346_94714388_94725725_94725879_94726932_94727098_94731760_94731854_94738846
ES_00056241	chr8	-	5010	7	FSM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	0	0	0	0	multi-exon	FALSE	canonical	3	2190	junction_4	118.898649651242	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	AATAAA	-17	NA	94763659	94742123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
ES_00056243	chr8	-	2678	17	FSM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	389	-3	389	3	multi-exon	FALSE	canonical	1	2	junction_15	7.54569413639329	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGTTTATAAATTACC	NA	False	NA	0	True	AATAAA	-18	NA	94825167	94794578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
ES_00056246	chr8	-	1787	9	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	1464	intron_retention	FALSE	non_canonical	0	0	junction_1	181.628010986742	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAAGACATGCACGCAC	3895	False	NA	NA	False	NA	NA	NA	95328320	95299301	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95299327_95301571_95302486_95306027_95306093_95309511_95309642_95313950_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ES_00056247	chr8	-	2838	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	0	35	0	-35	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGACGTTTAGGTAAA	3590	False	NA	NA	False	NA	NA	NA	95328625	95300800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ES_00056253	chr8	-	1372	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	0	554	0	263	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAGGGGTTATCATTC	417	False	NA	-4	True	AATAAA	-16	NA	95422906	95402075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
ES_00056254	chr8	-	4347	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	0	12	0	-12	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATCAGAATCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	95564986	95546443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
ES_00056255	chr8	-	1807	9	FSM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_8	506.411394026635	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564893	95549188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564581
ES_00056259	chr8	-	1195	5	ISM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	70	5436	70	5260	5prime_fragment	FALSE	canonical	3	7	junction_4	3.89711431702997	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCGCAAGATGGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	95644656	95634932	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95644609
ES_00056262	chr8	-	3277	20	FSM	ENSMUSG00000031788.15	ENSMUST00000034240.15	3277	20	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_2	24.0325264354334	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAATCTGAATCGTCAGT	NA	False	NA	-4	True	ATTAAA	-21	NA	95869175	95826455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95869059
ES_00056266	chr8	-	7205	2	FSM	ENSMUSG00000046556.8	ENSMUST00000057717.8	7232	2	0	27	0	-27	multi-exon	FALSE	canonical	3	26	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTAATAAAAAGCATA	NA	False	NA	NA	False	NA	NA	NA	96058578	96049665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96056441_96058148
ES_00056267	chr8	-	2551	4	FSM	ENSMUSG00000031796.8	ENSMUST00000213086.2	2544	4	0	-7	0	4	multi-exon	FALSE	canonical	3	502	junction_2	10.6562449087639	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTACTTTTTTATATGAT	NA	False	NA	-2	True	AATAAA	-28	NA	96161472	96146872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96148875_96149410_96149523_96151244_96151325_96161115
ES_00056268	chr8	-	1299	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	-4	0	4	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTACTTTTTTATATGAT	NA	False	NA	-2	True	AATAAA	-28	NA	96161497	96146872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
ES_00056271	chr8	-	6779	11	FSM	ENSMUSG00000046707.10	ENSMUST00000212214.2	6779	11	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_10	28.5350661467605	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGATGGAGCGTATTTA	NA	False	NA	-6	True	AATAAA	-13	NA	96215408	96174601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96214971
ES_00056273	chr8	-	8390	49	FSM	ENSMUSG00000036550.17	ENSMUST00000098473.11	8390	49	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_30	244.612610932232	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGAGCCACCATGTGG	NA	False	NA	NA	False	NA	NA	NA	96534090	96446078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056274	chr8	-	8371	49	FSM	ENSMUSG00000036550.17	ENSMUST00000211887.2	8364	49	0	-7	0	0	multi-exon	FALSE	canonical	3	77	junction_46	316.132422148272	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGAGCCACCATGTGG	NA	False	NA	NA	False	NA	NA	NA	96534092	96446078	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501351_96501906_96502015_96515257_96515533_96533960
ES_00056275	chr8	-	7666	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	13	combination_of_known_junctions	FALSE	canonical	3	313	junction_31	280.538170184657	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGGGTTTGTGTAAAG	NA	False	NA	-5	True	AATATA	-26	NA	96534061	96446770	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481737_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056276	chr8	-	7654	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	13	combination_of_known_junctions	FALSE	canonical	3	469	junction_30	257.98436106779	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGGGTTTGTGTAAAG	NA	False	NA	-5	True	AATATA	-26	NA	96534061	96446770	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056277	chr8	-	7651	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	77	junction_46	305.67686094301	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTGAAACTTCTTGG	NA	False	NA	-17	True	AATATA	-14	NA	96534061	96446782	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501351_96501906_96502015_96515257_96515533_96533960
ES_00056278	chr8	-	7660	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	325.564507070241	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTGAAACTTCTTGG	NA	False	NA	-17	True	AATATA	-14	NA	96534061	96446782	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481737_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056279	chr8	-	7639	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	313	junction_31	292.082375622538	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTGAAACTTCTTGG	NA	False	NA	-17	True	AATATA	-14	NA	96534061	96446782	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481737_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056280	chr8	-	7707	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	284.722571476751	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTGAAACTTCTTGG	NA	False	NA	-17	True	AATATA	-14	NA	96534090	96446782	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056281	chr8	-	7704	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	13	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	296.058006674321	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGGGTTTGTGTAAAG	NA	False	NA	-5	True	AATATA	-26	NA	96534090	96446770	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ES_00056283	chr8	-	1546	1	FSM	ENSMUSG00000036550.17	ENSMUST00000212535.2	1546	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCCGACCCCTTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	96459364	96457818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96457800_96459400
ES_00056288	chr8	-	338	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	187	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544306	96535179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96535388_96539051_96539129_96544253
ES_00056290	chr8	-	3275	13	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.7773749669282	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580150	96562547	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_96563104_96563130_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ES_00056291	chr8	-	3316	12	FSM	ENSMUSG00000036534.7	ENSMUST00000040481.4	3333	12	17	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	95.4970468151409	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580150	96562547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580099
ES_00056292	chr8	-	2463	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	66	1	66	-1	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	-5	True	AATAAA	-16	NA	96615109	96590762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ES_00056295	chr8	-	954	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGTCAAAGCAACCAAGTC	NA	False	NA	NA	False	NA	NA	NA	103592430	103591476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_103591500_103592400
ES_00056296	chr8	-	2396	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	5	5	-2	-5	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATTTTCATTCATTCA	NA	False	NA	1	True	AATAAA	-25	NA	104975185	104953321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
ES_00056297	chr8	-	2322	9	FSM	ENSMUSG00000035824.8	ENSMUST00000211995.2	2312	9	0	-10	0	-3	multi-exon	FALSE	canonical	3	18	junction_4	19.1012924955355	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTTTCATTCATTCATT	NA	False	NA	3	True	AATAAA	-27	NA	104975183	104953319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
ES_00056299	chr8	-	4624	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	3	0	3	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTTTGGTGACTTTGTT	1771	False	NA	-1	True	AATAAA	-20	NA	105169676	105144311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
ES_00056300	chr8	-	1805	21	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	0	27371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.929716744954	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATGACTATTAGGGTG	3362	False	NA	NA	False	NA	NA	NA	105261240	105210288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_105210315_105237659_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ES_00056301	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	AATAAA	-19	NA	105261268	105237659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ES_00056302	chr8	-	1808	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3333	False	NA	NA	False	AATAAA	-19	NA	105261269	105237659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ES_00056305	chr8	-	652	5	NNC	ENSMUSG00000031879.15	novel	918	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	327.680484618782	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGCGTCTCTCATAG	NA	False	NA	0	True	AATAAA	-28	NA	105368331	105366469	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942_105368021_105368178
ES_00056306	chr8	-	810	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	0	-3	0	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGCGTCTCTCATAG	NA	False	NA	0	True	AATAAA	-28	NA	105368331	105366469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
ES_00056307	chr8	-	1699	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	0	-10	0	10	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTTTAATCCTATTTAGC	505	False	NA	NA	False	NA	NA	NA	105991241	105984907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
ES_00056308	chr8	-	613	3	FSM	ENSMUSG00000031887.14	ENSMUST00000147670.2	610	3	-3	0	3	0	multi-exon	FALSE	canonical	2	3	junction_1	23.5	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGACTGATGAAGAGCGC	508	False	NA	NA	False	NA	NA	NA	105991238	105986388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105986797_105987153_105987313_105991192
ES_00056310	chr8	-	3402	7	FSM	ENSMUSG00000014837.16	ENSMUST00000014981.8	3492	7	90	0	90	0	multi-exon	FALSE	canonical	3	11	junction_6	11.0302614051829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	-2	True	NA	NA	NA	106016406	106007040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
ES_00056311	chr8	-	1946	8	NNC	ENSMUSG00000014837.16	novel	3552	8	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	14.059639731791	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCTTTGGGTGTCTGGT	NA	False	NA	NA	False	AATAGA	-42	NA	106016119	106008312	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015694_106015798_106016035
ES_00056312	chr8	-	2164	13	FSM	ENSMUSG00000043251.7	ENSMUST00000212777.2	2161	13	0	-3	0	1	multi-exon	FALSE	canonical	1	4	junction_11	8.1594355741613	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGAATCTATGTGTTGG	NA	False	NA	0	True	AATAAA	-16	NA	106022572	106016554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106022257_106022339_106022537
ES_00056313	chr8	-	3914	22	FSM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	14	0	14	0	multi-exon	FALSE	canonical	0	0	junction_10	2.64789309989673	451	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGCCTTTCTCTTCTTT	NA	False	NA	-1	True	AATAAA	-19	NA	106074571	106055794	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106056112_106056200_106056402_106056478_106056642_106056726_106056920_106057018_106057210_106057760_106057923_106058001_106058122_106058273_106058457_106058668_106058825_106059541_106060237_106061318_106061435_106063013_106063194_106063270_106063429_106063518_106063663_106063754_106063850_106063949_106064062_106064306_106064402_106064483_106064590_106064661_106064730_106065033_106065099_106065485_106065593_106074284
ES_00056314	chr8	-	1057	4	FSM	ENSMUSG00000014846.13	ENSMUST00000014990.13	1127	4	71	-1	71	1	multi-exon	FALSE	canonical	2	4	junction_3	3.55902608401044	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTGACTCAGTCTACAG	NA	False	NA	1	True	AATAAA	-20	NA	106198087	106194123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106194657_106194787_106194942_106195071_106195266_106197911
ES_00056315	chr8	-	1629	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292679	106251096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
ES_00056316	chr8	-	499	2	FSM	ENSMUSG00000013160.8	ENSMUST00000144486.2	499	2	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTACTCTCCCATTGCT	NA	False	NA	NA	False	NA	NA	NA	106266108	106257282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106257626_106265952
ES_00056318	chr8	-	3154	11	FSM	ENSMUSG00000038000.11	ENSMUST00000042608.8	3154	11	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	13.7637204272682	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAATGTTATCCGGGTGA	NA	False	NA	NA	False	AATAAA	-12	NA	106427716	106423050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ES_00056322	chr8	-	1367	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434777	106430283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
ES_00056323	chr8	-	1689	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	0	-121	0	121	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGATCGGGGCTGGGACA	NA	False	NA	NA	False	NA	NA	NA	106434777	106430161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
ES_00056324	chr8	-	1319	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434842	106430283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
ES_00056325	chr8	-	1794	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212061.2	1673	6	0	-121	0	121	multi-exon	FALSE	canonical	3	158	junction_2	12.3838604643302	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGATCGGGGCTGGGACA	NA	False	NA	NA	False	NA	NA	NA	106434842	106430161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106430654_106430744_106430882_106430982_106431393_106433197_106433371_106434180_106434376_106434455
ES_00056326	chr8	-	464	1	ISM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	44155	192	44087	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAGGACTGGAAA	NA	False	NA	NA	False	NA	NA	NA	106441141	106440677	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_106440700_106441100
ES_00056328	chr8	-	5212	14	FSM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	97	-1	-48	1	multi-exon	FALSE	canonical	3	41	junction_3	8.84180495107755	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCTGTTGTTCAGAATC	NA	False	NA	0	True	ATTAAA	-20	NA	106553885	106494938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258_106513427_106532163_106532217_106552709_106552822_106553581
ES_00056330	chr8	-	1808	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	14	-8	14	4	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	106578672	106571300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ES_00056335	chr8	-	634	5	NNC	ENSMUSG00000031897.10	novel	554	4	NA	NA	3	21751	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.449449495916	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACTAACTGGCTTGGCA	NA	False	NA	NA	False	NA	NA	NA	106663667	106640615	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106640698_106662366_106662538_106662627_106662780_106663327_106663387_106663497
ES_00056336	chr8	-	613	3	FSM	ENSMUSG00000031896.8	ENSMUST00000212561.2	657	3	44	0	44	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACGAGGCACTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	106660043	106659205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106659320_106659455_106659692_106659780
ES_00056337	chr8	-	664	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	0	-18	0	9	multi-exon	FALSE	canonical	3	246	junction_1	9	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGTCTTTCTTGAGAG	NA	False	NA	2	True	AATAAA	-29	NA	106663659	106662357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106662538_106662627_106662780_106663327
ES_00056338	chr8	-	564	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	0	-10	0	9	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGTCTTTCTTGAGAG	NA	False	NA	2	True	AATAAA	-29	NA	106663670	106662357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
ES_00056339	chr8	-	1324	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	0	-13	0	9	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGTCTTTCTTGAGAG	NA	False	NA	2	True	AATAAA	-29	NA	106665076	106662357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
ES_00056341	chr8	-	3753	24	FSM	ENSMUSG00000017765.18	ENSMUST00000116429.9	3755	24	0	2	0	1	multi-exon	FALSE	canonical	3	126	junction_15	19.3746272602721	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGCTGCTCCGGCTCT	NA	False	NA	-3	True	AATAAA	-19	NA	106692676	106670223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692556
ES_00056344	chr8	-	2179	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	88	-5	88	5	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGATTTCTTTTTCTT	NA	False	NA	-4	True	AATAAA	-22	NA	106738426	106736247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106736200_106738400
ES_00056345	chr8	-	3536	15	FSM	ENSMUSG00000084128.11	ENSMUST00000115979.9	3536	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_13	4.96929346597888	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGCTCTACATGTTAA	NA	False	NA	NA	False	TATAAA	-19	NA	106863606	106856950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036_106859236_106859326_106859540_106859640_106859943_106860082_106860126_106860204_106860338_106860410_106860522_106860591_106860647_106860865_106860965_106861241_106861357_106861454_106861569_106862988_106863118_106863201
ES_00056347	chr8	-	1520	5	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	5	279	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	49.2512690191837	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937552	106927069	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996_106937264_106937350
ES_00056348	chr8	-	1246	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
ES_00056349	chr8	-	1333	4	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	intron_retention	FALSE	canonical	3	127	junction_1	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996
ES_00056351	chr8	-	201	2	Antisense	novelGene_ENSMUSG00000060098.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	146	junction_1	0	121	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCACCAGGCCGGGCGGT	NA	False	NA	NA	False	AAAAAG	-1	NA	106949709	106934874	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_106935025_106949658
ES_00056353	chr8	-	524	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	-103	-79	-103	79	mono-exon	FALSE	NA	NA	NA	NA	NA	753	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAACAAGCCAGGCGTG	NA	False	NA	NA	False	NA	NA	NA	107300085	107299561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107299600_107300100
ES_00056354	chr8	-	225	2	Antisense	novelGene_ENSMUSG00000041949.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	150	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGACCCGGGCCTGGTA	NA	False	NA	NA	False	AAAAAG	-11	NA	107551452	107493975	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_107494004_107551255
ES_00056355	chr8	-	226	3	Antisense	novelGene_ENSMUSG00000041949.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	720	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGACCCGGGCCTGGTA	NA	False	NA	NA	False	AAAAAG	-11	NA	107559583	107493975	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_107494004_107551255_107551402_107559531
ES_00056356	chr8	-	2931	4	FSM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	18.5472369909914	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGCTTGTTTTTTTTA	NA	False	NA	0	True	AATAAA	-44	NA	107620225	107610494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107620132
ES_00056357	chr8	-	694	4	FSM	ENSMUSG00000046691.15	ENSMUST00000176515.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	154.848312874245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCTCCTTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	107620233	107612753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107613159_107613551_107613684_107613932_107613989_107620132
ES_00056359	chr8	-	340	1	FSM	ENSMUSG00000074108.2	ENSMUST00000098432.2	645	1	-39	344	-39	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTTGTCTTGTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	107655084	107654744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107654700_107655100
ES_00056360	chr8	-	245	2	Antisense	novelGene_ENSMUSG00000041308.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	335	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAATAATCTATTCCAATT	NA	False	NA	NA	False	NA	NA	NA	107727766	107706989	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_107707183_107727714
ES_00056362	chr8	-	3150	6	FSM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	0	-196	0	190	multi-exon	FALSE	canonical	3	27	junction_1	47.5116827738189	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTATTGGAGGACTGTGA	NA	False	NA	NA	False	AGTAAA	-15	NA	107783316	107772730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107773904_107775414_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ES_00056363	chr8	-	1437	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	66	-197	66	197	multi-exon	FALSE	canonical	3	275	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACATAATTGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	107775180	107772954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107773904_107774692
ES_00056364	chr8	-	4476	5	FSM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	10.356157588604	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107783321	107772920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ES_00056365	chr8	-	2675	10	FSM	ENSMUSG00000031921.18	ENSMUST00000068421.13	2667	10	0	-8	0	6	multi-exon	FALSE	canonical	3	17	junction_3	7.27247474309048	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGGTTCTTGGCAGTG	NA	False	NA	6	True	ATTAAA	-23	NA	107823177	107796025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ES_00056367	chr8	-	2471	7	FSM	ENSMUSG00000031921.18	ENSMUST00000116425.3	2471	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	4.88762609953839	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGTCCTTGCGTGATA	NA	False	NA	1	True	NA	NA	NA	107823179	107802148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ES_00056368	chr8	-	1986	7	ISM	ENSMUSG00000031921.18	ENSMUST00000068388.15	1915	11	33	6005	33	386	5prime_fragment	FALSE	canonical	3	17	junction_1	8.76387788342327	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTACGGAGTCTGCAGT	NA	False	NA	NA	False	NA	NA	NA	107823113	107802564	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ES_00056370	chr8	-	585	2	Genic_Genomic	ENSMUSG00000057657.5	novel	456	1	NA	NA	-46	16572	multi-exon	FALSE	non_canonical	0	0	junction_1	0	561	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGGTGGAGATTACCCA	NA	False	NA	NA	False	NA	NA	NA	107989926	107972852	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_107972877_107989365
ES_00056373	chr8	-	2138	6	FSM	ENSMUSG00000003848.15	ENSMUST00000170796.8	2137	6	0	-1	0	1	multi-exon	FALSE	canonical	3	448	junction_3	31.3585713960314	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTTTATTTGGGA	NA	False	NA	1	True	AATAAA	-18	NA	108148194	108139116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_108139816_108142737_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113
ES_00056374	chr8	-	1662	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	0	-4	0	1	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTTTATTTGGGA	NA	False	NA	1	True	AATAAA	-18	NA	108151681	108139116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ES_00056375	chr8	-	457	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	-8	0	8	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTATCGCTTCTATGAA	NA	False	NA	NA	False	AATAAA	-45	NA	108166211	108165754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_108165800_108166200
ES_00056378	chr8	-	2740	2	Intergenic	novelGene_4009	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTGCCTTGGTCGTGGT	NA	False	NA	NA	False	NA	NA	NA	108408904	108404230	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_108406856_108408789
ES_00056379	chr8	-	219	1	FSM	ENSMUSG00000110508.2	ENSMUST00000212585.2	219	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAATGCCAAAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	108417476	108417257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_108417300_108417500
ES_00056380	chr8	-	1116	1	FSM	ENSMUSG00000110528.2	ENSMUST00000211890.2	174	1	-45	-897	-45	897	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTGTGTGTACAA	NA	False	NA	NA	False	NA	NA	NA	110067541	110066425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110066400_110067500
ES_00056382	chr8	-	4459	27	NNC	ENSMUSG00000037993.9	novel	4463	27	NA	NA	-1	-2	at_least_one_novel_splicesite	TRUE	canonical	3	48	junction_24	18.695314731221	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTGCATTTTAAATCT	NA	False	NA	-4	True	AATAAA	-17	NA	110292494	110274644	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288037_110288580_110288769_110289075_110289416_110292122
ES_00056383	chr8	-	305	2	FSM	ENSMUSG00000031730.19	ENSMUST00000125222.2	305	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCAGAGTCACTGTGT	NA	False	NA	NA	False	NA	NA	NA	110320683	110319878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110320063_110320562
ES_00056384	chr8	-	2039	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	0	0	0	0	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335255	110320108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ES_00056385	chr8	-	1894	9	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	1	23	junction_8	169.433615318803	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335298	110320108	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110335171
ES_00056387	chr8	-	2320	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	0	-16	0	16	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGAATTTGGATTTTAG	NA	False	NA	3	True	AATAAA	-36	NA	110419892	110397940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ES_00056388	chr8	-	3653	9	FSM	ENSMUSG00000031729.7	ENSMUST00000212973.2	3633	9	0	-20	0	16	multi-exon	FALSE	canonical	3	528	junction_2	54.85990680816	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGAATTTGGATTTTAG	NA	False	NA	3	True	AATAAA	-36	NA	110419892	110397940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110399274_110402007_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ES_00056389	chr8	-	1280	5	FSM	ENSMUSG00000031729.7	ENSMUST00000212170.2	1280	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	272.090403175121	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTTCCCCATAGCATG	NA	False	NA	NA	False	NA	NA	NA	110404226	110398404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110399274_110402007_110402057_110402274_110402435_110403389_110403483_110404117
ES_00056392	chr8	-	2445	3	FSM	ENSMUSG00000001672.15	ENSMUST00000051430.7	2447	3	5	-3	5	3	multi-exon	TRUE	canonical	0	0	junction_2	1	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGCCTTGGATTTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110688830	110679539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110681374_110686344_110686473_110688347
ES_00056393	chr8	-	1163	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15130	9	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGTCGTGGGCCACA	NA	False	NA	-3	True	AATAAA	-31	NA	110879708	110869160	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
ES_00056394	chr8	-	1440	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	0	-9	0	9	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGTCGTGGGCCACA	7616	False	NA	-3	True	AATAAA	-31	NA	110894838	110869160	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
ES_00056396	chr8	-	652	3	Antisense	novelGene_ENSMUSG00002075592.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	156	junction_2	25.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGGTATTTGGTCATAT	9335	False	NA	1	True	TATAAA	-30	NA	111248803	111221979	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_111222416_111227500_111227611_111248697
ES_00056397	chr8	-	1789	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13312	0	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_6	7.54247233265651	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGATGGTGAACCTGGA	NA	False	NA	-12	True	ATTAAA	-27	NA	111482642	111468460	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
ES_00056398	chr8	-	4528	26	FSM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	0	-3	0	3	multi-exon	FALSE	canonical	3	597	junction_23	101.482656646345	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGCCACTGTGAAATC	NA	False	NA	-15	True	ATTAAA	-25	NA	111573408	111536867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
ES_00056399	chr8	-	2957	13	FSM	ENSMUSG00000033732.11	ENSMUST00000212515.2	2957	13	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_10	76.148794402071	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAATTAAATTTAA	NA	False	NA	NA	False	AAAAAG	-17	NA	111573419	111551066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
ES_00056402	chr8	-	3847	24	FSM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	3	-12	3	5	multi-exon	TRUE	canonical	3	94	junction_23	12.3354193641104	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTTTGCTGGGAGAAA	1246	False	NA	5	True	AATAAA	-31	NA	111629088	111609082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
ES_00056404	chr8	-	2547	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7686	False	NA	-28	True	ATTAAA	-10	NA	111724432	111701627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ES_00056405	chr8	-	731	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATGGAATGTTAAAGT	7716	False	NA	NA	False	NA	NA	NA	111724402	111707104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ES_00056406	chr8	-	6616	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	0	-4	0	4	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTATTTTGTCTGCATTA	NA	False	NA	-1	True	AATAAA	-21	NA	111754396	111729815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
ES_00056407	chr8	-	3104	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACTGTGGATCAAACT	NA	False	NA	NA	False	AATAAA	-12	NA	111758383	111733290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
ES_00056408	chr8	-	1712	12	NNC	ENSMUSG00000033658.17	novel	3104	12	NA	NA	32	-1358	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_11	103.037584412936	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGTCCCATCTTTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	111758351	111734648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758255
ES_00056409	chr8	-	8145	26	FSM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	0	-1124	0	1124	multi-exon	TRUE	canonical	3	407	junction_22	36.1425178978997	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGTAATAAGTGGAGGG	6428	False	NA	2	True	AATAAA	-30	NA	111985848	111879928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111884694_111886430_111886538_111887252_111887374_111888057_111888166_111888998_111889101_111889269_111889413_111890402_111890527_111892188_111892327_111895292_111895386_111896119_111896238_111897861_111897951_111899046_111899161_111899833_111899897_111900865_111900953_111904276_111904415_111905464_111905619_111907566_111907669_111909162_111909285_111914345_111914561_111915298_111915483_111917821_111917894_111919155_111919360_111924224_111924441_111926767_111926855_111928157_111928191_111985402
ES_00056411	chr8	-	5041	27	NNC	ENSMUSG00000031959.16	novel	4896	27	NA	NA	0	16	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.3961047062859	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTGATGTCCTTTGT	NA	False	NA	-3	True	AGTAAA	-32	NA	112248702	112175412	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_112176728_112176763_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ES_00056414	chr8	-	3232	7	FSM	ENSMUSG00000031955.11	ENSMUST00000166232.4	3142	7	-85	-5	-85	5	multi-exon	FALSE	canonical	3	36	junction_6	42.5597619040959	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAGAAATGCTTGAGACT	NA	False	NA	3	True	AATAAA	-22	NA	112470526	112437100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112470320
ES_00056419	chr8	-	2984	7	FSM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	6.79256129077161	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	-4	True	ATTAAA	-15	NA	112660513	112638642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
ES_00056421	chr8	-	3168	10	FSM	ENSMUSG00000031949.18	ENSMUST00000034427.12	3159	10	0	-9	0	9	multi-exon	FALSE	canonical	3	33	junction_1	12.5521135891752	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTTAATTACTTATTT	NA	False	NA	-1	True	ATTAAA	-14	NA	112718934	112693530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
ES_00056422	chr8	-	2762	9	FSM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	9.81070843517429	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGGGTGACTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	112718934	112697496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
ES_00056423	chr8	-	2131	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
ES_00056424	chr8	-	2189	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
ES_00056425	chr8	-	2008	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737955	112720074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
ES_00056427	chr8	-	691	1	FSM	ENSMUSG00000092086.3	ENSMUST00000071732.7	1056	1	-53	418	-53	-418	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTGGAGGAAGAGGTG	NA	False	NA	NA	False	NA	NA	NA	112741693	112741002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112741000_112741700
ES_00056428	chr8	-	437	1	FSM	ENSMUSG00000110620.2	ENSMUST00000212988.2	437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATCCAAATGTGAGG	9347	False	NA	NA	False	NA	NA	NA	116698810	116698373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_116698400_116698800
ES_00056429	chr8	-	8431	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	-343	-5677	-343	5677	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCGTTTGTTTGTGTCCC	1426	False	NA	-2	True	AATAAA	-16	NA	117460073	117295461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
ES_00056430	chr8	-	7964	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59800	5676	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCCGTTTGTTTGTGTCC	NA	False	NA	-3	True	AATAAA	-15	NA	117399930	117295462	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
ES_00056432	chr8	-	777	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	-254	0	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	117648178	117616017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_117616599_117637866_117637974_117648089
ES_00056434	chr8	-	2976	3	FSM	ENSMUSG00000031847.9	ENSMUST00000070577.7	2976	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTCTCTCACTGTTTCT	8541	False	NA	NA	False	AATAAA	-28	NA	117705682	117696332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_117698896_117700190_117700439_117705517
ES_00056436	chr8	-	1443	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGGTGTGGTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	117720276	117708548	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
ES_00056437	chr8	-	2967	14	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	53633	-219	27	219	3prime_fragment	FALSE	canonical	3	6	junction_4	7.94731170356426	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACGGAACAATTAATTCATT	NA	False	NA	NA	False	AATAAA	-19	NA	117755555	117722198	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017
ES_00056439	chr8	-	1079	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	-11	0	11	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTAGTCTTCCTCAGT	NA	False	NA	-1	True	AATAAA	-33	NA	118528682	118518372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
ES_00056441	chr8	-	4204	23	FSM	ENSMUSG00000031835.17	ENSMUST00000081381.6	4195	23	0	-9	0	9	multi-exon	FALSE	canonical	3	394	junction_22	51.0282088571954	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGTCGTGCCCCAGCC	8141	False	NA	2	True	AATAAA	-23	NA	120285474	120234885	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
ES_00056443	chr8	-	3152	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	0	-11	0	11	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGAGGGTCTTTTTCTTTC	NA	False	NA	1	True	AATAAA	-30	NA	120301922	120288716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
ES_00056444	chr8	-	423	3	FSM	ENSMUSG00000034189.6	ENSMUST00000212065.2	423	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	51.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACTTCAGCAGAGGCC	NA	False	NA	NA	False	NA	NA	NA	120301920	120293065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_120293214_120294504_120294690_120301830
ES_00056446	chr8	-	1154	5	NNC	ENSMUSG00000031832.16	novel	3474	14	NA	NA	1694	20583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.0337272494529	180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCAATTTGTAAAGATCA	2774	False	NA	NA	False	NA	NA	NA	120330251	120304026	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_120304060_120328842_120329644_120329728_120329819_120329888_120329987_120330119
ES_00056449	chr8	-	1246	6	ISM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	-11	4195	-11	-2542	5prime_fragment	FALSE	canonical	3	55	junction_3	5.2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	1053	False	NA	NA	False	NA	NA	NA	120331972	120328908	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
ES_00056450	chr8	-	3118	8	FSM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	-31	-2	-31	2	multi-exon	TRUE	canonical	3	25	junction_5	4.74664220738176	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTAGCAGGCTTGGTG	NA	False	NA	NA	False	AATAAA	-22	NA	120505186	120486812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120505098
ES_00056453	chr8	-	962	5	FSM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	-45	2983	-45	-72	multi-exon	FALSE	canonical	3	1091	junction_3	31.7125763696361	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTAAGGTTGCTGCCCG	NA	False	NA	NA	False	NA	NA	NA	121316088	121308354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
ES_00056454	chr8	-	3662	4	FSM	ENSMUSG00000031821.12	ENSMUST00000146526.8	3662	4	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_3	35.3647658929996	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTTCAGCCTAGTGCAA	NA	False	NA	NA	False	AATAAA	-21	NA	121315719	121305371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463
ES_00056455	chr8	-	875	4	FSM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	-31	0	-31	0	multi-exon	FALSE	canonical	3	48	junction_3	5.09901951359278	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCGGGTCCTGGTTTTTG	NA	False	NA	-1	True	AATAAA	-13	NA	121361262	121335340	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121361006
ES_00056457	chr8	-	4943	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	0	-1	0	1	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCTCTGTGTTCATCC	NA	False	NA	1	True	AATAAA	-24	NA	121394860	121380651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
ES_00056460	chr8	-	2277	8	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	0	-7	intron_retention	FALSE	canonical	3	48	junction_5	13.1413042560859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTAAGCTGCTTGTAT	NA	False	NA	-18	True	NA	NA	NA	121835052	121824302	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ES_00056465	chr8	-	411	2	Intergenic	novelGene_4022	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_1	0	46	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGTGAGGTTATGGTTGT	NA	False	NA	-12	True	TTTAAA	-19	NA	122106319	122105776	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_122106116_122106247
ES_00056468	chr8	-	4355	9	FSM	ENSMUSG00000052934.15	ENSMUST00000059018.14	4358	9	0	3	0	-3	multi-exon	FALSE	canonical	3	287	junction_2	20.0962527601541	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTGACTTGTTTCTCGG	NA	False	NA	NA	False	AGTAAA	-18	NA	122305545	122276181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_122279185_122280843_122281191_122281944_122282099_122282980_122283091_122285758_122285834_122286661_122286830_122287124_122287202_122293013_122293086_122305196
ES_00056469	chr8	-	869	3	FSM	ENSMUSG00000052934.15	ENSMUST00000180539.2	845	3	0	-24	0	24	multi-exon	FALSE	canonical	3	321	junction_1	0.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCGTGTGCTGAGGCCCA	NA	False	NA	NA	False	NA	NA	NA	122286702	122282337	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_122283091_122285758_122285834_122286661
ES_00056471	chr8	-	2607	2	FSM	ENSMUSG00000061410.7	ENSMUST00000154725.2	2607	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTTAAGTTTTCTGTT	NA	False	NA	NA	False	AAGAAA	-6	NA	122331253	122327088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_122328989_122330546
ES_00056474	chr8	-	1513	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20942	-716	3512	716	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCCAACTGACTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	122650701	122642148	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
ES_00056475	chr8	-	217	2	Antisense	novelGene_ENSMUSG00000099140.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTGTTTCTTATAGCT	NA	False	NA	NA	False	NA	NA	NA	122733074	122667278	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_122667372_122732950
ES_00056476	chr8	-	1096	1	FSM	ENSMUSG00000091952.4	ENSMUST00000174536.2	1096	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCATTCTTGTAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	122700561	122699465	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_122699500_122700600
ES_00056478	chr8	-	645	5	FSM	ENSMUSG00000006519.12	ENSMUST00000212600.2	638	5	0	-7	0	7	multi-exon	FALSE	canonical	2	6	junction_2	360.755110843908	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTCTCCATATGAGGC	NA	False	NA	NA	False	AATAAA	-25	NA	123159647	123151507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123151827_123152924_123153007_123153967_123154043_123154393_123154464_123159548
ES_00056479	chr8	-	751	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	0	-7	0	7	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTCTCCATATGAGGC	NA	False	NA	NA	False	AATAAA	-25	NA	123159669	123151507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
ES_00056481	chr8	-	1838	5	NIC	ENSMUSG00000006519.12	novel	744	6	NA	NA	0	18	intron_retention	FALSE	canonical	3	775	junction_1	47.5341982156005	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGGCTGGGGGAGGGA	NA	False	NA	NA	False	AATAAA	-36	NA	123159647	123151496	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
ES_00056483	chr8	-	1618	3	FSM	ENSMUSG00000006587.7	ENSMUST00000006762.7	1628	3	17	-7	17	7	multi-exon	FALSE	canonical	3	3	junction_2	1	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACGTCTCGAGTCTTTAC	NA	False	NA	NA	False	AATAAA	-34	NA	123187455	123180939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123181774_123182861_123183468_123187277
ES_00056486	chr8	-	8323	51	FSM	ENSMUSG00000014444.18	ENSMUST00000067252.14	8216	51	-107	0	-107	0	multi-exon	FALSE	canonical	3	19	junction_46	26.2908729410037	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTGTCCTCGCCTTCC	6004	False	NA	2	True	AGTAAA	-38	NA	123278175	123208436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045_123213359_123213493_123213683_123213748_123214008_123214213_123214421_123214576_123214684_123214813_123214987_123215072_123215130_123215199_123215294_123215837_123215939_123216293_123216366_123216801_123216903_123216977_123217068_123217593_123217766_123217857_123217955_123218053_123218298_123218397_123218552_123219345_123219451_123221528_123221734_123222155_123222357_123222472_123222599_123223141_123223319_123223478_123223640_123224190_123224304_123224544_123224728_123224889_123225039_123225131_123225311_123225398_123225511_123226366_123226625_123226942_123227044_123227900_123227989_123228068_123228156_123228244_123228417_123228504_123228719_123228860_123229048_123232767_123232907_123233004_123233048_123234361_123234485_123240452_123240549_123277713
ES_00056488	chr8	-	573	3	FSM	ENSMUSG00000006589.9	ENSMUST00000213062.2	560	3	0	-13	0	13	multi-exon	FALSE	canonical	3	1410	junction_2	2	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTTGCATGGGTCACA	NA	False	NA	8	True	AATAAA	-30	NA	123302228	123301360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123301767_123301875_123301955_123302140
ES_00056489	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303629	123301375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
ES_00056490	chr8	-	1034	6	FSM	ENSMUSG00000006589.9	ENSMUST00000213030.2	660	6	-123	-251	-32	0	multi-exon	FALSE	canonical	0	0	junction_4	634.519030447472	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303680	123301375	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302992_123303253_123303361_123303491
ES_00056493	chr8	-	2520	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	42	-5	-17	5	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTCTTTTGTTTGTTT	NA	False	NA	1	True	NA	NA	NA	123338160	123304975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
ES_00056497	chr8	-	9194	13	NIC	ENSMUSG00000035569.18	novel	8455	13	NA	NA	16	501	intron_retention	TRUE	canonical	3	6	junction_8	118.382384200053	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTCCCTTCAGGTAGCC	NA	False	NA	NA	False	NA	NA	NA	123769000	123610059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123616377_123622896_123623298_123623447_123625312_123625456_123626342_123626544_123626717_123626889_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ES_00056498	chr8	-	3032	13	NNC	ENSMUSG00000035569.18	novel	8455	13	NA	NA	16	501	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	107.656346254593	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTCCCTTCAGGTAGCC	NA	False	NA	NA	False	NA	NA	NA	123769000	123610059	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123622542_123622896_123623298_123623447_123625312_123625456_123626342_123626547_123626717_123626889_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ES_00056500	chr8	-	2751	7	ISM	ENSMUSG00000035569.18	ENSMUST00000098334.13	8455	13	-254	13193	3	5	5prime_fragment	FALSE	canonical	3	162	junction_6	36.6409000374657	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCTTTGTTTTCTCTA	NA	False	NA	0	True	AATAAA	-19	NA	123769013	123623753	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_123625456_123626342_123626547_123626717_123626889_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ES_00056502	chr8	-	943	3	FSM	ENSMUSG00000035569.18	ENSMUST00000212937.2	943	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	70.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAAAGTAAATTGTTCT	NA	False	NA	NA	False	AATAAA	-24	NA	123769016	123658247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123658798_123701467_123701532_123768687
ES_00056503	chr8	-	2416	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	0	1389	0	1268	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTACTAGCATGCATCTGA	9743	False	NA	NA	False	NA	NA	NA	123885009	123868319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
ES_00056506	chr8	-	748	6	FSM	ENSMUSG00000000739.15	ENSMUST00000137998.2	748	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	25.334561373744	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACACAGCAGCTTTTCCT	9756	False	NA	NA	False	NA	NA	NA	123884996	123872184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884342_123884926
ES_00056507	chr8	-	2167	8	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	0	8147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.71182264452	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCATTGGATTTCCCCA	9745	False	NA	NA	False	NA	NA	NA	123939499	123922855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_123922886_123931005_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
ES_00056508	chr8	-	2168	8	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	0	8147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.71182264452	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCATTGGATTTCCCCA	9745	False	NA	NA	False	NA	NA	NA	123939499	123922855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_123922887_123931005_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
ES_00056509	chr8	-	2169	8	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	0	8147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.71182264452	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCATTGGATTTCCCCA	9745	False	NA	NA	False	NA	NA	NA	123939499	123922855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_123922888_123931005_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
ES_00056513	chr8	-	2708	15	FSM	ENSMUSG00000001062.19	ENSMUST00000118279.2	2696	15	-13	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_2	7.59195331268843	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTCCATGTGACTTGTT	2292	False	NA	NA	False	AATAAA	-14	NA	123980844	123969098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123969929_123970426_123970535_123971852_123971950_123972245_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416_123977580_123977665_123977759_123979343_123979420_123980726
ES_00056516	chr8	-	4485	43	FSM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_17	20.5305065860605	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTGGCCTTATTGT	NA	False	NA	-4	True	AAGAAA	-17	NA	124045315	123995038	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
ES_00056518	chr8	-	2713	26	FSM	ENSMUSG00000032815.17	ENSMUST00000155488.8	2994	26	0	281	0	-66	multi-exon	FALSE	canonical	3	94	junction_1	14.8498619522203	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGTGTTTCACATTCCAG	NA	False	NA	NA	False	AAAAAG	-1	NA	124045299	124013208	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124040113_124043101_124043196_124044800_124044911_124045213
ES_00056520	chr8	-	3163	15	FSM	ENSMUSG00000032815.17	ENSMUST00000118395.2	3274	15	0	111	0	-111	multi-exon	FALSE	canonical	1	3	junction_1	35.0586243720021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCATGAGTTCACGCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	124045299	124028924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_124030734_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
ES_00056522	chr8	-	5683	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	0	125	0	-125	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTGAGTACTTAGCACAC	NA	False	NA	NA	False	NA	NA	NA	124676004	124623986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
ES_00056524	chr8	-	2921	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	0	-9	0	9	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCATCTTATTTATAC	4094	False	NA	45	True	ATTAAA	-24	NA	124747747	124723047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
ES_00056525	chr8	-	2982	5	FSM	ENSMUSG00000038697.16	ENSMUST00000165628.9	2973	5	0	-9	0	9	multi-exon	FALSE	canonical	3	200	junction_4	173.639713199487	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCATCTTATTTATAC	3705	False	NA	45	True	ATTAAA	-24	NA	124748136	124723047	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747927
ES_00056527	chr8	-	3605	7	FSM	ENSMUSG00000050751.15	ENSMUST00000140012.8	3222	7	-169	-214	-169	210	multi-exon	FALSE	canonical	3	72	junction_6	10.4083299973307	799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATATGTATATATATAT	NA	False	NA	NA	False	NA	NA	NA	125161246	125095577	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125106922_125107058_125110933_125111362_125160537
ES_00056530	chr8	-	2910	19	FSM	ENSMUSG00000037300.20	ENSMUST00000231984.2	2905	19	0	-5	0	5	multi-exon	FALSE	canonical	3	107	junction_6	106.569342173807	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	-3	True	ATTAAA	-21	NA	125448707	125398065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00056531	chr8	-	3307	23	FSM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	0	-6	0	5	multi-exon	FALSE	canonical	3	107	junction_6	114.790718661872	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	-3	True	ATTAAA	-21	NA	125448717	125398065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00056532	chr8	-	3156	21	FSM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	0	-8	0	5	multi-exon	FALSE	canonical	3	213	junction_17	74.4114238541368	2398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	-3	True	ATTAAA	-21	NA	125448722	125398065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00056533	chr8	-	2917	19	NIC	ENSMUSG00000037300.20	novel	3148	21	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	125	junction_15	88.9418592170619	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	-3	True	ATTAAA	-21	NA	125448711	125398065	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00056534	chr8	-	3137	21	NIC	ENSMUSG00000037300.20	novel	3301	23	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	107	junction_6	93.2745410066434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCAGTTTGGTCGTTTTGC	NA	False	NA	-4	True	ATTAAA	-20	NA	125448707	125398066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00056537	chr8	-	1704	5	NNC	ENSMUSG00000037300.20	novel	2409	4	NA	NA	-11	12	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	180.045133230532	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTAATTCCTAAATCTGA	NA	False	NA	NA	False	AATAAA	-27	NA	125448733	125434707	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_125435912_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00056539	chr8	-	1362	2	FSM	ENSMUSG00000043068.7	ENSMUST00000055257.7	1338	2	-38	14	-38	-14	multi-exon	FALSE	canonical	2	6	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGAAAGTTTCACCCTCT	NA	False	NA	NA	False	ATTAAA	-6	NA	125478609	125467009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125468041_125478278
ES_00056540	chr8	-	3687	9	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	14	70641	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	671.104954068289	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	125589739	125493042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_125493068_125563699_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ES_00056541	chr8	-	3685	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	13	6	at_least_one_novel_splicesite	FALSE	non_canonical	2	150	junction_1	523.121595885347	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTTTGCCTACATTTAT	NA	False	NA	NA	False	AATAAA	-32	NA	125589740	125563677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ES_00056542	chr8	-	2340	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	0	0	0	0	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCTGATGAGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	125589859	125565226	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ES_00056543	chr8	-	3423	2	FSM	ENSMUSG00000031984.9	ENSMUST00000212808.2	3663	2	0	240	0	-240	multi-exon	FALSE	canonical	3	1845	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGTAAAACTGGGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	125589704	125584668	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_125588011_125589623
ES_00056546	chr8	-	4511	18	NNC	ENSMUSG00000001995.10	novel	6365	21	NA	NA	13314	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_17	55.6842308379477	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGTGTTGCCTGTCTGT	NA	False	NA	0	True	AATAAA	-24	NA	126206135	126144806	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_126146031_126148619_126148702_126149317_126149442_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206007
ES_00056549	chr8	-	6286	21	NNC	ENSMUSG00000001995.10	novel	6586	22	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_19	63.1723634194574	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGAAGCAGTGTTGCCT	NA	False	NA	-6	True	AATAAA	-18	NA	126296495	126144812	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_126146031_126148619_126148702_126149317_126149442_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849_126219405_126246584_126246646_126296393
ES_00056550	chr8	-	6383	30	FSM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_27	8.4550992852775	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTATATAATGATTTTA	NA	False	NA	-19	True	AATAAA	-21	NA	127201804	127152067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619_127155792_127157560_127157643_127160586_127160784_127161536_127161624_127163441_127163592_127165541_127165653_127167492_127167614_127170668_127170741_127170873_127171065_127173778_127173968_127174059_127174322_127174951_127175167_127177402_127177565_127178971_127179070_127179528_127179702_127180537_127180635_127182807_127182944_127183215_127183306_127184402_127184500_127185775_127185912_127188076_127188175_127189921_127189975_127193772_127193922_127196757_127196828_127198040_127198139_127200993
ES_00056551	chr8	-	212	1	FSM	ENSMUSG00000074026.4	ENSMUST00000098307.4	165	1	-111	64	-111	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGGTCTGGAGAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	127203262	127203050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_127203000_127203300
ES_00056552	chr8	-	2801	3	NNC	ENSMUSG00000051495.9	novel	5080	2	NA	NA	-45	83805	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	101	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACACAAAGCCAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	127320770	127231229	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_127231270_127317398_127318568_127319178
ES_00056553	chr8	-	5085	2	FSM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	0	-5	0	5	multi-exon	FALSE	canonical	3	202	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGACCTTTTTTTTAAA	NA	False	NA	0	True	AATAAA	-27	NA	127320725	127315029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_127318568_127319178
ES_00056554	chr8	-	4931	6	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	0	19264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2714.61337210292	892	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAGCAAGCAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	127672590	127638152	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_127638183_127657417_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ES_00056555	chr8	-	4833	7	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	0	19264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3144.76764730807	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAGCAAGCAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	127672590	127638152	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_127638183_127657417_127659974_127660071_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ES_00056557	chr8	-	3506	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	22	-104	0	104	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTGCTGGCTAAGTAC	NA	False	NA	NA	False	NA	NA	NA	127697799	127673817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ES_00056558	chr8	-	3324	10	NIC	ENSMUSG00000033931.10	novel	3424	11	NA	NA	28	-6	combination_of_known_splicesites	TRUE	canonical	2	5	junction_5	53.233239407139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAAGATGCTTAGTGTAA	NA	False	NA	-6	True	ATTAAA	-23	NA	127697771	127673927	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ES_00056559	chr8	-	494	1	FSM	ENSMUSG00000110648.2	ENSMUST00000211855.2	640	1	-38	184	-38	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAGAAGTACGAGAAGGA	NA	False	NA	NA	False	AAGAAA	-13	NA	127709020	127708526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_127708500_127709000
ES_00056561	chr8	-	545	1	Intergenic	novelGene_4029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGAAGTACAATTAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	129480259	129479714	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_129479700_129480300
ES_00056563	chr8	-	4135	4	FSM	ENSMUSG00000071302.11	ENSMUST00000189965.2	343	4	-79	-3713	-79	-28	multi-exon	FALSE	canonical	3	6	junction_3	25.9358182185692	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACTCACACATAAACAGT	NA	False	NA	NA	False	NA	NA	NA	129960966	129942862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_129946633_129948024_129948086_129948304_129948432_129960789
ES_00056564	chr8	+	214	1	Intergenic	novelGene_3853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAATTTTCAAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	4670001	4670215	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_4670000_4670200
ES_00056565	chr8	+	314	1	Intergenic	novelGene_3854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTACTATTTGTTGACCTT	NA	False	NA	NA	False	AATACA	-7	NA	4764467	4764781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_4764500_4764800
ES_00056566	chr8	+	1230	1	Intergenic	novelGene_3856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTTCTTACATAATGT	NA	False	NA	NA	False	NA	NA	NA	5270853	5272083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5270900_5272100
ES_00056567	chr8	+	1221	1	Intergenic	novelGene_3859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTCTCTCTGCTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	5272364	5273585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5272400_5273600
ES_00056568	chr8	+	236	1	Intergenic	novelGene_3863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTTTGCCAAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	9612413	9612649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_9612400_9612600
ES_00056569	chr8	+	204	1	Intergenic	novelGene_3865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCACTATGGTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	11753232	11753436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_11753200_11753400
ES_00056570	chr8	+	203	1	Intergenic	novelGene_3866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGCGAACAACCACACTC	5510	False	NA	NA	False	NA	NA	NA	12762593	12762796	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_12762600_12762800
ES_00056571	chr8	+	267	1	Intergenic	novelGene_3870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAGGGACTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13268355	13268622	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_13268400_13268600
ES_00056572	chr8	+	239	1	Intergenic	novelGene_3872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTTTTAAAGATTT	3588	False	NA	NA	False	NA	NA	NA	13343246	13343485	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_13343200_13343500
ES_00056573	chr8	+	229	1	Intergenic	novelGene_3874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGAGGATACTCTTAAACAT	NA	False	NA	NA	False	NA	NA	NA	14065691	14065920	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_14065700_14065900
ES_00056574	chr8	+	352	1	Intergenic	novelGene_3875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATTACTTTTAAATGCAG	NA	False	NA	NA	False	NA	NA	NA	15569773	15570125	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_15569800_15570100
ES_00056575	chr8	+	318	1	Intergenic	novelGene_3876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCAAAGTTTTCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	15804406	15804724	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_15804400_15804700
ES_00056576	chr8	+	328	1	Intergenic	novelGene_3877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	715	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTGAAAGAAGTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	15809362	15809690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_15809400_15809700
ES_00056577	chr8	+	411	1	Intergenic	novelGene_3883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	514	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCAATGATTAATTACGT	NA	False	NA	NA	False	NA	NA	NA	19484347	19484758	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_19484300_19484800
ES_00056578	chr8	+	205	1	Intergenic	novelGene_3885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACATGGGTTTTCACAC	NA	False	NA	NA	False	NA	NA	NA	19750647	19750852	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_19750600_19750900
ES_00056579	chr8	+	1126	1	Intergenic	novelGene_3889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATGCTTGTGGATCT	NA	False	NA	NA	False	NA	NA	NA	20019136	20020262	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_20019100_20020300
ES_00056580	chr8	+	342	1	Intergenic	novelGene_3894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTGACAGACAGTATACT	NA	False	NA	NA	False	NA	NA	NA	20730608	20730950	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_20730600_20731000
ES_00056581	chr8	+	202	1	Intergenic	novelGene_3902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTCTTTTTAATAGTAT	NA	False	NA	NA	False	NA	NA	NA	24032185	24032387	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_24032200_24032400
ES_00056582	chr8	+	206	1	Intergenic	novelGene_3903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGTTTTTTTGAGACAG	NA	False	NA	NA	False	NA	NA	NA	25960220	25960426	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_25960200_25960400
ES_00056583	chr8	+	211	1	Intergenic	novelGene_3904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCTTGGTTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	26073504	26073715	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_26073500_26073700
ES_00056584	chr8	+	233	1	Intergenic	novelGene_3906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCCTTTTCTGGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	26252710	26252943	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_26252700_26252900
ES_00056585	chr8	+	244	1	Intergenic	novelGene_3907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGAAGTCATAGAATAT	NA	False	NA	NA	False	NA	NA	NA	26358826	26359070	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_26358800_26359100
ES_00056586	chr8	+	243	1	Intergenic	novelGene_3908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCCAGTATCTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	26390689	26390932	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_26390700_26390900
ES_00056587	chr8	+	236	1	Intergenic	novelGene_3909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTTTTATTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	27636836	27637072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_27636800_27637100
ES_00056588	chr8	+	221	1	Intergenic	novelGene_3912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTTTTTGTGTAAGG	NA	False	NA	NA	False	NA	NA	NA	28367501	28367722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_28367500_28367700
ES_00056589	chr8	+	273	1	Intergenic	novelGene_3913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATACCAACTTTCCCAAAG	NA	False	NA	NA	False	NA	NA	NA	32966909	32967182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_32966900_32967200
ES_00056590	chr8	+	230	1	Intergenic	novelGene_3914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACCTTTTAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	33289737	33289967	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_33289700_33290000
ES_00056591	chr8	+	359	1	Intergenic	novelGene_3916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	469	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATCACTTACGTTCTAGG	NA	False	NA	NA	False	NA	NA	NA	34035588	34035947	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_34035600_34035900
ES_00056592	chr8	+	236	1	Intergenic	novelGene_3917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGCTTTTTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	34460544	34460780	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_34460500_34460800
ES_00056593	chr8	+	206	1	Intergenic	novelGene_3918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTCTTTCTGGTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	36967223	36967429	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_36967200_36967400
ES_00056595	chr8	+	215	1	Intergenic	novelGene_3920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATTAAGCACTCTGT	NA	False	NA	NA	False	ACTAAA	-18	NA	38245196	38245411	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_38245200_38245400
ES_00056596	chr8	+	239	1	Intergenic	novelGene_3922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	GGGGCT	-34	NA	41400426	41400665	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_41400400_41400700
ES_00056597	chr8	+	203	1	Intergenic	novelGene_3934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTCAAGCTGAAAATCG	NA	False	NA	NA	False	NA	NA	NA	50640697	50640900	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_50640700_50640900
ES_00056599	chr8	+	1467	1	Intergenic	novelGene_3937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTTTTCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	57259648	57261115	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_57259600_57261100
ES_00056600	chr8	+	518	1	Intergenic	novelGene_3938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTCCTTAAGAAAATTGAT	NA	False	NA	NA	False	NA	NA	NA	57261384	57261902	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_57261400_57261900
ES_00056601	chr8	+	205	1	Intergenic	novelGene_3939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCGAATCGATCCATAC	7157	False	NA	NA	False	NA	NA	NA	61137694	61137899	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_61137700_61137900
ES_00056602	chr8	+	207	1	Intergenic	novelGene_3944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATTTCCTGGTCATCGG	NA	False	NA	NA	False	NA	NA	NA	67166316	67166523	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_67166300_67166500
ES_00056604	chr8	+	249	1	Intergenic	novelGene_3960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTTAAAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73031797	73032046	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_73031800_73032000
ES_00056605	chr8	+	288	1	Intergenic	novelGene_3964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTGGGAGACCCCTACC	NA	False	NA	NA	False	NA	NA	NA	78258355	78258643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_78258400_78258600
ES_00056606	chr8	+	206	1	Intergenic	novelGene_3969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTACTCTTAAATATATA	NA	False	NA	NA	False	NA	NA	NA	81590780	81590986	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_81590800_81591000
ES_00056607	chr8	+	255	1	Intergenic	novelGene_3971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTTTCTGATTTTGC	NA	False	NA	NA	False	NA	NA	NA	83897282	83897537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_83897300_83897500
ES_00056608	chr8	+	206	1	Intergenic	novelGene_3972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACATTTTTTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	84283999	84284205	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_84284000_84284200
ES_00056610	chr8	+	237	1	Intergenic	novelGene_3975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACCCACTGAGCCATCT	NA	False	NA	NA	False	NA	NA	NA	85374926	85375163	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_85374900_85375200
ES_00056612	chr8	+	205	1	Intergenic	novelGene_3978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTAATTTTTGTCTATT	916	False	NA	NA	False	NA	NA	NA	89013552	89013757	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_89013600_89013800
ES_00056614	chr8	+	292	1	Intergenic	novelGene_3989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCACTGTTAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-10	NA	95132712	95133004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_95132700_95133000
ES_00056615	chr8	+	213	1	Intergenic	novelGene_3990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTACAGAAATTAGTGCCA	NA	False	NA	NA	False	NA	NA	NA	95517763	95517976	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_95517800_95518000
ES_00056616	chr8	+	277	1	Intergenic	novelGene_3992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGACATCTTGTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	96306807	96307084	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_96306800_96307100
ES_00056617	chr8	+	491	1	Intergenic	novelGene_3994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGTGTGGTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	96325204	96325695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_96325200_96325700
ES_00056618	chr8	+	212	1	Intergenic	novelGene_3995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAGCCATCTCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	96643525	96643737	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_96643500_96643700
ES_00056619	chr8	+	1205	1	Intergenic	novelGene_3996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGACACATTTTAAAATTA	NA	False	NA	NA	False	AATAAA	-32	NA	101831519	101832724	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_101831500_101832700
ES_00056620	chr8	+	360	1	Intergenic	novelGene_3997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTTTGTCAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	103262354	103262714	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_103262400_103262700
ES_00056621	chr8	+	447	1	Intergenic	novelGene_4003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATGGCTGGGGTTTGC	2834	False	NA	NA	False	NA	NA	NA	107170943	107171390	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_107170900_107171400
ES_00056623	chr8	+	403	1	Intergenic	novelGene_4005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGACTGTTGGAGCAGGG	NA	False	NA	NA	False	NA	NA	NA	107763708	107764111	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_107763700_107764100
ES_00056628	chr8	+	465	1	Intergenic	novelGene_4011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111507513	111507978	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_111507500_111508000
ES_00056629	chr8	+	202	1	Intergenic	novelGene_4013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCCCCCCCCCACAAGG	NA	False	NA	NA	False	NA	NA	NA	112036557	112036759	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_112036600_112036800
ES_00056632	chr8	+	220	1	Intergenic	novelGene_4015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTCTTCTTGGATCTGTT	351	False	NA	NA	False	NA	NA	NA	117258453	117258673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_117258500_117258700
ES_00056633	chr8	+	205	1	Intergenic	novelGene_4016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAGAAAAGAA	8645	False	NA	NA	False	NA	NA	NA	117469851	117470056	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_117469900_117470100
ES_00056634	chr8	+	222	1	Intergenic	novelGene_4017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117608839	117609061	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_117608800_117609100
ES_00056635	chr8	+	215	1	Intergenic	novelGene_4018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTTTCCTAAACACATG	NA	False	NA	NA	False	TTTAAA	-5	NA	118032506	118032721	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_118032500_118032700
ES_00056636	chr8	+	244	1	Intergenic	novelGene_4019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATACAGAAGAAAATAGGG	NA	False	NA	NA	False	NA	NA	NA	120309910	120310154	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_120309900_120310200
ES_00056638	chr8	+	203	1	Intergenic	novelGene_4020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	999	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATATATACTTTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	121047626	121047829	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_121047600_121047800
ES_00056639	chr8	+	223	1	Intergenic	novelGene_4021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTTTCCAGCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	121389450	121389673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_121389400_121389700
ES_00056641	chr8	+	210	1	Intergenic	novelGene_4023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGGTGCCCCACCAA	5944	False	NA	NA	False	NA	NA	NA	123316606	123316816	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_123316600_123316800
ES_00056643	chr8	+	229	1	Intergenic	novelGene_4025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	486	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTACATTTATTTACTT	7379	False	NA	NA	False	NA	NA	NA	124801184	124801413	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_124801200_124801400
ES_00056645	chr8	+	204	1	Intergenic	novelGene_4026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCCTGCAGTAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	126388616	126388820	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_126388600_126388800
ES_00056646	chr8	+	279	1	Intergenic	novelGene_4028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTACACTTCAGCCAGA	3671	False	NA	NA	False	AAGAAA	-26	NA	127072776	127073055	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_127072800_127073100
ES_00056648	chr8	+	3858	12	FSM	ENSMUSG00000004568.14	ENSMUST00000131773.8	3843	12	-15	0	-15	0	multi-exon	FALSE	canonical	3	218	junction_1	24.575738893241	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAATAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	3442990	3500640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382
ES_00056649	chr8	+	5295	20	NNC	ENSMUSG00000004568.14	novel	5271	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_15	61.0774450483058	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	24	True	AATAAA	-14	NA	3443037	3506601	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501606_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
ES_00056653	chr8	+	2889	1	FSM	ENSMUSG00000004567.17	ENSMUST00000208739.2	2889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAGAGAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	3550494	3553383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3550500_3553400
ES_00056654	chr8	+	2110	2	FSM	ENSMUSG00000004567.17	ENSMUST00000161705.3	2110	2	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGTGGTCTAATTTGTAA	NA	False	NA	12	True	AATAAA	-13	NA	3563022	3565232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3564914_3565013
ES_00056655	chr8	+	4425	34	NIC	ENSMUSG00000004565.16	novel	4496	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	64.3462568557788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3565383	3594266	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_3565557_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ES_00056656	chr8	+	1551	11	NNC	ENSMUSG00000004565.16	novel	672	6	NA	NA	-250	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	97.8756864599171	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGTGCTGTCTTTG	NA	False	NA	14	True	AATAAA	-18	NA	3586304	3594264	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3586339_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ES_00056663	chr8	+	777	9	FSM	ENSMUSG00000004626.15	ENSMUST00000159888.8	776	9	-1	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	118.768090727266	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTCATAATGGACCGGGC	4584	False	NA	NA	False	AAAACA	-10	NA	3681151	3685639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615
ES_00056665	chr8	+	215	1	Genic_Genomic	ENSMUSG00000004626.15	novel	NA	NA	NA	NA	-193	-276	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTTTTCTTGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	3690513	3690728	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_+_3690500_3690700
ES_00056669	chr8	+	6332	14	NIC	ENSMUSG00000109061.2	novel	2879	16	NA	NA	-36	86	intron_retention	FALSE	canonical	3	6	junction_11	125.483773910386	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGAGATTTGTGGCTTGG	NA	False	NA	NA	False	NA	NA	NA	4288828	4301509	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4299342_4299425_4299747_4300266_4300382_4300466
ES_00056671	chr8	+	2546	1	FSM	ENSMUSG00000089736.3	ENSMUST00000209051.2	2546	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGTGGAGTCAATATG	NA	False	NA	NA	False	AATAAA	-16	NA	4298877	4301423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4298900_4301400
ES_00056673	chr8	+	383	5	FSM	ENSMUSG00000023235.15	ENSMUST00000136191.8	395	5	12	0	7	0	multi-exon	FALSE	canonical	2	3	junction_2	6.96419413859206	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCGCCAGAAAGTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	4375247	4404097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4375289_4377756_4377851_4399771_4399895_4403882_4404001_4404090
ES_00056674	chr8	+	1057	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	-14	15	-14	7	multi-exon	FALSE	canonical	2	8	junction_1	5.67097875150313	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAATGACTGACAGTGAT	7899	False	NA	NA	False	AATAAA	-20	NA	4399573	4410005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
ES_00056675	chr8	+	1278	6	FSM	ENSMUSG00000008206.17	ENSMUST00000176932.8	3674	6	0	2396	0	-371	multi-exon	FALSE	canonical	3	47	junction_3	5.01996015920445	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGTAGAACCCTCCACA	NA	False	NA	NA	False	NA	NA	NA	4543481	4570162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462
ES_00056677	chr8	+	675	1	FSM	ENSMUSG00000109055.2	ENSMUST00000207279.2	606	1	-73	4	-73	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	886	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTTGGTTCTAGCACAG	NA	False	NA	NA	False	NA	NA	NA	4763133	4763808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4763100_4763800
ES_00056678	chr8	+	953	1	FSM	ENSMUSG00000109117.2	ENSMUST00000208349.2	1131	1	66	112	66	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATATGGGGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	8761549	8762502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_8761500_8762500
ES_00056679	chr8	+	4926	19	FSM	ENSMUSG00000031511.17	ENSMUST00000110909.9	4926	19	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_18	27.7398073818159	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGGCTTTTAATATTT	NA	False	NA	NA	False	AATAAA	-15	NA	11778104	11877149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11778417_11808430_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11874504
ES_00056682	chr8	+	4964	29	ISM	ENSMUSG00000031442.22	ENSMUST00000110879.9	3664	30	32	-1193	32	1	intron_retention	FALSE	canonical	2	4	junction_1	7.42548012602827	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAGCATTTCTGGTTA	NA	False	NA	12	True	AATAAA	-19	NA	12966006	13070502	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_12966055_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ES_00056683	chr8	+	2370	9	FSM	ENSMUSG00000031442.22	ENSMUST00000123811.9	2390	9	0	20	0	2	multi-exon	FALSE	canonical	2	5	junction_8	10.9822299648113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATTTCTGGTTATGTGT	489	False	NA	17	True	AATAAA	-24	NA	13061493	13070507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695_13068800_13068938
ES_00056685	chr8	+	2723	5	FSM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	9.44391338376205	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13338189	13347617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979
ES_00056686	chr8	+	2296	11	NIC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	0	-5996	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	17.9899972206779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTTTGGAGTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	13338208	13364910	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144_13360341_13363805_13363957_13364557
ES_00056687	chr8	+	395	1	FSM	ENSMUSG00000038497.8	ENSMUST00000211402.2	1802	1	520	887	491	-887	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTCTTTGTGGATTTA	NA	False	NA	NA	False	AAAAAG	-34	NA	13338728	13339123	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13338700_13339100
ES_00056688	chr8	+	2839	13	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-107	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_4	419.925282705811	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	1996	False	NA	88	True	AATAAA	-18	NA	13388643	13428442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415203_13419458_13419581_13420168_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00056690	chr8	+	2651	13	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_5	377.101472860202	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	2173	False	NA	87	True	AATAAA	-17	NA	13388820	13428441	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420171_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00056692	chr8	+	2313	10	NIC	ENSMUSG00000038482.12	novel	1700	11	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	2	14	junction_3	319.788741994106	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	3030	False	NA	87	True	AATAAA	-17	NA	13389677	13428441	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_13389740_13407042_13407110_13415088_13415196_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00056693	chr8	+	1131	2	FSM	ENSMUSG00000038398.9	ENSMUST00000211643.2	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGGAGCCTAGACAAGT	NA	False	NA	NA	False	AATACA	-12	NA	13835644	13837037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13835885_13836146
ES_00056694	chr8	+	495	1	FSM	ENSMUSG00000085371.2	ENSMUST00000128343.2	607	1	-110	222	-110	-222	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACAAGCAGCCCTATGAG	NA	False	NA	NA	False	AAGAAA	-32	NA	14186199	14186694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_14186200_14186700
ES_00056695	chr8	+	6319	4	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-171	214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	90.164048021124	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGTTGTGACTTCTC	NA	False	NA	NA	False	AAGAAA	-42	NA	14938832	14951934	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_14939119_14944571_14945231_14946530_14949493_14949522
ES_00056696	chr8	+	1876	1	FSM	ENSMUSG00000083218.3	ENSMUST00000118143.3	3130	1	635	619	635	-619	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCACCACAAGCGGAGGC	NA	False	NA	NA	False	NA	NA	NA	19586104	19587980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_19586100_19588000
ES_00056697	chr8	+	5084	4	ISM	ENSMUSG00000087153.9	ENSMUST00000155660.9	862	5	-179	-258	-179	258	intron_retention	FALSE	canonical	3	15	junction_1	223.189505926142	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTTTCATCAGTGTTG	2718	False	NA	NA	False	NA	NA	NA	19732285	19748010	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_19732505_19737619_19737921_19741536_19741657_19743566
ES_00056698	chr8	+	4198	5	Fusion	ENSMUSG00000071796.14_ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	405216	multi-exon	TRUE	non_canonical	0	0	junction_3	207.086938265068	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTGTTTTCCTTTCTCT	2718	False	NA	NA	False	NA	NA	NA	19732285	20583883	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19732672_19741536_19741657_19743566_19745501_20170999_20172724_20583849
ES_00056699	chr8	+	862	5	FSM	ENSMUSG00000087153.9	ENSMUST00000155660.9	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	210.984004133015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTTGTTGTTAGCCTTG	2897	False	NA	NA	False	NA	NA	NA	19732464	19747752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_19732505_19737619_19737921_19741536_19741657_19743566_19743735_19747519
ES_00056700	chr8	+	4525	4	Fusion	ENSMUSG00000071793.13_ENSMUSG00000087153.9	novel	862	5	NA	NA	8954	214	multi-exon	TRUE	non_canonical	0	0	junction_2	243.244732728172	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCTTCCTCACTCTCAG	NA	False	NA	NA	False	NA	NA	NA	19741418	20046102	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19741657_19743566_19745456_20043674_20045923_20045952
ES_00056701	chr8	+	5578	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-420	214	intron_retention	FALSE	non_canonical	0	0	junction_5	553.985703786659	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCTTCCTCACTCTCAG	NA	False	NA	NA	False	NA	NA	NA	19834341	20046102	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20045923_20045952
ES_00056702	chr8	+	5274	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-116	351	intron_retention	FALSE	canonical	3	906	junction_2	214.058403245469	151	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGGAAGGGGATGCCTT	NA	False	NA	NA	False	AATAAA	-31	NA	19834645	20046239	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ES_00056703	chr8	+	5309	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	0	335	intron_retention	FALSE	canonical	3	606	junction_2	335.627770007191	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	19834761	20046223	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ES_00056704	chr8	+	5406	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	21	9275	21	335	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	20016486	20046223	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ES_00056706	chr8	+	5227	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	33	335	intron_retention	FALSE	canonical	3	882	junction_1	265.429369136123	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	20016498	20046223	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ES_00056711	chr8	+	3770	4	Fusion	ENSMUSG00000095403.9_ENSMUSG00000071796.14	novel	4659	5	NA	NA	11696	324	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGGGCAGGAAGGGGA	NA	False	NA	NA	False	AATAAA	-25	NA	20169709	21123111	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20170978_20582098_20582117_20725081_20725765_21121310
ES_00056712	chr8	+	3766	4	Fusion	ENSMUSG00000095403.9_ENSMUSG00000071796.14	novel	4659	5	NA	NA	11696	324	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGGGCAGGAAGGGGA	NA	False	NA	NA	False	AATAAA	-25	NA	20169709	21123111	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20170224_20581339_20581502_20724475_20725765_21121310
ES_00056713	chr8	+	5145	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000095403.9	novel	955	5	NA	NA	0	324	intron_retention	FALSE	canonical	3	161	junction_3	170.265050729737	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGGGCAGGAAGGGGA	NA	False	NA	NA	False	AATAAA	-25	NA	20697984	21123111	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_20698090_21107448_21107655_21112754_21113054_21116684_21116805_21118696
ES_00056714	chr8	+	242	2	Antisense	novelGene_ENSMUSG00000110574.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAAGGTTTTTATAGTG	NA	False	NA	NA	False	NA	NA	NA	21079546	21162219	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_21079573_21162003
ES_00056715	chr8	+	241	2	Antisense	novelGene_ENSMUSG00000110574.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAAGGTTTTTATAGTG	NA	False	NA	NA	False	NA	NA	NA	21079546	21162219	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_21079572_21162003
ES_00056716	chr8	+	5226	5	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17372	306	intron_retention	FALSE	canonical	3	44	junction_1	210.10771047251	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCGTGTGGGCATTCAAA	5840	False	NA	NA	False	AATAAA	-7	NA	21090240	21123093	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21116684_21116805_21118696
ES_00056717	chr8	+	5775	2	ISM	ENSMUSG00000095403.9	ENSMUST00000178995.3	955	5	7832	-324	7832	324	intron_retention	FALSE	canonical	3	607	junction_1	0	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGGGCAGGAAGGGGA	NA	False	NA	NA	False	AATAAA	-25	NA	21115444	21123111	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_21116805_21118696
ES_00056718	chr8	+	362	2	FSM	ENSMUSG00000074444.5	ENSMUST00000098898.5	398	2	34	2	34	-2	multi-exon	FALSE	canonical	3	16	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCTGTGTGTTCACATT	6554	False	NA	NA	False	AATAAA	-14	NA	21624691	21625612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_21624851_21625409
ES_00056719	chr8	+	4850	4	FSM	ENSMUSG00000063362.14	ENSMUST00000110737.3	4833	4	-21	4	-20	-4	multi-exon	FALSE	canonical	0	0	junction_2	31.1234102672999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACCTGCTGGCTCCCTTT	NA	False	NA	1	True	NA	NA	NA	22550716	22561639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22550787_22551901_22552133_22555141_22555948_22557896
ES_00056720	chr8	+	5006	3	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	1050	-4	intron_retention	FALSE	canonical	3	51	junction_1	7	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACCTGCTGGCTCCCTTT	NA	False	NA	1	True	NA	NA	NA	22551805	22561639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_22552137_22555015_22555948_22557896
ES_00056721	chr8	+	2647	5	FSM	ENSMUSG00000031533.5	ENSMUST00000211083.2	2625	5	-22	0	15	0	multi-exon	FALSE	canonical	3	683	junction_2	50.8551865594848	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTGTCGTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	22901391	22916212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362
ES_00056722	chr8	+	4046	18	FSM	ENSMUSG00000031565.19	ENSMUST00000117179.9	4046	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	66.5202833494101	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTTTATCCTGGGCGT	NA	False	NA	11	True	AATAAA	-14	NA	26008810	26064797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ES_00056730	chr8	+	4949	12	NIC	ENSMUSG00000031483.9	novel	940	10	NA	NA	48	2	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	86.8177534496809	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTTTTCATTGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	27513976	27530358	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_27514194_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ES_00056731	chr8	+	2531	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	86.0112637972493	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532623	27546160	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544057_27545087
ES_00056732	chr8	+	734	2	FSM	ENSMUSG00000031485.16	ENSMUST00000211756.2	734	2	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTCATCAGTAGCAACAGT	NA	False	NA	NA	False	NA	NA	NA	27540801	27542369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_27541430_27542263
ES_00056733	chr8	+	2056	8	ISM	ENSMUSG00000031486.16	ENSMUST00000178514.8	5129	16	-77	10409	-77	-8597	5prime_fragment	FALSE	canonical	3	17	junction_4	4.03049599419025	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTGTGGCAATTAGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	27575533	27603054	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370
ES_00056734	chr8	+	5760	19	FSM	ENSMUSG00000031486.16	ENSMUST00000033876.14	5760	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	8.55699843532896	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCGCCCACCCATGGTC	NA	False	NA	NA	False	ATTAAA	-26	NA	27575625	27613464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370_27602536_27603313_27603513_27604107_27604258_27604372_27604535_27605264_27605490_27605682_27605903_27607343_27607544_27608751_27608880_27609161_27609286_27609733_27609880_27610474_27610565_27610793
ES_00056736	chr8	+	2311	4	FSM	ENSMUSG00000046152.17	ENSMUST00000110527.9	2327	4	16	0	12	0	multi-exon	FALSE	canonical	0	0	junction_3	19.3964487013015	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTCAAGAAATGTATT	NA	False	NA	2	True	AATAAA	-15	NA	31677386	31751503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31749927
ES_00056737	chr8	+	4038	8	FSM	ENSMUSG00000009628.15	ENSMUST00000124496.8	4014	8	-24	0	-24	0	multi-exon	TRUE	canonical	2	5	junction_1	4.09579176766613	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAAGGACATGCA	NA	False	NA	NA	False	NA	NA	NA	34007327	34063586	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_34007456_34017251_34017328_34029640_34029777_34036214_34036381_34047229_34047468_34053003_34053151_34055070_34055234_34060602
ES_00056738	chr8	+	1541	2	ISM	ENSMUSG00000071113.5	ENSMUST00000095345.5	1836	3	5153	-1	5153	1	3prime_fragment	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGCCGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	34587336	34592337	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_34587449_34590908
ES_00056740	chr8	+	6001	3	FSM	ENSMUSG00000070056.7	ENSMUST00000037666.6	6408	3	213	194	213	-194	multi-exon	FALSE	canonical	1	3	junction_2	1	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCTGGACTCTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	36055164	36146409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_36058513_36131821_36131949_36143883
ES_00056741	chr8	+	1017	5	FSM	ENSMUSG00000118664.1	ENSMUST00000239511.1	2667	5	0	1650	0	-1650	multi-exon	FALSE	canonical	3	137	junction_1	14.5322916293336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGGTATGATTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	39473063	39538826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529
ES_00056745	chr8	+	9393	37	NIC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	0	1743	intron_retention	FALSE	canonical	3	32	junction_10	43.1137867869561	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAATTGTATTTTTATT	NA	False	NA	26	True	AATAAA	-18	NA	41692788	41787124	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
ES_00056746	chr8	+	8189	37	NIC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	0	1744	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	43.9489304494924	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAATTGTATTTTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	41692814	41787125	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ES_00056747	chr8	+	6556	38	NNC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_35	48.7301569437585	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	8	True	AATAAA	-20	NA	41692847	41785381	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782090_41783669_41783763_41783842_41783958_41785019
ES_00056748	chr8	+	1165	5	Intergenic	novelGene_3926	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_4	30.1775993080961	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATTCTCCTTTACTTTTTC	NA	False	NA	6	True	AATAAA	-6	NA	43806961	43824703	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_43807132_43809132_43809201_43811094_43811168_43818030_43818205_43824023
ES_00056751	chr8	+	4658	5	ISM	ENSMUSG00000031631.16	ENSMUST00000110376.8	2043	6	-13	0	7	0	intron_retention	FALSE	canonical	2	6	junction_1	21.868927728629	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTTGATTCTGTTTT	NA	False	NA	14	True	AATAAA	-15	NA	46616758	46648623	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_46616901_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ES_00056754	chr8	+	3925	21	FSM	ENSMUSG00000018796.14	ENSMUST00000110372.9	3429	21	-24	-472	-24	2	multi-exon	FALSE	canonical	3	16	junction_1	90.7041344151412	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTTTCAAGTGCCTTGT	9483	False	NA	19	True	AATAAA	-28	NA	46943978	46989090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_46944199_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
ES_00056758	chr8	+	2142	1	FSM	ENSMUSG00000031568.17	ENSMUST00000183107.2	2498	1	234	122	234	8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGTTTTGTTTCAAATC	NA	False	NA	15	True	AATAAA	-25	NA	48003726	48005868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48003700_48005900
ES_00056759	chr8	+	442	1	FSM	ENSMUSG00000097706.2	ENSMUST00000180928.2	1756	1	256	1058	256	-1058	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCCGCCGCCGCTGCCGCC	NA	False	NA	NA	False	NA	NA	NA	48166556	48166998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48166600_48167000
ES_00056760	chr8	+	201	2	Antisense	novelGene_ENSMUSG00000031563.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAAAAGCCCGTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	48426213	48429637	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_48426268_48429490
ES_00056761	chr8	+	789	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	-3	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGACATATTGTGCAT	NA	False	NA	NA	False	AATATA	-19	NA	48563196	48590726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
ES_00056762	chr8	+	1126	5	FSM	ENSMUSG00000031562.17	ENSMUST00000098773.6	1126	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	189.227871889952	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563223	48591626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591213
ES_00056763	chr8	+	213	2	Intergenic	novelGene_3936	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	67	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTGAAAAATAAACAAGT	NA	False	NA	NA	False	NA	NA	NA	56366543	56371335	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_56366595_56371173
ES_00056764	chr8	+	1063	6	Fusion	ENSMUSG00000096917.3_ENSMUSG00000054717.8	novel	2628	5	NA	NA	-27	0	multi-exon	FALSE	canonical	1	1	junction_3	2973.77286287975	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTGATCTGAGAACTA	NA	False	NA	NA	False	AAAAAG	-26	NA	57941060	57966241	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_57941228_57943373_57943502_57959561_57959836_57964865_57965040_57965608_57965783_57966095
ES_00056765	chr8	+	1773	8	Fusion	ENSMUSG00000096917.3_ENSMUSG00000054717.8	novel	2628	5	NA	NA	1545	1274	multi-exon	FALSE	canonical	1	1	junction_3	3169.34782449845	689	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAATTTGCATTGTGTTT	NA	False	NA	-2	True	AATAAA	-9	NA	57942632	57967517	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_57942817_57943373_57943502_57959561_57959836_57964865_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ES_00056766	chr8	+	302	2	FSM	ENSMUSG00000096917.3	ENSMUST00000210752.2	298	2	-4	0	-4	0	multi-exon	FALSE	canonical	3	9	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57958844	57959765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57958943_57959561
ES_00056767	chr8	+	348	3	NNC	ENSMUSG00000054717.8	novel	414	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1278	junction_1	2982	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTGATCTGAGAACTA	NA	False	NA	NA	False	AAAAAG	-26	NA	57965007	57966241	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_57965040_57965612_57965783_57966095
ES_00056768	chr8	+	414	3	FSM	ENSMUSG00000054717.8	ENSMUST00000210871.2	414	3	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	3614	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGATCTGAGAACTAAC	NA	False	NA	NA	False	AAAAAG	-28	NA	57965007	57966243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57965040_57965548_57965783_57966095
ES_00056769	chr8	+	6267	3	FSM	ENSMUSG00000031647.11	ENSMUST00000160719.8	6335	3	0	68	0	-68	multi-exon	FALSE	canonical	0	0	junction_2	1.5	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAACCATGGCTTGTGA	NA	False	NA	NA	False	TATAAA	-38	NA	61085893	61129695	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61086093_61109493_61109924_61124057
ES_00056770	chr8	+	3428	29	FSM	ENSMUSG00000031644.20	ENSMUST00000155664.8	3562	29	0	134	0	-134	multi-exon	FALSE	canonical	3	4	junction_1	14.9722106529642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAATGACTATCCTATTT	NA	False	NA	NA	False	NA	NA	NA	61446272	61560251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61446391_61446675_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828
ES_00056771	chr8	+	334	1	FSM	ENSMUSG00000109708.3	ENSMUST00000211661.3	3894	1	1141	2419	1141	-2419	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCGGGAAACAAGAGGTCAA	NA	False	NA	NA	False	NA	NA	NA	61504223	61504557	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61504200_61504600
ES_00056772	chr8	+	584	3	FSM	ENSMUSG00000031641.15	ENSMUST00000156535.2	718	3	0	134	0	-134	multi-exon	FALSE	canonical	3	175	junction_1	5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTATTAAAAATGACAGCA	2587	False	NA	NA	False	GGGGCT	-44	NA	61940788	61944805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61941025_61942973_61943095_61944578
ES_00056775	chr8	+	329	2	Antisense	novelGene_ENSMUSG00000031605.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	305	junction_1	0	174	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65179667	65208661	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_65179870_65208534
ES_00056776	chr8	+	1656	1	FSM	ENSMUSG00000025588.5	ENSMUST00000026677.4	1347	1	210	-519	210	519	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATCAAAGGCTTCTTGG	NA	False	NA	NA	False	ATTAAA	-35	NA	67943619	67945275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_67943600_67945300
ES_00056777	chr8	+	2428	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	-10	150	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_9	163.936296697833	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAACTTATTTTTA	NA	False	NA	20	True	AATAAA	-22	NA	69246597	69280303	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263227_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ES_00056778	chr8	+	751	5	FSM	ENSMUSG00000006273.15	ENSMUST00000129797.2	766	5	15	0	15	0	multi-exon	FALSE	canonical	3	1306	junction_3	37.485830656396	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAATGACCAGAAAG	NA	False	NA	NA	False	AATGAA	-12	NA	69555794	69560992	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934
ES_00056779	chr8	+	1592	2	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	5536	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	NA	False	NA	27	True	AATAAA	-18	NA	69667235	69683188	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_69667411_69681771
ES_00056780	chr8	+	8829	1	Genic_Genomic	ENSMUSG00000079038.4	novel	NA	NA	NA	NA	7608	3005	mono-exon	FALSE	NA	NA	NA	NA	NA	293	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGGTCTTTGTGGTCTTT	NA	False	NA	8	True	NA	NA	NA	69761035	69769864	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_+_69761000_69769900
ES_00056781	chr8	+	3811	26	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	34	0	combination_of_known_junctions	TRUE	canonical	3	87	junction_13	62.842609748482	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9198	False	NA	NA	False	AATAAA	-23	NA	70243846	70260399	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252481_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ES_00056782	chr8	+	1512	2	FSM	ENSMUSG00000031861.17	ENSMUST00000238452.2	1350	2	-162	0	-7	0	multi-exon	FALSE	canonical	3	18	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCCCAGCCTTTCTTCA	327	False	NA	NA	False	NA	NA	NA	70275071	70277425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70275362_70276203
ES_00056783	chr8	+	547	2	FSM	ENSMUSG00000031860.18	ENSMUST00000151975.2	547	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATCCCTAGGACCCACAT	2206	False	NA	NA	False	NA	NA	NA	70285273	70312048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70285502_70311729
ES_00056785	chr8	+	3553	5	FSM	ENSMUSG00000007594.11	ENSMUST00000007738.11	3648	5	91	4	51	-4	multi-exon	FALSE	canonical	1	2	junction_2	1.08972473588517	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGCCTGGCCAATTTT	1180	False	NA	-1	True	NA	NA	NA	70536197	70543508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70536214_70537069_70537191_70537431_70537795_70539457_70539782_70540779
ES_00056787	chr8	+	1520	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5868	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	79.2668554630496	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	590	False	NA	4	True	NA	NA	NA	70611298	70620137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ES_00056788	chr8	+	2083	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	-3	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5866	False	NA	7	True	AATAAA	-17	NA	70625054	70635500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ES_00056789	chr8	+	402	2	FSM	ENSMUSG00000002342.18	ENSMUST00000126268.2	402	2	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACATCGCTGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	70629494	70630211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70629576_70629890
ES_00056791	chr8	+	1732	9	ISM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	6	2078	6	545	5prime_fragment	FALSE	canonical	3	150	junction_8	37.4814537471534	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCTATTAAGCATTCTT	NA	False	NA	8	True	ATTAAA	-17	NA	70735654	70744933	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166
ES_00056792	chr8	+	2753	8	FSM	ENSMUSG00000055681.15	ENSMUST00000134822.8	2753	8	0	0	0	0	multi-exon	FALSE	canonical	3	1283	junction_7	34.9203174588744	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATACCCACCAGGC	703	False	NA	29	True	AATAAA	-18	NA	70755418	70765643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70755583_70757283_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ES_00056794	chr8	+	637	5	FSM	ENSMUSG00000070002.8	ENSMUST00000210155.2	457	5	-180	0	-180	0	multi-exon	FALSE	canonical	2	6	junction_1	56.0685963797918	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCCATCAGAAAGAGCAGT	NA	False	NA	NA	False	NA	NA	NA	70991926	71034291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70992143_71025512_71025561_71031486_71031609_71031742_71031907_71034204
ES_00056796	chr8	+	636	4	FSM	ENSMUSG00000031848.16	ENSMUST00000210987.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1451.48498671763	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAGCCAGCTGTTCTTC	NA	False	NA	14	True	AATAAA	-14	NA	71126081	71131396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71126108_71129204_71129247_71130603_71130785_71131009
ES_00056797	chr8	+	589	1	FSM	ENSMUSG00000020887.4	ENSMUST00000050921.3	2302	1	-27	1740	-27	-1740	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCATTCTGAGGTGGCTC	5048	False	NA	NA	False	NA	NA	NA	71315743	71316332	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71315700_71316300
ES_00056798	chr8	+	7076	39	NIC	ENSMUSG00000004677.18	novel	7082	40	NA	NA	-7	0	intron_retention	FALSE	canonical	0	0	junction_1	41.552623245891	1944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGTGGTCTTGCTGCT	NA	False	NA	12	True	AATAAA	-15	NA	71725391	71813353	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_71725474_71742885_71743781_71767768_71767864_71774425_71774489_71775577_71775678_71775908_71776010_71776507_71776638_71778496_71778587_71780523_71780641_71781189_71781325_71783351_71783474_71785897_71786040_71786270_71786476_71786956_71787039_71789519_71789610_71793403_71793444_71795405_71795529_71796256_71796338_71796733_71796845_71798673_71798797_71800257_71800575_71800974_71801839_71802778_71802834_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807160_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811606_71811738_71811968_71812097_71812307
ES_00056799	chr8	+	5208	29	NIC	ENSMUSG00000004677.18	novel	7082	40	NA	NA	-273	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_27	35.403847219747	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGTGGTCTTGCTGCT	5591	False	NA	12	True	AATAAA	-15	NA	71786187	71813353	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_71786476_71786956_71787039_71789519_71789610_71793403_71793444_71795405_71795529_71796256_71796338_71796733_71796845_71798673_71798797_71800257_71800575_71800974_71801546_71801578_71801839_71802778_71802834_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807160_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811259_71811308_71811606_71811738_71811968_71812097_71812201
ES_00056801	chr8	+	1025	9	NNC	ENSMUSG00000002395.15	novel	973	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	325.028051674005	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTGTTTATCCGAATC	NA	False	NA	-39	True	NA	NA	NA	71819585	71822315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_71819723_71819878_71820014_71820174_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ES_00056802	chr8	+	960	7	NNC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	424.240759736994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71819887	71822373	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821493_71821522_71821772_71821948_71822170
ES_00056804	chr8	+	707	2	FSM	ENSMUSG00000031820.10	ENSMUST00000212383.2	707	2	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGGAGAAGGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	71854865	71855672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71855520_71855619
ES_00056805	chr8	+	1893	8	NNC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	0	0	intron_retention	TRUE	canonical	2	15	junction_4	32.2964583892692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858665	71862548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71860262_71860394_71860514_71860687_71861308_71861469_71861565
ES_00056807	chr8	+	450	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147843.8	410	4	-40	0	-40	0	multi-exon	FALSE	canonical	2	10	junction_2	367.768949205884	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACTGTAGGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	71921802	71924890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71921970_71922186_71922337_71924680_71924762_71924838
ES_00056808	chr8	+	886	4	FSM	ENSMUSG00000074247.11	ENSMUST00000098645.11	874	4	-12	0	0	0	multi-exon	FALSE	canonical	2	515	junction_3	146.765875537273	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCCCGTGCCAGGGCA	NA	False	NA	NA	False	NA	NA	NA	71921842	71927618	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71921970_71924680_71924891_71926418_71926481_71927131
ES_00056809	chr8	+	3081	9	FSM	ENSMUSG00000007610.16	ENSMUST00000127741.2	2392	9	-632	-57	16	57	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGCGTGCGCCACCAC	NA	False	NA	NA	False	NA	NA	NA	71940762	71946101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943298_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ES_00056811	chr8	+	219	1	FSM	ENSMUSG00000110619.2	ENSMUST00000212909.2	712	1	272	221	272	-221	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAACCCCATCCGCCTGG	NA	False	NA	NA	False	NA	NA	NA	71976489	71976708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71976500_71976700
ES_00056812	chr8	+	1525	2	FSM	ENSMUSG00000031813.9	ENSMUST00000212341.2	1519	2	-6	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCTGGAGCATTAGC	NA	False	NA	NA	False	NA	NA	NA	71995565	71997165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71995702_71995776
ES_00056813	chr8	+	2692	13	FSM	ENSMUSG00000031808.8	ENSMUST00000212889.2	2730	13	38	0	-7	0	multi-exon	FALSE	canonical	1	1	junction_1	50.6959208308606	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72021563	72039349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72021668_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
ES_00056815	chr8	+	1460	6	ISM	ENSMUSG00000031805.18	ENSMUST00000110013.10	4009	24	-33	8434	-33	-184	5prime_fragment	FALSE	canonical	3	211	junction_4	16.5939748101532	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCCCTAACCTCGTCCC	NA	False	NA	NA	False	NA	NA	NA	72128906	72132766	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202
ES_00056817	chr8	+	4049	22	FSM	ENSMUSG00000031805.18	ENSMUST00000130624.2	4049	22	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_21	32.7480590898096	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTGGACCCAGCGCTAGA	NA	False	NA	NA	False	NA	NA	NA	72130978	72142868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72133202_72133283_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683_72140807_72142815
ES_00056818	chr8	+	3008	18	NNC	ENSMUSG00000031805.18	novel	4009	24	NA	NA	1948	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_5	52.5156098065747	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAAAAGATGGTTTGTG	NA	False	NA	-4	True	AATGAA	-4	NA	72132926	72141200	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134828_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
ES_00056819	chr8	+	7616	4	FSM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	0	-430	0	430	multi-exon	FALSE	canonical	3	13	junction_3	3.85861230093008	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAAAAGCAGCATGAAAG	NA	False	NA	NA	False	TTTAAA	-12	NA	72635862	72650001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72636053_72641107_72641235_72641444_72641506_72642763
ES_00056820	chr8	+	439	1	FSM	ENSMUSG00000110546.2	ENSMUST00000211916.2	411	1	-46	18	-46	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGGAGAACGTGCTTAAGA	NA	False	NA	NA	False	NA	NA	NA	72789042	72789481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72789000_72789500
ES_00056823	chr8	+	1548	4	NNC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	29	29384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1400.60375870154	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTCAGTGGCCGGCCCC	NA	False	NA	NA	False	NA	NA	NA	73072905	73104884	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_73072994_73073269_73074087_73074587_73075195_73104848
ES_00056824	chr8	+	1521	3	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	-24	-8487	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	25	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAAGGTGATGAATATT	NA	False	NA	NA	False	NA	NA	NA	73197751	73204008	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_73197834_73198593_73199315_73203290
ES_00056825	chr8	+	834	1	FSM	ENSMUSG00000110446.2	ENSMUST00000212240.2	1063	1	252	-23	252	23	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCACCTCCCTACCCACC	NA	False	NA	NA	False	NA	NA	NA	73269453	73270287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_73269500_73270300
ES_00056826	chr8	+	1923	2	Intergenic	novelGene_3963	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTTTCTTTGTGTAGTTC	NA	False	NA	NA	False	NA	NA	NA	73302398	73304921	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_73303176_73303775
ES_00056830	chr8	+	1202	4	FSM	ENSMUSG00000037134.18	ENSMUST00000142824.2	3888	4	-15	2701	-5	-2701	multi-exon	FALSE	canonical	3	131	junction_3	9.80929264637477	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTTTATAACATGTTTT	NA	False	NA	NA	False	NA	NA	NA	78276020	78287906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435
ES_00056834	chr8	+	4511	14	FSM	ENSMUSG00000071064.16	ENSMUST00000238669.2	4511	14	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_13	3.038218101251	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTGGTACATTGGGTTT	5196	False	NA	NA	False	NA	NA	NA	79755215	79917485	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_79755359_79786878_79787920_79796999_79797173_79802686_79803168_79818461_79818696_79844803_79845044_79847111_79847170_79863188_79863293_79902461_79902600_79905536_79905709_79906673_79906841_79912226_79912419_79912804_79912983_79916295
ES_00056836	chr8	+	980	1	FSM	ENSMUSG00000109584.2	ENSMUST00000210546.2	980	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCCAGTGTCCTCGC	NA	False	NA	NA	False	NA	NA	NA	81497319	81498299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_81497300_81498300
ES_00056837	chr8	+	1927	11	FSM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	947.235852362019	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	25	True	AATAAA	-11	NA	84441896	84449903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ES_00056839	chr8	+	6304	24	NNC	ENSMUSG00000013033.17	novel	5643	24	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	18.6006687279424	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGACAAAAAAAAAGTAAG	3067	False	NA	NA	False	NA	NA	NA	84626728	84666616	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_84627554_84642035_84642198_84645448_84645663_84649627_84649738_84654926_84655012_84656092_84656894_84657590_84657906_84658241_84658346_84658596_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ES_00056842	chr8	+	723	2	FSM	ENSMUSG00000046408.16	ENSMUST00000140120.3	848	2	52	73	52	-73	multi-exon	FALSE	canonical	2	6	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGGCAGGAAACGGG	5948	False	NA	NA	False	NA	NA	NA	84729009	84729845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84729632_84729744
ES_00056843	chr8	+	3807	20	NIC	ENSMUSG00000031706.8	novel	4172	21	NA	NA	21	-5	combination_of_known_splicesites	FALSE	canonical	1	8	junction_1	11.873058960768	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTCTACTGATGACGA	NA	False	NA	16	True	AATAAA	-12	NA	84793485	84823616	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_84793678_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ES_00056844	chr8	+	2393	8	FSM	ENSMUSG00000008129.15	ENSMUST00000093375.5	2167	8	-222	-4	5	3	multi-exon	TRUE	canonical	2	6	junction_4	5.92125193601792	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATCTGTAGCTGTGCTG	1888	False	NA	8	True	AATAAA	-18	NA	84874658	84899222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84893209_84894320_84896983_84897082_84898446_84898540_84898789
ES_00056845	chr8	+	544	1	FSM	ENSMUSG00000097296.2	ENSMUST00000180630.2	690	1	96	50	96	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTATTGAATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	84935644	84936188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84935600_84936200
ES_00056846	chr8	+	8169	48	NNC	ENSMUSG00000034656.19	novel	8370	49	NA	NA	18124	31	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	11.0613745229835	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACCAAGATGCCTTGCA	78	False	NA	39	True	NA	NA	NA	85083391	85366906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85083755_85142272_85142573_85188118_85188225_85189314_85189455_85241591_85241684_85245239_85245393_85249644_85249839_85260022_85260127_85262689_85262806_85263030_85263088_85264067_85264158_85271202_85271413_85275137_85275251_85276085_85276199_85276306_85276439_85276993_85277067_85279641_85279760_85279890_85279959_85283332_85283440_85285644_85286320_85292576_85293023_85294247_85294387_85296531_85296662_85297825_85297886_85298415_85298523_85306098_85306199_85306691_85306853_85307842_85307981_85310187_85310390_85313673_85313839_85315377_85315489_85320765_85320850_85327122_85327291_85328017_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85338913_85339042_85342202_85342300_85344420_85344527_85356231_85356340_85356453_85356555_85359835_85359946_85360041_85360181_85360278_85360393_85363140_85363328_85365240_85365495_85365866
ES_00056847	chr8	+	1572	5	NNC	ENSMUSG00000034656.19	novel	1153	5	NA	NA	24	404	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	17.2626765016321	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGCTCAGTGTGTAAAGG	NA	False	NA	11	True	AATAAA	-17	NA	85328122	85340075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85328200_85328384_85328451_85328552_85328669_85338226_85338378_85338913
ES_00056849	chr8	+	2048	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	163.36687049399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415924	85426415	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417430_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00056851	chr8	+	1714	4	FSM	ENSMUSG00000034041.6	ENSMUST00000037165.6	1714	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTTATTTCTT	6594	False	NA	NA	False	NA	NA	NA	85428172	85431345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85428617_85429268_85429625_85429715_85429808_85430523
ES_00056852	chr8	+	1817	13	FSM	ENSMUSG00000003808.19	ENSMUST00000109754.2	1795	13	-22	0	0	0	multi-exon	TRUE	canonical	3	15	junction_9	182.281585435526	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583623	85595886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594381_85594548_85594637_85594716_85594852_85594968_85595494
ES_00056853	chr8	+	1984	3	NIC	ENSMUSG00000003824.13	novel	685	4	NA	NA	-4	64	intron_retention	FALSE	canonical	3	832	junction_1	576	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTCCCATCCCATGA	NA	False	NA	NA	False	NA	NA	NA	85598817	85614914	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85599462_85612563_85612753_85613763
ES_00056854	chr8	+	810	6	NNC	ENSMUSG00000003824.13	novel	1686	5	NA	NA	-4	43044	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	645.007720884022	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACACACACACCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	85598817	85657894	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763_85614024_85657865
ES_00056855	chr8	+	600	4	FSM	ENSMUSG00000003812.14	ENSMUST00000134569.2	590	4	-10	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	38.6637929966641	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGTAAGCCTTGATGTT	NA	False	NA	NA	False	NA	NA	NA	85635349	85636593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636400
ES_00056856	chr8	+	1118	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	1.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640019	85649544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85640158_85647022_85647134_85648675
ES_00056857	chr8	+	1120	3	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	44.5	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640040	85649544	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85640158_85646999_85647134_85648675
ES_00056860	chr8	+	2609	22	NNC	ENSMUSG00000052566.9	novel	2580	22	NA	NA	-18	0	intron_retention	TRUE	canonical	3	109	junction_18	72.710434300971	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85717213	85729978	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727952_85728054_85729132_85729244_85729315_85729388_85729493
ES_00056861	chr8	+	5145	25	NIC	ENSMUSG00000031691.15	novel	4884	25	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	118.418506612494	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763753	85784212	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767611_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00056862	chr8	+	4860	25	NIC	ENSMUSG00000031691.15	novel	4884	25	NA	NA	37	0	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	75.1550134167154	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763833	85784212	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85763921_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00056867	chr8	+	1224	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026317	86034699	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ES_00056868	chr8	+	957	8	FSM	ENSMUSG00000036879.16	ENSMUST00000159882.8	1013	8	-20	76	-3	-76	multi-exon	FALSE	canonical	3	66	junction_1	24.1356709507919	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGATTCTAGTACAGCT	NA	False	NA	NA	False	TTTAAA	-44	NA	86567616	86648969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755
ES_00056869	chr8	+	4489	31	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	24.2166379903478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGAAGCAATGTCTGCT	NA	False	NA	4	True	NA	NA	NA	86567644	86787266	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_86567733_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ES_00056872	chr8	+	446	1	FSM	ENSMUSG00000074178.4	ENSMUST00000098532.3	905	1	118	341	118	-341	mono-exon	FALSE	NA	NA	NA	NA	NA	773	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTGTGGGATTGACTGG	NA	False	NA	NA	False	NA	NA	NA	87472444	87472890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_87472400_87472900
ES_00056873	chr8	+	235	1	Intergenic	novelGene_3977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAGACTGAGGCAGGAG	7611	False	NA	NA	False	NA	NA	NA	88704961	88705196	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_88705000_88705200
ES_00056874	chr8	+	1404	6	FSM	ENSMUSG00000036810.17	ENSMUST00000117775.2	728	6	-59	-617	-21	0	multi-exon	FALSE	canonical	1	1	junction_5	74.0027026533491	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTTTATT	NA	False	NA	17	True	NA	NA	NA	88845375	88858315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88857344
ES_00056875	chr8	+	2310	5	FSM	ENSMUSG00000036810.17	ENSMUST00000128290.2	1616	5	-52	-642	-21	12	multi-exon	FALSE	canonical	3	147	junction_2	25.4656631564937	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTCTTTGGTTTATTGT	NA	False	NA	25	True	AATAAA	-27	NA	88845375	88861750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88857030_88860415
ES_00056876	chr8	+	3211	16	NNC	ENSMUSG00000031657.17	novel	3251	15	NA	NA	-5	79346	intron_retention	FALSE	non_canonical	0	0	junction_15	71.3409341744898	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	88864477	88978001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486_88898578_88977968
ES_00056877	chr8	+	4657	18	FSM	ENSMUSG00000036712.16	ENSMUST00000211554.2	4638	18	-19	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	16.8699483019167	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTATAAATATTGCTGT	NA	False	NA	8	True	TATAAA	-17	NA	89423655	89475083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_89423728_89428932_89429067_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ES_00056878	chr8	+	678	3	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	16	junction_1	4	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTAATGCCTCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	89768008	89795968	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_89768425_89784011_89784080_89795774
ES_00056880	chr8	+	11440	39	NNC	ENSMUSG00000056608.15	novel	9419	38	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_31	7.04010080826842	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	4113	False	NA	4	True	ATTAAA	-15	NA	91635179	91781136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_91635264_91658876_91660491_91683010_91683343_91699752_91699865_91703548_91703696_91704107_91704177_91704255_91704312_91705509_91705628_91710089_91710177_91710895_91711034_91712686_91712809_91716057_91716302_91721087_91721265_91723467_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761535_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ES_00056882	chr8	+	2040	14	FSM	ENSMUSG00000033192.6	ENSMUST00000046290.3	2811	14	-5	776	-5	-320	multi-exon	TRUE	canonical	2	3	junction_10	2.47591952914324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACTGGTCAGCAATTAAT	NA	False	NA	NA	False	AATAAA	-21	NA	93581961	93645131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870_93641007_93644662
ES_00056883	chr8	+	5228	14	NNC	ENSMUSG00000033009.16	novel	5310	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	45	junction_13	32.7128442284494	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGGTGGTAATTTATA	NA	False	NA	7	True	AATAAA	-17	NA	94763887	94794549	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_94764071_94765592_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806_94792872_94792891
ES_00056884	chr8	+	389	3	FSM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	0	-1	0	1	multi-exon	TRUE	canonical	3	461	junction_1	6516.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTGTCTCTGTGCATT	NA	False	NA	34	True	AATAAA	-20	NA	94899487	94900193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_94899581_94899754_94899821_94899963
ES_00056889	chr8	+	1323	1	FSM	ENSMUSG00000110630.2	ENSMUST00000211969.2	1516	1	199	-6	199	6	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGGTCATGGTATTTCA	NA	False	NA	NA	False	NA	NA	NA	105169101	105170424	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_105169100_105170400
ES_00056890	chr8	+	552	2	NNC	ENSMUSG00000048371.9	novel	5692	2	NA	NA	17	4	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	0	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCTTTAGTTCGAACGT	NA	False	NA	NA	False	AATAAA	-20	NA	105318099	105325662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_105318228_105325238
ES_00056891	chr8	+	3708	2	NNC	ENSMUSG00000048371.9	novel	5692	2	NA	NA	3882	28155	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	105321964	105353813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_105325648_105353788
ES_00056892	chr8	+	2709	5	FSM	ENSMUSG00000031885.15	ENSMUST00000109395.8	2709	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	76.5714535580983	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3816	False	NA	74	True	ATTAAA	-14	NA	105897375	105944613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105942535
ES_00056893	chr8	+	1855	3	FSM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	46	0	12	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGATCTCGAGTCAGCT	1576	False	NA	NA	False	AATAAA	-20	NA	105991325	105995958	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_105991393_105993326_105993798_105994641
ES_00056894	chr8	+	1474	2	ISM	ENSMUSG00000014786.9	ENSMUST00000212772.2	3972	11	9223	534	9223	-534	3prime_fragment	FALSE	canonical	2	7	junction_1	0	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTCCTCTGTCCATTT	9905	False	NA	NA	False	ATTAAA	-16	NA	106091316	106095979	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_106091449_106094637
ES_00056895	chr8	+	1613	5	FSM	ENSMUSG00000014782.17	ENSMUST00000161672.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	2.8613807855649	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGACTGGGCATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	106107125	106109487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106107661_106108026_106108144_106108265_106108491_106108572_106108689_106108867
ES_00056896	chr8	+	3886	12	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-99	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_11	123.55405013914	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363100	106409554	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408072
ES_00056897	chr8	+	3948	13	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	161.122624109713	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363210	106409554	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_106363353_106370147_106370265_106380010_106380180_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406705_106406892_106408066
ES_00056898	chr8	+	4418	38	NIC	ENSMUSG00000050357.10	novel	4194	39	NA	NA	-267	-6	combination_of_known_junctions	FALSE	canonical	3	15	junction_36	9.80481538199191	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTGAATGAAACAGCGT	NA	False	NA	NA	False	ATTAAA	-1	NA	106412638	106424813	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415345_106415426_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424499_106424578_106424662
ES_00056899	chr8	+	1261	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	12	0	12	0	multi-exon	FALSE	canonical	2	20	junction_1	3	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427797	106430125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106427950_106428805_106429029_106429239
ES_00056900	chr8	+	290	2	Antisense	novelGene_ENSMUSG00000037415.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAAAGTCAACTGTCT	NA	False	NA	NA	False	NA	NA	NA	106529087	106531152	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_106529244_106531018
ES_00056902	chr8	+	4765	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	4	0	intron_retention	FALSE	canonical	3	40	junction_14	98.4644605936578	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3260	False	NA	14	True	AATAAA	-6	NA	106607516	106619840	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614749_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ES_00056903	chr8	+	4762	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	4	0	intron_retention	FALSE	canonical	3	40	junction_14	87.3799176012429	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3260	False	NA	14	True	AATAAA	-6	NA	106607516	106619840	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614749_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ES_00056910	chr8	+	204	2	Antisense	novelGene_ENSMUSG00000057657.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCATTCATGCAAACTT	NA	False	NA	NA	False	NA	NA	NA	107972852	108061549	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_107972880_108061372
ES_00056911	chr8	+	5235	3	FSM	ENSMUSG00000003847.17	ENSMUST00000151582.2	5152	3	5	-88	5	88	multi-exon	FALSE	canonical	2	2	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACGAGTGAATACCTTCC	NA	False	NA	NA	False	NA	NA	NA	108020106	108056027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_108020531_108022212_108022267_108051270
ES_00056913	chr8	+	238	2	Antisense	novelGene_ENSMUSG00000003849.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	84	junction_1	0	2474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTAAATTTTAGAATAT	NA	False	NA	NA	False	AAGAAA	-3	NA	108106349	108126952	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_108106374_108126738
ES_00056914	chr8	+	2769	23	FSM	ENSMUSG00000031930.12	ENSMUST00000212205.2	2758	23	-11	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	144.720334461373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCTGTTGCAAAGCCAG	NA	False	NA	10	True	AATAAA	-21	NA	108163020	108283844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
ES_00056916	chr8	+	218	1	Intergenic	novelGene_4007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTAGAAAGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	108280225	108280443	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_108280200_108280400
ES_00056917	chr8	+	250	2	Antisense	novelGene_ENSMUSG00000039067.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	723	junction_1	0	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCCATCTTGCTGTACC	NA	False	NA	NA	False	NA	NA	NA	108280225	108318154	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_108280277_108317955
ES_00056918	chr8	+	254	1	FSM	ENSMUSG00000104292.2	ENSMUST00000191614.2	5208	1	1348	3606	1348	-3606	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCCATCTTTCCAGCCC	NA	False	NA	NA	False	NA	NA	NA	109465572	109465826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_109465600_109465800
ES_00056921	chr8	+	2032	8	NNC	ENSMUSG00000059854.9	novel	15783	87	NA	NA	69616	45872	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	5.93845991166472	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTCTTTAATATTGACA	NA	False	NA	NA	False	ATTAAA	-14	NA	111240736	111260125	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_111240920_111241461_111241636_111245709_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307
ES_00056927	chr8	+	205	2	Intergenic	novelGene_4012	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	2450	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTGCCCTGGATTAAAG	NA	False	NA	NA	False	AAAAAG	-4	NA	111990374	111991460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_111990430_111991310
ES_00056934	chr8	+	1125	8	ISM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	8	6428	1	5927	5prime_fragment	FALSE	canonical	3	58	junction_7	25.2303671905787	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTGCGGCTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	115166442	115438991	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726
ES_00056935	chr8	+	691	4	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	-41	5309	6	-5309	5prime_fragment	FALSE	canonical	3	123	junction_1	3.39934634239519	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGTGTTACAGTGTGAG	NA	False	NA	NA	False	ATTAAA	-18	NA	115166400	115175249	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899
ES_00056949	chr8	+	2195	13	NIC	ENSMUSG00000025316.17	novel	1970	13	NA	NA	4	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_8	84.450511477959	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677286	122752916	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705340_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ES_00056950	chr8	+	2192	13	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	1	-8	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	80.1271125566538	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGCCACAGAGGCTCAG	NA	False	NA	-1	True	AATAAA	-7	NA	122677319	122752908	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122750741_122750886_122752302
ES_00056966	chr8	+	3265	14	FSM	ENSMUSG00000001482.16	ENSMUST00000108832.8	3242	14	-23	0	-4	0	multi-exon	FALSE	canonical	3	15	junction_2	108.849605816422	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169720	124190009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_124169791_124172836_124172924_124174055_124174103_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ES_00056967	chr8	+	3458	13	NNC	ENSMUSG00000001482.16	novel	3191	12	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	101.478651285217	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124170085	124190001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_124170185_124173586_124173893_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ES_00056969	chr8	+	3166	12	NIC	ENSMUSG00000001482.16	novel	589	4	NA	NA	110	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	80.3485177058087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124173787	124190009	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_124173893_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ES_00056974	chr8	+	2989	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	41	0	21	0	intron_retention	FALSE	canonical	3	83	junction_2	14.0890028036054	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125448918	125460862	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
ES_00056975	chr8	+	2935	5	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	29	-6	intron_retention	FALSE	canonical	3	24	junction_2	37.5724300518346	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTAACTAAGGTTGTCT	NA	False	NA	15	True	AATAAA	-24	NA	125448926	125460856	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_125449082_125451994_125452115_125455107_125455222_125457530_125457756_125458535
ES_00056979	chr8	+	5821	25	NIC	ENSMUSG00000025812.19	novel	5815	25	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	35.7828132239798	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTCTCTAGTTTT	NA	False	NA	13	True	AATAAA	-21	NA	127790808	128338767	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ES_00056980	chr8	+	3766	17	FSM	ENSMUSG00000025812.19	ENSMUST00000160593.8	5310	17	0	1544	0	-1544	multi-exon	FALSE	canonical	3	51	junction_15	27.1362303940691	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGAGGGTTAAAGCATGT	NA	False	NA	NA	False	NA	NA	NA	127790847	128137138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036
ES_00056985	chr8	-	5280	3	ISM	ENSMUSG00000005534.11	ENSMUST00000091291.5	9355	21	120122	0	60	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGTGTAGTATACAGG	NA	False	NA	1	True	AATAAA	-15	NA	3209495	3200921	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_3206024_3208695_3208831_3209452
ES_00056986	chr8	-	800	2	Genic_Genomic	ENSMUSG00000066902.8	novel	432	1	NA	NA	-291	22879	multi-exon	TRUE	non_canonical	0	0	junction_1	0	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	3634521	3610919	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_3610951_3633752
ES_00056987	chr8	-	911	6	FSM	ENSMUSG00000019470.13	ENSMUST00000159235.2	911	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	165.313762282515	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGTGGGTGCCTAGACC	1045	False	NA	NA	False	NA	NA	NA	3671282	3665994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668858_3669094_3671227
ES_00056988	chr8	-	549	3	FSM	ENSMUSG00000064125.15	ENSMUST00000175906.2	759	3	210	0	-30	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTAATAAGTTAATTCCC	8958	False	NA	NA	False	NA	NA	NA	4266942	4265971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4266072_4266181_4266556_4266867
ES_00056991	chr8	-	216	1	FSM	ENSMUSG00000040028.11	ENSMUST00000207615.2	4808	1	3244	1348	368	-661	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACTCCCCGTGCTATGTA	NA	False	NA	NA	False	NA	NA	NA	4362251	4362035	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4362000_4362300
ES_00056992	chr8	-	487	1	FSM	ENSMUSG00000048484.5	ENSMUST00000058918.5	827	1	195	145	195	-145	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGCGGCGGCGGCTGA	NA	False	NA	NA	False	NA	NA	NA	4728170	4727683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4727700_4728200
ES_00056993	chr8	-	5028	2	FSM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	7068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTAGAATCAGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	10026299	10019048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_10023808_10026030
ES_00056994	chr8	-	2334	1	ISM	ENSMUSG00000038894.8	ENSMUST00000040514.8	6323	2	21444	0	21444	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGATTGGAGGACATTTT	NA	False	NA	NA	False	AATAAA	-27	NA	11037014	11034680	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_11034700_11037000
ES_00056995	chr8	-	2215	6	FSM	ENSMUSG00000056228.11	ENSMUST00000211172.2	2212	6	0	-3	0	0	multi-exon	FALSE	canonical	3	187	junction_3	23.777300099044	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTATGCTGCCCACTGGT	NA	False	NA	-48	True	ATTAAA	-37	NA	11570386	11564008	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923
ES_00056996	chr8	-	1760	15	NNC	ENSMUSG00000056228.11	novel	1902	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_14	53.8474792391265	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCCTATGCTGCCCACT	NA	False	NA	-51	True	ATTAAA	-34	NA	11600744	11564011	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600563
ES_00056999	chr8	-	7012	6	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	18	2	intron_retention	FALSE	canonical	3	89	junction_3	156.362399572276	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685736	11661580	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11678531_11682865_11683019_11685410
ES_00057000	chr8	-	11411	5	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	18	2	intron_retention	FALSE	canonical	3	398	junction_4	54.7374414820423	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685736	11661580	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_11662948_11665814_11665911_11669061_11678531_11682865_11683019_11685410
ES_00057001	chr8	-	8734	6	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	18	2	intron_retention	FALSE	canonical	3	27	junction_3	192.006874876917	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685736	11661580	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_11665911_11669061_11669298_11670261_11673859_11678438_11678531_11682865_11683019_11685410
ES_00057002	chr8	-	2450	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	-3	0	2	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	0	True	AATAAA	-17	NA	11685754	11661580	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
ES_00057003	chr8	-	5948	4	ISM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	11242	0	114	0	3prime_fragment	FALSE	canonical	3	159	junction_3	165.724671267336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	4229	False	NA	-2	True	AATAAA	-15	NA	11674512	11661582	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261
ES_00057005	chr8	-	863	2	Genic_Genomic	ENSMUSG00000109933.2	novel	785	1	NA	NA	-2	30556	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAACATTAAACCACAAAC	NA	False	NA	NA	False	NA	NA	NA	11734245	11702902	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_11702932_11733411
ES_00057009	chr8	-	2937	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110839.10	2937	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	17.0105849399719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	-2	True	AATAAA	-15	NA	13338126	13305962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13307977_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ES_00057011	chr8	-	2449	4	NNC	ENSMUSG00000050052.13	novel	373	4	NA	NA	-27	0	intron_retention	FALSE	canonical	3	17	junction_3	126.043202469982	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4498	False	NA	-4	True	ATTAAA	-18	NA	14025059	14002007	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_14004136_14005719_14005818_14024540_14024730_14025025
ES_00057012	chr8	-	299	2	Intergenic	novelGene_3884	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	30	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAGAGAAAGAGATGAGAT	NA	False	NA	NA	False	NA	NA	NA	20158089	19732285	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_19732385_20157889
ES_00057014	chr8	-	1834	1	FSM	ENSMUSG00000095766.3	ENSMUST00000178899.3	794	1	-138	-902	-138	902	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCCCCCCCCCCAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	21097640	21095806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_21095800_21097600
ES_00057015	chr8	-	4430	6	FSM	ENSMUSG00000031482.10	ENSMUST00000210020.2	4430	6	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_3	28.5124534195148	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTAGGGTAGTATGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	22888560	22866712	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22867998_22869299_22869459_22870853_22873361_22879829_22880089_22885728_22885844_22888455
ES_00057017	chr8	-	3706	21	FSM	ENSMUSG00000031537.16	ENSMUST00000135326.8	3705	21	0	-1	0	0	multi-exon	FALSE	canonical	2	3	junction_9	25.4103817366052	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196550	23149227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159742_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00057018	chr8	-	3537	22	FSM	ENSMUSG00000031537.16	ENSMUST00000125314.8	3536	22	0	-1	0	0	multi-exon	FALSE	canonical	2	3	junction_10	24.8396216299904	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196556	23149227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159742_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ES_00057021	chr8	-	3142	12	NIC	ENSMUSG00000031557.17	novel	5176	12	NA	NA	-10	-69	combination_of_known_junctions	FALSE	canonical	2	6	junction_11	41.1584320513503	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCAGTGGGCTTCTTTCTCT	8165	False	NA	-49	True	AAGAAA	-12	NA	25581372	25530924	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25581298
ES_00057022	chr8	-	2206	1	NIC	ENSMUSG00000065954.12	novel	1661	9	NA	NA	-12999	4195	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCATAGCCAAACGTTGC	NA	False	NA	NA	False	NA	NA	NA	25670548	25668342	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_25668300_25670500
ES_00057025	chr8	-	1063	1	FSM	ENSMUSG00000037363.10	ENSMUST00000209734.2	1063	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAATAAACATG	2374	False	NA	NA	False	ACTAAA	-42	NA	26087504	26086441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26086400_26087500
ES_00057028	chr8	-	2983	4	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	4638	-821	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	40.1441845795323	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	AATAAA	-15	NA	26479523	26471452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193
ES_00057033	chr8	-	3592	1	FSM	ENSMUSG00000110317.2	ENSMUST00000209414.2	3592	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGTGCCTCATCTCAGT	NA	False	NA	NA	False	AATAAA	-28	NA	26645507	26641915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26641900_26645500
ES_00057034	chr8	-	1784	1	FSM	ENSMUSG00000091154.3	ENSMUST00000163731.2	616	1	143	-1311	143	1306	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGCATCTGTGCTACCT	NA	False	NA	NA	False	NA	NA	NA	27532882	27531098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27531100_27532900
ES_00057036	chr8	-	1605	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTATGTTCTCCTTTTCT	NA	False	NA	-3	True	AATAAA	-21	NA	27713856	27687482	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ES_00057037	chr8	-	1296	9	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	21	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.3727616527802	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAATCCTGGAGGAAC	NA	False	NA	-29	True	NA	NA	NA	27713835	27687508	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_27687746_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ES_00057038	chr8	-	6241	35	NNC	ENSMUSG00000031583.14	novel	6262	34	NA	NA	7	12	at_least_one_novel_splicesite	FALSE	non_canonical	2	10	junction_34	9.0723733651955	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGATTATATATCTGTG	NA	False	NA	NA	False	NA	NA	NA	33875548	33724399	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_33724608_33724633_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875479
ES_00057039	chr8	-	525	3	FSM	ENSMUSG00000031586.18	ENSMUST00000183122.2	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	340.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTGTATAATTTTAAGAA	NA	False	NA	NA	False	AATAAA	-18	NA	34287242	34274099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_34274215_34285109_34285179_34286901
ES_00057041	chr8	-	776	2	Genic_Genomic	ENSMUSG00000063412.5	novel	736	1	NA	NA	0	85675	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCGAAAGCAAACCATTTT	NA	False	NA	NA	False	NA	NA	NA	34578891	34492480	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_34492515_34578149
ES_00057043	chr8	-	694	1	FSM	ENSMUSG00000098154.3	ENSMUST00000183049.3	1038	1	366	-22	366	22	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAGGACACTGAGAGCAA	NA	False	NA	NA	False	AAGAAA	-19	NA	36840421	36839727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_36839700_36840400
ES_00057044	chr8	-	2469	6	FSM	ENSMUSG00000031601.17	ENSMUST00000135269.8	2461	6	0	-8	0	1	multi-exon	FALSE	canonical	3	8	junction_1	206.645203186524	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGACTGATGGCTTT	NA	False	NA	0	True	AATAAA	-24	NA	40964759	40945579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_40947157_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ES_00057045	chr8	-	2982	6	FSM	ENSMUSG00000031601.17	ENSMUST00000149992.2	2982	6	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	73.8495768437437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAATGTGATTTCATA	NA	False	NA	NA	False	AATAAA	-6	NA	40964345	40946076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055
ES_00057047	chr8	-	2679	12	FSM	ENSMUSG00000039431.17	ENSMUST00000174205.8	2679	12	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_11	14.894116648657	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTTGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	41087835	41007701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
ES_00057048	chr8	-	230	2	Antisense	novelGene_ENSMUSG00000031592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAACAACAAAAATAACCCA	NA	False	NA	NA	False	NA	NA	NA	41783236	41733361	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_41733388_41783032
ES_00057049	chr8	-	1516	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38807	10	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_4	60.6835216176382	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTCTGAGCGCTCTGC	NA	False	NA	10	True	TATAAA	-29	NA	43633330	43582833	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593679_43593776_43595725_43595759_43618053_43618097_43633233
ES_00057050	chr8	-	2051	10	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38807	10	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_8	71.0164300238567	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTCTGAGCGCTCTGC	NA	False	NA	10	True	TATAAA	-29	NA	43633330	43582833	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43597362_43597564_43618053_43618097_43633233
ES_00057051	chr8	-	1407	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38756	-2	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTTTATTGCTTTC	NA	False	NA	-2	True	TATAAA	-17	NA	43633279	43582845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
ES_00057052	chr8	-	2032	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38797	1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	73.261091310463	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTTTATTGCTTTCTGA	NA	False	NA	1	True	TATAAA	-20	NA	43633320	43582842	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594542_43595725_43595759_43618053_43618097_43633233
ES_00057053	chr8	-	1744	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759987	43748099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
ES_00057054	chr8	-	2242	14	FSM	ENSMUSG00000070044.16	ENSMUST00000155230.2	2661	14	98	321	98	-321	multi-exon	FALSE	canonical	0	0	junction_1	1.30995279737895	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGAGCAGCATGCCTG	NA	False	NA	NA	False	AATAAA	-16	NA	45811701	45792116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_45792410_45794019_45794099_45794192_45794322_45795427_45795552_45797494_45797699_45798008_45798122_45801478_45801634_45801987_45802179_45803437_45803609_45804699_45804826_45806855_45806999_45808268_45808408_45808658_45808767_45811434
ES_00057055	chr8	-	3206	19	FSM	ENSMUSG00000038291.17	ENSMUST00000041582.15	3206	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	14.0391867795859	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTGCTCAAAGGTATT	NA	False	NA	NA	False	AATAAA	-14	NA	46604742	46486302	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098_46577184_46604598
ES_00057056	chr8	-	1328	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	0	62668	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3341.33329488395	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTTTTCAATTGTACT	NA	False	NA	NA	False	NA	NA	NA	46664067	46597165	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_46597198_46660208_46660658_46661434_46661576_46662058_46662546_46663848
ES_00057059	chr8	-	464	2	Intergenic	novelGene_3930	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	2067	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAAATGCATGAATT	NA	False	NA	NA	False	NA	NA	NA	47789594	47788351	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_47788598_47789376
ES_00057060	chr8	-	523	3	FSM	ENSMUSG00000038102.16	ENSMUST00000131551.2	600	3	0	77	0	-77	multi-exon	FALSE	canonical	3	136	junction_2	15.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTAATCATGTCTTTGT	9491	False	NA	NA	False	NA	NA	NA	47981065	47977768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_47978106_47979974_47980090_47980994
ES_00057061	chr8	-	524	2	Genic_Genomic	ENSMUSG00000062458.6	novel	436	1	NA	NA	0	69168	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48085799	48016195	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_48016228_48085307
ES_00057062	chr8	-	3836	4	Fusion	ENSMUSG00000063049.5_ENSMUSG00000038069.7	novel	3393	3	NA	NA	0	243	multi-exon	FALSE	non_canonical	0	0	junction_1	51.8523544949182	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCAAAGCTCTCCAAAGCT	NA	False	NA	NA	False	NA	NA	NA	48166966	48119969	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_-_48120417_48162483_48165330_48165922_48166054_48166554
ES_00057063	chr8	-	8663	27	FSM	ENSMUSG00000031561.17	ENSMUST00000190840.8	8663	27	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_26	19.7006067248053	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGGATTTAATAATGGAT	NA	False	NA	NA	False	NA	NA	NA	49127719	48680960	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_48682237_48685042_48685174_48688324_48689937_48693279_48693577_48707444_48707681_48709866_48710043_48729064_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48788623_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49099292_49099572_49127444
ES_00057064	chr8	-	204	1	Intergenic	novelGene_3935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-6	NA	50788663	50788459	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_50788500_50788700
ES_00057065	chr8	-	1423	1	FSM	ENSMUSG00000052825.7	ENSMUST00000182415.2	992	1	-129	-302	-129	302	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCTATTTAAAAATTTGA	NA	False	NA	NA	False	ATTAAA	-29	NA	52650220	52648797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_52648800_52650200
ES_00057070	chr8	-	5208	13	NNC	ENSMUSG00000004319.16	novel	3768	13	NA	NA	-10187	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_12	90.9308345208965	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61418454	61363422	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61418315
ES_00057074	chr8	-	680	3	FSM	ENSMUSG00000058056.17	ENSMUST00000136825.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	1	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAAGAGGCCGCAGTCC	NA	False	NA	NA	False	NA	NA	NA	61986875	61978154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_61978197_61984945_61985096_61986387
ES_00057076	chr8	-	5126	14	FSM	ENSMUSG00000031605.9	ENSMUST00000210166.2	5126	14	0	0	0	0	multi-exon	FALSE	canonical	1	64	junction_9	38.6963600875285	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGGTTTTACCAGTGTG	NA	False	NA	-2	True	AATAAA	-28	NA	65302576	65192881	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65196133_65202065_65202207_65202728_65202858_65204762_65204865_65205682_65205881_65207318_65207437_65211125_65211276_65212766_65212884_65217156_65217267_65232731_65232895_65264331_65264454_65275642_65275750_65287094_65287221_65302284
ES_00057079	chr8	-	2239	1	NIC	ENSMUSG00000111594.2	novel	1480	6	NA	NA	19587	-8535	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAAACAAAACAACTCTT	392	False	NA	NA	False	NA	NA	NA	70018227	70015988	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70016000_70018200
ES_00057080	chr8	-	2873	5	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	248	507	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	46.3215662515852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAATTCCATGTATACT	NA	False	NA	NA	False	NA	NA	NA	70077948	70063000	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70077727
ES_00057083	chr8	-	2347	2	NNC	ENSMUSG00000043090.19	novel	2680	6	NA	NA	11265	14830	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTGGCTAGTCCATA	NA	False	NA	NA	False	NA	NA	NA	70216296	70199145	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70199170_70213973
ES_00057084	chr8	-	3500	13	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-128	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_6	298.384399726259	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70427049	70361305	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00057085	chr8	-	3489	13	NNC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_4	345.566161859379	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70448903	70361305	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365872_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00057086	chr8	-	3283	12	NIC	ENSMUSG00000036180.16	novel	3812	13	NA	NA	117	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	405.675378100143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70448766	70361305	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00057087	chr8	-	3487	13	NNC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-128	0	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_4	313.580354755984	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70427049	70361306	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365872_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00057088	chr8	-	3396	12	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-128	-1	combination_of_known_splicesites	FALSE	canonical	3	46	junction_11	397.311439761416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTCACCTGTGTGGAAA	NA	False	NA	-26	True	AATAAA	-15	NA	70427049	70361307	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70426739
ES_00057089	chr8	-	3412	12	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-128	-3	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	313.771143635791	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGCTCACCTGTGTGGA	NA	False	NA	-28	True	AATAAA	-13	NA	70427049	70361309	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00057090	chr8	-	3407	12	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-128	-11	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	379.372884012507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAACTCCATGCTCACC	NA	False	NA	-36	True	AATAAA	-5	NA	70427049	70361317	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00057091	chr8	-	2926	13	ISM	ENSMUSG00000031858.17	ENSMUST00000212451.2	1931	19	13241	-922	5021	0	intron_retention	FALSE	canonical	3	104	junction_6	59.3815347281178	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTTTTTTTTTTTTTTT	6373	False	NA	-13	True	NA	NA	NA	70482143	70471291	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476260_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268
ES_00057092	chr8	-	1121	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	20.7590341779188	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9603	False	NA	2	True	AATAAA	-18	NA	70591746	70585915	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
ES_00057093	chr8	-	3088	9	FSM	ENSMUSG00000002346.17	ENSMUST00000063788.8	3081	9	0	-7	0	7	multi-exon	TRUE	non_canonical	0	0	junction_1	10.6389614154766	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTACTTCTTCAACTCTGG	NA	False	NA	NA	False	AATAAA	-20	NA	70664906	70636982	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70637876_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ES_00057095	chr8	-	1491	4	FSM	ENSMUSG00000002343.12	ENSMUST00000135931.2	1414	4	-17	-60	0	60	multi-exon	FALSE	canonical	3	75	junction_3	12.0830459735946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTCATGTTAAGCACA	4668	False	NA	NA	False	NA	NA	NA	70687116	70677199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686759
ES_00057097	chr8	-	1752	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	1949	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	289.113299590316	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70973791	70966045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70973137
ES_00057099	chr8	-	1560	16	FSM	ENSMUSG00000070003.8	ENSMUST00000211134.2	1549	16	0	-11	0	8	multi-exon	FALSE	canonical	3	428	junction_1	298.200603621119	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGATGTCTTTTACTTG	NA	False	NA	-2	True	AATAAA	-25	NA	71060952	71050131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ES_00057100	chr8	-	1418	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-147	2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	128.073763468124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTCTCAGTGACCTTGGC	507	False	NA	-4	True	AATAAA	-20	NA	71085253	71082040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71085141
ES_00057101	chr8	-	1321	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-187	2	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_3	126.388290596875	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTCTCAGTGACCTTGGC	467	False	NA	-4	True	AATAAA	-20	NA	71085293	71082040	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71085245
ES_00057104	chr8	-	1862	3	FSM	ENSMUSG00000002910.12	ENSMUST00000212898.2	1860	3	0	-2	0	0	multi-exon	FALSE	canonical	3	102	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71290339	71287772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71288639_71288863_71289022_71289501
ES_00057105	chr8	-	2235	7	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	202	0	0	0	intron_retention	FALSE	canonical	0	0	junction_5	38.4476556141232	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71292162	71287772	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622
ES_00057106	chr8	-	3343	10	FSM	ENSMUSG00000035439.14	ENSMUST00000123495.8	3987	10	0	644	0	-644	multi-exon	FALSE	canonical	3	5	junction_5	195.273091456333	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACAGAGACAGTATTCAAA	612	False	NA	NA	False	NA	NA	NA	71725104	71701848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ES_00057108	chr8	-	4528	28	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	2968	621	combination_of_known_splicesites	TRUE	canonical	1	2	junction_27	3.31020784763027	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATAGTTTTGGTGACCTC	NA	False	NA	NA	False	NA	NA	NA	72108171	72081076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_72082368_72083159_72083320_72083597_72083691_72087160_72087309_72087532_72087614_72087813_72087871_72092343_72092468_72093999_72094153_72094496_72094586_72094772_72094851_72095735_72095820_72097196_72097341_72097516_72097614_72098328_72098456_72098541_72098628_72100544_72100679_72101541_72101677_72102191_72102282_72102497_72102567_72103170_72103322_72103767_72103932_72104596_72104713_72104877_72105048_72105161_72105304_72106031_72106260_72107447_72107668_72107776_72107849_72108146
ES_00057109	chr8	-	1603	13	NNC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	-373	-2056	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	22.4214678873222	218	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCAGCTCCATGCTCCC	NA	False	NA	NA	False	NA	NA	NA	72124774	72108306	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_72108386_72108898_72108946_72110646_72110756_72110899_72111446_72113085_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269_72124370_72124764
ES_00057111	chr8	-	2966	26	FSM	ENSMUSG00000070000.14	ENSMUST00000136640.8	2966	26	0	0	0	0	multi-exon	FALSE	non_canonical	1	4	junction_4	43.7501999995429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178310	72161296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167522_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ES_00057114	chr8	-	488	4	NNC	ENSMUSG00000074240.6	novel	585	5	NA	NA	5381	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.37704215656966	79	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGATCTCTGCCTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72961282	72958180	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_72958275_72959406_72959603_72960970_72961119_72961232
ES_00057115	chr8	-	1177	3	Genic_Genomic	ENSMUSG00000070713.6	novel	1151	1	NA	NA	0	26466	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	73059104	73031487	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_73031506_73056746_73056762_73057960
ES_00057119	chr8	-	2828	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	40	junction_7	97.0318172236252	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAGACTATCTTCTTTT	NA	False	NA	NA	False	TATAAA	-42	NA	73175299	73094839	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_73095369_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00057120	chr8	-	2924	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	42	junction_1	80.7011756547953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGAGACTATCTTCTT	NA	False	NA	NA	False	TATAAA	-40	NA	73175304	73094841	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_73095369_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ES_00057121	chr8	-	3027	8	NNC	ENSMUSG00000019731.14	novel	4383	6	NA	NA	0	49850	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	114.156355361354	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTTGAACTCAGAAATCC	NA	False	NA	NA	False	NA	NA	NA	73246458	73184634	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_73184675_73192116_73192147_73235910_73237838_73238504_73238751_73241964_73242091_73243295_73243434_73245685_73245757_73246009
ES_00057124	chr8	-	642	4	FSM	ENSMUSG00000044600.15	ENSMUST00000058733.9	642	4	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_1	11.0855260988773	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGGTGTCTTTGTCTGT	NA	False	NA	-6	True	NA	NA	NA	73324893	73321330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717
ES_00057126	chr8	-	4753	16	FSM	ENSMUSG00000004383.19	ENSMUST00000212459.2	4746	16	0	-7	0	7	multi-exon	FALSE	canonical	0	0	junction_14	11.2834194974554	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCCTCCCACCCTTGT	NA	False	NA	-1	True	AATAAA	-24	NA	74080168	73541219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74066821_74066915_74079093
ES_00057127	chr8	-	1149	1	FSM	ENSMUSG00000047657.7	ENSMUST00000079090.6	1309	1	222	-62	222	62	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTTTTAAGAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-7	NA	74477189	74476040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_74476000_74477200
ES_00057128	chr8	-	3188	2	FSM	ENSMUSG00000031688.5	ENSMUST00000034115.5	3204	2	13	3	13	-3	multi-exon	FALSE	canonical	2	3	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGATGCAGTTTTTAATCA	NA	False	NA	NA	False	ATTAAA	-32	NA	79163261	79159641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79162308_79162739
ES_00057129	chr8	-	290	1	FSM	ENSMUSG00000109768.2	ENSMUST00000209348.2	216	1	85	-159	85	159	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACCCATCTTGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	79504761	79504471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_79504500_79504800
ES_00057132	chr8	-	9033	13	FSM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	43	-2	43	0	multi-exon	FALSE	canonical	1	1	junction_5	3.65433532488012	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTGTGCCCTTTTAAA	4349	False	NA	0	True	ATTAAA	-19	NA	80784592	80692479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
ES_00057133	chr8	-	4045	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21261	7	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	171.228765106801	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTACTTTTTTCTTA	NA	False	NA	0	True	AATAAA	-24	NA	81585864	81491059	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
ES_00057136	chr8	-	1644	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	-97	-786	-51	-5	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTACTGAGTTCTTGTTTTA	NA	False	NA	-8	True	AATAAA	-26	NA	83500840	83490240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
ES_00057137	chr8	-	574	2	FSM	ENSMUSG00000031711.8	ENSMUST00000210958.2	457	2	-66	-51	-51	51	multi-exon	FALSE	canonical	3	495	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCATTTTCTCCTAGCCA	NA	False	NA	NA	False	NA	NA	NA	83500840	83499221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_83499641_83500685
ES_00057138	chr8	-	4686	9	FSM	ENSMUSG00000035151.13	ENSMUST00000177594.8	4704	9	16	2	16	-2	multi-exon	FALSE	canonical	2	3	junction_8	28.5019187950566	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGATAAAGCTATTGCAG	8186	False	NA	NA	False	AATAAA	-16	NA	84059099	84039262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058983
ES_00057139	chr8	-	1866	1	FSM	ENSMUSG00000110617.2	ENSMUST00000211819.2	1746	1	4	-124	4	124	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAGTGCCTGGGCAAAG	NA	False	NA	NA	False	NA	NA	NA	84205841	84203975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84204000_84205800
ES_00057140	chr8	-	731	2	FSM	ENSMUSG00000056155.7	ENSMUST00000070102.6	730	2	0	-1	0	1	multi-exon	FALSE	canonical	3	6	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCTTGGGACAAGGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	84903181	84900360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84900602_84902691
ES_00057141	chr8	-	1524	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTTGTCTGGCTTGCTT	NA	False	NA	-1	True	AATAAA	-20	NA	85389483	85387959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85388000_85389500
ES_00057142	chr8	-	1117	5	FSM	ENSMUSG00000001910.6	ENSMUST00000238434.2	1117	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	210.599590455442	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAGATAGAACCGGAC	4393	False	NA	NA	False	NA	NA	NA	85403624	85399768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85403050
ES_00057146	chr8	-	1259	8	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	0	14164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	746.360010521814	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGGGGCTGGTGAGATG	8418	False	NA	NA	False	NA	NA	NA	85751892	85730395	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_85730417_85744559_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
ES_00057150	chr8	-	233	1	FSM	ENSMUSG00000031703.9	ENSMUST00000210133.2	2741	1	2434	74	2434	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCTAACCTGGTCTATA	NA	False	NA	NA	False	NA	NA	NA	86465722	86465489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_86465500_86465700
ES_00057152	chr8	-	6497	8	NNC	ENSMUSG00000031652.12	novel	6469	7	NA	NA	6	30294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.018237482108	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGACTCCACATACCCAC	NA	False	NA	NA	False	NA	NA	NA	87611880	87504493	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_87504527_87567765_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
ES_00057153	chr8	-	3259	3	FSM	ENSMUSG00000031652.12	ENSMUST00000210029.2	3259	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	10.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGGAGTTGCTTCCTT	NA	False	NA	NA	False	AATAAA	-23	NA	87579048	87570946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_87571670_87573442_87575183_87578252
ES_00057154	chr8	-	4330	6	FSM	ENSMUSG00000045333.16	ENSMUST00000165770.9	4334	6	0	4	0	-2	multi-exon	FALSE	canonical	0	0	junction_5	8.74070935336486	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACACTGCCTGGTTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	88531067	88388441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826_88510042_88530979
ES_00057155	chr8	-	205	1	Intergenic	novelGene_3976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCTGTGAGACAAAAC	2392	False	NA	NA	False	NA	NA	NA	88633765	88633560	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_88633600_88633800
ES_00057156	chr8	-	2413	18	NNC	ENSMUSG00000031660.14	novel	3625	17	NA	NA	0	51024	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	127.418200912881	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	89088822	89006642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_89006683_89058938_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ES_00057157	chr8	-	2220	18	NNC	ENSMUSG00000031660.14	novel	3625	17	NA	NA	0	29897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.418200912881	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGGCTCAGTGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	89088642	89027769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_89027797_89058938_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ES_00057159	chr8	-	623	5	Intergenic	novelGene_3983	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	48.295962564173	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAACCCCAATCTGTG	NA	False	NA	NA	False	AATAAA	-1	NA	89779647	89772273	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89772405_89774349_89774422_89775330_89775532_89776215_89776356_89779568
ES_00057161	chr8	-	316	1	FSM	ENSMUSG00000094790.3	ENSMUST00000177870.3	272	1	-173	129	-173	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGAAGAAGAGGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	89873859	89873543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89873500_89873900
ES_00057162	chr8	-	3359	7	FSM	ENSMUSG00000043668.14	ENSMUST00000109621.10	3356	7	0	-3	0	3	multi-exon	FALSE	canonical	2	4	junction_1	2.82842712474619	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGTCCCTTGACTACG	NA	False	NA	NA	False	AATAAA	-19	NA	91074971	90973664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_90975646_90979279_90979361_90980902_90981131_90984502_90984773_90996856_90997112_91001259_91001323_91074490
ES_00057166	chr8	-	2622	4	FSM	ENSMUSG00000031734.14	ENSMUST00000175795.4	2748	4	124	2	-28	-2	multi-exon	FALSE	canonical	2	5	junction_1	2.82842712474619	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCGGCAGGTCTGCCACAT	NA	False	NA	NA	False	AATAAA	-25	NA	92528571	92525154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_92525605_92526038_92526106_92526300_92527427_92527592
ES_00057170	chr8	-	950	7	FSM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	234	0	234	0	multi-exon	FALSE	canonical	3	3	junction_6	876.397677363929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTAAGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	94763400	94746075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763253
ES_00057171	chr8	-	2611	17	NIC	ENSMUSG00000031755.7	novel	3064	17	NA	NA	436	-12	combination_of_known_junctions	FALSE	canonical	1	2	junction_15	8.84214870662103	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGGTCTTCCTTGTTGT	NA	False	NA	-15	True	AATAAA	-3	NA	94825120	94794593	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803584_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
ES_00057172	chr8	-	2697	1	FSM	ENSMUSG00000110588.2	ENSMUST00000211992.2	2665	1	-106	74	-106	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTACGTTTAATCCCCAGC	NA	False	NA	NA	False	NA	NA	NA	94900146	94897449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_94897400_94900100
ES_00057173	chr8	-	1789	9	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	1464	intron_retention	FALSE	non_canonical	0	0	junction_1	181.628010986742	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAAGACATGCACGCAC	3895	False	NA	NA	False	NA	NA	NA	95328320	95299301	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95299325_95301567_95302486_95306027_95306093_95309511_95309642_95313950_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ES_00057174	chr8	-	2030	9	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	0	14841	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.297709707256	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTCAGGGCCAGGAA	NA	False	NA	NA	False	NA	NA	NA	95559287	95531590	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95531620_95548641_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142
ES_00057175	chr8	-	2176	10	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	2	14841	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	543.292227483925	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTCAGGGCCAGGAA	NA	False	NA	NA	False	NA	NA	NA	95564984	95531590	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95531620_95548641_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
ES_00057176	chr8	-	1487	9	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	0	6460	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.297709707256	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCGAGGGCACCTTTCT	NA	False	NA	NA	False	NA	NA	NA	95559287	95539971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95540000_95549183_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142
ES_00057177	chr8	-	2532	9	FSM	ENSMUSG00000040631.9	ENSMUST00000046461.9	2590	9	58	0	58	0	multi-exon	FALSE	canonical	0	0	junction_8	2.10653744329409	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGTTGATCAATAAATA	NA	False	NA	2	True	AATAAA	-18	NA	95602900	95590487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95591876_95591969_95592091_95592248_95592388_95593084_95593275_95593375_95593496_95593755_95593871_95594019_95594128_95597487_95597697_95602758
ES_00057178	chr8	-	2271	9	FSM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	33	0	33	0	multi-exon	FALSE	canonical	2	7	junction_8	3.67423461417477	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGAGTTCTGAAAGTGTA	NA	False	NA	0	True	AATAAA	-19	NA	95644693	95629496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95644609
ES_00057179	chr8	-	1121	1	FSM	ENSMUSG00000110516.2	ENSMUST00000212448.2	1006	1	-116	1	-116	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAAGAAAAAAAT	852	False	NA	NA	False	NA	NA	NA	95817420	95816299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95816300_95817400
ES_00057180	chr8	-	348	3	FSM	ENSMUSG00000031788.15	ENSMUST00000212786.2	359	3	11	0	11	0	multi-exon	FALSE	canonical	2	3	junction_2	23.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAGAAAATACAGGTAAAAG	261	False	NA	NA	False	NA	NA	NA	95864515	95855836	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_95855963_95861344_95861488_95864436
ES_00057191	chr8	-	2318	2	FSM	ENSMUSG00000069920.11	ENSMUST00000093217.9	2325	2	7	0	7	0	multi-exon	FALSE	canonical	2	3	junction_1	0	910	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTTCTCTTCTCAATT	9970	False	NA	NA	False	ATTAAA	-15	NA	105981776	105979270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105981475_105981662
ES_00057192	chr8	-	2757	14	FSM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	-260	0	-257	0	multi-exon	FALSE	canonical	3	7	junction_13	7.19467258528611	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGAATCTATGTGTTG	NA	False	NA	-1	True	AATAAA	-15	NA	106022990	106016555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022339_106022537
ES_00057193	chr8	-	1740	9	NNC	ENSMUSG00000013160.8	novel	1629	8	NA	NA	-73	85696	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202.000270730017	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAACTGAGCCATTTT	NA	False	NA	NA	False	NA	NA	NA	106292752	106165400	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106165437_106251094_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
ES_00057194	chr8	-	844	3	FSM	ENSMUSG00000014846.13	ENSMUST00000176419.2	719	3	50	-175	50	-15	multi-exon	FALSE	canonical	2	5	junction_2	3.5	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTTGTACCAGGATGGA	NA	False	NA	-15	True	AATAAA	-4	NA	106195244	106194139	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106194657_106194787_106194942_106195071
ES_00057195	chr8	-	631	3	FSM	ENSMUSG00000039199.7	ENSMUST00000212538.2	677	3	46	0	14	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCCAGGCAGTGGCAAGG	NA	False	NA	NA	False	NA	NA	NA	106223488	106211632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106212141_106214422_106214499_106223441
ES_00057197	chr8	-	454	1	FSM	ENSMUSG00000080021.6	ENSMUST00000116136.3	454	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACATTCTGTATCCCGAGC	NA	False	NA	NA	False	NA	NA	NA	106387419	106386965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106387000_106387400
ES_00057199	chr8	-	4342	4	FSM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	-10	-3381	-10	-182	multi-exon	FALSE	canonical	2	4	junction_2	11.1455023315337	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACTGGAAAGAAGGCTCAG	NA	False	NA	NA	False	TTTAAA	-4	NA	106485272	106440667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106444283_106449480_106449677_106454619_106454964_106485085
ES_00057201	chr8	-	435	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	0	-9	0	9	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGTCTTTCTTGAGAG	NA	False	NA	2	True	AATAAA	-29	NA	106663657	106662357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
ES_00057202	chr8	-	669	6	ISM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	856	61	77	0	3prime_fragment	FALSE	canonical	2	5	junction_5	109.75499988611	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAAGTGGCCTGAGATG	NA	False	NA	-72	True	NA	NA	NA	106664220	106662431	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125
ES_00057203	chr8	-	3811	24	FSM	ENSMUSG00000017765.18	ENSMUST00000034370.17	3811	24	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_23	38.1304595706627	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTGCTCCGGCTC	NA	False	NA	-4	True	AATAAA	-18	NA	106692729	106670224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692550
ES_00057207	chr8	-	211	1	Intergenic	novelGene_4002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAAACAAAATTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	106898225	106898014	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_106898000_106898200
ES_00057209	chr8	-	342	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	107299982	107299640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107299600_107300000
ES_00057210	chr8	-	236	3	Antisense	novelGene_ENSMUSG00000041949.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGGAGTGTGATGATGC	NA	False	NA	NA	False	NA	NA	NA	107551452	107471102	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_107471129_107529293_107529307_107551255
ES_00057211	chr8	-	237	4	Antisense	novelGene_ENSMUSG00000041949.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	678.822509939086	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGGAGTGTGATGATGC	NA	False	NA	NA	False	NA	NA	NA	107559583	107471102	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_107471129_107529293_107529307_107551255_107551402_107559531
ES_00057213	chr8	-	203	1	Intergenic	novelGene_4004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACAAAACAAAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	107653283	107653080	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_107653100_107653300
ES_00057214	chr8	-	3673	6	NIC	ENSMUSG00000031916.18	novel	2954	6	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	128	junction_5	53.4093624751316	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107783307	107772920	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_107773904_107774692_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ES_00057215	chr8	-	872	4	FSM	ENSMUSG00000031919.7	ENSMUST00000034393.7	871	4	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_1	1.69967317119759	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTGCTGCTGATCAT	NA	False	NA	NA	False	AATAAA	-21	NA	107792276	107788106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107788457_107790308_107790458_107790705_107790833_107792030
ES_00057216	chr8	-	2470	11	FSM	ENSMUSG00000031921.18	ENSMUST00000068388.15	1915	11	-26	-529	5	1	multi-exon	FALSE	canonical	0	0	junction_4	14.7594037819961	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTAGCTGGTTCTTGG	NA	False	NA	1	True	ATTAAA	-18	NA	107823172	107796030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107799353_107799431_107803510_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ES_00057217	chr8	-	669	4	FSM	ENSMUSG00000003848.15	ENSMUST00000163973.8	1427	4	0	758	0	-103	multi-exon	FALSE	canonical	3	454	junction_2	16.5126214353344	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCAGTCTAAACCCT	NA	False	NA	NA	False	AATAAA	-10	NA	108151683	108145084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_108145404_108148113_108148245_108151369_108151503_108151597
ES_00057218	chr8	-	1604	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	0	52271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417822296333	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAGGACTGAGCGGTCCA	NA	False	NA	NA	False	NA	NA	NA	108315090	108254741	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_108254770_108307011_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ES_00057219	chr8	-	2700	2	Intergenic	novelGene_4008	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTCGTGGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	108408862	108404225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_108406853_108408789
ES_00057220	chr8	-	4287	27	NNC	ENSMUSG00000037993.9	novel	4463	27	NA	NA	160	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_8	25.3294563886939	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTATTGCATTTTAAATC	NA	False	NA	-5	True	AATAAA	-16	NA	110292333	110274645	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280792_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288040_110288580_110288769_110289075_110289416_110292122
ES_00057223	chr8	-	7457	4	NNC	ENSMUSG00000069895.5	novel	7526	4	NA	NA	40	-11	intron_retention	FALSE	canonical	3	4	junction_1	11.5854314646552	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGCTTTTCCTTTTGGTGT	NA	False	NA	-15	True	NA	NA	NA	110464314	110453097	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_110460378_110461936_110461996_110462091_110462158_110464262
ES_00057224	chr8	-	201	2	Antisense	novelGene_ENSMUSG00000059854.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	124	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAGCCTTTGGTTGCCA	NA	False	NA	NA	False	NA	NA	NA	111218700	111211236	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_111211384_111218646
ES_00057225	chr8	-	1807	8	FSM	ENSMUSG00000031750.16	ENSMUST00000150680.2	1796	8	0	-11	0	0	multi-exon	FALSE	canonical	0	0	junction_7	19.7411824801425	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGATGGTGAACCTGGA	5061	False	NA	-12	True	ATTAAA	-27	NA	111532504	111468460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111469081_111469275_111469412_111473449_111473568_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111532365
ES_00057226	chr8	-	1707	7	FSM	ENSMUSG00000031750.16	ENSMUST00000076846.11	1709	7	13	-11	13	0	multi-exon	FALSE	canonical	0	0	junction_6	15.61694236683	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGATGGTGAACCTGGA	5043	False	NA	-12	True	ATTAAA	-27	NA	111532522	111468460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111532365
ES_00057227	chr8	-	3946	24	FSM	ENSMUSG00000033703.10	ENSMUST00000212971.2	3972	24	27	-1	-2	1	multi-exon	FALSE	canonical	1	1	junction_11	26.4236961878319	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTTTTTGCTGGGA	1241	False	NA	1	True	AATAAA	-27	NA	111629093	111609086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616471_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
ES_00057229	chr8	-	2145	15	FSM	ENSMUSG00000003316.15	ENSMUST00000168741.8	2145	15	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	127.655567358228	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAGGAAAAAGTGT	5772	False	NA	NA	False	NA	NA	NA	111904408	111884156	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_111884694_111886430_111886538_111887252_111887443_111888057_111888166_111888998_111889101_111889269_111889413_111890402_111890527_111892188_111892327_111895292_111895386_111896119_111896238_111897861_111897951_111899046_111899161_111899833_111899897_111900865_111900953_111904276
ES_00057230	chr8	-	4896	27	FSM	ENSMUSG00000031959.16	ENSMUST00000034437.8	4896	27	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	16.2917647181985	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTTGTGTGTGTAAAT	NA	False	NA	NA	False	GATAAA	-25	NA	112248702	112175650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112199261_112199319_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ES_00057232	chr8	-	322	2	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	19	-20234	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTAACAGGATTCTGGGA	NA	False	NA	-4	True	AATAAA	-20	NA	112718915	112718418	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_112718638_112718812
ES_00057236	chr8	-	876	4	FSM	ENSMUSG00000014633.16	ENSMUST00000131616.8	876	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	157.584545209512	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	117648161	117616017	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_117616599_117620826_117620899_117637822_117637974_117648089
ES_00057238	chr8	-	2119	11	NNC	ENSMUSG00000034416.19	novel	7389	43	NA	NA	-363	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	9.49947366963033	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCATGTTCTTATTTAT	NA	False	NA	NA	False	TATAAA	-21	NA	117755945	117736059	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017_117755235_117755895
ES_00057242	chr8	-	1573	1	FSM	ENSMUSG00000031843.3	ENSMUST00000213070.2	1573	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118519956	118518383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_118518400_118520000
ES_00057244	chr8	-	4344	24	FSM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	0	-8	0	8	multi-exon	FALSE	canonical	3	10	junction_23	140.895341173728	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATGTGTCGTGCCCCAGC	8149	False	NA	1	True	AATAAA	-22	NA	120285466	120234886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120276296_120276446_120285384
ES_00057246	chr8	-	3211	5	NIC	ENSMUSG00000034189.6	novel	3141	5	NA	NA	576	11	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	60.0557033095109	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGAGGGTCTTTTTCTTTC	NA	False	NA	1	True	AATAAA	-30	NA	120301338	120288716	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301187
ES_00057247	chr8	-	3320	15	FSM	ENSMUSG00000031832.16	ENSMUST00000147964.8	3309	15	-11	0	-11	0	multi-exon	FALSE	canonical	2	19	junction_9	11.7969643276115	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	1053	False	NA	-2	True	NA	NA	NA	120331972	120324713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329496_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
ES_00057254	chr8	-	1863	7	FSM	ENSMUSG00000031819.14	ENSMUST00000180417.8	1863	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	606.070792528031	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTTTTGTAATCCTGAG	NA	False	NA	-40	True	ATTAAA	-11	NA	121395312	121384589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121386697_121386927_121387232_121387410_121387522_121387600_121394495
ES_00057256	chr8	-	2417	8	FSM	ENSMUSG00000031816.16	ENSMUST00000128052.8	2415	8	0	-2	0	0	multi-exon	FALSE	canonical	2	6	junction_7	31.0733168555943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	False	NA	-7	True	NA	NA	NA	121835034	121824291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608_121833713_121834932
ES_00057257	chr8	-	1370	10	FSM	ENSMUSG00000031816.16	ENSMUST00000139782.8	1366	10	0	-4	0	0	multi-exon	FALSE	canonical	2	6	junction_9	24.8282992660481	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	False	NA	-7	True	NA	NA	NA	121835049	121824291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834932
ES_00057260	chr8	-	683	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	27.9776696670756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTCTGCGGCTTACAA	NA	False	NA	NA	False	AATAAA	-27	NA	121835051	121830593	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_121830920_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ES_00057270	chr8	-	1880	2	FSM	ENSMUSG00000035569.18	ENSMUST00000212050.2	1874	2	0	-6	0	6	multi-exon	FALSE	canonical	3	242	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTTGTTTTCTCTAT	NA	False	NA	1	True	AATAAA	-20	NA	123626519	123623752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123625456_123626342
ES_00057272	chr8	-	3122	14	FSM	ENSMUSG00000001062.19	ENSMUST00000149490.8	3233	14	108	3	-5	0	multi-exon	FALSE	canonical	3	11	junction_3	5.475064507469	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCCATGTGACTTGTTC	2283	False	NA	NA	False	AATAAA	-15	NA	123980853	123969097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_123969929_123970426_123970532_123971852_123971950_123972245_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123975416_123975500_123975613_123977416_123977580_123977665_123977759_123979343_123979420_123980726
ES_00057275	chr8	-	2886	14	FSM	ENSMUSG00000039509.9	ENSMUST00000212133.2	2939	14	0	53	0	-53	multi-exon	FALSE	canonical	3	328	junction_2	25.7454540136092	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGATCTTTGAGTTCAA	NA	False	NA	NA	False	NA	NA	NA	124675994	124646627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
ES_00057276	chr8	-	2916	5	NNC	ENSMUSG00000038697.16	novel	2912	5	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_1	242.411839644849	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGGCATCTTATTTAT	4094	False	NA	43	True	ATTAAA	-22	NA	124747747	124723049	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_124724843_124729715_124730441_124734929_124735035_124736427_124736573_124747599
ES_00057277	chr8	-	3315	23	NIC	ENSMUSG00000037300.20	novel	3301	23	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	143	junction_17	103.32721034023	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	-3	True	ATTAAA	-21	NA	125448722	125398065	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ES_00057286	chr8	-	1509	10	FSM	ENSMUSG00000033931.10	ENSMUST00000212618.2	1509	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	55.208694967369	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697820	127675775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ES_00057288	chr8	+	391	1	Intergenic	novelGene_3848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTTGATATGGGATCCA	NA	False	NA	NA	False	NA	NA	NA	4048662	4049053	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_4048700_4049100
ES_00057289	chr8	+	503	1	Intergenic	novelGene_3849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATGTATCGTCAGGTG	4263	False	NA	NA	False	NA	NA	NA	4138984	4139487	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_4139000_4139500
ES_00057290	chr8	+	343	1	Intergenic	novelGene_3857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTTATTAACTAGAAATA	NA	False	NA	NA	False	NA	NA	NA	5271177	5271520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5271200_5271500
ES_00057291	chr8	+	347	1	Intergenic	novelGene_3858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTTCTTACATAATGT	NA	False	NA	NA	False	NA	NA	NA	5271736	5272083	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5271700_5272100
ES_00057292	chr8	+	203	1	Intergenic	novelGene_3862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTTCTTAAAGTTGTT	NA	False	NA	NA	False	TTTAAA	-4	NA	8797433	8797636	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_8797400_8797600
ES_00057293	chr8	+	227	1	Intergenic	novelGene_3864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATGGCCTCTGCATCAG	NA	False	NA	NA	False	NA	NA	NA	11516786	11517013	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_11516800_11517000
ES_00057294	chr8	+	212	1	Intergenic	novelGene_3869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCATTCTTAATGCAGA	2202	False	NA	NA	False	NA	NA	NA	13203160	13203372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_13203200_13203400
ES_00057295	chr8	+	202	1	Intergenic	novelGene_3871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTCTGGGACCAGCTTA	NA	False	NA	NA	False	NA	NA	NA	13270954	13271156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_13271000_13271200
ES_00057296	chr8	+	221	1	Intergenic	novelGene_3873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTTCTTTTCTTCTGTC	9820	False	NA	NA	False	NA	NA	NA	13801968	13802189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_13802000_13802200
ES_00057297	chr8	+	213	1	Intergenic	novelGene_3881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTCAGGAGATGGCCAG	NA	False	NA	NA	False	NA	NA	NA	18532229	18532442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_18532200_18532400
ES_00057298	chr8	+	222	1	Intergenic	novelGene_3882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTAGCCCTGGCTGTCC	5920	False	NA	NA	False	NA	NA	NA	18888155	18888377	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_18888200_18888400
ES_00057300	chr8	+	242	1	Intergenic	novelGene_3901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCTCGCCATAAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	23361581	23361823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_23361600_23361800
ES_00057302	chr8	+	216	1	Intergenic	novelGene_3910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	27746743	27746959	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_27746700_27747000
ES_00057303	chr8	+	222	1	Intergenic	novelGene_3923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTCCTCTTATTGT	NA	False	NA	NA	False	NA	NA	NA	41627136	41627358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_41627100_41627400
ES_00057304	chr8	+	201	1	Intergenic	novelGene_3924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATTTCTTACATGGAA	NA	False	NA	NA	False	NA	NA	NA	43545350	43545551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_43545400_43545600
ES_00057305	chr8	+	219	1	Intergenic	novelGene_3940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATGACTAGCAT	NA	False	NA	NA	False	AATAAA	-17	NA	61356550	61356769	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_61356600_61356800
ES_00057306	chr8	+	202	1	Intergenic	novelGene_3941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCGAATTTCAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	61530675	61530877	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_61530700_61530900
ES_00057307	chr8	+	309	1	Intergenic	novelGene_3948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTGTACAAAGGACCAT	NA	False	NA	NA	False	NA	NA	NA	70034597	70034906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_70034600_70034900
ES_00057308	chr8	+	216	1	Intergenic	novelGene_3950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTGTAATGAGATCTGAC	NA	False	NA	-68	True	NA	NA	NA	70631942	70632158	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_70631900_70632200
ES_00057309	chr8	+	248	1	Intergenic	novelGene_3952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTCAAAACTTTTGAGT	NA	False	NA	NA	False	AATAGA	-11	NA	70969772	70970020	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_70969800_70970000
ES_00057310	chr8	+	210	1	Intergenic	novelGene_3953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTCTCTC	5732	False	NA	NA	False	NA	NA	NA	71032341	71032551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_71032300_71032600
ES_00057312	chr8	+	205	1	Intergenic	novelGene_3957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAACCAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	71981952	71982157	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_71982000_71982200
ES_00057314	chr8	+	276	1	Intergenic	novelGene_3958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGAGTACACCATGTTT	NA	False	NA	NA	False	AATAAA	-31	NA	72789537	72789813	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_72789500_72789800
ES_00057315	chr8	+	746	1	Intergenic	novelGene_3967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCACCTGCAGTGGGCA	NA	False	NA	NA	False	NA	NA	NA	80406115	80406861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_80406100_80406900
ES_00057316	chr8	+	215	1	Intergenic	novelGene_3968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACTAAAACTATCTGGCC	NA	False	NA	NA	False	NA	NA	NA	81475169	81475384	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_81475200_81475400
ES_00057318	chr8	+	245	1	Intergenic	novelGene_3973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTTTCAAGTCAATGAAA	1710	False	NA	NA	False	NA	NA	NA	84470384	84470629	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_84470400_84470600
ES_00057319	chr8	+	200	1	Intergenic	novelGene_3988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAATTCTGGGTTGAAG	466	False	NA	NA	False	NA	NA	NA	94924163	94924363	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_94924200_94924400
ES_00057320	chr8	+	253	1	Intergenic	novelGene_3993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAGAAACAATTTGGCT	NA	False	NA	NA	False	NA	NA	NA	96325204	96325457	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_96325200_96325500
ES_00057321	chr8	+	212	1	Intergenic	novelGene_3998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCTGGGGGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	105098859	105099071	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_105098900_105099100
ES_00057322	chr8	+	219	1	Intergenic	novelGene_3999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGTGGTTGCTGGGAT	7020	False	NA	NA	False	NA	NA	NA	105939666	105939885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_105939700_105939900
ES_00057323	chr8	+	203	1	Intergenic	novelGene_4000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGAGCAAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	106523612	106523815	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_106523600_106523800
ES_00057325	chr8	+	501	1	Intergenic	novelGene_4006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATGATCTCAGACTCCT	NA	False	NA	NA	False	NA	NA	NA	107811234	107811735	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_107811200_107811700
ES_00057326	chr8	+	217	1	Intergenic	novelGene_4010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGTAAAAGCCAGGCTG	NA	False	NA	NA	False	NA	NA	NA	111328500	111328717	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_111328500_111328700
ES_00057338	chr8	+	5277	12	FSM	ENSMUSG00000004568.14	ENSMUST00000156085.8	5277	12	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_3	22.0540283233983	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAGGCTGAAACAGACC	1278	False	NA	23	True	AATAAA	-13	NA	3487010	3506600	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037
ES_00057340	chr8	+	5610	33	NNC	ENSMUSG00000004565.16	novel	4438	34	NA	NA	-3	32859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	62.4582282284528	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAATCAAGGGCGCATT	NA	False	NA	NA	False	NA	NA	NA	3566859	3627126	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953_3594265_3625926
ES_00057341	chr8	+	715	1	Intergenic	novelGene_3846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGTTCAAATCCCAGCAA	8439	False	NA	NA	False	NA	NA	NA	3596232	3596947	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_3596200_3596900
ES_00057342	chr8	+	450	2	Genic_Genomic	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-7073	-600	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTCGGTGACTGCGGAGCT	7531	False	NA	NA	False	NA	NA	NA	3610916	3634176	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_+_3610951_3633760
ES_00057343	chr8	+	615	3	NNC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	1.5	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTTATTTATTTATC	NA	False	NA	13	True	ATTAAA	-41	NA	3617992	3628586	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3618097_3627840_3628046_3628280
ES_00057344	chr8	+	729	5	ISM	ENSMUSG00000065952.14	ENSMUST00000136592.2	1621	6	1	4251	1	1928	5prime_fragment	FALSE	canonical	3	9	junction_4	8.46684711093805	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCGATATTCTCACAT	NA	False	NA	NA	False	ATTAAA	-1	NA	3617998	3630525	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_3618097_3623120_3623222_3627840_3628046_3629722_3629922_3630399
ES_00057345	chr8	+	4088	17	NNC	ENSMUSG00000044433.17	novel	4450	17	NA	NA	-190	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	40.7883255356235	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTACGTCTCGTGTT	6464	False	NA	53	True	NA	NA	NA	3637603	3659075	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653656_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ES_00057351	chr8	+	210	1	FSM	ENSMUSG00000109277.2	ENSMUST00000208847.2	525	1	-83	398	-83	-398	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGGCCTCTGTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	3722346	3722556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_3722300_3722600
ES_00057352	chr8	+	4050	1	FSM	ENSMUSG00000097657.3	ENSMUST00000181162.3	2884	1	-135	-1031	-135	1031	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACCCAGCTGTAGGCGC	NA	False	NA	NA	False	NA	NA	NA	4044490	4048540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4044500_4048500
ES_00057353	chr8	+	1592	5	NIC	ENSMUSG00000089736.3	novel	1075	7	NA	NA	0	0	intron_retention	FALSE	canonical	2	3	junction_3	4.38035386698381	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGTGGAGTCAATATG	NA	False	NA	NA	False	AATAAA	-16	NA	4298632	4301423	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_4299747_4300266_4300382_4300466_4300626_4300848_4300922_4301292
ES_00057355	chr8	+	2477	1	FSM	ENSMUSG00000023235.15	ENSMUST00000207839.2	2461	1	-441	425	-418	-425	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGACCCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	4374791	4377268	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_4374800_4377300
ES_00057357	chr8	+	298	1	FSM	ENSMUSG00000109117.2	ENSMUST00000208349.2	1131	1	-130	963	-130	-963	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTTCGAAAGGAACGTCGA	NA	False	NA	NA	False	NA	NA	NA	8761353	8761651	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_8761400_8761700
ES_00057358	chr8	+	1125	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178721.2	1108	9	-17	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	91.7509366437204	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547566	11563287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11562894
ES_00057359	chr8	+	684	5	FSM	ENSMUSG00000031505.12	ENSMUST00000178364.8	684	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	55.3940430010304	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCATGGAGGTCATTAAA	NA	False	NA	NA	False	NA	NA	NA	11547592	11557070	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706
ES_00057361	chr8	+	5032	29	NIC	ENSMUSG00000031442.22	novel	3215	28	NA	NA	-11	0	intron_retention	FALSE	canonical	2	7	junction_1	7.04604028327041	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCATTTCTGGTTATGT	NA	False	NA	15	True	AATAAA	-22	NA	12976620	13070505	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_12976734_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ES_00057364	chr8	+	1062	1	FSM	ENSMUSG00000099338.2	ENSMUST00000190461.2	1039	1	-33	10	-1	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTACCAAAGCCTTGGTGC	NA	False	NA	NA	False	NA	NA	NA	13250718	13251780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13250700_13251800
ES_00057365	chr8	+	2811	12	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_4	454.39852170636	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2173	False	NA	88	True	AATAAA	-18	NA	13388820	13428442	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_13389147_13389664_13389740_13415088_13415196_13419458_13419581_13420171_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ES_00057367	chr8	+	3977	2	FSM	ENSMUSG00000047710.9	ENSMUST00000128557.3	3977	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919703	13931639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_13919839_13927797
ES_00057369	chr8	+	390	3	FSM	ENSMUSG00000031461.5	ENSMUST00000135393.2	645	3	255	0	255	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCAGCAGTCCTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	15156279	15158840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_15156468_15158362_15158490_15158765
ES_00057370	chr8	+	505	3	Intergenic	novelGene_3880	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	0.5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTTTTTATTCACCA	NA	False	NA	NA	False	AATAAA	-15	NA	15899012	15915831	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_15899117_15913082_15913280_15915627
ES_00057371	chr8	+	2369	2	Intergenic	novelGene_3886	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCTCTGCCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	19754734	19757323	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_19756785_19757004
ES_00057372	chr8	+	5668	7	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	0	-1840	intron_retention	FALSE	non_canonical	0	0	junction_5	606.960734589424	47	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTCAGGAGGGATGGGGG	NA	False	NA	NA	False	NA	NA	NA	19834761	20053658	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20045923_20045952_20045999_20052877
ES_00057374	chr8	+	1405	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	2	390	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	367.009110922331	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAAGACCCACAACGTGA	NA	False	NA	NA	False	NA	NA	NA	20016467	20046278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20016689_20030550_20030924_20035860_20036156_20045732_20045923_20045952
ES_00057375	chr8	+	7355	1	Intergenic	novelGene_3890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTTTCCGTGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	20119649	20127004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_20119600_20127000
ES_00057376	chr8	+	1241	5	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-93	-3520	at_least_one_novel_splicesite	FALSE	canonical	3	474	junction_1	337.871647227168	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	7095	False	NA	NA	False	ATTAAA	-25	NA	20143754	20169474	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20143957_20157802_20158009_20163109_20163409_20167037_20167158_20169060
ES_00057379	chr8	+	3362	6	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21063	9477	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	12.4354332453679	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAAGTTTCTTCAAC	5326	False	NA	14	True	NA	NA	NA	20555636	20593814	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008_20588273_20590632_20590713_20591573
ES_00057380	chr8	+	3762	2	Genic_Genomic	ENSMUSG00000096401.3	novel	930	5	NA	NA	-130372	1193	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCACAAGGTAGTACAAAGT	1594	False	NA	NA	False	NA	NA	NA	20581730	20728459	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_+_20582117_20725083
ES_00057381	chr8	+	216	1	Intergenic	novelGene_3893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTCTACCAATTAAAAGTT	3675	False	NA	NA	False	NA	NA	NA	20583811	20584027	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_20583800_20584000
ES_00057383	chr8	+	241	2	Antisense	novelGene_ENSMUSG00000110574.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGTAAGGTTTTTATAG	NA	False	NA	NA	False	NA	NA	NA	21079546	21162217	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_21079574_21162003
ES_00057384	chr8	+	6468	5	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-12010	-571	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	221.500987582448	79	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTTAAGCAGGGGGTAA	NA	False	NA	NA	False	AATAAA	-16	NA	21095602	21122216	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_21097926_21107448_21107655_21112754_21113054_21116684_21116805_21118696
ES_00057385	chr8	+	410	2	FSM	ENSMUSG00000074446.4	ENSMUST00000098899.4	411	2	0	1	0	-1	multi-exon	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTGTGTTCACATTC	NA	False	NA	NA	False	AATAAA	-15	NA	21545062	21546031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_21545269_21545827
ES_00057386	chr8	+	227	1	FSM	ENSMUSG00000085898.2	ENSMUST00000130905.2	481	1	-27	281	-27	-281	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCAGCATTCCATGGGCA	NA	False	NA	NA	False	NA	NA	NA	21581354	21581581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_21581400_21581600
ES_00057387	chr8	+	223	2	Intergenic	novelGene_3896	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATCTTCAAACCAAGATC	NA	False	NA	NA	False	NA	NA	NA	22006639	22012809	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_22006736_22012682
ES_00057388	chr8	+	396	1	Intergenic	novelGene_3900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTTAAAAAA	3916	False	NA	NA	False	NA	NA	NA	23136057	23136453	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_23136100_23136500
ES_00057389	chr8	+	939	1	FSM	ENSMUSG00000110256.2	ENSMUST00000210217.2	2275	1	-164	1500	-164	-1500	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTCGCTCCACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	23746486	23747425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_23746500_23747400
ES_00057390	chr8	+	1744	1	FSM	ENSMUSG00000109237.2	ENSMUST00000208727.2	1653	1	-132	41	-132	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTGTAGTTAATAAACTG	NA	False	NA	NA	False	NA	NA	NA	24996313	24998057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_24996300_24998100
ES_00057391	chr8	+	1416	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	3	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ES_00057392	chr8	+	1287	6	FSM	ENSMUSG00000031570.18	ENSMUST00000138548.2	1287	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	27.7877670927334	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210482	26214914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_26210511_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ES_00057395	chr8	+	1977	4	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	26	39581	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	6923.95595017761	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTCCCAGGGGTCCATG	NA	False	NA	NA	False	ATTAAA	-30	NA	27750382	27806283	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_27750579_27763350_27763531_27765107_27766659_27806233
ES_00057397	chr8	+	204	1	Intergenic	novelGene_3911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27821495	27821699	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_27821500_27821700
ES_00057400	chr8	+	1790	2	FSM	ENSMUSG00000049184.7	ENSMUST00000078058.5	1795	2	5	0	5	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAGTTTGGATTCTTATT	NA	False	NA	22	True	AATAAA	-16	NA	33876357	33907495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_33877237_33906584
ES_00057401	chr8	+	1730	1	Intergenic	novelGene_3915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATCTCAGATACTCATT	NA	False	NA	NA	False	AATAAA	-43	NA	33879965	33881695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_33880000_33881700
ES_00057402	chr8	+	2463	3	NNC	ENSMUSG00000071113.5	novel	1836	3	NA	NA	3773	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.5	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGCCGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	34585956	34592337	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_34586766_34587223_34587449_34590908
ES_00057403	chr8	+	472	1	FSM	ENSMUSG00000109580.2	ENSMUST00000209683.2	458	1	-14	0	-14	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGGCCTTTGCTGTT	NA	False	NA	-33	True	AAGAAA	-4	NA	34974346	34974818	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_34974300_34974800
ES_00057404	chr8	+	1957	1	FSM	ENSMUSG00000074384.5	ENSMUST00000098825.5	1930	1	-34	7	-34	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTAAGCTAGTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	37460723	37462680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_37460700_37462700
ES_00057405	chr8	+	3267	14	NIC	ENSMUSG00000039478.16	novel	2219	15	NA	NA	555	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	2.06978831493442	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGCAGCCGAGTTATAC	8817	False	NA	11	True	AATAAA	-15	NA	40761053	40839345	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_40761452_40788850_40789005_40793338_40793371_40801980_40802060_40805076_40805125_40807343_40807427_40809896_40809969_40819189_40819286_40828577_40828679_40829136_40829309_40831872_40831982_40833712_40833871_40835149_40835219_40837649
ES_00057406	chr8	+	6109	36	NIC	ENSMUSG00000031592.11	novel	6624	38	NA	NA	0	-1172	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	44.5063994481326	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAGTTACCAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	41692788	41783957	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
ES_00057407	chr8	+	6480	37	NIC	ENSMUSG00000031592.11	novel	6624	38	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_22	46.1350674047892	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	8	True	AATAAA	-20	NA	41692788	41785381	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ES_00057408	chr8	+	6588	38	NIC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	42.5841838011169	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	8	True	AATAAA	-20	NA	41692788	41785381	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ES_00057409	chr8	+	9421	37	ISM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	5	-1740	0	1740	intron_retention	FALSE	canonical	3	55	junction_5	37.9212960136916	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCTGAATTGTATTTTT	NA	False	NA	23	True	AATAAA	-15	NA	41692814	41787121	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
ES_00057410	chr8	+	1395	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
ES_00057412	chr8	+	200	2	Antisense	novelGene_ENSMUSG00000079057.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	90	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGATTTACTGTATTTATT	NA	False	NA	NA	False	NA	NA	NA	45686198	45788005	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_45686251_45787857
ES_00057413	chr8	+	4792	6	NIC	ENSMUSG00000031631.16	novel	2043	6	NA	NA	-42	0	intron_retention	FALSE	canonical	3	9	junction_1	20.9990475974507	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTTGATTCTGTTTT	NA	False	NA	14	True	AATAAA	-15	NA	46616645	46648623	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_46616787_46617798_46617934_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ES_00057414	chr8	+	2899	7	NNC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	-4	0	intron_retention	FALSE	non_canonical	0	0	junction_6	82.951793229562	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTATATGTTTTGT	NA	False	NA	7	True	AATAAA	-17	NA	47986716	48005860	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003726
ES_00057415	chr8	+	563	1	FSM	ENSMUSG00000097706.2	ENSMUST00000180928.2	1756	1	259	934	259	-934	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCGACTTCAGCGGCCAG	NA	False	NA	NA	False	NA	NA	NA	48166559	48167122	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_48166600_48167100
ES_00057416	chr8	+	387	2	Intergenic	novelGene_3933	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTTTCTGAGCTCTTTG	NA	False	NA	NA	False	NA	NA	NA	50036762	50040345	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_50036947_50040142
ES_00057417	chr8	+	475	1	FSM	ENSMUSG00000110318.2	ENSMUST00000209582.2	473	1	-2	0	-2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGAGGCCTCTGTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	57013948	57014423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_57013900_57014400
ES_00057418	chr8	+	305	2	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	12	-5	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCACACTCCTGCTTCT	NA	False	NA	4	True	NA	NA	NA	57958860	57959760	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_57958967_57959561
ES_00057419	chr8	+	531	3	FSM	ENSMUSG00000038005.16	ENSMUST00000146863.2	531	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	396.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343451	61360609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_61343571_61358581_61358755_61360370
ES_00057421	chr8	+	277	3	Antisense	novelGene_ENSMUSG00000058056.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACCCGAGATTATTCGGC	NA	False	NA	NA	False	NA	NA	NA	62191875	62195317	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_+_62191960_62193705_62193775_62195193
ES_00057422	chr8	+	1193	6	FSM	ENSMUSG00000025521.16	ENSMUST00000209852.2	1193	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_5	221.877804207631	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTGGTGCACACCTTTA	NA	False	NA	NA	False	NA	NA	NA	65399870	65419372	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65418944
ES_00057423	chr8	+	916	5	FSM	ENSMUSG00000025521.16	ENSMUST00000079896.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	253.637536654179	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAATGTTTTGTATGTTGT	NA	False	NA	23	True	TATAAA	-15	NA	65399905	65421683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65418190_65418294_65421362
ES_00057424	chr8	+	231	2	Intergenic	novelGene_3943	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAGTTTTTATTTTGG	NA	False	NA	NA	False	NA	NA	NA	66208871	66227220	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_66208905_66227022
ES_00057425	chr8	+	1408	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	-12	0	-12	0	multi-exon	FALSE	canonical	2	5	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCAAAGTGGTATATTGA	NA	False	NA	NA	False	AATAAA	-25	NA	67947497	67955236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_67947555_67953885
ES_00057426	chr8	+	3176	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	0	-771	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	169.630210471184	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTCACATAGTAGTTTA	NA	False	NA	NA	False	AATAAA	-11	NA	69246625	69281289	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928_69280796_69281002
ES_00057427	chr8	+	1448	1	ISM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	24996	0	14743	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCATCATTTTGTATC	NA	False	NA	13	True	AATAAA	-24	NA	69358138	69359586	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_69358100_69359600
ES_00057428	chr8	+	1301	3	NNC	ENSMUSG00000079038.4	novel	508	4	NA	NA	16	858	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	0.5	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAAAACATCATCCATCA	7177	False	NA	NA	False	NA	NA	NA	69723761	69767717	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_69723866_69743913_69743975_69766581
ES_00057429	chr8	+	1167	1	Intergenic	novelGene_3947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTTGCACATACACAC	NA	False	NA	NA	False	NA	NA	NA	70014617	70015784	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_70014600_70015800
ES_00057431	chr8	+	838	5	FSM	ENSMUSG00000031860.18	ENSMUST00000132899.8	823	5	-15	0	10	0	multi-exon	FALSE	canonical	0	0	junction_2	15.6744218394172	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2229	False	NA	5	True	ATTAAA	-18	NA	70285296	70324942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70285502_70311729_70311804_70322678_70322833_70323227_70323335_70324644
ES_00057432	chr8	+	1404	8	FSM	ENSMUSG00000031860.18	ENSMUST00000081503.13	1560	8	156	0	10	0	multi-exon	FALSE	canonical	1	2	junction_2	14.9543523116591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2229	False	NA	5	True	ATTAAA	-18	NA	70285296	70324942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70285502_70311729_70311804_70316961_70317201_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
ES_00057433	chr8	+	4187	8	FSM	ENSMUSG00000011306.8	ENSMUST00000211808.2	2963	8	-261	-963	-40	963	multi-exon	FALSE	canonical	3	384	junction_4	42.1644012728021	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCAACAAAAGCAACTTGT	2117	False	NA	NA	False	NA	NA	NA	70495422	70520524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486
ES_00057434	chr8	+	2538	15	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	133.476685268267	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2157	False	NA	NA	False	GATAAA	-14	NA	70495462	70524997	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_70495528_70495670_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ES_00057435	chr8	+	1436	10	FSM	ENSMUSG00000036151.16	ENSMUST00000110160.9	1446	10	0	10	0	4	multi-exon	FALSE	canonical	0	0	junction_1	1.28620410031003	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCACCACCTAAGTGTTTC	NA	False	NA	NA	False	AATAAA	-19	NA	70525573	70532706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70525740_70526927_70527032_70527981_70528080_70528149_70528254_70528650_70528734_70530039_70530165_70530530_70530633_70530959_70531053_70531454_70531575_70532265
ES_00057436	chr8	+	1507	3	FSM	ENSMUSG00000071078.7	ENSMUST00000212851.2	1507	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	269.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCCATTTGTGGTAC	461	False	NA	19	True	NA	NA	NA	70583996	70586399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70584250_70584567_70584659_70585236
ES_00057437	chr8	+	1256	8	FSM	ENSMUSG00000079033.11	ENSMUST00000110141.9	1253	8	-3	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	84.1783820229398	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8589	False	NA	4	True	NA	NA	NA	70605427	70620137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619468_70619557_70619715
ES_00057441	chr8	+	663	4	NNC	ENSMUSG00000007888.16	novel	1644	9	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	3.85861230093008	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCCAGTGTGTTTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	70953757	70956726	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_70953929_70955954_70956143_70956241_70956290_70956470
ES_00057442	chr8	+	1882	8	NIC	ENSMUSG00000019428.17	novel	1799	9	NA	NA	2	0	intron_retention	FALSE	canonical	3	268	junction_4	416.823312051267	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980660	70987976	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132
ES_00057443	chr8	+	2216	1	FSM	ENSMUSG00000019261.4	ENSMUST00000212823.2	1911	1	21	-326	3	326	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACACAGAGAAACCCTGT	NA	False	NA	NA	False	NA	NA	NA	71358908	71361124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71358900_71361100
ES_00057444	chr8	+	4396	4	FSM	ENSMUSG00000019261.4	ENSMUST00000212143.2	4396	4	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_2	25.1970015852857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTGGTCTTACTGTCT	NA	False	NA	12	True	AATAAA	-12	NA	71364461	71370170	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71364573_71365156_71365298_71365549_71369219_71369695
ES_00057445	chr8	+	505	1	FSM	ENSMUSG00000110664.2	ENSMUST00000212311.2	505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACACAGTCATAAAAGAA	52	False	NA	NA	False	NA	NA	NA	71676592	71677097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_71676600_71677100
ES_00057446	chr8	+	7555	41	NIC	ENSMUSG00000004677.18	novel	7297	40	NA	NA	-99	0	intron_retention	TRUE	canonical	0	0	junction_1	40.7742565842714	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGTGGTCTTGCTGCT	NA	False	NA	12	True	AATAAA	-15	NA	71725258	71813353	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_71725474_71742885_71743781_71767768_71767864_71774425_71774489_71775577_71775678_71775908_71776010_71776507_71776638_71778496_71778587_71780523_71780641_71781189_71781325_71783351_71783474_71785897_71786040_71786270_71786476_71786959_71787039_71789519_71789610_71791550_71791665_71793403_71793444_71795405_71795529_71796256_71796338_71796733_71796845_71798673_71798797_71800257_71800575_71800974_71801546_71801578_71801839_71802778_71802840_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807157_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811259_71811308_71811606_71811738_71811968
ES_00057447	chr8	+	953	8	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	368.982771568383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71819592	71822373	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821493_71821522_71821772_71821948_71822170
ES_00057449	chr8	+	951	7	NIC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	394.930795625428	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71819893	71822373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821493_71821522_71821775_71821948_71822170
ES_00057450	chr8	+	1435	8	ISM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	11	370	11	-44	5prime_fragment	FALSE	canonical	2	5	junction_4	35.7228561145325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCGCTGTCCACTCATG	NA	False	NA	NA	False	NA	NA	NA	71858678	71861757	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565
ES_00057451	chr8	+	2218	8	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	630	135	-1	-135	intron_retention	FALSE	canonical	0	0	junction_4	25.2303671905787	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAATTTTTACTTGTGT	NA	False	NA	4	True	ATTAAA	-6	NA	71941376	71945909	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720
ES_00057453	chr8	+	205	1	Intergenic	novelGene_3956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	456	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	71977141	71977346	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_71977100_71977300
ES_00057454	chr8	+	240	1	FSM	ENSMUSG00000110438.2	ENSMUST00000212491.2	407	1	26	141	26	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGCTTTACAGGAGTCA	3604	False	NA	NA	False	AAAACA	-26	NA	72148277	72148517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72148300_72148500
ES_00057455	chr8	+	3053	3	FSM	ENSMUSG00000089857.10	ENSMUST00000110002.8	3152	3	0	99	0	-99	multi-exon	FALSE	canonical	2	4	junction_2	2.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACCCCGTCTTGAAA	NA	False	NA	NA	False	NA	NA	NA	72662451	72670099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72662583_72666965_72667093_72667304
ES_00057457	chr8	+	916	1	FSM	ENSMUSG00000031799.11	ENSMUST00000238752.2	2063	1	-29	1176	0	-1176	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGGTAGAAAGAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	72889072	72889988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_72889100_72890000
ES_00057458	chr8	+	3751	10	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	36.3790062916159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	32	True	ATTAAA	-23	NA	75720325	75758606	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ES_00057459	chr8	+	472	4	FSM	ENSMUSG00000042870.16	ENSMUST00000212564.2	453	4	-19	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	137.950071483208	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATCCACACACCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	75760332	75778664	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_75760456_75774620_75774706_75778135_75778286_75778550
ES_00057460	chr8	+	991	1	FSM	ENSMUSG00000049891.5	ENSMUST00000060640.5	538	1	-9	-444	-9	444	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAATATCTCCATGGTA	NA	False	NA	NA	False	AGTAAA	-33	NA	76125129	76126120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_76125100_76126100
ES_00057461	chr8	+	318	2	Intergenic	novelGene_3965	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGTAGGTAACATGTTAGC	NA	False	NA	NA	False	NA	NA	NA	78866383	78873859	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_78866617_78873774
ES_00057462	chr8	+	659	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	14	0	14	0	multi-exon	FALSE	canonical	2	2	junction_2	1	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGTTGTAAAAAGAAGATT	NA	False	NA	NA	False	NA	NA	NA	79117624	79120403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_79118107_79119699_79119767_79120293
ES_00057463	chr8	+	3176	13	FSM	ENSMUSG00000031684.12	ENSMUST00000211286.2	2752	13	0	-424	0	0	multi-exon	FALSE	canonical	2	5	junction_12	35.903806669117	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79236078	79460632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237_79458779_79459115
ES_00057465	chr8	+	514	3	FSM	ENSMUSG00000097174.3	ENSMUST00000181030.3	3784	3	-39	3309	-39	-143	multi-exon	FALSE	canonical	2	2	junction_2	0.5	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGGCATGATTTCAGCT	NA	False	NA	NA	False	AAGAAA	-39	NA	80021712	80032281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_80022137_80023240_80023281_80032231
ES_00057466	chr8	+	6878	15	NNC	ENSMUSG00000036990.14	novel	613	7	NA	NA	-2770	31	at_least_one_novel_splicesite	FALSE	non_canonical	1	3	junction_1	76.3445466023499	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTTTCCATGTATGTTT	NA	False	NA	8	True	AGTAAA	-14	NA	80384942	80404384	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_80385297_80385481_80385593_80385812_80385931_80386026_80386092_80387666_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
ES_00057467	chr8	+	219	1	FSM	ENSMUSG00000109584.2	ENSMUST00000210546.2	980	1	725	36	725	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTCTGGGGAATCGAGAA	NA	False	NA	NA	False	NA	NA	NA	81498044	81498263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_81498000_81498300
ES_00057468	chr8	+	537	4	Intergenic	novelGene_3970	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	7	junction_2	4.24264068711928	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTGTGTCTGTGT	1274	False	NA	NA	False	NA	NA	NA	81668463	81684741	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_81668523_81668661_81668823_81677185_81677329_81684567
ES_00057473	chr8	+	201	2	Intergenic	novelGene_3974	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	29	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTGGTTTCCAAATAAA	5814	False	NA	NA	False	NA	NA	NA	84838090	84838482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_84838148_84838338
ES_00057474	chr8	+	2259	3	FSM	ENSMUSG00000012889.9	ENSMUST00000147175.2	3011	3	752	0	752	0	multi-exon	FALSE	canonical	2	2	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCACAGGGGACTCAGT	7955	False	NA	NA	False	AATAAA	-15	NA	84855198	84859145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_84855356_84855892_84856009_84857159
ES_00057476	chr8	+	2269	10	NIC	ENSMUSG00000034656.19	novel	549	5	NA	NA	13559	2	combination_of_known_splicesites	FALSE	canonical	3	12	junction_3	7.54247233265651	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTTCTGAACTAGAGTGG	NA	False	NA	10	True	NA	NA	NA	85342160	85366877	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85342300_85344420_85344527_85356231_85356340_85356453_85356555_85359835_85359946_85360041_85360181_85360278_85360393_85363140_85363328_85365240_85365495_85365866
ES_00057477	chr8	+	1056	2	FSM	ENSMUSG00000034656.19	ENSMUST00000130507.2	249	2	7	-814	7	2	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTTCTGAACTAGAGTGG	NA	False	NA	10	True	NA	NA	NA	85365626	85366877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85365672_85365866
ES_00057478	chr8	+	3654	15	FSM	ENSMUSG00000001909.17	ENSMUST00000137953.8	3647	15	-11	4	0	-4	multi-exon	FALSE	canonical	3	116	junction_1	120.800814296485	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAAGCCATCTGCATGGG	NA	False	NA	32	True	AATAAA	-32	NA	85415900	85426433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00057479	chr8	+	2132	17	NIC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	163.562249235574	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415918	85426415	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85415979_85416260_85416538_85417145_85417202_85417401_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ES_00057480	chr8	+	638	3	FSM	ENSMUSG00000001909.17	ENSMUST00000136423.3	638	3	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	3448	False	NA	14	True	AATAAA	-14	NA	85425026	85426415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_85425099_85425767_85425888_85425969
ES_00057481	chr8	+	821	6	NNC	ENSMUSG00000003824.13	novel	1686	5	NA	NA	-16	43044	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	645.007720884022	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACACACACACCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	85598805	85657894	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763_85614023_85657865
ES_00057482	chr8	+	665	5	NNC	ENSMUSG00000003824.13	novel	1686	5	NA	NA	-16	45016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	731.438437259077	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGGGAGGGGGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	85598805	85659866	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763_85614023_85659839
ES_00057483	chr8	+	4922	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-102	0	combination_of_known_splicesites	FALSE	canonical	3	102	junction_20	83.055035301232	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763441	85784209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00057484	chr8	+	4904	25	NIC	ENSMUSG00000031691.15	novel	4884	25	NA	NA	18	-2	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	92.5778951298131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACACTTGGTGTCTCAT	NA	False	NA	12	True	AGTAAA	-14	NA	85763814	85784207	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_85763921_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ES_00057486	chr8	+	4679	33	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	2	11	junction_3	30.1345290945453	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATCAGAAGCAATGTCTG	NA	False	NA	2	True	NA	NA	NA	86567619	86787264	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_86567733_86569632_86569742_86575302_86575361_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ES_00057487	chr8	+	4574	32	NNC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	23.8918391755081	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATCAGAAGCAATGTCTG	NA	False	NA	2	True	NA	NA	NA	86567644	86787264	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_86567733_86569654_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ES_00057489	chr8	+	2353	4	FSM	ENSMUSG00000055994.16	ENSMUST00000124091.2	2602	4	0	249	0	-249	multi-exon	FALSE	canonical	2	2	junction_2	1.24721912892465	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGGAGATGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	89374011	89392079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_89374038_89379492_89379960_89387166_89387273_89390325
ES_00057490	chr8	+	463	1	Intergenic	novelGene_3987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAAACACATTTTCCTT	NA	False	NA	NA	False	AATAAA	-2	NA	89872644	89873107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_89872600_89873100
ES_00057491	chr8	+	336	1	FSM	ENSMUSG00000109812.2	ENSMUST00000210665.2	1896	1	-208	1768	-208	-1768	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTGGTTTTTATATTCA	NA	False	NA	NA	False	AATAAA	-5	NA	91603000	91603336	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_91603000_91603300
ES_00057492	chr8	+	11501	39	NNC	ENSMUSG00000056608.15	novel	9419	38	NA	NA	4275	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	7.69650242541945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	8450	False	NA	4	True	ATTAAA	-15	NA	91639516	91781136	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_91639662_91658876_91660491_91683010_91683343_91699752_91699865_91703548_91703696_91704107_91704177_91704255_91704312_91705509_91705628_91710089_91710177_91710895_91711034_91712686_91712809_91716057_91716302_91721087_91721265_91723467_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761535_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ES_00057493	chr8	+	402	1	FSM	ENSMUSG00000110325.2	ENSMUST00000209754.2	1812	1	1358	52	1358	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCATTGTTTGGAGCT	2747	False	NA	NA	False	NA	NA	NA	92361064	92361466	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_92361100_92361500
ES_00057494	chr8	+	444	2	FSM	ENSMUSG00000099664.2	ENSMUST00000191594.2	450	2	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGACGTTTCCTGGAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	92592504	92599623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_92592529_92599203
ES_00057495	chr8	+	2030	3	FSM	ENSMUSG00000031737.12	ENSMUST00000034184.12	2450	3	330	90	330	-90	multi-exon	FALSE	canonical	0	0	junction_1	0.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACGCTTAGATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	93084706	93087994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_93085058_93086164_93086571_93086721
ES_00057496	chr8	+	504	3	FSM	ENSMUSG00000033192.6	ENSMUST00000130471.2	697	3	0	193	0	-193	multi-exon	FALSE	canonical	2	7	junction_1	0.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTATCAGAAGGGCAAC	NA	False	NA	NA	False	NA	NA	NA	93582107	93596493	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_93582254_93591528_93591669_93596275
ES_00057497	chr8	+	2365	3	NNC	ENSMUSG00000033009.16	novel	718	7	NA	NA	1	4323	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	80	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	94763891	94770403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_94764071_94765592_94765739_94768363
ES_00057499	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_94905900_94907000
ES_00057500	chr8	+	2743	22	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	246.553366146716	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941160	95041488	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_94941265_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ES_00057502	chr8	+	3371	14	FSM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	203	0	104	0	multi-exon	FALSE	canonical	1	2	junction_1	19.2826991162311	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAGTTGCCCGTCTCAG	8146	False	NA	28	True	AATAAA	-41	NA	95711201	95740827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_95711286_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ES_00057506	chr8	+	524	2	FSM	ENSMUSG00000031875.8	ENSMUST00000212399.2	790	2	0	266	0	245	multi-exon	FALSE	canonical	3	32	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGCCTCCTGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	105067347	105070733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_105067528_105070389
ES_00057511	chr8	+	1151	3	FSM	ENSMUSG00000014859.10	ENSMUST00000212572.2	1151	3	0	0	0	0	multi-exon	FALSE	canonical	3	941	junction_2	62.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	False	NA	21	True	AATAAA	-17	NA	106030556	106032002	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_106030865_106031064_106031110_106031204
ES_00057513	chr8	+	1203	3	NIC	ENSMUSG00000005699.17	novel	1234	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	False	NA	8	True	ATTAAA	-14	NA	106427818	106430122	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_106427919_106428805_106429029_106429242
ES_00057522	chr8	+	1475	10	NNC	ENSMUSG00000095941.4	novel	1649	10	NA	NA	245	53	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	6.23807504338587	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCGATTGTGTGTTTCAG	NA	False	NA	11	True	AATAAA	-18	NA	110828083	110838646	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_110828167_110835597_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
ES_00057525	chr8	+	2155	1	FSM	ENSMUSG00000033430.11	ENSMUST00000212732.2	2139	1	-24	8	-20	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATACTTAAAATCCTCGTG	NA	False	NA	NA	False	NA	NA	NA	112738009	112740164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_112738000_112740200
ES_00057532	chr8	+	773	4	FSM	ENSMUSG00000031812.17	ENSMUST00000181948.2	766	4	-7	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1182.02096240107	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9961	False	NA	-7	True	AATAAA	-19	NA	122317215	122323751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_122317304_122320228_122320390_122322724_122322832_122323334
ES_00057540	chr8	+	993	4	FSM	ENSMUSG00000000740.13	ENSMUST00000132275.8	993	4	0	0	0	0	multi-exon	FALSE	canonical	3	21322	junction_3	1773.2037546643	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGGCAGGAGTTGATGC	NA	False	NA	NA	False	NA	NA	NA	123829391	123831203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123829502_123829583_123829726_123829921_123830096_123830636
ES_00057541	chr8	+	2929	14	FSM	ENSMUSG00000034796.15	ENSMUST00000134235.8	3018	14	89	0	16	0	multi-exon	FALSE	canonical	0	0	junction_1	9.90248310261791	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGCCTGTGCCTTTCTT	NA	False	NA	2	True	AATAAA	-14	NA	123844201	123861919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_+_123844404_123846357_123846541_123850886_123850962_123851140_123851216_123852300_123852385_123852979_123853070_123853371_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ES_00057548	chr8	+	5156	3	ISM	ENSMUSG00000031982.6	ENSMUST00000212036.2	891	6	3784	-278	-2460	111	intron_retention	FALSE	canonical	3	31	junction_1	41.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTCGTTCAGCTTAT	NA	False	NA	NA	False	NA	NA	NA	125452681	125460973	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_+_125455222_125457577_125457756_125458535
ES_00057554	chr8	+	4702	16	NIC	ENSMUSG00000025812.19	novel	4682	16	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_15	30.4321467457614	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTTTGTATGTATTGT	NA	False	NA	NA	False	AATAAA	-13	NA	127790808	128129058	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128126878
ES_00057555	chr8	+	5687	25	NIC	ENSMUSG00000025812.19	novel	5815	25	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_17	37.3886309220092	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTCTCTAGTTTT	NA	False	NA	13	True	AATAAA	-21	NA	127790852	128338767	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128131855_128132046_128136036_128136099_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ES_00057557	chr8	+	5292	23	NIC	ENSMUSG00000025812.19	novel	3204	19	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_15	36.9285942648805	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTCTCTAGTTTT	NA	False	NA	13	True	AATAAA	-21	NA	128026106	128338767	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ES_00057559	chr8	+	2572	5	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	0	2269	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	23.6999472573253	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	129990121	130011594	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956_130009883_130010220
ES_00057560	chr8	-	9322	21	FSM	ENSMUSG00000005534.11	ENSMUST00000091291.5	9355	21	22	11	22	-11	multi-exon	FALSE	canonical	0	0	junction_3	18.3463211571149	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGAGACTATTTTTTGTG	NA	False	NA	-10	True	AATAAA	-4	NA	3329595	3200932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3206024_3208695_3208831_3209452_3209583_3211338_3211499_3211680_3211792_3213236_3213482_3215517_3215586_3217501_3217605_3219708_3219869_3223479_3223620_3224613_3224889_3234950_3235153_3239124_3239293_3242545_3242803_3244794_3244922_3248060_3248276_3252889_3253035_3254629_3254779_3261378_3261701_3308382_3308935_3329028
ES_00057561	chr8	-	440	4	FSM	ENSMUSG00000004630.19	ENSMUST00000133459.8	470	4	30	0	-17	0	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGAGTTGAGTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	3675019	3673376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_3673559_3674507_3674633_3674785_3674901_3675001
ES_00057562	chr8	-	1064	6	FSM	ENSMUSG00000051906.16	ENSMUST00000156276.8	1150	6	83	3	2	-2	multi-exon	FALSE	canonical	2	2	junction_2	2.31516738055805	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACATGGTCTGATGTGT	NA	False	NA	NA	False	AATAAA	-10	NA	4155459	4152795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_4153250_4153621_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270
ES_00057565	chr8	-	2818	1	FSM	ENSMUSG00000001300.17	ENSMUST00000209169.2	2818	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGAGTAACACAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	8711239	8708421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_8708400_8711200
ES_00057566	chr8	-	3307	1	ISM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	2973	971	2973	857	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAACTTTATGTTCCTTT	NA	False	NA	-4	True	NA	NA	NA	10023326	10020019	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_10020000_10023300
ES_00057567	chr8	-	6476	2	FSM	ENSMUSG00000038894.8	ENSMUST00000040514.8	6323	2	-153	0	-153	0	multi-exon	FALSE	canonical	2	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGATTGGAGGACATTTT	NA	False	NA	NA	False	AATAAA	-27	NA	11058611	11034680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11037015_11054469
ES_00057568	chr8	-	1760	15	NIC	ENSMUSG00000056228.11	novel	1902	15	NA	NA	1	2	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	55.7750584298855	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAAGTGGGCCTATGCT	NA	False	NA	-58	True	ATTAAA	-27	NA	11600691	11564018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_11564187_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ES_00057569	chr8	-	303	1	FSM	ENSMUSG00000110313.2	ENSMUST00000211243.2	425	1	182	-60	182	60	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAAAATCTCTAACAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	11765057	11764754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_11764800_11765100
ES_00057570	chr8	-	3752	23	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_19	48.7379779624449	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	False	NA	-1	True	ATTAAA	-16	NA	12722096	12664278	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12708479_12708589_12711299_12711368_12713931_12714040_12721954
ES_00057571	chr8	-	3896	16	FSM	ENSMUSG00000000759.15	ENSMUST00000167547.8	5724	16	0	1828	0	-1828	multi-exon	FALSE	canonical	3	142	junction_5	13.5489236964909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGCCAGAGGCCGGCGA	NA	False	NA	NA	False	NA	NA	NA	12722123	12682237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_12682374_12686945_12687015_12687666_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
ES_00057572	chr8	-	374	5	FSM	ENSMUSG00000038542.15	ENSMUST00000166881.2	374	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	129.74277436528	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGCCCGTGCTTTCACA	NA	False	NA	NA	False	NA	NA	NA	13154831	13129895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13129969_13131263_13131365_13135322_13135418_13150366_13150415_13154774
ES_00057573	chr8	-	236	2	Antisense	novelGene_ENSMUSG00000091784.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	50	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATACATGTAAAATAAAAA	NA	False	NA	NA	False	AATAAA	-43	NA	13181210	13133169	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_13133354_13181158
ES_00057574	chr8	-	1271	9	FSM	ENSMUSG00000038515.11	ENSMUST00000165605.4	1271	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	168.585614377384	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCATGATCTTAGTTGG	3722	False	NA	-1	True	CATAAA	-17	NA	13250535	13226869	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13238509_13238561_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ES_00057575	chr8	-	219	1	FSM	ENSMUSG00000107742.2	ENSMUST00000203963.2	2115	1	656	1240	656	-1240	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCGTACCAGCTTCTG	NA	False	NA	NA	False	CATAAA	-10	NA	13336810	13336591	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_13336600_13336800
ES_00057576	chr8	-	6575	21	FSM	ENSMUSG00000006567.12	ENSMUST00000006742.11	6505	21	-70	0	-70	0	multi-exon	FALSE	canonical	1	1	junction_18	3.94810080924994	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCAGGTTTTTTTTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	22550391	22482800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22484941_22485569_22485673_22487301_22487420_22487498_22487703_22488240_22488384_22490064_22490209_22492723_22492878_22494208_22494392_22496275_22496471_22501030_22501166_22501520_22501676_22501780_22501909_22502726_22502819_22503391_22503626_22504528_22504704_22505893_22505971_22508064_22508227_22510776_22510941_22512312_22512571_22517545_22518753_22549987
ES_00057577	chr8	-	2576	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	323	12	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTATTTTTACCTAGT	NA	False	NA	NA	False	NA	NA	NA	22675512	22658163	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
ES_00057578	chr8	-	987	2	FSM	ENSMUSG00000037725.9	ENSMUST00000211629.2	987	2	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGATTGACTTATT	NA	False	NA	-1	True	AATAAA	-26	NA	22660185	22658460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_22658991_22659728
ES_00057579	chr8	-	1362	6	FSM	ENSMUSG00000031539.7	ENSMUST00000210148.2	1351	6	0	-11	0	11	multi-exon	FALSE	canonical	3	20	junction_4	1.89736659610103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTGAGTTTTGGTCTCC	NA	False	NA	NA	False	AATAAA	-30	NA	23295638	23282291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
ES_00057580	chr8	-	6186	10	NIC	ENSMUSG00000065954.12	novel	6471	11	NA	NA	-63	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	28.0810115536557	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCGGGGTGTGTTGTCTT	NA	False	NA	-2	True	AATAAA	-19	NA	25730980	25644569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25661287_25661341_25665157_25665282_25667949_25668011_25730809
ES_00057581	chr8	-	409	2	FSM	ENSMUSG00000037363.10	ENSMUST00000211133.2	747	2	178	160	178	1	multi-exon	FALSE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATGATCAGACT	NA	False	NA	NA	False	ATTAAA	-4	NA	26071967	26070294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26070425_26071688
ES_00057582	chr8	-	1618	9	FSM	ENSMUSG00000037363.10	ENSMUST00000210321.2	1617	9	0	-1	0	1	multi-exon	TRUE	canonical	1	2	junction_8	3.77491721763537	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATGATCAGACT	2349	False	NA	NA	False	ATTAAA	-4	NA	26087529	26070294	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_26070425_26071688_26071803_26075364_26075485_26076622_26076824_26077311_26077450_26082467_26082612_26083734_26084183_26086377_26086462_26087290
ES_00057583	chr8	-	2421	16	NNC	ENSMUSG00000031575.19	novel	3307	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_14	1130.71038437494	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26330797	26306897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329923_26330039_26330104_26330609
ES_00057584	chr8	-	2331	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_14	866.660215360604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26337672	26306897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329955_26330039_26330104_26337606
ES_00057585	chr8	-	2382	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_14	862.759139814429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26337720	26306897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329958_26330039_26330104_26337606
ES_00057586	chr8	-	2337	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_14	852.035481785954	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26337720	26306897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329913_26330039_26330104_26337606
ES_00057587	chr8	-	2349	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	870.562107044766	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26337722	26306897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329923_26330039_26330104_26337606
ES_00057588	chr8	-	3282	5	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	-6	-821	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	38.9711431702997	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	AATAAA	-15	NA	26484167	26471452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193_26479770_26484114
ES_00057589	chr8	-	226	2	Genic_Genomic	ENSMUSG00000110120.2	novel	1465	1	NA	NA	862	31483	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACTAACAAGTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	26621808	26589722	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_26589749_26621608
ES_00057591	chr8	-	226	1	FSM	ENSMUSG00000091154.3	ENSMUST00000163731.2	616	1	252	138	252	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCCCCAGCGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	27532773	27532547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27532500_27532800
ES_00057592	chr8	-	1598	10	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	26.9791872229294	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTATGTTCTCCTTTT	NA	False	NA	-5	True	AATAAA	-19	NA	27713856	27687484	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689971_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ES_00057593	chr8	-	1333	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	580	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	38.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717942	27715803	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_27716411_27716753_27716822_27717284
ES_00057594	chr8	-	2795	4	FSM	ENSMUSG00000031489.16	ENSMUST00000081438.10	2795	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	54.6524371724527	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27719616	27715803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_27716557_27716753_27716822_27717284_27718779_27719136
ES_00057595	chr8	-	2523	5	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-9453	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	48.5045100995773	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27730305	27715803	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_27716498_27716753_27716822_27717284_27718779_27719136_27719313_27730214
ES_00057597	chr8	-	2913	6	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-271	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	43.9335862410525	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27740915	27715803	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_27716498_27716753_27716822_27717284_27718779_27719136_27719334_27739175_27739238_27740517
ES_00057598	chr8	-	222	2	Antisense	novelGene_ENSMUSG00000039328.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACATTTGGAGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	31607036	31550805	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr8_-_31550835_31606843
ES_00057601	chr8	-	974	8	NNC	ENSMUSG00000031516.12	novel	962	8	NA	NA	0	65091	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.121278064198	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATCGAAAGCAAACCATT	NA	False	NA	NA	False	NA	NA	NA	34575631	34492482	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_34492524_34557573_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ES_00057602	chr8	-	779	2	Genic_Genomic	ENSMUSG00000063412.5	novel	736	1	NA	NA	0	85673	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATCGAAAGCAAACCATT	NA	False	NA	NA	False	NA	NA	NA	34578891	34492482	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_34492520_34578149
ES_00057605	chr8	-	3589	11	NIC	ENSMUSG00000039633.8	novel	3930	12	NA	NA	185	-6	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	33.7971892322424	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAATACTCCCCCCCCCT	NA	False	NA	-8	True	AATAAA	-9	NA	36716485	36683223	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_36684756_36686979_36687133_36689769_36689933_36690017_36690177_36692710_36692833_36696289_36696405_36697234_36697332_36697436_36697678_36701053_36701177_36703142_36703262_36715720
ES_00057606	chr8	-	230	2	Genic_Genomic	ENSMUSG00000109658.2	novel	151	1	NA	NA	0	31805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGATTTGAATTTAATATA	NA	False	NA	NA	False	NA	NA	NA	41136686	41104730	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_41104774_41136499
ES_00057607	chr8	-	229	2	Genic_Genomic	ENSMUSG00000109658.2	novel	151	1	NA	NA	0	31805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGATTTGAATTTAATATA	NA	False	NA	NA	False	NA	NA	NA	41136686	41104730	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_41104773_41136499
ES_00057609	chr8	-	506	3	ISM	ENSMUSG00000031594.10	ENSMUST00000034003.5	1120	8	17754	18	17751	-18	3prime_fragment	FALSE	canonical	3	13	junction_1	1.5	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTCTGAATAACACACT	NA	False	NA	NA	False	AATAAA	-15	NA	41650439	41644488	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_41644718_41649994_41650183_41650350
ES_00057610	chr8	-	2071	11	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38756	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	82.1693981966523	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633279	43582843	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593679_43593776_43594003_43594341_43595725_43595759_43597362_43597564_43618053_43618097_43619056_43619135_43633233
ES_00057611	chr8	-	1788	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38756	-1	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_7	57.3389047680543	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43633279	43582844	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43618053_43618097_43633233
ES_00057612	chr8	-	2629	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38756	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	61.5964483471214	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTTTATTGCTTTC	NA	False	NA	-2	True	TATAAA	-17	NA	43633279	43582845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43584611_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
ES_00057613	chr8	-	1513	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38756	-2	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	70.9305215608125	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTTTATTGCTTTC	NA	False	NA	-2	True	TATAAA	-17	NA	43633279	43582845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43593679_43593776_43594003_43594341_43595725_43595759_43633233
ES_00057614	chr8	-	1120	4	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38756	-2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	108.573579761479	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTTTATTGCTTTC	NA	False	NA	-2	True	TATAAA	-17	NA	43633279	43582845	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_43583726_43589312_43589411_43593679_43593776_43633233
ES_00057615	chr8	-	1837	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
ES_00057616	chr8	-	702	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGTGCATTCTTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	46452923	46449940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
ES_00057617	chr8	-	1328	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	0	62665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3341.33329488395	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTATGTTTTCAATTGT	NA	False	NA	NA	False	NA	NA	NA	46664067	46597168	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_46597198_46660205_46660658_46661434_46661576_46662058_46662546_46663848
ES_00057618	chr8	-	1323	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	0	62665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3341.33329488395	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTATGTTTTCAATTGT	NA	False	NA	NA	False	NA	NA	NA	46664067	46597168	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_46597197_46660209_46660658_46661434_46661576_46662058_46662546_46663848
ES_00057619	chr8	-	450	1	FSM	ENSMUSG00000071102.2	ENSMUST00000095320.2	1002	1	589	-37	589	37	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGAGAGAGGCCCTGAG	NA	False	NA	NA	False	AAGAAA	-34	NA	46708126	46707676	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_46707700_46708100
ES_00057620	chr8	-	2582	10	NIC	ENSMUSG00000031561.17	novel	2267	10	NA	NA	7	321	combination_of_known_junctions	FALSE	canonical	3	47	junction_9	13.5355042958587	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCTGGTTTTTTTTATAT	NA	False	NA	NA	False	AGTAAA	-18	NA	49009067	48787906	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008912
ES_00057622	chr8	-	1726	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	55.4532041566551	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003869	56984556	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003579
ES_00057623	chr8	-	1690	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003892	56984556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
ES_00057624	chr8	-	1606	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	54.5031654247927	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003892	56984556	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
ES_00057626	chr8	-	4316	13	NNC	ENSMUSG00000031608.14	novel	3413	12	NA	NA	0	32937	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.513396054895	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCCAAAGGGAACTTATA	NA	False	NA	NA	False	NA	NA	NA	58106037	57943924	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_57943955_57976860_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
ES_00057627	chr8	-	385	1	FSM	ENSMUSG00000109899.2	ENSMUST00000210821.2	730	1	284	61	284	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGGTTCAAGCCGTCATT	NA	False	NA	NA	False	AATGAA	-8	NA	57973636	57973251	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_57973300_57973600
ES_00057628	chr8	-	5580	13	NIC	ENSMUSG00000004319.16	novel	4175	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	80.1138079373476	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61436320	61363422	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
ES_00057631	chr8	-	816	3	FSM	ENSMUSG00000031604.11	ENSMUST00000140861.2	816	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	358.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATGTTTGCCTTCTAGT	NA	False	NA	NA	False	NA	NA	NA	65174965	65171657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65172216_65173375_65173531_65174862
ES_00057632	chr8	-	977	4	NNC	ENSMUSG00000079042.11	novel	945	3	NA	NA	0	60175	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.630289926872	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCATCCTAATTTGTTAG	NA	False	NA	NA	False	NA	NA	NA	65489824	65420893	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_65420925_65481070_65481644_65488316_65488407_65489541
ES_00057633	chr8	-	1980	2	FSM	ENSMUSG00000109718.2	ENSMUST00000078409.5	1977	2	0	-3	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTGTTTCTTGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	65471175	65465638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_65467553_65471109
ES_00057634	chr8	-	1979	1	ISM	ENSMUSG00000036306.14	ENSMUST00000185176.8	5019	4	49578	0	6306	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACGGTCACTTTTGTCTC	NA	False	NA	-9	True	AATAAA	-20	NA	69587299	69585320	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_69585300_69587300
ES_00057635	chr8	-	369	1	FSM	ENSMUSG00000110444.3	ENSMUST00000211874.2	928	1	440	119	423	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGCTCAAAGGGACATT	NA	False	NA	NA	False	ATTAAA	-16	NA	69847751	69847382	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_69847400_69847800
ES_00057636	chr8	-	267	1	Genic_Genomic	ENSMUSG00000111594.2	novel	NA	NA	NA	NA	30246	152	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACCATGTGGGCATTCAA	3474	False	NA	NA	False	AATAAA	-6	NA	70007568	70007301	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_70007300_70007600
ES_00057637	chr8	-	424	1	Intergenic	novelGene_3945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTCTGTGGCTGCTTTTC	4213	False	NA	NA	False	AATAAA	-41	NA	70014406	70013982	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_70014000_70014400
ES_00057638	chr8	-	1474	2	Intergenic	novelGene_3946	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTTTAAGCAGAGGGTAA	7417	False	NA	NA	False	AATAAA	-16	NA	70022096	70014007	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_70014303_70020917
ES_00057639	chr8	-	245	2	ISM	ENSMUSG00000111594.2	ENSMUST00000216296.2	1480	6	42	21245	42	-21245	5prime_fragment	FALSE	canonical	3	97	junction_1	0	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTACTGCATAACCAAAAA	4929	False	NA	NA	False	AAGAAA	-43	NA	70037772	70028698	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_70028852_70037680
ES_00057640	chr8	-	5774	5	NNC	ENSMUSG00000043090.19	novel	3245	4	NA	NA	16	14832	intron_retention	FALSE	non_canonical	0	0	junction_1	14.0178457688762	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGCTAGTCCATATT	6885	False	NA	NA	False	NA	NA	NA	70227545	70199143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70199170_70213973_70219428_70220282_70220344_70221770_70221898_70227439
ES_00057641	chr8	-	2898	1	Genic_Genomic	ENSMUSG00000044006.9	novel	NA	NA	NA	NA	4424	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTTGTGTCAATTGAAAA	NA	False	NA	2	True	ATTAAA	-18	NA	70335913	70333015	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr8_-_70333000_70335900
ES_00057642	chr8	-	3396	14	NNC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	0	2086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	321.490666304187	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGTGTGGTGGTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	70426921	70357639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70357673_70361305_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00057643	chr8	-	3395	14	NNC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	0	2086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	321.490666304187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGTGTGGTGGTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	70426921	70357639	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70357672_70361305_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ES_00057644	chr8	-	3771	12	NIC	ENSMUSG00000036180.16	novel	3812	13	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	132	junction_5	414.411401770457	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAGAG	NA	False	NA	NA	False	TTTAAA	-18	NA	70449062	70361119	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00057645	chr8	-	3699	13	NNC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	-36	-1	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_4	406.949722187998	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAATAAAAAAAAAGAGA	NA	False	NA	NA	False	TTTAAA	-17	NA	70448919	70361120	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365872_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ES_00057648	chr8	-	3875	23	NIC	ENSMUSG00000058301.9	novel	4518	24	NA	NA	27	-823	intron_retention	FALSE	canonical	3	421	junction_16	57.309367788902	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAGGAAAGAGGAGCGA	NA	False	NA	NA	False	NA	NA	NA	70805901	70784997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ES_00057649	chr8	-	872	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	54	546	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.1247317584214	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCACACAGTGTGGGTGT	5271	False	NA	-5	True	NA	NA	NA	70892171	70856952	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_70857419_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ES_00057650	chr8	-	2920	3	FSM	ENSMUSG00000055707.14	ENSMUST00000209415.2	2919	3	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_1	26.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGACCTGTGCCACC	NA	False	NA	32	True	NA	NA	NA	70929600	70902867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70905504_70908115_70908299_70929499
ES_00057651	chr8	-	577	2	FSM	ENSMUSG00000058833.12	ENSMUST00000143598.8	572	2	0	-5	0	2	multi-exon	FALSE	canonical	3	24	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATCAGCTCTGTATCTTG	NA	False	NA	-3	True	AATAAA	-22	NA	70958762	70956939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70957160_70958405
ES_00057652	chr8	-	4609	5	FSM	ENSMUSG00000055553.17	ENSMUST00000117580.8	696	5	-862	-3051	-862	1757	multi-exon	FALSE	canonical	3	9	junction_1	353.84839620945	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGAGAATCTGGGGCG	NA	False	NA	NA	False	NA	NA	NA	70981468	70964288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_70967399_70968044_70968092_70971014_70971168_70972586_70972712_70980294
ES_00057656	chr8	-	1377	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-159	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	120.610484158256	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	495	False	NA	-6	True	AATAAA	-18	NA	71085265	71082042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71085159
ES_00057657	chr8	-	1420	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-6374	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	126.533263083929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	NA	False	NA	-6	True	AATAAA	-18	NA	71091480	71082042	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71091364
ES_00057659	chr8	-	746	3	FSM	ENSMUSG00000031834.16	ENSMUST00000146707.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTGAACACGCGCAGGA	NA	False	NA	NA	False	NA	NA	NA	71222308	71221283	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71221542_71221705_71221877_71221991
ES_00057660	chr8	-	3436	6	ISM	ENSMUSG00000031833.11	ENSMUST00000211948.2	4251	26	9980	-1087	1031	0	intron_retention	FALSE	canonical	3	41	junction_1	6.27375485654325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTGTGTGCATTTGTG	NA	False	NA	0	True	AATAAA	-20	NA	71235101	71230760	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155
ES_00057661	chr8	-	5412	26	NIC	ENSMUSG00000031833.11	novel	4251	26	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	13.7877626901539	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTGTGTGCATTTGTG	NA	False	NA	0	True	AATAAA	-20	NA	71245077	71230760	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_71232582_71232838_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71244869
ES_00057662	chr8	-	5305	27	FSM	ENSMUSG00000031833.11	ENSMUST00000166004.3	5305	27	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_26	15.3892300771307	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTGTGTGCATTTGTG	NA	False	NA	0	True	AATAAA	-20	NA	71249632	71230760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71249356_71249447_71249543
ES_00057664	chr8	-	2243	8	NNC	ENSMUSG00000002910.12	novel	2355	8	NA	NA	0	22996	intron_retention	FALSE	non_canonical	0	0	junction_1	50.9032696115177	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTACCAAGGGGCTGGA	NA	False	NA	NA	False	NA	NA	NA	71292162	71264776	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_71264804_71287772_71288639_71288863_71289022_71289501_71289646_71289753_71290011_71290087_71290191_71291337_71291486_71291622
ES_00057665	chr8	-	260	1	FSM	ENSMUSG00000002910.12	ENSMUST00000213095.2	1459	1	124	1075	124	36	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTTGCTTCAGTAGCCT	NA	False	NA	NA	False	NA	NA	NA	71289107	71288847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71288800_71289100
ES_00057666	chr8	-	1608	8	FSM	ENSMUSG00000002908.18	ENSMUST00000212509.3	1608	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	5.77821383318762	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGCTGACCGCTAGACT	NA	False	NA	NA	False	NA	NA	NA	71308040	71296959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71297206_71299138_71299209_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644
ES_00057667	chr8	-	679	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350040	71348022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
ES_00057668	chr8	-	489	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212494.2	473	4	0	-16	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8545.57961105558	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGCTTGTTTGCTTC	NA	False	NA	-19	True	AATAAA	-11	NA	71350056	71348026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71348152_71348559_71348690_71348776_71348957_71350002
ES_00057669	chr8	-	1452	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	696	False	NA	-9	True	NA	NA	NA	71725020	71703768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ES_00057671	chr8	-	721	8	FSM	ENSMUSG00000034799.17	ENSMUST00000176127.2	721	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.84919816723071	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGGTGAAGGGCACAGG	NA	False	NA	NA	False	NA	NA	NA	72098597	72094103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72094153_72094496_72094586_72094772_72094851_72095738_72095820_72097196_72097341_72097516_72097614_72098328_72098456_72098541
ES_00057672	chr8	-	924	8	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	45	junction_6	3.4166459266004	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGTGTTATATATAACAAG	NA	False	NA	0	True	NA	NA	NA	72124383	72112987	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ES_00057673	chr8	-	515	1	FSM	ENSMUSG00000110569.2	ENSMUST00000212029.2	764	1	285	-36	285	36	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTGACCTGCATCTGC	5627	False	NA	NA	False	NA	NA	NA	72157327	72156812	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_72156800_72157300
ES_00057674	chr8	-	3152	27	NIC	ENSMUSG00000070000.14	novel	3188	28	NA	NA	4	1	combination_of_known_splicesites	FALSE	non_canonical	1	1	junction_15	43.3067529615302	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATAGCTGTGATTTTTG	NA	False	NA	-5	True	NA	NA	NA	72178344	72161036	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72167343_72167417_72167522_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ES_00057675	chr8	-	3185	27	NNC	ENSMUSG00000070000.14	novel	3351	27	NA	NA	-6198	0	intron_retention	FALSE	non_canonical	0	0	junction_16	44.3502066331417	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72184558	72161296	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72184457
ES_00057676	chr8	-	3676	15	FSM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	0	-7	0	7	multi-exon	FALSE	canonical	2	9	junction_14	8.74000887310996	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCCTCCCACCCTTGT	NA	False	NA	-1	True	AATAAA	-24	NA	74079184	73541219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74079093
ES_00057677	chr8	-	2446	11	NIC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	-62	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	23.2381152419898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTACGTGTCTTCTTTT	NA	False	NA	-1	True	TTTAAA	-9	NA	78337389	78322607	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731_78336949_78337290
ES_00057678	chr8	-	1623	7	NIC	ENSMUSG00000037022.4	novel	5650	7	NA	NA	-16	271	combination_of_known_junctions	FALSE	canonical	2	9	junction_5	22.8138603095185	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGGTTACATCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	80021582	79994265	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007809_80008284_80021542
ES_00057680	chr8	-	233	2	FSM	ENSMUSG00000031715.15	ENSMUST00000150277.2	334	2	101	0	101	0	multi-exon	FALSE	canonical	3	1450	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAGAAAGAAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	81437389	81436366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_81436396_81437185
ES_00057681	chr8	-	1489	1	FSM	ENSMUSG00000110617.2	ENSMUST00000211819.2	1746	1	584	-327	584	327	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAATACAGGAGAACA	NA	False	NA	NA	False	ATTAAA	-38	NA	84205261	84203772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84203800_84205300
ES_00057682	chr8	-	668	3	FSM	ENSMUSG00000031708.18	ENSMUST00000212187.2	657	3	0	-11	0	4	multi-exon	FALSE	canonical	3	3555	junction_2	356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTTTAGGGGTA	NA	False	NA	1	True	AATAAA	-19	NA	84299240	84298322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84298688_84298860_84298950_84299026
ES_00057683	chr8	-	1340	12	FSM	ENSMUSG00000031708.18	ENSMUST00000238997.2	1334	12	0	-6	0	4	multi-exon	FALSE	canonical	3	3555	junction_3	307.437637296487	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTTTAGGGGTA	NA	False	NA	1	True	AATAAA	-19	NA	84301471	84298322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106
ES_00057684	chr8	-	958	2	FSM	ENSMUSG00000074219.4	ENSMUST00000238640.2	958	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATGGTGTTGGCGGAGA	3252	False	NA	NA	False	NA	NA	NA	84660686	84659575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84660202_84660354
ES_00057685	chr8	-	972	4	NIC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	68.8250600354906	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	7547	False	NA	-9	True	AATAAA	-22	NA	84738773	84736850	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_84737122_84737339_84737402_84737769_84738378_84738742
ES_00057686	chr8	-	3408	30	NNC	ENSMUSG00000036686.17	novel	3471	29	NA	NA	0	2593	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	20.8794171243604	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACAGGGCTGGAGAGATG	NA	False	NA	NA	False	NA	NA	NA	84874494	84856863	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_84856883_84859467_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
ES_00057687	chr8	-	3264	28	FSM	ENSMUSG00000036686.17	ENSMUST00000117424.9	3262	28	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_24	25.969804139102	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTTTTTGTCCTTGAT	NA	False	NA	1	True	AATGAA	-26	NA	84874494	84859454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865456_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870586_84870653_84870737_84870851_84872942_84873079_84874275
ES_00057688	chr8	-	804	4	FSM	ENSMUSG00000004996.10	ENSMUST00000005122.4	804	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	85.5582972143685	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTCATAGAGGAACGCC	7043	False	NA	NA	False	NA	NA	NA	84983876	84980559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_84980717_84980804_84980982_84982936_84983049_84983518
ES_00057689	chr8	-	3991	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	0	-2467	0	2467	mono-exon	FALSE	NA	NA	NA	NA	NA	358	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	85389483	85385492	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85385500_85389500
ES_00057690	chr8	-	808	2	FSM	ENSMUSG00000001910.6	ENSMUST00000238449.2	792	2	-16	0	-16	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGAAGGAGGCTGGAGG	NA	False	NA	NA	False	NA	NA	NA	85414236	85403312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_85403882_85413997
ES_00057691	chr8	-	878	7	NIC	ENSMUSG00000052926.17	novel	1532	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	423.006468298325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8254	False	NA	-8	True	AATAAA	-14	NA	85692669	85684295	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_85684494_85684594_85684719_85686404_85686493_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ES_00057692	chr8	-	1242	7	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	52	junction_3	703.697062346828	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8418	False	NA	-4	True	AATAAA	-14	NA	85751892	85744559	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_85744885_85745150_85745349_85745439_85745548_85746146_85746302_85746388_85746538_85750806_85750955_85751733
ES_00057695	chr8	-	2263	6	Intergenic	novelGene_3980	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	45.6709973615642	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCATTTTTTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	89779647	89772259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89773214_89773277_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89779568
ES_00057696	chr8	-	1981	6	Intergenic	novelGene_3981	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	63.452659518731	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTGTCCATTTTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	89779641	89772261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89773214_89773277_89773761_89774349_89774422_89775330_89775532_89776215_89776356_89779508
ES_00057697	chr8	-	2443	7	Intergenic	novelGene_3982	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	54.7529806393121	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTGTCCATTTTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	89779669	89772261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89773214_89773277_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89777159_89777260_89779508
ES_00057698	chr8	-	620	5	Intergenic	novelGene_3984	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	53.9878458544143	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTGTGGCACCTCACTA	NA	False	NA	NA	False	NA	NA	NA	89779636	89772325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_-_89772405_89774349_89774422_89775330_89775532_89776215_89776356_89779508
ES_00057699	chr8	-	617	1	FSM	ENSMUSG00000069962.4	ENSMUST00000093326.4	615	1	11	-13	11	13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATGGACTAACCTATGC	NA	False	NA	NA	False	NA	NA	NA	89914177	89913560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_89913600_89914200
ES_00057700	chr8	-	1389	3	FSM	ENSMUSG00000110212.2	ENSMUST00000211762.2	1425	3	36	0	36	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACATTAGCAGTTACAAA	NA	False	NA	NA	False	NA	NA	NA	91489188	91486090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_91487378_91488284_91488358_91489159
ES_00057701	chr8	-	520	2	FSM	ENSMUSG00000031736.12	ENSMUST00000179400.2	651	2	131	0	131	0	multi-exon	FALSE	canonical	3	12	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCTTGATCCACTTTGGC	6602	False	NA	NA	False	NA	NA	NA	93073367	93071537	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_93071668_93072977
ES_00057702	chr8	-	1080	4	FSM	ENSMUSG00000110670.2	ENSMUST00000212930.2	1110	4	30	0	30	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCGGGCCACTCTGCAG	204	False	NA	NA	False	NA	NA	NA	94153941	94149768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_94150064_94150168_94150242_94152733_94152830_94153325
ES_00057703	chr8	-	1793	9	NNC	ENSMUSG00000031774.9	novel	828	9	NA	NA	-8370	1468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	216.626262258296	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACATGCACGCACACAC	NA	False	NA	NA	False	NA	NA	NA	95317994	95299297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95299327_95301567_95302486_95306027_95306093_95309511_95309642_95313950_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95317800
ES_00057704	chr8	-	1482	9	NNC	ENSMUSG00000031781.15	novel	1807	9	NA	NA	0	61648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.297709707256	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTCAGTCCAACTTCGGG	NA	False	NA	NA	False	NA	NA	NA	95559287	95484783	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_95484812_95549188_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142
ES_00057705	chr8	-	2650	19	NIC	ENSMUSG00000031788.15	novel	3277	20	NA	NA	10	-116	combination_of_known_splicesites	FALSE	canonical	3	26	junction_16	17.8975134489214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTGCCAGGCCCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	95869165	95827045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_95827081_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95869059
ES_00057706	chr8	-	1635	12	NNC	ENSMUSG00000046707.10	novel	3773	12	NA	NA	-103	7	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_10	87.6091055307656	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCGTATTTAGTGTGCA	NA	False	NA	1	True	AATAAA	-20	NA	96215192	96174594	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_96175047_96179977_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203938_96214192_96214305_96214971
ES_00057708	chr8	-	373	1	FSM	ENSMUSG00000110701.2	ENSMUST00000212264.2	699	1	44	282	44	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGACTGAGAGGCACCGG	1924	False	NA	NA	False	NA	NA	NA	96401978	96401605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96401600_96402000
ES_00057709	chr8	-	3809	8	FSM	ENSMUSG00000036550.17	ENSMUST00000212302.2	3809	8	0	0	0	0	multi-exon	FALSE	canonical	3	1421	junction_3	170.782831426944	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGAGTCCACTGTGCCTT	NA	False	NA	-6	True	ATTAAA	-13	NA	96457952	96446258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040
ES_00057715	chr8	-	7657	5	NNC	ENSMUSG00000096188.2	novel	7734	4	NA	NA	13	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	15.8804124631572	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGCGCTTTAGTCTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	105122426	105074827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_105076806_105076864_105081924_105082893_105082993_105084329_105084507_105122082
ES_00057717	chr8	-	1818	21	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	0	27372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.929716744954	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGACTATTAGGGTGT	3356	False	NA	NA	False	NA	NA	NA	105261246	105210287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_105210321_105237659_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ES_00057718	chr8	-	1789	3	FSM	ENSMUSG00000031887.14	ENSMUST00000136239.2	710	3	-165	-914	-165	10	multi-exon	FALSE	canonical	3	66	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTTTAATCCTATTTAGC	4829	False	NA	NA	False	NA	NA	NA	105986917	105984907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr8_-_105985928_105986068_105986262_105986341
ES_00057723	chr8	-	1308	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_7	59.2993099729272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434754	106430282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434712
ES_00057724	chr8	-	1492	7	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	59.8470272166184	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434777	106430282	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106430654_106430744_106430882_106430978_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
ES_00057726	chr8	-	1230	5	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	54.4902514216993	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937552	106927348	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937261_106937350
ES_00057737	chr8	-	5102	26	NIC	ENSMUSG00000031959.16	novel	5083	26	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	12.3667942491173	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATCGTGTACTAACACA	NA	False	NA	-19	True	AGTAAA	-16	NA	112248746	112175428	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr8_-_112177712_112185242_112185386_112185554_112185679_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ES_00057739	chr8	-	3677	3	NNC	ENSMUSG00000031953.3	novel	3878	3	NA	NA	131	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	8.5	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTGCGTTGGGAACCT	NA	False	NA	-6	True	AATAAA	-13	NA	112603251	112589670	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_112593129_112596288_112596391_112603134
ES_00057742	chr8	-	2213	16	NNC	ENSMUSG00000031948.15	novel	2189	16	NA	NA	0	28597	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	552.407514632289	258	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTAGGCAGTGTTGGT	NA	False	NA	NA	False	TTTAAA	-32	NA	112737955	112691477	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr8_-_112691503_112720074_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
ES_00057756	chr8	-	1629	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20975	-716	3545	716	intron_retention	FALSE	canonical	3	94	junction_1	2	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCCAACTGACTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	122650668	122642148	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr8_-_122643247_122644726_122644883_122650293
ES_00057767	chr8	+	2880	1	Intergenic	novelGene_3850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATATTTATTTACCATG	NA	False	NA	NA	False	NA	NA	NA	4346286	4349166	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_4346300_4349200
ES_00057768	chr8	+	644	1	Intergenic	novelGene_3855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCTAAACCTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	5270720	5271364	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5270700_5271400
ES_00057770	chr8	+	552	1	Intergenic	novelGene_3860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACCAACAACTTATGAGC	NA	False	NA	NA	False	NA	NA	NA	5272555	5273107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5272600_5273100
ES_00057771	chr8	+	238	1	Intergenic	novelGene_3861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTCTCTCTGCTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	5273347	5273585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_5273300_5273600
ES_00057772	chr8	+	1813	1	Intergenic	novelGene_3878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2377	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	15809362	15811175	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_15809400_15811200
ES_00057773	chr8	+	3295	1	Intergenic	novelGene_3888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAAACACC	NA	False	NA	NA	False	AATGAA	-31	NA	19835710	19839005	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_19835700_19839000
ES_00057774	chr8	+	296	1	Intergenic	novelGene_3895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTGTTCATCTTAGCCA	NA	False	NA	NA	False	AAGAAA	-3	NA	21370576	21370872	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_21370600_21370900
ES_00057775	chr8	+	230	1	Intergenic	novelGene_3898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACAGATTTTTAAATGC	3868	False	NA	NA	False	NA	NA	NA	23099500	23099730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_23099500_23099700
ES_00057776	chr8	+	203	1	Intergenic	novelGene_3899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTTTATGGGCGGGAAA	4475	False	NA	NA	False	NA	NA	NA	23100107	23100310	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_23100100_23100300
ES_00057777	chr8	+	234	1	Intergenic	novelGene_3905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTGGACTTGTGAGTT	NA	False	NA	NA	False	AATATA	-2	NA	26246166	26246400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_26246200_26246400
ES_00057778	chr8	+	233	1	Intergenic	novelGene_3919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTACGTCACAGTGATGAG	NA	False	NA	NA	False	NA	NA	NA	37718402	37718635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_37718400_37718600
ES_00057779	chr8	+	315	1	Intergenic	novelGene_3921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGCAGGGATAACATTGAA	NA	False	NA	NA	False	NA	NA	NA	38245196	38245511	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_38245200_38245500
ES_00057780	chr8	+	203	1	Intergenic	novelGene_3925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAAGGAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	43698896	43699099	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_43698900_43699100
ES_00057781	chr8	+	208	1	Intergenic	novelGene_3929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACCAACCTTTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	47189420	47189628	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_47189400_47189600
ES_00057783	chr8	+	210	1	Intergenic	novelGene_3942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAGCTTTTATTAAAAT	NA	False	NA	NA	False	AAAAAG	-14	NA	65511972	65512182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_65512000_65512200
ES_00057784	chr8	+	224	1	Intergenic	novelGene_3951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATATAATAAATAAATCTTG	NA	False	NA	-7	True	NA	NA	NA	70631995	70632219	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_70632000_70632200
ES_00057785	chr8	+	202	1	Intergenic	novelGene_3954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTACAGAAAATTAGCTT	NA	False	NA	NA	False	NA	NA	NA	71147020	71147222	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_71147000_71147200
ES_00057786	chr8	+	200	1	Intergenic	novelGene_3955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCTTTTCATTTTTATTG	7405	False	NA	NA	False	NA	NA	NA	71280171	71280371	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_71280200_71280400
ES_00057787	chr8	+	240	1	Intergenic	novelGene_3959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCAGGGGCAGGTGGAT	NA	False	NA	NA	False	NA	NA	NA	72902584	72902824	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_72902600_72902800
ES_00057788	chr8	+	333	1	Intergenic	novelGene_3961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAAAACATTTTTTTAA	NA	False	NA	NA	False	AATAAA	-10	NA	73031883	73032216	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_73031900_73032200
ES_00057789	chr8	+	201	1	Intergenic	novelGene_3962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAGTCACCTCTTAAGAG	NA	False	NA	NA	False	NA	NA	NA	73090779	73090980	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_73090800_73091000
ES_00057790	chr8	+	225	1	Intergenic	novelGene_3966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAGAAGTAACAGATA	NA	False	NA	NA	False	NA	NA	NA	80405469	80405694	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_80405500_80405700
ES_00057791	chr8	+	200	1	Intergenic	novelGene_3991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGCTCTTAAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	95566217	95566417	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr8_+_95566200_95566400
ES_00057806	chr9	+	1560	1	FSM	ENSMUSG00000110587.2	ENSMUST00000212122.2	1222	1	-249	-89	-249	89	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAAACAGGTACTGAGC	NA	False	NA	NA	False	AATATA	-25	NA	3186860	3188420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3186900_3188400
ES_00057807	chr9	+	384	3	FSM	ENSMUSG00000025899.15	ENSMUST00000212666.2	369	3	-15	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	25	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTCCAGGCCTCTTGGT	-8	True	NA	NA	False	AAAACA	-15	NA	3335477	3344616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3335595_3343014_3343253_3344587
ES_00057808	chr9	+	3603	12	FSM	ENSMUSG00000025899.15	ENSMUST00000053407.13	3603	12	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	15.6162661540793	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAATTAAAAATA	-8	True	NA	NA	False	NA	NA	NA	3335477	3386929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3335749_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ES_00057809	chr9	+	7672	12	FSM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	0	2	0	-2	multi-exon	FALSE	canonical	2	35	junction_1	12.2683493875181	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTGTCATAGTATTTT	-8	True	NA	NA	False	NA	NA	NA	3335477	3391152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ES_00057810	chr9	+	4378	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	68	0	68	0	multi-exon	TRUE	canonical	3	200	junction_7	32.0504576240346	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGATTATCTTGTATTTTA	NA	False	NA	-51	True	NA	NA	NA	3403659	3479236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
ES_00057811	chr9	+	5914	3	FSM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	-269	-3560	227	3560	multi-exon	FALSE	canonical	3	277	junction_2	20.5	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTTGTAAAAAAAAAGAAA	NA	False	NA	NA	False	AATACA	-12	NA	3403818	3416759	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3404191_3409965_3410077_3411328
ES_00057812	chr9	+	1591	8	FSM	ENSMUSG00000025898.7	ENSMUST00000212128.2	2283	8	0	692	0	-692	multi-exon	FALSE	canonical	3	200	junction_7	39.8200031775642	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGCTCAGATAGCTGGC	9	True	NA	NA	False	ATTAAA	-20	NA	3404087	3431250	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437
ES_00057813	chr9	+	2195	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	0	36	0	-15	multi-exon	FALSE	canonical	3	30	junction_1	14.5	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCTTATTTACATTAAAC	-2	True	NA	NA	False	AATAAA	-12	NA	4309832	4331696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_4309935_4316826_4317072_4329848
ES_00057814	chr9	+	2823	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	-23	0	-23	0	multi-exon	FALSE	canonical	3	88	junction_1	13	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-28	True	NA	14	True	AATAAA	-1	NA	4376538	4386870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_4376624_4383536_4384143_4384738
ES_00057816	chr9	+	1697	2	Intergenic	novelGene_4042	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAACATAACAGTAGATT	NA	False	NA	NA	False	NA	NA	NA	5548716	5550473	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5550163_5550222
ES_00057817	chr9	+	2281	1	Intergenic	novelGene_4044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTAGTTTTCTGGGC	NA	False	NA	NA	False	NA	NA	NA	5549907	5552188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5549900_5552200
ES_00057818	chr9	+	217	2	Intergenic	novelGene_4047	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	2	junction_1	0	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGGAAAGATCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	6819761	6861106	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_6819815_6860942
ES_00057819	chr9	+	2427	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	-6	0	-6	0	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATTTGCCTTCTTAATA	NA	False	NA	NA	False	AGTAAA	-20	NA	7184513	7208205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
ES_00057821	chr9	+	437	1	FSM	ENSMUSG00000110887.2	ENSMUST00000214564.2	548	1	-109	220	-109	-220	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTGACAAACCAAGGGGC	NA	False	NA	NA	False	NA	NA	NA	7723038	7723475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_7723000_7723500
ES_00057822	chr9	+	681	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	-57	-144	-57	144	mono-exon	FALSE	NA	NA	NA	NA	NA	933	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGTCTCAGTGAAGTC	-7	True	NA	NA	False	AATAAA	-41	NA	7751668	7752349	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_7751700_7752300
ES_00057823	chr9	+	2907	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	NA	False	NA	16	True	AATAAA	-19	NA	7764041	7794334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
ES_00057824	chr9	+	259	3	FSM	ENSMUSG00000110161.2	ENSMUST00000211167.2	545	3	2	284	2	-284	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAGGAGGAAGAGGAGG	NA	False	NA	NA	False	AATACA	-8	NA	8004832	8008986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_8004885_8005927_8006106_8008957
ES_00057825	chr9	+	6603	8	FSM	ENSMUSG00000031870.17	ENSMUST00000189181.7	6889	8	286	0	286	0	multi-exon	FALSE	canonical	1	1	junction_4	2.32992949004287	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAACTTGTAACTTCTA	278	False	NA	NA	False	AATAAA	-22	NA	8900119	8968612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_8902085_8903596_8903749_8922599_8922717_8946645_8946952_8956244_8956390_8958330_8958462_8961396_8961555_8964983
ES_00057826	chr9	+	2828	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	-16	-443	-16	146	multi-exon	FALSE	canonical	3	27	junction_1	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGTAATTAATAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	13246593	13254867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13246677_13251695_13252424_13252850
ES_00057829	chr9	+	3203	17	NIC	ENSMUSG00000031918.17	novel	3106	16	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_4	125.44469336624	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCCACAGTTGTCT	NA	False	NA	26	True	ATTAAA	-15	NA	13660465	13717776	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_13660697_13671713_13671785_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ES_00057830	chr9	+	3734	15	FSM	ENSMUSG00000031918.17	ENSMUST00000034396.14	3788	15	54	0	54	0	multi-exon	FALSE	canonical	3	316	junction_2	44.4939803312121	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13659759	13717777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13660697_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ES_00057831	chr9	+	3804	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	-717	1	54	0	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCCACAGTTGTCT	NA	False	NA	26	True	ATTAAA	-15	NA	13659759	13717776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ES_00057832	chr9	+	3139	16	FSM	ENSMUSG00000031918.17	ENSMUST00000134674.8	3106	16	-34	1	-18	0	multi-exon	FALSE	canonical	3	121	junction_3	100.823057327622	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCCACAGTTGTCT	NA	False	NA	26	True	ATTAAA	-15	NA	13660458	13717776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13660697_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ES_00057834	chr9	+	3790	10	NNC	ENSMUSG00000037808.14	novel	3702	10	NA	NA	-91	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_7	37.2677996249965	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13738920	13757837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748135_13748269_13750935_13751038_13755324
ES_00057835	chr9	+	3714	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	-12	0	-12	0	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13738999	13757837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
ES_00057836	chr9	+	3760	11	FSM	ENSMUSG00000037808.14	ENSMUST00000156680.2	3760	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	54.6652540467892	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13747954_13748013_13748132_13748269_13750935_13751038_13755324
ES_00057837	chr9	+	9145	10	FSM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	-20	0	-20	0	multi-exon	FALSE	canonical	3	39	junction_6	6.49976257875985	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTTCTTTCTTTAAT	NA	False	NA	9	True	AATAAA	-15	NA	14187576	14244397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_14187926_14217494_14217561_14219756_14219955_14221543_14221727_14225791_14226029_14227361_14227537_14231590_14231710_14232367_14232559_14233858_14234004_14236915
ES_00057838	chr9	+	1252	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	-98	-323	-68	111	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTAGCTATACAAATGGT	NA	False	NA	114	True	NA	NA	NA	14411844	14421984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ES_00057839	chr9	+	1111	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATACAGCTTATAAAAAG	NA	False	NA	3	True	AATAAA	-27	NA	14411912	14421873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ES_00057840	chr9	+	3307	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	-21	0	-21	0	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAATAATCTCATTCCCT	NA	False	NA	9	True	AATAAA	-27	NA	14695928	14745942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ES_00057841	chr9	+	5779	20	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	6	-6	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	53.5567113407824	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAATTTTGAACGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	14695977	14748413	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ES_00057842	chr9	+	3037	19	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	6	-9	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	84.913336357477	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAGATAAGATAAATAATC	NA	False	NA	0	True	AATAAA	-18	NA	14696003	14745933	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ES_00057843	chr9	+	3534	4	FSM	ENSMUSG00000031932.15	ENSMUST00000034408.12	3586	4	52	0	8	0	multi-exon	FALSE	canonical	2	2	junction_2	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGGCTGTGCTTCTTGGC	NA	False	NA	NA	False	AATAAA	-15	NA	14771557	14782085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_14772217_14776067_14776194_14778144_14778279_14779470
ES_00057844	chr9	+	1996	4	FSM	ENSMUSG00000031937.8	ENSMUST00000034413.8	1991	4	-10	5	-10	-5	multi-exon	FALSE	canonical	3	5	junction_3	3.68178700572909	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATCTAAGCAAGTTTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	15150330	15170707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15150655_15168525_15168853_15168946_15169088_15169503
ES_00057845	chr9	+	704	4	FSM	ENSMUSG00000031939.17	ENSMUST00000215124.2	629	4	-75	0	-31	0	multi-exon	FALSE	canonical	3	69	junction_1	198.269737703183	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTTTTTTTTTAAATG	9041	False	NA	NA	False	AAGAAA	-35	NA	15217478	15220211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820
ES_00057846	chr9	+	1156	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	-8	0	-8	0	multi-exon	FALSE	canonical	3	55	junction_6	190.157317912184	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	9064	False	NA	5	True	AATAAA	-16	NA	15217501	15223400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
ES_00057847	chr9	+	1460	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	-8	0	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAATAAACTAATGAT	9064	False	NA	-22	True	ATTAAA	-19	NA	15217501	15223373	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ES_00057849	chr9	+	1228	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	-12	0	0	0	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9106	False	NA	-1	True	NA	NA	NA	15217543	15228266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ES_00057850	chr9	+	2351	11	FSM	ENSMUSG00000031939.17	ENSMUST00000213923.2	2339	11	-12	0	0	0	multi-exon	FALSE	canonical	3	217	junction_8	135.36502502493	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTTATAGTTTGTATG	9106	False	NA	5	True	NA	NA	NA	15217543	15228272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ES_00057851	chr9	+	3126	10	FSM	ENSMUSG00000031939.17	ENSMUST00000214054.2	3126	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	176.419953520003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	9106	False	NA	7	True	NA	NA	NA	15217543	15228274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15217580_15218168_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15226428_15226678_15226737_15228184
ES_00057852	chr9	+	4881	8	FSM	ENSMUSG00000031939.17	ENSMUST00000213235.2	4881	8	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_6	149.118224566815	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	NA	False	NA	7	True	NA	NA	NA	15219021	15228274	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15225329_15225526_15225561_15226397_15226428_15226678
ES_00057854	chr9	+	1210	11	FSM	ENSMUSG00000031939.17	ENSMUST00000216825.2	1210	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_10	180.996160180265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	NA	False	NA	-1	True	NA	NA	NA	15219041	15228266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226773_15228184
ES_00057856	chr9	+	428	5	ISM	ENSMUSG00000031939.17	ENSMUST00000213923.2	2339	11	7554	1	1013	-1	3prime_fragment	FALSE	canonical	3	217	junction_2	23.1354706025185	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	NA	False	NA	4	True	NA	NA	NA	15225109	15228271	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ES_00057857	chr9	+	545	1	FSM	ENSMUSG00000111132.2	ENSMUST00000214696.2	545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGAAGTTTAGGATATC	NA	False	NA	NA	False	NA	NA	NA	15232028	15232573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15232000_15232600
ES_00057858	chr9	+	712	1	FSM	ENSMUSG00000111529.2	ENSMUST00000214427.2	712	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACGCTGGCATTCTTCCA	NA	False	NA	NA	False	TATAAA	-38	NA	15232900	15233612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15232900_15233600
ES_00057859	chr9	+	1008	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	-14	0	-14	0	multi-exon	FALSE	canonical	2	6	junction_1	1	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGGTGTTTCTCTTGT	NA	False	NA	8	True	AATAAA	-16	NA	15404713	15456553	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15404926_15436923_15437001_15455834
ES_00057860	chr9	+	6588	11	FSM	ENSMUSG00000043885.15	ENSMUST00000061568.9	6539	11	14	-63	14	63	multi-exon	FALSE	canonical	2	6	junction_1	2.41039415863879	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGGGGGATCTGTCCA	NA	False	NA	NA	False	AAGAAA	-31	NA	15621048	15654720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15621134_15630928_15631053_15631995_15632087_15633228_15633318_15634809_15634906_15635816_15635902_15638106_15638335_15639996_15640096_15645432_15645603_15648167_15648338_15649369
ES_00057861	chr9	+	852	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAAAAGGATTTAAACAG	NA	False	NA	NA	False	NA	NA	NA	16941340	16942192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_16941300_16942200
ES_00057862	chr9	+	433	1	FSM	ENSMUSG00000111613.2	ENSMUST00000215709.2	1262	1	388	441	388	-441	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGTCGGTCAAAGATGTTA	NA	False	NA	NA	False	NA	NA	NA	17644353	17644786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_17644400_17644800
ES_00057863	chr9	+	1217	6	FSM	ENSMUSG00000001774.9	ENSMUST00000214441.2	941	6	-222	-54	-46	54	multi-exon	FALSE	canonical	3	795	junction_1	84.1436866318561	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGTCAGTGGCCCTGG	8319	False	NA	NA	False	AATAAA	-42	NA	18203374	18217054	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588
ES_00057864	chr9	+	5789	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTTAAGAGTCTGTGG	8365	False	NA	NA	False	ATTAAA	-22	NA	18203420	18228738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ES_00057867	chr9	+	4063	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-104	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_2	34.0665614972351	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533293	19561027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ES_00057868	chr9	+	3988	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	38.1313519298752	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533423	19561027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ES_00057869	chr9	+	3991	9	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	77.4721724233934	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533432	19561027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_19533582_19535527_19535595_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ES_00057870	chr9	+	558	2	Genic_Genomic	ENSMUSG00000051118.10	novel	9649	3	NA	NA	-47494	-800	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTAGACTTTCAACCAA	NA	False	NA	NA	False	NA	NA	NA	19780666	19839620	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_+_19780715_19839110
ES_00057871	chr9	+	557	2	Genic_Genomic	ENSMUSG00000051118.10	novel	9649	3	NA	NA	-47494	-800	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTAGACTTTCAACCAA	NA	False	NA	NA	False	NA	NA	NA	19780666	19839620	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_+_19780714_19839110
ES_00057872	chr9	+	429	1	FSM	ENSMUSG00000111661.2	ENSMUST00000213332.2	481	1	80	-28	80	28	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCACCAGAAAAATAAATAAA	NA	False	NA	NA	False	AATAAA	-8	NA	20466704	20467133	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20466700_20467100
ES_00057873	chr9	+	776	1	FSM	ENSMUSG00000058192.17	ENSMUST00000214194.2	903	1	40	87	6	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTATGGCTTTCTA	NA	False	NA	NA	False	CATAAA	-11	NA	20492626	20493402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20492600_20493400
ES_00057874	chr9	+	12061	6	FSM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	122	791	-78	-791	multi-exon	FALSE	canonical	3	29	junction_1	3.8262252939418	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTACAAAATGTACATTAA	NA	False	NA	NA	False	NA	NA	NA	20492742	20515914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634_20502718_20504456
ES_00057875	chr9	+	2511	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	9544	False	NA	16	True	AATAAA	-13	NA	20554173	20558071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
ES_00057876	chr9	+	2032	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	0	82	0	-82	multi-exon	FALSE	canonical	3	1046	junction_4	63.2114507031756	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGGTGATGCACACCT	9984	False	NA	123	True	NA	NA	NA	20554613	20558178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ES_00057877	chr9	+	505	5	FSM	ENSMUSG00000084786.10	ENSMUST00000162303.8	505	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	467.366558495577	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556116	20558071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20556273_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ES_00057878	chr9	+	536	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161486.8	794	5	0	258	0	-82	multi-exon	FALSE	canonical	3	14	junction_3	472.738828530088	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGGTGATGCACACCT	NA	False	NA	123	True	NA	NA	NA	20556129	20558178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556897_20556956_20557911
ES_00057879	chr9	+	489	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_4	473.611127403063	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCTTTGCTGCTGTC	NA	False	NA	10	True	AATAAA	-7	NA	20556163	20558065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556990_20557825
ES_00057880	chr9	+	3745	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	0	98	0	-98	multi-exon	FALSE	canonical	3	2626	junction_2	73.4892282356174	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTGCGCTACCACTGCCC	NA	False	NA	NA	False	NA	NA	NA	20563390	20577782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
ES_00057881	chr9	+	1681	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	2	0	2	0	multi-exon	TRUE	canonical	3	59	junction_6	22.3469853694417	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779939	20785603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ES_00057884	chr9	+	1637	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	33	0	33	0	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799503	20803474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ES_00057885	chr9	+	3929	1	FSM	ENSMUSG00000004100.13	ENSMUST00000145231.3	3914	1	-15	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799545	20803474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20799500_20803500
ES_00057886	chr9	+	824	2	FSM	ENSMUSG00000004100.13	ENSMUST00000153227.2	528	2	-296	0	-296	0	multi-exon	FALSE	canonical	3	890	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGTTTTGGTGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	20801637	20802650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20802012_20802200
ES_00057887	chr9	+	1343	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	-63	8	-63	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20913970	20920127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ES_00057888	chr9	+	2317	5	FSM	ENSMUSG00000003299.11	ENSMUST00000213977.2	2317	5	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_4	55.0244263941025	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914251	20920127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122
ES_00057889	chr9	+	2535	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGAGTTTGTGTACAG	NA	False	NA	16	True	AATAAA	-21	NA	20927280	20940113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
ES_00057890	chr9	+	971	3	FSM	ENSMUSG00000001014.7	ENSMUST00000001040.7	971	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTTACGGTTCTTG	NA	False	NA	NA	False	AATAAA	-15	NA	20940668	20941891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20941120_20941232_20941539_20941677
ES_00057891	chr9	+	3599	14	FSM	ENSMUSG00000032177.18	ENSMUST00000131769.8	3594	14	-5	0	-5	0	multi-exon	FALSE	canonical	3	11	junction_10	5.7594789376415	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTGAAACACATCAGCT	1159	False	NA	NA	False	NA	NA	NA	21092906	21122923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21093117_21102622_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
ES_00057892	chr9	+	4364	15	NIC	ENSMUSG00000032177.18	novel	3594	14	NA	NA	-28	-3	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	5.62429133857986	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCATTTGTTTCCTGGG	1136	False	NA	3	True	ATTAAA	-44	NA	21092883	21124541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21093117_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
ES_00057893	chr9	+	1939	3	FSM	ENSMUSG00000097439.7	ENSMUST00000181222.7	2077	3	58	80	26	-80	multi-exon	FALSE	canonical	1	1	junction_2	0.5	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGACCTAGCAAGCATAG	5214	False	NA	NA	False	NA	NA	NA	21136724	21143855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21136773_21137241_21137315_21142037
ES_00057894	chr9	+	5951	10	FSM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_8	36.048663953599	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGTCCTTGATGACATTT	8634	False	NA	NA	False	AATAAA	-25	NA	21176588	21189068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
ES_00057895	chr9	+	445	3	FSM	ENSMUSG00000002820.7	ENSMUST00000217269.2	445	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	243.5	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACTTTGTATCTCGACTA	8865	False	NA	NA	False	NA	NA	NA	21176819	21178223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21177014_21177888_21178119_21178202
ES_00057896	chr9	+	839	1	FSM	ENSMUSG00000002820.7	ENSMUST00000215767.2	1204	1	448	-83	230	83	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATGTGGTGTGGCATGG	9095	False	NA	NA	False	NA	NA	NA	21177049	21177888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21177000_21177900
ES_00057897	chr9	+	3651	20	NNC	ENSMUSG00000032178.15	novel	3684	19	NA	NA	-81751	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	560.214887540135	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCCCTCCGTACTTGA	669	False	NA	21	True	AATACA	-10	NA	21197415	21313088	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21197452_21279317_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ES_00057898	chr9	+	4129	22	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	-14	0	intron_retention	FALSE	canonical	3	72	junction_21	46.6520385236562	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	6607	False	NA	16	True	AATAAA	-16	NA	21232020	21266321	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
ES_00057899	chr9	+	3481	22	FSM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	-3	0	-3	0	multi-exon	FALSE	canonical	3	79	junction_1	41.7821257447013	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	6577	False	NA	19	True	AATAAA	-19	NA	21231990	21266324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
ES_00057900	chr9	+	3480	22	FSM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	-24	0	-24	0	multi-exon	FALSE	canonical	3	114	junction_21	32.3776608971381	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	5712	False	NA	16	True	AATAAA	-16	NA	21249099	21266321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
ES_00057901	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279166	21316656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ES_00057902	chr9	+	4687	18	FSM	ENSMUSG00000032178.15	ENSMUST00000214217.2	4679	18	-8	0	0	0	multi-exon	FALSE	canonical	3	922	junction_17	386.209805469554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCCCTCCGTACTTGA	NA	False	NA	21	True	AATACA	-10	NA	21279233	21313088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ES_00057903	chr9	+	3701	19	FSM	ENSMUSG00000032178.15	ENSMUST00000216892.2	3684	19	-17	0	0	0	multi-exon	FALSE	canonical	3	922	junction_18	377.751077487821	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCCTCCGTACTTGAGT	NA	False	NA	23	True	AATACA	-12	NA	21279233	21313090	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ES_00057904	chr9	+	3513	21	FSM	ENSMUSG00000032178.15	ENSMUST00000213518.2	3513	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	555.681284550776	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTGTCTCAGGCCTGG	NA	False	NA	116	True	AATAAA	-14	NA	21279233	21316657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315479_21315991
ES_00057905	chr9	+	3374	21	NNC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	533.927642569665	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279269	21316656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
ES_00057907	chr9	+	3606	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_17	371.198684895057	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTTGAGTCTTCATTCA	NA	False	NA	32	True	AATACA	-21	NA	21279298	21313099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ES_00057915	chr9	+	1340	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	-38	14	-38	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTGTTTTCATTTAAG	2331	False	NA	28	True	TATAAA	-14	NA	21323094	21331556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ES_00057918	chr9	+	3534	21	FSM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	-24	0	0	0	multi-exon	FALSE	canonical	2	185	junction_20	132.122244531343	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5842	False	NA	18	True	AATAAA	-28	NA	21336203	21418434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ES_00057919	chr9	+	732	3	FSM	ENSMUSG00000033335.18	ENSMUST00000174828.2	608	3	-60	-64	0	64	multi-exon	FALSE	canonical	3	9	junction_1	347.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTGGGTCCCCTCCCTG	5842	False	NA	NA	False	NA	NA	NA	21336203	21379060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21336553_21376877_21377028_21378827
ES_00057920	chr9	+	3501	20	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	224	junction_13	132.11218266634	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5866	False	NA	18	True	AATAAA	-28	NA	21336227	21418434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ES_00057921	chr9	+	3498	20	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	185	junction_19	149.780670673753	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5866	False	NA	18	True	AATAAA	-28	NA	21336227	21418434	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ES_00057922	chr9	+	3017	20	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	2	156	junction_19	153.943760641486	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGCAGATGTGTCTCCT	5880	False	NA	19	True	AATAAA	-20	NA	21336241	21419054	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ES_00057923	chr9	+	2454	12	FSM	ENSMUSG00000033335.18	ENSMUST00000172763.8	1772	12	-682	0	-682	0	multi-exon	FALSE	canonical	3	156	junction_11	156.302630805416	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCAGATGTGTCTCCTT	NA	False	NA	20	True	AATAAA	-21	NA	21390932	21419055	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ES_00057924	chr9	+	3413	15	FSM	ENSMUSG00000032185.16	ENSMUST00000115395.10	3152	15	-261	0	-242	0	multi-exon	FALSE	canonical	3	70	junction_14	283.604972827073	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCAGGGTCCAAGAATC	NA	False	NA	40	True	AATAAA	-42	NA	21457947	21500783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499344
ES_00057925	chr9	+	3595	15	FSM	ENSMUSG00000032185.16	ENSMUST00000115394.8	3320	15	-255	-20	-226	0	multi-exon	FALSE	canonical	3	1025	junction_5	69.6438461468237	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCAGGGTCCAAGAATC	NA	False	NA	40	True	AATAAA	-42	NA	21457963	21500783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146
ES_00057926	chr9	+	3220	16	FSM	ENSMUSG00000032185.16	ENSMUST00000034703.15	3220	16	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_5	67.5234938537856	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458189	21500763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146_21499216_21499344
ES_00057927	chr9	+	3585	14	FSM	ENSMUSG00000032185.16	ENSMUST00000154049.8	3585	14	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_5	70.328224573052	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458218	21500763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803
ES_00057930	chr9	+	3157	2	FSM	ENSMUSG00000048429.11	ENSMUST00000062125.11	3170	2	0	13	0	-13	multi-exon	FALSE	canonical	3	163	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCACCCTCCATTACTG	4511	False	NA	21	True	ATTAAA	-30	NA	21504017	21507253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21504367_21504445
ES_00057931	chr9	+	6354	34	FSM	ENSMUSG00000032187.17	ENSMUST00000034707.15	6354	34	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_28	87.1904283674422	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTTGCCTTGGTTCTGTG	1237	False	NA	NA	False	AATAAA	-7	NA	21527464	21615513	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00057932	chr9	+	5481	34	NNC	ENSMUSG00000032187.17	novel	5405	34	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_13	151.928599536784	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1253	False	NA	22	True	AATAAA	-19	NA	21527480	21614662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566925_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00057933	chr9	+	5417	34	NNC	ENSMUSG00000032187.17	novel	5405	34	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	138.291543357457	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1332	False	NA	22	True	AATAAA	-19	NA	21527559	21614662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590443_21597307_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00057934	chr9	+	5405	34	FSM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_29	114.960846930185	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1332	False	NA	22	True	AATAAA	-19	NA	21527559	21614662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00057935	chr9	+	5404	34	NNC	ENSMUSG00000032187.17	novel	6354	34	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_13	133.434919978262	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1333	False	NA	22	True	AATAAA	-19	NA	21527560	21614662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566925_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00057936	chr9	+	4618	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	4	5	4	0	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACTTTGTCATCCTTAT	1777	False	NA	11	True	ATTAAA	-10	NA	21634782	21661210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
ES_00057937	chr9	+	2827	10	FSM	ENSMUSG00000032193.10	ENSMUST00000217111.2	2854	10	0	27	0	-27	multi-exon	FALSE	canonical	3	262	junction_7	24.2807651352991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACTCACATTAAATAAAT	1929	False	NA	NA	False	NA	NA	NA	21634934	21652271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944
ES_00057939	chr9	+	267	1	Intergenic	novelGene_4080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCTGAACACAAATTTCC	6570	False	NA	NA	False	NA	NA	NA	21702193	21702460	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_21702200_21702500
ES_00057940	chr9	+	2640	10	FSM	ENSMUSG00000040563.14	ENSMUST00000046371.13	2626	10	-14	0	-14	0	multi-exon	TRUE	canonical	3	9	junction_8	8.89999306422257	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTGGCCTTCTGCCTG	83	False	NA	NA	False	AATAAA	-16	NA	21848314	21860200	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858365_21858676_21858729_21858899
ES_00057941	chr9	+	2487	9	FSM	ENSMUSG00000040563.14	ENSMUST00000190387.7	2608	9	121	0	-58	0	multi-exon	FALSE	canonical	3	12	junction_7	8.88467782195843	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCCTTCTGCCTGCCT	1459	False	NA	NA	False	AATAAA	-19	NA	21849690	21860203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858349_21858676_21858729_21858899
ES_00057942	chr9	+	2243	3	NNC	ENSMUSG00000051238.7	novel	1838	2	NA	NA	-428	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	36	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21866622	21869560	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21867301_21867972_21869149_21869171
ES_00057943	chr9	+	1843	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	-5	0	-5	0	multi-exon	FALSE	canonical	3	72	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867045	21869560	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21867301_21867972
ES_00057944	chr9	+	2228	18	FSM	ENSMUSG00000003402.15	ENSMUST00000216344.2	2228	18	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	191.361611709314	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914101	21925518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ES_00057945	chr9	+	2012	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_11	125.012497645132	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914313	21925518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ES_00057946	chr9	+	2008	18	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_11	210.276996423559	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914314	21925518	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922972_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ES_00057947	chr9	+	1985	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	0	-2	0	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914361	21925518	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ES_00057949	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068141	22069654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22068210_22069027
ES_00057950	chr9	+	1329	3	FSM	ENSMUSG00000109765.3	ENSMUST00000211082.3	1468	3	2	137	2	-137	multi-exon	FALSE	canonical	1	2	junction_1	0	841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGTGTGTGTATA	7750	False	NA	NA	False	AATAAA	-14	NA	22078776	22081811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22078904_22079092_22079151_22080667
ES_00057951	chr9	+	5471	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	-47	-3658	-38	-3	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTGCCTTGGTTGTGTT	702	False	NA	11	True	NA	NA	NA	22136971	22154647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
ES_00057952	chr9	+	1463	6	NNC	ENSMUSG00000057982.9	novel	1425	6	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	67.2577133123035	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAAGTTGCCTTGGTTGT	749	False	NA	8	True	NA	NA	NA	22137018	22154644	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149841_22150550_22154329
ES_00057953	chr9	+	5247	5	NNC	ENSMUSG00000057982.9	novel	1425	6	NA	NA	2	0	intron_retention	FALSE	canonical	2	3	junction_4	61.6578259428598	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	751	False	NA	14	True	NA	NA	NA	22137020	22154650	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149841
ES_00057954	chr9	+	1313	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGACAGACTAAATAATGC	778	False	NA	NA	False	NA	NA	NA	22137047	22150739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
ES_00057956	chr9	+	3466	1	FSM	ENSMUSG00000111424.2	ENSMUST00000213592.2	2325	1	-1028	-113	-1028	113	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGCCACGGCAAACTTTA	2976	False	NA	NA	False	NA	NA	NA	22139245	22142711	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22139200_22142700
ES_00057957	chr9	+	2200	7	FSM	ENSMUSG00000036411.11	ENSMUST00000058868.9	2223	7	17	6	17	4	multi-exon	FALSE	canonical	2	6	junction_3	3.62476052848859	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAACTTTTTGTTCAGTT	NA	False	NA	NA	False	ATTAAA	-8	NA	22322825	22355971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22323046_22335408_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
ES_00057958	chr9	+	3626	22	FSM	ENSMUSG00000035919.17	ENSMUST00000147712.8	3495	22	-131	0	-115	0	multi-exon	FALSE	canonical	3	19	junction_1	15.2048745018425	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22386895	22799570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22387487_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ES_00057960	chr9	+	3479	22	FSM	ENSMUSG00000035919.17	ENSMUST00000039798.16	3382	22	-103	6	-103	0	multi-exon	FALSE	canonical	3	30	junction_1	13.43515542748	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22386907	22799570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22387352_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ES_00057962	chr9	+	3573	23	NIC	ENSMUSG00000035919.17	novel	3425	23	NA	NA	2	2	intron_retention	FALSE	canonical	3	12	junction_1	19.496609156339	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGACTGAATTTATAACC	NA	False	NA	5	True	AATAAA	-22	NA	22387012	22799578	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_22387487_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ES_00057963	chr9	+	230	1	ISM	ENSMUSG00000001833.18	ENSMUST00000115272.9	2533	14	31	55872	19	-13082	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCTCAGCCCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	25163765	25163995	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_25163800_25164000
ES_00057964	chr9	+	248	2	FSM	ENSMUSG00000001833.18	ENSMUST00000214911.2	532	2	-1	285	-1	-285	multi-exon	FALSE	canonical	2	295	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATGATTTCTTACTAA	NA	False	NA	NA	False	NA	NA	NA	25175358	25176792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_25175504_25176689
ES_00057965	chr9	+	2403	13	ISM	ENSMUSG00000001833.18	ENSMUST00000165594.4	2516	14	11621	-5	8	0	3prime_fragment	FALSE	canonical	2	295	junction_1	303.687979493573	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTTGTATATTCT	NA	False	NA	22	True	AATAAA	-22	NA	25175367	25219867	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_25175504_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ES_00057967	chr9	+	269	1	FSM	ENSMUSG00000001833.18	ENSMUST00000214360.2	2251	1	0	1982	0	1470	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGATCTCTACATATAAC	NA	False	NA	NA	False	NA	NA	NA	25216564	25216833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_25216600_25216800
ES_00057968	chr9	+	2746	8	FSM	ENSMUSG00000036611.6	ENSMUST00000040677.6	2723	8	-23	0	-23	0	multi-exon	FALSE	canonical	3	10	junction_4	5.11101251999952	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGAGTGTGGAATGGTTT	NA	False	NA	15	True	AATAAA	-23	NA	25392819	25515406	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_25393193_25393576_25394616_25458847_25458900_25493187_25493299_25497957_25498093_25500730_25500870_25505856_25506052_25514704
ES_00057969	chr9	+	774	5	FSM	ENSMUSG00000035443.11	ENSMUST00000214910.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	235.013829380315	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTATCATTGAGTTTTA	NA	False	NA	3	True	AATAAA	-17	NA	26911005	26917227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852
ES_00057970	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ES_00057971	chr9	+	930	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	-12	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911005	26918630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ES_00057974	chr9	+	5499	36	FSM	ENSMUSG00000035024.17	ENSMUST00000073127.14	5499	36	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	46.2265053396681	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTAGCATTTATTATA	NA	False	NA	NA	False	AATAAA	-15	NA	26941470	27006607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26941796_26941918_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ES_00057975	chr9	+	5149	35	FSM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_3	21.5907395566265	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTAGCATTTATTATAA	NA	False	NA	NA	False	AATAAA	-16	NA	26941944	27006608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ES_00057976	chr9	+	6732	35	NIC	ENSMUSG00000035024.17	novel	5149	35	NA	NA	79	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_24	41.1214338069467	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTAGCATTTATTATAA	NA	False	NA	NA	False	AATAAA	-16	NA	26942023	27006608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26985761_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ES_00057977	chr9	+	2077	12	FSM	ENSMUSG00000035024.17	ENSMUST00000214432.2	2077	12	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	64.5578733251372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGCATTTATTATAATTT	NA	False	NA	NA	False	AATAAA	-19	NA	26985628	27006611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26985761_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ES_00057978	chr9	+	1484	9	ISM	ENSMUSG00000034275.19	ENSMUST00000115247.8	2857	15	-7	7378	-7	-7378	5prime_fragment	FALSE	canonical	3	17	junction_4	3.30718913883074	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCCCCAGGACTGTGC	NA	False	NA	NA	False	NA	NA	NA	27210516	27234053	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912
ES_00057979	chr9	+	2258	6	FSM	ENSMUSG00000034275.19	ENSMUST00000214187.2	2288	6	0	30	0	-30	multi-exon	FALSE	canonical	2	6	junction_3	2.87054001888146	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGTAAGCCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	27238235	27246029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_27238318_27239775_27240003_27240834_27240920_27242946_27243109_27243797_27243844_27244373
ES_00057980	chr9	+	8761	1	ISM	ENSMUSG00000034275.19	ENSMUST00000214357.2	16144	20	49582	0	21846	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTCCTATGTTTTTT	NA	False	NA	10	True	AATAAA	-15	NA	27260081	27268842	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_27260100_27268800
ES_00057981	chr9	+	5823	11	FSM	ENSMUSG00000031993.8	ENSMUST00000164099.3	5762	11	-53	-8	-53	1	multi-exon	TRUE	canonical	3	26	junction_9	7.52927619363243	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGTGATTTTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	30338350	30378030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30373526_30373712_30374515_30374604_30375581
ES_00057982	chr9	+	3631	9	FSM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_2	5.53257399408268	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGTCTAGTCTGGTT	NA	False	NA	NA	False	ACTAAA	-18	NA	30853857	30874152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_30854898_30862561_30862802_30863890_30864027_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
ES_00057983	chr9	+	9147	6	FSM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	-286	0	-284	0	multi-exon	FALSE	canonical	3	240	junction_5	55.0694107468021	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGTTGTTGTCATTG	NA	False	NA	83	True	ATTAAA	-28	NA	30941655	30987181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
ES_00057984	chr9	+	9364	6	NIC	ENSMUSG00000047412.17	novel	8861	6	NA	NA	-284	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_5	107.784971123065	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGTTGTTGTCATTG	NA	False	NA	83	True	ATTAAA	-28	NA	30941655	30987181	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978256_30980040
ES_00057985	chr9	+	3601	6	NIC	ENSMUSG00000047412.17	novel	3157	6	NA	NA	-242	-15	combination_of_known_junctions	FALSE	canonical	3	75	junction_3	133.52992174041	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAGCCACGAGTAAT	NA	False	NA	17	True	ATTAAA	-20	NA	30941697	30981514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_30942255_30964535_30965610_30973336_30973422_30975528_30975639_30977954_30978256_30980040
ES_00057986	chr9	+	3157	6	FSM	ENSMUSG00000047412.17	ENSMUST00000216649.2	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	111.276951791465	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGAACTTTTGTGTAAT	NA	False	NA	32	True	ATTAAA	-35	NA	30941939	30981529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975528_30975639_30977954_30978039_30980040
ES_00057988	chr9	+	1533	1	FSM	ENSMUSG00000081343.2	ENSMUST00000119589.2	793	1	-727	-13	-727	13	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTTTCTGTATATAAAC	NA	False	NA	NA	False	AAAAAG	-44	NA	31004770	31006303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_31004800_31006300
ES_00057989	chr9	+	1952	7	FSM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.53688586293873	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGAGCATTCTTGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	31191833	31241914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957
ES_00057990	chr9	+	6880	22	NIC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	25	junction_21	7.64460000896398	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTCTTGTGCATGT	NA	False	NA	NA	False	AATAAA	-18	NA	31191833	31293027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957_31241162_31246612_31246686_31248600_31248719_31251625_31251756_31252537_31252781_31258088_31258437_31260407_31260564_31264582_31264763_31265770_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31289635
ES_00057992	chr9	+	5208	26	NIC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	9.17387595294377	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGGCCTTTAATCATT	NA	False	NA	6	True	ATTAAA	-14	NA	31297476	31332629	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308295_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
ES_00057994	chr9	+	5414	26	FSM	ENSMUSG00000042185.15	ENSMUST00000132329.8	5398	26	-16	0	-11	0	multi-exon	FALSE	canonical	2	9	junction_5	14.7460638815923	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGGCCTTTAATCATT	NA	False	NA	6	True	ATTAAA	-14	NA	31297476	31332629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308089_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
ES_00057995	chr9	+	9866	22	NNC	ENSMUSG00000041444.15	novel	540	6	NA	NA	-20310	522	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	8.00340063777314	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTATGTGTTTCCTT	NA	False	NA	17	True	NA	NA	NA	32007121	32176063	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_32007215_32040865_32040975_32063217_32063310_32064335_32064421_32081385_32081473_32093137_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479_32119562_32150557_32150708_32156447_32156551_32157213_32157359_32157742_32157826_32158403_32158512_32158781_32158928_32159675_32159872_32161937_32162084_32165362_32165435_32166469_32167355_32168008_32168995_32170197
ES_00057996	chr9	+	516	5	FSM	ENSMUSG00000041444.15	ENSMUST00000174314.2	543	5	0	27	0	-27	multi-exon	FALSE	canonical	3	30	junction_4	4.38748219369606	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTTTTGCTTGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	32093206	32119632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479
ES_00057998	chr9	+	1288	1	FSM	ENSMUSG00000070315.13	ENSMUST00000214597.2	3557	1	342	1927	-318	114	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTTTTTTTTCTTCTTT	NA	False	NA	NA	False	CATAAA	-16	NA	35028391	35029679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_35028400_35029700
ES_00058008	chr9	+	2133	4	FSM	ENSMUSG00000042138.10	ENSMUST00000214298.2	423	4	-279	-1431	0	0	multi-exon	FALSE	canonical	3	84	junction_1	69.0909223817106	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	397	False	NA	NA	False	TTTAAA	-5	NA	37400616	37435444	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
ES_00058009	chr9	+	5944	4	NIC	ENSMUSG00000042138.10	novel	2291	4	NA	NA	0	50	intron_retention	FALSE	canonical	3	44	junction_1	87.9406365428154	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTTTGTAGCGGAGTG	397	False	NA	NA	False	NA	NA	NA	37400616	37435496	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_37401130_37424909_37428769_37430022_37430084_37433985
ES_00058015	chr9	+	4825	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	117	5	-40	-5	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37525082	37560946	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
ES_00058016	chr9	+	576	1	FSM	ENSMUSG00000059252.6	ENSMUST00000112150.4	516	1	14	-74	14	74	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGGACAGATGTCATCT	NA	False	NA	NA	False	NA	NA	NA	37607824	37608400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37607800_37608400
ES_00058018	chr9	+	4138	20	FSM	ENSMUSG00000023186.15	ENSMUST00000001544.12	4157	20	19	0	15	0	multi-exon	TRUE	canonical	2	10	junction_6	2.97449918967259	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAAACTTTGTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	38629582	38654633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_38629684_38630553_38630630_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
ES_00058024	chr9	+	1163	4	FSM	ENSMUSG00000015656.18	ENSMUST00000140984.2	1152	4	-11	0	0	0	multi-exon	FALSE	canonical	3	7746	junction_3	4392.46182554714	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGCTGGACAAGTCACAG	2459	False	NA	NA	False	NA	NA	NA	40712571	40714675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_40712645_40713213_40713424_40713713_40714188_40714269
ES_00058025	chr9	+	3158	4	FSM	ENSMUSG00000015656.18	ENSMUST00000149936.2	3158	4	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_2	5585.07877195021	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTTGTCCTGACTGAG	2459	False	NA	9	True	AATAAA	-19	NA	40712571	40716495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269
ES_00058030	chr9	+	201	1	Intergenic	novelGene_4117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTCTTAATGCCAAGTC	NA	False	NA	NA	False	NA	NA	NA	43388909	43389110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_43388900_43389100
ES_00058033	chr9	+	1738	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTGTCTGTCTCTTCT	NA	False	NA	34	True	AATAAA	-20	NA	43954677	43959876	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
ES_00058036	chr9	+	2079	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	-22	0	-22	0	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTTTGGGTTCTCAAAA	2226	False	NA	NA	False	NA	NA	NA	43996213	44005774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ES_00058039	chr9	+	380	2	Antisense	novelGene_ENSMUSG00000034342.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	204	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTCTCAAGCAGGGAA	7758	False	NA	NA	False	NA	NA	NA	44055736	44056158	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_44055967_44056008
ES_00058040	chr9	+	2527	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	-227	-95	54	95	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGAGGCAGGCTGATCT	3547	False	NA	NA	False	TTTAAA	-29	NA	44237914	44245292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ES_00058041	chr9	+	1387	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	-3	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	497	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5250	False	NA	34	True	ATTAAA	-30	NA	44245987	44247374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44246000_44247400
ES_00058042	chr9	+	220	2	Intergenic	novelGene_4119	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	895	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAATAAAAAAATATTTTTA	NA	False	NA	NA	False	NA	NA	NA	44287966	44289042	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_44288082_44288937
ES_00058043	chr9	+	4427	26	FSM	ENSMUSG00000032115.15	ENSMUST00000066601.13	4432	26	-1	6	-1	0	multi-exon	TRUE	canonical	3	476	junction_1	89.8853847964173	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTATGTGTTTGCTTCTT	NA	False	NA	1	True	AATAAA	-17	NA	44290785	44303660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ES_00058045	chr9	+	561	6	FSM	ENSMUSG00000032115.15	ENSMUST00000217019.2	561	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	327.737089753357	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTACTCCCGTTCCTTGG	NA	False	NA	NA	False	NA	NA	NA	44290880	44292852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44290974_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810
ES_00058047	chr9	+	4635	26	FSM	ENSMUSG00000032115.15	ENSMUST00000160902.8	3374	26	0	-1261	0	0	multi-exon	FALSE	canonical	3	130	junction_1	146.389890361322	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTATGTGTTTGCTTCTT	NA	False	NA	1	True	AATAAA	-17	NA	44290919	44303660	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44291235_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ES_00058050	chr9	+	1278	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	0	2	0	-2	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	2159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTGGACATTTATTCAT	NA	False	NA	45	True	NA	NA	NA	44318435	44321722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ES_00058051	chr9	+	1116	1	FSM	ENSMUSG00000009927.10	ENSMUST00000213116.2	1116	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATAAGCTTATTACTCC	NA	False	NA	NA	False	NA	NA	NA	44318956	44320072	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44319000_44320100
ES_00058052	chr9	+	428	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216076.2	393	4	-35	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5446.48059657692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGGGTGCATCTGTTTC	NA	False	NA	92	True	AATAAA	-17	NA	44318956	44321489	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44319055_44319982_44320167_44321250_44321350_44321442
ES_00058053	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	829.827692958002	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318993	44321486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
ES_00058054	chr9	+	719	4	FSM	ENSMUSG00000009927.10	ENSMUST00000215610.2	703	4	-16	0	0	0	multi-exon	FALSE	canonical	3	5317	junction_3	3495.27194936245	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44318993	44321491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44319381_44319982_44320167_44321250_44321350_44321442
ES_00058057	chr9	+	209	2	Antisense	novelGene_ENSMUSG00000047880.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACCAAATTCAGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	44451692	44489904	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_44451731_44489733
ES_00058062	chr9	+	479	1	NIC	ENSMUSG00000002031.14	novel	771	6	NA	NA	-1048	-2075	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCACCACCACGCCCAG	9922	False	NA	NA	False	NA	NA	NA	44683158	44683637	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_44683200_44683600
ES_00058063	chr9	+	1617	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	-243	-315	0	0	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCTCATTAGTGTC	NA	False	NA	10	True	AATACA	-19	NA	44684206	44702192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ES_00058065	chr9	+	678	5	FSM	ENSMUSG00000032094.9	ENSMUST00000034602.9	1617	5	7	932	7	-14	multi-exon	FALSE	canonical	1	3	junction_2	2.48746859276655	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTCCGTCGGCAGGCG	NA	False	NA	NA	False	AATAAA	-5	NA	44893090	44897705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44893239_44896267_44896487_44896901_44897034_44897354_44897399_44897570
ES_00058066	chr9	+	3312	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	-205	0	-205	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953517	44965313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
ES_00058068	chr9	+	1798	2	ISM	ENSMUSG00000037129.8	ENSMUST00000034597.8	3245	13	26069	2	26069	-2	3prime_fragment	FALSE	canonical	3	10	junction_1	0	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTGGGTGCTTC	NA	False	NA	NA	False	AATAAA	-14	NA	45256466	45258877	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_45256677_45257289
ES_00058070	chr9	+	1956	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	-167	0	-167	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	201	False	NA	22	True	AATAAA	-26	NA	45281315	45307457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ES_00058073	chr9	+	365	5	FSM	ENSMUSG00000032086.13	ENSMUST00000159499.2	365	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	8.97217922246318	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGAGTGGTATTATGAAGT	7958	False	NA	NA	False	NA	NA	NA	45750537	45768471	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45750587_45764185_45764275_45765924_45765954_45767385_45767524_45768411
ES_00058075	chr9	+	940	1	FSM	ENSMUSG00000035382.10	ENSMUST00000215535.2	935	1	-23	18	20	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTGGACCACAGGGAG	NA	False	NA	NA	False	NA	NA	NA	45817814	45818754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45817800_45818800
ES_00058076	chr9	+	3856	17	FSM	ENSMUSG00000035382.10	ENSMUST00000039059.8	3876	17	20	0	20	0	multi-exon	FALSE	canonical	3	28	junction_7	6.25	1792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACAAGTCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	45817814	45841010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
ES_00058078	chr9	+	231	1	Intergenic	novelGene_4124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAAGCTCAGGTCAA	1768	False	NA	NA	False	NA	NA	NA	45870660	45870891	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_45870700_45870900
ES_00058080	chr9	+	2655	14	ISM	ENSMUSG00000034135.16	ENSMUST00000120463.9	4180	24	-44	19396	0	-6	5prime_fragment	FALSE	canonical	3	79	junction_9	9.59474708356782	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGGCTCTCGGGGAAAC	NA	False	NA	0	True	AATAAA	-8	NA	45924117	46114177	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_45924429_46034514_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
ES_00058081	chr9	+	2404	12	NNC	ENSMUSG00000034135.16	novel	5465	21	NA	NA	-4531	10	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	29.1176013906332	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTGGGTGTTTTTATC	8724	False	NA	16	True	AATAAA	-24	NA	46062145	46114193	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_46062371_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
ES_00058089	chr9	+	2068	11	FSM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	58	0	-37	0	multi-exon	FALSE	canonical	3	105	junction_9	77.3110600108419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	47441612	47762327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
ES_00058091	chr9	+	2384	7	FSM	ENSMUSG00000032076.21	ENSMUST00000151624.2	1112	7	-21	-1251	0	1251	multi-exon	FALSE	canonical	3	300	junction_2	18.6904610251682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCAAACGTCTAGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	47441649	47726603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070
ES_00058092	chr9	+	1505	9	ISM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	141	20814	0	-4675	5prime_fragment	FALSE	canonical	3	173	junction_8	54.4885309033011	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTCCAGGACTCACCAG	NA	False	NA	NA	False	ATTAAA	-45	NA	47441649	47741071	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674
ES_00058094	chr9	+	384	1	FSM	ENSMUSG00000063543.6	ENSMUST00000165252.3	384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCCGTAGCCTCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	48361699	48362083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_48361700_48362100
ES_00058098	chr9	+	4133	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896764	48953810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ES_00058106	chr9	+	842	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	-8	2	-8	-2	multi-exon	FALSE	canonical	2	5	junction_1	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCCTCGTGTTTGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	50664311	50667934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
ES_00058109	chr9	+	2530	14	FSM	ENSMUSG00000032059.14	ENSMUST00000162073.8	2530	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	42.7472273227982	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATGTTTCAGTCTGCT	NA	False	NA	38	True	TTTAAA	-45	NA	50686604	50754842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
ES_00058112	chr9	+	3247	16	NNC	ENSMUSG00000032058.15	novel	3430	15	NA	NA	0	9473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	150.568552124568	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCATAAGAATAAAACTACTA	7	True	NA	NA	False	NA	NA	NA	50768256	50815002	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138_50792539_50814972
ES_00058114	chr9	+	1502	11	FSM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	286.507521716272	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGGTTGTCTTGTAA	NA	False	NA	NA	False	AATAAA	-23	NA	51959570	51986474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51986284
ES_00058120	chr9	+	1625	2	FSM	ENSMUSG00000042195.10	ENSMUST00000216515.2	1685	2	60	0	60	0	multi-exon	FALSE	canonical	3	167	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53718060	53725438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_53718314_53724066
ES_00058123	chr9	+	2517	2	FSM	ENSMUSG00000032279.12	ENSMUST00000213729.2	2517	2	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCAATTC	NA	False	NA	NA	False	NA	NA	NA	54493793	54499624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_54493828_54497141
ES_00058125	chr9	+	801	5	NNC	ENSMUSG00000032291.9	novel	802	4	NA	NA	-177	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	128.69440547281	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	18	True	ATTAAA	-14	NA	54671854	54680394	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_54671931_54672108_54672256_54672766_54672946_54675667_54675782_54680109
ES_00058130	chr9	+	1936	6	FSM	ENSMUSG00000032301.14	ENSMUST00000169008.8	562	6	-20	-1354	-5	0	multi-exon	FALSE	canonical	3	1724	junction_4	75.8957179292745	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTATTTTCGTGCCAC	NA	False	NA	NA	False	NA	NA	NA	54858068	54863670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164
ES_00058133	chr9	+	1209	10	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	-2	16245	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	591.649065987559	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAGAAAAGGAGAGAGCCA	NA	False	NA	NA	False	NA	NA	NA	54858071	54881559	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918_54865322_54881524
ES_00058135	chr9	+	1086	7	FSM	ENSMUSG00000032301.14	ENSMUST00000171900.2	768	7	-318	0	-4	0	multi-exon	FALSE	canonical	3	9	junction_1	697.856420285243	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCACTATGGCTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	54858069	54863583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_54858713_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540
ES_00058138	chr9	+	1680	12	FSM	ENSMUSG00000032307.17	ENSMUST00000121677.8	1680	12	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_2	214.811583786642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGGTTTAGAAATTTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	55056678	55113683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_55057111_55070251_55070354_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
ES_00058140	chr9	+	2204	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	-202	7	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTCAACTGGTGTTGTA	NA	False	NA	2	True	AATAAA	-9	NA	55116271	55131708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ES_00058143	chr9	+	657	2	FSM	ENSMUSG00000032320.8	ENSMUST00000151585.2	1987	2	-29	1359	-4	-1359	multi-exon	FALSE	canonical	3	391	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGGTATGTAAATGTT	944	False	NA	NA	False	AGTAAA	-9	NA	55949124	55950151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_55949489_55949858
ES_00058146	chr9	+	2213	9	FSM	ENSMUSG00000032329.5	ENSMUST00000215269.2	1700	9	-42	-471	-7	471	multi-exon	FALSE	canonical	3	179	junction_3	23.7276210354093	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGTAGATGGCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	56325885	56398080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105
ES_00058147	chr9	+	3785	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	-7	0	-7	0	multi-exon	FALSE	canonical	3	83	junction_9	43.8482230730809	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTGACCAGTTTTGCT	NA	False	NA	11	True	ATTAAA	-17	NA	56325885	56404220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
ES_00058148	chr9	+	2472	8	FSM	ENSMUSG00000032329.5	ENSMUST00000217518.2	2468	8	-4	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.8160580006954	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGTTCTCAGAACA	NA	False	NA	NA	False	NA	NA	NA	56326103	56397565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897
ES_00058155	chr9	+	5228	22	FSM	ENSMUSG00000042557.15	ENSMUST00000168678.8	5206	22	-22	0	-22	0	multi-exon	FALSE	canonical	3	44	junction_1	78.0412705515297	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56983637	57035648	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_56983915_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00058156	chr9	+	5174	21	NIC	ENSMUSG00000042557.15	novel	5206	22	NA	NA	-76	0	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	51.8689454298041	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56983583	57035648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00058157	chr9	+	5277	22	NNC	ENSMUSG00000042557.15	novel	5206	22	NA	NA	-76	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	83.7927743003137	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56983583	57035648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56983915_56988383_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00058158	chr9	+	5086	21	FSM	ENSMUSG00000042557.15	ENSMUST00000168177.8	5086	21	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	80.3800970390059	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAAGTCCCTTGTCCTC	NA	False	NA	NA	False	AATAAA	-24	NA	56983682	57035650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025456_57026376_57026472_57032452_57032661_57034431
ES_00058159	chr9	+	4845	20	FSM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	35.0166561080031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAAGTCCCTTGTCCTC	NA	False	NA	NA	False	AATAAA	-24	NA	56993864	57035650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00058161	chr9	+	888	5	NNC	ENSMUSG00000032295.16	novel	1977	4	NA	NA	-2	30312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	96.1015088331083	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAACCCACTTTTAATGA	NA	False	NA	NA	False	NA	NA	NA	57037971	57080318	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57041045_57080118
ES_00058162	chr9	+	1979	4	FSM	ENSMUSG00000032295.16	ENSMUST00000161696.2	1977	4	-2	0	0	0	multi-exon	FALSE	canonical	3	191	junction_2	25.4950975679639	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCGGGAAGGGAAGCATGA	NA	False	NA	NA	False	NA	NA	NA	57038051	57042415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805
ES_00058178	chr9	+	3037	5	FSM	ENSMUSG00000032305.16	ENSMUST00000114200.10	3017	5	-20	0	15	0	multi-exon	FALSE	canonical	0	0	junction_4	22.8582589013249	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTACTGTGCTGCA	NA	False	NA	14	True	AATAAA	-14	NA	57444825	57450467	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447937
ES_00058181	chr9	+	2818	16	FSM	ENSMUSG00000032308.10	ENSMUST00000053230.7	2826	16	8	0	8	0	multi-exon	FALSE	canonical	3	37	junction_2	6.816320284598	2457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATTTCTTCTTGCCTTGG	NA	False	NA	33	True	ATTAAA	-17	NA	57496742	57503516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
ES_00058183	chr9	+	312	4	FSM	ENSMUSG00000032308.10	ENSMUST00000215748.2	312	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	19.7540431867054	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTCCGTGGCTCCCCGC	NA	False	NA	NA	False	AAAACA	-1	NA	57497627	57499319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57497748_57498020_57498065_57498496_57498602_57499276
ES_00058187	chr9	+	4286	6	FSM	ENSMUSG00000038957.14	ENSMUST00000137245.8	4277	6	-9	0	6	0	multi-exon	FALSE	canonical	3	26	junction_2	95.7613700820952	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACAGTTGACAGGCCT	NA	False	NA	NA	False	NA	NA	NA	57615828	57658686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57615983_57620663_57620845_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ES_00058192	chr9	+	1451	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818290	57837251	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ES_00058193	chr9	+	488	4	FSM	ENSMUSG00000055720.11	ENSMUST00000214086.2	469	4	-19	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	120.985765921267	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGACCAGACCCTTGA	NA	False	NA	NA	False	NA	NA	NA	57818314	57821862	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57818455_57818999_57819109_57819920_57820134_57821836
ES_00058198	chr9	+	2244	8	FSM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	-8	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	134.059079269902	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160466	58169803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_58160683_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ES_00058199	chr9	+	1777	7	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	57	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	122.45498038962	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160531	58169803	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_58160561_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ES_00058201	chr9	+	2718	6	ISM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	800	0	-657	0	3prime_fragment	FALSE	canonical	3	282	junction_1	36.1861852092757	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58161246	58169803	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ES_00058202	chr9	+	4032	7	NNC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	-657	1557	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	130.729257968096	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTGTTTTTTTTTTT	NA	False	NA	21	True	NA	NA	NA	58161246	58171360	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928_58170481_58170723
ES_00058203	chr9	+	2941	7	ISM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	824	5	-605	-5	3prime_fragment	FALSE	canonical	3	65	junction_2	135.979982186922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATGGAGAAGTGCAGCT	NA	False	NA	6	True	AATAAA	-17	NA	58161298	58169798	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ES_00058206	chr9	+	864	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	-21	0	-21	0	multi-exon	FALSE	canonical	3	39	junction_1	1.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCTGATACTTGCT	NA	False	NA	16	True	NA	NA	NA	58362383	58376918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_58362640_58374083_58374201_58376427
ES_00058208	chr9	+	2139	3	FSM	ENSMUSG00000066607.6	ENSMUST00000085658.5	2139	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAACACAGTCATAATA	NA	False	NA	NA	False	NA	NA	NA	58395885	58407025	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_58396523_58396951_58397676_58406247
ES_00058213	chr9	+	2484	7	FSM	ENSMUSG00000025236.12	ENSMUST00000217570.2	2484	7	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_6	121.65205391699	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTAAGTCTAATTGATTT	NA	False	NA	18	True	ATTAAA	-19	NA	59198840	59223482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222013
ES_00058214	chr9	+	5148	6	FSM	ENSMUSG00000025236.12	ENSMUST00000214361.2	5148	6	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_5	128.284059804794	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAGTCTAATTGATTTT	NA	False	NA	19	True	ATTAAA	-20	NA	59198865	59223483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59220520_59221035_59221135_59222016
ES_00058216	chr9	+	2741	24	NNC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_19	15.1991194650933	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGTGGACTGGATATG	NA	False	NA	13	True	AATAAA	-7	NA	59524551	59557552	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59548990_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ES_00058217	chr9	+	2730	24	FSM	ENSMUSG00000025237.17	ENSMUST00000026267.16	2709	24	-21	0	-21	0	multi-exon	FALSE	canonical	3	6	junction_19	14.9962818328102	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATCACTGTGGTCTGAC	NA	False	NA	29	True	AATAAA	-23	NA	59524545	59557568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59549023_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ES_00058219	chr9	+	2572	22	NIC	ENSMUSG00000025237.17	novel	2484	23	NA	NA	-280	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_18	11.7937682918371	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59525674	59557550	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ES_00058220	chr9	+	791	3	FSM	ENSMUSG00000025237.17	ENSMUST00000217284.2	791	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCAGAAGCATGGGAA	1304	False	NA	NA	False	NA	NA	NA	59555479	59556815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59556193_59556572_59556637_59556801
ES_00058225	chr9	+	2041	11	FSM	ENSMUSG00000032294.18	ENSMUST00000163694.4	2041	11	0	0	0	0	multi-exon	FALSE	canonical	3	941	junction_8	6644.99062151332	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGACGACTTCTGGC	1869	False	NA	NA	False	GGGGCT	-26	NA	59563855	59586472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582311_59582479_59585326_59585509_59586010
ES_00058227	chr9	+	3887	1	FSM	ENSMUSG00000111394.2	ENSMUST00000214037.2	3887	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTAAGGCAGTGTTCATG	1788	False	NA	NA	False	NA	NA	NA	59580096	59583983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59580100_59584000
ES_00058236	chr9	+	4501	19	FSM	ENSMUSG00000034485.11	ENSMUST00000050183.7	4428	19	-73	0	-67	0	multi-exon	FALSE	canonical	3	41	junction_8	35.7857134056402	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGAGATGAGTGTGT	NA	False	NA	28	True	AATAAA	-29	NA	60701756	60787652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761786_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
ES_00058238	chr9	+	5155	20	FSM	ENSMUSG00000032280.17	ENSMUST00000034820.16	4646	20	-506	-3	-14	0	multi-exon	FALSE	canonical	3	85	junction_13	43.258483548224	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGATTGTTGTGTTTTA	NA	False	NA	39	True	AAAAAG	-4	NA	61279633	61325772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317403_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ES_00058240	chr9	+	5162	20	FSM	ENSMUSG00000032280.17	ENSMUST00000162583.8	4299	20	-863	0	-10	0	multi-exon	FALSE	canonical	3	95	junction_6	39.4816132387409	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGTTTGATTGTTGTGT	NA	False	NA	35	True	AATGAA	-35	NA	61279637	61325768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ES_00058241	chr9	+	4115	20	FSM	ENSMUSG00000032280.17	ENSMUST00000162973.8	4114	20	-1	0	0	0	multi-exon	FALSE	canonical	3	64	junction_12	44.235268765659	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGATTGTTGTGTTTTA	NA	False	NA	39	True	AAAAAG	-4	NA	61280697	61325772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316699_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ES_00058243	chr9	+	2116	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	-3	0	-3	0	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTCCTTTGAGTCTT	NA	False	NA	25	True	AATAAA	-25	NA	62248607	62286094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ES_00058244	chr9	+	943	7	FSM	ENSMUSG00000032249.15	ENSMUST00000135395.8	924	7	-19	0	-19	0	multi-exon	FALSE	canonical	3	7	junction_1	197.739517210563	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCTCCTATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	62249337	62284954	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_62249534_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ES_00058246	chr9	+	2248	7	FSM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	-107	1	-107	-1	multi-exon	FALSE	canonical	3	52	junction_1	5.87130498460285	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCCGTGGCTGTTTCTA	NA	False	NA	12	True	AATAAA	-20	NA	62745959	62759287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_62746237_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
ES_00058249	chr9	+	2586	10	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	14	1569	at_least_one_novel_splicesite	FALSE	canonical	3	162	junction_6	67.8911619914051	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAATGTGTTTTGTTCTG	9228	False	NA	NA	False	ATTAAA	-22	NA	63509955	63549179	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543668_63543766_63546321_63546427_63546874_63546925_63547488
ES_00058258	chr9	+	1132	1	FSM	ENSMUSG00000035337.4	ENSMUST00000039011.4	1162	1	6	24	6	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACGAAGCCCGGTCTTT	3213	False	NA	NA	False	AATATA	-4	NA	64142488	64143620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64142500_64143600
ES_00058262	chr9	+	417	5	FSM	ENSMUSG00000032397.8	ENSMUST00000213165.2	400	5	-17	0	-15	0	multi-exon	FALSE	canonical	3	479	junction_1	838.218646893518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAGCTGCAATTTGAAG	9528	False	NA	NA	False	NA	NA	NA	64188847	64201347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291
ES_00058263	chr9	+	1209	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCTCAGGATTTGAGTT	9565	False	NA	13	True	AATAAA	-13	NA	64188884	64212073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ES_00058264	chr9	+	1215	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	-4	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9565	False	NA	14	True	AATAAA	-14	NA	64188884	64212074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ES_00058265	chr9	+	1863	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	-22	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGTTGAGGCTG	9543	False	NA	NA	False	NA	NA	NA	64188862	64212706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ES_00058266	chr9	+	1199	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCTCAGGATTTGAGTT	9569	False	NA	13	True	AATAAA	-13	NA	64188888	64212073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ES_00058282	chr9	+	2582	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	-70	6	-70	0	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTTGTCTGTGACTG	NA	False	NA	NA	False	AATAAA	-15	NA	65122356	65146500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ES_00058286	chr9	+	2809	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAATTTGTTTTTTTTGTC	6186	False	NA	NA	False	AATAAA	-32	NA	65201576	65237940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ES_00058291	chr9	+	944	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-6	11687	0	-6547	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATCAAGACTGGAATTGG	NA	False	NA	NA	False	NA	NA	NA	65343063	65348012	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
ES_00058298	chr9	+	3799	12	FSM	ENSMUSG00000041064.15	ENSMUST00000239405.2	3680	12	-119	0	-74	0	multi-exon	FALSE	canonical	3	64	junction_6	26.5476337835245	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGTGCCTCCTGCCT	NA	False	NA	22	True	AATAAA	-12	NA	65494367	65503244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ES_00058299	chr9	+	3917	10	FSM	ENSMUSG00000041064.15	ENSMUST00000152529.2	3897	10	-20	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	40.6806290542183	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGCCTCCTGCCTGGTCT	NA	False	NA	27	True	AATAAA	-17	NA	65494474	65503249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65495677_65496286_65496887_65496994_65497110_65497229_65497337_65498968_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ES_00058301	chr9	+	3433	2	NIC	ENSMUSG00000041064.15	novel	3725	12	NA	NA	5102	0	intron_retention	FALSE	canonical	3	160	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGTGCCTCCTGCCT	NA	False	NA	22	True	AATAAA	-12	NA	65499609	65503244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_65501861_65502062
ES_00058302	chr9	+	1987	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ES_00058309	chr9	+	3255	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	0	-1067	0	1067	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTGTAAAGGTTAGAGGA	NA	False	NA	NA	False	NA	NA	NA	65797518	65811615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ES_00058315	chr9	+	7221	15	NIC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	5.25327885948483	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTACTTTTACTTCCT	NA	False	NA	13	True	AATAAA	-14	NA	65816305	65952283	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_65816451_65828285_65828351_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
ES_00058325	chr9	+	794	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	-190	-29	-185	27	multi-exon	FALSE	canonical	3	168	junction_3	5596.89320069626	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCTCTCTCTCTCAG	NA	False	NA	61	True	AATAAA	-45	NA	66853182	66856825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
ES_00058334	chr9	+	3931	16	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	-9	-48	combination_of_known_junctions	TRUE	canonical	3	18	junction_3	30.4426601261381	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTGTTTGTCATTTCA	4694	False	NA	21	True	AATAAA	-15	NA	69305229	69340356	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_69305336_69306227_69306370_69307758_69307864_69314546_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ES_00058335	chr9	+	3784	15	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	-7	-51	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	42.3416618300535	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAAATGTGTTTGTCATT	4696	False	NA	18	True	AATAAA	-12	NA	69305231	69340353	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_69305336_69307758_69307864_69314546_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ES_00058342	chr9	+	965	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	-200	128	-200	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919631	69930020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
ES_00058345	chr9	+	1217	6	FSM	ENSMUSG00000033543.18	ENSMUST00000131078.8	1199	6	-18	0	-14	0	multi-exon	FALSE	canonical	3	21	junction_2	384.735441569918	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919817	69930020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924474_69926670_69926798_69929718
ES_00058346	chr9	+	791	6	FSM	ENSMUSG00000033543.18	ENSMUST00000140265.8	791	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	407.297728940391	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919924	69930020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69924354_69924474_69926670_69926798_69929718
ES_00058349	chr9	+	3769	21	FSM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	-14	0	-14	0	multi-exon	FALSE	canonical	3	66	junction_6	63.2220491600834	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCTAATGTATTGAGAAC	NA	False	NA	17	True	AATAAA	-18	NA	70450021	70499516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ES_00058350	chr9	+	1480	2	FSM	ENSMUSG00000032212.11	ENSMUST00000215714.2	1066	2	0	-414	0	414	multi-exon	FALSE	canonical	3	203	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTTTGATCTTAAGCA	NA	False	NA	NA	False	ATTAAA	-18	NA	70450075	70452443	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_70450364_70451251
ES_00058351	chr9	+	3329	20	FSM	ENSMUSG00000032212.11	ENSMUST00000217593.2	3319	20	-10	0	0	0	multi-exon	TRUE	canonical	1	1	junction_14	78.1917877955886	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGGCTATTTGAGCTTC	NA	False	NA	NA	False	NA	NA	NA	70450151	70499333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ES_00058352	chr9	+	3691	21	FSM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_6	54.986612006924	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGCTAATGTATTGAGA	NA	False	NA	15	True	AATAAA	-16	NA	70450151	70499514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ES_00058359	chr9	+	3472	20	FSM	ENSMUSG00000038535.18	ENSMUST00000184517.8	3919	20	5	442	5	-442	multi-exon	FALSE	canonical	1	1	junction_19	16.0630682207609	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGATTGGCATGTCT	NA	False	NA	NA	False	NA	NA	NA	72182165	72247933	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72246897
ES_00058361	chr9	+	4223	21	FSM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	-23	0	0	0	multi-exon	FALSE	canonical	3	22	junction_19	12.0883208097734	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTATATTCAGATT	NA	False	NA	4	True	AATAAA	-13	NA	72182262	72271043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
ES_00058362	chr9	+	243	1	FSM	ENSMUSG00000098492.2	ENSMUST00000184561.2	445	1	211	-9	211	9	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGGAGGTTAATTAAATGC	NA	False	NA	NA	False	NA	NA	NA	72197159	72197402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72197200_72197400
ES_00058365	chr9	+	5387	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	-137	0	-128	0	multi-exon	FALSE	canonical	3	40	junction_2	21.6834692682276	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATTGTTCTTTATATT	NA	False	NA	NA	False	AATAAA	-19	NA	72345679	72369307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
ES_00058368	chr9	+	890	3	ISM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	13804	3449	13804	-3449	3prime_fragment	FALSE	canonical	3	85	junction_1	11.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	1844	False	NA	5	True	ATTAAA	-17	NA	72359620	72365858	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_72360121_72364059_72364186_72365594
ES_00058369	chr9	+	2136	8	NNC	ENSMUSG00000037674.16	novel	1457	8	NA	NA	-250	6	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	65.8461410085229	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGAGCTTTGTTTTTG	427	False	NA	66	True	AATAAA	-24	NA	72439271	72519762	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_72439940_72440096_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
ES_00058370	chr9	+	8130	9	FSM	ENSMUSG00000037674.16	ENSMUST00000163401.9	7880	9	-250	0	-250	0	multi-exon	FALSE	canonical	3	93	junction_7	49.9699909945959	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGATGTTAAGATAATTTA	427	False	NA	NA	False	ATTAAA	-21	NA	72439271	72530111	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902_72519111_72522318_72522615_72523918
ES_00058373	chr9	+	1513	8	NNC	ENSMUSG00000037674.16	novel	1554	7	NA	NA	-150	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	73.3610028195763	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGATTACCTGGTTTT	527	False	NA	9	True	AATAAA	-18	NA	72439371	72519705	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_72439474_72440096_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
ES_00058376	chr9	+	1189	3	FSM	ENSMUSG00000032216.16	ENSMUST00000184737.2	1260	3	0	71	0	-52	multi-exon	FALSE	non_canonical	0	0	junction_1	1476.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGGGCTGCATAGCGAG	NA	False	NA	NA	False	NA	NA	NA	72569719	72579359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72569896_72577233_72577399_72578511
ES_00058379	chr9	+	4045	9	FSM	ENSMUSG00000032216.16	ENSMUST00000184333.2	4034	9	-11	0	0	0	multi-exon	FALSE	canonical	3	2430	junction_6	219.55234996465	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGATAAAAAGAGAGAC	5148	False	NA	NA	False	NA	NA	NA	72575950	72627637	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499
ES_00058385	chr9	+	9015	20	FSM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	133	0	133	0	multi-exon	FALSE	canonical	3	13	junction_7	6.01935934968244	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAACAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	72714288	72824573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72714815_72716736_72717040_72749976_72750122_72752139_72752274_72755190_72755329_72755595_72755755_72757033_72757194_72758762_72759011_72762237_72762403_72764056_72764363_72766042_72766232_72798058_72798155_72799090_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ES_00058391	chr9	+	2839	10	FSM	ENSMUSG00000034563.17	ENSMUST00000140675.8	2839	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_9	64.8245495335079	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTAGAGTTGCCAATTA	NA	False	NA	5	True	AATAAA	-29	NA	72892886	72923620	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613_72922712_72923179
ES_00058392	chr9	+	900	2	FSM	ENSMUSG00000034563.17	ENSMUST00000138466.2	900	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGAGTTGCCAATTACG	9480	False	NA	7	True	AATAAA	-31	NA	72922254	72923622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72922712_72923179
ES_00058396	chr9	+	1228	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
ES_00058397	chr9	+	1883	2	ISM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	4	0	4	0	intron_retention	FALSE	canonical	3	253	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009683	73011720	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_73009958_73010111
ES_00058399	chr9	+	1606	4	NNC	ENSMUSG00000092622.9	novel	1228	4	NA	NA	39	0	intron_retention	TRUE	canonical	3	158	junction_3	39.0981670499611	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009718	73011720	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_73009958_73010111_73010292_73010497_73010767_73010802
ES_00058404	chr9	+	1717	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	-50	-1238	13	0	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTTTTTTGTTATGCTGA	NA	False	NA	4	True	AATAAA	-13	NA	74944908	74965358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
ES_00058405	chr9	+	4046	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	0	0	0	0	multi-exon	FALSE	canonical	3	5814	junction_2	96	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	20	True	AATAAA	-30	NA	74944999	74967595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_74945244_74959514_74959638_74963916
ES_00058407	chr9	+	756	2	FSM	ENSMUSG00000034593.17	ENSMUST00000149823.2	1768	2	0	1012	0	-1012	multi-exon	FALSE	canonical	3	52	junction_1	0	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGAACTTCACCTTAACT	2160	False	NA	NA	False	GATAAA	-31	NA	74978296	75023578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_74978942_75023467
ES_00058409	chr9	+	11681	40	NIC	ENSMUSG00000034593.17	novel	6372	41	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_18	11.688258408137	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGTCTTTGTCTATAAAC	2351	False	NA	NA	False	AATAAA	-19	NA	74978487	75130970	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75099665_75099747_75101220_75101420_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
ES_00058418	chr9	+	4577	10	FSM	ENSMUSG00000042487.7	ENSMUST00000213767.2	4569	10	-8	0	-8	0	multi-exon	FALSE	canonical	3	353	junction_2	52.8592353844822	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	906	False	NA	5	True	AATAAA	-14	NA	75348797	75373714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_75348918_75352516_75353276_75354383_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75364476_75365356_75365544_75368287_75368386_75373475
ES_00058419	chr9	+	2489	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-73	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	16	True	AATAAA	-21	NA	75375824	75393963	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
ES_00058422	chr9	+	632	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-5395	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	4	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76221463	76228128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_76221574_76226917_76227020_76227708
ES_00058426	chr9	+	6575	14	FSM	ENSMUSG00000009828.16	ENSMUST00000044551.8	6560	14	-15	0	0	0	multi-exon	FALSE	canonical	2	83	junction_12	10.9192842819834	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTGACTAGAATTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	78020581	78079389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
ES_00058431	chr9	+	831	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	-37	511	intron_retention	FALSE	canonical	3	2090	junction_2	20182	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCGTTTGAATCCTTGT	NA	False	NA	NA	False	ATTAAA	-30	NA	78152794	78153928	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78152947_78153027_78153418_78153639
ES_00058432	chr9	+	575	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	4	503	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	21227	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCCGGTGTCCGTTTGA	NA	False	NA	NA	False	ATTAAA	-40	NA	78152835	78153920	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78152947_78153027_78153211_78153639
ES_00058434	chr9	+	621	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	-32	510	at_least_one_novel_splicesite	FALSE	canonical	3	2900	junction_2	19775.5	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGTTTGAATCCTTGTA	3306	False	NA	NA	False	ATTAAA	-31	NA	78179247	78180375	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179660_78180085
ES_00058435	chr9	+	844	4	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	2	716	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	19535.6571598364	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATAAATCCCATGTGGG	3340	False	NA	NA	False	NA	NA	NA	78179281	78180581	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179657_78179811_78179866_78180085
ES_00058437	chr9	+	1988	16	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	75	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	28.2281183692195	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTTGTTGAAATTTTT	9117	False	NA	0	True	AATAAA	-11	NA	78303133	78330867	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78313632_78313715_78318873_78319031_78319474_78319594_78320247_78320359_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ES_00058439	chr9	+	1972	11	NNC	ENSMUSG00000032342.14	novel	2076	11	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	30.4645695850114	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGTTAGGTGATTTT	NA	False	NA	16	True	AATAAA	-15	NA	78355493	78381431	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78355793_78356700_78356901_78356999_78357118_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368877_78372165_78372285_78377912_78378074_78381071
ES_00058445	chr9	+	5344	22	NIC	ENSMUSG00000034252.15	novel	5111	23	NA	NA	0	327	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	122.027282180551	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTGAATTTAATATAAGG	NA	False	NA	NA	False	NA	NA	NA	79974184	80052562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_79974855_79997130_79997189_79999548_79999695_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ES_00058447	chr9	+	4135	21	NIC	ENSMUSG00000034252.15	novel	5111	23	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_3	86.9113916584011	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAATTTGATATTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	79974226	80051453	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_79974855_79999548_79999695_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ES_00058449	chr9	+	4706	23	FSM	ENSMUSG00000034252.15	ENSMUST00000175999.8	4706	23	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	83.8945126703669	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTGTTCTCTTTAATTG	NA	False	NA	NA	False	AGTAAA	-14	NA	79974380	80052063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_79974855_79994711_79994806_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ES_00058453	chr9	+	7632	31	FSM	ENSMUSG00000033577.19	ENSMUST00000113266.8	7632	31	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_12	8.78989318605307	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTGTATTGTGTGCTT	NA	False	NA	NA	False	AATAAA	-20	NA	80124910	80219011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289_80195499_80197147_80197227_80199638_80199800_80206427_80206532_80207816_80207949_80214241_80214461_80214953
ES_00058454	chr9	+	7671	32	FSM	ENSMUSG00000033577.19	ENSMUST00000076140.4	7663	32	-8	0	0	0	multi-exon	TRUE	canonical	3	6	junction_27	17.8693372960674	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTGTATTGTGTGCTT	NA	False	NA	NA	False	AATAAA	-20	NA	80124910	80219011	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289_80195499_80197147_80197227_80199638_80199800_80203924_80203964_80206427_80206532_80207816_80207949_80214241_80214461_80214953
ES_00058455	chr9	+	699	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	-61	0	-61	0	multi-exon	FALSE	canonical	3	2455	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559589	81560730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_81559913_81560354
ES_00058456	chr9	+	848	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	3	2674	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559589	81560730	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_81560062_81560354
ES_00058465	chr9	+	2871	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716770	83754439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ES_00058476	chr9	+	2026	14	FSM	ENSMUSG00000034973.17	ENSMUST00000189564.7	2164	14	138	0	138	0	multi-exon	FALSE	canonical	3	14	junction_10	2.70217970311543	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTGGTCTCAAGCCT	NA	False	NA	13	True	AATACA	-18	NA	86413767	86436678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_86413824_86414982_86415088_86417960_86418028_86418167_86418313_86418495_86418576_86424411_86424522_86424787_86424938_86425061_86425124_86427293_86427447_86430222_86430360_86430853_86430910_86432055_86432221_86433698_86433829_86436068
ES_00058477	chr9	+	1296	3	FSM	ENSMUSG00000034973.17	ENSMUST00000187427.2	1296	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTCTCAAGCCTCATTT	NA	False	NA	18	True	AATACA	-23	NA	86431669	86436683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_86432221_86433698_86433829_86436068
ES_00058479	chr9	+	1355	3	FSM	ENSMUSG00000032417.11	ENSMUST00000034988.10	1355	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	22.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGTCTCAAGTCCAA	NA	False	NA	6	True	AATAAA	-19	NA	86454068	86456952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_86454271_86454889_86455117_86456026
ES_00058481	chr9	+	3462	2	FSM	ENSMUSG00000033491.14	ENSMUST00000036426.13	3444	2	-18	0	-18	0	multi-exon	FALSE	canonical	3	21	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTACTGTGTTTGTATA	NA	False	NA	4	True	AATAAA	-19	NA	86625683	86640496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_86625860_86637210
ES_00058486	chr9	+	236	1	FSM	ENSMUSG00000092805.4	ENSMUST00000175064.4	290	1	-3	57	-3	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGGCAAAACCCAAAATC	NA	False	NA	NA	False	NA	NA	NA	88435285	88435521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_88435300_88435500
ES_00058487	chr9	+	670	2	FSM	ENSMUSG00000102037.2	ENSMUST00000098485.4	819	2	147	2	147	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTCATGATTTCAGTT	5408	False	NA	NA	False	AATAAA	-22	NA	88839099	88844470	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_88839524_88844224
ES_00058493	chr9	+	710	3	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	4	-4	combination_of_known_junctions	TRUE	canonical	3	83	junction_1	155	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATCAATAGAAATT	NA	False	NA	NA	False	AATAAA	-17	NA	89093467	89122275	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_89093535_89097261_89097524_89121894
ES_00058500	chr9	+	1618	1	FSM	ENSMUSG00000056904.4	ENSMUST00000077991.4	1348	1	-106	-164	-106	164	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGATCATGTGGTCTTT	NA	False	NA	NA	False	AGTAAA	-22	NA	90979095	90980713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_90979100_90980700
ES_00058502	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	116.228223766863	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	False	NA	NA	False	NA	NA	NA	92132394	92154028	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ES_00058505	chr9	+	3663	20	FSM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_13	23.4907891420283	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACATTGTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	92424316	92490473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92484037_92484101_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ES_00058514	chr9	+	5502	42	FSM	ENSMUSG00000032410.14	ENSMUST00000034981.14	5499	42	-3	0	-3	0	multi-exon	TRUE	canonical	3	16	junction_37	10.9955915670048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAATTAAACC	NA	False	NA	NA	False	NA	NA	NA	95836809	95935080	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921910_95927538_95927715_95929835_95929950_95930393_95930497_95933646_95933808_95934565
ES_00058515	chr9	+	10263	42	FSM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	-10	3	-3	-3	multi-exon	FALSE	canonical	3	17	junction_40	10.3589359987776	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACACTGCTGCTTTGCTTG	NA	False	NA	22	True	ATTAAA	-22	NA	95836809	95939853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921898_95927538_95927715_95929835_95929950_95930393_95930497_95933646_95933808_95934565
ES_00058520	chr9	+	7376	13	FSM	ENSMUSG00000032411.16	ENSMUST00000034982.16	7354	13	-22	0	7	0	multi-exon	FALSE	canonical	3	58	junction_3	115.436009209528	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTCATAATTGGTG	NA	False	NA	NA	False	AATAAA	-14	NA	96078334	96205699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058521	chr9	+	1718	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	114.876352609616	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078339	96200024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058524	chr9	+	1723	13	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_4	139.700174978018	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078348	96200024	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058525	chr9	+	7353	12	FSM	ENSMUSG00000032411.16	ENSMUST00000188008.7	1576	12	-95	-5682	-53	0	multi-exon	FALSE	canonical	3	40	junction_2	138.805946951458	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTCATAATTGGTG	NA	False	NA	NA	False	AATAAA	-14	NA	96078274	96205699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_96078614_96084183_96084242_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058526	chr9	+	1733	14	FSM	ENSMUSG00000032411.16	ENSMUST00000188750.7	1713	14	-20	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	94.2279120445955	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078369	96200024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058527	chr9	+	1780	14	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_3	121.307619140508	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078356	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058528	chr9	+	7314	13	NIC	ENSMUSG00000032411.16	novel	7354	13	NA	NA	10	-20	combination_of_known_junctions	FALSE	canonical	3	58	junction_3	132.410635482535	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAATTTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	96078379	96205679	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058529	chr9	+	1652	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	146.640977863928	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078374	96200024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96129102_96129142_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058530	chr9	+	1828	15	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_3	119.483326477473	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078356	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058531	chr9	+	2464	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	-97	combination_of_known_junctions	FALSE	canonical	3	208	junction_3	91.9133045622643	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATTGCTTGTCTATAGT	NA	False	NA	NA	False	AAGAAA	-14	NA	96078400	96200834	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058532	chr9	+	7322	14	FSM	ENSMUSG00000032411.16	ENSMUST00000185644.7	2646	14	-11	-4665	0	0	multi-exon	FALSE	canonical	3	39	junction_4	147.555024337027	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTCATAATTGGTG	NA	False	NA	NA	False	AATAAA	-14	NA	96078389	96205699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_96078614_96084183_96084242_96114734_96114802_96129102_96129142_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058534	chr9	+	1369	10	NIC	ENSMUSG00000032411.16	novel	1340	10	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	134.70214054226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96140783	96200024	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96140942_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00058538	chr9	+	879	1	FSM	ENSMUSG00000101502.2	ENSMUST00000190579.2	798	1	-16	-65	-16	65	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTATTTGAATCAAATCA	NA	False	NA	NA	False	ATTAAA	-18	NA	97061215	97062094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_97061200_97062100
ES_00058548	chr9	+	1834	1	FSM	ENSMUSG00000090470.3	ENSMUST00000167951.3	1817	1	-17	0	-17	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGAGTCAAAAATCATAGC	NA	False	NA	6	True	AATAAA	-19	NA	98746802	98748636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_98746800_98748600
ES_00058552	chr9	+	1035	5	FSM	ENSMUSG00000032463.11	ENSMUST00000185472.2	568	5	-100	-367	-100	34	multi-exon	FALSE	canonical	2	3	junction_1	124.26458666893	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTAGGTTAGCCTGTCA	8902	False	NA	43	True	NA	NA	NA	98873783	98884108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_98873906_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ES_00058554	chr9	+	2695	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	25	-5	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACGTAAGTGTCCCTAG	NA	False	NA	13	True	AATAAA	-18	NA	99125444	99182452	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ES_00058556	chr9	+	1787	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	-19	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125494	99146981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ES_00058557	chr9	+	2606	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	72.0150887688172	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ES_00058558	chr9	+	2332	6	NNC	ENSMUSG00000056267.15	novel	1138	8	NA	NA	207	211	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	175.931122886202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATGAAGTTCAGAGTACA	NA	False	NA	NA	False	NA	NA	NA	99125785	99147192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_99125938_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145450
ES_00058563	chr9	+	4026	16	NIC	ENSMUSG00000037784.15	novel	4350	17	NA	NA	-2206	82	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	3.49602949390051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCAGCTTAGGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	99514707	99551391	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
ES_00058564	chr9	+	6188	34	FSM	ENSMUSG00000037286.16	ENSMUST00000129269.8	6186	34	-3	1	-3	0	multi-exon	FALSE	canonical	3	316	junction_9	35.0771941586826	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	14	True	AATAAA	-14	NA	100525497	100840597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
ES_00058565	chr9	+	5922	33	FSM	ENSMUSG00000037286.16	ENSMUST00000041418.13	5909	33	-13	0	0	0	multi-exon	FALSE	canonical	3	20	junction_30	76.7811355310502	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	14	True	AATAAA	-14	NA	100525652	100840597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100836273_100836389_100838421_100838503_100838587
ES_00058567	chr9	+	5428	3	NNC	ENSMUSG00000066415.5	novel	4889	2	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	25.5	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGAATTTTTTTTCCG	NA	False	NA	NA	False	AGTAAA	-14	NA	100956089	100981999	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_100956372_100956557_100957474_100977769
ES_00058571	chr9	+	586	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	3	0	-3	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTTTTGCTTCTGTCAA	NA	False	NA	NA	False	ATTAAA	-15	NA	102503494	102511621	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_102503546_102506961_102507088_102511212
ES_00058572	chr9	+	727	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	699	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTTCGTTTTGTTTT	NA	False	NA	25	True	AATAAA	-25	NA	102503522	102511449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_102503887_102506961_102507088_102511212
ES_00058573	chr9	+	595	3	FSM	ENSMUSG00000035048.14	ENSMUST00000186693.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	703	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503877	102511441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_102504118_102506961_102507088_102511212
ES_00058575	chr9	+	4328	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102594866	102610617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ES_00058578	chr9	+	2852	15	FSM	ENSMUSG00000032547.13	ENSMUST00000035142.8	2852	15	0	0	0	0	multi-exon	TRUE	canonical	3	312	junction_7	39.7877019252155	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCACAGTGTGTGACTG	NA	False	NA	52	True	ATTAAA	-32	NA	102712170	102785152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763201_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
ES_00058583	chr9	+	5437	28	NIC	ENSMUSG00000032555.11	novel	5224	28	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	134.051952339106	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	1010	False	NA	14	True	AATAAA	-19	NA	103182470	103227627	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_103182841_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
ES_00058589	chr9	+	4665	27	FSM	ENSMUSG00000032558.20	ENSMUST00000194774.6	4722	27	57	0	-47	0	multi-exon	TRUE	canonical	2	3	junction_1	6.38461538461538	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCCTAAGCTGGTTTAG	NA	False	NA	NA	False	NA	NA	NA	103879909	103920308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_103880001_103881912_103882039_103882654_103882806_103885319_103885473_103886338_103886473_103888799_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
ES_00058590	chr9	+	5699	27	FSM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	196	4	-16	-4	multi-exon	FALSE	canonical	3	11	junction_1	5.77333187568024	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTTGGCCAAGTTTAG	NA	False	NA	10	True	AATAAA	-24	NA	103879940	103921013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_103880361_103881912_103882039_103882654_103882806_103885319_103885473_103886338_103886473_103888799_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
ES_00058598	chr9	+	4710	20	FSM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	0	1	0	-1	multi-exon	FALSE	canonical	3	108	junction_1	21.4158146964708	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGGATTTTTTTGGAGA	NA	False	NA	31	True	AGTAAA	-22	NA	105520368	105564855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
ES_00058600	chr9	+	3635	8	NIC	ENSMUSG00000020257.14	novel	3747	9	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_3	76.5447714792874	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCATTGAGTTTCTGTA	NA	False	NA	54	True	NA	NA	NA	106048138	106068338	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_106048579_106053811_106053910_106057764_106057832_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
ES_00058603	chr9	+	2337	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTTTGCCTGATCTT	9557	False	NA	22	True	AGTAAA	-16	NA	106158259	106227720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
ES_00058612	chr9	+	1586	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106354467	106362623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ES_00058614	chr9	+	5748	25	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	7	62	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	84.0237131707472	58	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAGGACTTGTAAGGAAG	NA	False	NA	78	True	NA	NA	NA	106699079	106758253	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132_106757413_106757466
ES_00058617	chr9	+	1561	1	FSM	ENSMUSG00000092125.2	ENSMUST00000164248.2	1269	1	-45	-247	-45	247	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATTAAGAATGCTTTAC	NA	False	NA	NA	False	NA	NA	NA	107069946	107071507	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107069900_107071500
ES_00058618	chr9	+	2175	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	19	0	19	0	multi-exon	FALSE	canonical	3	142	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107411162	107415872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107412529_107415063
ES_00058620	chr9	+	1740	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	-4	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTGGAATATTGAGTA	NA	False	NA	2	True	AATAAA	-13	NA	107419439	107422894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
ES_00058624	chr9	+	1895	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	False	NA	15	True	ATTAAA	-17	NA	107446313	107449975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
ES_00058626	chr9	+	2051	2	FSM	ENSMUSG00000079334.9	ENSMUST00000093785.6	2053	2	0	2	0	-2	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGACAGTTTATTGG	NA	False	NA	10	True	AATAAA	-16	NA	107457315	107461247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107458135_107460015
ES_00058631	chr9	+	2037	6	FSM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	0	5	0	0	multi-exon	FALSE	canonical	3	19	junction_2	6.62117814289874	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGCCCTTTGTCATTGG	NA	False	NA	NA	False	ATTAAA	-17	NA	107765380	107780333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393_107779160_107779814_107779963_107780060
ES_00058632	chr9	+	3072	11	FSM	ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	205	0	-19	0	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTTGCCTTTGCTTCCT	NA	False	NA	18	True	AATAAA	-26	NA	107813077	107826890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ES_00058633	chr9	+	3607	10	FSM	ENSMUSG00000032936.14	ENSMUST00000192318.2	3253	10	-16	-338	-16	324	multi-exon	FALSE	canonical	3	36	junction_5	6.48264539813992	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCACTATAGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	107813080	107827214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ES_00058639	chr9	+	853	4	FSM	ENSMUSG00000032594.12	ENSMUST00000164395.9	847	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	11	junction_2	150.14881506914	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGAGCAGAGCACGTCG	6842	False	NA	NA	False	NA	NA	NA	107879821	107922046	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107880022_107901301_107901650_107918103_107918286_107921923
ES_00058640	chr9	+	4844	6	FSM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	-14	-2673	0	0	multi-exon	FALSE	canonical	3	91	junction_5	93.84540478894	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6848	False	NA	17	True	AATAAA	-17	NA	107879827	107925981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922513_107922661
ES_00058642	chr9	+	4494	7	NIC	ENSMUSG00000032594.12	novel	4559	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_5	118.632134488651	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6853	False	NA	17	True	AATAAA	-17	NA	107879832	107925981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
ES_00058650	chr9	+	663	4	FSM	ENSMUSG00000032607.13	ENSMUST00000160675.2	651	4	-12	0	0	0	multi-exon	FALSE	canonical	3	179	junction_2	8.01387685344754	1554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGCTCTGCAAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	108174108	108176642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578
ES_00058653	chr9	+	1073	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	0	-1	0	1	multi-exon	FALSE	canonical	3	8868	junction_1	0	2160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGTCCTGTGTCAT	NA	False	NA	19	True	AATAAA	-19	NA	108216252	108217543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108216758_108216975
ES_00058654	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216441	108217449	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108216758_108216978
ES_00058655	chr9	+	914	3	NNC	ENSMUSG00000063856.9	novel	653	3	NA	NA	0	35558	intron_retention	FALSE	non_canonical	0	0	junction_2	4434	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGTTGACTGAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	108216441	108253100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_108216758_108216975_108217541_108253067
ES_00058656	chr9	+	913	3	NNC	ENSMUSG00000063856.9	novel	653	3	NA	NA	0	35558	intron_retention	FALSE	non_canonical	0	0	junction_2	4434	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGTTGACTGAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	108216441	108253100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_108216758_108216975_108217540_108253067
ES_00058660	chr9	+	1221	4	FSM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	-124	4	-95	-4	multi-exon	FALSE	canonical	3	7	junction_3	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGGTGGGTTTATTACC	5831	False	NA	NA	False	AATAAA	-16	NA	108269908	108274965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108270059_108270433_108270839_108272492_108272585_108274391
ES_00058661	chr9	+	3147	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	-162	107	-162	25	multi-exon	FALSE	canonical	3	208	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCATCAGTTCTTTGAG	25	False	NA	39	True	AATAAA	-32	NA	108337563	108343030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108337817_108340136
ES_00058667	chr9	+	4543	27	NIC	ENSMUSG00000006676.17	novel	4517	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_26	69.5979153601974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTCTCTCTGTCTAA	NA	False	NA	15	True	AATAAA	-17	NA	108368043	108378896	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
ES_00058669	chr9	+	4517	27	FSM	ENSMUSG00000006676.17	ENSMUST00000193678.6	4517	27	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_10	53.0108423653503	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108368043	108379516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
ES_00058675	chr9	+	3281	10	NIC	ENSMUSG00000006673.15	novel	3040	10	NA	NA	75	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	173.205152034684	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGCTTTTTTTTTTTT	941	False	NA	4	True	AGTAAA	-8	NA	108394079	108437191	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_108394452_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ES_00058678	chr9	+	3495	11	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	721	3	NA	NA	-2	-1	multi-exon	FALSE	canonical	3	61	junction_1	223.453440340488	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTACTGGAGAACGTGT	1681	False	NA	63	True	NA	NA	NA	108394819	108437361	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr9_+_108395176_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ES_00058680	chr9	+	1858	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	0	0	0	0	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	1299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTTCAATGGGCAC	995	False	NA	36	True	AATAAA	-29	NA	108437484	108442783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ES_00058681	chr9	+	671	4	FSM	ENSMUSG00000062867.14	ENSMUST00000194365.2	661	4	-10	0	0	0	multi-exon	FALSE	canonical	3	2183	junction_3	120.432553738597	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGAGGTGGGTGCCACT	1179	False	NA	NA	False	NA	NA	NA	108437668	108439571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108437831_108438232_108438282_108438795_108439057_108439372
ES_00058682	chr9	+	1216	8	FSM	ENSMUSG00000062867.14	ENSMUST00000194904.2	961	8	-255	0	-255	0	multi-exon	FALSE	canonical	3	50	junction_3	1069.16688909388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACAGCCTCCATTCGTAA	3589	False	NA	NA	False	NA	NA	NA	108440078	108442593	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525
ES_00058690	chr9	+	1204	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	-13	0	-13	0	multi-exon	FALSE	canonical	3	25	junction_2	47	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGTCTTGTAGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	108660981	108675188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108661070_108673262_108673596_108674405
ES_00058691	chr9	+	2493	2	FSM	ENSMUSG00000032599.13	ENSMUST00000193634.2	2820	2	-14	341	12	-341	multi-exon	FALSE	canonical	3	119	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTGATGCCCGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	108661006	108675692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108661070_108673262
ES_00058695	chr9	+	1772	6	FSM	ENSMUSG00000032599.13	ENSMUST00000085018.6	1846	6	70	4	0	1	multi-exon	FALSE	canonical	3	6	junction_2	11.6516093309036	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGCTGCTGTCGTTCT	NA	False	NA	15	True	AATACA	-19	NA	108673262	108683532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108673596_108675308_108675378_108675469_108675693_108676440_108676617_108681740_108681917_108682737
ES_00058697	chr9	+	3360	14	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	20	-8	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	28.6732252485458	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTCCAGCTAGTGTCCG	3223	False	NA	NA	False	AATAAA	-14	NA	108685639	108696035	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_108685854_108688020_108688102_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ES_00058701	chr9	+	3425	21	NNC	ENSMUSG00000023259.18	novel	2552	21	NA	NA	-145	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	10.09405765785	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTCTGTCCAACTTC	NA	False	NA	-2	True	AATACA	-12	NA	108731090	108742096	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_108732016_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
ES_00058702	chr9	+	2552	21	FSM	ENSMUSG00000023259.18	ENSMUST00000188557.8	2552	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	9.81121806912883	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTCTGTCCAACTTC	NA	False	NA	-2	True	AATACA	-12	NA	108731333	108742096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108731386_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
ES_00058703	chr9	+	1695	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	14	-56	14	56	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTTCTGCACCCTCTCAA	NA	False	NA	74	True	NA	NA	NA	108765714	108778747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ES_00058706	chr9	+	1849	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	-15	0	5	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867637	108886792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
ES_00058707	chr9	+	1918	6	FSM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	-22	14	-22	-14	multi-exon	FALSE	canonical	3	51	junction_2	78.9186923358465	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCAAAAACTATTTCTG	NA	False	NA	57	True	NA	NA	NA	108867610	108886831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108867833_108869937_108870095_108880431_108880522_108885045_108885162_108885354_108885574_108885717
ES_00058708	chr9	+	1035	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	3	0	3	0	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTATAGAGGGCCACATG	NA	False	NA	NA	False	NA	NA	NA	108883933	108886275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
ES_00058712	chr9	+	4927	22	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	12730	40	1325	-40	3prime_fragment	FALSE	canonical	2	9	junction_2	3.89895037913499	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGTCATGAAAATAAAAAT	136	False	NA	NA	False	NA	NA	NA	108937186	108948945	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_108937295_108937474_108937612_108937866_108938044_108938235_108938366_108938557_108938801_108939417_108939595_108939670_108939820_108940525_108940627_108940714_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ES_00058714	chr9	+	1070	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	4	0	4	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661829	109672042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ES_00058715	chr9	+	599	6	FSM	ENSMUSG00000032478.15	ENSMUST00000199758.5	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	239.071872038515	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGAAACAGGAGGCCAC	NA	False	NA	NA	False	NA	NA	NA	109661953	109671654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670994_109671156_109671519
ES_00058717	chr9	+	3632	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	28	True	AATAAA	-18	NA	109704646	109722963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
ES_00058719	chr9	+	5909	17	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_13	70.836712541944	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTATGTTGCTTCTGT	NA	False	NA	17	True	AATAAA	-17	NA	109760494	109913015	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ES_00058720	chr9	+	5977	19	FSM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	-404	0	0	0	multi-exon	FALSE	canonical	3	101	junction_18	61.7868698345418	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTATGTTGCTTCTGT	NA	False	NA	17	True	AATAAA	-17	NA	109760527	109913015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910908
ES_00058721	chr9	+	6098	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	-10	3	-10	-3	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTGCTTCTGTCCTCT	NA	False	NA	22	True	AATAAA	-22	NA	109760517	109913020	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ES_00058723	chr9	+	442	3	FSM	ENSMUSG00000032479.16	ENSMUST00000196729.2	442	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	146.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCTGCTTTGGCTGGCT	5880	False	NA	NA	False	NA	NA	NA	109855186	109857189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109855292_109856746_109856861_109856966
ES_00058729	chr9	+	3538	27	FSM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_24	83.6874645091864	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATAGTTCCTGGCTGT	2502	False	NA	16	True	ATTAAA	-26	NA	109961104	110064359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
ES_00058730	chr9	+	6153	29	NNC	ENSMUSG00000032481.18	novel	5773	29	NA	NA	0	513	at_least_one_novel_splicesite	FALSE	non_canonical	3	394	junction_28	190.854135455348	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGAATACCACCACGTCTG	2502	False	NA	NA	False	NA	NA	NA	109961104	110069759	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886_110068356_110068375
ES_00058735	chr9	+	2135	4	FSM	ENSMUSG00000032482.10	ENSMUST00000199736.2	2107	4	-28	0	-28	0	multi-exon	TRUE	canonical	3	35	junction_3	9.53356643071673	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTTAGTGCCGTGGCC	NA	False	NA	19	True	AATAAA	-20	NA	110075104	110091643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110076459_110080026_110080216_110085212_110085289_110091127
ES_00058740	chr9	+	8279	21	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3402	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	21.2388794431345	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGAATGTGTGCTCCCTC	NA	False	NA	13	True	AATAAA	-14	NA	110358262	110447675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_110358374_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ES_00058741	chr9	+	8306	21	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3432	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_13	24.3052977764108	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGAATGTGTGCTCCCTC	NA	False	NA	13	True	AATAAA	-14	NA	110358232	110447675	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_110358374_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421469_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ES_00058742	chr9	+	8438	21	FSM	ENSMUSG00000044791.17	ENSMUST00000153838.8	8350	21	-114	26	-114	0	multi-exon	FALSE	canonical	3	15	junction_1	28.3608885615384	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGAATGTGTGCTCCCTC	NA	False	NA	13	True	AATAAA	-14	NA	110361550	110447675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110361821_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ES_00058748	chr9	+	2440	5	FSM	ENSMUSG00000044664.8	ENSMUST00000035715.8	1584	5	-864	8	-864	-8	multi-exon	FALSE	canonical	2	5	junction_2	4.03112887414927	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAACTATATGAGCAGA	1846	False	NA	NA	False	GATAAA	-20	NA	110626369	110632814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110627477_110627779_110627937_110628225_110628489_110629878_110630040_110632062
ES_00058753	chr9	+	5070	27	FSM	ENSMUSG00000044037.16	ENSMUST00000130386.8	5056	27	-14	0	-14	0	multi-exon	FALSE	canonical	3	8	junction_1	6.41374264174641	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGCATGTGTGTTCA	NA	False	NA	4	True	AATAAA	-17	NA	110709259	110729598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110709298_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ES_00058754	chr9	+	4051	19	FSM	ENSMUSG00000044037.16	ENSMUST00000156673.2	4122	19	71	0	71	0	multi-exon	FALSE	canonical	1	1	junction_1	9.1469484893415	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTGCATGTGTGTT	7127	False	NA	2	True	AATAAA	-15	NA	110717133	110729596	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110717177_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ES_00058755	chr9	+	3567	11	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-4986	38	at_least_one_novel_splicesite	FALSE	non_canonical	1	1	junction_1	117.868782974968	308	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCCCAGAGATAGGCTC	5860	False	NA	46	True	NA	NA	NA	110775626	110813172	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_110775703_110782201_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697_110812424_110812638
ES_00058756	chr9	+	3314	7	ISM	ENSMUSG00000032495.9	ENSMUST00000035076.9	3657	9	9322	-1	33	1	3prime_fragment	FALSE	canonical	3	227	junction_2	34.6959011347962	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTTCCACGTGTGTTCC	NA	False	NA	9	True	AATAAA	-20	NA	110789934	110813135	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ES_00058758	chr9	+	3191	14	FSM	ENSMUSG00000032497.20	ENSMUST00000098340.7	3191	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	68.9842619904487	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGCATCCTGTGGTCTG	NA	False	NA	16	True	GATAAA	-21	NA	110947202	111054736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
ES_00058760	chr9	+	1431	4	FSM	ENSMUSG00000032497.20	ENSMUST00000196906.2	822	4	-340	-269	-340	0	multi-exon	FALSE	canonical	3	209	junction_2	5.90668171555645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGATTTTGTTTGT	9002	False	NA	46	True	AATGAA	-18	NA	111047897	111053290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_111048871_111051225_111051306_111052333_111052439_111053017
ES_00058763	chr9	+	770	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	47944	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	3978	False	NA	NA	False	AATAAA	-20	NA	111316092	111318186	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_111316269_111317592
ES_00058766	chr9	+	2234	11	FSM	ENSMUSG00000033392.17	ENSMUST00000216817.2	2234	11	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_10	60.2408499276031	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACAGAGTTTTAAAGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	113570579	113671965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_113570944_113590657_113590737_113595635_113595740_113599264_113599357_113600850_113600927_113602747_113602846_113615631_113615703_113642209_113642357_113664242_113664323_113670626_113670720_113670935
ES_00058768	chr9	+	3695	16	FSM	ENSMUSG00000009741.16	ENSMUST00000009885.14	3742	16	47	0	47	0	multi-exon	TRUE	canonical	3	95	junction_1	93.8633522142103	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGTCACTCATTTCAA	1349	False	NA	20	True	AATAAA	-20	NA	113760048	113806267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ES_00058769	chr9	+	3803	17	FSM	ENSMUSG00000009741.16	ENSMUST00000084885.12	3850	17	47	0	47	0	multi-exon	FALSE	canonical	3	95	junction_1	91.3275141660497	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGTCACTCATTTCAA	1349	False	NA	20	True	AATAAA	-20	NA	113760048	113806267	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ES_00058772	chr9	+	1977	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	196	187	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	91.3275141660497	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTCGTGAGAGAGAGAG	1498	False	NA	NA	False	NA	NA	NA	113760197	113804638	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ES_00058773	chr9	+	3528	16	FSM	ENSMUSG00000009741.16	ENSMUST00000216558.2	1623	16	-287	-1618	-68	0	multi-exon	FALSE	canonical	3	224	junction_8	65.0003076915794	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTTTGAATTCATTAT	1735	False	NA	17	True	AATAAA	-18	NA	113760434	113806069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ES_00058783	chr9	+	2477	12	FSM	ENSMUSG00000040875.13	ENSMUST00000183104.8	2477	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	15.4807264868928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCGTTGGTATTTGTTG	NA	False	NA	6	True	ATTAAA	-16	NA	114807636	115061291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_114808033_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ES_00058786	chr9	+	3555	9	NIC	ENSMUSG00000039285.13	novel	3396	8	NA	NA	10	122	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	60.328139164075	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACCGACAGTAGCCACAT	9595	False	NA	NA	False	NA	NA	NA	117869576	117893029	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117888687_117888735_117890781
ES_00058790	chr9	+	2672	6	FSM	ENSMUSG00000032446.15	ENSMUST00000111763.8	2869	6	197	0	65	0	multi-exon	FALSE	canonical	2	3	junction_5	6.66333249958307	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAACAAAACAAAACA	NA	False	NA	NA	False	ATTAAA	-29	NA	118307476	118314434	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300_118311363_118313398
ES_00058792	chr9	+	7606	24	FSM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	-23	0	-23	0	multi-exon	FALSE	canonical	3	96	junction_12	49.6666772391441	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118335311	118411587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
ES_00058793	chr9	+	7641	25	NNC	ENSMUSG00000038708.11	novel	7583	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_12	56.5700156148703	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118335338	118411587	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380902_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
ES_00058801	chr9	+	1770	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	-8	0	-8	0	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7720	False	NA	28	True	AGTAAA	-19	NA	119170351	119179365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ES_00058807	chr9	+	3175	11	FSM	ENSMUSG00000061393.15	ENSMUST00000215746.2	3175	11	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	23.1622537763491	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGAAAAAAAAAGTT	NA	False	NA	NA	False	AAGAAA	-4	NA	119231509	119264061	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
ES_00058809	chr9	+	2587	7	FSM	ENSMUSG00000042787.16	ENSMUST00000164213.5	2571	7	-16	0	1	0	multi-exon	FALSE	canonical	3	15	junction_2	23.8706002345051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCCTGACTGCATATT	NA	False	NA	NA	False	AAAAAG	-3	NA	119274009	119293304	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119274217_119274352_119274388_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ES_00058810	chr9	+	2669	8	NIC	ENSMUSG00000042787.16	novel	2571	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCCTGACTGCATATT	NA	False	NA	NA	False	AAAAAG	-3	NA	119274041	119293304	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ES_00058812	chr9	+	3848	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	-3	0	-3	0	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	29	True	AATAAA	-17	NA	119723940	119755652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ES_00058814	chr9	+	682	6	FSM	ENSMUSG00000032519.12	ENSMUST00000150093.8	682	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	68.5407907745453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTTACAGCTATGAGAGC	1791	False	NA	NA	False	NA	NA	NA	119939470	119949742	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738
ES_00058817	chr9	+	1101	7	FSM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1986.85748524313	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
ES_00058818	chr9	+	798	4	FSM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	20	718	10	522	multi-exon	FALSE	canonical	3	15	junction_3	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCTGGCGTGGCTTCTG	NA	False	NA	4	True	NA	NA	NA	119978792	119997726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_119997288
ES_00058821	chr9	+	3321	11	FSM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	0	132	0	-132	multi-exon	FALSE	canonical	3	4	junction_7	3.21869538788622	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCTCTTCTAGCCTTC	NA	False	NA	NA	False	NA	NA	NA	120368883	120397261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_120368950_120369717_120369770_120373024_120373153_120383134_120383253_120384710_120384862_120386457_120386618_120387401_120387636_120389546_120389820_120389986_120390098_120390964_120391103_120395371
ES_00058823	chr9	+	1273	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	0	-2	0	-1	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATGTGTGGACTCTAA	NA	False	NA	18	True	AATAAA	-22	NA	120400579	120403500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ES_00058825	chr9	+	842	4	FSM	ENSMUSG00000025794.10	ENSMUST00000216990.2	598	4	-25	-219	-25	0	multi-exon	FALSE	canonical	2	573	junction_1	6865.05966632645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	NA	False	NA	26	True	AATAAA	-35	NA	120401135	120403720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_120401264_120402641_120402742_120402829_120402884_120403160
ES_00058826	chr9	+	789	2	FSM	ENSMUSG00000025794.10	ENSMUST00000215063.2	570	2	0	-219	0	0	multi-exon	FALSE	canonical	3	15430	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	737	False	NA	26	True	AATAAA	-35	NA	120402654	120403720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_120402884_120403160
ES_00058828	chr9	+	3623	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120762465	120789573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ES_00058830	chr9	+	4543	15	ISM	ENSMUSG00000032536.13	ENSMUST00000238988.2	3353	17	-23	10389	-13	0	5prime_fragment	TRUE	canonical	3	209	junction_1	22.8924949826491	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAGGTCCTAGTTTTAC	NA	False	NA	9	True	ATTAAA	-19	NA	121126554	121291676	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424
ES_00058833	chr9	+	5192	17	NNC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_15	49.7895179103996	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTTTTTTAGTATGTC	NA	False	NA	16	True	AATAAA	-24	NA	121126599	121303989	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289581_121298050_121298154_121301302
ES_00058837	chr9	+	2331	2	FSM	ENSMUSG00000032526.12	ENSMUST00000215966.2	2316	2	-15	0	2	0	multi-exon	FALSE	canonical	3	377	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCTGCGAGGACCTGA	NA	False	NA	9	True	AATAAA	-22	NA	121539396	121541894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_121539538_121539704
ES_00058838	chr9	+	1194	2	FSM	ENSMUSG00000032526.12	ENSMUST00000214535.2	1175	2	-19	0	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTGCTTGCTTTCAGTT	NA	False	NA	NA	False	CATAAA	-10	NA	121539411	121542454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_121539782_121541630
ES_00058851	chr9	+	2576	5	FSM	ENSMUSG00000032540.17	ENSMUST00000111497.5	2576	5	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	33.7073804974519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180794	122210589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_122180905_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ES_00058858	chr9	+	3049	6	FSM	ENSMUSG00000036768.7	ENSMUST00000215176.2	1057	6	-9	-1983	0	-1436	multi-exon	FALSE	canonical	3	187	junction_5	25.0391693152948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCATTGTTCTTA	NA	False	NA	NA	False	NA	NA	NA	122780150	122803393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753
ES_00058866	chr9	+	1076	9	NNC	ENSMUSG00000025785.6	novel	1053	8	NA	NA	0	84916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	445.055316084417	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACCAAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122942279	123050110	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963_122965191_123050083
ES_00058867	chr9	+	1825	3	FSM	ENSMUSG00000025785.6	ENSMUST00000159376.2	711	3	-52	-1062	-9	1062	multi-exon	FALSE	canonical	3	1248	junction_2	85	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATCCTGTAGCCCTAAGA	NA	False	NA	NA	False	NA	NA	NA	122942270	122949911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_122942388_122947955_122948058_122948305
ES_00058869	chr9	+	1133	1	Genic_Genomic	ENSMUSG00000035202.9	novel	NA	NA	NA	NA	6804	60	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGAGGAAGTAGAGTTGGA	NA	False	NA	71	True	NA	NA	NA	123290658	123291791	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_+_123290700_123291800
ES_00058876	chr9	-	1128	4	FSM	ENSMUSG00000042360.13	ENSMUST00000188577.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	6.12825877028341	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCAGTGTCAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	3199799	3190270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_3190806_3192311_3192413_3192819_3193049_3199536
ES_00058877	chr9	-	2952	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	0	-109	0	109	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTCAATTACATTTCCA	1	True	NA	NA	False	NA	NA	NA	4309467	4294683	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ES_00058878	chr9	-	2818	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	-8	0	7	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTTGACATGTGCCAGAA	-1	True	NA	NA	False	NA	NA	NA	4309469	4294785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
ES_00058879	chr9	-	208	1	Intergenic	novelGene_4046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGAGTAGGATTCCTATG	NA	False	NA	NA	False	NA	NA	NA	6069640	6069432	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_6069400_6069600
ES_00058880	chr9	-	240	3	FSM	ENSMUSG00000047193.17	ENSMUST00000152934.2	933	3	693	0	693	0	multi-exon	FALSE	canonical	3	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGAAAGGCCGACTTCA	NA	False	NA	NA	False	NA	NA	NA	6955996	6940584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_6940625_6941594_6941705_6955906
ES_00058881	chr9	-	3331	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	1600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-20	True	NA	-1	True	AATAAA	-21	NA	7837058	7818227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
ES_00058882	chr9	-	3532	8	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	85	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	57.0273833257286	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	-6	True	NA	-10	True	AATAAA	-12	NA	7836973	7818236	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836695
ES_00058883	chr9	-	2658	9	FSM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	0	9	0	-9	multi-exon	FALSE	canonical	3	8	junction_2	6.89202437604511	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAAAATTGATGCTGGG	6	True	NA	NA	False	AATAAA	-25	NA	7873025	7848708	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
ES_00058884	chr9	-	4115	8	FSM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	48.6117479712088	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	15	True	NA	-6	True	AATAAA	-22	NA	8004589	7931999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ES_00058885	chr9	-	4171	9	FSM	ENSMUSG00000053110.14	ENSMUST00000065353.13	4171	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	65.3241915372858	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	7	True	NA	-6	True	AATAAA	-22	NA	8004597	7931999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ES_00058886	chr9	-	1592	7	FSM	ENSMUSG00000053070.6	ENSMUST00000065291.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.38047614284762	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATCGTCAGTTAAAAA	9	True	NA	NA	False	GATAAA	-30	NA	8042824	8021672	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_8022546_8023900_8023968_8025962_8026136_8027101_8027269_8037460_8037537_8042409_8042492_8042670
ES_00058887	chr9	-	3962	11	FSM	ENSMUSG00000040729.9	ENSMUST00000037397.8	3819	11	-144	1	-144	-1	multi-exon	FALSE	canonical	1	3	junction_3	3.74299345444258	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGATCTCTGCTTTTTA	15	True	NA	NA	False	AATAAA	-19	NA	8134439	8076462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_8076948_8079495_8079561_8087228_8087427_8092244_8092318_8095214_8095328_8099732_8101843_8103318_8103518_8112080_8112193_8120642_8120789_8130196_8130317_8134098
ES_00058888	chr9	-	6236	25	NNC	ENSMUSG00000050730.18	novel	6116	23	NA	NA	-238	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_24	14.1729765359606	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTCTTTTGTAGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	9239344	8994329	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9115690_9115763_9155303_9155366_9180027_9180124_9238630_9239022_9239241
ES_00058889	chr9	-	5961	24	NIC	ENSMUSG00000050730.18	novel	6116	23	NA	NA	-12	-269	combination_of_known_junctions	FALSE	canonical	3	46	junction_9	8.11449262420049	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTCAATCTCTCCAG	-3	True	NA	-24	True	NA	NA	NA	9239118	8994598	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9115690_9115763_9155303_9155366_9180027_9180124_9238630
ES_00058890	chr9	-	3385	1	FSM	ENSMUSG00000079083.4	ENSMUST00000110582.4	3223	1	-283	121	-283	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGAACAATTATTAGCAAA	NA	False	NA	NA	False	ATTAAA	-1	NA	13246117	13242732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_13242700_13246100
ES_00058891	chr9	-	2523	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAACAAAGGCTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	13738403	13719089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ES_00058892	chr9	-	2262	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCAGTTTTTAAACT	NA	False	NA	NA	False	TATAAA	-17	NA	13738251	13719120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ES_00058895	chr9	-	1255	7	FSM	ENSMUSG00000031922.13	ENSMUST00000144484.2	1255	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	93.9201788754685	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTCAAAACCACCAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	13738349	13724727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837
ES_00058896	chr9	-	4312	2	FSM	ENSMUSG00000037419.10	ENSMUST00000167549.2	4470	2	143	15	-116	-15	multi-exon	FALSE	canonical	3	20	junction_1	0	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCTGTGGGCTATATG	NA	False	NA	-15	True	NA	NA	NA	14292395	14265300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14269184_14291966
ES_00058897	chr9	-	6757	5	ISM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	59241	0	3286	0	3prime_fragment	FALSE	canonical	3	10	junction_4	3.53553390593274	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTCCTCTTTTACCTTC	NA	False	NA	1	True	AATAAA	-17	NA	14467061	14453261	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869
ES_00058898	chr9	-	2678	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	0	1	0	-1	multi-exon	FALSE	canonical	3	72	junction_2	58.5	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACAGTTGTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	14696152	14690914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14692908_14693910_14694259_14695815
ES_00058899	chr9	-	2239	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	-1202	0	0	multi-exon	FALSE	canonical	3	83	junction_2	53	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695822	14691082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14692908_14693910_14694259_14695756
ES_00058900	chr9	-	3207	2	FSM	ENSMUSG00000031931.5	ENSMUST00000214456.2	3207	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695846	14691082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14694259_14695815
ES_00058901	chr9	-	1753	2	FSM	ENSMUSG00000031931.5	ENSMUST00000034406.4	1753	2	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAATCAAAACAA	NA	False	NA	NA	False	NA	NA	NA	14694260	14691504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14692908_14693910
ES_00058904	chr9	-	267	1	FSM	ENSMUSG00000111817.2	ENSMUST00000216810.2	267	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGCTTACCCTTCTCA	NA	False	NA	NA	False	NA	NA	NA	14719336	14719069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14719100_14719300
ES_00058905	chr9	-	461	1	FSM	ENSMUSG00000059658.6	ENSMUST00000161469.2	348	1	15	-128	15	128	mono-exon	FALSE	NA	NA	NA	NA	NA	1923	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGTTAGACTAAAAGCTA	NA	False	NA	NA	False	AATAAA	-22	NA	14756993	14756532	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14756500_14757000
ES_00058906	chr9	-	5733	5	FSM	ENSMUSG00000031934.15	ENSMUST00000164273.9	5732	5	0	-1	0	1	multi-exon	FALSE	canonical	3	51	junction_1	8.13557004763649	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTGTCTTTCTTGCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	14956774	14913422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14956152
ES_00058907	chr9	-	3964	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGCATAGTGGCATA	NA	False	NA	NA	False	NA	NA	NA	15191227	15171646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
ES_00058908	chr9	-	2652	9	FSM	ENSMUSG00000031938.16	ENSMUST00000178977.9	2650	9	0	-2	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.64005494464026	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTCTTTTCTTTCAT	NA	False	NA	-5	True	AATAAA	-17	NA	15217463	15194632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15217332
ES_00058909	chr9	-	7630	28	FSM	ENSMUSG00000046111.19	ENSMUST00000161132.10	7605	28	-20	-5	-20	0	multi-exon	TRUE	canonical	3	110	junction_2	25.4723282440542	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTGCTGTCCATCCA	9687	False	NA	0	True	AATAAA	-17	NA	15269104	15228210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ES_00058910	chr9	-	7459	28	NIC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	41	-42	intron_retention	FALSE	canonical	3	87	junction_6	27.9548921391772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACACTAGAAACTCCA	9748	False	NA	NA	False	AAAAAG	-31	NA	15269043	15228323	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ES_00058911	chr9	-	7429	28	NNC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	41	-42	intron_retention	FALSE	canonical	3	9	junction_22	36.648817204231	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACACTAGAAACTCCA	9748	False	NA	NA	False	AAAAAG	-31	NA	15269043	15228323	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258263_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ES_00058913	chr9	-	7188	27	FSM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_7	32.7214575925683	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGGTGAAACAGCAAAGA	9707	False	NA	NA	False	NA	NA	NA	15269084	15228392	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ES_00058914	chr9	-	6154	3	FSM	ENSMUSG00000046111.19	ENSMUST00000217407.2	6154	3	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	58.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAAGCTGTCTTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	15235558	15228484	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_15234380_15234864_15235010_15235444
ES_00058915	chr9	-	10249	24	ISM	ENSMUSG00000046111.19	ENSMUST00000161132.10	7605	28	-35	2410	-35	-2057	5prime_fragment	FALSE	canonical	3	121	junction_16	23.6825252830166	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATGGGGTCTTCTTGTC	9672	False	NA	NA	False	ATTAAA	-15	NA	15269119	15230625	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ES_00058917	chr9	-	633	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	42	-67	42	67	multi-exon	FALSE	canonical	3	31	junction_1	0.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGAACATCATTTCAACG	NA	False	NA	NA	False	NA	NA	NA	20296431	20263809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20264138_20265359_20265546_20296312
ES_00058918	chr9	-	12543	9	ISM	ENSMUSG00000063108.16	ENSMUST00000159569.9	11276	10	303	-1287	-30	1287	3prime_fragment	FALSE	canonical	3	62	junction_5	6.557438524302	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCCTTGGTCATAGTGT	NA	False	NA	NA	False	NA	NA	NA	20371153	20338457	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842
ES_00058919	chr9	-	11276	10	FSM	ENSMUSG00000063108.16	ENSMUST00000159569.9	11276	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	14.1499901845274	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGCCTTTTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	20371456	20339744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842_20370958_20371240
ES_00058923	chr9	-	3894	8	ISM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	0	-1231	0	233	intron_retention	FALSE	canonical	3	13	junction_7	7.74333156163866	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGGTGTCACATACCTTT	NA	False	NA	NA	False	NA	NA	NA	20404038	20379611	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681
ES_00058924	chr9	-	6350	10	NIC	ENSMUSG00000060510.15	novel	6283	9	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	23.129800135777	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTAATGTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	20432700	20406363	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20418928_20419020_20419314_20419482_20432315_20432416_20432650
ES_00058925	chr9	-	6448	10	NNC	ENSMUSG00000060510.15	novel	2266	9	NA	NA	-206	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.6807858921673	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAATGTTGTTTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	20432919	20406362	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_20409183_20409213_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432650
ES_00058926	chr9	-	6284	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	0	-1	0	1	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAATGTTGTTTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	20432713	20406362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
ES_00058930	chr9	-	1295	1	FSM	ENSMUSG00000111547.2	ENSMUST00000217520.2	1484	1	50	139	50	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	777	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAACATATTTTGTTTTC	2726	False	NA	NA	False	NA	NA	NA	20518862	20517567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20517600_20518900
ES_00058931	chr9	-	3772	4	FSM	ENSMUSG00000066892.15	ENSMUST00000148631.8	3756	4	5	-21	0	-16	multi-exon	TRUE	canonical	3	9	junction_3	35.3270434653114	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGTTCCTTGCCAGAA	NA	False	NA	20	True	ATTAAA	-42	NA	20556038	20549060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20550495_20553319_20553393_20553499_20555595_20555868
ES_00058932	chr9	-	4166	2	FSM	ENSMUSG00000066892.15	ENSMUST00000131128.2	4182	2	0	16	0	-16	multi-exon	FALSE	canonical	3	93	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGTTCCTTGCCAGAA	NA	False	NA	20	True	ATTAAA	-42	NA	20556051	20549060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20550495_20553319
ES_00058933	chr9	-	2080	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	0	-24	0	-16	multi-exon	FALSE	canonical	3	47	junction_2	23	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGTTCCTTGCCAGAA	NA	False	NA	20	True	ATTAAA	-42	NA	20556063	20549060	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20550495_20553319_20553393_20555490
ES_00058935	chr9	-	1863	6	FSM	ENSMUSG00000032172.9	ENSMUST00000215999.2	1895	6	29	3	29	0	multi-exon	FALSE	canonical	3	29	junction_1	2.92574776766556	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGCCTGGGTTGTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	20657616	20578991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20580081_20582995_20583103_20583430_20583651_20583922_20584070_20586869_20587020_20657466
ES_00058936	chr9	-	3598	36	ISM	ENSMUSG00000004098.8	ENSMUST00000004201.8	6119	67	26461	6	26461	-6	3prime_fragment	FALSE	canonical	2	7	junction_33	3.15115786947708	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTTCTCTTTTTCTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	20699902	20681351	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_20682275_20682366_20682607_20682882_20682952_20683403_20683517_20683600_20683800_20684380_20684435_20685189_20685226_20685309_20685364_20685611_20685720_20685856_20685911_20686326_20686381_20686528_20686637_20686761_20686816_20687129_20687184_20687387_20687442_20687608_20687663_20688287_20688396_20689772_20689827_20689960_20690015_20690096_20690151_20690311_20690366_20691196_20691305_20693103_20693158_20693782_20693837_20693920_20694029_20694779_20694888_20695964_20696019_20696441_20696532_20696668_20696777_20696868_20696923_20697494_20697549_20697646_20697701_20698385_20698431_20698556_20698611_20698826_20698872_20699846
ES_00058937	chr9	-	1504	5	NNC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1839	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	45.3176290200624	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20789184	20785103	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20788582
ES_00058938	chr9	-	1237	5	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1345	-1	1345	1	3prime_fragment	FALSE	canonical	3	59	junction_4	28.1646942110153	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTCTGTCTTCCTGTG	NA	False	NA	-4	True	NA	NA	NA	20789678	20785102	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
ES_00058939	chr9	-	1101	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	0	0	0	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5139	False	NA	-1	True	AGTAAA	-16	NA	20809919	20805644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
ES_00058940	chr9	-	766	7	FSM	ENSMUSG00000070319.7	ENSMUST00000213454.2	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	2505	junction_4	85.8087343391621	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGCAGGCCGCCCAGAGC	5156	False	NA	NA	False	GGGGCT	-45	NA	20809902	20806483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673
ES_00058941	chr9	-	729	4	FSM	ENSMUSG00000070319.7	ENSMUST00000216133.2	729	4	0	0	0	0	multi-exon	FALSE	canonical	3	2505	junction_2	92.9743094742963	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACATTCATCACTAGCAA	5180	False	NA	NA	False	NA	NA	NA	20809878	20807435	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20807517_20809002_20809063_20809183_20809273_20809379
ES_00058942	chr9	-	5806	39	FSM	ENSMUSG00000004099.17	ENSMUST00000178110.3	5870	39	64	0	46	0	multi-exon	TRUE	canonical	2	13	junction_38	182.859619877428	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20863855	20818504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20863141
ES_00058943	chr9	-	5245	39	NIC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	490	junction_35	108.724460496474	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20864156	20818504	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20864003
ES_00058944	chr9	-	5367	39	FSM	ENSMUSG00000004099.17	ENSMUST00000004202.17	5367	39	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_35	116.269340570878	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20864275	20818504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
ES_00058945	chr9	-	5513	39	FSM	ENSMUSG00000004099.17	ENSMUST00000216540.2	5543	39	30	0	30	0	multi-exon	FALSE	canonical	2	13	junction_38	187.220863319369	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTCACCCAGAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	20863871	20818816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20863141
ES_00058946	chr9	-	6362	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	0	32	0	-32	multi-exon	FALSE	canonical	3	250	junction_1	0	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAATAAAGGCAAGCAT	8094	False	NA	NA	False	NA	NA	NA	20888077	20873688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20879867_20887893
ES_00058947	chr9	-	207	1	Intergenic	novelGene_4073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCACTTAAGTTAGTAC	7336	False	NA	NA	False	NA	NA	NA	20945523	20945316	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_20945300_20945500
ES_00058948	chr9	-	1960	7	FSM	ENSMUSG00000111692.2	ENSMUST00000213826.2	1945	7	0	-15	0	15	multi-exon	FALSE	canonical	3	10	junction_1	150.429847067957	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATGTTTTACTTTAGA	NA	False	NA	NA	False	AATAAA	-29	NA	20984392	20973680	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235_20979222_20979325_20979414_20984370
ES_00058949	chr9	-	818	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	0	-6	0	6	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGTTTTGTGTCCTTGG	NA	False	NA	-1	True	AATAAA	-18	NA	20984840	20978809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
ES_00058951	chr9	-	3470	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGCTGGCTGGTTCTTG	NA	False	NA	-2	True	ATTAAA	-31	NA	21003304	20985453	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
ES_00058952	chr9	-	4444	20	FSM	ENSMUSG00000032175.12	ENSMUST00000213717.2	4444	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	31.1890846734893	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTGTTGCTTGCATTT	NA	False	NA	-2	True	NA	NA	NA	21042476	21015363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026667_21027327_21027428_21027538_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ES_00058953	chr9	-	4830	25	FSM	ENSMUSG00000032175.12	ENSMUST00000216874.2	4828	25	0	-2	0	0	multi-exon	FALSE	canonical	1	1	junction_20	22.1345318450606	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTGTTGCTTGCATTT	NA	False	NA	-2	True	NA	NA	NA	21042528	21015363	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035506_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ES_00058954	chr9	-	4805	25	FSM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	-29	-6	-29	4	multi-exon	FALSE	canonical	3	60	junction_24	14.2647949512077	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTGCTTGCATTTTGGG	NA	False	NA	2	True	NA	NA	NA	21042568	21015359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ES_00058955	chr9	-	1662	5	FSM	ENSMUSG00000032175.12	ENSMUST00000214864.2	1662	5	1	-1	1	1	multi-exon	FALSE	canonical	3	60	junction_4	20.5106679559687	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGCCTTACTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	21042538	21034753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ES_00058957	chr9	-	7851	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	0	0	0	0	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGTCATGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21061278	21044517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
ES_00058958	chr9	-	3312	7	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	-98	20875	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.0428688697272	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACGTGGGAAAGGTGG	NA	False	NA	NA	False	NA	NA	NA	21150755	21120150	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21120187_21141027_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
ES_00058959	chr9	-	3613	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	-448	7	-158	-7	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTGGGTGTGGCTCTGA	NA	False	NA	-7	True	AATAAA	-10	NA	21150815	21141033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ES_00058960	chr9	-	3243	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	-79	-13	-50	13	multi-exon	FALSE	canonical	3	33	junction_5	41.5143348736313	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCTGACATGTATGAGC	NA	False	NA	14	True	AATAAA	-31	NA	21150707	21141012	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
ES_00058961	chr9	-	3614	5	FSM	ENSMUSG00000003308.16	ENSMUST00000164812.8	3614	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	9.14808723176599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCGTCTATTGTCTCTG	NA	False	NA	-9	True	AATACA	-28	NA	21150109	21141362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366
ES_00058962	chr9	-	2598	19	FSM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_10	26.4070697604511	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCATCCCTTCCCA	NA	False	NA	-9	True	AATAAA	-19	NA	21199265	21184752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
ES_00058963	chr9	-	506	2	FSM	ENSMUSG00000035047.10	ENSMUST00000184410.2	506	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCAGCCTACGAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	21186689	21185163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21185545_21186564
ES_00058965	chr9	-	1427	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	0	-4	0	4	multi-exon	FALSE	canonical	3	236	junction_1	0	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTCAGATTTAGGAGTC	NA	False	NA	NA	False	ATTAAA	-16	NA	21202604	21199701	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21200629_21202104
ES_00058966	chr9	-	1709	11	FSM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	0	-3	0	3	multi-exon	FALSE	canonical	3	12	junction_6	5.23545604508337	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGTGTGCTTCTTGGGT	1345	False	NA	-1	True	ATTAAA	-15	NA	21223607	21206753	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
ES_00058967	chr9	-	1340	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	40	-2	22	0	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	3457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421508	21418848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
ES_00058968	chr9	-	1217	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	0	-4	0	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421483	21418848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21419688_21420226_21420411_21421289
ES_00058969	chr9	-	1013	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCCCCACCCTCCA	NA	False	NA	NA	False	NA	NA	NA	21421530	21419162	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
ES_00058970	chr9	-	1544	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	-65	-25	0	25	multi-exon	FALSE	canonical	3	564	junction_2	0.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCTTGGGACAGACCTA	NA	False	NA	22	True	NA	NA	NA	21421548	21418823	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21419688_21420226_21420648_21421289
ES_00058971	chr9	-	260	2	Antisense	novelGene_ENSMUSG00000057191.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATGTTAAATCCCT	NA	False	NA	NA	False	NA	NA	NA	21444419	21438546	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_21438752_21444364
ES_00058973	chr9	-	2018	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	0	-4	0	0	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6086	False	NA	-16	True	AATAAA	-17	NA	21504106	21499977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ES_00058974	chr9	-	2174	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.8062591493682	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6068	False	NA	-16	True	AATAAA	-17	NA	21504124	21499977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ES_00058975	chr9	-	1376	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	0	-10	0	10	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGCAGCATGGTGGGT	NA	False	NA	NA	False	NA	NA	NA	21671599	21666727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
ES_00058976	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_2	208.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671578	21667303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21668691_21668980_21669126_21671414
ES_00058977	chr9	-	801	3	FSM	ENSMUSG00000074476.7	ENSMUST00000213665.2	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_1	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGTTCATTGATTTATCT	NA	False	NA	-20	True	ATTAAA	-14	NA	21669115	21667397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21667592_21668412_21668490_21668585
ES_00058978	chr9	-	723	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	-96	0	0	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671599	21667303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
ES_00058979	chr9	-	211	1	Intergenic	novelGene_4079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCCAAAAATTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	21676582	21676371	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_21676400_21676600
ES_00058980	chr9	-	5054	12	FSM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	0	-14	0	14	multi-exon	FALSE	canonical	0	0	junction_11	126.069113932015	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTCTCCTTCTTTTT	NA	False	NA	2	True	AATAAA	-29	NA	21710040	21678065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
ES_00058981	chr9	-	6880	50	FSM	ENSMUSG00000032198.10	ENSMUST00000217336.2	6880	50	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_32	51.5830850236596	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTCTCCTCTTTCTC	6256	False	NA	NA	False	NA	NA	NA	21763931	21711155	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00058982	chr9	-	6414	48	NIC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	55.3456728556795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6282	False	NA	NA	False	TTTAAA	-18	NA	21763905	21711475	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00058983	chr9	-	6467	49	FSM	ENSMUSG00000032198.10	ENSMUST00000034728.9	6467	49	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_31	48.2352452972812	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6256	False	NA	NA	False	TTTAAA	-18	NA	21763931	21711475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00058986	chr9	-	1873	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	0	-5	0	5	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTCTGTTCTCTTTTAT	6275	False	NA	-1	True	NA	NA	NA	21763912	21748639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00058987	chr9	-	1037	6	FSM	ENSMUSG00000032198.10	ENSMUST00000213775.2	1324	6	0	287	0	-287	multi-exon	FALSE	canonical	3	199	junction_1	8.83176086632785	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACGCTGTATACACGGAT	6275	False	NA	NA	False	NA	NA	NA	21763912	21755213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00058988	chr9	-	3793	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	42	0	-11	0	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTATATTGCTTAATTT	2275	False	NA	NA	False	AATAAA	-25	NA	21829446	21818786	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
ES_00058989	chr9	-	789	4	FSM	ENSMUSG00000040883.19	ENSMUST00000046831.11	785	4	0	-4	0	3	multi-exon	FALSE	canonical	3	136	junction_3	45.9879211194514	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGGTCATTTTTTTCAC	NA	False	NA	-2	True	AATAAA	-17	NA	21838758	21832300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838587
ES_00058990	chr9	-	867	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	0	-5	0	3	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGGTCATTTTTTTCAC	NA	False	NA	-2	True	AATAAA	-17	NA	21838831	21832300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
ES_00058993	chr9	-	659	3	FSM	ENSMUSG00000006235.7	ENSMUST00000213181.2	659	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	3.5	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCGGCAGGCAACCGGGC	NA	False	NA	NA	False	NA	NA	NA	21873860	21872779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21872902_21872986_21873163_21873499
ES_00058994	chr9	-	2184	13	FSM	ENSMUSG00000039632.14	ENSMUST00000044926.6	2197	13	13	0	13	0	multi-exon	FALSE	canonical	1	2	junction_6	2.13924960883224	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGTATTCACCTCTTT	4217	False	NA	NA	False	AATAAA	-16	NA	21913917	21901166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904321_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
ES_00058995	chr9	-	2187	13	FSM	ENSMUSG00000039632.14	ENSMUST00000115336.10	2103	13	-84	0	13	0	multi-exon	FALSE	canonical	1	3	junction_3	2.0138409955991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGTATTCACCTCTTT	4217	False	NA	NA	False	AATAAA	-16	NA	21913917	21901166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904324_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
ES_00058996	chr9	-	883	3	FSM	ENSMUSG00000039632.14	ENSMUST00000214420.2	903	3	13	7	13	-7	multi-exon	FALSE	canonical	2	6	junction_2	2	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATGTAAACCTGTAGTGT	4217	False	NA	NA	False	AGTAAA	-9	NA	21913917	21908874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21909260_21909340_21909463_21913541
ES_00058997	chr9	-	2113	9	FSM	ENSMUSG00000038895.17	ENSMUST00000043922.7	2108	9	0	-5	0	5	multi-exon	FALSE	canonical	3	20	junction_5	12.3129758791285	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGGATAATTGTGGGCA	9457	False	NA	4	True	ATTAAA	-27	NA	21982641	21966750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21967190_21967288_21967389_21967709_21967825_21968582_21968695_21968796_21968975_21969099_21969712_21976996_21977213_21979443_21979488_21982344
ES_00058998	chr9	-	1472	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	0	-10	0	10	multi-exon	FALSE	canonical	3	16	junction_7	78.0418516710419	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCTTCCCTTCGTATG	5921	False	NA	1	True	AATAAA	-25	NA	21996698	21983531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
ES_00058999	chr9	-	2055	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	0	-382	0	382	multi-exon	TRUE	canonical	3	105	junction_8	44.5222907654132	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCATCACCTTACCTGCA	5896	False	NA	NA	False	NA	NA	NA	21996723	21983159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
ES_00059000	chr9	-	2058	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	0	-382	0	382	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCATCACCTTACCTGCA	5885	False	NA	NA	False	NA	NA	NA	21996734	21983159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
ES_00059001	chr9	-	1526	8	NIC	ENSMUSG00000066839.13	novel	1673	9	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_6	84.8771020298148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5925	False	NA	-9	True	AATAAA	-15	NA	21996694	21983541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21995318_21995505_21996644
ES_00059003	chr9	-	893	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	-5	0	3	multi-exon	FALSE	canonical	3	357	junction_2	52.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTGTACTTCTTGGATA	7944	False	NA	-3	True	AATAAA	-20	NA	22028468	22024281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22024976_22025103_22025240_22028405
ES_00059004	chr9	-	1259	3	FSM	ENSMUSG00000013822.8	ENSMUST00000213233.2	810	3	0	-449	0	0	multi-exon	FALSE	canonical	1	3	junction_2	229.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCGCTGTACTTCTTGG	8030	False	NA	-6	True	AATAAA	-17	NA	22028382	22024284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22024976_22025103_22025240_22027950
ES_00059005	chr9	-	1436	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	0	-17	0	6	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCATCAAGGTTAAAATGC	9074	False	NA	-13	True	AATAAA	-27	NA	22042949	22038016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
ES_00059006	chr9	-	1362	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	0	-6	0	6	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCATCAAGGTTAAAATGC	8912	False	NA	-13	True	AATAAA	-27	NA	22043111	22038016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
ES_00059007	chr9	-	1331	5	NNC	ENSMUSG00000001348.16	novel	1356	5	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	9084	False	NA	-19	True	AATAAA	-21	NA	22042939	22038022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
ES_00059008	chr9	-	751	2	Genic_Genomic	ENSMUSG00000061167.10	novel	615	1	NA	NA	-41	47447	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAAGAAAGCT	NA	False	NA	NA	False	NA	NA	NA	22097558	22049455	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_22049485_22096836
ES_00059009	chr9	-	615	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	22097517	22096902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22096900_22097500
ES_00059010	chr9	-	225	1	Intergenic	novelGene_4082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATTATGGGAATAACTAA	1709	False	NA	NA	False	AATACA	-7	NA	22134068	22133843	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_22133800_22134100
ES_00059011	chr9	-	3574	5	FSM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	12.747548783982	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAGTCTGAGATGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	22171191	22158725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22161837_22162823_22162928_22165150_22165244_22169340_22169468_22171052
ES_00059012	chr9	-	3295	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	-54	-3	-44	3	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTAAATTAAGCATTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	22218988	22188040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
ES_00059014	chr9	-	273	1	FSM	ENSMUSG00000094627.3	ENSMUST00000178676.3	273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTACATTTTTGATAA	7418	False	NA	NA	False	AAAACA	-43	NA	22232673	22232400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22232400_22232700
ES_00059015	chr9	-	4648	25	NIC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_4	113.4790423627	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	7194	False	NA	-3	True	AATAAA	-20	NA	22300473	22243307	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22260542_22260597_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
ES_00059016	chr9	-	4605	24	FSM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_4	55.8021416884086	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	7183	False	NA	-3	True	AATAAA	-20	NA	22300484	22243307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
ES_00059018	chr9	-	245	2	Antisense	novelGene_ENSMUSG00000036411.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	555	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAATAACAGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	22331090	22319065	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_22319259_22331038
ES_00059019	chr9	-	1171	7	NNC	ENSMUSG00000032239.11	novel	1134	6	NA	NA	0	-10880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.439948360314	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTTAGACAACAGGTGAA	9510	False	NA	NA	False	NA	NA	NA	22379644	22333222	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_22333260_22359606_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
ES_00059020	chr9	-	1209	7	NNC	ENSMUSG00000032239.11	novel	1134	6	NA	NA	-29	-10880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.439948360314	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTTAGACAACAGGTGAA	9471	False	NA	NA	False	NA	NA	NA	22379683	22333222	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_22333259_22359606_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
ES_00059022	chr9	-	572	1	FSM	ENSMUSG00000089958.2	ENSMUST00000160140.2	795	1	236	-13	236	13	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGGAGCAGTGTGAACT	NA	False	NA	NA	False	NA	NA	NA	22581588	22581016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22581000_22581600
ES_00059023	chr9	-	3493	23	FSM	ENSMUSG00000043067.16	ENSMUST00000142064.8	3489	23	0	-4	0	2	multi-exon	TRUE	canonical	3	87	junction_1	49.1071732317176	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTTTTCTGCCTGCT	NA	False	NA	-1	True	AATAAA	-23	NA	24414436	24323069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_24324283_24325533_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309_24396398_24397000_24397026_24414134
ES_00059024	chr9	-	4715	22	FSM	ENSMUSG00000043067.16	ENSMUST00000170356.2	4715	22	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	22.7832137753209	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAACATG	NA	False	NA	-30	True	NA	NA	NA	24414436	24323098	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309_24396398_24397000_24397026_24414134
ES_00059025	chr9	-	404	1	FSM	ENSMUSG00000066809.2	ENSMUST00000086236.2	78	1	-30	-296	-30	296	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTGAACAGTGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	25012807	25012403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_25012400_25012800
ES_00059026	chr9	-	2788	8	FSM	ENSMUSG00000008429.9	ENSMUST00000008573.9	2781	8	2	-9	2	9	multi-exon	FALSE	canonical	3	81	junction_2	20.4550278236258	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGGATATTTATTCAAG	NA	False	NA	NA	False	AATAAA	-23	NA	25063114	25019418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_25020302_25020735_25020851_25021706_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
ES_00059027	chr9	-	2615	8	NNC	ENSMUSG00000008429.9	novel	2781	8	NA	NA	23	8	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	36.7145636454183	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATGGGATATTTATTCAA	NA	False	NA	NA	False	AATAAA	-22	NA	25062971	25019419	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_25020302_25020735_25020851_25021735_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
ES_00059028	chr9	-	3668	19	FSM	ENSMUSG00000036395.16	ENSMUST00000066560.13	3688	19	21	-1	-15	0	multi-exon	FALSE	canonical	3	9	junction_2	5.66884489725515	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTTTGTGTCTGGGGA	NA	False	NA	NA	False	AATAAA	-16	NA	26717743	26674339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_26676120_26676397_26676515_26676875_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681174_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703187_26705378_26705475_26706081_26706151_26707701_26707900_26717593
ES_00059029	chr9	-	1114	1	FSM	ENSMUSG00000111151.2	ENSMUST00000215231.2	2414	1	550	750	550	-750	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGCATCACAAAAGGAGA	7268	False	NA	NA	False	NA	NA	NA	26873305	26872191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_26872200_26873300
ES_00059031	chr9	-	2867	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	1	-9	1	0	multi-exon	FALSE	canonical	3	181	junction_10	23.6862829502647	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCATGTTACGTGTATG	9249	False	NA	NA	False	AGTAAA	-34	NA	26910844	26885430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
ES_00059032	chr9	-	2894	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCATTTTGAAAAAATTTA	9231	False	NA	NA	False	AGTAAA	-15	NA	26910862	26885449	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
ES_00059035	chr9	-	3575	6	FSM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	12.273548794053	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATTCTGTGGTCTTTCCT	NA	False	NA	-3	True	ATTAAA	-42	NA	26941361	26919066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_26921334_26921659_26921803_26924020_26924197_26926452_26926618_26930613_26930771_26940694
ES_00059036	chr9	-	1944	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	-2	0	2	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTTGTATTTTTTTTTT	NA	False	NA	1	True	ATTAAA	-16	NA	27066689	27008677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
ES_00059037	chr9	-	1953	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5152	-1	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_8	47.0729155141255	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATGTTTGTATTTTTTT	NA	False	NA	-2	True	ATTAAA	-13	NA	27032694	27008680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
ES_00059038	chr9	-	2025	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4313	1	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTTGTATTTTTTTTT	NA	False	NA	0	True	ATTAAA	-15	NA	27033533	27008678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
ES_00059040	chr9	-	334	3	FSM	ENSMUSG00000111673.2	ENSMUST00000216803.2	706	3	0	372	0	-372	multi-exon	FALSE	canonical	1	1	junction_2	1	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGAAGTTGGTGCTGCC	1199	False	NA	NA	False	NA	NA	NA	30921359	30897634	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_30897758_30897918_30898029_30921258
ES_00059041	chr9	-	326	2	Intergenic	novelGene_4094	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCTTAGTCTATTT	NA	False	NA	NA	False	AATAAA	-14	NA	30940814	30940268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_30940444_30940663
ES_00059042	chr9	-	3259	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31043149	31000697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
ES_00059043	chr9	-	3807	1	FSM	ENSMUSG00000031995.10	ENSMUST00000217404.2	3550	1	263	-520	263	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTGCATAGGAGACTGAA	4164	False	NA	NA	False	NA	NA	NA	31014571	31010764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31010800_31014600
ES_00059044	chr9	-	3479	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	-17	0	17	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTTCGATCTATGCT	8743	False	NA	8	True	AATAAA	-36	NA	31123083	31060835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ES_00059045	chr9	-	3651	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	-17	0	17	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTTCGATCTATGCT	8739	False	NA	8	True	AATAAA	-36	NA	31123087	31060835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ES_00059046	chr9	-	3521	17	FSM	ENSMUSG00000031996.18	ENSMUST00000079758.9	3504	17	0	-17	0	17	multi-exon	FALSE	canonical	3	24	junction_5	460.436596476648	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTTCGATCTATGCT	8737	False	NA	8	True	AATAAA	-36	NA	31123089	31060835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31067485_31067522_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ES_00059049	chr9	-	676	1	FSM	ENSMUSG00000111548.2	ENSMUST00000213951.2	665	1	-14	3	-14	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGCGGGATGCCAGTT	NA	False	NA	NA	False	NA	NA	NA	31346017	31345341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31345300_31346000
ES_00059050	chr9	-	1628	1	FSM	ENSMUSG00000091639.3	ENSMUST00000169182.3	1355	1	-104	-169	-104	169	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTCAACAATGTTAAAAATC	NA	False	NA	NA	False	AGTAAA	-31	NA	31848200	31846572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31846600_31848200
ES_00059053	chr9	-	224	2	Intergenic	novelGene_4100	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTAACCCGGGCTAGTAA	NA	False	NA	NA	False	CATAAA	-41	NA	35135286	35076315	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_35076513_35135259
ES_00059054	chr9	-	4664	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176685.8	1783	7	64	-2945	22	152	multi-exon	FALSE	canonical	3	40	junction_5	13.6065752079239	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTGTAAATGACTATTT	7999	False	NA	NA	False	ATTAAA	-16	NA	35111202	35095694	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
ES_00059057	chr9	-	2195	11	NIC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	56.4645021230153	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCAGCCTCTTGAGAGT	NA	False	NA	NA	False	NA	NA	NA	35122264	35115506	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119279_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ES_00059060	chr9	-	1860	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6364	False	NA	NA	False	TATAAA	-14	NA	35179101	35128315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ES_00059063	chr9	-	6368	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	7	559	7	-559	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCTCTTCATTTGAT	NA	False	NA	NA	False	NA	NA	NA	35469817	35448501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
ES_00059064	chr9	-	1983	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	0	-10	0	10	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTTTAAATACTTCCC	NA	False	NA	61	True	ATTAAA	-27	NA	35481694	35472105	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
ES_00059065	chr9	-	4274	2	FSM	ENSMUSG00000050555.10	ENSMUST00000132547.2	4269	2	0	-5	0	5	multi-exon	FALSE	canonical	3	290	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAAGGAAAAACTTTTA	NA	False	NA	NA	False	CATAAA	-1	NA	35481393	35475748	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35479802_35481172
ES_00059067	chr9	-	3397	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGACAGCTATATTTACA	648	False	NA	NA	False	NA	NA	NA	36637954	36619777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ES_00059068	chr9	-	2142	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	721	False	NA	NA	False	ATTAAA	-12	NA	36637881	36620735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
ES_00059069	chr9	-	508	3	FSM	ENSMUSG00000032113.17	ENSMUST00000173977.2	508	3	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_2	57	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGCTGACCTTGAACT	736	False	NA	NA	False	NA	NA	NA	36637866	36634898	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36635317_36637092_36637175_36637858
ES_00059070	chr9	-	5868	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	0	-1	0	1	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGACTGCTTTTTTCAG	NA	False	NA	0	True	ATTAAA	-17	NA	36678975	36640638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
ES_00059074	chr9	-	2309	11	FSM	ENSMUSG00000062762.18	ENSMUST00000163192.11	2309	11	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_10	155.462664328127	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708569	36690454	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708299
ES_00059079	chr9	-	3555	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	77	0	-8	0	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	-5	True	AGTAAA	-19	NA	37058626	36802277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
ES_00059081	chr9	-	3637	16	FSM	ENSMUSG00000034303.9	ENSMUST00000239439.2	3525	16	9	-121	-2	121	multi-exon	FALSE	canonical	2	5	junction_9	5.33166640616859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCACCTCACTGACACAG	NA	False	NA	NA	False	NA	NA	NA	37259679	37187009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_37187862_37188653_37188778_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259329
ES_00059082	chr9	-	3153	15	NIC	ENSMUSG00000034303.9	novel	3331	16	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	5.94575822047336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTGCTATTCC	NA	False	NA	NA	False	AATAAA	-16	NA	37259677	37187133	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_37187862_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259563
ES_00059084	chr9	-	660	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	32	4	32	-4	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTTGTGGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	37524986	37514589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
ES_00059089	chr9	-	1466	1	FSM	ENSMUSG00000110964.2	ENSMUST00000216399.2	2614	1	563	585	563	-585	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTAATTGCCTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	38850835	38849369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_38849400_38850800
ES_00059090	chr9	-	1513	1	FSM	ENSMUSG00000049073.8	ENSMUST00000060345.6	1116	1	0	-397	0	-219	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCTCAATGAGACTAGTC	NA	False	NA	NA	False	NA	NA	NA	40039335	40037822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_40037800_40039300
ES_00059091	chr9	-	367	3	Antisense	novelGene_ENSMUSG00000025602.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_2	7	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATATTGGCTCAAAGCT	NA	False	NA	NA	False	CATAAA	-20	NA	40151187	40107262	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_40107440_40108832_40108959_40151123
ES_00059092	chr9	-	689	4	Antisense	novelGene_ENSMUSG00000025602.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	17.1464281994822	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAATATGTTTCCTTAT	NA	False	NA	11	True	AATAAA	-32	NA	40151182	40107033	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_40107440_40108832_40108959_40121021_40121120_40151123
ES_00059093	chr9	-	471	4	Antisense	novelGene_ENSMUSG00000025602.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	24.1430919496424	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATTCTTGACTGTTGTC	NA	False	NA	NA	False	ATTAAA	-20	NA	40151215	40108199	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_40108355_40108832_40108959_40121021_40121120_40151123
ES_00059094	chr9	-	7126	20	NNC	ENSMUSG00000040111.18	novel	7488	20	NA	NA	-12634	1	intron_retention	FALSE	canonical	2	9	junction_19	5.57795423136496	491	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATGGTGTGTGTGTGTG	7481	False	NA	NA	False	ATTAAA	-27	NA	40325799	40204533	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588_40219779_40221193_40221351_40223053_40223170_40226262_40226344_40226983_40227080_40228160_40228265_40228804_40228890_40238713_40238735_40244740_40244952_40324592_40324671_40325685
ES_00059095	chr9	-	10721	48	FSM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	0	-6	0	6	multi-exon	TRUE	canonical	3	333	junction_27	73.2507244219374	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGCAGCCGATTTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	42035593	41876009	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900000_41900106_41900649_41900763_41902607_41902778_41902914_41903042_41903599_41903732_41907466_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964_41943212_41944860_41944953_41946738_41946871_41948344_41948518_41952288_41952375_41952859_41952989_41955202_41955390_41957778_41957958_41968566_41968656_41975010_41975085_41975282_41975401_41979092_41979286_41982367_41982538_41983540_41983643_41993083_41993265_42001240_42001309_42003604_42003767_42010440_42010567_42017723_42017841_42035124
ES_00059096	chr9	-	4870	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	-55	-3138	0	0	multi-exon	FALSE	canonical	3	15	junction_5	75.9910521048367	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATTGTGTGGACCTGT	NA	False	NA	-1	True	NA	NA	NA	42175551	42162890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
ES_00059097	chr9	-	4848	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	-57	-4	-57	4	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGACCTGTGTTT	NA	False	NA	3	True	NA	NA	NA	42175609	42162886	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
ES_00059098	chr9	-	5004	8	FSM	ENSMUSG00000037287.16	ENSMUST00000066148.12	5000	8	0	-4	0	4	multi-exon	FALSE	canonical	3	34	junction_7	5.55124549363584	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTCTGAGTGTTTCTT	NA	False	NA	3	True	ATTAAA	-21	NA	42383554	42323607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42361219_42361360_42362908_42363059_42383361
ES_00059099	chr9	-	435	2	Intergenic	novelGene_4112	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTTCAGATCCCCCAG	NA	False	NA	NA	False	AAAAAG	-1	NA	42600852	42600320	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_42600590_42600686
ES_00059100	chr9	-	10875	40	NIC	ENSMUSG00000059495.15	novel	10059	42	NA	NA	-187	-3	intron_retention	FALSE	canonical	2	9	junction_32	5.59632639907851	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTATGTGACTTTTTCT	NA	False	NA	-5	True	ATTAAA	-15	NA	43017469	42875141	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919405_42921474_42921550_42927198_42927340_42929347_42929468_42929630_42929709_42931900_42932080_42934110_42934169_42937475_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
ES_00059101	chr9	-	325	2	FSM	ENSMUSG00000059495.15	ENSMUST00000214175.2	848	2	523	0	523	0	multi-exon	FALSE	canonical	3	22	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTCACCTTTGTTCTTG	5903	False	NA	NA	False	AATAAA	-13	NA	42938591	42937299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42937526_42938492
ES_00059102	chr9	-	3484	3	FSM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	18	1	-8	-1	multi-exon	FALSE	canonical	3	19	junction_1	3	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGCCTTCGTATCTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	43027847	43019945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_43023154_43024755_43024956_43027771
ES_00059103	chr9	-	3458	4	NNC	ENSMUSG00000048503.8	novel	3503	3	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.6562449087639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGCCTTCGTATCTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	43027841	43019945	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_43021276_43021295_43023154_43024755_43024956_43027771
ES_00059104	chr9	-	2815	13	NNC	ENSMUSG00000032015.17	novel	2522	13	NA	NA	5478	6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	21.2895057611856	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCAGAGGAGTGTTTTAT	5099	False	NA	NA	False	CATAAA	-23	NA	43111574	43035227	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43111185
ES_00059105	chr9	-	2752	13	FSM	ENSMUSG00000032015.17	ENSMUST00000176636.5	2522	13	-224	-6	-224	6	multi-exon	FALSE	canonical	3	54	junction_12	13.5359603361646	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCAGAGGAGTGTTTTAT	NA	False	NA	NA	False	CATAAA	-23	NA	43117276	43035227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43116950
ES_00059106	chr9	-	1862	4	FSM	ENSMUSG00000032014.7	ENSMUST00000034512.7	2526	4	0	664	0	568	multi-exon	FALSE	canonical	3	37	junction_2	2.62466929133727	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGCCAGCTTAGGCTTT	NA	False	NA	1	True	AATAAA	-26	NA	43151208	43133195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_43134137_43135193_43135375_43136172_43136308_43150603
ES_00059110	chr9	-	1258	1	ISM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	89816	0	2022	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTCTGGTTCACTTG	NA	False	NA	0	True	AATAAA	-21	NA	44055530	44054272	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_44054300_44055500
ES_00059111	chr9	-	11329	16	FSM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	43	0	-10	0	multi-exon	TRUE	canonical	1	3	junction_5	3.59382185918495	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTCTGGTTCACTTG	2957	False	NA	0	True	AATAAA	-21	NA	44145303	44054272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44063035_44064085_44064266_44065057_44065156_44065486_44065628_44067912_44068008_44069810_44070189_44070273_44070406_44074635_44074840_44075422_44075555_44076098_44076187_44077749_44077888_44078506_44078629_44080316_44080474_44084549_44084697_44112256_44112505_44144996
ES_00059112	chr9	-	5323	10	FSM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	10	0	10	0	multi-exon	FALSE	canonical	3	40	junction_7	6.83852557930183	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGAGTGTGGTGGTGCC	NA	False	NA	-2	True	NA	NA	NA	44216958	44203736	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
ES_00059114	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	1408	False	NA	9	True	AATAAA	-33	NA	44255525	44247635	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ES_00059116	chr9	-	3528	16	FSM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	1	7	1	-7	multi-exon	FALSE	canonical	0	0	junction_10	77.9168787875901	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCGCTGCCTTCTGGA	6379	False	NA	NA	False	AATATA	-9	NA	44272966	44259052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
ES_00059117	chr9	-	3321	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	59.6119302004408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCGCCCTCAGGTGAC	6414	False	NA	-31	True	NA	NA	NA	44272931	44259224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
ES_00059120	chr9	-	778	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	37	3	37	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAATGAGTATTCAT	NA	False	NA	NA	False	NA	NA	NA	44290710	44289932	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44289900_44290700
ES_00059121	chr9	-	877	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	0	58	0	3	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTCCTAACTGATCAT	1967	False	NA	-5	True	AATAAA	-20	NA	44318403	44315052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
ES_00059122	chr9	-	1222	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	0	-2	0	2	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCTCCTAACTGATCA	1473	False	NA	-6	True	AATAAA	-19	NA	44318897	44315053	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
ES_00059123	chr9	-	1185	4	FSM	ENSMUSG00000032112.11	ENSMUST00000217163.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	146.917210246678	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	1741	False	NA	-10	True	AATAAA	-15	NA	44318629	44315057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44315758_44316539_44316644_44318100_44318276_44318423
ES_00059124	chr9	-	380	1	FSM	ENSMUSG00000032112.11	ENSMUST00000215731.2	1339	1	944	15	624	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAACCCTGTCTCAAAAA	2655	False	NA	NA	False	NA	NA	NA	44317715	44317335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44317300_44317700
ES_00059125	chr9	-	892	3	FSM	ENSMUSG00000043923.9	ENSMUST00000215402.2	877	3	0	-15	0	13	multi-exon	FALSE	canonical	3	58	junction_1	5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTGTAAAACAAACAAAAAAA	NA	False	NA	13	True	AATAAA	-34	NA	44322527	44321442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44321662_44321744_44321878_44321987
ES_00059126	chr9	-	1725	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGATTGAACCTGTAAA	8410	False	NA	0	True	AATAAA	-21	NA	44329866	44321455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ES_00059132	chr9	-	2675	5	FSM	ENSMUSG00000043923.9	ENSMUST00000213813.2	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	8.04285397107271	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGGAATACA	8940	False	NA	NA	False	NA	NA	NA	44329336	44322656	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ES_00059133	chr9	-	886	3	ISM	ENSMUSG00000074397.6	ENSMUST00000215980.2	676	4	-229	225	-108	-225	5prime_fragment	FALSE	canonical	3	31	junction_1	2.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGACCTGGACCCTGGGG	9106	False	NA	-5	True	AATAAA	-17	NA	44352541	44347076	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_44347400_44347500_44347576_44352053
ES_00059134	chr9	-	1672	5	FSM	ENSMUSG00000041523.4	ENSMUST00000047740.4	1083	5	22	-611	22	611	multi-exon	FALSE	canonical	3	6	junction_2	1.4790199457749	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTGTTTTTTTGAAGC	8975	False	NA	NA	False	NA	NA	NA	44366251	44363400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44364407_44364779_44364851_44365091_44365231_44365358_44365491_44365927
ES_00059135	chr9	-	1335	1	FSM	ENSMUSG00000111312.2	ENSMUST00000215551.2	2290	1	939	16	939	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATGATAAATTAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	44394161	44392826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44392800_44394200
ES_00059137	chr9	-	3522	16	ISM	ENSMUSG00000048537.17	ENSMUST00000144251.8	3589	17	1317	0	-977	0	3prime_fragment	FALSE	canonical	1	2	junction_13	10.461782299823	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	NA	False	NA	0	True	AATAAA	-18	NA	44623220	44597604	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690_44619820_44622219_44622358_44622444_44622586_44622937
ES_00059139	chr9	-	786	6	FSM	ENSMUSG00000048537.17	ENSMUST00000123310.8	786	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	5.85149553533112	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGGCAGCAGGTGGTGAG	NA	False	NA	NA	False	NA	NA	NA	44615405	44609030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357
ES_00059140	chr9	-	363	3	FSM	ENSMUSG00000048537.17	ENSMUST00000126818.8	539	3	176	0	176	0	multi-exon	FALSE	canonical	2	5	junction_2	1.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATGATTCCAGCAGG	NA	False	NA	NA	False	NA	NA	NA	44638471	44629628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44629697_44637306_44637478_44638347
ES_00059141	chr9	-	4055	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	13	4	13	-4	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTGCTTATCCCTCAA	NA	False	NA	NA	False	NA	NA	NA	44679129	44652864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ES_00059146	chr9	-	2452	9	FSM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	0	-4	0	-3	multi-exon	FALSE	canonical	2	3	junction_8	3.68908864084343	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGTTTGTTCATTTCTT	8172	False	NA	NA	False	AGTAAA	-19	NA	44710604	44705068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710055_44710477
ES_00059149	chr9	-	544	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	4613	junction_2	56	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGAGTTGTCTTTGGCTTT	NA	False	NA	24	True	NA	NA	NA	44832040	44824514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44824765_44825948_44826110_44831907
ES_00059151	chr9	-	3387	20	FSM	ENSMUSG00000059890.17	ENSMUST00000117549.8	3415	20	28	0	6	0	multi-exon	FALSE	canonical	2	4	junction_19	14.0720347023741	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGAACTGCACATGCA	5328	False	NA	NA	False	AATAAA	-1	NA	44876870	44837145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44876782
ES_00059152	chr9	-	903	7	FSM	ENSMUSG00000002033.15	ENSMUST00000002101.12	1023	7	13	107	13	73	multi-exon	FALSE	canonical	2	5	junction_5	2.73353657780945	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCCCAAAAAAATTCAGTGA	NA	False	NA	NA	False	NA	NA	NA	44891716	44880976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44881216_44881988_44882072_44882560_44882605_44884803_44884936_44885460_44885689_44886544_44886569_44891563
ES_00059154	chr9	-	3717	1	FSM	ENSMUSG00000110899.2	ENSMUST00000214803.2	3921	1	-177	381	-177	-381	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCCTAATAGAAATTTGG	7533	False	NA	NA	False	NA	NA	NA	44966819	44963102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44963100_44966800
ES_00059155	chr9	-	5950	32	NIC	ENSMUSG00000043987.19	novel	6105	32	NA	NA	-13	4	combination_of_known_junctions	FALSE	canonical	3	20	junction_21	18.7691490839651	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGTGAGTGTGCTGGTC	NA	False	NA	41	True	ATTAAA	-29	NA	45739950	45678239	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45693249_45693547_45696180_45696328_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ES_00059156	chr9	-	5506	30	FSM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	39	-4	-13	4	multi-exon	FALSE	canonical	3	5	junction_18	19.7537756592073	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGTGAGTGTGCTGGTC	NA	False	NA	41	True	ATTAAA	-29	NA	45739950	45678239	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ES_00059158	chr9	-	770	6	FSM	ENSMUSG00000043987.19	ENSMUST00000217554.2	770	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	15.4609184720701	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAGAAGGAGGCGGAGAA	NA	False	NA	NA	False	NA	NA	NA	45705564	45690751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45690909_45690987_45691135_45698723_45698810_45702380_45702465_45704229_45704311_45705349
ES_00059160	chr9	-	1590	1	FSM	ENSMUSG00000089810.2	ENSMUST00000162209.2	1589	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGGCATATACTTGGA	9967	False	NA	0	True	AATAAA	-16	NA	45769655	45768065	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45768100_45769700
ES_00059161	chr9	-	2079	1	FSM	ENSMUSG00000111128.2	ENSMUST00000216609.2	2079	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCATCTCAATGCCAAGTC	7642	False	NA	NA	False	NA	NA	NA	45771980	45769901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45769900_45772000
ES_00059162	chr9	-	3294	15	FSM	ENSMUSG00000042790.17	ENSMUST00000161203.8	3294	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	20.976176963403	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGCCTGAGTCTTCCTT	9128	False	NA	NA	False	NA	NA	NA	45818167	45774722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103_45816218_45818035
ES_00059163	chr9	-	3964	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_13	9.64395754655542	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGCCTTATTGTC	9120	False	NA	17	True	NA	NA	NA	45818175	45774806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
ES_00059164	chr9	-	3431	15	NIC	ENSMUSG00000042790.17	novel	3964	14	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	14.9340386434508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAATGCATCTGGGGG	9576	False	NA	NA	False	ATTAAA	-14	NA	45817719	45774988	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
ES_00059165	chr9	-	2817	14	FSM	ENSMUSG00000042790.17	ENSMUST00000162699.8	2808	14	0	-9	0	0	multi-exon	FALSE	canonical	1	1	junction_13	19.2178418087719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTCCATTTCTCCCACCA	9136	False	NA	NA	False	AGTAAA	-27	NA	45818159	45775587	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816067_45816218_45818035
ES_00059166	chr9	-	4030	27	FSM	ENSMUSG00000034908.17	ENSMUST00000114573.9	4012	27	0	-18	0	0	multi-exon	FALSE	canonical	3	14	junction_15	37.8730361062501	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGGGAGGTGCAGGAG	NA	False	NA	-14	True	AATAAA	-34	NA	45866275	45849154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45857803_45857867_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ES_00059167	chr9	-	4262	26	FSM	ENSMUSG00000034908.17	ENSMUST00000038488.17	4248	26	0	-14	0	14	multi-exon	FALSE	canonical	3	112	junction_16	17.0789226826519	3138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGCCTCCGTGTCCCAT	NA	False	NA	0	True	NA	NA	NA	45866556	45849140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ES_00059171	chr9	-	794	6	FSM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	143.058869001541	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGTGTTACAGCATC	9711	False	NA	NA	False	NA	NA	NA	45896692	45879981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896599
ES_00059172	chr9	-	714	6	FSM	ENSMUSG00000003131.8	ENSMUST00000215060.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	147.373539008874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGGGCTATGCAAAGA	4139	False	NA	NA	False	NA	NA	NA	45896122	45880082	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890022_45896002
ES_00059173	chr9	-	1077	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391911	48379811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ES_00059174	chr9	-	1785	4	FSM	ENSMUSG00000032026.8	ENSMUST00000213508.2	1780	4	0	-5	0	0	multi-exon	FALSE	canonical	3	46	junction_1	526.615820330364	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTCAGTTAAAGTTTTTA	NA	False	NA	-10	True	AATAAA	-15	NA	48391915	48384785	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_48386200_48386419_48386498_48390609_48390694_48391706
ES_00059177	chr9	-	1944	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	-65	-12	-60	4	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTCTTTATTTTGACG	NA	False	NA	0	True	ATTAAA	-16	NA	48406659	48399996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
ES_00059180	chr9	-	3238	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	21	369	11	-369	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACCCCATCCCCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	49397504	49348631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
ES_00059184	chr9	-	6183	18	NNC	ENSMUSG00000039542.17	novel	3088	18	NA	NA	-125	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	48.1650852021041	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAGTCCAACTGGGCTTT	8392	False	NA	1	True	AATAAA	-24	NA	49710350	49413433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431516_49434821_49434949_49454309_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481201_49709977
ES_00059188	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7959	False	NA	NA	False	AATAAA	-18	NA	50439951	50432916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
ES_00059191	chr9	-	895	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATATTTCCATTTGATT	6977	False	NA	NA	False	AATAAA	-21	NA	50472610	50468224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
ES_00059192	chr9	-	1242	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	0	-11	0	11	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATACATTGTACTTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	50515112	50507645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
ES_00059194	chr9	-	2805	5	FSM	ENSMUSG00000059820.15	ENSMUST00000145139.8	2805	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	31.5386667441729	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAAAGAGAAGAGTG	103	False	NA	NA	False	AAGAAA	-9	NA	50528567	50518858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957
ES_00059199	chr9	-	1099	8	FSM	ENSMUSG00000032064.18	ENSMUST00000124424.2	1099	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	5.03862631101383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATCCCTGGATGGGAAG	8114	False	NA	NA	False	TTTAAA	-22	NA	50595694	50577558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50577576_50578959_50579069_50580749_50580856_50592786_50592854_50593332_50593927_50595024_50595097_50595173_50595267_50595653
ES_00059200	chr9	-	2013	18	NNC	ENSMUSG00000032064.18	novel	364	4	NA	NA	0	-2501	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	11.7561733764328	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGCAACTCTAGTCTCA	NA	False	NA	NA	False	AATAAA	-7	NA	50639238	50590504	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_50590663_50592786_50592854_50593332_50593501_50593836_50593927_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
ES_00059201	chr9	-	2230	15	NIC	ENSMUSG00000032064.18	novel	5719	20	NA	NA	43	-4883	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	11.3064908213768	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTAACTCTTGATATCAC	NA	False	NA	NA	False	AGTAAA	-16	NA	50639324	50592886	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_50593501_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
ES_00059203	chr9	-	1286	4	FSM	ENSMUSG00000032062.4	ENSMUST00000034564.4	1257	4	-28	-1	-28	1	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGATTGATTGTTCCTGG	2088	False	NA	NA	False	AATAAA	-18	NA	50657864	50650989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ES_00059207	chr9	-	790	3	NIC	ENSMUSG00000037971.11	novel	2082	4	NA	NA	-10	-2	combination_of_known_splicesites	TRUE	canonical	2	3	junction_1	11	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACCAAAAAAAAATCTCTA	NA	False	NA	NA	False	AATAAA	-8	NA	50679431	50675031	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_50675317_50675995_50676227_50679157
ES_00059208	chr9	-	7325	16	NNC	ENSMUSG00000037112.17	novel	4107	16	NA	NA	0	3156	intron_retention	FALSE	canonical	3	11	junction_8	13.1969693490589	325	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGGTGATATGAATATC	NA	False	NA	-1	True	AATAAA	-19	NA	50920373	50800944	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818797_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ES_00059210	chr9	-	4182	16	FSM	ENSMUSG00000037112.17	ENSMUST00000176663.8	4107	16	-75	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	10.4796098315835	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGGTACTCTTTTAT	NA	False	NA	NA	False	AAAAAG	-6	NA	50920311	50804100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ES_00059211	chr9	-	3576	17	FSM	ENSMUSG00000037112.17	ENSMUST00000176491.8	3576	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	14.4784322355703	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGGTACTCTTTTAT	NA	False	NA	NA	False	AAAAAG	-6	NA	50920273	50804100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50804690_50805257_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ES_00059215	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1037	False	NA	-5	True	AATAAA	-17	NA	51874846	51854605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ES_00059216	chr9	-	1097	1	FSM	ENSMUSG00000098076.2	ENSMUST00000182467.2	1008	1	120	-209	120	209	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCATAACTGTATGTAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	51914461	51913364	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_51913400_51914500
ES_00059220	chr9	-	1533	7	FSM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-91	-199	-24	199	multi-exon	FALSE	canonical	3	42	junction_1	25.1837690233655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAATGTCTTGTGCTCC	NA	False	NA	NA	False	AATAAA	-15	NA	53448064	53432947	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ES_00059221	chr9	-	712	5	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	0	5251	0	96	5prime_fragment	FALSE	canonical	3	85	junction_4	8.07774721070176	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGACTCAGAGTTTAAT	NA	False	NA	-3	True	AATAAA	-17	NA	53447973	53438397	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ES_00059225	chr9	-	3585	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGTGTGGGTATACG	NA	False	NA	57	True	AATGAA	-14	NA	53578811	53528323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
ES_00059226	chr9	-	530	3	FSM	ENSMUSG00000032030.17	ENSMUST00000146405.2	559	3	0	29	0	-29	multi-exon	FALSE	canonical	3	347	junction_2	63.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTCAGAATTCAGTGCA	NA	False	NA	NA	False	NA	NA	NA	53558208	53553980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_53554127_53555786_53555929_53557966
ES_00059229	chr9	-	849	1	FSM	ENSMUSG00000082465.2	ENSMUST00000118010.2	750	1	-26	-73	-26	73	mono-exon	FALSE	NA	NA	NA	NA	NA	714	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAAAAAAAATTACA	8739	False	NA	NA	False	NA	NA	NA	53601609	53600760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_53600800_53601600
ES_00059231	chr9	-	671	3	Intergenic	novelGene_4139	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	11.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAAACCCTAAGC	NA	False	NA	NA	False	NA	NA	NA	53788479	53775963	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_53776427_53777088_53777180_53788362
ES_00059232	chr9	-	10614	44	FSM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_28	15.8606697115632	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTAAACTGTTTATTCG	6932	False	NA	0	True	AATAAA	-27	NA	54408910	54272441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911_54301161_54303523_54303655_54305330_54305408_54307225_54307418_54308200_54309271_54311240_54311506_54313031_54313198_54313880_54313979_54316434_54316605_54318883_54318995_54322713_54324388_54327028_54327257_54330513_54330634_54333665_54333790_54335317_54335408_54352666_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ES_00059233	chr9	-	2964	16	FSM	ENSMUSG00000041268.18	ENSMUST00000144736.8	2958	16	0	-6	0	6	multi-exon	FALSE	canonical	3	8	junction_1	17.8940089291236	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTAGATTGGTTGATTC	6987	False	NA	NA	False	AATAAA	-18	NA	54408855	54330450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54330634_54333665_54333790_54335317_54335408_54352666_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ES_00059234	chr9	-	2871	13	ISM	ENSMUSG00000041268.18	ENSMUST00000144736.8	2958	16	-251	22157	-196	1	5prime_fragment	FALSE	canonical	3	29	junction_1	10.0950345329881	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTGGTTGGTAGTTGG	6736	False	NA	NA	False	AATAAA	-19	NA	54409106	54352613	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ES_00059235	chr9	-	1392	6	FSM	ENSMUSG00000037493.7	ENSMUST00000041901.7	1433	6	9	32	9	-32	multi-exon	FALSE	canonical	1	2	junction_1	2.4	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTAGAAATAAAACACTTT	6925	False	NA	NA	False	NA	NA	NA	54467493	54452109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54452769_54453172_54453369_54455616_54455765_54457064_54457177_54461770_54461806_54467251
ES_00059236	chr9	-	1077	1	FSM	ENSMUSG00000110867.2	ENSMUST00000213307.2	367	1	17	-727	17	727	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTTCTCCATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	54598769	54597692	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54597700_54598800
ES_00059237	chr9	-	1159	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	0	3	0	2	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCATTTGTGAACGT	5443	False	NA	-6	True	AATAAA	-16	NA	54641781	54624445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
ES_00059238	chr9	-	1184	11	FSM	ENSMUSG00000061559.16	ENSMUST00000051822.13	1187	11	0	3	0	2	multi-exon	FALSE	canonical	3	455	junction_10	209.060852385137	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCATTTGTGAACGT	5423	False	NA	-6	True	AATAAA	-16	NA	54641801	54624445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
ES_00059239	chr9	-	1290	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5421	False	NA	-8	True	AATAAA	-14	NA	54641803	54624447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
ES_00059241	chr9	-	818	1	FSM	ENSMUSG00000111686.2	ENSMUST00000213253.2	622	1	-59	-137	-59	137	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAACACACACACATACAC	1870	False	NA	NA	False	AAGAAA	-17	NA	54732625	54731807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54731800_54732600
ES_00059242	chr9	-	574	1	FSM	ENSMUSG00000044820.7	ENSMUST00000054018.7	769	1	97	98	97	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATGGTCTACAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	54858185	54857611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54857600_54858200
ES_00059249	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068341	56043167	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ES_00059250	chr9	-	10970	7	FSM	ENSMUSG00000074305.10	ENSMUST00000061552.15	6996	7	25	-3999	0	-4	multi-exon	FALSE	canonical	3	31	junction_4	5.42883249163411	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAGACTTGAAGTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	56325326	56108413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_56114896_56134385_56135129_56148443_56148629_56164810_56168047_56225946_56226105_56281659_56281724_56325224
ES_00059253	chr9	-	1169	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	-159	231	0	-231	multi-exon	FALSE	canonical	1	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATAGCTTTCTTAATCA	NA	False	NA	NA	False	NA	NA	NA	56979250	56964144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_56964423_56964552_56965086_56978892
ES_00059254	chr9	-	957	2	FSM	ENSMUSG00000074284.7	ENSMUST00000135527.2	957	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATCCTTTATTCAG	NA	False	NA	NA	False	AATAAA	-40	NA	56979250	56964486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_56965086_56978892
ES_00059256	chr9	-	439	1	FSM	ENSMUSG00000032299.11	ENSMUST00000213161.2	437	1	0	-2	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	9135	False	NA	0	True	AATAAA	-19	NA	57062757	57062318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57062300_57062800
ES_00059257	chr9	-	585	4	FSM	ENSMUSG00000032299.11	ENSMUST00000214174.2	579	4	0	-6	0	0	multi-exon	FALSE	canonical	3	92	junction_3	505.386980441721	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	8385	False	NA	0	True	AATAAA	-19	NA	57063507	57062318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57062565_57062695_57062873_57063185_57063296_57063455
ES_00059258	chr9	-	1941	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6331	False	NA	0	True	AATAAA	-19	NA	57065561	57062318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
ES_00059259	chr9	-	862	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	-4	0	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6277	False	NA	0	True	AATAAA	-19	NA	57065615	57062318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ES_00059260	chr9	-	388	5	FSM	ENSMUSG00000032299.11	ENSMUST00000217018.2	388	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	441.916281664299	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATGTCCCTCTCGGCAG	7474	False	NA	NA	False	NA	NA	NA	57064418	57062739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57062873_57063185_57063267_57063799_57063840_57064058_57064125_57064350
ES_00059263	chr9	-	4159	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	13	-20	0	20	multi-exon	FALSE	canonical	3	41	junction_1	39.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGGTCATAGATGAGT	NA	False	NA	13	True	ATTAAA	-41	NA	57169882	57160379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57161613_57163668_57166424_57169711
ES_00059266	chr9	-	1960	8	NNC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	55.5028956773557	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347345	57321243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57346396_57346643_57347258
ES_00059267	chr9	-	1665	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347390	57321243	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ES_00059268	chr9	-	1205	5	NIC	ENSMUSG00000063849.7	novel	2744	7	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	2	12	junction_2	55.6169938058504	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGACTGTGTCCTTCTT	NA	False	NA	-6	True	AATAAA	-15	NA	57347375	57321245	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57322010_57322368_57322538_57342185_57342369_57344699_57344766_57347352
ES_00059269	chr9	-	3159	6	NIC	ENSMUSG00000040722.8	novel	3225	7	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_5	39.9669863762581	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375315	57348609	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375098
ES_00059270	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375341	57348609	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
ES_00059271	chr9	-	1025	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGGGGGCCAGTGGGAC	NA	False	NA	NA	False	NA	NA	NA	57375343	57350928	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
ES_00059273	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ES_00059275	chr9	-	2765	13	FSM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	12	-28	12	28	multi-exon	FALSE	canonical	3	100	junction_12	11.433381924095	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGTCTGCCCAGTCGT	NA	False	NA	3	True	NA	NA	NA	57552924	57533900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57552277
ES_00059276	chr9	-	2162	13	FSM	ENSMUSG00000032312.8	ENSMUST00000217314.2	2162	13	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_12	31.3823862487649	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGCCTCGGCGCTTCCT	NA	False	NA	-26	True	AATAAA	-22	NA	57541350	57533929	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277
ES_00059277	chr9	-	389	3	FSM	ENSMUSG00000032312.8	ENSMUST00000213943.2	393	3	4	0	4	0	multi-exon	FALSE	canonical	3	7	junction_2	1	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCCCAGAACCTGGATC	NA	False	NA	NA	False	NA	NA	NA	57560750	57559213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57559276_57559849_57559986_57560559
ES_00059278	chr9	-	2678	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	-194	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCTTGTGGAAAGCCAAG	8874	False	NA	-11	True	AATAAA	-16	NA	57673337	57657906	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
ES_00059279	chr9	-	2365	12	FSM	ENSMUSG00000032316.9	ENSMUST00000215233.2	2363	12	0	-2	0	0	multi-exon	FALSE	canonical	3	232	junction_9	49.1934955049954	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9814	False	NA	-9	True	AATAAA	-21	NA	57672397	57657991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ES_00059280	chr9	-	4133	11	FSM	ENSMUSG00000032316.9	ENSMUST00000215109.2	4130	11	0	-3	0	0	multi-exon	FALSE	canonical	3	243	junction_10	41.0098768591177	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9807	False	NA	-9	True	AATAAA	-21	NA	57672404	57657991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57668324_57668998_57669151_57672356
ES_00059281	chr9	-	2496	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9068	False	NA	-9	True	AATAAA	-21	NA	57673143	57657991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ES_00059282	chr9	-	4177	9	FSM	ENSMUSG00000004661.16	ENSMUST00000171444.8	4171	9	0	-6	0	3	multi-exon	FALSE	canonical	2	19	junction_8	71.7791752529938	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGGGATCCTTTCACTG	NA	False	NA	0	True	AATAAA	-23	NA	57743991	57697632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743758
ES_00059283	chr9	-	4033	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	0	3	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGGGATCCTTTCACTG	NA	False	NA	0	True	AATAAA	-23	NA	57744053	57697632	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
ES_00059284	chr9	-	1993	8	FSM	ENSMUSG00000004661.16	ENSMUST00000098686.4	1969	8	0	-24	0	23	multi-exon	FALSE	canonical	3	208	junction_2	15.8603600340019	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTTTTTTTTTCC	NA	False	NA	NA	False	ATTAAA	-39	NA	57744076	57701945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
ES_00059285	chr9	-	2158	2	FSM	ENSMUSG00000037206.16	ENSMUST00000041477.15	2223	2	66	-1	66	1	multi-exon	FALSE	canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTGATGCTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	58066438	58063549	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58065514_58066244
ES_00059286	chr9	-	3967	2	FSM	ENSMUSG00000051243.15	ENSMUST00000163200.3	4123	2	156	0	9	0	multi-exon	FALSE	canonical	3	11	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGAGATTTTTGGGGT	9983	False	NA	1	True	AATAAA	-20	NA	58108842	58103579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58107267_58108562
ES_00059288	chr9	-	4481	9	FSM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_4	53.0057485090061	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGATTGCAATCTCTA	2151	False	NA	-1	True	AGTAAA	-23	NA	58157069	58125358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00059289	chr9	-	4343	8	FSM	ENSMUSG00000036986.17	ENSMUST00000114136.9	4343	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	73.8752395624418	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGATTGCAATCTCTA	2151	False	NA	-1	True	AGTAAA	-23	NA	58157069	58125358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00059290	chr9	-	5326	9	FSM	ENSMUSG00000036986.17	ENSMUST00000135310.8	4413	9	0	-913	0	903	multi-exon	FALSE	canonical	3	33	junction_1	114.3314807916	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACACACTGTGTTCGGG	2204	False	NA	NA	False	AATAAA	-19	NA	58157016	58124455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00059291	chr9	-	4396	11	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	0	903	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	112.525063874676	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACACACTGTGTTCGGG	2204	False	NA	NA	False	AATAAA	-19	NA	58157016	58124455	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00059292	chr9	-	2573	4	FSM	ENSMUSG00000036986.17	ENSMUST00000148628.8	2573	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	135.155054988294	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTCTGTAATTTTG	NA	False	NA	-13	True	NA	NA	NA	58140668	58125824	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58127853_58136637_58136691_58137110_58137370_58140435
ES_00059293	chr9	-	6649	8	FSM	ENSMUSG00000036986.17	ENSMUST00000153820.8	2652	8	-120	-3877	-120	903	multi-exon	FALSE	canonical	3	249	junction_3	51.5692520316326	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACACACTGTGTTCGGG	2031	False	NA	NA	False	AATAAA	-19	NA	58157189	58124455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00059295	chr9	-	3185	7	FSM	ENSMUSG00000032334.11	ENSMUST00000061799.10	3297	7	0	112	0	-112	multi-exon	FALSE	canonical	2	7	junction_6	4.22952584681651	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGGAGAGAGACTTGGCT	9357	False	NA	NA	False	NA	NA	NA	58220469	58195132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58196201_58198037_58198154_58199851_58199948_58200855_58201013_58201641_58201780_58204903_58205013_58218968
ES_00059297	chr9	-	883	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGGTGAATCCACT	9050	False	NA	17	True	AATAAA	-40	NA	58648842	58560138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ES_00059298	chr9	-	7288	28	FSM	ENSMUSG00000032340.9	ENSMUST00000214547.2	5414	28	0	-1874	0	6	multi-exon	FALSE	canonical	3	72	junction_21	17.5900582969936	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATGTGTCTTCTTCCTGT	NA	False	NA	1	True	AATAAA	-25	NA	58943708	58781963	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
ES_00059299	chr9	-	7230	28	NIC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	63	junction_21	18.8438096795025	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATGTGTCTTCTTCCTGT	NA	False	NA	1	True	AATAAA	-25	NA	58943710	58781963	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838399_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
ES_00059300	chr9	-	4281	25	NNC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	2932	-36	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_24	33.2944564955389	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCACTGTGAGATTACA	NA	False	NA	-52	True	NA	NA	NA	58886459	58783873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838399_58863241_58863363_58865180_58865336_58885907_58886045_58886288
ES_00059301	chr9	-	394	1	FSM	ENSMUSG00000066592.4	ENSMUST00000085631.4	534	1	92	48	92	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGCTGGTTCCAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	59053401	59053007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59053000_59053400
ES_00059302	chr9	-	2481	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	51	-14	-8	14	multi-exon	FALSE	canonical	3	108	junction_2	13.5581054068119	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTTACCTATTTCCGAG	NA	False	NA	-4	True	AATAAA	-16	NA	59260740	59229258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
ES_00059304	chr9	-	6971	14	FSM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	0	0	0	0	multi-exon	TRUE	canonical	3	295	junction_6	43.7741649239926	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATTGTTAAACTGTGAC	NA	False	NA	NA	False	AATAAA	-17	NA	59393897	59295540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59361684_59361753_59393261
ES_00059306	chr9	-	568	1	FSM	ENSMUSG00000090516.2	ENSMUST00000171632.2	475	1	-24	-69	-24	69	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAGGATGACACTAAGCT	NA	False	NA	NA	False	AATAAA	-37	NA	59379540	59378972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59379000_59379500
ES_00059309	chr9	-	3762	3	FSM	ENSMUSG00000051705.14	ENSMUST00000163586.9	3570	3	0	-192	0	-2	multi-exon	FALSE	canonical	3	14	junction_2	2.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGTCTCTGTCTCCT	6429	False	NA	-6	True	AATAAA	-16	NA	59657921	59641543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59645152_59647222_59647316_59657860
ES_00059311	chr9	-	8513	17	FSM	ENSMUSG00000032289.16	ENSMUST00000171654.8	8522	17	0	9	0	-9	multi-exon	FALSE	canonical	0	0	junction_11	5.3253521010352	1995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCTTAGTTAGCTGTCT	NA	False	NA	NA	False	AATAAA	-12	NA	60404409	59874222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59879822_59883470_59883616_59887051_59887232_59890006_59890181_59894541_59894716_59895207_59895413_59896246_59896377_59904288_59904565_59907223_59907321_59910133_59910310_59964133_59964339_60159932_60160070_60283235_60283339_60301381_60301830_60335446_60335809_60389705_60389779_60404380
ES_00059312	chr9	-	662	4	FSM	ENSMUSG00000032289.16	ENSMUST00000140824.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2.16024689946929	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGTGGTGCGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	60429329	60335508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_60335809_60389705_60389779_60404380_60404489_60429148
ES_00059313	chr9	-	1923	10	ISM	ENSMUSG00000047766.16	ENSMUST00000114032.8	2586	16	21120	2	-16613	-2	3prime_fragment	FALSE	canonical	3	10	junction_2	5.73488351136175	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAAGTCCAGTT	NA	False	NA	NA	False	AATAAA	-9	NA	60573697	60494523	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571
ES_00059315	chr9	-	486	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	2	1164	junction_2	5542	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821814	61820565	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_61820804_61821169_61821242_61821638
ES_00059316	chr9	-	499	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	17831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_61820804_61821169_61821245_61821638
ES_00059318	chr9	-	3398	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854056	61824561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ES_00059321	chr9	-	2987	13	FSM	ENSMUSG00000032254.11	ENSMUST00000216717.2	2987	13	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	34.4781533083713	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTGTTCTAAGTAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	61844058	61830132	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944
ES_00059323	chr9	-	1829	16	FSM	ENSMUSG00000032254.11	ENSMUST00000214295.2	1829	16	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	74.9241394122526	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATCTCGGGACAGAAAT	NA	False	NA	NA	False	AATAAA	-39	NA	61854042	61832878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ES_00059326	chr9	-	4865	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	0	-15	0	15	multi-exon	FALSE	canonical	3	145	junction_3	11.5974135047432	3355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTCTCTTCTGCTTAGTT	NA	False	NA	NA	False	AATAAA	-36	NA	62029892	61964514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
ES_00059328	chr9	-	1925	3	FSM	ENSMUSG00000032252.15	ENSMUST00000185510.2	1922	3	0	-3	0	3	multi-exon	FALSE	canonical	3	22	junction_1	70	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATATGGTGTCTGTTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	62029891	61987598	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_61989308_61995710_61995802_62029766
ES_00059330	chr9	-	3042	2	FSM	ENSMUSG00000046846.5	ENSMUST00000056949.5	3042	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGGACTCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	62189490	62178010	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_62180846_62189283
ES_00059331	chr9	-	3634	12	FSM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	0	-24	0	24	multi-exon	FALSE	canonical	3	53	junction_11	4.75342416814595	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTATCGTGGCCATGTCAT	9358	False	NA	17	True	AATAAA	-43	NA	62444326	62326749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522_62396724_62443934
ES_00059332	chr9	-	618	4	FSM	ENSMUSG00000041729.16	ENSMUST00000131981.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	2.49443825784929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAATTCACTGACAGAGA	9622	False	NA	NA	False	AATGAA	-43	NA	62335283	62332864	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_62333213_62333422_62333514_62333812_62333926_62335217
ES_00059333	chr9	-	550	2	FSM	ENSMUSG00000041729.16	ENSMUST00000151604.2	816	2	0	266	0	-266	multi-exon	FALSE	canonical	3	65	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGAGACCATACATACAT	8373	False	NA	NA	False	NA	NA	NA	62336532	62335810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_62336336_62336507
ES_00059336	chr9	-	5567	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	0	-3	0	3	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTCTGTAAAATGCTA	NA	False	NA	3	True	AATAAA	-20	NA	62888161	62785646	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ES_00059337	chr9	-	4635	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	-62	3	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTCTGTAAAATGCTA	NA	False	NA	3	True	AATAAA	-20	NA	62888227	62785646	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ES_00059340	chr9	-	2217	21	NIC	ENSMUSG00000058444.9	novel	2310	22	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_19	18.5973116336744	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	False	NA	-1	True	AATAAA	-18	NA	63285159	63071049	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63279018_63279068_63284404
ES_00059341	chr9	-	2310	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	False	NA	-1	True	AATAAA	-18	NA	63285184	63071049	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
ES_00059342	chr9	-	620	2	FSM	ENSMUSG00000032403.9	ENSMUST00000168665.3	595	2	-25	0	-20	0	multi-exon	FALSE	canonical	3	56	junction_1	0	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTTCTAGAGTGTGT	NA	False	NA	-11	True	AATAAA	-15	NA	63306548	63301728	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_63301958_63306157
ES_00059343	chr9	-	963	1	FSM	ENSMUSG00000091866.2	ENSMUST00000163864.2	910	1	1	-54	1	54	mono-exon	FALSE	NA	NA	NA	NA	NA	279	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAACAAACAAACAA	NA	False	NA	NA	False	AATAAA	-3	NA	63351356	63350393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_63350400_63351400
ES_00059346	chr9	-	2971	4	FSM	ENSMUSG00000036867.8	ENSMUST00000041029.6	2971	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	8.65383665716478	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	AATAAA	-15	NA	63929341	63860357	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486
ES_00059347	chr9	-	4667	10	ISM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	15028	0	-2326	0	intron_retention	FALSE	canonical	3	728	junction_4	159.423111232537	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	0	True	ACTAAA	-20	NA	64065358	64044425	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445
ES_00059355	chr9	-	2437	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	0	-1	0	1	multi-exon	FALSE	canonical	3	469	junction_6	51.6454257412987	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTGTGGCACACCTTT	NA	False	NA	-12	True	AATAAA	-39	NA	64160913	64093050	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
ES_00059356	chr9	-	3550	17	FSM	ENSMUSG00000032396.18	ENSMUST00000068367.14	3605	17	-49	104	-49	-104	multi-exon	FALSE	canonical	3	33	junction_16	6.60699203495812	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGGGGTTAAAGGTGTG	5007	False	NA	NA	False	NA	NA	NA	64248619	64214142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_64214631_64214711_64214887_64215561_64215708_64217448_64217628_64217723_64217879_64218727_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760_64246915_64248274
ES_00059357	chr9	-	2402	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	-66	0	66	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGAAGATAAGTCCTTG	NA	False	NA	64	True	NA	NA	NA	64645040	64622514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ES_00059358	chr9	-	726	3	FSM	ENSMUSG00000004771.13	ENSMUST00000167569.8	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	492.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTAGAAATAAGCTATTG	NA	False	NA	98	True	NA	NA	NA	64645024	64623784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_64624271_64632783_64632865_64644865
ES_00059362	chr9	-	3339	6	FSM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	-66	0	-66	0	multi-exon	FALSE	canonical	3	13	junction_5	5.23832034148352	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGGCCCAAGCCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	65487388	65461665	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
ES_00059363	chr9	-	7923	10	FSM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	-143	-3	-143	3	multi-exon	FALSE	canonical	2	5	junction_1	3.80058475033046	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGCTGCTGGTTATTT	NA	False	NA	3	True	AATAAA	-27	NA	65734989	65599669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65602977_65603424_65603504_65604313_65604531_65604775_65604952_65608103_65608471_65609553_65611901_65613372_65613461_65638257_65638484_65701903_65702778_65734747
ES_00059364	chr9	-	6125	12	FSM	ENSMUSG00000032386.16	ENSMUST00000122410.8	3915	12	0	-2210	0	4	multi-exon	TRUE	canonical	3	24	junction_1	56.3782972135042	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAATTACTTTTTCCTAGA	NA	False	NA	NA	False	AATAAA	-19	NA	65792337	65736207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65740731_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ES_00059365	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	False	NA	-8	True	TATAAA	-12	NA	65792338	65740437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ES_00059366	chr9	-	2006	16	NNC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	0	55650	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	102.142253744471	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTCAGAAGAAGCAAACCAT	NA	False	NA	NA	False	NA	NA	NA	66032079	65939764	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_65939791_65995418_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
ES_00059368	chr9	-	2024	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	45	4	-44	-4	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACAGGACTGGGCATGGT	NA	False	NA	-8	True	AATAAA	-16	NA	66032123	65995418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
ES_00059369	chr9	-	1816	15	NIC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	118	-4	combination_of_known_junctions	FALSE	canonical	2	5	junction_14	103.740477802514	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACAGGACTGGGCATGGT	NA	False	NA	-8	True	AATAAA	-16	NA	66033751	65995418	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66033724
ES_00059371	chr9	-	4408	14	FSM	ENSMUSG00000032376.13	ENSMUST00000098613.9	2797	14	0	-1611	0	618	multi-exon	FALSE	canonical	3	10	junction_8	36.8152271043594	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGAGGAGAGGAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	66500318	66422897	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
ES_00059372	chr9	-	5860	15	FSM	ENSMUSG00000050503.10_ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	106	-359	0	359	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCTGCAGCCAGCACGA	NA	False	NA	NA	False	NA	NA	NA	66500318	66421559	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
ES_00059374	chr9	-	4590	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	19	596	19	-596	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCACCCCTTCCTGGTCCT	NA	False	NA	NA	False	NA	NA	NA	66741989	66722871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
ES_00059375	chr9	-	218	2	Intergenic	novelGene_4186	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGTGGGAGAGACTGTCA	NA	False	NA	NA	False	NA	NA	NA	66757618	66740021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_66740048_66757426
ES_00059376	chr9	-	4748	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	0	-15	0	15	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTGTACATTTTAGAATA	7751	False	NA	14	True	AATAAA	-36	NA	66826969	66750930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
ES_00059377	chr9	-	4792	9	NNC	ENSMUSG00000036943.10	novel	4733	8	NA	NA	-66	15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.1779399272855	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTGTACATTTTAGAATA	7685	False	NA	14	True	AATAAA	-36	NA	66827035	66750930	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_66752473_66752494_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
ES_00059378	chr9	-	1999	6	FSM	ENSMUSG00000032370.9	ENSMUST00000034929.7	2031	6	39	-7	-25	2	multi-exon	FALSE	canonical	3	42	junction_2	9.68710483064987	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTTTTCAGTTCCTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	66882727	66862667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999_66882067_66882322
ES_00059379	chr9	-	1963	7	NNC	ENSMUSG00000032370.9	novel	2031	6	NA	NA	-25	2	at_least_one_novel_splicesite	TRUE	non_canonical	3	37	junction_1	12.1609575646365	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTTTTCAGTTCCTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	66882727	66862667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_66862833_66862868_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999_66882067_66882322
ES_00059380	chr9	-	1550	9	NNC	ENSMUSG00000032366.16	novel	1607	8	NA	NA	0	24136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.520934502716	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	66950991	66905735	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_66905770_66929871_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00059381	chr9	-	1619	9	NIC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	209.626416214656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951015	66929871	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_66930724_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00059383	chr9	-	1856	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113707.9	1898	9	42	0	42	0	multi-exon	FALSE	canonical	3	24	junction_7	239.532846129711	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66956646	66929871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ES_00059384	chr9	-	1612	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	-5	0	3	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTCCTGTCGTCTGTAT	NA	False	NA	3	True	AATAAA	-29	NA	66951084	66929868	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00059386	chr9	-	998	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113686.8	998	8	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	241.339544025019	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951123	66935247	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66935450_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00059387	chr9	-	2709	8	NIC	ENSMUSG00000032366.16	novel	887	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	256	junction_1	130.784134343269	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951259	66935247	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00059388	chr9	-	887	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGGCCAGGCACAGACT	NA	False	NA	-90	True	NA	NA	NA	66951015	66935329	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00059390	chr9	-	12134	58	FSM	ENSMUSG00000052698.16	ENSMUST00000040025.14	12132	58	0	-2	0	2	multi-exon	TRUE	canonical	3	34	junction_48	16.474347463434	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAAGGTTTCATGG	NA	False	NA	NA	False	AATAAA	-17	NA	67466985	67124366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829_67237933_67239013_67239143_67241471_67241607_67245491_67245606_67247563_67247678_67249316_67249446_67251347_67251515_67253602_67253898_67255403_67255572_67261727_67261827_67262344_67262554_67263941_67264051_67268603_67268718_67269918_67270100_67273186_67273264_67274411_67274514_67277893_67278050_67283009_67283115_67284088_67284153_67293838_67293967_67295851_67295995_67299733_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895
ES_00059391	chr9	-	8527	59	NNC	ENSMUSG00000052698.16	novel	12132	58	NA	NA	-74341	63	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_58	17.5065895526389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACCCGTTTGCACGCTTT	NA	False	NA	57	True	NA	NA	NA	67541326	67128127	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829_67237933_67239013_67239143_67241471_67241607_67245491_67245606_67247563_67247678_67249316_67249446_67251347_67251515_67253602_67253898_67255403_67255572_67261727_67261827_67262344_67262554_67263941_67264051_67268603_67268718_67269918_67270100_67273186_67273264_67274411_67274514_67277893_67278050_67283009_67283115_67284088_67284153_67293838_67293967_67295851_67295995_67299733_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895_67466986_67541172
ES_00059394	chr9	-	3727	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	0	-24	0	24	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGAAGAATCTTTGAGTGT	NA	False	NA	4	True	AATAAA	-43	NA	70048860	69995768	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
ES_00059397	chr9	-	4952	14	FSM	ENSMUSG00000032217.14	ENSMUST00000213647.2	4961	14	16	-7	-8	1	multi-exon	FALSE	canonical	3	130	junction_13	65.8687955321188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTTTCATAATTAGTGT	2609	False	NA	-12	True	AATAAA	-22	NA	70410644	70332704	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221
ES_00059400	chr9	-	4794	14	NIC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	148	junction_8	58.7438527565769	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTCATAATTAGTG	2247	False	NA	-13	True	AATAAA	-21	NA	70411006	70332705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ES_00059401	chr9	-	4928	15	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-66	1	combination_of_known_junctions	FALSE	canonical	3	128	junction_14	71.3097941007676	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTTTCATAATTAGTGT	2180	False	NA	-12	True	AATAAA	-22	NA	70411073	70332704	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
ES_00059402	chr9	-	4446	15	NNC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_13	86.1012692788473	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTCATAATTAGTG	2246	False	NA	-13	True	AATAAA	-21	NA	70411007	70332705	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383180_70383531_70383951_70410740
ES_00059403	chr9	-	5010	15	FSM	ENSMUSG00000032217.14	ENSMUST00000034739.12	4880	15	-125	-5	-125	0	multi-exon	FALSE	canonical	3	68	junction_2	86.8932021013645	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTCATAATTAGTG	2121	False	NA	-13	True	AATAAA	-21	NA	70411132	70332705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
ES_00059405	chr9	-	4822	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_2	77.5959798873276	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTCATAATTAGTG	2246	False	NA	-13	True	AATAAA	-21	NA	70411007	70332705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ES_00059408	chr9	-	8078	9	FSM	ENSMUSG00000042444.11	ENSMUST00000049031.6	8081	9	3	0	3	0	multi-exon	FALSE	canonical	3	12	junction_5	3.11247489949718	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTCTCTGTGTGTCAAC	NA	False	NA	2	True	AATAAA	-20	NA	70564453	70506295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_70512572_70514739_70514941_70518110_70518285_70524045_70524189_70534036_70534140_70538277_70538437_70541286_70541352_70552170_70552229_70563554
ES_00059410	chr9	-	2200	4	FSM	ENSMUSG00000032199.14	ENSMUST00000034720.12	2200	4	0	0	0	0	multi-exon	FALSE	canonical	3	2231	junction_1	103.721850264167	718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGAGTTTCCGTTCT	2470	False	NA	1	True	NA	NA	NA	71393217	71385718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965
ES_00059412	chr9	-	6262	21	FSM	ENSMUSG00000032228.17	ENSMUST00000183404.8	6299	21	26	11	0	-11	multi-exon	FALSE	canonical	3	53	junction_7	13.3626344707921	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGCACCACAGTGGCTG	9404	False	NA	NA	False	NA	NA	NA	72019103	71749980	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
ES_00059413	chr9	-	4637	20	FSM	ENSMUSG00000032228.17	ENSMUST00000034755.13	4621	20	0	-16	0	0	multi-exon	FALSE	canonical	3	33	junction_6	15.470103416687	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTGTTTTCCACAGAAT	9404	False	NA	-11	True	AGTAAA	-17	NA	72019103	71751533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
ES_00059414	chr9	-	502	2	Genic_Genomic	ENSMUSG00000061390.7	novel	379	1	NA	NA	0	631	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTGGCATGTGTCTTTGG	8156	False	NA	NA	False	NA	NA	NA	72082240	72081230	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_72081269_72081776
ES_00059415	chr9	-	537	2	Genic_Genomic	ENSMUSG00000061390.7	novel	379	1	NA	NA	-36	631	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTGGCATGTGTCTTTGG	8120	False	NA	NA	False	NA	NA	NA	72082276	72081230	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_72081268_72081776
ES_00059417	chr9	-	1106	1	FSM	ENSMUSG00000098893.2	ENSMUST00000183380.2	799	1	-24	-283	-24	283	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTCAGATCTCCACATG	NA	False	NA	NA	False	NA	NA	NA	72200646	72199540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72199500_72200600
ES_00059418	chr9	-	2794	12	FSM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_11	31.4406169897191	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGTTTGCTATTTGTA	7736	False	NA	NA	False	NA	NA	NA	72399383	72367001	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ES_00059422	chr9	-	733	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	-22	0	22	multi-exon	FALSE	canonical	3	81	junction_1	0	4675	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTTTGTTTTTTTT	NA	False	NA	23	True	AAAACA	-23	NA	72892658	72886981	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72887479_72892422
ES_00059424	chr9	-	2193	12	FSM	ENSMUSG00000079469.11	ENSMUST00000098566.5	2193	12	0	0	0	0	multi-exon	FALSE	non_canonical	3	35	junction_5	10.1158577744251	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCCCCCCAGCAGGAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	72946981	72922977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
ES_00059426	chr9	-	691	1	FSM	ENSMUSG00000111027.2	ENSMUST00000213947.2	694	1	-1	4	-1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAGCCCAAGACTGAAG	NA	False	NA	NA	False	NA	NA	NA	74969330	74968639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_74968600_74969300
ES_00059428	chr9	-	4201	6	NIC	ENSMUSG00000042688.17	novel	4072	6	NA	NA	0	139	intron_retention	FALSE	canonical	3	45	junction_5	102.565881266628	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGTTCCCACCGGGTA	NA	False	NA	-3	True	AATAAA	-39	NA	75317267	75294044	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317136
ES_00059429	chr9	-	4089	6	FSM	ENSMUSG00000042688.17	ENSMUST00000168937.8	4089	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	119.229862031288	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCACTGCTCAGTCTTTT	NA	False	NA	-46	True	AATAAA	-18	NA	75316641	75294183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75316483
ES_00059431	chr9	-	894	2	FSM	ENSMUSG00000042688.17	ENSMUST00000173460.2	875	2	-19	0	-19	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGCCGTGGGAACGTGAT	NA	False	NA	NA	False	AAGAAA	-4	NA	75316884	75305540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75306034_75316483
ES_00059433	chr9	-	3666	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	1	0	-1	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGCTGTATGCCACATT	NA	False	NA	70	True	AATAAA	-29	NA	75466939	75404989	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ES_00059434	chr9	-	762	2	FSM	ENSMUSG00000058587.10	ENSMUST00000214424.2	922	2	160	0	160	0	multi-exon	FALSE	canonical	3	14	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTGTGGAAAGTTTCAGA	28	False	NA	NA	False	NA	NA	NA	75410186	75407152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75407433_75409704
ES_00059435	chr9	-	2837	1	FSM	ENSMUSG00000058587.10	ENSMUST00000214733.2	2990	1	16	137	16	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTAGCATAGAGACCAT	8974	False	NA	NA	False	TATAAA	-38	NA	75413449	75410612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75410600_75413400
ES_00059436	chr9	-	9871	10	FSM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_9	3.42467444609388	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGTTCCTGGCTACTC	NA	False	NA	2	True	AATAAA	-19	NA	75518585	75472902	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
ES_00059437	chr9	-	3136	14	FSM	ENSMUSG00000032352.17	ENSMUST00000183873.8	3121	14	0	-15	0	15	multi-exon	TRUE	canonical	3	32	junction_5	6.66972316521396	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGTTACTTTGTGTGTT	NA	False	NA	NA	False	AATAAA	-32	NA	77452152	77338089	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_77339563_77341275_77341413_77342328_77342502_77349458_77349575_77358639_77358724_77359884_77360004_77362439_77362585_77364671_77364747_77365112_77365177_77365352_77365410_77375839_77375930_77379433_77379513_77406515_77406634_77451746
ES_00059438	chr9	-	2149	13	FSM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	6	0	6	0	multi-exon	FALSE	non_canonical	2	34	junction_11	11.6437274482396	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78015932	77988780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
ES_00059439	chr9	-	1853	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	0	-3	0	0	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78016347	77988780	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
ES_00059441	chr9	-	1197	6	FSM	ENSMUSG00000001366.15	ENSMUST00000159099.8	1201	6	0	4	0	-4	multi-exon	FALSE	non_canonical	2	34	junction_4	15.3961034031342	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATCATTTTTCATATTG	NA	False	NA	NA	False	AATAAA	-11	NA	78015886	78002798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
ES_00059443	chr9	-	851	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	17	2	17	-2	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCTCCTCATAAGTTC	NA	False	NA	-1	True	AATAAA	-15	NA	78254423	78238301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
ES_00059444	chr9	-	619	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	7509	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78274577_78275002_78275186_78275266
ES_00059445	chr9	-	2460	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	-100	-222	-100	222	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTTCACAGATAGAACC	NA	False	NA	NA	False	NA	NA	NA	78286107	78283168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78284974_78285256_78285440_78285635
ES_00059446	chr9	-	1728	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	0	96379	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4949.720940392	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGATTATAGAACTCC	8136	False	NA	NA	False	NA	NA	NA	78387970	78289351	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_78289380_78385738_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
ES_00059448	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	9621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	7100	False	NA	NA	False	ATTAAA	-22	NA	78389006	78385730	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
ES_00059449	chr9	-	845	3	FSM	ENSMUSG00000037742.15	ENSMUST00000129380.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	11573	junction_2	1918	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCAGAACTGTTTGTCT	9108	False	NA	NA	False	NA	NA	NA	78386998	78385965	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78386141_78386239_78386817_78386905
ES_00059451	chr9	-	858	3	FSM	ENSMUSG00000037742.15	ENSMUST00000126614.2	842	3	0	-16	0	0	multi-exon	FALSE	canonical	3	12130	junction_2	206	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGGATGTCTATAAAAT	8136	False	NA	NA	False	NA	NA	NA	78387970	78386930	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78387431_78387522_78387703_78387792
ES_00059454	chr9	-	1201	1	FSM	ENSMUSG00000059422.6	ENSMUST00000182917.2	1201	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTTAAGTGCTATTACC	NA	False	NA	NA	False	NA	NA	NA	78729120	78727919	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78727900_78729100
ES_00059455	chr9	-	596	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	77	-14	77	14	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	6036	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGCAAATCTTAGATAAGA	NA	False	NA	14	True	AATAAA	-30	NA	79667083	79662628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
ES_00059457	chr9	-	10756	40	FSM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_28	10.5485322148115	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTCTACTTAGAACAG	NA	False	NA	NA	False	AATAAA	-17	NA	82857569	82748211	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_82753915_82757342_82757541_82758061_82758322_82758778_82758943_82759242_82759396_82762164_82762315_82763373_82763425_82763722_82763793_82766885_82767012_82768674_82768796_82769566_82769723_82772166_82772229_82772413_82772526_82775375_82775459_82775577_82775703_82776286_82776395_82778074_82778195_82782674_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
ES_00059459	chr9	-	1397	5	FSM	ENSMUSG00000066456.15	ENSMUST00000185315.7	1391	5	0	-6	0	6	multi-exon	FALSE	canonical	3	40	junction_3	4.7169905660283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTGTTTGTGTCTTTA	NA	False	NA	0	True	AATAAA	-24	NA	83028583	82991994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ES_00059461	chr9	-	919	6	FSM	ENSMUSG00000066456.15	ENSMUST00000162246.9	983	6	68	-4	-12	4	multi-exon	FALSE	canonical	3	19	junction_1	12.1556571192182	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCACCTGTTTGTGTCTT	NA	False	NA	-2	True	AATAAA	-22	NA	83028670	82991996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_82992483_82993045_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ES_00059462	chr9	-	4292	8	FSM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	-123	-9	-23	9	multi-exon	FALSE	canonical	3	4	junction_7	8.75051018920774	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTGAATGACACTTTA	NA	False	NA	4	True	AATAAA	-23	NA	83323203	83275462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83322961
ES_00059463	chr9	-	4092	8	NIC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_7	6.67618368317024	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGGATCCTTTATTTGA	NA	False	NA	-7	True	AATAAA	-12	NA	83323146	83275473	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83323093
ES_00059465	chr9	-	3001	6	FSM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	3.49857113690718	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCCGTCGTTGATTTG	NA	False	NA	1	True	AATAAA	-26	NA	83688305	83660744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_83662863_83665188_83665317_83667087_83667260_83670321_83670403_83672029_83672218_83687991
ES_00059467	chr9	-	5631	29	NNC	ENSMUSG00000035941.16	novel	5650	29	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_19	38.9746614442496	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAGCGTGTGTTTGATTT	NA	False	NA	-3	True	AATAAA	-20	NA	85631367	85569408	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604503_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
ES_00059468	chr9	-	798	1	FSM	ENSMUSG00000099980.2	ENSMUST00000071172.7	760	1	-52	14	-52	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	623	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCACTAAATTGGGTTAAA	NA	False	NA	NA	False	AAAAAG	-17	NA	85664732	85663934	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_85663900_85664700
ES_00059470	chr9	-	1786	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	0	4	0	-4	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGTGTTCTTTTGTTCT	NA	False	NA	-4	True	ATTAAA	-22	NA	86347003	86189362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
ES_00059471	chr9	-	349	1	FSM	ENSMUSG00000103731.2	ENSMUST00000194336.2	472	1	95	28	95	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	3274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAATAAACTCACTCATT	NA	False	NA	NA	False	NA	NA	NA	86429111	86428762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_86428800_86429100
ES_00059472	chr9	-	2666	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGTGTGTTTTAAGT	NA	False	NA	NA	False	AAAAAG	-12	NA	86453880	86436429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ES_00059473	chr9	-	2150	12	FSM	ENSMUSG00000056131.14	ENSMUST00000186193.7	2116	12	-34	0	0	0	multi-exon	FALSE	canonical	3	372	junction_6	45.4649079097238	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGGCAATGACTATGTG	NA	False	NA	NA	False	GATAAA	-12	NA	86453880	86437733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ES_00059474	chr9	-	1904	11	FSM	ENSMUSG00000056131.14	ENSMUST00000187251.2	2460	11	0	556	0	-556	multi-exon	FALSE	canonical	3	372	junction_5	41.8005980818457	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGTAGGCCTCAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	86453895	86439131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ES_00059476	chr9	-	2165	7	NIC	ENSMUSG00000033419.17	novel	4150	26	NA	NA	-74	4	combination_of_known_splicesites	FALSE	canonical	2	6	junction_6	7.81913607049327	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAACGTAATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	86680826	86647981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_86649390_86655571_86655677_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86680590
ES_00059478	chr9	-	7637	27	FSM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	0	48	0	-48	multi-exon	FALSE	canonical	3	45	junction_14	9.30228705097291	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATGTACAGCATTTCAAA	NA	False	NA	NA	False	NA	NA	NA	87137589	87071677	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
ES_00059479	chr9	-	822	1	FSM	ENSMUSG00000100337.2	ENSMUST00000188479.2	822	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATGATGGACATTTGAC	NA	False	NA	NA	False	NA	NA	NA	88163243	88162421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88162400_88163200
ES_00059480	chr9	-	3133	29	NNC	ENSMUSG00000032422.19	novel	3112	28	NA	NA	0	17550	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	45.9745382061126	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAAGAGAGGGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	88321004	88241249	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_88241278_88258806_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ES_00059481	chr9	-	3109	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_13	28.9754164757839	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATTTACTGTCT	NA	False	NA	-2	True	AATAAA	-40	NA	88321004	88258802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ES_00059482	chr9	-	3099	29	FSM	ENSMUSG00000032422.19	ENSMUST00000174806.9	3082	29	0	-17	0	0	multi-exon	FALSE	canonical	3	13	junction_14	53.7773542165344	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATTTACTGTCT	NA	False	NA	-2	True	AATAAA	-40	NA	88320967	88258802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ES_00059483	chr9	-	2228	1	FSM	ENSMUSG00000101335.2	ENSMUST00000188747.2	2153	1	-73	-2	-73	2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATACTACTGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	88325778	88323550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88323600_88325800
ES_00059484	chr9	-	9536	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	4	-90	0	90	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGATGAGACAGGAGGAT	NA	False	NA	NA	False	NA	NA	NA	88364608	88328971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ES_00059485	chr9	-	6257	11	FSM	ENSMUSG00000032423.13	ENSMUST00000174391.8	6257	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	258.93213396564	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGGAGTCCAAGAATT	NA	False	NA	-16	True	AATAAA	-28	NA	88364301	88331783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
ES_00059486	chr9	-	8097	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174282.8	3404	12	0	-4693	0	-987	multi-exon	FALSE	canonical	3	172	junction_1	221.053263840518	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTGCCATTCTGGTAAA	NA	False	NA	NA	False	AAAAAG	-31	NA	88364249	88330048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ES_00059487	chr9	-	2944	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTACAATTCGTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	88364608	88337630	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ES_00059489	chr9	-	1536	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239278.2	1534	3	0	-2	0	0	multi-exon	FALSE	canonical	3	834	junction_1	178	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404941	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88404435_88404536
ES_00059490	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404970	88403104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ES_00059491	chr9	-	1408	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88405016	88403104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
ES_00059492	chr9	-	824	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	0	2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	292.278634183205	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88405027	88403104	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ES_00059493	chr9	-	667	5	NIC	ENSMUSG00000097195.11	novel	826	6	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404935	88403102	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ES_00059494	chr9	-	937	5	NNC	ENSMUSG00000097195.11	novel	1678	5	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_2	465.062562995561	244	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404941	88403102	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_88403502_88403702_88403731_88403998_88404029_88404359_88404435_88404536
ES_00059495	chr9	-	922	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239377.2	913	4	0	-9	0	0	multi-exon	FALSE	canonical	2	6	junction_3	338.103534438787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	-14	True	AATAAA	-33	NA	88404941	88403109	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404536
ES_00059496	chr9	-	591	3	FSM	ENSMUSG00000097073.8	ENSMUST00000180982.2	2263	3	4	1668	4	-1668	multi-exon	FALSE	canonical	3	28	junction_2	8	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGTGCTCTGTTTTG	1031	False	NA	NA	False	NA	NA	NA	88481565	88480521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88481009_88481097_88481153_88481516
ES_00059497	chr9	-	801	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_2	104	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCAATAGAAATTATT	NA	False	NA	NA	False	AATAAA	-20	NA	88601866	88570654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88571039_88597540_88597803_88601711
ES_00059498	chr9	-	1103	2	FSM	ENSMUSG00000079427.11	ENSMUST00000185519.7	1103	2	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	1193	False	NA	NA	False	AATAAA	-16	NA	88598263	88570658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88571039_88597540
ES_00059499	chr9	-	739	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601638	88570658	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_88571039_88597540_88597803_88601541
ES_00059500	chr9	-	725	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTGTCAAAATGAATCA	NA	False	NA	NA	False	NA	NA	NA	88601640	88570744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
ES_00059502	chr9	-	608	5	FSM	ENSMUSG00000097177.9	ENSMUST00000180783.8	1044	5	0	436	0	-436	multi-exon	FALSE	canonical	0	0	junction_1	55.97097462078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGGAATTCTTAATGAAAT	NA	False	NA	NA	False	AATGAA	-13	NA	88740854	88725998	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88726320_88739866_88739925_88740278_88740354_88740442_88740498_88740755
ES_00059503	chr9	-	331	1	FSM	ENSMUSG00000100602.2	ENSMUST00000191128.2	331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCGTCACATAAAATAAATT	711	False	NA	NA	False	NA	NA	NA	88958395	88958064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88958100_88958400
ES_00059504	chr9	-	1356	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	0	-10	0	10	multi-exon	FALSE	canonical	3	96	junction_1	7.5	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGTGCCTCTATTTTA	NA	False	NA	-2	True	AATAAA	-24	NA	89587121	89581248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_89582033_89584824_89585074_89586798
ES_00059505	chr9	-	1882	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996768	89973717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
ES_00059506	chr9	-	1824	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	0	0	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996827	89973717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ES_00059507	chr9	-	1223	11	FSM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	2089.62901970661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996797	89974207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ES_00059510	chr9	-	335	4	FSM	ENSMUSG00000062270.15	ENSMUST00000190345.2	335	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	2530.75197432612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAGAACAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	89996751	89979938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_89979943_89982495_89982577_89984352_89984440_89996588
ES_00059512	chr9	-	461	1	FSM	ENSMUSG00000081520.2	ENSMUST00000120385.2	331	1	-73	-57	-73	57	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGGGCTAGGCTAAATC	3282	False	NA	NA	False	AATAAA	-36	NA	90103751	90103290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_90103300_90103800
ES_00059514	chr9	-	3490	3	FSM	ENSMUSG00000037410.14	ENSMUST00000128874.3	3473	3	0	-17	0	17	multi-exon	FALSE	canonical	3	73	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTGTATTGGAACTGA	NA	False	NA	NA	False	AATAAA	-35	NA	90152824	90120315	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_90123232_90131843_90131998_90152404
ES_00059518	chr9	-	3520	27	FSM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	216.387107234962	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTTGTTTTTTTGCCC	8191	False	NA	-1	True	AATAAA	-17	NA	95394049	95343030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
ES_00059520	chr9	-	3111	28	FSM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	167.860448931548	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATATTTCTAAGATGCTG	8302	False	NA	NA	False	CATAAA	-25	NA	95393938	95343457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
ES_00059521	chr9	-	3392	27	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	203.484137904403	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGTTGTTTTTTTGC	8314	False	NA	-3	True	AATAAA	-15	NA	95393926	95343032	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
ES_00059523	chr9	-	327	3	FSM	ENSMUSG00000049493.14	ENSMUST00000135816.2	371	3	44	0	19	0	multi-exon	FALSE	canonical	0	0	junction_2	29.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATCACTGCCATCGGGGG	NA	False	NA	NA	False	NA	NA	NA	95727320	95667606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_95667673_95668985_95669150_95727223
ES_00059526	chr9	-	5802	24	FSM	ENSMUSG00000032413.13	ENSMUST00000034984.8	5813	24	11	0	11	0	multi-exon	FALSE	canonical	3	17	junction_5	16.7988207345585	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGTGAGACCTT	NA	False	NA	NA	False	AATAAA	-15	NA	96513659	96421352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96424529_96426331_96426519_96426840_96426945_96427641_96427851_96428299_96428383_96434355_96434463_96435165_96435240_96439452_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ES_00059527	chr9	-	845	8	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	0	-7967	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	17.5324771524745	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTAGTCTTTTTTCATA	NA	False	NA	-4	True	AATAAA	-21	NA	96513589	96461907	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_96462029_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ES_00059528	chr9	-	2992	1	Genic_Genomic	ENSMUSG00000040433.17	novel	NA	NA	NA	NA	33807	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTGTCTTTTCTAAGTG	NA	False	NA	-14	True	ATTAAA	-17	NA	96567811	96564819	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_96564800_96567800
ES_00059530	chr9	-	2920	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	0	-12	0	4	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACGGTGTGTATCTGTCCG	NA	False	NA	10	True	AATAAA	-28	NA	96771482	96705384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
ES_00059532	chr9	-	6994	4	NIC	ENSMUSG00000032449.14	novel	894	3	NA	NA	-709	995	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	274.927061034175	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAAAATTGTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	96972906	96956018	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543
ES_00059535	chr9	-	5227	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTCTTGTTTCCACCT	NA	False	NA	0	True	NA	NA	NA	96993210	96957013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
ES_00059538	chr9	-	1720	3	FSM	ENSMUSG00000032449.14	ENSMUST00000155291.8	894	3	-826	0	-709	0	multi-exon	FALSE	canonical	3	708	junction_2	296	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGAATAGCTGGGCCA	NA	False	NA	NA	False	NA	NA	NA	96972906	96962245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96962536_96967109_96967177_96971543
ES_00059542	chr9	-	2454	4	FSM	ENSMUSG00000032449.14	ENSMUST00000148337.2	685	4	-170	-1599	0	-1512	multi-exon	FALSE	canonical	3	669	junction_1	32.124756808418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGACTAAGGTAGATTT	NA	False	NA	NA	False	NA	NA	NA	96993210	96973266	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96975231_96979155_96979234_96982127_96982293_96992963
ES_00059544	chr9	-	385	1	FSM	ENSMUSG00000051074.5	ENSMUST00000058992.3	652	1	242	25	223	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATTTCAAAAAAATGATT	NA	False	NA	NA	False	AATAAA	-6	NA	98445422	98445037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_98445000_98445400
ES_00059547	chr9	-	6478	24	FSM	ENSMUSG00000032462.15	ENSMUST00000035037.14	6478	24	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	24.902380296338	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAATTTGTTGTGTAGCC	NA	False	NA	-3	True	AATAAA	-12	NA	99022140	98918706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_98921904_98922973_98923107_98924576_98924723_98926797_98926922_98928599_98928768_98934357_98934437_98936023_98936134_98937394_98937574_98942237_98942338_98943783_98943928_98944889_98945012_98946072_98946262_98947612_98947664_98952293_98952425_98953400_98953498_98955631_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98983227_98983454_98987583_98987771_99004336_99004430_99022043
ES_00059549	chr9	-	275	1	FSM	ENSMUSG00000103638.2	ENSMUST00000195852.2	1755	1	3	1477	3	-1477	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGCTCTATCGTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	99125655	99125380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99125400_99125700
ES_00059550	chr9	-	4483	23	FSM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_20	5.80538365130531	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGTATATTTCTATT	NA	False	NA	1	True	AATAAA	-20	NA	99240571	99192015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99193731_99193998_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940_99200441_99201555_99201706_99202307_99202395_99202886_99202956_99203434_99203498_99203579_99203643_99204150_99204241_99204649_99204699_99206210_99206294_99206949_99207121_99209951_99210073_99211808_99211865_99212753_99212844_99213411_99213479_99214858_99214936_99218117_99218253_99220820_99220863_99240103
ES_00059551	chr9	-	533	1	FSM	ENSMUSG00000037681.14	ENSMUST00000190002.2	2959	1	-26	2452	-26	-2452	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGCCGGGCCCGGCGGAG	NA	False	NA	NA	False	NA	NA	NA	99240636	99240103	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99240100_99240600
ES_00059552	chr9	-	4701	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTATTTCCTCTTC	3239	False	NA	-4	True	NA	NA	NA	99319434	99267472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
ES_00059553	chr9	-	1190	6	FSM	ENSMUSG00000032470.18	ENSMUST00000119472.8	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	193.993195756965	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	NA	False	NA	28	True	ATTAAA	-15	NA	99307949	99270031	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99307829
ES_00059555	chr9	-	4648	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	0	-1	0	1	multi-exon	TRUE	canonical	3	93	junction_7	54.8151294142266	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTTTCCAAGTGACTGG	NA	False	NA	7	True	AATAAA	-36	NA	99450952	99360423	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ES_00059556	chr9	-	2820	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450702	99400856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ES_00059558	chr9	-	4415	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	4	57	4	-57	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	988	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACATGTGAAAGACATTC	NA	False	NA	NA	False	NA	NA	NA	100428183	100374402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
ES_00059564	chr9	-	3056	7	FSM	ENSMUSG00000032553.15	ENSMUST00000035157.10	3064	7	8	0	0	0	multi-exon	FALSE	canonical	3	242	junction_6	16.5873110807294	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	103079328	103065230	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ES_00059565	chr9	-	1900	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.1596624119289	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_103066684_103066781_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ES_00059566	chr9	-	1752	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	124	junction_1	54.7454219500571	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_103066653_103066898_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ES_00059568	chr9	-	572	4	FSM	ENSMUSG00000033688.11	ENSMUST00000151073.3	970	4	397	1	397	-1	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCACTGAGTGTTCTCA	NA	False	NA	NA	False	AATAAA	-16	NA	103133828	103127726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103127862_103128989_103129177_103131838_103132024_103133763
ES_00059570	chr9	-	3743	5	FSM	ENSMUSG00000032803.16	ENSMUST00000116517.9	3741	5	0	-2	0	2	multi-exon	FALSE	canonical	3	39	junction_4	188.321533553654	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGAATGTGATGCTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	103242096	103230300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103241661
ES_00059571	chr9	-	3109	5	FSM	ENSMUSG00000032803.16	ENSMUST00000190226.7	3107	5	0	-2	0	2	multi-exon	FALSE	canonical	3	39	junction_4	215.031974366604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGAATGTGATGCTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	103242178	103230300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103232513_103233478_103233639_103237074_103237218_103241173_103241251_103241661
ES_00059572	chr9	-	3787	5	FSM	ENSMUSG00000032803.16	ENSMUST00000072249.13	3787	5	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_1	33.7740654941036	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATGGTGGAATGTGAT	NA	False	NA	-12	True	AATAAA	-10	NA	103242737	103230306	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103242252
ES_00059573	chr9	-	1023	5	FSM	ENSMUSG00000032803.16	ENSMUST00000189896.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	184.859913177519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAGTGGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103242818	103233148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103233226_103233478_103233639_103237074_103237218_103241173_103241251_103242252
ES_00059577	chr9	-	2301	14	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	0	28	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	152.222586945339	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTTGTTTTCAAAGTGG	NA	False	NA	15	True	NA	NA	NA	103940333	103923769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_103924188_103924254_103924354_103924417_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ES_00059578	chr9	-	2417	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	-13	0	13	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGTGTTACAGGTGAT	NA	False	NA	0	True	AATAAA	-31	NA	103940333	103923784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ES_00059582	chr9	-	7998	56	FSM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	0	14	0	-14	multi-exon	FALSE	canonical	3	149	junction_37	31.3582656798217	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAAGTCACGCAAACAC	NA	False	NA	-14	True	AATAAA	-2	NA	104140129	104028494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357_104074561_104075828_104075934_104077635_104077738_104079086_104079150_104080370_104080531_104080613_104080718_104084951_104085106_104086503_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
ES_00059586	chr9	-	594	5	FSM	ENSMUSG00000032561.16	ENSMUST00000125800.2	1507	5	6	907	6	0	multi-exon	FALSE	canonical	1	1	junction_2	1.58113883008419	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTGCCCTCTAGCATGT	NA	False	NA	NA	False	TATAAA	-1	NA	104214900	104197172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_104197272_104201250_104201404_104201841_104201929_104204079_104204176_104214741
ES_00059588	chr9	-	5642	28	FSM	ENSMUSG00000032570.18	ENSMUST00000112558.10	5642	28	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_27	76.7098107267147	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGTGTGTGTACATAAACA	NA	False	NA	NA	False	AATAAA	-16	NA	105372293	105287636	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371682_105372091
ES_00059589	chr9	-	4927	28	FSM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	-51	0	-51	0	multi-exon	FALSE	canonical	3	363	junction_24	33.8350310750022	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTCCCAGTTAGTATTG	NA	False	NA	3	True	AATAAA	-25	NA	105372383	105288556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371797_105372091
ES_00059596	chr9	-	1828	10	FSM	ENSMUSG00000020253.16	ENSMUST00000140761.9	1846	10	22	-4	22	0	multi-exon	FALSE	canonical	3	106	junction_7	13.9682178931713	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTCTCTCTTTTATTAA	3865	False	NA	0	True	NA	NA	NA	106076452	106072145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106074539_106074940_106075196_106075299_106075424_106076168
ES_00059600	chr9	-	1529	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315518	106310179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ES_00059601	chr9	-	1832	14	FSM	ENSMUSG00000023262.14	ENSMUST00000187324.8	1832	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	61.5898823628318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315360	106310189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314933_106315331
ES_00059602	chr9	-	1515	15	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	284	junction_14	59.3909565025326	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315518	106310189	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
ES_00059603	chr9	-	1242	14	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	2	-161	intron_retention	FALSE	canonical	3	198	junction_13	80.5733155058027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCTCTGGGCTTCTCGC	NA	False	NA	NA	False	NA	NA	NA	106315372	106310436	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ES_00059606	chr9	-	1265	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	2	1	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGTTGTGTTTCCTGACT	NA	False	NA	2	True	AATAAA	-29	NA	106324875	106317248	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ES_00059607	chr9	-	1260	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	0	-4	0	4	multi-exon	FALSE	canonical	0	0	junction_2	104.56165113888	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGTTTCCTGACTGTG	NA	False	NA	5	True	AATAAA	-32	NA	106324877	106317245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
ES_00059610	chr9	-	1364	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	0	0	0	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	8113	False	NA	0	True	AATAAA	-28	NA	106562881	106535944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
ES_00059611	chr9	-	1397	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	-6	0	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7880	False	NA	0	True	AATAAA	-28	NA	106563114	106535944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
ES_00059612	chr9	-	2061	6	FSM	ENSMUSG00000040813.17	ENSMUST00000163441.8	1896	6	-165	0	-61	0	multi-exon	FALSE	canonical	3	46	junction_5	161.744242555956	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7807	False	NA	0	True	AATAAA	-28	NA	106563187	106535944	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562442
ES_00059614	chr9	-	6682	1	FSM	ENSMUSG00000074102.5	ENSMUST00000055843.9	6511	1	272	-443	272	443	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAGACCCTCGTTAGAA	NA	False	NA	NA	False	AAGAAA	-32	NA	106764355	106757673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106757700_106764400
ES_00059615	chr9	-	2247	4	FSM	ENSMUSG00000032575.17	ENSMUST00000159283.8	2247	4	0	0	0	0	multi-exon	FALSE	canonical	3	771	junction_3	24.1660919471891	6124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGATAGGCGGACCCG	NA	False	NA	NA	False	NA	NA	NA	106769178	106764613	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106766425_106767359_106767502_106768269_106768398_106769012
ES_00059616	chr9	-	723	9	FSM	ENSMUSG00000039716.13	ENSMUST00000168759.2	723	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.78107443266087	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGTGGTCATGACTACGAG	NA	False	NA	NA	False	NA	NA	NA	106829539	106791848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106791865_106807218_106807324_106809119_106809207_106810173_106810323_106815099_106815194_106815316_106815378_106818481_106818578_106821105_106821192_106829510
ES_00059618	chr9	-	2817	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	0	-1	0	1	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGGTTTCTTTATGTC	NA	False	NA	-1	True	AATAAA	-25	NA	107167076	107132124	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
ES_00059619	chr9	-	2672	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	3	142	junction_1	26.8365114556165	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGATTCCTGGGTTTC	NA	False	NA	-9	True	AATAAA	-17	NA	107166978	107132132	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_107132548_107132586_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
ES_00059620	chr9	-	2764	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_11	44.9833761764433	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAATGATTCCTGGGTT	NA	False	NA	-11	True	AATAAA	-15	NA	107167076	107132134	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_107132548_107132586_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166727
ES_00059621	chr9	-	2193	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	0	-1	0	1	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGCCTCTTTTCACGG	NA	False	NA	NA	False	NA	NA	NA	107215549	107204281	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
ES_00059623	chr9	-	1155	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	7	0	7	0	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419385	107416773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
ES_00059627	chr9	-	2202	10	NNC	ENSMUSG00000032562.14	novel	2215	9	NA	NA	0	40956	intron_retention	FALSE	non_canonical	0	0	junction_1	421.366325478097	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGAAATGCTGCTCTA	4803	False	NA	NA	False	NA	NA	NA	107512533	107450367	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_107450394_107491329_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ES_00059628	chr9	-	3369	18	FSM	ENSMUSG00000057969.16	ENSMUST00000123926.8	3433	18	0	64	0	-64	multi-exon	TRUE	canonical	1	1	junction_4	15.798471302684	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTCTTCATTTTTATT	8039	False	NA	NA	False	NA	NA	NA	107482720	107474936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477240_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645
ES_00059631	chr9	-	1777	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4825	False	NA	0	True	AATAAA	-24	NA	107512511	107491323	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ES_00059632	chr9	-	2217	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	0	-2	0	2	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTTCTTTTCTCCTGG	4770	False	NA	2	True	AATAAA	-26	NA	107512566	107491321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ES_00059635	chr9	-	451	3	FSM	ENSMUSG00000034837.13	ENSMUST00000194153.2	525	3	75	-1	75	1	multi-exon	FALSE	canonical	0	0	junction_2	1.5	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCAGGAGGCAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	107555459	107554571	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107554715_107554829_107554873_107555194
ES_00059637	chr9	-	284	3	FSM	ENSMUSG00000034684.13	ENSMUST00000192157.2	376	3	0	92	0	-92	multi-exon	FALSE	canonical	3	14	junction_1	3.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGACCGCCAGAACCTC	4990	False	NA	NA	False	NA	NA	NA	107561970	107561420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107561579_107561748_107561791_107561886
ES_00059639	chr9	-	3203	25	FSM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	-14	16	-14	-16	multi-exon	FALSE	canonical	3	262	junction_19	112.690456068333	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTAGCCTTAAGAGA	9691	False	NA	NA	False	NA	NA	NA	107648209	107617585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ES_00059640	chr9	-	6321	23	FSM	ENSMUSG00000032580.13	ENSMUST00000183307.8	6321	23	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_22	95.559855328549	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9720	False	NA	-1	True	AAGAAA	-17	NA	107648180	107617693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ES_00059641	chr9	-	2991	24	FSM	ENSMUSG00000032580.13	ENSMUST00000182371.8	2986	24	0	-5	0	0	multi-exon	FALSE	canonical	3	16	junction_19	139.730783549852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9721	False	NA	-1	True	AAGAAA	-17	NA	107648179	107617693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ES_00059652	chr9	-	3707	22	NIC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_21	111.389126107381	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7629	False	NA	NA	False	AATAAA	-18	NA	107749904	107650761	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107738821_107738929_107749847
ES_00059654	chr9	-	3776	21	NNC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_19	89.637310869972	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7590	False	NA	NA	False	AATAAA	-18	NA	107749943	107650761	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730740_107737547_107737659_107749847
ES_00059655	chr9	-	3716	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7513	False	NA	NA	False	AATAAA	-18	NA	107750020	107650761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
ES_00059657	chr9	-	656	4	FSM	ENSMUSG00000032582.15	ENSMUST00000192474.2	656	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	28.709270666846	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCCTCCTCCCCTTAAG	7563	False	NA	NA	False	AAGAAA	-28	NA	107749970	107730558	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107730874_107737547_107737659_107738821_107738929_107749847
ES_00059658	chr9	-	1047	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	-29	7	-29	-7	multi-exon	FALSE	canonical	3	12	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAACTGCTGGTCCCAT	9727	False	NA	NA	False	AATAAA	-10	NA	107863107	107861428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107862264_107862895
ES_00059659	chr9	-	4727	39	FSM	ENSMUSG00000041528.16	ENSMUST00000162355.8	4727	39	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_38	17.254651305945	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGGCCCGCTCTTCTT	NA	False	NA	-2	True	ATTAAA	-16	NA	107956500	107928870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107955998
ES_00059661	chr9	-	4554	39	NIC	ENSMUSG00000041528.16	novel	4426	39	NA	NA	-560	-243	combination_of_known_junctions	FALSE	canonical	1	4	junction_38	17.6645606682167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACAAGGACTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	107957499	107929134	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956888
ES_00059662	chr9	-	3809	35	FSM	ENSMUSG00000041528.16	ENSMUST00000159136.8	3789	35	0	-20	0	20	multi-exon	FALSE	canonical	1	4	junction_34	19.1404389025979	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTAACCGGGTGTCAATA	NA	False	NA	NA	False	NA	NA	NA	107956927	107933077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956888
ES_00059665	chr9	-	2467	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	127	-76	0	76	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTTTGATATCCACAGT	NA	False	NA	44	True	NA	NA	NA	107971678	107962535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
ES_00059666	chr9	-	5435	4	FSM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	0	227	0	-227	multi-exon	FALSE	canonical	3	259	junction_3	109.352640571684	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCTGACTGTCTATTT	NA	False	NA	70	True	AATAAA	-25	NA	108141157	108082059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140978
ES_00059667	chr9	-	5395	3	FSM	ENSMUSG00000039952.16	ENSMUST00000166905.8	4244	3	-57	-1094	-17	-227	multi-exon	FALSE	canonical	3	32	junction_2	218.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCTGACTGTCTATTT	NA	False	NA	70	True	AATAAA	-25	NA	108141174	108082059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108086861_108095211_108095610_108140978
ES_00059668	chr9	-	5485	4	FSM	ENSMUSG00000039952.16	ENSMUST00000171412.7	4415	4	27	-1097	0	-227	multi-exon	FALSE	canonical	3	68	junction_3	198.863995959271	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCTGACTGTCTATTT	NA	False	NA	70	True	AATAAA	-25	NA	108140908	108082059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140679
ES_00059670	chr9	-	1076	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	18	0	18	0	multi-exon	TRUE	canonical	3	19	junction_2	5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTCTTTTTGAGGA	7133	False	NA	NA	False	NA	NA	NA	108183341	108180852	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108181453_108182524_108182580_108182920
ES_00059674	chr9	-	1471	5	FSM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	18	-2	18	2	multi-exon	FALSE	canonical	3	428	junction_3	47.1301389770919	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGGATCTGTTTTCAGA	8161	False	NA	NA	False	NA	NA	NA	108444615	108442733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
ES_00059675	chr9	-	4163	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGCCTTACCATCTCC	5751	False	NA	-1	True	AATAAA	-20	NA	108455938	108449509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
ES_00059680	chr9	-	1297	3	FSM	ENSMUSG00000006675.11	ENSMUST00000193621.2	1297	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	6.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTGTCCTGTCTGTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108474779	108460189	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108461032_108474097_108474180_108474406
ES_00059681	chr9	-	2618	6	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	0	10236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.362007154364	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAGAAAGAAAGAAAGCC	4652	False	NA	NA	False	NA	NA	NA	108485882	108469904	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_108469932_108480140_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800
ES_00059682	chr9	-	3883	16	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	359	junction_14	154.606683771002	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526541	108480140	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521565_108522131_108522194_108526427
ES_00059684	chr9	-	3671	1	FSM	ENSMUSG00000064145.13	ENSMUST00000193923.2	3664	1	0	-7	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGAGTCTTTTTTTCAC	6725	False	NA	NA	False	AATAAA	-22	NA	108483809	108480138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108480100_108483800
ES_00059685	chr9	-	3939	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-8	2	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	243.725439467754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGAGTCTTTTTTTCAC	NA	False	NA	NA	False	AATAAA	-22	NA	108526549	108480138	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521565_108522131_108522194_108526427
ES_00059686	chr9	-	741	7	FSM	ENSMUSG00000064145.13	ENSMUST00000193643.2	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	317.028214657448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGTGCGGAAGGAAAACC	NA	False	NA	NA	False	NA	NA	NA	108526541	108493983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
ES_00059687	chr9	-	1059	2	FSM	ENSMUSG00000049734.10	ENSMUST00000112053.2	1054	2	0	-5	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	108888319	108887000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108887997_108888256
ES_00059690	chr9	-	2571	13	FSM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	1	0	1	0	multi-exon	FALSE	canonical	3	123	junction_2	14.834971819619	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCCTGAGTCCGA	NA	False	NA	1	True	ATTAAA	-26	NA	108903191	108888814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ES_00059694	chr9	-	3767	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	37	2	-11	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCTGTCCTCCCAA	NA	False	NA	-3	True	AATAAA	-19	NA	109930118	109913389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
ES_00059695	chr9	-	3834	22	FSM	ENSMUSG00000032480.18	ENSMUST00000111991.9	3829	22	0	-5	0	3	multi-exon	FALSE	canonical	3	9	junction_20	148.964330905375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTCCTCCCAAGGGCT	NA	False	NA	2	True	AATAAA	-24	NA	109946479	109913384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944558_109944651_109946425
ES_00059696	chr9	-	3971	23	FSM	ENSMUSG00000032480.18	ENSMUST00000198425.5	3968	23	0	-3	0	3	multi-exon	FALSE	canonical	3	120	junction_20	140.114150629448	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTCCTCCCAAGGGCT	NA	False	NA	2	True	AATAAA	-24	NA	109946490	109913384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
ES_00059699	chr9	-	4439	23	FSM	ENSMUSG00000032480.18	ENSMUST00000197928.5	4441	23	0	2	0	0	multi-exon	FALSE	canonical	3	162	junction_20	135.338876788039	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCTGTCCTCCCAA	NA	False	NA	-3	True	AATAAA	-19	NA	109946898	109913389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109946425
ES_00059700	chr9	-	4623	23	FSM	ENSMUSG00000032480.18	ENSMUST00000200066.5	4623	23	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_22	161.847475642658	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	-4	True	AATAAA	-18	NA	109946403	109913390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109945745
ES_00059709	chr9	-	3112	1	FSM	ENSMUSG00000091102.2	ENSMUST00000168137.2	3383	1	114	157	114	-157	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACATACTGCAGAAGAAA	5731	False	NA	NA	False	NA	NA	NA	110204384	110201272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_110201300_110204400
ES_00059713	chr9	-	4519	10	FSM	ENSMUSG00000054792.16	ENSMUST00000198164.5	4538	10	7	12	7	-12	multi-exon	FALSE	canonical	1	3	junction_4	2.46956786343254	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACGCCTAATATTCTTG	1970	False	NA	-16	True	AATAAA	-3	NA	110305750	110255007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_110258086_110259013_110259126_110261501_110261607_110265078_110265317_110266414_110266552_110267965_110268127_110275741_110275941_110279787_110279929_110284424_110284556_110305533
ES_00059716	chr9	-	6011	37	ISM	ENSMUSG00000056724.16	ENSMUST00000167320.8	8803	54	17199	4	1655	-4	3prime_fragment	TRUE	canonical	2	7	junction_5	3.81598328023875	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCGGTTTCTTGAGTAC	NA	False	NA	-2	True	AATAAA	-19	NA	110466030	110453860	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802_110461963_110462044_110462224_110462749_110463266_110463431_110463539_110463780_110463941_110464113_110464273_110464365_110464520_110464681_110464785_110464928_110465089_110465362_110465497_110465629_110465805_110465958
ES_00059718	chr9	-	1948	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	0	-16	0	16	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTAAGTGGTAAGTTAAA	NA	False	NA	1	True	AGTAAA	-37	NA	110775226	110768654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ES_00059723	chr9	-	2580	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	174	0	-17	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100685	111057322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ES_00059730	chr9	-	3202	18	NNC	ENSMUSG00000032504.16	novel	5951	18	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	77.3019514339821	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTGTTATGTTTTGTCA	NA	False	NA	-8	True	AATAAA	-17	NA	113537297	113483539	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_113484176_113485084_113485276_113486144_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
ES_00059732	chr9	-	3464	15	FSM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_13	8.10139821643304	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCATTGAAGTAGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	113855829	113805774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
ES_00059733	chr9	-	2191	15	NIC	ENSMUSG00000032507.16	novel	3464	15	NA	NA	-3	4	combination_of_known_junctions	FALSE	canonical	3	6	junction_14	11.0628999408853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTAGAATGGATGTGGT	NA	False	NA	-8	True	AGTAAA	-15	NA	113875262	113807100	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113875140
ES_00059735	chr9	-	9598	4	FSM	ENSMUSG00000079259.3	ENSMUST00000111816.3	9332	4	-265	-1	-265	1	multi-exon	FALSE	canonical	3	18	junction_1	6.79869268479038	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCCGTGTGATTTTT	NA	False	NA	-2	True	AATAAA	-23	NA	114393702	114336199	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114343165_114344800_114344936_114354021_114354190_114391372
ES_00059737	chr9	-	2853	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATATGTTGCATGGTG	NA	False	NA	NA	False	NA	NA	NA	114469142	114414945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00059738	chr9	-	2869	20	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	122	junction_5	132.25432982036	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTCTAGCTCTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	114469252	114415036	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439791_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00059739	chr9	-	2733	19	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	162	junction_7	96.2047231971076	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTCTAGCTCTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	114469152	114415036	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439791_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00059740	chr9	-	2915	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	2	-6	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCAGAAGATATGTTGC	NA	False	NA	NA	False	NA	NA	NA	114469246	114414951	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00059741	chr9	-	1724	10	FSM	ENSMUSG00000056167.9	ENSMUST00000216785.2	1723	10	0	-1	0	1	multi-exon	FALSE	canonical	3	407	junction_3	40.9103204703612	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGAATCTAAGACCTCAT	NA	False	NA	NA	False	NA	NA	NA	114469252	114446594	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00059743	chr9	-	887	4	FSM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	0	-13	0	10	multi-exon	FALSE	canonical	3	20	junction_2	609.72343457232	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATGAGATGTCTCTAAC	NA	False	NA	-4	True	AATAAA	-26	NA	114610900	114585893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114586360_114587872_114587955_114592286_114592461_114610735
ES_00059746	chr9	-	679	2	FSM	ENSMUSG00000032436.18	ENSMUST00000216760.2	665	2	0	-14	0	14	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGGAGATGACTCAGTGA	NA	False	NA	NA	False	NA	NA	NA	114610910	114599774	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114600279_114610735
ES_00059749	chr9	-	377	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATCCCTTGGCCAGGCAG	7274	False	NA	NA	False	NA	NA	NA	114811807	114811430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114811400_114811800
ES_00059753	chr9	-	3397	7	FSM	ENSMUSG00000032440.14	ENSMUST00000035014.8	3476	7	79	0	-16	0	multi-exon	FALSE	canonical	1	1	junction_6	1.95078331845327	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGAGTTCAACCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	116004349	115917996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_115919626_115922013_115922142_115934101_115934244_115938571_115939372_115958883_115959075_115960612_115960782_116004011
ES_00059754	chr9	-	416	2	FSM	ENSMUSG00000032443.18	ENSMUST00000187329.2	1469	2	0	1053	0	-1053	multi-exon	FALSE	canonical	0	0	junction_1	0	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAACGTATTTATTGT	3246	False	NA	NA	False	NA	NA	NA	117869327	117842941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_117843317_117869286
ES_00059758	chr9	-	274	1	FSM	ENSMUSG00000066270.4	ENSMUST00000139408.2	343	1	10	59	10	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	20534	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTGATAGAGACTGGG	7980	False	NA	NA	False	NA	NA	NA	118667013	118666739	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_118666700_118667000
ES_00059761	chr9	-	1049	8	NIC	ENSMUSG00000010651.5	novel	1689	12	NA	NA	3060	-203	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	65.3517952535134	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATTTAGAAAATGTAAT	NA	False	NA	NA	False	NA	NA	NA	118983101	118977293	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982993
ES_00059765	chr9	-	1960	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	765	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGACTGACGGTATGTG	NA	False	NA	1	True	AATAAA	-26	NA	119169107	119164999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
ES_00059766	chr9	-	3893	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	13	0	-2	0	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAACTTGTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	119766618	119754322	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
ES_00059767	chr9	-	2907	5	FSM	ENSMUSG00000032515.9	ENSMUST00000035101.9	2906	5	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_4	11.4972822875669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCTTCTTGGTGAGGT	NA	False	NA	3	True	AATAAA	-18	NA	119813509	119800227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813471
ES_00059768	chr9	-	2977	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-83	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	4.71036092035419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCTTCTTGGTGAGGT	NA	False	NA	3	True	AATAAA	-18	NA	119813807	119800227	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
ES_00059769	chr9	-	204	2	Intergenic	novelGene_4254	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	32	junction_1	0	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAACTGTGCAAGTCAT	NA	False	NA	NA	False	NA	NA	NA	120499680	120451055	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_120451210_120499630
ES_00059770	chr9	-	586	2	FSM	ENSMUSG00000111831.2	ENSMUST00000215385.2	790	2	204	0	204	0	multi-exon	FALSE	canonical	3	5	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCTCATCGGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	120580005	120572655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_120572855_120579618
ES_00059772	chr9	-	4103	37	FSM	ENSMUSG00000040936.16	ENSMUST00000171923.8	4103	37	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_10	8.07583653886513	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGTGTCAAACCCTCT	NA	False	NA	-1	True	AATAAA	-16	NA	121106263	120793519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086485_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ES_00059775	chr9	-	796	5	FSM	ENSMUSG00000079235.11	ENSMUST00000142783.2	969	5	0	173	0	-173	multi-exon	FALSE	canonical	2	2	junction_3	1.80277563773199	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACAGCAAGCACAGAGC	2381	False	NA	NA	False	NA	NA	NA	121639212	121627819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_121628207_121629568_121629718_121637217_121637341_121638146_121638231_121639159
ES_00059776	chr9	-	1983	3	FSM	ENSMUSG00000038412.9	ENSMUST00000215007.2	1980	3	0	-3	0	3	multi-exon	FALSE	canonical	3	2040	junction_2	90	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTCTTGTTTTTATT	NA	False	NA	0	True	ATTAAA	-16	NA	121686678	121677625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_121679389_121681556_121681676_121686577
ES_00059777	chr9	-	2235	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	0	-3	0	3	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTCTTGTTTTTATT	NA	False	NA	0	True	ATTAAA	-16	NA	121687428	121677625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
ES_00059778	chr9	-	452	4	NIC	ENSMUSG00000038412.9	novel	605	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	216	junction_3	942.112637757409	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686627	121678603	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_121678756_121679253_121679389_121681556_121681672_121686577
ES_00059783	chr9	-	1309	7	NIC	ENSMUSG00000047036.9	novel	1220	6	NA	NA	20	1	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	51.4025507365366	2066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGAGCGGTCATGTTCT	NA	False	NA	NA	False	NA	NA	NA	122695030	122673592	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_122673712_122683771_122683883_122685763_122685891_122686131_122686227_122686534_122686704_122690773_122691410_122694978
ES_00059784	chr9	-	6178	7	FSM	ENSMUSG00000047036.9	ENSMUST00000216063.2	6189	7	11	0	-10	0	multi-exon	FALSE	canonical	3	35	junction_6	50.4669859082813	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATTATACAGAAGTTC	NA	False	NA	6	True	AATAAA	-35	NA	122695060	122677974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691325_122694978
ES_00059785	chr9	-	6248	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	36.0262250157977	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATTATACAGAAGTTC	NA	False	NA	6	True	AATAAA	-35	NA	122695045	122677974	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691410_122694978
ES_00059786	chr9	-	6251	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	25	-13	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	42.9434382518318	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCTGACATCTATATAAT	NA	False	NA	-7	True	AATAAA	-22	NA	122695025	122677987	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686131_122686227_122686534_122686704_122690773_122691410_122694978
ES_00059789	chr9	-	686	3	FSM	ENSMUSG00000097322.9	ENSMUST00000180486.8	2421	3	48	1687	10	-1687	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCAATAATCTTGAACG	NA	False	NA	NA	False	NA	NA	NA	122732201	122715831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_122716295_122730979_122731092_122732090
ES_00059792	chr9	-	5557	7	FSM	ENSMUSG00000025786.18	ENSMUST00000238520.2	5376	7	-63	-118	-5	118	multi-exon	FALSE	canonical	3	33	junction_1	93.3196418529109	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGTAAGAAATAGGCCC	8708	False	NA	NA	False	NA	NA	NA	122942275	122895106	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_122899684_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
ES_00059793	chr9	-	7048	7	FSM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	1	-62	0	62	multi-exon	FALSE	canonical	3	232	junction_1	22.8454955443445	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGTCTCATTCCAAAAT	8714	False	NA	NA	False	NA	NA	NA	122942269	122901312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
ES_00059794	chr9	-	2492	8	FSM	ENSMUSG00000025786.18	ENSMUST00000026892.15	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	109.785505158273	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCTCTGCTCTCTCCC	8738	False	NA	-1	True	AATAAA	-16	NA	122942245	122905896	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122927987_122928040_122929327_122929658_122942060
ES_00059797	chr9	-	1408	1	FSM	ENSMUSG00000058492.6	ENSMUST00000216438.2	1370	1	-17	-21	3	21	mono-exon	FALSE	NA	NA	NA	NA	NA	868	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAAATACCTTGTC	NA	False	NA	NA	False	ATTAAA	-35	NA	123137051	123135643	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_123135600_123137100
ES_00059799	chr9	-	1416	1	FSM	ENSMUSG00000058922.8	ENSMUST00000168019.2	960	1	-84	-372	-84	372	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTGGAAACAAAAATCAGAAA	NA	False	NA	NA	False	AATAAA	-41	NA	123519341	123517925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_123517900_123519300
ES_00059800	chr9	-	4070	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAAGGAAGGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	123546690	123526076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
ES_00059803	chr9	-	461	4	FSM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	43.70608907489	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATCCCTATGAGTACT	NA	False	NA	NA	False	NA	NA	NA	124044769	124032987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_124033196_124033755_124033817_124033999_124034127_124044704
ES_00059804	chr9	-	2596	4	FSM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	27	0	2	0	multi-exon	FALSE	non_canonical	0	0	junction_2	8.73053390247253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTATTATCATGTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	124075299	124054433	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124075189
ES_00059806	chr9	-	796	1	FSM	ENSMUSG00000111523.2	ENSMUST00000217222.2	774	1	-55	33	-55	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGAATAAAATCATTATC	NA	False	NA	NA	False	AATAAA	-13	NA	124207453	124206657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_124206700_124207500
ES_00059807	chr9	+	269	1	Intergenic	novelGene_4033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCATAGTTTTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	3490809	3491078	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_3490800_3491100
ES_00059808	chr9	+	351	1	Intergenic	novelGene_4036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCGGGAGGGCCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	4917086	4917437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_4917100_4917400
ES_00059809	chr9	+	316	1	Intergenic	novelGene_4037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTATGGAATATAAAGAGA	NA	False	NA	NA	False	AATAAA	-14	NA	4979905	4980221	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_4979900_4980200
ES_00059812	chr9	+	240	1	Intergenic	novelGene_4040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGCCTTTGTTGCCCA	NA	False	NA	NA	False	NA	NA	NA	5066794	5067034	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5066800_5067000
ES_00059813	chr9	+	256	1	Intergenic	novelGene_4051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTTTAACTGGGACACA	669	False	NA	NA	False	NA	NA	NA	7723744	7724000	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7723700_7724000
ES_00059814	chr9	+	284	1	Intergenic	novelGene_4052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGCTAATATCATTTAA	1190	False	NA	NA	False	NA	NA	NA	7724265	7724549	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7724300_7724500
ES_00059815	chr9	+	206	1	Intergenic	novelGene_4053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTAAGGGTTTCTTAACA	1727	False	NA	NA	False	NA	NA	NA	7753424	7753630	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7753400_7753600
ES_00059816	chr9	+	1661	1	Intergenic	novelGene_4054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACGTTGGGCCAAAGCAAC	5794	False	NA	NA	False	NA	NA	NA	7799098	7800759	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7799100_7800800
ES_00059817	chr9	+	3365	1	Intergenic	novelGene_4056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATGTAGCCAAGACAG	8288	False	NA	NA	False	NA	NA	NA	7801592	7804957	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7801600_7805000
ES_00059818	chr9	+	638	1	Intergenic	novelGene_4062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	367	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTAAGTAAAAAAAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	11949518	11950156	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_11949500_11950200
ES_00059819	chr9	+	211	1	Intergenic	novelGene_4064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATCAACTAGGAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	11951234	11951445	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_11951200_11951400
ES_00059820	chr9	+	207	1	Intergenic	novelGene_4065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCAACTTTTGCCTAGG	NA	False	NA	NA	False	NA	NA	NA	13702394	13702601	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_13702400_13702600
ES_00059821	chr9	+	233	1	Intergenic	novelGene_4066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTTAACTTTGTACTG	9257	False	NA	NA	False	AATATA	-8	NA	14652909	14653142	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_14652900_14653100
ES_00059822	chr9	+	235	1	Intergenic	novelGene_4068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7719	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACTCATGTCCTGATTA	NA	False	NA	NA	False	NA	NA	NA	19120455	19120690	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_19120500_19120700
ES_00059823	chr9	+	967	1	Intergenic	novelGene_4070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGACACGAACATACATG	NA	False	NA	NA	False	NA	NA	NA	19518304	19519271	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_19518300_19519300
ES_00059824	chr9	+	201	1	Intergenic	novelGene_4072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCAGTTAAGAGCACTGA	NA	False	NA	NA	False	AAAAAG	-2	NA	20772205	20772406	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_20772200_20772400
ES_00059826	chr9	+	222	1	Intergenic	novelGene_4074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAATGGTCCTGGGCTGG	4860	False	NA	NA	False	NA	NA	NA	21023965	21024187	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_21024000_21024200
ES_00059827	chr9	+	576	1	Intergenic	novelGene_4076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTCACCAGCCCAAACTT	2819	False	NA	NA	False	NA	NA	NA	21134329	21134905	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_21134300_21134900
ES_00059828	chr9	+	206	1	Intergenic	novelGene_4081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATAGATTGCCATGAGAA	9445	False	NA	NA	False	NA	NA	NA	21807515	21807721	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_21807500_21807700
ES_00059829	chr9	+	222	1	Intergenic	novelGene_4085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACCACAACCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	24777183	24777405	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_24777200_24777400
ES_00059830	chr9	+	1412	1	Intergenic	novelGene_4086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGCCGCGGAGGTGGGT	NA	False	NA	NA	False	NA	NA	NA	25162306	25163718	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_25162300_25163700
ES_00059831	chr9	+	221	1	Intergenic	novelGene_4087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	569	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATTATTCTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	25778258	25778479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_25778300_25778500
ES_00059832	chr9	+	210	1	Intergenic	novelGene_4088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATTTTTCTAACCCTG	2946	False	NA	NA	False	NA	NA	NA	26763333	26763543	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_26763300_26763500
ES_00059833	chr9	+	254	1	Intergenic	novelGene_4089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCATGGTTAAAGCATA	NA	False	NA	NA	False	NA	NA	NA	26870302	26870556	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_26870300_26870600
ES_00059835	chr9	+	233	1	Intergenic	novelGene_4098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATATTTTCACTGAAGCT	9372	False	NA	NA	False	AAAAAG	-37	NA	32087607	32087840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_32087600_32087800
ES_00059836	chr9	+	208	1	Intergenic	novelGene_4099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTTATGCCGGCCAGT	8306	False	NA	NA	False	NA	NA	NA	32124350	32124558	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_32124400_32124600
ES_00059837	chr9	+	215	1	Intergenic	novelGene_4101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACCAGCGAAGAGACAGT	NA	False	NA	NA	False	NA	NA	NA	35239515	35239730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_35239500_35239700
ES_00059839	chr9	+	273	1	Intergenic	novelGene_4104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1438	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCAGCGTTCCTCTTAG	NA	False	NA	NA	False	NA	NA	NA	36006176	36006449	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_36006200_36006400
ES_00059840	chr9	+	205	1	Intergenic	novelGene_4105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTGTACTGAGCTAGT	NA	False	NA	NA	False	NA	NA	NA	37396124	37396329	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_37396100_37396300
ES_00059841	chr9	+	225	1	Intergenic	novelGene_4106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACACCAAGGCAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	38551163	38551388	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_38551200_38551400
ES_00059842	chr9	+	528	1	Intergenic	novelGene_4107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	519	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACATCTGCAGAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	38551702	38552230	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_38551700_38552200
ES_00059843	chr9	+	220	1	Intergenic	novelGene_4113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGATCTATTAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	42914151	42914371	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_42914200_42914400
ES_00059844	chr9	+	243	1	Intergenic	novelGene_4114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	266	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCAAAAAATATACTTTTT	NA	False	NA	NA	False	NA	NA	NA	42997464	42997707	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_42997500_42997700
ES_00059846	chr9	+	210	1	Intergenic	novelGene_4125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTTGGCCCTGGCGTT	264	False	NA	NA	False	NA	NA	NA	45945598	45945808	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_45945600_45945800
ES_00059847	chr9	+	670	1	Intergenic	novelGene_4126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTGTGCCAGCCGGCCT	NA	False	NA	NA	False	ATTAAA	-40	NA	48110657	48111327	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_48110700_48111300
ES_00059849	chr9	+	230	1	Intergenic	novelGene_4130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTGTTTTTTAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	50311842	50312072	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50311800_50312100
ES_00059851	chr9	+	395	1	Intergenic	novelGene_4131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGCTGGAACAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	50540166	50540561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50540200_50540600
ES_00059852	chr9	+	286	1	Intergenic	novelGene_4135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTCCTAAAACGAGCA	NA	False	NA	NA	False	NA	NA	NA	50542119	50542405	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50542100_50542400
ES_00059853	chr9	+	203	1	Intergenic	novelGene_4136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCACAGAACCTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	50901725	50901928	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50901700_50901900
ES_00059855	chr9	+	280	1	Intergenic	novelGene_4138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATACGCTTTAAATGTG	NA	False	NA	NA	False	NA	NA	NA	53616020	53616300	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_53616000_53616300
ES_00059856	chr9	+	221	1	Intergenic	novelGene_4140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTTCTTTTATAGCTG	NA	False	NA	NA	False	NA	NA	NA	54644685	54644906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_54644700_54644900
ES_00059859	chr9	+	212	1	Intergenic	novelGene_4141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTCTGACCTCATCAT	NA	False	NA	NA	False	NA	NA	NA	55023984	55024196	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_55024000_55024200
ES_00059860	chr9	+	257	1	Intergenic	novelGene_4143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGCCACTCTTAACACA	NA	False	NA	NA	False	NA	NA	NA	55139767	55140024	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_55139800_55140000
ES_00059861	chr9	+	203	1	Intergenic	novelGene_4144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTTAATAAAAACAGATGG	9558	False	NA	NA	False	NA	NA	NA	55159624	55159827	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_55159600_55159800
ES_00059863	chr9	+	296	1	Intergenic	novelGene_4147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	285	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCCAATCACAGGCCT	186	False	NA	NA	False	NA	NA	NA	56419673	56419969	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_56419700_56420000
ES_00059864	chr9	+	224	1	Intergenic	novelGene_4148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTTTTAATGGT	NA	False	NA	NA	False	NA	NA	NA	56649715	56649939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_56649700_56649900
ES_00059866	chr9	+	212	1	Intergenic	novelGene_4159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATTCTTAGAAGCAAAATT	NA	False	NA	NA	False	NA	NA	NA	59738318	59738530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_59738300_59738500
ES_00059868	chr9	+	252	1	Intergenic	novelGene_4161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGGTGGAACTGGGA	NA	False	NA	NA	False	NA	NA	NA	59885785	59886037	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_59885800_59886000
ES_00059870	chr9	+	245	1	Intergenic	novelGene_4166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGGCTGGCCTCAAAC	NA	False	NA	NA	False	NA	NA	NA	62808363	62808608	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_62808400_62808600
ES_00059871	chr9	+	213	1	Intergenic	novelGene_4168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGTTCTATTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	63325154	63325367	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_63325200_63325400
ES_00059872	chr9	+	206	1	Intergenic	novelGene_4169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAGACTTTCAATGAGC	898	False	NA	NA	False	NA	NA	NA	63720172	63720378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_63720200_63720400
ES_00059873	chr9	+	762	1	Intergenic	novelGene_4170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTGGGGACTTGCTA	NA	False	NA	NA	False	AATAAA	-28	NA	63806369	63807131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_63806400_63807100
ES_00059874	chr9	+	208	1	Intergenic	novelGene_4171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAGGTCCTCACGCTTAC	NA	False	NA	NA	False	AAAACA	-12	NA	64034773	64034981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_64034800_64035000
ES_00059878	chr9	+	202	1	Intergenic	novelGene_4177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCGTGTAATTAACATTT	NA	False	NA	NA	False	NA	NA	NA	65478742	65478944	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_65478700_65478900
ES_00059880	chr9	+	371	1	Intergenic	novelGene_4179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAGCAAAAAACAAACAAC	NA	False	NA	NA	False	NA	NA	NA	65490975	65491346	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_65491000_65491300
ES_00059881	chr9	+	264	1	Intergenic	novelGene_4183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTGGATGATATTTTCT	NA	False	NA	NA	False	NA	NA	NA	66285399	66285663	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_66285400_66285700
ES_00059882	chr9	+	208	1	Intergenic	novelGene_4184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCCATAGGGTTGTGCC	NA	False	NA	NA	False	AAAAAG	-5	NA	66390117	66390325	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_66390100_66390300
ES_00059883	chr9	+	230	1	Intergenic	novelGene_4185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCCCAACTCTTAAAAGC	9185	False	NA	NA	False	NA	NA	NA	66439716	66439946	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_66439700_66439900
ES_00059884	chr9	+	239	1	Intergenic	novelGene_4187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGTCTTTGTGCTTGAT	NA	False	NA	NA	False	NA	NA	NA	66957568	66957807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_66957600_66957800
ES_00059885	chr9	+	203	1	Intergenic	novelGene_4190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGTTTTGAGAGTAGC	NA	False	NA	NA	False	NA	NA	NA	68756036	68756239	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_68756000_68756200
ES_00059887	chr9	+	267	1	Intergenic	novelGene_4195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAATTTAAAAAAC	2484	False	NA	NA	False	AATAAA	-10	NA	72540230	72540497	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_72540200_72540500
ES_00059889	chr9	+	213	1	Intergenic	novelGene_4200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1736	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGGGAACTTTTTAACTG	NA	False	NA	NA	False	NA	NA	NA	74934711	74934924	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_74934700_74934900
ES_00059890	chr9	+	205	1	Intergenic	novelGene_4202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTTTTTTTA	174	False	NA	NA	False	NA	NA	NA	75348065	75348270	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_75348100_75348300
ES_00059891	chr9	+	3303	1	Intergenic	novelGene_4204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTCATTCTGATCAAAG	NA	False	NA	NA	False	NA	NA	NA	75639721	75643024	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_75639700_75643000
ES_00059892	chr9	+	226	1	Intergenic	novelGene_4205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6728	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTATTGCTGCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	75962879	75963105	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_75962900_75963100
ES_00059894	chr9	+	284	1	Intergenic	novelGene_4207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGACAGCAACAGTG	NA	False	NA	NA	False	NA	NA	NA	77975153	77975437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_77975200_77975400
ES_00059895	chr9	+	202	1	Intergenic	novelGene_4209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTCTTCTTAATCAG	2827	False	NA	NA	False	NA	NA	NA	78208849	78209051	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78208800_78209100
ES_00059899	chr9	+	230	1	Intergenic	novelGene_4215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAGAAAAATCCCTGGGC	6315	False	NA	NA	False	NA	NA	NA	78527043	78527273	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78527000_78527300
ES_00059900	chr9	+	201	1	Intergenic	novelGene_4216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTTTCTTTATAATGT	NA	False	NA	NA	False	NA	NA	NA	81743281	81743482	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_81743300_81743500
ES_00059901	chr9	+	203	1	Intergenic	novelGene_4217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTATTTTTTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	81974713	81974916	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_81974700_81974900
ES_00059902	chr9	+	2209	1	Intergenic	novelGene_4218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTGACTCTTAATAACT	NA	False	NA	NA	False	NA	NA	NA	84766483	84768692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_84766500_84768700
ES_00059903	chr9	+	234	1	Intergenic	novelGene_4219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAAAGAAGTTCTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	84771063	84771297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_84771100_84771300
ES_00059908	chr9	+	222	1	Intergenic	novelGene_4224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGTAGCTTTTAAACTAG	NA	False	NA	NA	False	NA	NA	NA	95896444	95896666	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_95896400_95896700
ES_00059909	chr9	+	208	1	Intergenic	novelGene_4226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCATTTTCTACTTGAC	NA	False	NA	NA	False	NA	NA	NA	96249675	96249883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_96249700_96249900
ES_00059910	chr9	+	202	1	Intergenic	novelGene_4227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAACCCGTTTCTTATGGG	6562	False	NA	NA	False	NA	NA	NA	96370493	96370695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_96370500_96370700
ES_00059912	chr9	+	673	1	Intergenic	novelGene_4232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATCAAGACTTCTGGAC	NA	False	NA	NA	False	NA	NA	NA	98753242	98753915	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_98753200_98753900
ES_00059913	chr9	+	426	1	Intergenic	novelGene_4233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCTTCTTTCCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	99052653	99053079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_99052700_99053100
ES_00059914	chr9	+	326	1	Intergenic	novelGene_4234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99325513	99325839	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_99325500_99325800
ES_00059915	chr9	+	209	1	Intergenic	novelGene_4235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAGGACTACACAAAGAA	623	False	NA	NA	False	NA	NA	NA	99576425	99576634	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_99576400_99576600
ES_00059917	chr9	+	203	1	Intergenic	novelGene_4238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGCTCTTGTGTTCCCC	NA	False	NA	NA	False	NA	NA	NA	103002259	103002462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_103002300_103002500
ES_00059918	chr9	+	331	1	Intergenic	novelGene_4239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAGAATGGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	104288624	104288955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_104288600_104289000
ES_00059919	chr9	+	228	1	Intergenic	novelGene_4240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGCATCAAACAAAGTTAG	NA	False	NA	NA	False	ATTAAA	-34	NA	104698836	104699064	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_104698800_104699100
ES_00059920	chr9	+	225	1	Intergenic	novelGene_4241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGCAGTTCAGAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	105982809	105983034	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_105982800_105983000
ES_00059922	chr9	+	260	1	Intergenic	novelGene_4246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGTCAAAAAGCCAAAACC	4606	False	NA	NA	False	NA	NA	NA	107660545	107660805	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_107660500_107660800
ES_00059923	chr9	+	340	1	Intergenic	novelGene_4248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTATCTCTTTTATGATTA	NA	False	NA	NA	False	NA	NA	NA	108630102	108630442	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_108630100_108630400
ES_00059925	chr9	+	249	1	Intergenic	novelGene_4249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTCCTTGTAACTA	NA	False	NA	NA	False	AATAAA	-27	NA	109792614	109792863	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_109792600_109792900
ES_00059927	chr9	+	206	1	Intergenic	novelGene_4250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTCCCGTTCACTGTG	NA	False	NA	NA	False	NA	NA	NA	110243617	110243823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_110243600_110243800
ES_00059928	chr9	+	217	1	Intergenic	novelGene_4251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTTGAATTTCTAATGTA	1183	False	NA	NA	False	NA	NA	NA	110859155	110859372	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_110859200_110859400
ES_00059934	chr9	+	305	1	Intergenic	novelGene_4252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCATTCTTCATTTGCTG	NA	False	NA	NA	False	NA	NA	NA	118992782	118993087	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_118992800_118993100
ES_00059935	chr9	+	255	1	Intergenic	novelGene_4253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGGGTTTCTCTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	119832676	119832931	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_119832700_119832900
ES_00059936	chr9	+	204	1	Intergenic	novelGene_4255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCAGAGCTACACAGAGAA	8363	False	NA	NA	False	NA	NA	NA	121136872	121137076	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_121136900_121137100
ES_00059937	chr9	+	225	1	Intergenic	novelGene_4256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAGACATTCTTATGAC	NA	False	NA	NA	False	NA	NA	NA	121361419	121361644	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_121361400_121361600
ES_00059943	chr9	+	810	3	ISM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	3632	1638	3632	-1638	3prime_fragment	FALSE	canonical	3	22	junction_1	18.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGCATTTGTTATCTC	363	False	NA	NA	False	AATAAA	-19	NA	4313466	4330073	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_4313807_4316826_4317072_4329848
ES_00059944	chr9	+	4541	1	Intergenic	novelGene_4043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAGTAAATCAGTGGAAG	NA	False	NA	NA	False	NA	NA	NA	5549043	5553584	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5549000_5553600
ES_00059945	chr9	+	261	2	Intergenic	novelGene_4061	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTACCAACCTGGTGCCAA	NA	False	NA	NA	False	NA	NA	NA	11946153	11950777	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_11946246_11950608
ES_00059946	chr9	+	4739	8	FSM	ENSMUSG00000079084.13	ENSMUST00000217444.4	4816	8	60	17	-14	-17	multi-exon	FALSE	canonical	2	4	junction_3	11.4944529656523	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGTTTCAGAGTCTAA	NA	False	NA	NA	False	AATAAA	-3	NA	13246595	13292850	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_13246677_13251695_13252424_13252850_13253056_13262360_13262454_13266811_13266937_13272649_13272821_13281884_13282071_13289700
ES_00059948	chr9	+	3899	2	ISM	ENSMUSG00000031925.18	ENSMUST00000177755.3	2264	4	39807	-2056	39807	13	3prime_fragment	FALSE	canonical	1	4	junction_1	0	660	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTGGTTTTCTTCTATG	NA	False	NA	NA	False	TTTAAA	-8	NA	13613562	13620697	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_13613652_13616887
ES_00059949	chr9	+	4669	17	NNC	ENSMUSG00000031918.17	novel	3106	16	NA	NA	54	2261	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_16	127.425085221671	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAGATGAACGACCGCT	NA	False	NA	NA	False	NA	NA	NA	13659759	13720038	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_13660697_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670_13718567_13719997
ES_00059950	chr9	+	1775	5	ISM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	33	17574	33	-1081	5prime_fragment	FALSE	canonical	3	46	junction_3	6.75925291729789	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTCTTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	14187629	14226823	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_14187926_14217494_14217561_14219756_14219955_14221543_14221727_14225791
ES_00059952	chr9	+	229	2	Intergenic	novelGene_4067	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTTTTTTTTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	14721931	14739054	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_14721963_14738856
ES_00059953	chr9	+	1021	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-16	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9106	False	NA	NA	False	AATAAA	-17	NA	15217543	15223094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ES_00059954	chr9	+	1211	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	198.555407884046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCTCTTAAGTGCTTAGC	9099	False	NA	4	True	AATAAA	-15	NA	15217536	15223399	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
ES_00059955	chr9	+	525	4	FSM	ENSMUSG00000001774.9	ENSMUST00000213605.2	519	4	-6	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	89.2785901919753	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGTGTATTTTCCTTTG	8540	False	NA	NA	False	TATAAA	-16	NA	18203595	18213578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321
ES_00059956	chr9	+	3989	8	NNC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_6	67.9891948198013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533380	19561027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556507_19556604_19557997
ES_00059957	chr9	+	4157	11	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	36	0	combination_of_known_splicesites	TRUE	canonical	2	3	junction_2	83.9083428509943	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533459	19561027	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_19533582_19535527_19535595_19536795_19536934_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ES_00059958	chr9	+	505	1	ISM	ENSMUSG00000051118.10	ENSMUST00000057596.10	9649	3	10951	804	10951	-804	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATAAAGTAGACTTTCAA	NA	False	NA	NA	False	NA	NA	NA	19839111	19839616	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_19839100_19839600
ES_00059959	chr9	+	546	1	FSM	ENSMUSG00000111661.2	ENSMUST00000213332.2	481	1	-25	-40	-25	40	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAACAAA	NA	False	NA	NA	False	AATAAA	-20	NA	20466599	20467145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20466600_20467100
ES_00059961	chr9	+	2871	7	FSM	ENSMUSG00000058192.17	ENSMUST00000140668.8	2661	7	0	-210	0	210	multi-exon	FALSE	canonical	2	6	junction_4	12.0369800568452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACGGCCCGAGGATCCAG	42	False	NA	NA	False	NA	NA	NA	20492820	20506700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20500752_20500855_20502108_20502181_20502634_20502718_20504456
ES_00059962	chr9	+	2214	1	FSM	ENSMUSG00000062470.11	ENSMUST00000215582.2	3040	1	55	771	32	-771	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCGGGATTAAAGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	20518808	20521022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20518800_20521000
ES_00059963	chr9	+	385	4	NIC	ENSMUSG00000084786.10	novel	489	6	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	532.355770764877	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556117	20558073	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_20556190_20556488_20556556_20556701_20556786_20557911
ES_00059964	chr9	+	501	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	68.2658203072535	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556336	20558071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
ES_00059965	chr9	+	3224	7	FSM	ENSMUSG00000038884.15	ENSMUST00000175820.8	3210	7	-14	0	2	0	multi-exon	FALSE	canonical	3	59	junction_5	23.9704679414761	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779939	20785603	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20780233_20780625_20780750_20780899_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ES_00059968	chr9	+	1904	9	FSM	ENSMUSG00000004100.13	ENSMUST00000147780.2	1834	9	-70	0	-35	0	multi-exon	FALSE	canonical	3	766	junction_7	71.605582010064	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799510	20803474	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
ES_00059970	chr9	+	554	4	FSM	ENSMUSG00000002820.7	ENSMUST00000217591.2	697	4	143	0	143	0	multi-exon	FALSE	canonical	3	483	junction_1	33.2298393348843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCACTGTACTTCATTGG	NA	False	NA	NA	False	NA	NA	NA	21179516	21183814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21179824_21179900_21179966_21182015_21182147_21183763
ES_00059971	chr9	+	1322	9	FSM	ENSMUSG00000057193.9	ENSMUST00000213758.2	1315	9	-7	0	2	0	multi-exon	FALSE	canonical	3	79	junction_1	52.957382629809	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAAAT	6623	False	NA	NA	False	NA	NA	NA	21232036	21254871	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430
ES_00059972	chr9	+	4124	22	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	13	0	intron_retention	FALSE	canonical	3	72	junction_21	38.6895897334347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	5749	False	NA	16	True	AATAAA	-16	NA	21249136	21266321	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
ES_00059973	chr9	+	3563	23	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_22	56.4293605073877	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	5760	False	NA	19	True	AATAAA	-19	NA	21249147	21266324	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264425_21264977
ES_00059975	chr9	+	3563	20	NIC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	72	junction_2	529.673719668514	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCCTGTCTCAGGCCT	NA	False	NA	114	True	AATAAA	-12	NA	21279166	21316655	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21279396_21298995_21299094_21299804_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ES_00059976	chr9	+	5990	20	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_18	564.305368108841	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279298	21316656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747_21314687_21315355_21315488_21315991
ES_00059977	chr9	+	3306	20	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	542.146109856128	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279298	21316656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
ES_00059979	chr9	+	3555	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	-53	0	-16	0	multi-exon	TRUE	canonical	2	327	junction_20	112.703715555433	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGTGGGCCTTTTGT	5826	False	NA	20	True	AATAAA	-30	NA	21336187	21418436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ES_00059981	chr9	+	5509	34	NNC	ENSMUSG00000032187.17	novel	5405	34	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	156.387829934745	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1237	False	NA	22	True	AATAAA	-19	NA	21527464	21614662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590443_21597307_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00059983	chr9	+	1816	2	NNC	ENSMUSG00000051238.7	novel	1838	2	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATTGGACTCTGGTGGT	NA	False	NA	5	True	NA	NA	NA	21867066	21869557	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21867301_21867975
ES_00059984	chr9	+	2224	18	NIC	ENSMUSG00000003402.15	novel	2228	18	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	210.71322284977	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914126	21925518	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ES_00059985	chr9	+	202	2	Antisense	novelGene_ENSMUSG00000066839.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	314	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATTCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21979934	21987229	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_21979986_21987078
ES_00059986	chr9	+	268	1	FSM	ENSMUSG00000111446.2	ENSMUST00000214545.2	260	1	-8	0	-8	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAGGGGTCACTGGAGG	365	False	NA	NA	False	NA	NA	NA	22003800	22004068	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22003800_22004100
ES_00059989	chr9	+	1444	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	-19	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	52.9694251431899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	778	False	NA	14	True	NA	NA	NA	22137047	22154650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
ES_00059990	chr9	+	1014	2	FSM	ENSMUSG00000111205.2	ENSMUST00000216780.2	1037	2	21	2	21	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTCTGGTATGACTCT	NA	False	NA	NA	False	NA	NA	NA	22171418	22174583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22171721_22173871
ES_00059991	chr9	+	1116	2	ISM	ENSMUSG00000036411.11	ENSMUST00000058868.9	2223	7	19	19671	-16	-10095	5prime_fragment	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGCTGTGTTCTCTGAC	NA	False	NA	NA	False	AATAAA	-12	NA	22322827	22336306	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_22323046_22335408
ES_00059992	chr9	+	1146	4	ISM	ENSMUSG00000036411.11	ENSMUST00000213133.2	1382	5	1409	3	1409	-3	3prime_fragment	FALSE	canonical	3	11	junction_1	0.471404520791032	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTTGTTCAGTTCTT	NA	False	NA	NA	False	ATTAAA	-11	NA	22342969	22355974	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_22343105_22346390_22346697_22351162_22351261_22355367
ES_00059994	chr9	+	2315	1	FSM	ENSMUSG00000001833.18	ENSMUST00000214360.2	2251	1	1003	-1067	1003	15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGTAGTTGGGAAGAAA	NA	False	NA	37	True	AATAAA	-37	NA	25217567	25219882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_25217600_25219900
ES_00059995	chr9	+	1117	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	-10	0	0	0	multi-exon	FALSE	canonical	3	218	junction_6	186.06510210736	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911005	26918632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ES_00059996	chr9	+	1976	12	ISM	ENSMUSG00000034275.19	ENSMUST00000115247.8	2857	15	-16	5744	8	-5744	5prime_fragment	FALSE	canonical	2	7	junction_9	5.76968423731725	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGTGGGCCCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	27210507	27235687	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912_27234054_27234139_27234257_27234504_27234656_27235472
ES_00059997	chr9	+	2361	5	FSM	ENSMUSG00000047412.17	ENSMUST00000214585.2	2350	5	-11	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	129.588531514174	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGCTAAGAGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	30964591	30980887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_30965610_30973336_30973422_30975528_30975639_30977954_30978256_30980040
ES_00059998	chr9	+	2303	1	FSM	ENSMUSG00000081343.2	ENSMUST00000119589.2	793	1	-1448	-62	-1448	62	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATCTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31004049	31006352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_31004000_31006400
ES_00059999	chr9	+	4737	22	NNC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	12	8	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_21	8.75776299624583	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTCTTGTGCATGT	NA	False	NA	NA	False	AATAAA	-18	NA	31191856	31293027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957_31241162_31246612_31246686_31248600_31248719_31251625_31251756_31252537_31252781_31258088_31258437_31260407_31260564_31264582_31264763_31265770_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31291755
ES_00060001	chr9	+	10369	22	FSM	ENSMUSG00000041444.15	ENSMUST00000174641.8	13568	22	69	3130	69	1071	multi-exon	FALSE	canonical	1	1	junction_1	8.76863095864394	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGAGAAAGGGGACCTTA	NA	False	NA	NA	False	NA	NA	NA	32027500	32176612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_32027548_32040865_32040975_32063217_32063310_32064335_32064421_32081385_32081473_32093137_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479_32119562_32150557_32150708_32156447_32156551_32157213_32157359_32157742_32157826_32158403_32158512_32158781_32158928_32159675_32159872_32161937_32162084_32165362_32165435_32166469_32167355_32168008_32168995_32170197
ES_00060004	chr9	+	614	5	FSM	ENSMUSG00000038119.16	ENSMUST00000151682.8	652	5	38	0	38	0	multi-exon	TRUE	canonical	1	1	junction_1	4.65698400254929	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCCTCTAAGGATAAGG	NA	False	NA	NA	False	NA	NA	NA	35332461	35366661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_35332480_35363340_35363474_35363956_35364230_35365598_35365746_35366618
ES_00060005	chr9	+	7586	20	FSM	ENSMUSG00000038119.16	ENSMUST00000119129.10	7503	20	-92	9	-88	-8	multi-exon	FALSE	canonical	1	3	junction_6	3.6977195937369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGTGCAGTCGCCTGTGA	NA	False	NA	9	True	ATTAAA	-15	NA	35332761	35418939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_35333112_35363340_35363474_35363956_35364230_35365598_35365746_35366618_35366763_35367743_35368032_35368692_35368963_35375170_35375525_35381160_35381451_35382280_35382456_35384729_35384862_35388172_35388377_35389246_35389429_35389879_35389986_35394393_35394517_35398045_35398268_35400270_35400537_35403140_35403221_35414455_35414716_35415352
ES_00060008	chr9	+	589	1	FSM	ENSMUSG00000111738.2	ENSMUST00000215832.2	589	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTTATTTGGCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	37186555	37187144	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37186600_37187100
ES_00060009	chr9	+	279	3	FSM	ENSMUSG00000001946.15	ENSMUST00000131832.2	627	3	348	0	348	0	multi-exon	FALSE	canonical	1	1	junction_1	1	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGACCAAAGGCTCAGAC	NA	False	NA	NA	False	NA	NA	NA	37447893	37448788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37448017_37448301_37448429_37448759
ES_00060010	chr9	+	648	4	NNC	ENSMUSG00000001942.9	novel	1498	7	NA	NA	-4	-4081	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	21.6024689946929	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTACTTTTATATGTC	NA	False	NA	NA	False	TATAAA	-1	NA	37525118	37534947	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_37525223_37528095_37528258_37534194_37534371_37534741
ES_00060011	chr9	+	362	1	Intergenic	novelGene_4110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTGACTACGCGCTAAA	NA	False	NA	NA	False	NA	NA	NA	40097521	40097883	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_40097500_40097900
ES_00060013	chr9	+	236	2	Intergenic	novelGene_4118	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCCTCTGGGCCCACC	NA	False	NA	NA	False	NA	NA	NA	43965016	43981194	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_43965208_43981149
ES_00060014	chr9	+	711	1	FSM	ENSMUSG00000110966.2	ENSMUST00000214044.2	487	1	38	-262	38	262	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTATAATTAGAAGCTT	2895	False	NA	NA	False	AATAAA	-19	NA	44092009	44092720	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44092000_44092700
ES_00060015	chr9	+	2050	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGATCACAGTGCTCC	3802	False	NA	NA	False	AATAAA	-26	NA	44238169	44245191	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ES_00060016	chr9	+	4925	17	FSM	ENSMUSG00000032115.15	ENSMUST00000161537.8	4925	17	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_1	108.173182905931	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGACACCCCAGATGTGG	NA	False	NA	NA	False	AAAAAG	-7	NA	44290853	44302033	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44290893_44291809_44291908_44292112_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296603_44296863_44297003_44298328_44298627_44298984_44299171_44299302_44299476_44299574_44299902_44300088_44300223_44300334_44300420_44300527
ES_00060017	chr9	+	2085	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	43	0	43	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	3348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTCAGTGGCTCA	NA	False	NA	NA	False	AATAAA	-13	NA	44308191	44314257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ES_00060018	chr9	+	2086	8	FSM	ENSMUSG00000032114.10	ENSMUST00000165839.3	2086	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	6.22044030202207	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCAGTGGCTCATCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	44309472	44314263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ES_00060019	chr9	+	645	6	NNC	ENSMUSG00000009927.10	novel	1280	5	NA	NA	86	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	4995.63948258879	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318521	44321486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_44318548_44318858_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ES_00060021	chr9	+	8368	8	FSM	ENSMUSG00000063382.7_ENSMUSG00000060380.4	ENSMUST00000220303.2	5760	8	-1163	-1445	-1163	-29	multi-exon	FALSE	canonical	2	12	junction_1	3.98978286964827	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGCCTTTTTATTAAAAAG	755	False	NA	-25	True	NA	NA	NA	44392958	44423164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44394784_44412041_44412428_44413098_44413219_44416349_44416561_44416712_44416798_44416880_44419168_44419449_44419732_44419992
ES_00060022	chr9	+	836	4	FSM	ENSMUSG00000063382.7	ENSMUST00000217898.2	836	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1.69967317119759	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGCCCCCCTGCCCCA	1959	False	NA	NA	False	NA	NA	NA	44394162	44412097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44394784_44400951_44401009_44410744_44410847_44412041
ES_00060023	chr9	+	200	1	FSM	ENSMUSG00000111378.2	ENSMUST00000214422.2	3254	1	2423	631	2404	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACCCTTTTATATGCAG	6080	False	NA	NA	False	NA	NA	NA	44493327	44493527	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44493300_44493500
ES_00060025	chr9	+	305	1	FSM	ENSMUSG00000110773.2	ENSMUST00000217585.2	536	1	-81	312	-81	-312	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGCCTTAAAAAAATAAAATC	NA	False	NA	NA	False	NA	NA	NA	44792944	44793249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44792900_44793200
ES_00060029	chr9	+	3893	18	FSM	ENSMUSG00000035382.10	ENSMUST00000215189.2	3893	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	14.204390373485	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCACCACTCCCAGTATTC	NA	False	NA	NA	False	AATAAA	-27	NA	45817866	45841024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837215_45837366_45838031_45838127_45838334_45838417_45838872_45838967_45839184_45839303_45839808
ES_00060036	chr9	+	5740	24	NNC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	-43	1470	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_8	163.90230618736	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTGTGAGAAAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	48896631	48955287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922565_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ES_00060037	chr9	+	364	2	FSM	ENSMUSG00000032267.9	ENSMUST00000216607.2	379	2	-10	25	0	-25	multi-exon	FALSE	canonical	3	897	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTAGTTTCTTCAACAT	NA	False	NA	NA	False	NA	NA	NA	48896674	48911851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_48896838_48911650
ES_00060038	chr9	+	4109	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896713	48953810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ES_00060042	chr9	+	1275	6	FSM	ENSMUSG00000000167.15	ENSMUST00000000171.15	1256	6	-20	1	-20	-1	multi-exon	FALSE	canonical	1	1	junction_3	2.03960780543711	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTATTTGGTGTTTTC	NA	False	NA	NA	False	AATAAA	-36	NA	50528600	50536296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_50528899_50529745_50529950_50531054_50531179_50532244_50532491_50532920_50533187_50536159
ES_00060043	chr9	+	473	1	FSM	ENSMUSG00000111693.2	ENSMUST00000213563.2	492	1	-1	20	-1	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGGTGGTGGACCTCATG	NA	False	NA	NA	False	AATACA	-10	NA	53075486	53075959	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_53075500_53076000
ES_00060044	chr9	+	224	3	FSM	ENSMUSG00000034584.4	ENSMUST00000132410.2	2315	3	348	1743	243	-1743	multi-exon	FALSE	canonical	3	4	junction_1	1	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCCGTGCATCAGCGC	NA	False	NA	NA	False	NA	NA	NA	53252731	53278512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_53252771_53264453_53264503_53278376
ES_00060045	chr9	+	6146	10	NNC	ENSMUSG00000033054.8	novel	554	3	NA	NA	-8061	1222	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_4	46.7998100660913	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATATAGCTTAATTGAT	NA	False	NA	7	True	AATAAA	-20	NA	53466772	53486864	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_53466820_53469424_53469522_53470381_53470508_53473341_53474284_53474454_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
ES_00060046	chr9	+	1812	12	FSM	ENSMUSG00000032279.12	ENSMUST00000215273.2	1812	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	727.622881616047	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_54493828_54497141_54497205_54499444_54499540_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ES_00060047	chr9	+	7242	17	NIC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	-13791	0	intron_retention	FALSE	canonical	3	193	junction_1	31.4322187412852	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	NA	False	NA	14	True	AATAAA	-19	NA	54790965	54819814	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ES_00060049	chr9	+	200	2	Intergenic	novelGene_4142	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	505	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	55024344	55039727	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_55024398_55039580
ES_00060050	chr9	+	2093	13	FSM	ENSMUSG00000032307.17	ENSMUST00000122441.2	2081	13	-12	0	-12	0	multi-exon	FALSE	canonical	2	4	junction_1	238.508371038745	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTATGAAAGATACCTA	NA	False	NA	NA	False	AATAAA	-39	NA	55057354	55114092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_55057686_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
ES_00060051	chr9	+	993	3	FSM	ENSMUSG00000032307.17	ENSMUST00000148468.2	993	3	0	0	0	0	multi-exon	FALSE	canonical	3	789	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGTACACACAATAGCCA	NA	False	NA	NA	False	NA	NA	NA	55102128	55113494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_55102804_55110984_55111052_55113243
ES_00060052	chr9	+	3750	10	NNC	ENSMUSG00000032329.5	novel	3778	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	67.6052448838289	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTGACCAGTTTTGCT	NA	False	NA	11	True	ATTAAA	-17	NA	56325927	56404220	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401809
ES_00060055	chr9	+	4979	22	NIC	ENSMUSG00000042557.15	novel	4899	21	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	80.3294520190322	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56979319	57035648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_56979348_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00060056	chr9	+	4965	21	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	72.8316380428176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56979378	57035648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56979501_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00060057	chr9	+	5602	22	NNC	ENSMUSG00000042557.15	novel	4899	21	NA	NA	-1585	131	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	84.1134909814078	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCAGTGGGATGGCTCC	NA	False	NA	NA	False	AATAAA	-38	NA	56981036	57035781	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56981555_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00060061	chr9	+	1378	10	FSM	ENSMUSG00000032295.16	ENSMUST00000159711.8	1378	10	0	0	0	0	multi-exon	FALSE	canonical	2	160	junction_1	46.6280263308042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTGCTGTTTCTCA	NA	False	NA	23	True	AATAAA	-24	NA	57046783	57049497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
ES_00060062	chr9	+	1067	7	FSM	ENSMUSG00000032295.16	ENSMUST00000162634.8	1067	7	0	0	0	0	multi-exon	FALSE	canonical	2	212	junction_5	31.1524031532436	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGGTGCCTTGCTGT	NA	False	NA	17	True	AATAAA	-18	NA	57047561	57049491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
ES_00060063	chr9	+	923	5	FSM	ENSMUSG00000032295.16	ENSMUST00000160280.2	857	5	-72	6	-72	0	multi-exon	FALSE	canonical	3	247	junction_3	21.6491916708223	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGGTGCCTTGCTGT	NA	False	NA	17	True	AATAAA	-18	NA	57047894	57049491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57048063_57048384_57048495_57048589_57048670_57048847_57049200_57049278
ES_00060065	chr9	+	1818	4	FSM	ENSMUSG00000000088.8	ENSMUST00000213678.2	1818	4	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_3	735.670820106082	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	372	False	NA	22	True	AATAAA	-22	NA	57428556	57439709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57428699_57436238_57437646_57438951_57439076_57439564
ES_00060066	chr9	+	720	6	FSM	ENSMUSG00000040188.11	ENSMUST00000216986.2	697	6	-23	0	-8	0	multi-exon	TRUE	canonical	3	4	junction_3	124.374595476729	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCCAGGGTGCATTG	NA	False	NA	NA	False	NA	NA	NA	57468217	57488195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57485556_57485686_57486715_57486834_57488066
ES_00060068	chr9	+	2788	16	NNC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	24	-10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	12.7843654515975	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATACTTATGCATTTCTT	NA	False	NA	23	True	ATTAAA	-7	NA	57496758	57503506	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_57496970_57497606_57497748_57497943_57498065_57498500_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
ES_00060069	chr9	+	750	2	FSM	ENSMUSG00000032308.10	ENSMUST00000213530.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCACAGGCAGTAAGCAG	NA	False	NA	NA	False	NA	NA	NA	57499302	57500245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_57499421_57499613
ES_00060073	chr9	+	4418	8	NNC	ENSMUSG00000032333.7	novel	2236	8	NA	NA	-657	1663	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	155.054565773946	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTCCCGAGTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	58161246	58171466	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928_58170481_58170723
ES_00060076	chr9	+	2729	21	NIC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-15	0	intron_retention	FALSE	canonical	3	13	junction_1	12.9541499142167	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATATGATCACTGTGGT	NA	False	NA	24	True	AATAAA	-18	NA	59524551	59557563	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_59524692_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801
ES_00060077	chr9	+	2484	23	FSM	ENSMUSG00000025237.17	ENSMUST00000216351.2	2484	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	14.9016056597828	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524643	59557550	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ES_00060081	chr9	+	3509	13	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	40	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	11.3431330181157	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGGTGTAGAAGTT	1676	False	NA	NA	False	AATAAA	-18	NA	59587466	59626155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625156_59625295
ES_00060082	chr9	+	3416	13	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	40	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	12.3521815437148	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGGTGTAGAAGTT	1676	False	NA	NA	False	AATAAA	-18	NA	59587466	59626155	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619463_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625128_59625393
ES_00060083	chr9	+	11985	42	FSM	ENSMUSG00000039585.16	ENSMUST00000128341.2	11985	42	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_26	16.0855091618831	8406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGGTTTGTTTTCTG	555	False	NA	12	True	ATTAAA	-24	NA	59658178	59836149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59658629_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59697318_59697376_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471_59739592_59750345_59750422_59762648_59762796_59764089_59764130_59767362_59767486_59768707_59768789_59771198_59771310_59772849_59772973_59775393_59775544_59776756_59777077_59777718_59779315_59781884_59781967_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ES_00060084	chr9	+	12252	44	FSM	ENSMUSG00000039585.16	ENSMUST00000136740.8	12252	44	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_41	17.7374335653783	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGGTTTGTTTTCTG	555	False	NA	12	True	ATTAAA	-24	NA	59658178	59836149	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_59658629_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59697318_59697376_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471_59739592_59750345_59750422_59762648_59762796_59764089_59764130_59767362_59767486_59768707_59768789_59771198_59771310_59772849_59772973_59775393_59775544_59776756_59777077_59777718_59779315_59781884_59781967_59782484_59782698_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59819819_59819874_59829005_59829209_59830903_59831026_59831853
ES_00060085	chr9	+	1367	3	FSM	ENSMUSG00000034839.6	ENSMUST00000038407.6	2440	3	85	988	85	-988	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCGAAAGTGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	60620356	60645096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_60620689_60631429_60631641_60644272
ES_00060090	chr9	+	3962	19	FSM	ENSMUSG00000032280.17	ENSMUST00000159630.8	4065	19	103	0	-34	0	multi-exon	FALSE	canonical	3	31	junction_5	48.9060891459904	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCTGCTGGTGGGCTCTC	NA	False	NA	10	True	ATTAAA	-21	NA	61280919	61325362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309137_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ES_00060092	chr9	+	2077	7	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	26	-7	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_5	191.543511157822	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGAGATGGCTTCCTTT	NA	False	NA	18	True	AATAAA	-18	NA	62248636	62286087	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284584_62284646_62284835
ES_00060093	chr9	+	640	5	FSM	ENSMUSG00000032249.15	ENSMUST00000128636.8	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	236.291133985175	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAGGAAGAGGATGTGAG	NA	False	NA	34	True	NA	NA	NA	62249183	62282000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_62249293_62279001_62279152_62279343_62279467_62280766_62280960_62281935
ES_00060096	chr9	+	3659	25	FSM	ENSMUSG00000036466.18	ENSMUST00000068967.11	6680	25	-69	3090	-9	182	multi-exon	FALSE	canonical	2	5	junction_22	6.84348838921594	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCCACCTTGCTTACAAA	NA	False	NA	NA	False	NA	NA	NA	64292898	64613397	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64613008
ES_00060097	chr9	+	1174	8	FSM	ENSMUSG00000036466.18	ENSMUST00000148449.8	2942	8	0	1768	0	-1768	multi-exon	FALSE	canonical	2	11	junction_5	7.22523920937245	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTCCACCAGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	64292964	64555359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096
ES_00060098	chr9	+	3701	21	ISM	ENSMUSG00000036466.18	ENSMUST00000118485.8	3944	23	79	6330	19	-15	5prime_fragment	FALSE	canonical	2	2	junction_20	7.43370701601832	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATCAATGTGATGTCT	NA	False	NA	NA	False	NA	NA	NA	64292986	64608242	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64607378
ES_00060101	chr9	+	4739	21	NNC	ENSMUSG00000032393.16	novel	4808	21	NA	NA	53	-20	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_10	29.4707906239381	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAACTTTCCTTCCCCTA	NA	False	NA	11	True	ATTAAA	-8	NA	64939748	64989913	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_64939906_64942156_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961806_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
ES_00060102	chr9	+	3142	21	FSM	ENSMUSG00000032393.16	ENSMUST00000167773.2	3142	21	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	28.8333140655042	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCTGCAGTTCATGGA	NA	False	NA	7	True	AGTAAA	-14	NA	64940003	64988272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64940209_64942156_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961802_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
ES_00060106	chr9	+	3375	13	NIC	ENSMUSG00000041064.15	novel	3309	13	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	35.8817502360183	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGTGCCTCCTGCCT	NA	False	NA	22	True	AATAAA	-12	NA	65494478	65503244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_65494581_65494893_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ES_00060107	chr9	+	1803	9	FSM	ENSMUSG00000032387.16	ENSMUST00000169003.8	1803	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_6	685.603919457145	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGATTTTTGCTTCTA	NA	False	NA	16	True	AATAAA	-16	NA	65536929	65567810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558942_65558987_65566416_65566487_65566719
ES_00060108	chr9	+	208	1	Intergenic	novelGene_4181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACCTGCAAATGGGGAA	NA	False	NA	NA	False	NA	NA	NA	65716773	65716981	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_65716800_65717000
ES_00060110	chr9	+	2096	2	FSM	ENSMUSG00000038664.17	ENSMUST00000144280.2	2457	2	3	358	3	-358	multi-exon	FALSE	canonical	3	10	junction_1	0	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGCAAAATACCTGTACAC	NA	False	NA	NA	False	NA	NA	NA	66257734	66280994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_66257904_66279067
ES_00060111	chr9	+	3960	4	FSM	ENSMUSG00000038664.17	ENSMUST00000140487.2	4781	4	0	821	0	-821	multi-exon	FALSE	canonical	3	10	junction_3	4.32049379893857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTATCTGATGAAATT	NA	False	NA	NA	False	NA	NA	NA	66349192	66358760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_66349362_66352734_66352975_66353366_66353451_66355293
ES_00060113	chr9	+	228	1	ISM	ENSMUSG00000038664.17	ENSMUST00000135600.2	3041	2	3145	593	-554	-593	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAAAGACA	NA	False	NA	NA	False	TATAAA	-19	NA	66406981	66407209	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_66407000_66407200
ES_00060114	chr9	+	2106	1	FSM	ENSMUSG00000074232.4	ENSMUST00000098612.3	2036	1	1894	-1964	1894	1964	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATTTTTAAGAACTTG	NA	False	NA	NA	False	AATATA	-1	NA	66706214	66708320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_66706200_66708300
ES_00060116	chr9	+	4533	31	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	103654	-2	-9738	2	3prime_fragment	FALSE	canonical	2	4	junction_6	4.83551674821029	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGGCTTGTTTTTAAT	NA	False	NA	8	True	ATTAAA	-16	NA	67851331	67902922	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_67851414_67852768_67852919_67853105_67853371_67855398_67855560_67856597_67856720_67857514_67857810_67858591_67858982_67860215_67860321_67861005_67861171_67861819_67861949_67862213_67862348_67862948_67863076_67864782_67865019_67868875_67869018_67870330_67870472_67871340_67871423_67871525_67871596_67872746_67872859_67872966_67873081_67874321_67874462_67876556_67876639_67879269_67879384_67880142_67880219_67880563_67880728_67880993_67881040_67883063_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
ES_00060117	chr9	+	3941	15	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	3	-44	combination_of_known_splicesites	FALSE	canonical	3	18	junction_11	31.7888441476707	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTGTCATTTCAGAAA	4706	False	NA	25	True	AATAAA	-19	NA	69305241	69340360	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ES_00060118	chr9	+	1386	13	NNC	ENSMUSG00000032231.15	novel	1447	13	NA	NA	-35	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.0228265182705	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCGTTGCCTTTGCTTTC	NA	False	NA	NA	False	AATAAA	-24	NA	69360962	69399076	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_69361024_69371742_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
ES_00060120	chr9	+	689	6	FSM	ENSMUSG00000011958.18	ENSMUST00000154772.8	676	6	-13	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	145.653561576777	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGAAAAGGGCGATGG	NA	False	NA	NA	False	NA	NA	NA	69896785	69906440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69905529_69905616_69906375
ES_00060121	chr9	+	621	4	FSM	ENSMUSG00000011958.18	ENSMUST00000143049.8	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	16.8720676464584	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGATGGCCCTTAACA	NA	False	NA	NA	False	NA	NA	NA	69904457	69909520	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_69904540_69906375_69906553_69908124_69908228_69909261
ES_00060123	chr9	+	4710	29	NNC	ENSMUSG00000032220.11	novel	4699	29	NA	NA	-1223	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	45.170580885694	90	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTTTCTTCATGACA	NA	False	NA	20	True	AATAAA	-20	NA	70113408	70307048	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_70113458_70114613_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003
ES_00060124	chr9	+	3377	20	NIC	ENSMUSG00000032212.11	novel	3691	21	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_6	70.7250930092244	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGCTAATGTATTGAGA	NA	False	NA	15	True	AATAAA	-16	NA	70449996	70499514	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ES_00060125	chr9	+	336	2	Intergenic	novelGene_4191	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTTTTGTCGTAAAAG	NA	False	NA	NA	False	NA	NA	NA	70456530	70458010	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_70456788_70457931
ES_00060126	chr9	+	1786	4	FSM	ENSMUSG00000032212.11	ENSMUST00000214834.2	1786	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	118.01224041975	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGATACTAAGAAAATAGA	NA	False	NA	NA	False	AAAAAG	-42	NA	70482689	70487512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_70484123_70486563_70486714_70487233_70487338_70487413
ES_00060128	chr9	+	508	1	FSM	ENSMUSG00000099253.2	ENSMUST00000184700.2	805	1	192	105	192	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCATTGGGAAGGCAAT	NA	False	NA	NA	False	NA	NA	NA	72036060	72036568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72036100_72036600
ES_00060129	chr9	+	2332	1	FSM	ENSMUSG00000038535.18	ENSMUST00000183545.2	2107	1	-72	-153	-72	153	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGAAACTTCATTAAG	NA	False	NA	NA	False	AATAAA	-34	NA	72214356	72216688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72214400_72216700
ES_00060131	chr9	+	534	1	FSM	ENSMUSG00000103388.2	ENSMUST00000192371.2	988	1	533	-79	533	79	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTTTCATTTAAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	72265041	72265575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72265000_72265600
ES_00060132	chr9	+	1542	7	FSM	ENSMUSG00000037674.16	ENSMUST00000184015.2	1554	7	0	12	0	0	multi-exon	FALSE	canonical	3	175	junction_3	16.2933183305987	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATAAAAAGAGCTTTG	1172	False	NA	60	True	AATAAA	-18	NA	72440016	72519756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
ES_00060133	chr9	+	5435	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	0	47181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.947650556986	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAACCAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	72569719	72704315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_72569895_72577232_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72657132_72704284
ES_00060135	chr9	+	208	2	Intergenic	novelGene_4196	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	166	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTCAGTTCCCAGGACC	7491	False	NA	NA	False	NA	NA	NA	72701544	72709181	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_72701598_72709026
ES_00060136	chr9	+	7610	3	FSM	ENSMUSG00000034910.6	ENSMUST00000038489.6	7916	3	0	306	0	-306	multi-exon	FALSE	canonical	2	7	junction_2	1	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCCTGCTTCTTATCAT	NA	False	NA	NA	False	TTTAAA	-10	NA	72832926	72859157	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72833243_72850201_72850288_72851949
ES_00060137	chr9	+	678	5	FSM	ENSMUSG00000034563.17	ENSMUST00000149551.2	664	5	-72	58	32	-58	multi-exon	FALSE	canonical	3	172	junction_3	14.396180048888	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTCTTAAATAATTTTTC	NA	False	NA	NA	False	NA	NA	NA	72892817	72909231	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958
ES_00060139	chr9	+	2372	1	FSM	ENSMUSG00000032202.12	ENSMUST00000184032.2	1583	1	425	-1214	425	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGGTGAATATTTCAAA	6792	False	NA	NA	False	NA	NA	NA	73002539	73004911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_73002500_73004900
ES_00060142	chr9	+	1202	3	FSM	ENSMUSG00000032184.6	ENSMUST00000213292.2	1241	3	39	0	39	0	multi-exon	FALSE	canonical	0	0	junction_1	30.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGAGCCTTCATTTCTC	NA	False	NA	2	True	AATAAA	-12	NA	75533558	75545048	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_75533874_75542667_75543000_75544493
ES_00060143	chr9	+	3609	9	FSM	ENSMUSG00000007908.15	ENSMUST00000008052.13	3737	9	128	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_1	1.05326872164704	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGCTCTTAATTTC	NA	False	NA	NA	False	AATAAA	-17	NA	75922264	76043632	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_75922465_75963452_75963534_75963733_75963842_75979908_75980005_75981949_75982099_75988672_75988737_75991584_75991774_76037593_76037720_76041036
ES_00060144	chr9	+	200	1	Intergenic	novelGene_4206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGGCTTTAGAAAACATT	NA	False	NA	NA	False	NA	NA	NA	75990623	75990823	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_75990600_75990800
ES_00060145	chr9	+	621	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7107	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76219751	76228128	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_76219851_76226917_76227020_76227708
ES_00060148	chr9	+	355	2	FSM	ENSMUSG00000032349.14	ENSMUST00000148398.2	685	2	0	330	0	-330	multi-exon	FALSE	canonical	3	609	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCATCCTTCTGCCGGC	NA	False	NA	NA	False	NA	NA	NA	77824715	77864684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_77824809_77864422
ES_00060149	chr9	+	828	6	FSM	ENSMUSG00000032349.14	ENSMUST00000133757.8	638	6	-58	-132	-58	132	multi-exon	FALSE	canonical	2	13	junction_1	231.015497315656	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCAGGCCGTCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	77829155	77887282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_77829304_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106
ES_00060150	chr9	+	592	1	FSM	ENSMUSG00000111596.2	ENSMUST00000217247.2	587	1	-5	0	-5	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAGAGAGATACACAGAG	NA	False	NA	NA	False	ATTAAA	-8	NA	77976127	77976719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_77976100_77976700
ES_00060152	chr9	+	2641	12	FSM	ENSMUSG00000009828.16	ENSMUST00000117330.8	2698	12	-16	73	0	-73	multi-exon	FALSE	canonical	3	95	junction_8	8.82239824219025	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCAGTGAGCTTTGCAT	NA	False	NA	NA	False	AAAAAG	-10	NA	78020565	78072622	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812
ES_00060153	chr9	+	289	1	Intergenic	novelGene_4208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCGTTTGAATCCTTGT	NA	False	NA	NA	False	ATTAAA	-30	NA	78153639	78153928	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78153600_78153900
ES_00060154	chr9	+	632	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	-50	504	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	21225.5	250	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGTGTCCGTTTGAATC	3288	False	NA	NA	False	ATTAAA	-43	NA	78179229	78180369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179656_78180082
ES_00060155	chr9	+	633	4	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	2	504	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_2	19529.3251177698	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGTGTCCGTTTGAATC	3340	False	NA	NA	False	ATTAAA	-43	NA	78179281	78180369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179660_78179813_78179866_78180085
ES_00060156	chr9	+	579	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	2	504	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	21225.5	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGTGTCCGTTTGAATC	3340	False	NA	NA	False	ATTAAA	-43	NA	78179281	78180369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179656_78180083
ES_00060157	chr9	+	580	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	2	504	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	21225.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGTGTCCGTTTGAATC	3340	False	NA	NA	False	ATTAAA	-43	NA	78179281	78180369	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179659_78180085
ES_00060159	chr9	+	2258	12	NNC	ENSMUSG00000032342.14	novel	2366	12	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	20.7332527258759	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTTAGGTGATTTTAC	NA	False	NA	18	True	AATAAA	-17	NA	78355499	78381433	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368877_78372165_78372285_78377912_78378074_78381071
ES_00060160	chr9	+	203	2	Intergenic	novelGene_4211	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	648	junction_1	0	38	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGATTTGTCAAGCCAG	1118	False	NA	NA	False	NA	NA	NA	78367178	78378558	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78367235_78378411
ES_00060162	chr9	+	338	1	Intergenic	novelGene_4213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGACCACACACACAC	1791	False	NA	NA	False	NA	NA	NA	78397665	78398003	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78397700_78398000
ES_00060165	chr9	+	3814	20	NIC	ENSMUSG00000034252.15	novel	5111	23	NA	NA	21	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	105.324981844546	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAATTTGATATTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	79974401	80051453	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_79974855_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ES_00060169	chr9	+	2663	1	FSM	ENSMUSG00000033577.19	ENSMUST00000183377.2	2991	1	-26	354	-19	-354	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTTATTCAATTAGCT	4835	False	NA	NA	False	AATACA	-13	NA	80072293	80074956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_80072300_80075000
ES_00060171	chr9	+	807	3	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	3	1420	junction_2	627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559589	81560730	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_81560062_81560354_81560470_81560510
ES_00060172	chr9	+	1670	9	FSM	ENSMUSG00000038379.16	ENSMUST00000186277.2	999	9	-77	-594	-25	594	multi-exon	FALSE	canonical	3	14	junction_8	75.5950353859299	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTAATTGGCTGCCGAATG	NA	False	NA	NA	False	NA	NA	NA	83716716	83727074	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83726402
ES_00060173	chr9	+	1352	1	FSM	ENSMUSG00000103715.2	ENSMUST00000195799.2	1352	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTTTTATCTGTCTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	85631130	85632482	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_85631100_85632500
ES_00060176	chr9	+	3431	6	NIC	ENSMUSG00000032425.16	novel	3472	6	NA	NA	4	-26	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	4.17612260356422	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATTTTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88430141	88453088	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_88430562_88434714_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
ES_00060177	chr9	+	871	1	FSM	ENSMUSG00000096647.3	ENSMUST00000178436.3	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAAAAGACATGGCTTTC	NA	False	NA	NA	False	ACTAAA	-12	NA	90000989	90001860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_90001000_90001900
ES_00060178	chr9	+	4849	23	ISM	ENSMUSG00000032363.16	ENSMUST00000113059.8	5379	24	8686	3	8529	0	3prime_fragment	FALSE	canonical	3	12	junction_17	7.25224388188332	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGTGGTTTGGCCTTGT	NA	False	NA	2	True	CATAAA	-16	NA	90053807	90082150	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ES_00060182	chr9	+	3357	21	FSM	ENSMUSG00000032410.14	ENSMUST00000189612.7	3357	21	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_14	7.51731334986111	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGATCCACCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	95836884	95882447	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466
ES_00060186	chr9	+	4467	17	FSM	ENSMUSG00000041440.19	ENSMUST00000122383.3	4455	17	-12	0	1	0	multi-exon	FALSE	canonical	1	1	junction_16	18.0831413200251	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCATATGCATATTT	NA	False	NA	17	True	AATAAA	-27	NA	96001415	96066661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973_96061060_96063824
ES_00060187	chr9	+	1764	14	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	12	2	combination_of_known_junctions	FALSE	canonical	3	86	junction_8	113.611608707632	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078339	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060188	chr9	+	2520	12	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	-11	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	141.97188640335	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCTTATACATGTTC	NA	False	NA	-83	True	NA	NA	NA	96078356	96200947	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060189	chr9	+	2557	13	NIC	ENSMUSG00000032411.16	novel	2646	14	NA	NA	-3	-11	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	135.467990274045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCTTATACATGTTC	NA	False	NA	-83	True	NA	NA	NA	96078366	96200947	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060190	chr9	+	2534	12	NIC	ENSMUSG00000032411.16	novel	7354	13	NA	NA	7	-11	combination_of_known_junctions	FALSE	canonical	3	58	junction_3	115.371408864896	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCTTATACATGTTC	NA	False	NA	-83	True	NA	NA	NA	96078376	96200947	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060192	chr9	+	7406	16	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	34	junction_3	133.535613227333	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTCATAATTGGTG	NA	False	NA	NA	False	AATAAA	-14	NA	96078432	96205699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96078614_96084183_96084242_96093185_96093221_96093243_96093270_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060196	chr9	+	1724	2	NNC	ENSMUSG00000084911.2	novel	3207	2	NA	NA	0	-1483	at_least_one_novel_splicesite	TRUE	canonical	3	200	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACATCAGCTAGGTGTCT	NA	False	NA	NA	False	AGTAAA	-43	NA	96967378	96969180	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96969000_96969077
ES_00060197	chr9	+	3207	2	FSM	ENSMUSG00000084911.2	ENSMUST00000125071.2	3207	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAGAGACTAATGCAT	NA	False	NA	NA	False	NA	NA	NA	96967378	96970663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_96968961_96969038
ES_00060199	chr9	+	1538	1	FSM	ENSMUSG00000102861.2	ENSMUST00000195540.2	1256	1	-252	-30	-252	30	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTATTAACTACAATATATT	NA	False	NA	NA	False	NA	NA	NA	98472295	98473833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_98472300_98473800
ES_00060201	chr9	+	3414	1	FSM	ENSMUSG00000063058.3	ENSMUST00000071302.3	881	1	55	-2588	55	2588	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACAAGACTCTAGTCTTT	NA	False	NA	NA	False	AATAAA	-23	NA	98738601	98742015	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_98738600_98742000
ES_00060202	chr9	+	1712	15	NIC	ENSMUSG00000056267.15	novel	2120	16	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	91.341476373674	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGGAGTCTTTCCCCGG	NA	False	NA	NA	False	NA	NA	NA	99125467	99178404	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328
ES_00060204	chr9	+	2338	4	NIC	ENSMUSG00000056267.15	novel	1768	6	NA	NA	5	0	intron_retention	FALSE	canonical	3	26	junction_2	142.682242140437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125499	99146981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_99125544_99128319_99128420_99144598_99144690_99144878
ES_00060205	chr9	+	1744	6	NNC	ENSMUSG00000056267.15	novel	1768	6	NA	NA	2	-27	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	144.271133633863	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTCAAATAAACCCTTTC	NA	False	NA	-20	True	NA	NA	NA	99125507	99146954	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_99125544_99128319_99128420_99136307_99136431_99144601_99144690_99144878_99145003_99145681
ES_00060207	chr9	+	2905	18	NIC	ENSMUSG00000056267.15	novel	1138	8	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	89.442680413686	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125589	99182457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_99125938_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ES_00060210	chr9	+	842	4	FSM	ENSMUSG00000032469.13	ENSMUST00000139796.8	842	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_2	117.952909624515	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCCAGCAAGTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	99462254	99465891	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_99462417_99464074_99464156_99464443_99464516_99465364
ES_00060212	chr9	+	700	3	FSM	ENSMUSG00000037784.15	ENSMUST00000131095.8	736	3	36	0	-10	0	multi-exon	FALSE	canonical	2	4	junction_1	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGGAGCTGGGTCGCCA	NA	False	NA	NA	False	NA	NA	NA	99511584	99519849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_99511723_99514689_99514802_99519399
ES_00060213	chr9	+	4100	17	NIC	ENSMUSG00000037784.15	novel	4350	17	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.26634360823522	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCGTTCTTTGTTATT	NA	False	NA	NA	False	AATATA	-21	NA	99511584	99551309	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_99511723_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
ES_00060214	chr9	+	6253	34	NIC	ENSMUSG00000037286.16	novel	3857	26	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_1	68.4680054375402	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	14	True	AATAAA	-14	NA	100479745	100840597	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_100480163_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
ES_00060225	chr9	+	259	1	FSM	ENSMUSG00000104040.2	ENSMUST00000192580.2	1513	1	591	663	591	-663	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGCCGTCACGAGACCCT	NA	False	NA	NA	False	NA	NA	NA	104139894	104140153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_104139900_104140200
ES_00060226	chr9	+	2739	6	NIC	ENSMUSG00000032567.17	novel	2349	6	NA	NA	-27	0	intron_retention	FALSE	canonical	3	19	junction_1	19.6916225842362	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	AATACA	-16	NA	105272563	105282666	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_105273054_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
ES_00060227	chr9	+	4711	15	FSM	ENSMUSG00000032571.15	ENSMUST00000187573.7	4929	15	0	218	0	-218	multi-exon	FALSE	canonical	3	108	junction_1	14.1767271200632	3492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGAAGCGTTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	105520176	105556301	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307
ES_00060229	chr9	+	2301	1	FSM	ENSMUSG00000020257.14	ENSMUST00000191147.2	3045	1	-1	745	0	-745	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAACCATCTGTAACTAG	NA	False	NA	NA	False	NA	NA	NA	106048126	106050427	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106048100_106050400
ES_00060230	chr9	+	1242	10	FSM	ENSMUSG00000023345.18	ENSMUST00000191434.2	1242	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	133.805644938037	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCTGGGATTGGGTGC	9876	False	NA	22	True	AATAAA	-34	NA	106158578	106227091	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106158656_106160053_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106226880
ES_00060232	chr9	+	924	6	FSM	ENSMUSG00000023495.14	ENSMUST00000188396.2	924	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	149.273708334723	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTGTGGGAGGGGTT	9628	False	NA	NA	False	GGGGCT	-8	NA	106339068	106340894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339733_106339877_106340329
ES_00060233	chr9	+	1611	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ES_00060234	chr9	+	860	2	FSM	ENSMUSG00000041506.16	ENSMUST00000131618.2	860	2	0	0	0	0	multi-exon	FALSE	canonical	3	1473	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106361662	106362623	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106362350_106362450
ES_00060235	chr9	+	5625	25	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	63	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	84.0237131707472	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGCCTTTCCTTGTTTTC	NA	False	NA	9	True	AATAAA	-20	NA	106699135	106758184	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132_106757415_106757466
ES_00060236	chr9	+	5729	25	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	63	100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	100.428448478949	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGAGAACACCGCCTCC	NA	False	NA	NA	False	NA	NA	NA	106699135	106758291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757135_106757415_106757466
ES_00060237	chr9	+	277	2	Intergenic	novelGene_4244	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGGACAGCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	107035842	107071572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_107035905_107071357
ES_00060239	chr9	+	2539	6	FSM	ENSMUSG00000037977.7	ENSMUST00000042581.4	2599	6	56	4	56	-4	multi-exon	FALSE	canonical	1	2	junction_1	1.32664991614216	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGATTGGAGTCTGTGAC	NA	False	NA	NA	False	ATTAAA	-24	NA	107217856	107226887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107217988_107218509_107218617_107219405_107219789_107223344_107223371_107224016_107224165_107225143
ES_00060241	chr9	+	602	2	FSM	ENSMUSG00000010044.13	ENSMUST00000192445.2	611	2	9	0	9	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCATCAGCAAACTGGCA	NA	False	NA	NA	False	NA	NA	NA	107427696	107428418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107427819_107427938
ES_00060242	chr9	+	2139	5	NNC	ENSMUSG00000010047.13	novel	2062	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	94.3212595335749	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCTTCTTGTCTTTTT	NA	False	NA	11	True	ATTAAA	-13	NA	107445144	107449971	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_107445261_107446181_107446433_107447302_107448270_107448690_107448781_107449256
ES_00060244	chr9	+	2078	1	FSM	ENSMUSG00000010051.16	ENSMUST00000184695.2	2078	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	107456795	107458873	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107456800_107458900
ES_00060245	chr9	+	2054	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	0	0	0	0	multi-exon	TRUE	canonical	3	631	junction_10	36.8511872264653	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ES_00060247	chr9	+	1817	4	FSM	ENSMUSG00000032583.8	ENSMUST00000191906.6	2821	4	-11	1015	-11	-1015	multi-exon	FALSE	canonical	3	19	junction_2	7.07106781186548	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACTTCAGTACTCAT	NA	False	NA	NA	False	NA	NA	NA	107765338	107779318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393
ES_00060248	chr9	+	338	3	FSM	ENSMUSG00000032584.13	ENSMUST00000195113.2	345	3	7	0	7	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTCTGACATCAACGATA	NA	False	NA	NA	False	NA	NA	NA	107792208	107792927	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107792356_107792435_107792602_107792902
ES_00060252	chr9	+	4377	3	ISM	ENSMUSG00000032594.12	ENSMUST00000177158.2	1244	5	0	-2639	0	0	intron_retention	FALSE	canonical	3	292	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	2379	False	NA	17	True	AATAAA	-17	NA	107909271	107925981	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_107909409_107918103_107918286_107921923
ES_00060258	chr9	+	5580	33	NIC	ENSMUSG00000052911.10	novel	5629	33	NA	NA	17	-3	combination_of_known_junctions	TRUE	canonical	3	32	junction_1	36.5231091228554	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCTGTGTTGTCTGGCCT	9133	False	NA	16	True	AATAAA	-13	NA	108357096	108367726	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_108357169_108357256_108357343_108357476_108357650_108357736_108357873_108357954_108358029_108358432_108358622_108358702_108358767_108359006_108359210_108359299_108359421_108359706_108359896_108360079_108360260_108360369_108360483_108360728_108360809_108360886_108361020_108361209_108361369_108361444_108361573_108362385_108362513_108362696_108362890_108362965_108363110_108363313_108363546_108363620_108363785_108363862_108364088_108364174_108364393_108364491_108364589_108364674_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
ES_00060260	chr9	+	4520	27	FSM	ENSMUSG00000006676.17	ENSMUST00000085044.14	4520	27	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	64.3458319914706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108368043	108379516	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370762_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
ES_00060261	chr9	+	4267	26	NIC	ENSMUSG00000006676.17	novel	4791	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	84.9253790100462	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTCTCTCTGTCTAA	NA	False	NA	15	True	AATAAA	-17	NA	108369891	108378896	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370762_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
ES_00060265	chr9	+	2376	23	FSM	ENSMUSG00000032604.17	ENSMUST00000134939.9	2374	23	-2	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	117.634370153125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108385256	108393140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ES_00060269	chr9	+	702	5	FSM	ENSMUSG00000032604.17	ENSMUST00000137655.3	697	5	0	-5	0	0	multi-exon	FALSE	canonical	3	524	junction_3	39.5916657896583	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108391524	108393140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
ES_00060270	chr9	+	3331	11	FSM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	235.086983901704	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	1174	False	NA	64	True	NA	NA	NA	108394312	108437362	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108394440_108395901_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ES_00060281	chr9	+	3977	5	NNC	ENSMUSG00000032599.13	novel	1846	6	NA	NA	68	1	intron_retention	FALSE	canonical	2	4	junction_1	11.9869720947369	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGCTGCTGTCGTTCT	NA	False	NA	15	True	AATACA	-19	NA	108661131	108683532	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_108661532_108673262_108675693_108676440_108676617_108681740_108681917_108682737
ES_00060282	chr9	+	1149	3	ISM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	12226	-575	27	-69	3prime_fragment	FALSE	canonical	3	46	junction_2	10.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAATGTTTTTGTGTCTTT	NA	False	NA	NA	False	CATAAA	-21	NA	108673289	108675119	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_108673596_108673853_108673983_108674405
ES_00060283	chr9	+	3024	12	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	41	249	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	23.3436419573877	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGTTAAGTGTGTCTTC	3244	False	NA	NA	False	NA	NA	NA	108685660	108696292	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ES_00060294	chr9	+	1949	15	FSM	ENSMUSG00000032481.18	ENSMUST00000197480.5	1949	15	0	0	0	0	multi-exon	FALSE	canonical	3	1205	junction_8	68.1959960521952	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATAGCTTTTAATTATTT	2502	False	NA	NA	False	AATAAA	-23	NA	109961104	110013371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884
ES_00060298	chr9	+	8268	20	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3390	-9	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	31.2514597996988	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAATTAATCAGGTTTG	NA	False	NA	30	True	AATAAA	-31	NA	110358274	110447692	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_110358374_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ES_00060302	chr9	+	5150	27	FSM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	6.10945527743532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGTGTGCATGTGTGT	NA	False	NA	1	True	AATAAA	-14	NA	110709404	110729595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110709526_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ES_00060308	chr9	+	3633	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	207	junction_16	74.07658093993	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGTCACTCATTTCAA	1803	False	NA	20	True	AATAAA	-20	NA	113760502	113806267	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413_113805526_113805550
ES_00060309	chr9	+	3997	14	FSM	ENSMUSG00000009741.16	ENSMUST00000216891.2	3997	14	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_6	61.6247471999328	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTCACTCATTTCAAATC	1997	False	NA	23	True	AATAAA	-23	NA	113760696	113806270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ES_00060312	chr9	+	6656	3	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	0	3928	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	20	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGTGTCCATTCTTCAGA	NA	False	NA	16	True	AATAAA	-24	NA	114230172	114240272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_114230338_114233588_114236489_114236681
ES_00060314	chr9	+	3184	12	FSM	ENSMUSG00000040875.13	ENSMUST00000182384.8	2158	12	22	-1048	22	1048	multi-exon	FALSE	canonical	1	3	junction_1	20.7380354832004	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTGTCTTGTGTTATT	NA	False	NA	NA	False	ATTAAA	-3	NA	114819837	115062341	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_114819891_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ES_00060318	chr9	+	1085	5	FSM	ENSMUSG00000038708.11	ENSMUST00000212593.2	2309	5	0	1224	0	-1224	multi-exon	FALSE	canonical	3	121	junction_2	11.6726175299288	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	118335338	118359671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341
ES_00060321	chr9	+	3474	10	NNC	ENSMUSG00000038708.11	novel	4461	11	NA	NA	918	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	73.7458096738007	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118386765	118411587	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_118388852_118389373_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
ES_00060325	chr9	+	10397	10	FSM	ENSMUSG00000061393.15	ENSMUST00000165044.3	2093	10	-11	-8293	-11	6813	multi-exon	TRUE	canonical	3	128	junction_3	24.155872429691	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCTGAAGCAGACATACC	NA	False	NA	NA	False	NA	NA	NA	119231172	119270874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
ES_00060333	chr9	+	1599	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956909	119960625	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ES_00060337	chr9	+	3533	14	FSM	ENSMUSG00000032536.13	ENSMUST00000211439.2	3533	14	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	23.6693195168457	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGCCTTTCTTTTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	121126599	121284948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344
ES_00060346	chr9	+	1735	2	FSM	ENSMUSG00000013419.8	ENSMUST00000213743.2	1862	2	127	0	127	0	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGGGCAGGCCCAAG	9243	False	NA	NA	False	AATAAA	-20	NA	121596274	121598120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_121596450_121596560
ES_00060348	chr9	+	5027	9	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	2	-3	intron_retention	FALSE	canonical	1	1	junction_3	11.9209636774885	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCGAGTCTGTGTTCCT	8273	False	NA	NA	False	AATAAA	-25	NA	121946385	121998765	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_121946474_121960958_121961009_121961693_121961817_121963026_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ES_00060349	chr9	+	1664	9	FSM	ENSMUSG00000038145.18	ENSMUST00000134949.8	1664	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	11.6833214455479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGATGAGCTCCCGGA	8300	False	NA	NA	False	NA	NA	NA	121946412	121995455	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_121946474_121960958_121961009_121961693_121961817_121963052_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ES_00060352	chr9	+	1826	3	FSM	ENSMUSG00000036768.7	ENSMUST00000214921.2	1752	3	-45	-29	-5	29	multi-exon	FALSE	canonical	3	238	junction_2	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCATAGATATTATTTAAC	NA	False	NA	NA	False	AATAGA	-39	NA	122780105	122790542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_122780218_122788181_122788225_122788871
ES_00060356	chr9	+	535	6	FSM	ENSMUSG00000025785.6	ENSMUST00000215590.2	535	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	489.145622488845	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGGGGCAAAGGACATT	NA	False	NA	NA	False	NA	NA	NA	122942311	122959920	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_122942388_122947959_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891
ES_00060357	chr9	+	1258	5	FSM	ENSMUSG00000025785.6	ENSMUST00000214741.2	1107	5	-153	2	-153	-2	multi-exon	FALSE	canonical	3	1267	junction_1	78.9600373606801	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTGGTGTTGTTAGCAT	5278	False	NA	11	True	AATAAA	-16	NA	122956356	122965190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ES_00060363	chr9	+	2654	1	FSM	ENSMUSG00000093803.6	ENSMUST00000217354.3	2557	1	-271	174	-271	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCACTCAGAATAATTAT	NA	False	NA	NA	False	NA	NA	NA	124201931	124204585	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_124201900_124204600
ES_00060364	chr9	-	2519	5	FSM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	415.72677325378	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAATTCAGTAAAAGTT	-3	True	NA	-33	True	ATTAAA	-13	NA	4309471	4294964	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309287
ES_00060365	chr9	-	1323	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	8	-992	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTCGTCTTAGGGTTTC	9	True	NA	43	True	AGTAAA	-22	NA	4309459	4295956	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
ES_00060366	chr9	-	6641	47	NIC	ENSMUSG00000047193.17	novel	13972	89	NA	NA	-7	269	combination_of_known_junctions	FALSE	canonical	1	1	junction_39	4.41646900676464	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTGTGTACATTAAATG	NA	False	NA	NA	False	ATTAAA	-12	NA	7116636	6929034	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_6929624_6935238_6935356_6940542_6940625_6941594_6941705_6955906_6955997_6967079_6967290_6983389_6983507_6992523_6992629_6993937_6994147_6996863_6996940_7001340_7001497_7002555_7002667_7005489_7005616_7006715_7006877_7009970_7010044_7011172_7011305_7014138_7014217_7015473_7015525_7016729_7016796_7023310_7023401_7031640_7031785_7034989_7035125_7035599_7035720_7037652_7037817_7041601_7041726_7044329_7044429_7049082_7049193_7050341_7050484_7051369_7051497_7052560_7052648_7071007_7071130_7071800_7071925_7075761_7075923_7076212_7076327_7077871_7078010_7081003_7081159_7083156_7083239_7084933_7085077_7101073_7101188_7101304_7101601_7102310_7102560_7103654_7103786_7111424_7111593_7112047_7112151_7113085_7113231_7114864_7115017_7116393
ES_00060367	chr9	-	3164	6	NIC	ENSMUSG00000057367.13	novel	3130	7	NA	NA	-281	-1	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	62.474314722132	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGTGATTCATGAG	1501	False	NA	-2	True	AATAAA	-20	NA	7835537	7818228	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505
ES_00060370	chr9	-	2579	9	NIC	ENSMUSG00000032000.18	novel	2667	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	8.85649479195918	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGCTGGGCAGGTTTA	3	True	NA	NA	False	AATAAA	-33	NA	7873171	7848700	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7873056
ES_00060374	chr9	-	7637	11	ISM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	22192	0	21772	0	3prime_fragment	FALSE	canonical	2	7	junction_10	2.95972971738975	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTCCTCTTTTACCTTC	NA	False	NA	1	True	AATAAA	-17	NA	14504110	14453261	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049
ES_00060377	chr9	-	2387	14	NIC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	87	junction_6	33.440046148152	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTGCTGTCCATCC	NA	False	NA	-1	True	AATAAA	-16	NA	15243274	15228211	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
ES_00060378	chr9	-	7284	27	NIC	ENSMUSG00000046111.19	novel	7188	27	NA	NA	88	-1	intron_retention	FALSE	canonical	3	46	junction_7	34.5778642808496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTGCTGTCCATCC	9795	False	NA	-1	True	AATAAA	-16	NA	15268996	15228211	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ES_00060379	chr9	-	7403	28	NNC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	67	-1	intron_retention	FALSE	canonical	2	5	junction_25	49.7455252656017	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTGCTGTCCATCC	9774	False	NA	-1	True	AATAAA	-16	NA	15269017	15228211	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15263188_15263287_15264194_15264396_15265901_15266033_15268921
ES_00060380	chr9	-	4274	12	NIC	ENSMUSG00000046111.19	novel	4144	13	NA	NA	4	15	intron_retention	FALSE	canonical	3	87	junction_4	33.7969141336702	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTATATATTTATTTATT	NA	False	NA	-56	True	TATAAA	-12	NA	15244791	15228266	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
ES_00060381	chr9	-	4614	7	FSM	ENSMUSG00000045519.16	ENSMUST00000068079.14	4751	7	39	98	39	-98	multi-exon	FALSE	canonical	1	1	junction_4	13.5113121330075	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAGTGCCTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	20296434	20256529	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20260456_20260876_20260960_20261827_20261909_20263133_20263261_20264048_20264138_20265359_20265546_20296312
ES_00060382	chr9	-	205	1	FSM	ENSMUSG00000110761.2	ENSMUST00000215964.2	1939	1	688	1046	688	-1046	mono-exon	FALSE	NA	NA	NA	NA	NA	550	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCACTTCCAAATTCACA	NA	False	NA	NA	False	NA	NA	NA	20312468	20312263	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20312300_20312500
ES_00060383	chr9	-	12325	10	NNC	ENSMUSG00000063108.16	novel	11276	10	NA	NA	-63	1288	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	20.8918437626378	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCTTGGTCATAGTGTT	NA	False	NA	NA	False	NA	NA	NA	20371186	20338456	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_20340031_20340282_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842
ES_00060385	chr9	-	3553	7	FSM	ENSMUSG00000059475.14	ENSMUST00000115562.9	3557	7	4	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	10.4309901522126	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTCTAGTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	20404038	20379844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681
ES_00060386	chr9	-	6410	10	NNC	ENSMUSG00000060510.15	novel	6283	9	NA	NA	-157	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.9524125216	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAATGTTGTTTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	20432870	20406362	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_20409183_20409213_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
ES_00060388	chr9	-	4750	56	ISM	ENSMUSG00000004098.8	ENSMUST00000004201.8	6119	67	13048	-4	13048	4	3prime_fragment	TRUE	canonical	2	3	junction_45	3.60137714706082	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTCTTTAAAATGATT	NA	False	NA	2	True	AATAAA	-25	NA	20713315	20681341	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_20682275_20682366_20682607_20682882_20682952_20683403_20683517_20683600_20683800_20684380_20684435_20685189_20685226_20685309_20685364_20685611_20685720_20685856_20685911_20686326_20686381_20686528_20686637_20686761_20686816_20687129_20687184_20687387_20687442_20687608_20687663_20688287_20688396_20689772_20689827_20689960_20690015_20690096_20690151_20690311_20690366_20691196_20691305_20693103_20693158_20693782_20693837_20693920_20694029_20694779_20694888_20695964_20696019_20696441_20696532_20696668_20696777_20696868_20696923_20697494_20697549_20697646_20697701_20698385_20698431_20698556_20698611_20698826_20698872_20699846_20699901_20703940_20703995_20704805_20704914_20705006_20705061_20705242_20705288_20706952_20707007_20707105_20707151_20707245_20707300_20708517_20708563_20708678_20708733_20708869_20708915_20709713_20709768_20709884_20709930_20710331_20710386_20710555_20710610_20710704_20710759_20711538_20711593_20712363_20712418_20712511_20712569_20713062_20713147_20713239
ES_00060391	chr9	-	2988	17	FSM	ENSMUSG00000111497.2	ENSMUST00000217359.2	2988	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	140.679586627734	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGTTTTGTGTCCTTGG	NA	False	NA	-1	True	AATAAA	-18	NA	21003293	20978809	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20986586_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
ES_00060392	chr9	-	952	4	FSM	ENSMUSG00000079677.3	ENSMUST00000217150.2	951	4	0	-1	0	0	multi-exon	FALSE	canonical	3	216	junction_3	55.4276304943863	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984910	20978815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559
ES_00060393	chr9	-	4234	12	FSM	ENSMUSG00000111497.2	ENSMUST00000217282.2	4234	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	139.287442849444	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20992648	20978815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20979222_20979325_20979414_20984370_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991465_20992000_20992114_20992270_20992401_20992479
ES_00060394	chr9	-	4781	25	NNC	ENSMUSG00000032175.12	novel	4770	25	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_24	21.4737808475566	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTGTTGCTTGCATTT	NA	False	NA	-2	True	NA	NA	NA	21042463	21015363	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042382
ES_00060397	chr9	-	1979	11	FSM	ENSMUSG00000003309.15	ENSMUST00000115433.11	2586	11	19	588	-2	260	multi-exon	FALSE	canonical	2	2	junction_6	7.33552997403732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCTGTCCACCTTGCTG	1338	False	NA	NA	False	NA	NA	NA	21223614	21206496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214068_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
ES_00060398	chr9	-	214	2	Antisense	novelGene_ENSMUSG00000033335.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	159	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAATAAGGGGCCCAAA	NA	False	NA	NA	False	AATAAA	-14	NA	21346499	21324874	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_21325041_21346451
ES_00060399	chr9	-	1932	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	-38	0	0	0	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6086	False	NA	-16	True	AATAAA	-17	NA	21504106	21499977	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ES_00060401	chr9	-	1402	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	59847	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1064.06755424644	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTCCCTTAAGCTGT	NA	False	NA	NA	False	NA	NA	NA	21671598	21606890	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21606920_21666729_21667592_21668412_21668490_21668585_21668689_21668978_21669126_21671414
ES_00060402	chr9	-	5002	14	NNC	ENSMUSG00000032194.10	novel	5040	12	NA	NA	0	14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	159.485415111025	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTCTCCTTCTTTTT	NA	False	NA	2	True	AATAAA	-29	NA	21710040	21678065	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21678614_21678633_21679514_21679545_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
ES_00060403	chr9	-	3426	19	FSM	ENSMUSG00000032198.10	ENSMUST00000215729.2	3426	19	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_8	55.0334634451207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	NA	False	NA	NA	False	TTTAAA	-18	NA	21729211	21711475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716089_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108
ES_00060405	chr9	-	1283	1	FSM	ENSMUSG00000040883.19	ENSMUST00000216178.2	877	1	-801	395	-801	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAACTTCCCAGCCACC	NA	False	NA	NA	False	NA	NA	NA	21833986	21832703	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21832700_21834000
ES_00060406	chr9	-	376	2	FSM	ENSMUSG00000040146.10	ENSMUST00000213558.2	523	2	147	0	147	0	multi-exon	FALSE	canonical	2	4	junction_1	0	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCATTAGGCCATTGGA	NA	False	NA	NA	False	NA	NA	NA	21885432	21883044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21883306_21885317
ES_00060407	chr9	-	2534	7	FSM	ENSMUSG00000038895.17	ENSMUST00000216916.2	2534	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	10.2102889283311	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTCTCTTCCTGACC	9526	False	NA	48	True	NA	NA	NA	21982572	21966706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21967190_21967288_21967825_21968582_21968695_21968796_21969712_21976996_21977213_21979443_21979488_21982344
ES_00060409	chr9	-	1014	3	FSM	ENSMUSG00000013822.8	ENSMUST00000214394.2	567	3	0	-447	0	0	multi-exon	FALSE	canonical	2	3	junction_2	229.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCGCTGTACTTCTTGG	7993	False	NA	-6	True	AATAAA	-17	NA	22028419	22024284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22024976_22025103_22025240_22028232
ES_00060410	chr9	-	1349	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	98.7734149455206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4541	False	NA	-23	True	AATAAA	-17	NA	22041894	22038026	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
ES_00060411	chr9	-	1772	6	NNC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	-480	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_5	93.858617079094	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	8416	False	NA	-30	True	AATAAA	-10	NA	22043607	22038033	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032_22043161_22043229
ES_00060423	chr9	-	1609	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_5	6.40624695121879	340	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34899961	34889330	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895970_34896290_34896441_34899788
ES_00060424	chr9	-	587	7	FSM	ENSMUSG00000032038.8	ENSMUST00000216557.2	587	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	66.4473475768597	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGTGTGGTCATCCCTC	NA	False	NA	NA	False	NA	NA	NA	35017963	34964670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35017870
ES_00060426	chr9	-	1621	8	NNC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_2	45.5246064883417	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGCTCTACTTTGAAGA	6389	False	NA	-16	True	ATTAAA	-25	NA	35179076	35128526	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_35129044_35129224_35129282_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ES_00060427	chr9	-	1660	9	NNC	ENSMUSG00000050471.18	novel	1962	10	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	71.7965876626459	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCAGAACTCTGGCTCT	6402	False	NA	-26	True	ATTAAA	-15	NA	35179063	35128536	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_35129044_35129224_35129282_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35159964_35160027_35179018
ES_00060428	chr9	-	215	1	FSM	ENSMUSG00000066771.3	ENSMUST00000091097.3	318	1	97	6	97	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATGAGCCCTCCCCCA	6864	False	NA	NA	False	NA	NA	NA	35193034	35192819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35192800_35193000
ES_00060429	chr9	-	1239	3	FSM	ENSMUSG00000032108.4	ENSMUST00000034619.2	1334	3	31	64	31	-64	multi-exon	FALSE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAAGTTGTCTTTGTGTC	NA	False	NA	NA	False	AAGAAA	-10	NA	35701377	35699409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35700409_35700909_35701036_35701263
ES_00060433	chr9	-	3236	1	FSM	ENSMUSG00000111421.2	ENSMUST00000214258.2	3236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGAAAGGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	37210657	37207421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_37207400_37210700
ES_00060435	chr9	-	422	3	FSM	ENSMUSG00000038112.16	ENSMUST00000147753.2	677	3	255	0	255	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTATCACTTGTATCTT	NA	False	NA	NA	False	NA	NA	NA	39502027	39500257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_39500422_39500938_39501066_39501896
ES_00060436	chr9	-	247	4	FSM	ENSMUSG00000038112.16	ENSMUST00000136814.2	632	4	36	349	36	-87	multi-exon	TRUE	canonical	1	1	junction_1	0.942809041582063	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCATCAATGATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	39514887	39511939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_39511967_39512075_39512134_39514510_39514608_39514822
ES_00060437	chr9	-	945	1	FSM	ENSMUSG00000045812.6	ENSMUST00000056795.4	945	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCTTAGCAGAAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	40012784	40011839	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_40011800_40012800
ES_00060438	chr9	-	1303	4	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109728	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	30.4448499567478	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATTTATGTATTGCTA	NA	False	NA	NA	False	AATAAA	-17	NA	40151208	40038299	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_40039350_40063206_40063277_40121021_40121120_40151123
ES_00060439	chr9	-	728	6	FSM	ENSMUSG00000040111.18	ENSMUST00000155265.2	865	6	137	0	137	0	multi-exon	FALSE	canonical	3	12	junction_4	6.89927532426414	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCCTCACTGCCTGGCA	NA	False	NA	NA	False	AATACA	-6	NA	40218154	40211325	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035
ES_00060441	chr9	-	813	4	FSM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	0	6	0	0	multi-exon	FALSE	canonical	1	2	junction_3	4.78423336480244	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTGTGTGTGACTGCC	NA	False	NA	NA	False	AATAAA	-23	NA	40695477	40692043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_40692492_40694218_40694287_40694531_40694743_40695391
ES_00060442	chr9	-	4816	7	Fusion	ENSMUSG00000032018.15_ENSMUSG00000111767.2	novel	4787	6	NA	NA	0	-9561	multi-exon	FALSE	non_canonical	0	0	junction_1	74.8830569770106	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATACATCGCTTCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	42175551	42104504	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr9_-_42104532_42162887_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
ES_00060443	chr9	-	555	7	FSM	ENSMUSG00000059495.15	ENSMUST00000213566.2	555	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.50640709864771	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAGATCCAGGAGGCCAA	NA	False	NA	NA	False	NA	NA	NA	42953928	42929422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42929468_42929630_42929709_42931900_42932080_42934106_42934169_42937475_42937526_42938492_42938592_42953886
ES_00060444	chr9	-	734	1	FSM	ENSMUSG00000111129.2	ENSMUST00000213140.2	2323	1	-67	1656	-67	-1656	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGAAGAGGGCACACTGT	NA	False	NA	NA	False	NA	NA	NA	43647800	43647066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_43647100_43647800
ES_00060445	chr9	-	1512	11	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	10	2390	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.3122653239824	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCAAATGTTATGTCTT	NA	False	NA	NA	False	AATAAA	-8	NA	44216958	44201346	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_44201480_44207680_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
ES_00060447	chr9	-	2791	13	FSM	ENSMUSG00000032120.12	ENSMUST00000214602.2	2808	13	0	17	0	-17	multi-exon	FALSE	canonical	3	36	junction_1	6.46947962873883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGCTCCGCCGTTTAAA	5348	False	NA	NA	False	NA	NA	NA	44231549	44224284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
ES_00060449	chr9	-	744	6	FSM	ENSMUSG00000032120.12	ENSMUST00000214915.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	5.38887743412299	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGCCCAGGACGAGTTGG	9446	False	NA	NA	False	ATTAAA	-24	NA	44227451	44225083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402
ES_00060450	chr9	-	1572	15	NNC	ENSMUSG00000032126.17	novel	1605	14	NA	NA	54	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.298284026587	1313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCCTTCAATTCCTACAG	1462	False	NA	87	True	NA	NA	NA	44255471	44247557	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_44247591_44247647_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ES_00060453	chr9	-	3812	14	FSM	ENSMUSG00000032127.10	ENSMUST00000214510.2	3812	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	62.6281408287731	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCGCCCTCAGGTGAC	6404	False	NA	-31	True	NA	NA	NA	44272941	44259224	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44265853_44266260_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
ES_00060455	chr9	-	2952	13	ISM	ENSMUSG00000048537.17	ENSMUST00000144251.8	3589	17	4726	0	-87	0	3prime_fragment	FALSE	canonical	3	19	junction_8	6.21601873299051	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	NA	False	NA	0	True	AATAAA	-18	NA	44619811	44597604	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690
ES_00060456	chr9	-	5246	20	FSM	ENSMUSG00000048537.17	ENSMUST00000134465.8	5244	20	0	-2	0	0	multi-exon	FALSE	canonical	1	2	junction_12	12.3759215779289	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	9464	False	NA	0	True	AATAAA	-18	NA	44639397	44597604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44637306_44637478_44638347_44638472_44639316
ES_00060462	chr9	-	3267	18	NIC	ENSMUSG00000059890.17	novel	3486	19	NA	NA	-3	-100	combination_of_known_junctions	FALSE	canonical	3	40	junction_8	10.0238469985589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTGTTTGTGAAAATATT	5337	False	NA	NA	False	GATAAA	-15	NA	44876861	44844368	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
ES_00060463	chr9	-	3245	9	FSM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	0	129	0	-129	multi-exon	FALSE	canonical	3	42	junction_4	11.548132965982	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGGGGAACTGGGCTC	5322	False	NA	NA	False	ATTAAA	-17	NA	44876876	44857481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
ES_00060464	chr9	-	1440	8	FSM	ENSMUSG00000032093.8	ENSMUST00000102832.3	1462	8	19	3	19	-3	multi-exon	FALSE	canonical	2	5	junction_4	3.13635691430002	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTATGTCTCTTTTCT	4770	False	NA	NA	False	AATAAA	-14	NA	44920892	44910040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44910886_44911732_44911780_44912276_44912445_44913435_44913652_44916809_44916825_44918473_44918492_44920645_44920748_44920863
ES_00060465	chr9	-	2847	14	FSM	ENSMUSG00000042790.17	ENSMUST00000161187.8	2847	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_11	14.9741394434206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAATGCATCTGGGGG	9590	False	NA	NA	False	ATTAAA	-14	NA	45817705	45774988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103_45816218_45817649
ES_00060467	chr9	-	4297	27	NIC	ENSMUSG00000034908.17	novel	4012	27	NA	NA	4	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_16	40.2004776385414	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGGTCTTACTGATGTG	NA	False	NA	-30	True	AATAAA	-18	NA	45866552	45849170	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45858926_45858996_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ES_00060468	chr9	-	1070	8	NNC	ENSMUSG00000032026.8	novel	1077	7	NA	NA	0	36447	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.276883664263	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAACAAAAAAAACCCCAAC	NA	False	NA	NA	False	NA	NA	NA	48391879	48343364	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_48343390_48379811_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ES_00060471	chr9	-	6062	19	NNC	ENSMUSG00000039542.17	novel	6050	18	NA	NA	0	52646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.8308505083166	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTAAAATGCACACTG	8520	False	NA	NA	False	ATTAAA	-31	NA	49710222	49360789	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_49360815_49413448_49416864_49419888_49420006_49421004_49421213_49431334_49431513_49434821_49434949_49454309_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481201_49709977
ES_00060472	chr9	-	2525	14	FSM	ENSMUSG00000039542.17	ENSMUST00000192584.2	2525	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	45.8701537594672	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACGGTGACGAAATAATTA	8684	False	NA	NA	False	AATAAA	-22	NA	49710058	49442575	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_49443274_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481201_49709977
ES_00060473	chr9	-	3118	4	FSM	ENSMUSG00000032067.7	ENSMUST00000213640.2	3117	4	0	-1	0	0	multi-exon	FALSE	canonical	3	95	junction_3	19.3620476419435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7954	False	NA	NA	False	AATAAA	-18	NA	50439956	50432916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50433637_50433828_50433900_50436022_50438250_50439856
ES_00060479	chr9	-	459	2	FSM	ENSMUSG00000000168.11	ENSMUST00000132455.3	459	2	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTCAGTTAGGCGTTTT	5963	False	NA	NA	False	NA	NA	NA	50555362	50551217	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50551640_50555325
ES_00060482	chr9	-	12373	63	NIC	ENSMUSG00000034218.17	novel	9787	64	NA	NA	-24	2352	combination_of_known_junctions	TRUE	canonical	0	0	junction_13	18.3797169683776	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTTTCATGTTCCTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	53448064	53348096	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53373780_53373886_53375452_53375602_53376331_53376435_53376525_53376615_53379264_53379353_53382651_53382808_53384915_53385004_53390880_53391059_53391873_53392051_53393601_53393744_53395372_53395545_53397308_53397405_53398113_53398247_53399205_53399371_53399849_53400022_53401410_53401611_53402213_53402341_53403540_53403669_53404337_53404585_53405911_53406082_53407151_53407326_53408432_53408554_53410156_53410288_53410421_53410498_53411971_53412128_53412219_53412303_53414244_53414445_53415245_53415427_53417842_53417933_53419077_53419204_53421462_53421589_53423003_53423230_53424404_53424501_53426457_53426653_53427504_53427877_53429802_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ES_00060484	chr9	-	1759	3	FSM	ENSMUSG00000032030.17	ENSMUST00000141803.2	1712	3	-47	0	-47	0	multi-exon	FALSE	canonical	3	345	junction_2	35	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGGCAACACCTACCTTG	3382	False	NA	NA	False	AATAAA	-17	NA	53533381	53527899	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_53529311_53532459_53532584_53533157
ES_00060486	chr9	-	2789	14	FSM	ENSMUSG00000032281.12	ENSMUST00000034822.12	2880	14	83	8	83	-8	multi-exon	FALSE	canonical	0	0	junction_5	2.25320284859643	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGTACCGGATGTCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	54569071	54512168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54512761_54516299_54516547_54516978_54517119_54522019_54522238_54523150_54523382_54525305_54525488_54529149_54529327_54529720_54529871_54529959_54530041_54534714_54534836_54535153_54535243_54535689_54535911_54549879_54549981_54568832
ES_00060488	chr9	-	270	1	FSM	ENSMUSG00000044820.7	ENSMUST00000054018.7	769	1	16	483	16	-483	mono-exon	FALSE	NA	NA	NA	NA	NA	4438	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAAGCACAACCTCGGCT	NA	False	NA	NA	False	NA	NA	NA	54858266	54857996	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54858000_54858300
ES_00060491	chr9	-	4533	2	FSM	ENSMUSG00000032733.7	ENSMUST00000050916.7	4571	2	38	0	38	0	multi-exon	FALSE	canonical	1	2	junction_1	0	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGCACAGCTTCTTCTT	NA	False	NA	NA	False	GATAAA	-24	NA	56835617	56824476	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_56825989_56832596
ES_00060493	chr9	-	951	9	NNC	ENSMUSG00000032299.11	novel	858	8	NA	NA	-4993	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	362.072830208233	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	1284	False	NA	0	True	AATAAA	-19	NA	57070608	57062318	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555_57065634_57070537
ES_00060497	chr9	-	757	2	FSM	ENSMUSG00000032306.15	ENSMUST00000145543.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAGAAGAAGGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	57456955	57455872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57455994_57456319
ES_00060498	chr9	-	939	3	FSM	ENSMUSG00000032306.15	ENSMUST00000124593.2	939	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	44	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACCACAGAGCTATAGCT	8998	False	NA	NA	False	NA	NA	NA	57459999	57457258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57458057_57459429_57459558_57459986
ES_00060499	chr9	-	2790	14	NIC	ENSMUSG00000032312.8	novel	2749	13	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_13	41.3604447574315	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57552926	57533928	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277_57541329_57552277
ES_00060500	chr9	-	3924	12	FSM	ENSMUSG00000032316.9	ENSMUST00000216095.2	3924	12	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_11	42.6560334546315	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCTTGTGGAAAGCCAAG	9825	False	NA	-11	True	AATAAA	-16	NA	57672386	57657906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57668324_57668998_57669151_57672356
ES_00060503	chr9	-	3929	3	FSM	ENSMUSG00000051243.15	ENSMUST00000114144.9	3880	3	-48	-1	-48	0	multi-exon	FALSE	canonical	2	3	junction_2	4	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGAGATTTTTGGGGT	7175	False	NA	1	True	AATAAA	-20	NA	58111650	58103579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58107267_58108562_58108656_58111501
ES_00060504	chr9	-	4217	8	FSM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	0	-11	0	0	multi-exon	FALSE	canonical	3	33	junction_1	129.417848814747	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGATTGCAATCTCTA	2272	False	NA	-1	True	AGTAAA	-23	NA	58156948	58125358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00060506	chr9	-	577	1	FSM	ENSMUSG00000066592.4	ENSMUST00000085631.4	534	1	5	-48	5	48	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAGATGGATATGC	NA	False	NA	NA	False	AATAAA	-45	NA	59053488	59052911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59052900_59053500
ES_00060507	chr9	-	817	2	Intergenic	novelGene_4157	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGTATCAGTATTTTTA	NA	False	NA	NA	False	AATAAA	-36	NA	59182434	59181493	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_59182170_59182293
ES_00060511	chr9	-	2779	16	FSM	ENSMUSG00000047766.16	ENSMUST00000114034.9	2779	16	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	6.23965811029205	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	3535	False	NA	NA	False	AATAAA	-21	NA	60595401	60494511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60592317_60592406_60594421_60594479_60595094
ES_00060512	chr9	-	2980	17	FSM	ENSMUSG00000047766.16	ENSMUST00000065603.12	3017	17	37	0	-3	0	multi-exon	FALSE	canonical	1	5	junction_10	6.23372881989584	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	3532	False	NA	NA	False	AATAAA	-21	NA	60595404	60494511	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60595094
ES_00060514	chr9	-	3311	24	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-1361	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.3387743900882	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGTCTCAAAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	61855417	61823186	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_61823212_61824557_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893_61854188_61855352
ES_00060515	chr9	-	3068	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTTGTGTGGTGGCCAT	NA	False	NA	-4	True	AATAAA	-17	NA	61854039	61824562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ES_00060516	chr9	-	2917	23	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_16	70.2958329649162	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAAACAAATG	NA	False	NA	NA	False	NA	NA	NA	61854056	61824772	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ES_00060517	chr9	-	4804	4	NIC	ENSMUSG00000032252.15	novel	4850	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	13	junction_3	71.2101740546173	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTGGATATTTCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	62029937	61964529	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_61968318_61975666_61975913_61977296_61977896_62029766
ES_00060520	chr9	-	4865	1	FSM	ENSMUSG00000032403.9	ENSMUST00000185528.2	1771	1	-56	-3038	-56	9	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTGTGTGGTCTTTTT	NA	False	NA	-2	True	AATAAA	-24	NA	63306584	63301719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_63301700_63306600
ES_00060521	chr9	-	3836	10	NIC	ENSMUSG00000032400.19	novel	1831	18	NA	NA	-2294	32	intron_retention	FALSE	canonical	3	116	junction_4	318.543483087135	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCTTTGACAGATGAAG	NA	False	NA	NA	False	AATAGA	-45	NA	64065326	64045242	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054221_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445
ES_00060524	chr9	-	2443	12	NNC	ENSMUSG00000004936.9	novel	2436	11	NA	NA	0	13792	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	169.313636302622	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTCTCTGTGTAACCCT	NA	False	NA	NA	False	NA	NA	NA	64160913	64079259	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_64079286_64093070_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
ES_00060525	chr9	-	2444	12	NNC	ENSMUSG00000004936.9	novel	2436	11	NA	NA	0	13792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	169.313636302622	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTCTCTGTGTAACCCT	NA	False	NA	NA	False	NA	NA	NA	64160913	64079259	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_64079287_64093070_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
ES_00060526	chr9	-	1730	3	FSM	ENSMUSG00000004936.9	ENSMUST00000152675.2	688	3	104	-1146	104	179	multi-exon	FALSE	canonical	3	537	junction_2	36.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTAGGCTATGCCCAGTG	NA	False	NA	NA	False	NA	NA	NA	64095434	64092872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_64094081_64094572_64094619_64094958
ES_00060527	chr9	-	238	2	Antisense	novelGene_ENSMUSG00000032397.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	281	junction_1	0	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	64195144	64185690	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_64185801_64195016
ES_00060529	chr9	-	206	2	Antisense	novelGene_ENSMUSG00000032393.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	26	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAATTGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	64953469	64951547	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_64951674_64953389
ES_00060530	chr9	-	293	1	FSM	ENSMUSG00000111725.2	ENSMUST00000215863.2	724	1	530	-99	530	99	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCCTACCCCAAAACAAGC	NA	False	NA	NA	False	NA	NA	NA	65243649	65243356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65243400_65243600
ES_00060531	chr9	-	3369	7	NNC	ENSMUSG00000050721.10	novel	3273	6	NA	NA	-76	2280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.73053390247253	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAACAGAAAAGAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	65487398	65457699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_65457723_65461668_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
ES_00060536	chr9	-	4905	6	FSM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	0	5	0	2	multi-exon	FALSE	canonical	1	1	junction_5	4.70744091837593	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTCTTTCTTGGGGGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	66702772	66682488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66686663_66691799_66691928_66696927_66697051_66697879_66697951_66701351_66701523_66702534
ES_00060537	chr9	-	4301	2	NNC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	5968	24136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	66934139	66905735	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_66905769_66929871
ES_00060538	chr9	-	1642	9	NNC	ENSMUSG00000032366.16	novel	1607	8	NA	NA	0	24136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.520934502716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	66951084	66905735	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_66905769_66929871_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00060539	chr9	-	1802	9	NNC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	0	24136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.222220295351	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	66951244	66905735	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_66905769_66929871_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00060541	chr9	-	1120	9	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTGTACGCTATTCCT	NA	False	NA	-31	True	NA	NA	NA	66951189	66935270	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00060542	chr9	-	1680	8	NIC	ENSMUSG00000032366.16	novel	1797	9	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	209	junction_4	194.584329339466	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTGGAAGTTAGTGGT	NA	False	NA	-9	True	AATAAA	-15	NA	66951112	66936129	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ES_00060545	chr9	-	12287	59	NNC	ENSMUSG00000052698.16	novel	12132	58	NA	NA	-74353	2	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_58	17.1195697102182	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAAGGTTTCATGG	NA	False	NA	NA	False	AATAAA	-17	NA	67541338	67124366	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829_67237933_67239013_67239143_67241471_67241607_67245491_67245606_67247563_67247678_67249316_67249446_67251347_67251515_67253602_67253898_67255403_67255572_67261727_67261827_67262344_67262554_67263941_67264051_67268603_67268718_67269918_67270100_67273186_67273264_67274411_67274514_67277893_67278050_67283009_67283115_67284088_67284153_67293838_67293967_67295851_67295995_67299733_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895_67466973_67541172
ES_00060547	chr9	-	1700	1	FSM	ENSMUSG00000055125.8	ENSMUST00000068526.7	1497	1	-93	-110	-71	110	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGGGAAGTGGAGGTCG	NA	False	NA	NA	False	NA	NA	NA	67667583	67665883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_67665900_67667600
ES_00060549	chr9	-	565	1	FSM	ENSMUSG00000062874.7	ENSMUST00000071565.7	801	1	258	-22	258	22	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACATAATTATAATTACAAA	NA	False	NA	NA	False	ACTAAA	-29	NA	69358059	69357494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_69357500_69358100
ES_00060550	chr9	-	4798	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	170	junction_8	55.2423386211279	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTCATAATTAGTG	2246	False	NA	-13	True	AATAAA	-21	NA	70411007	70332705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ES_00060551	chr9	-	4663	16	NNC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_13	104.342938854955	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGTCTTTGTGTTTCAT	2246	False	NA	-21	True	AATAAA	-13	NA	70411007	70332713	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383321_70383531_70383951_70410221_70410285_70410740
ES_00060552	chr9	-	4813	14	NNC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	92.264348798285	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTGTCTTTGTGTTTCA	2246	False	NA	-22	True	AATAAA	-12	NA	70411007	70332714	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349707_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ES_00060553	chr9	-	1076	5	ISM	ENSMUSG00000032207.11	ENSMUST00000034731.10	1920	9	118026	38	117831	6	3prime_fragment	FALSE	canonical	3	43	junction_2	8.95823643358446	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGCTTTGCTGTTATA	NA	False	NA	NA	False	AATAAA	-17	NA	70724064	70705447	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_70705691_70709354_70709574_70710978_70711097_70719951_70720195_70723811
ES_00060554	chr9	-	3865	11	FSM	ENSMUSG00000090626.10	ENSMUST00000085358.12	3904	11	39	0	18	0	multi-exon	FALSE	canonical	3	153	junction_3	28.6581576518799	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTAATGTGTTTAATTTT	7920	False	NA	NA	False	AATAAA	-23	NA	72399199	72365853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020
ES_00060555	chr9	-	2091	3	FSM	ENSMUSG00000090626.10	ENSMUST00000183399.8	2676	3	-121	706	-121	25	multi-exon	FALSE	canonical	3	186	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCAACTCTGGCCTGACTT	NA	False	NA	21	True	AATAAA	-38	NA	72382666	72368331	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72368561_72369137_72369273_72380939
ES_00060558	chr9	-	1182	11	ISM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	166	2023	0	183	5prime_fragment	FALSE	canonical	3	143	junction_10	32.9740807301735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTATACGTGTGAAGTC	7902	False	NA	NA	False	CATAAA	-17	NA	72399217	72369024	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ES_00060564	chr9	-	3116	12	NNC	ENSMUSG00000079469.11	novel	2193	12	NA	NA	55	6	intron_retention	FALSE	non_canonical	1	2	junction_8	17.8033333307544	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAAGTTGCTTCTGGTT	NA	False	NA	-5	True	AATAAA	-19	NA	72946878	72921939	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939454_72941768_72941874_72943985_72944104_72945904_72946041_72946743
ES_00060565	chr9	-	1781	1	FSM	ENSMUSG00000079469.11	ENSMUST00000184776.2	1594	1	-446	259	-446	-259	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGAAGGCAGTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	72926932	72925151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72925200_72926900
ES_00060566	chr9	-	215	1	Intergenic	novelGene_4198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATCTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72944418	72944203	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_72944200_72944400
ES_00060567	chr9	-	482	1	FSM	ENSMUSG00000090001.2	ENSMUST00000162765.2	543	1	80	-19	80	19	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAGATAAAGTTAAAGGT	NA	False	NA	NA	False	AATAAA	-16	NA	75006342	75005860	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75005900_75006300
ES_00060568	chr9	-	992	2	FSM	ENSMUSG00000111348.2	ENSMUST00000216737.2	1377	2	385	0	385	0	multi-exon	FALSE	canonical	1	1	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGGGTTGTCATGGGACT	NA	False	NA	NA	False	NA	NA	NA	75221768	75217616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75218186_75221345
ES_00060569	chr9	-	1334	1	FSM	ENSMUSG00000111495.2	ENSMUST00000215494.2	1338	1	-52	56	-52	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGAAGAGGTGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	75283282	75281948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75281900_75283300
ES_00060570	chr9	-	615	3	FSM	ENSMUSG00000042688.17	ENSMUST00000174034.2	615	3	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGATTCTATTACAGATG	NA	False	NA	NA	False	NA	NA	NA	75304889	75300370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75300812_75302791_75302937_75304860
ES_00060571	chr9	-	207	2	Antisense	novelGene_ENSMUSG00000042487.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	404	junction_1	0	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGGTGAGATCGCTTGT	NA	False	NA	NA	False	NA	NA	NA	75358394	75348065	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_75348220_75358341
ES_00060572	chr9	-	1082	1	FSM	ENSMUSG00000058587.10	ENSMUST00000214733.2	2990	1	1822	86	-1297	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTCCATAGTAGGTATT	NA	False	NA	NA	False	NA	NA	NA	75411643	75410561	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75410600_75411600
ES_00060573	chr9	-	889	4	FSM	ENSMUSG00000058587.10	ENSMUST00000215821.2	898	4	0	9	0	-9	multi-exon	FALSE	canonical	1	1	junction_1	245.142588892442	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTAAATCTGTGGATTA	NA	False	NA	NA	False	NA	NA	NA	75466876	75428190	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75428661_75436650_75436808_75439707_75439875_75466781
ES_00060574	chr9	-	3918	2	FSM	ENSMUSG00000058587.10	ENSMUST00000217459.2	3918	2	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCCTGTTTTATCTTCC	NA	False	NA	NA	False	NA	NA	NA	75466939	75436114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75439875_75466781
ES_00060577	chr9	-	963	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3897	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78249931	78238299	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
ES_00060580	chr9	-	505	2	FSM	ENSMUSG00000037742.15	ENSMUST00000143570.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	15744	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATGTTGCTTGCATAGC	9323	False	NA	NA	False	NA	NA	NA	78386783	78386193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78386475_78386559
ES_00060583	chr9	-	3194	1	FSM	ENSMUSG00000059422.6	ENSMUST00000182917.2	1201	1	-77	-1916	-77	1916	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTCCAAAGGTACTGA	NA	False	NA	NA	False	NA	NA	NA	78729197	78726003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78726000_78729200
ES_00060585	chr9	-	412	3	FSM	ENSMUSG00000032253.14	ENSMUST00000189927.2	890	3	0	478	0	-478	multi-exon	FALSE	canonical	3	46	junction_2	6.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCGAAATCCATTTTAACT	NA	False	NA	NA	False	NA	NA	NA	82810204	82808378	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_82808585_82809087_82809242_82810152
ES_00060586	chr9	-	4101	8	NIC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	-1970	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	8.13658906622751	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGATCCTTTATTTGAAT	NA	False	NA	-5	True	AATAAA	-14	NA	83310992	83275471	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83310932
ES_00060588	chr9	-	3131	12	FSM	ENSMUSG00000056919.10	ENSMUST00000144137.2	3131	12	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	7.74383252328977	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGATCCATTCCCACC	NA	False	NA	NA	False	AATACA	-11	NA	87137341	87107773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
ES_00060589	chr9	-	1819	13	FSM	ENSMUSG00000032422.19	ENSMUST00000140439.8	1765	13	-52	-2	-52	0	multi-exon	FALSE	canonical	3	163	junction_6	19.7924999824569	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATTTACTGTCT	NA	False	NA	-2	True	AATAAA	-40	NA	88280726	88258802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291
ES_00060591	chr9	-	1312	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239203.2	1519	4	50	157	10	88	multi-exon	FALSE	canonical	3	405	junction_1	345.790238278771	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGTGCAAAGCGCACTG	NA	False	NA	81	True	NA	NA	NA	88404960	88403014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403770_88403970_88404029_88404359_88404435_88404536
ES_00060593	chr9	-	1106	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239184.2	1104	4	0	-2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	276.362483384091	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404941	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359
ES_00060594	chr9	-	1638	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239219.2	1636	2	0	-2	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404941	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702
ES_00060595	chr9	-	1439	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	0	-2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	214.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404943	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970
ES_00060596	chr9	-	1408	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239290.2	1392	3	0	-16	0	0	multi-exon	FALSE	canonical	3	1073	junction_1	58.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404943	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88404029_88404359_88404435_88404536
ES_00060597	chr9	-	1538	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239284.2	1533	3	0	-5	0	0	multi-exon	FALSE	canonical	3	405	junction_1	392.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404943	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403770_88403970_88404435_88404536
ES_00060598	chr9	-	1023	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	655	0	10	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404960	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
ES_00060599	chr9	-	824	4	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	44	1	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	226.851395313222	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATCAATAGAAATT	NA	False	NA	NA	False	AATAAA	-17	NA	88601822	88570657	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_88571039_88597540_88597803_88598546_88598617_88601711
ES_00060600	chr9	-	602	5	FSM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	50.4746223363781	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGGTTATGAGCCATT	NA	False	NA	NA	False	TATAAA	-28	NA	88740923	88739284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
ES_00060601	chr9	-	374	1	Intergenic	novelGene_4223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTTTCTGTGTTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	89965831	89965457	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_89965500_89965800
ES_00060602	chr9	-	4646	10	FSM	ENSMUSG00000062270.15	ENSMUST00000190377.7	4640	10	0	-6	0	0	multi-exon	FALSE	canonical	3	6220	junction_6	287.280007082177	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996693	89973717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ES_00060604	chr9	-	5914	14	NNC	ENSMUSG00000037410.14	novel	5956	13	NA	NA	14	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	19.324999904315	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGACAGAAGCCTCTAC	NA	False	NA	-6	True	AATAAA	-43	NA	90152843	90084085	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_90086446_90086502_90087276_90089825_90089948_90091720_90091907_90097530_90097649_90100712_90101208_90104359_90104554_90105491_90105603_90108073_90108458_90109382_90109628_90110990_90111155_90123062_90123232_90131843_90131998_90152404
ES_00060605	chr9	-	917	4	NNC	ENSMUSG00000037410.14	novel	3473	3	NA	NA	22	17	intron_retention	FALSE	canonical	3	8	junction_1	32.9679979508749	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTGTATTGGAACTGA	NA	False	NA	NA	False	AATAAA	-35	NA	90152800	90120315	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_90120514_90123062_90123232_90131843_90131998_90152404
ES_00060606	chr9	-	275	1	FSM	ENSMUSG00000098766.3	ENSMUST00000183558.3	104	1	75	-246	75	246	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCAGTCATTAATCATTA	NA	False	NA	NA	False	NA	NA	NA	92149339	92149064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_92149100_92149300
ES_00060607	chr9	-	826	1	FSM	ENSMUSG00000103622.2	ENSMUST00000191720.2	4069	1	301	2942	301	-2942	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGCTTTAACAAGAT	NA	False	NA	NA	False	AATGAA	-44	NA	92424621	92423795	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_92423800_92424600
ES_00060611	chr9	-	1805	3	FSM	ENSMUSG00000040433.17	ENSMUST00000132060.8	1799	3	0	-6	0	6	multi-exon	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGGGAAGAAGGGGTT	2482	False	NA	NA	False	NA	NA	NA	96634780	96629327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96629572_96630522_96630658_96633354
ES_00060614	chr9	-	7006	5	NNC	ENSMUSG00000032449.14	novel	5227	7	NA	NA	-709	1233	at_least_one_novel_splicesite	TRUE	canonical	3	125	junction_4	483.439952320865	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTAGGAAGGCTGTT	NA	False	NA	NA	False	NA	NA	NA	96972906	96955780	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96971872
ES_00060615	chr9	-	5323	8	NNC	ENSMUSG00000032449.14	novel	5227	7	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	223	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTCTTGTTTCCACCT	NA	False	NA	0	True	NA	NA	NA	96993203	96957013	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
ES_00060618	chr9	-	4617	23	NIC	ENSMUSG00000032462.15	novel	6478	24	NA	NA	-118	-6	combination_of_known_splicesites	FALSE	canonical	3	13	junction_20	50.0203470996248	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGACATGTGGGTGTCTT	NA	False	NA	-7	True	AATAAA	-19	NA	99022258	98920459	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_98921904_98922973_98923107_98924576_98924723_98926797_98926922_98928599_98928768_98934357_98934437_98936023_98936134_98937394_98937574_98942237_98942338_98943783_98943928_98944889_98945012_98946072_98946262_98947612_98947664_98952293_98952425_98953400_98953498_98955631_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98987583_98987771_99004336_99004430_99022043
ES_00060620	chr9	-	1391	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-248	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2302	False	NA	28	True	ATTAAA	-15	NA	99302453	99270031	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
ES_00060621	chr9	-	2785	11	FSM	ENSMUSG00000032468.12	ENSMUST00000186049.2	2761	11	18	-42	0	42	multi-exon	FALSE	canonical	3	18	junction_10	66.7805360864975	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGATGGGATTATGTA	NA	False	NA	41	True	GATAAA	-21	NA	99450702	99400814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
ES_00060622	chr9	-	628	1	FSM	ENSMUSG00000099631.2	ENSMUST00000186995.2	826	1	89	109	89	-109	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGCTTTTGTTGCCAT	NA	False	NA	NA	False	NA	NA	NA	99829353	99828725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_99828700_99829400
ES_00060623	chr9	-	2532	14	ISM	ENSMUSG00000032534.19	ENSMUST00000216281.2	1791	15	1736	-167	1736	0	3prime_fragment	FALSE	canonical	1	2	junction_13	39.2131182010976	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACATGAATGTTTATTA	NA	False	NA	-10	True	AATAAA	-17	NA	102501444	102463885	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102498894_102498928_102500754
ES_00060625	chr9	-	1851	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.1596624119289	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_103066666_103066812_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ES_00060626	chr9	-	3166	6	FSM	ENSMUSG00000032553.15	ENSMUST00000163567.8	3166	6	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	17.6476627347646	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_103067621_103068267_103068323_103069411_103069549_103074736_103076066_103078485_103078581_103079110
ES_00060637	chr9	-	746	1	FSM	ENSMUSG00000101597.3	ENSMUST00000187303.3	640	1	-43	-63	-43	63	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCGCTTAAAAAAATACT	NA	False	NA	NA	False	AATAAA	-11	NA	105438003	105437257	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_105437300_105438000
ES_00060638	chr9	-	1442	11	NIC	ENSMUSG00000020253.16	novel	1846	10	NA	NA	27	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	37.3310862418977	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTCTTTTCTCTCTC	3870	False	NA	-9	True	NA	NA	NA	106076447	106072154	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_106072225_106072596_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106074539_106074940_106075196_106075299_106075424_106076168
ES_00060640	chr9	-	1467	14	FSM	ENSMUSG00000023262.14	ENSMUST00000190851.3	1467	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	60.7556946949817	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315374	106310179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
ES_00060641	chr9	-	1259	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.56165113888	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324875	106317249	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324729
ES_00060642	chr9	-	1579	1	FSM	ENSMUSG00000091735.3	ENSMUST00000164834.3	1977	1	-15	413	-15	-413	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAAGAACTCACAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	106343152	106341573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106341600_106343200
ES_00060643	chr9	-	614	2	FSM	ENSMUSG00000023249.16	ENSMUST00000139362.2	667	2	53	0	53	0	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAAATAACGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	106349164	106348193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106348602_106348958
ES_00060645	chr9	-	868	5	NNC	ENSMUSG00000032575.17	novel	2247	4	NA	NA	0	-8712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	349.202931688725	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGACTTCACATCTAAG	NA	False	NA	NA	False	NA	NA	NA	106769114	106755108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_106755138_106765957_106766425_106767359_106767502_106768269_106768398_106769012
ES_00060646	chr9	-	263	4	FSM	ENSMUSG00000039716.13	ENSMUST00000166152.2	263	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.24721912892465	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATACCCCCCCGGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	106778978	106773974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106774018_106774533_106774657_106777905_106777994_106778969
ES_00060649	chr9	-	2708	11	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_10	45.4053961550827	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGATTCCTGGGTTTCT	NA	False	NA	-8	True	AATAAA	-18	NA	107166978	107132131	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166727
ES_00060650	chr9	-	785	4	FSM	ENSMUSG00000032579.15	ENSMUST00000194260.2	700	4	-65	-20	-65	0	multi-exon	FALSE	canonical	3	184	junction_2	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGTTATTAACATTCA	NA	False	NA	-12	True	AATAAA	-12	NA	107206716	107204890	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522
ES_00060652	chr9	-	2203	10	NNC	ENSMUSG00000032562.14	novel	2215	9	NA	NA	0	40956	intron_retention	FALSE	non_canonical	0	0	junction_1	421.366325478097	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGAAATGCTGCTCTA	4803	False	NA	NA	False	NA	NA	NA	107512533	107450367	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_107450398_107491332_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ES_00060653	chr9	-	3540	21	FSM	ENSMUSG00000057969.16	ENSMUST00000102530.8	3410	21	6	-136	0	0	multi-exon	FALSE	canonical	0	0	junction_18	19.0711824489202	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGCTGGTTCCAGTGAG	4367	False	NA	-2	True	ATTAAA	-15	NA	107486392	107475415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483748_107484134_107484232_107484292_107486319
ES_00060654	chr9	-	3191	20	FSM	ENSMUSG00000057969.16	ENSMUST00000102532.10	3191	20	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_18	17.1961150028469	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGCTGGTTCCAGTGAG	4331	False	NA	-2	True	ATTAAA	-15	NA	107486428	107475415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107484232_107484292_107486319
ES_00060655	chr9	-	2383	18	FSM	ENSMUSG00000034684.13	ENSMUST00000192727.6	2383	18	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_14	4.95725674780597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGCCTGCATAGGACCAG	NA	False	NA	NA	False	NA	NA	NA	107582755	107559616	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107560039_107560758_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107566979_107568554_107568648_107569366_107569487_107569587_107569651_107569754_107569916_107582629
ES_00060657	chr9	-	2510	17	NIC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	40	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	115.590873342146	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7652	False	NA	NA	False	AATAAA	-18	NA	107749881	107650761	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749401
ES_00060660	chr9	-	3525	6	FSM	ENSMUSG00000032582.15	ENSMUST00000182301.7	3527	6	0	2	0	-2	multi-exon	FALSE	canonical	3	125	junction_4	70.7740065278206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	7590	False	NA	NA	False	NA	NA	NA	107749943	107708827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
ES_00060662	chr9	-	3783	35	ISM	ENSMUSG00000041528.16	ENSMUST00000160649.8	3919	37	57	3664	-13	1	5prime_fragment	FALSE	canonical	3	35	junction_13	14.6132671861795	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGGTGATGTGTAAACT	NA	False	NA	NA	False	AATGAA	-36	NA	107956517	107933096	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956467
ES_00060663	chr9	-	2308	22	FSM	ENSMUSG00000032590.15	ENSMUST00000081309.13	2308	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	42.2648489920106	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	False	NA	-32	True	AATAAA	-14	NA	107971640	107962611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964258_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
ES_00060664	chr9	-	2448	21	ISM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	144	1	4	0	intron_retention	FALSE	canonical	3	143	junction_17	21.0653744329409	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTCTGTGCTGGTACT	NA	False	NA	-33	True	AATAAA	-13	NA	107971661	107962612	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425
ES_00060672	chr9	-	852	3	FSM	ENSMUSG00000070283.5	ENSMUST00000193242.2	852	3	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	48.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCTCTTACATATTTT	8667	False	NA	-18	True	NA	NA	NA	108444109	108443075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_108443275_108443357_108443951_108444049
ES_00060677	chr9	-	4485	18	FSM	ENSMUSG00000032480.18	ENSMUST00000198026.5	4574	18	93	-4	93	3	multi-exon	FALSE	canonical	3	293	junction_17	74.9604740137085	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTCCTCCCAAGGGCT	NA	False	NA	2	True	AATAAA	-24	NA	109938970	109913384	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093
ES_00060684	chr9	-	577	8	FSM	ENSMUSG00000032507.16	ENSMUST00000127352.8	615	8	38	0	-7	0	multi-exon	FALSE	canonical	2	4	junction_1	10.9115179736733	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCAGATCACAAAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	113855804	113818461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_113818543_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
ES_00060687	chr9	-	2761	20	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.868702168926	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGAAGGTATGCAGAGGA	NA	False	NA	NA	False	AGTAAA	-21	NA	114469166	114414308	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_114414454_114415170_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00060688	chr9	-	4866	15	FSM	ENSMUSG00000056167.9	ENSMUST00000217296.2	4866	15	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_3	61.1176934199876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAATAAAGATGTAA	NA	False	NA	NA	False	NA	NA	NA	114469166	114424904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ES_00060694	chr9	-	570	2	Genic_Genomic	ENSMUSG00000080848.4	novel	472	1	NA	NA	0	60645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTGAGGAACCAATCAC	NA	False	NA	NA	False	NA	NA	NA	115870132	115809015	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_115809052_115869598
ES_00060695	chr9	-	574	2	Genic_Genomic	ENSMUSG00000080848.4	novel	472	1	NA	NA	0	60647	multi-exon	FALSE	non_canonical	0	0	junction_1	0	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAGGAACCAATCACTG	NA	False	NA	NA	False	NA	NA	NA	115870132	115809013	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_115809054_115869598
ES_00060696	chr9	-	573	2	Genic_Genomic	ENSMUSG00000080848.4	novel	472	1	NA	NA	0	60647	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAGGAACCAATCACTG	NA	False	NA	NA	False	NA	NA	NA	115870132	115809013	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_115809053_115869598
ES_00060701	chr9	-	4366	18	NNC	ENSMUSG00000036737.13	novel	4647	18	NA	NA	186	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	108.854399437122	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCATTTATTTATTTAT	5863	False	NA	48	True	AATAAA	-30	NA	119151202	119067496	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_119070283_119070776_119070842_119071785_119071855_119073721_119073775_119074607_119074673_119076047_119076195_119080254_119080291_119083828_119083952_119088267_119088334_119089115_119089165_119093815_119093950_119094531_119094650_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119133870_119133984_119151070
ES_00060716	chr9	-	395	3	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	0	626	0	-626	5prime_fragment	FALSE	canonical	3	93	junction_2	20	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGTCAGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	124044769	124033613	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_124033817_124033999_124034127_124044704
ES_00060719	chr9	+	2762	1	Intergenic	novelGene_4035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCAACAAAACCAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	4287226	4289988	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_4287200_4290000
ES_00060720	chr9	+	816	1	Intergenic	novelGene_4038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTAACAACCGAAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	5064412	5065228	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5064400_5065200
ES_00060721	chr9	+	202	1	Intergenic	novelGene_4039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCCCACCCCAGCTACA	NA	False	NA	NA	False	NA	NA	NA	5065731	5065933	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5065700_5065900
ES_00060722	chr9	+	222	1	Intergenic	novelGene_4041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATTGTTAGGGGCTCTT	NA	False	NA	NA	False	NA	NA	NA	5067662	5067884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5067700_5067900
ES_00060723	chr9	+	321	1	Intergenic	novelGene_4049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTTAAAATATTTGG	NA	False	NA	NA	False	NA	NA	NA	7496966	7497287	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7497000_7497300
ES_00060724	chr9	+	1025	1	Intergenic	novelGene_4050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTAAGCCATATAAACTCG	665	False	NA	NA	False	AATAAA	-28	NA	7723740	7724765	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7723700_7724800
ES_00060725	chr9	+	772	1	Intergenic	novelGene_4055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTGGGCCAAAGCAACCCG	6686	False	NA	NA	False	NA	NA	NA	7799990	7800762	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7800000_7800800
ES_00060726	chr9	+	657	1	Intergenic	novelGene_4057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAATAACTAGTTGAC	8303	False	NA	NA	False	NA	NA	NA	7801607	7802264	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7801600_7802300
ES_00060727	chr9	+	598	1	Intergenic	novelGene_4060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTGTAGTAGTTCACAA	NA	False	NA	NA	False	AATACA	-16	NA	7991836	7992434	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7991800_7992400
ES_00060728	chr9	+	275	1	Intergenic	novelGene_4063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAATTTAGCATCAACTAG	NA	False	NA	NA	False	NA	NA	NA	11951162	11951437	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_11951200_11951400
ES_00060729	chr9	+	385	1	Intergenic	novelGene_4069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACATGGGCCAACGATTG	NA	False	NA	NA	False	NA	NA	NA	19517160	19517545	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_19517200_19517500
ES_00060730	chr9	+	319	1	Intergenic	novelGene_4075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGGTCAGATCTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	21074498	21074817	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_21074500_21074800
ES_00060731	chr9	+	201	1	Intergenic	novelGene_4077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCCTTTTATAGTCTTA	7436	False	NA	NA	False	NA	NA	NA	21175390	21175591	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_21175400_21175600
ES_00060733	chr9	+	214	1	Intergenic	novelGene_4090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACGACCTCTTAACAAA	NA	False	NA	NA	False	NA	NA	NA	26876501	26876715	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_26876500_26876700
ES_00060734	chr9	+	209	1	Intergenic	novelGene_4097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCTTAACTGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	32009977	32010186	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_32010000_32010200
ES_00060737	chr9	+	210	1	Intergenic	novelGene_4111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	942	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGAAACATGCTCCACTA	2510	False	NA	NA	False	NA	NA	NA	40150670	40150880	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_40150700_40150900
ES_00060738	chr9	+	236	1	Intergenic	novelGene_4115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTGCTCTTAGGTGCT	NA	False	NA	NA	False	NA	NA	NA	43033175	43033411	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_43033200_43033400
ES_00060739	chr9	+	318	1	Intergenic	novelGene_4121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGTGATAGCTTTACTT	8299	False	NA	NA	False	NA	NA	NA	44649652	44649970	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_44649700_44650000
ES_00060740	chr9	+	205	1	Intergenic	novelGene_4123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGCATTAAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45741813	45742018	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_45741800_45742000
ES_00060742	chr9	+	250	1	Intergenic	novelGene_4127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACTTACATATAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	48373411	48373661	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_48373400_48373700
ES_00060744	chr9	+	715	1	Intergenic	novelGene_4132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAATGTTTTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	50540170	50540885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50540200_50540900
ES_00060745	chr9	+	234	1	Intergenic	novelGene_4133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAAAATTTTCTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	50540978	50541212	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50541000_50541200
ES_00060746	chr9	+	207	1	Intergenic	novelGene_4137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTAGGATTTCTATTCCT	NA	False	NA	NA	False	NA	NA	NA	50957699	50957906	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50957700_50957900
ES_00060747	chr9	+	270	1	Intergenic	novelGene_4149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCATCTCACCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	56896181	56896451	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_56896200_56896500
ES_00060748	chr9	+	216	1	Intergenic	novelGene_4150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	678	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCAAAGTGTAATAAAATG	7543	False	NA	NA	False	NA	NA	NA	56945369	56945585	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_56945400_56945600
ES_00060749	chr9	+	1178	1	Intergenic	novelGene_4153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAATTTTTTGGCCCCC	NA	False	NA	NA	False	NA	NA	NA	57384461	57385639	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_57384500_57385600
ES_00060750	chr9	+	2270	1	Intergenic	novelGene_4155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAACTTTCCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	57414861	57417131	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_57414900_57417100
ES_00060751	chr9	+	203	1	Intergenic	novelGene_4156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	538	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAATTCAAGCT	NA	False	NA	NA	False	NA	NA	NA	57557047	57557250	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_57557000_57557200
ES_00060753	chr9	+	212	1	Intergenic	novelGene_4163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATCTTGAAATGAAGACA	NA	False	NA	NA	False	NA	NA	NA	62697892	62698104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_62697900_62698100
ES_00060754	chr9	+	205	1	Intergenic	novelGene_4164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGACATTCTTATTGT	NA	False	NA	NA	False	NA	NA	NA	62731730	62731935	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_62731700_62731900
ES_00060755	chr9	+	228	1	Intergenic	novelGene_4167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGGGTATTTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	62990575	62990803	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_62990600_62990800
ES_00060756	chr9	+	206	1	Intergenic	novelGene_4172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACTTAGGGCAGTAAA	NA	False	NA	NA	False	NA	NA	NA	64151849	64152055	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_64151800_64152100
ES_00060757	chr9	+	222	1	Intergenic	novelGene_4174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGTTTGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	64648857	64649079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_64648900_64649100
ES_00060758	chr9	+	226	1	Intergenic	novelGene_4175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTCTGTAGGTGCTGCA	NA	False	NA	NA	False	NA	NA	NA	64672696	64672922	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_64672700_64672900
ES_00060759	chr9	+	205	1	Intergenic	novelGene_4180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	361	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACCCAACTCTTAATGG	NA	False	NA	NA	False	NA	NA	NA	65522915	65523120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_65522900_65523100
ES_00060760	chr9	+	204	1	Intergenic	novelGene_4182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	498	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTCATTCCCTCTGAA	NA	False	NA	NA	False	NA	NA	NA	65954305	65954509	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_65954300_65954500
ES_00060761	chr9	+	208	1	Intergenic	novelGene_4194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCACTTACCTATTAGTT	NA	False	NA	34	True	NA	NA	NA	72425159	72425367	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_72425200_72425400
ES_00060763	chr9	+	211	1	Intergenic	novelGene_4201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTTCAAATTAATTTAGC	726	False	NA	NA	False	NA	NA	NA	75339075	75339286	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_75339100_75339300
ES_00060765	chr9	+	203	1	Intergenic	novelGene_4220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	406	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTCTCTCCTACAAGTCC	1336	False	NA	NA	False	NA	NA	NA	85846935	85847138	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_85846900_85847100
ES_00060766	chr9	+	211	1	Intergenic	novelGene_4225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTTCCCTTCCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	96069523	96069734	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_96069500_96069700
ES_00060767	chr9	+	205	1	Intergenic	novelGene_4228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTATTGGATGCTTCGAT	NA	False	NA	NA	False	NA	NA	NA	96952331	96952536	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_96952300_96952500
ES_00060768	chr9	+	253	1	Intergenic	novelGene_4229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	386	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTGTTTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	97047021	97047274	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_97047000_97047300
ES_00060769	chr9	+	239	1	Intergenic	novelGene_4231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCCCCCTGAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	98002932	98003171	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_98002900_98003200
ES_00060770	chr9	+	209	1	Intergenic	novelGene_4236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14594	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGCAACAAGGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	102073572	102073781	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_102073600_102073800
ES_00060771	chr9	+	233	1	Intergenic	novelGene_4237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCCCCAAAACACACACCA	NA	False	NA	NA	False	NA	NA	NA	102677026	102677259	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_102677000_102677300
ES_00060772	chr9	+	227	1	Intergenic	novelGene_4242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2097	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTATAGTTTTGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	106046170	106046397	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_106046200_106046400
ES_00060773	chr9	+	1798	1	Intergenic	novelGene_4243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1906	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCCTACTGCAGCTA	NA	False	NA	NA	False	ATTAAA	-19	NA	106068391	106070189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_106068400_106070200
ES_00060775	chr9	+	217	1	Intergenic	novelGene_4245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCAACGACATATCTGTA	4395	False	NA	NA	False	NA	NA	NA	107660334	107660551	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_107660300_107660600
ES_00060776	chr9	+	206	1	Intergenic	novelGene_4247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGCATTCCTGGTACCC	7538	False	NA	NA	False	NA	NA	NA	107663477	107663683	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_107663500_107663700
ES_00060790	chr9	+	693	2	Intergenic	novelGene_4030	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCATGGCCAGAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	3258511	3259376	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_3258612_3258783
ES_00060791	chr9	+	591	1	Intergenic	novelGene_4031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCATGGCCAGAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	3258785	3259376	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_3258800_3259400
ES_00060792	chr9	+	2897	5	FSM	ENSMUSG00000041624.11	ENSMUST00000213060.2	2897	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	5.59016994374947	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAGAGAAAGA	134	False	NA	NA	False	AATATA	-21	NA	3532887	3761177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_3533100_3579517_3579580_3582578_3582701_3634438_3635158_3759395
ES_00060793	chr9	+	2243	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	-2	72	0	-72	multi-exon	TRUE	canonical	3	18	junction_1	18.4571575998762	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTTCAATAATCCAGATT	-2	True	NA	NA	False	TATAAA	-3	NA	4309832	4331639	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
ES_00060794	chr9	+	2851	3	NNC	ENSMUSG00000041124.12	novel	2731	2	NA	NA	-1898	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	53.5	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAAATTTTCCTGTCT	5070	False	NA	5	True	ATTAAA	-13	NA	4381636	4386861	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_4381759_4383536_4384143_4384738
ES_00060795	chr9	+	2093	1	Intergenic	novelGene_4045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATCATTTAGACAACGAA	NA	False	NA	NA	False	NA	NA	NA	5550646	5552739	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_5550600_5552700
ES_00060796	chr9	+	1159	7	FSM	ENSMUSG00000032002.11	ENSMUST00000034499.10	1122	7	-37	0	-6	0	multi-exon	FALSE	canonical	3	18	junction_6	367.438165621857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCCGTTGAGTGTCA	NA	False	NA	24	True	AATAAA	-32	NA	7184513	7207040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7206719
ES_00060797	chr9	+	3000	13	FSM	ENSMUSG00000031997.10	ENSMUST00000050433.8	3259	13	252	7	151	4	multi-exon	FALSE	canonical	0	0	junction_1	0.276385399196283	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTGATAATGCTGAACA	152	False	NA	NA	False	ATTAAA	-21	NA	8544394	8680735	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_8544600_8609700_8610476_8626593_8626777_8634047_8634213_8643506_8643724_8649298_8649533_8652936_8653202_8655177_8655374_8656542_8656747_8658303_8658379_8677924_8678009_8679468_8679545_8680414
ES_00060798	chr9	+	3311	4	FSM	ENSMUSG00000031870.17	ENSMUST00000151080.2	3897	4	0	586	0	-586	multi-exon	FALSE	canonical	3	5	junction_1	0.471404520791032	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAGACTACCCAGCTTTT	2	True	NA	NA	False	NA	NA	NA	8900419	8948022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_8902085_8903596_8903749_8922599_8922717_8946645
ES_00060799	chr9	+	3778	1	Genic_Genomic	ENSMUSG00000031925.18	novel	NA	NA	NA	NA	43156	5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATTCAGAAGTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	13616911	13620689	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_+_13616900_13620700
ES_00060800	chr9	+	3832	16	NNC	ENSMUSG00000031918.17	novel	3088	16	NA	NA	4	2266	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_15	101.361311926965	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAACGACCGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	13660496	13720043	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_13660697_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670_13718567_13719997
ES_00060802	chr9	+	3872	12	NNC	ENSMUSG00000037808.14	novel	3760	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_9	66.2421054083097	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739030	13757837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13742929_13743064_13744267_13744468_13747180_13747229_13747398_13747480_13747954_13748013_13748135_13748269_13750935_13751038_13755324
ES_00060804	chr9	+	862	7	FSM	ENSMUSG00000031928.16	ENSMUST00000147305.2	793	7	-69	0	-21	0	multi-exon	FALSE	canonical	3	118	junction_1	68.7305528050582	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAGATGAGAACTCATG	NA	False	NA	NA	False	AATAAA	-22	NA	14695928	14710916	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851
ES_00060807	chr9	+	502	5	FSM	ENSMUSG00000031939.17	ENSMUST00000216768.2	502	5	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	22.8144690930997	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTATTTTGGGTCTGGA	NA	False	NA	20	True	NA	NA	NA	15224096	15228287	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_15224133_15225285_15225561_15226397_15226428_15226678_15226737_15228184
ES_00060808	chr9	+	1253	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	-79	-322	-79	322	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGGAAAAGGACATCTGAA	NA	False	NA	4	True	AATAAA	-33	NA	16941261	16942514	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_16941300_16942500
ES_00060809	chr9	+	5615	11	NNC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	281.375922921632	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTTAAGAGTCTGTGG	8540	False	NA	NA	False	ATTAAA	-22	NA	18203595	18228738	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221233_18223204_18223328_18223725_18223789_18224073
ES_00060810	chr9	+	4079	8	NNC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-131	0	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_3	84.972984902646	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533266	19561027	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553283_19553400_19553893_19554021_19554904_19555001_19556507_19556604_19557997
ES_00060811	chr9	+	539	2	Genic_Genomic	ENSMUSG00000051118.10	novel	9649	3	NA	NA	-47494	-801	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTAGACTTTCAACCA	NA	False	NA	NA	False	NA	NA	NA	19780666	19839619	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_+_19780716_19839129
ES_00060812	chr9	+	489	6	FSM	ENSMUSG00000084786.10	ENSMUST00000160682.8	489	6	0	0	0	0	multi-exon	FALSE	canonical	1	35	junction_1	424.4820844276	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20555366	20558073	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_20555435_20556119_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ES_00060814	chr9	+	6122	21	NNC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_19	554.662771420617	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCCGCTGAATGTAGAT	NA	False	NA	76	True	NA	NA	NA	21279166	21316617	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747_21314687_21315355_21315488_21315991
ES_00060815	chr9	+	3374	21	FSM	ENSMUSG00000032178.15	ENSMUST00000213603.2	3430	21	56	0	56	0	multi-exon	FALSE	canonical	1	6	junction_1	559.175831022765	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCCGCTGAATGTAGAT	NA	False	NA	76	True	NA	NA	NA	21284824	21316617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_21284879_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ES_00060816	chr9	+	2791	21	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	0	-272	combination_of_known_junctions	FALSE	canonical	2	156	junction_20	136.611712528612	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGGCTGCCCTGGCTT	5842	False	NA	NA	False	NA	NA	NA	21336203	21418778	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ES_00060818	chr9	+	5548	34	NNC	ENSMUSG00000032187.17	novel	6376	34	NA	NA	-39	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_28	170.100461862405	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1198	False	NA	22	True	AATAAA	-19	NA	21527425	21614662	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566925_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590443_21597307_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ES_00060819	chr9	+	437	1	FSM	ENSMUSG00000111446.2	ENSMUST00000214545.2	260	1	-10	-167	-10	167	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTTGCACCCACTAG	363	False	NA	NA	False	NA	NA	NA	22003798	22004235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22003800_22004200
ES_00060820	chr9	+	841	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	-132	-33	-32	0	multi-exon	FALSE	canonical	3	126	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068109	22069654	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22068324_22069027
ES_00060821	chr9	+	2897	3	FSM	ENSMUSG00000074472.11	ENSMUST00000091508.5	1395	3	0	-1502	0	3	multi-exon	FALSE	canonical	1	2	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTATGTGTTTGTGTGT	256	False	NA	NA	False	ATTAAA	-20	NA	22108362	22113422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22108490_22108670_22108732_22110713
ES_00060822	chr9	+	999	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	-28	-374	-19	-338	multi-exon	FALSE	canonical	3	166	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCTGTGGTCATGGTG	721	False	NA	NA	False	NA	NA	NA	22136990	22147176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22137129_22146315
ES_00060823	chr9	+	2718	1	FSM	ENSMUSG00000111424.2	ENSMUST00000213592.2	2325	1	97	-490	97	490	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGTCTGTTTAAGTAAT	4101	False	NA	NA	False	NA	NA	NA	22140370	22143088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_22140400_22143100
ES_00060824	chr9	+	3465	15	FSM	ENSMUSG00000031963.9	ENSMUST00000071982.7	3791	15	326	0	116	0	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACAGTTTTCAATTCCT	NA	False	NA	NA	False	AATAAA	-16	NA	23134697	23396496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_23135070_23136053_23136140_23165667_23165768_23204700_23204784_23208501_23208593_23212235_23212319_23277487_23277588_23285128_23285239_23286861_23287003_23288933_23289039_23292724_23292771_23310645_23310976_23317790_23318128_23384741_23384873_23395146
ES_00060826	chr9	+	948	6	NIC	ENSMUSG00000035443.11	novel	918	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	323	junction_5	122.182486470034	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911021	26918630	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ES_00060827	chr9	+	2874	15	FSM	ENSMUSG00000034275.19	ENSMUST00000115247.8	2857	15	-17	0	7	0	multi-exon	FALSE	canonical	2	4	junction_12	6.52311431818907	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTCCATTTATCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	27210506	27241431	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912_27234054_27234139_27234257_27234504_27234656_27235472_27235585_27238141_27238318_27239775_27240003_27240834
ES_00060829	chr9	+	2038	6	FSM	ENSMUSG00000031993.8	ENSMUST00000216545.2	970	6	0	-1068	0	-985	multi-exon	FALSE	canonical	2	4	junction_4	14.9666295470958	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTGTGAAATTGTTTTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	30347152	30377037	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30374515_30374604_30375581
ES_00060830	chr9	+	9096	6	NNC	ENSMUSG00000047412.17	novel	8861	6	NA	NA	-284	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_3	121.155107197344	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGTTGTTGTCATTG	NA	False	NA	83	True	ATTAAA	-28	NA	30941655	30987181	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_30942255_30964535_30965610_30973336_30973422_30975525_30975639_30977954_30978039_30980040
ES_00060833	chr9	+	2903	1	FSM	ENSMUSG00000081343.2	ENSMUST00000119589.2	793	1	-2032	-78	-2032	78	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGACGCCGGGC	NA	False	NA	NA	False	NA	NA	NA	31003465	31006368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_31003500_31006400
ES_00060834	chr9	+	202	2	NNC	ENSMUSG00000042496.19	novel	3064	5	NA	NA	-21	-18999	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGGACATTTTTAACGC	NA	False	NA	NA	False	NA	NA	NA	31226001	31270840	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_31226036_31270672
ES_00060835	chr9	+	205	1	Intergenic	novelGene_4095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAAAAAGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	31295330	31295535	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_31295300_31295500
ES_00060836	chr9	+	10561	21	NNC	ENSMUSG00000041444.15	novel	540	6	NA	NA	-83535	524	intron_retention	TRUE	canonical	2	12	junction_1	7.14055319985784	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTATGTGTTTCCTTTT	NA	False	NA	19	True	NA	NA	NA	31943896	32176065	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_31944029_32040865_32040975_32063217_32063310_32064335_32064421_32081385_32081473_32093137_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479_32119562_32150557_32150708_32156447_32156551_32157213_32157359_32157742_32157826_32158403_32158512_32158781_32158928_32159675_32159872_32161937_32162084_32165362_32165435_32166469_32168995_32170197
ES_00060837	chr9	+	4771	8	ISM	ENSMUSG00000038119.16	ENSMUST00000042842.6	7213	19	25940	-2	20538	1	3prime_fragment	FALSE	canonical	2	6	junction_6	3.85449644663773	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCCTGTGAAGAGGGATAC	NA	False	NA	19	True	ATTAAA	-25	NA	35389311	35418949	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_35389429_35389879_35389986_35394393_35394517_35398045_35398268_35400270_35400537_35403140_35403221_35414455_35414716_35415352
ES_00060838	chr9	+	5566	1	FSM	ENSMUSG00000111681.2	ENSMUST00000216704.2	2882	1	-1824	-860	-1824	860	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCTCTGTAAATGTAAAA	NA	False	NA	NA	False	NA	NA	NA	37178758	37184324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37178800_37184300
ES_00060840	chr9	+	446	4	FSM	ENSMUSG00000001943.9	ENSMUST00000213502.2	501	4	55	0	55	0	multi-exon	FALSE	canonical	2	5	junction_3	1.24721912892465	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTGAGCAAGCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	37452622	37455327	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_37452782_37453650_37453771_37453884_37454030_37455305
ES_00060841	chr9	+	2689	3	FSM	ENSMUSG00000052058.4	ENSMUST00000216644.2	2731	3	42	0	42	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAACCTGTGACTAGTT	NA	False	NA	NA	False	NA	NA	NA	38340796	38343978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_38340974_38341246_38341343_38341562
ES_00060842	chr9	+	204	2	Intergenic	novelGene_4108	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGGAATGTTAATAGGA	NA	False	NA	NA	False	NA	NA	NA	39764183	39783996	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_39764211_39783819
ES_00060843	chr9	+	968	7	FSM	ENSMUSG00000032123.6	ENSMUST00000213461.2	997	7	29	0	29	0	multi-exon	FALSE	canonical	2	4	junction_1	96.4745216797333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTATTCAATTTCCTCT	3522	False	NA	NA	False	NA	NA	NA	44237889	44243314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44238117_44238442_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200
ES_00060844	chr9	+	6143	15	NNC	ENSMUSG00000032097.11	novel	6029	14	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	11.2161054028644	221	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44516168	44552028	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_44516250_44518244_44518335_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ES_00060845	chr9	+	205	1	Intergenic	novelGene_4122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGCTGCTTCTTAAAGT	6062	False	NA	NA	False	NA	NA	NA	44679298	44679503	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_44679300_44679500
ES_00060846	chr9	+	786	8	FSM	ENSMUSG00000002031.14	ENSMUST00000214854.3	778	8	-8	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	68.4811906247822	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCCCCTGCAACTGTGC	NA	False	NA	NA	False	NA	NA	NA	44684350	44697682	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44684471_44684984_44685082_44689890_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590
ES_00060847	chr9	+	1317	11	FSM	ENSMUSG00000002031.14	ENSMUST00000118186.2	1317	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	58.6055458126618	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCTCATTAGTGTC	NA	False	NA	10	True	AATACA	-19	NA	44687673	44702192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44687735_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ES_00060849	chr9	+	882	1	FSM	ENSMUSG00000111241.2	ENSMUST00000215720.2	1022	1	181	-41	181	41	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAGTTGACAATAATCCT	NA	False	NA	NA	False	NA	NA	NA	44867193	44868075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_44867200_44868100
ES_00060850	chr9	+	1781	3	ISM	ENSMUSG00000037129.8	ENSMUST00000034597.8	3245	13	25923	-4	25923	4	3prime_fragment	FALSE	canonical	0	0	junction_1	5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGGTGCTTCATTGAT	9935	False	NA	NA	False	AATAAA	-20	NA	45256320	45258883	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_45256355_45256523_45256677_45257289
ES_00060851	chr9	+	711	6	FSM	ENSMUSG00000059412.8	ENSMUST00000213158.2	711	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	87.0461946325053	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45317222	45321576	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45317465_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ES_00060852	chr9	+	227	1	FSM	ENSMUSG00000111521.2	ENSMUST00000213634.2	2327	1	522	1578	407	-1578	mono-exon	FALSE	NA	NA	NA	NA	NA	449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCCATCGTTTTTGGTC	815	False	NA	NA	False	CATAAA	-21	NA	45841931	45842158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_45841900_45842200
ES_00060853	chr9	+	2330	13	FSM	ENSMUSG00000034135.16	ENSMUST00000122865.2	2330	13	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_8	9.83898142876363	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCGGGGAAACTGTGGG	NA	False	NA	6	True	AATAAA	-14	NA	46034534	46114183	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
ES_00060854	chr9	+	5465	21	FSM	ENSMUSG00000034135.16	ENSMUST00000153152.2	5465	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	33.4099910206513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGATATGTTGTTTGCCT	NA	False	NA	17	True	AATAAA	-19	NA	46066676	46135486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297_46113369_46119219_46119371_46120015_46120142_46120361_46120448_46120852_46120963_46121773_46122114_46123147_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
ES_00060855	chr9	+	1159	1	FSM	ENSMUSG00000063543.6	ENSMUST00000165252.3	384	1	0	-775	0	775	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAACTAAAGGTAAAAGCC	NA	False	NA	NA	False	AATAAA	-31	NA	48361699	48362858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_48361700_48362900
ES_00060856	chr9	+	249	1	Intergenic	novelGene_4128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCTGTGAGAAAAGTCC	NA	False	NA	NA	False	NA	NA	NA	48955037	48955286	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_48955000_48955300
ES_00060857	chr9	+	1117	4	FSM	ENSMUSG00000032060.11	ENSMUST00000217475.2	1117	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.40870359029762	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50662624	50667936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_50662877_50664380_50664778_50665811_50665935_50667591
ES_00060858	chr9	+	521	2	FSM	ENSMUSG00000032060.11	ENSMUST00000216393.2	585	2	64	0	64	0	multi-exon	FALSE	canonical	3	19	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50665758	50667936	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_50665935_50667591
ES_00060859	chr9	+	332	2	FSM	ENSMUSG00000032058.15	ENSMUST00000176414.2	547	2	0	215	0	-215	multi-exon	FALSE	canonical	3	622	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATCTAGAATCCGGGC	NA	False	NA	NA	False	NA	NA	NA	50789384	50790221	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_50789493_50789997
ES_00060862	chr9	+	5622	21	NIC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	-71	0	combination_of_known_splicesites	TRUE	canonical	3	11	junction_4	64.8093164599041	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	2555	False	NA	14	True	AATAAA	-19	NA	54771001	54819814	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ES_00060864	chr9	+	3670	13	NNC	ENSMUSG00000032307.17	novel	3456	13	NA	NA	-204	0	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_5	237.121276987115	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCACCTTTCCCTCTT	NA	False	NA	10	True	AATAAA	-18	NA	55055933	55114813	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087908_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
ES_00060865	chr9	+	468	2	FSM	ENSMUSG00000032318.13	ENSMUST00000165302.2	529	2	61	0	61	0	multi-exon	FALSE	canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAACAAGCGTTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	55449680	55451564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_55449944_55451359
ES_00060866	chr9	+	6741	22	NNC	ENSMUSG00000042557.15	novel	4899	21	NA	NA	-28	1735	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	101.326396110554	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTATTATTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	56979295	57037385	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56979348_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008400_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00060867	chr9	+	4987	21	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	94.3175487382915	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56979365	57035648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56979501_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025456_57026376_57026472_57032452_57032661_57034431
ES_00060868	chr9	+	5345	21	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	-1569	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	74.3763907432997	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56981052	57035648	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_56981555_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ES_00060870	chr9	+	879	6	NNC	ENSMUSG00000000088.8	novel	645	5	NA	NA	-708	2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	3648.63335510709	1866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTCTTGTGATGTTGTCT	NA	False	NA	24	True	AATAAA	-24	NA	57427848	57439711	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_57427870_57428350_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
ES_00060871	chr9	+	3320	5	NNC	ENSMUSG00000032305.16	novel	3017	5	NA	NA	0	360	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	22.8582589013249	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTGCTGAATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	57444899	57450827	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447940
ES_00060873	chr9	+	1512	12	NIC	ENSMUSG00000055720.11	novel	1426	11	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	95.7810002035894	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818339	57837249	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_57818455_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ES_00060875	chr9	+	1540	2	FSM	ENSMUSG00000066607.6	ENSMUST00000216294.2	1601	2	61	0	61	0	multi-exon	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGGGGCCCACAGGCC	NA	False	NA	NA	False	AATAAA	-17	NA	58396951	58407063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_58397676_58406247
ES_00060876	chr9	+	2655	23	NIC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	12.3533546820621	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATATGATCACTGTGGT	NA	False	NA	24	True	AATAAA	-18	NA	59524545	59557563	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ES_00060877	chr9	+	248	1	Genic_Genomic	ENSMUSG00000025237.17	novel	NA	NA	NA	NA	-135	-3194	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGGACTAGAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	59528703	59528951	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_+_59528700_59529000
ES_00060880	chr9	+	2715	12	NIC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	19	-957	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.71251452435445	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCTCCAATGCCCATCC	1655	False	NA	NA	False	NA	NA	NA	59587445	59625200	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490
ES_00060881	chr9	+	720	1	ISM	ENSMUSG00000074259.11	ENSMUST00000128944.8	3705	12	10516	2	4037	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGGTGTAGAAGTT	7165	False	NA	NA	False	AATAAA	-18	NA	59625435	59626155	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_59625400_59626200
ES_00060882	chr9	+	3578	20	NIC	ENSMUSG00000032280.17	novel	4299	20	NA	NA	60	-7	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	48.17437164201	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGTGATCTCCTTTGAT	NA	False	NA	6	True	AATAAA	-7	NA	61280560	61325110	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309137_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ES_00060883	chr9	+	611	5	FSM	ENSMUSG00000032249.15	ENSMUST00000126451.8	617	5	6	0	6	0	multi-exon	FALSE	canonical	1	5	junction_1	236.291133985175	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGAAGAGGATGT	NA	False	NA	31	True	NA	NA	NA	62252086	62281997	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_62252170_62279001_62279152_62279343_62279467_62280766_62280960_62281935
ES_00060885	chr9	+	1142	1	Intergenic	novelGene_4162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCTGCTCTCATAATAA	NA	False	NA	NA	False	AATAAA	-21	NA	62561743	62562885	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_62561700_62562900
ES_00060886	chr9	+	827	5	FSM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	37	0	7	0	multi-exon	FALSE	canonical	1	1	junction_1	39.344631145812	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATTGGTGTTTCCCT	NA	False	NA	9	True	AATAAA	-21	NA	62765422	62783203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_62765444_62765523_62765555_62775958_62776100_62778547_62778737_62782758
ES_00060887	chr9	+	1449	1	FSM	ENSMUSG00000035337.4	ENSMUST00000039011.4	1162	1	6	-293	6	293	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAACATCATGACCAAGA	3213	False	NA	NA	False	NA	NA	NA	64142488	64143937	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64142500_64143900
ES_00060888	chr9	+	3848	25	NIC	ENSMUSG00000036466.18	novel	6680	25	NA	NA	12	-14	combination_of_known_junctions	FALSE	canonical	2	5	junction_22	7.12378157223317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATCAATGTGATGTCTC	NA	False	NA	NA	False	NA	NA	NA	64292919	64608243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64607644
ES_00060889	chr9	+	699	5	FSM	ENSMUSG00000032393.16	ENSMUST00000217328.2	699	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	56.6259657754285	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGGGTTAGCCAATAGA	NA	False	NA	-88	True	NA	NA	NA	64982284	64988177	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_64982411_64983017_64983171_64985244_64985388_64985955_64986068_64988012
ES_00060890	chr9	+	4445	10	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	26829	-3	26780	3	3prime_fragment	TRUE	canonical	3	6	junction_3	2.94811092476036	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTCTCTCTCTTTTTT	2818	False	NA	7	True	AATAAA	-15	NA	65035596	65045225	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_65035987_65036061_65036164_65037844_65038029_65038625_65038754_65038890_65039062_65039207_65039346_65040332_65040439_65040921_65041151_65041754_65041920_65042393
ES_00060892	chr9	+	203	2	Antisense	novelGene_ENSMUSG00000110913.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGATCTTGAACTTCTGA	5365	False	NA	NA	False	NA	NA	NA	65220729	65283368	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_65220763_65283198
ES_00060893	chr9	+	2563	8	FSM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	22.2545569743019	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTTGTATCCTTTGAAG	NA	False	NA	27	True	AATAAA	-28	NA	65343069	65359699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ES_00060894	chr9	+	2647	3	NIC	ENSMUSG00000041064.15	novel	3725	12	NA	NA	5104	0	intron_retention	FALSE	canonical	3	136	junction_1	12	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGTGCCTCCTGCCT	NA	False	NA	22	True	AATAAA	-12	NA	65499611	65503244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_65500885_65501668_65501861_65502062
ES_00060895	chr9	+	808	3	NIC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	1	28	combination_of_known_splicesites	FALSE	canonical	3	70	junction_1	814.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCCACTCCTGCACCC	NA	False	NA	NA	False	NA	NA	NA	65537841	65567119	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_65538180_65566416_65566487_65566719
ES_00060896	chr9	+	986	4	NIC	ENSMUSG00000040652.17	novel	700	5	NA	NA	4	-98	intron_retention	FALSE	canonical	1	1	junction_3	188.067954621609	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGTAGTGGACCTGAGC	4608	False	NA	NA	False	TTTAAA	-23	NA	65583833	65596066	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65595628
ES_00060897	chr9	+	217	2	Antisense	novelGene_ENSMUSG00000040524.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	439	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACCTGCAAATGGGGAA	NA	False	NA	NA	False	NA	NA	NA	65716088	65716981	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_65716149_65716824
ES_00060898	chr9	+	208	2	Antisense	novelGene_ENSMUSG00000032386.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTATTCTTTAAGATGT	NA	False	NA	NA	False	NA	NA	NA	65772564	65794224	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_65772595_65794046
ES_00060899	chr9	+	460	2	FSM	ENSMUSG00000040204.7	ENSMUST00000153841.2	2530	2	-184	2254	-59	-2254	multi-exon	FALSE	canonical	3	848	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGGTGGATTTATTTTTAC	NA	False	NA	NA	False	NA	NA	NA	65797459	65798176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_65797757_65798013
ES_00060900	chr9	+	12957	69	NNC	ENSMUSG00000038664.17	novel	15153	78	NA	NA	44406	1	intron_retention	FALSE	canonical	2	7	junction_7	13.5781331814076	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCCGCTGTTGTTGATC	NA	False	NA	9	True	AATAAA	-20	NA	66302213	66416058	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_66302382_66303917_66304053_66304534_66304701_66305119_66305246_66306539_66306762_66307049_66307203_66307328_66307462_66309805_66309998_66315265_66315488_66318297_66318472_66321356_66321472_66321560_66321682_66323465_66323638_66325677_66325991_66326410_66326532_66328278_66328331_66336092_66336362_66340557_66340774_66341005_66341127_66341347_66341586_66341692_66341881_66344876_66345033_66346459_66346567_66347077_66347189_66349187_66349362_66352734_66352975_66353366_66353451_66355293_66355815_66357984_66358761_66360618_66360818_66363217_66363379_66364718_66364836_66365475_66365708_66367689_66367815_66368981_66369182_66370110_66370380_66371987_66372041_66372662_66372864_66373780_66373956_66374664_66374936_66375041_66375256_66376259_66376466_66377519_66377648_66379127_66379256_66380664_66380866_66382015_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ES_00060901	chr9	+	12981	69	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	44406	-1	44406	1	3prime_fragment	FALSE	canonical	2	7	junction_7	13.6125323897607	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCCGCTGTTGTTGATC	NA	False	NA	9	True	AATAAA	-20	NA	66302213	66416058	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_66302382_66303917_66304053_66304534_66304701_66305119_66305246_66306539_66306762_66307049_66307203_66307328_66307462_66309805_66309998_66315265_66315488_66318297_66318472_66321356_66321472_66321560_66321682_66323465_66323638_66325677_66325991_66326410_66326532_66328278_66328331_66336092_66336362_66340557_66340774_66341005_66341127_66341347_66341586_66341692_66341881_66344876_66345033_66346459_66346567_66347077_66347189_66349184_66349362_66352734_66352975_66353366_66353451_66355293_66355815_66357984_66358761_66360618_66360818_66363217_66363379_66364718_66364836_66365475_66365708_66367689_66367815_66368981_66369203_66370110_66370380_66371987_66372041_66372662_66372864_66373780_66373956_66374664_66374936_66375041_66375256_66376259_66376466_66377519_66377648_66379127_66379256_66380664_66380866_66382015_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ES_00060904	chr9	+	2515	20	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	115292	-3	1900	3	3prime_fragment	FALSE	canonical	2	5	junction_1	4.6345684132108	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGGCTTGTTTTTAATT	676	False	NA	9	True	ATTAAA	-17	NA	67862969	67902923	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_67863076_67864782_67865019_67868875_67869018_67870330_67870472_67871340_67871423_67871525_67871596_67872746_67872859_67872966_67873081_67874321_67874462_67876556_67876639_67879269_67879384_67880142_67880219_67880563_67880728_67880993_67881040_67883063_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
ES_00060905	chr9	+	637	4	FSM	ENSMUSG00000033543.18	ENSMUST00000119905.8	622	4	-15	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	423.805248774586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919831	69930019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69929718
ES_00060907	chr9	+	220	2	Intergenic	novelGene_4192	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	54	junction_1	0	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTATTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	70464623	70474274	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_70464729_70474159
ES_00060908	chr9	+	426	4	FSM	ENSMUSG00000038535.18	ENSMUST00000183400.2	628	4	0	202	0	-202	multi-exon	FALSE	canonical	3	38	junction_1	9.89949493661167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGAGTTTGAGATGGG	NA	False	NA	NA	False	AATAAA	-29	NA	72182262	72206255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983
ES_00060912	chr9	+	320	2	FSM	ENSMUSG00000032216.16	ENSMUST00000184386.2	312	2	-8	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAAATGGGTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	72569763	72570581	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72569896_72570393
ES_00060913	chr9	+	1698	1	FSM	ENSMUSG00000102411.2	ENSMUST00000194508.2	2749	1	-85	1136	-85	-1136	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATTTTAAAAGCTATTT	NA	False	NA	NA	False	NA	NA	NA	72635336	72637034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72635300_72637000
ES_00060914	chr9	+	207	1	FSM	ENSMUSG00000102411.2	ENSMUST00000194508.2	2749	1	1406	1136	1406	-1136	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATTTTAAAAGCTATTT	NA	False	NA	NA	False	NA	NA	NA	72636827	72637034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72636800_72637000
ES_00060915	chr9	+	233	2	Antisense	novelGene_ENSMUSG00000098294.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTCTAATATCTGACAAAA	1403	False	NA	NA	False	NA	NA	NA	72672663	72701777	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_72672717_72701597
ES_00060917	chr9	+	3019	9	FSM	ENSMUSG00000034563.17	ENSMUST00000037977.15	3151	9	115	17	-34	-15	multi-exon	FALSE	canonical	1	1	junction_8	60.1040764008565	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCGACTTCAAGGAATTC	NA	False	NA	-10	True	AATAAA	-14	NA	72892825	72923605	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920275_72922613
ES_00060919	chr9	+	1653	3	NNC	ENSMUSG00000092622.9	novel	1681	3	NA	NA	17	-8	intron_retention	FALSE	canonical	3	24	junction_2	114.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGCATTCCCCAGGTGT	NA	False	NA	18	True	AATAAA	-5	NA	73009696	73011712	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_73009958_73010111_73010292_73010500
ES_00060920	chr9	+	2048	2	FSM	ENSMUSG00000043013.11	ENSMUST00000056006.11	3957	2	-12	1921	-12	-500	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCACCTCACTGTGCTCG	NA	False	NA	NA	False	AAAACA	-22	NA	74769190	74797142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_74770684_74796587
ES_00060921	chr9	+	11773	41	NIC	ENSMUSG00000034593.17	novel	11702	41	NA	NA	-21	-22	combination_of_known_junctions	FALSE	canonical	3	14	junction_31	15.7384084328753	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGATAAGGATATAAAGA	2312	False	NA	NA	False	NA	NA	NA	74978448	75130948	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75099665_75099747_75101220_75101420_75103407_75103483_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
ES_00060923	chr9	+	3292	11	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-94	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.3753260832581	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTATGTGTGTGCATTCT	NA	False	NA	18	True	AATAAA	-23	NA	75375803	75393965	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_75375966_75377587_75377649_75379458_75379554_75380085_75380262_75380603_75380689_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390480_75391931
ES_00060924	chr9	+	671	4	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	-37	506	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	19539.0284985377	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGGTGTCCGTTTGAATC	NA	False	NA	NA	False	ATTAAA	-43	NA	78152794	78153923	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78152947_78153027_78153209_78153363_78153418_78153639
ES_00060925	chr9	+	626	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	-34	514	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	21225.5	282	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTGAATCCTTGTAAATG	3304	False	NA	NA	False	ATTAAA	-35	NA	78179245	78180379	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179395_78179475_78179657_78180083
ES_00060926	chr9	+	591	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	-4	510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1450	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGTTTGAATCCTTGTA	3334	False	NA	NA	False	ATTAAA	-31	NA	78179275	78180375	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_78179397_78179479_78179660_78180085
ES_00060927	chr9	+	602	5	FSM	ENSMUSG00000074179.12	ENSMUST00000126625.2	683	5	81	0	81	0	multi-exon	FALSE	canonical	1	2	junction_3	11.5758369027902	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGATACTGGCCTCTAAT	1081	False	NA	NA	False	NA	NA	NA	78205380	78212719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_78205433_78206218_78206352_78209967_78210110_78211653_78211786_78212576
ES_00060928	chr9	+	1965	15	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	17	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	26.467538839962	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCTTGTTGAAATTTTTT	9059	False	NA	1	True	AATAAA	-12	NA	78303075	78330868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78318873_78319031_78319474_78319594_78320247_78320359_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ES_00060929	chr9	+	202	1	Intergenic	novelGene_4212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAGGATTGGCCAAAC	1790	False	NA	NA	False	NA	NA	NA	78397664	78397866	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78397700_78397900
ES_00060930	chr9	+	211	1	Intergenic	novelGene_4214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATGACATTGCAAACAA	5422	False	NA	NA	False	AAAAAG	-15	NA	78401296	78401507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78401300_78401500
ES_00060931	chr9	+	205	2	Antisense	novelGene_ENSMUSG00000049624.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATTCTTTTTAATAGC	NA	False	NA	NA	False	NA	NA	NA	78425243	78475820	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_+_78425271_78475642
ES_00060932	chr9	+	803	1	FSM	ENSMUSG00000111336.2	ENSMUST00000216332.2	753	1	135	-185	135	185	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAGGTGGGGGAGAAGT	NA	False	NA	NA	False	AATAAA	-8	NA	79254190	79254993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_79254200_79255000
ES_00060933	chr9	+	1823	5	FSM	ENSMUSG00000034252.15	ENSMUST00000175673.2	1916	5	-6	99	-6	-99	multi-exon	FALSE	canonical	0	0	junction_3	128.61449179622	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTTTCTCCGTTTGGT	NA	False	NA	NA	False	ATTAAA	-18	NA	79974178	80001667	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818
ES_00060935	chr9	+	4281	23	NIC	ENSMUSG00000034252.15	novel	3495	24	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	114.532115024131	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAATTTGATATTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	79974219	80051453	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ES_00060939	chr9	+	1266	4	FSM	ENSMUSG00000097466.9	ENSMUST00000180663.8	1411	4	10	135	10	-135	multi-exon	FALSE	canonical	1	1	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTAAAATGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	81514420	81527003	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_81514534_81518887_81518991_81524599_81524756_81526109
ES_00060940	chr9	+	789	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	-14	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTGATGAAGAAGGAGAT	NA	False	NA	71	True	NA	NA	NA	81559650	81560439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_81559600_81560400
ES_00060941	chr9	+	531	4	FSM	ENSMUSG00000032263.15	ENSMUST00000188200.7	540	4	9	0	9	0	multi-exon	FALSE	canonical	2	8	junction_1	313.434026373795	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	2760	False	NA	NA	False	AATAAA	-19	NA	83927948	84006292	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_83927973_83951157_83951245_84004286_84004436_84006021
ES_00060942	chr9	+	7280	37	NIC	ENSMUSG00000034973.17	novel	9187	38	NA	NA	9	-510	combination_of_known_junctions	FALSE	canonical	2	5	junction_13	4.41893722209758	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTCAATGTCCTCAGC	NA	False	NA	NA	False	NA	NA	NA	86349275	86436168	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_86349350_86367465_86367657_86369306_86369489_86371630_86371802_86374033_86374224_86376448_86376548_86382848_86382949_86383926_86384037_86385045_86385155_86386229_86386351_86388247_86388368_86388457_86388573_86389556_86389791_86394613_86395233_86395877_86396153_86397310_86397464_86399019_86399118_86400206_86400467_86401925_86403913_86404815_86404928_86405006_86405190_86406276_86406403_86408824_86408960_86413767_86413824_86414982_86415088_86417960_86418028_86418167_86418313_86418495_86418576_86424411_86424522_86424787_86424938_86425061_86425124_86427293_86427447_86430222_86430360_86430853_86430910_86432055_86432221_86433698_86433829_86436068
ES_00060943	chr9	+	290	1	FSM	ENSMUSG00000034973.17	ENSMUST00000190834.2	3971	1	17	3664	17	-3664	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCAGTGGGAACTTG	NA	False	NA	NA	False	NA	NA	NA	86379099	86379389	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_86379100_86379400
ES_00060944	chr9	+	1280	2	Intergenic	novelGene_4221	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTCATCTTGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	86607220	86609700	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_86607367_86608566
ES_00060946	chr9	+	5497	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113059.8	5379	24	-121	3	-121	0	multi-exon	FALSE	canonical	2	12	junction_18	7.29502510649195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGTGGTTTGGCCTTGT	NA	False	NA	2	True	CATAAA	-16	NA	90045000	90082150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ES_00060947	chr9	+	4833	25	FSM	ENSMUSG00000032363.16	ENSMUST00000147250.8	4833	25	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_18	7.86065713255295	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACGGTGGCAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	90045254	90082043	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90075919_90076095_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ES_00060948	chr9	+	5121	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113060.3	5098	24	-24	1	0	1	multi-exon	FALSE	canonical	2	9	junction_18	7.51406997818433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGTTTGGCCTTGTCTTT	NA	False	NA	6	True	CATAAA	-20	NA	90045254	90082154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ES_00060949	chr9	+	3814	19	NNC	ENSMUSG00000032374.15	novel	3649	19	NA	NA	204	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	19.2292857927372	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGCCTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	92424520	92490481	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475387_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ES_00060950	chr9	+	1276	1	FSM	ENSMUSG00000032374.15	ENSMUST00000190075.2	1276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGGAAATAAAGAGAAAAA	NA	False	NA	NA	False	CATAAA	-9	NA	92483394	92484670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_92483400_92484700
ES_00060951	chr9	+	1415	12	NNC	ENSMUSG00000041440.19	novel	2815	16	NA	NA	10	-15721	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	20.4494943258218	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAAGTCTATAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	96001494	96039797	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96039454
ES_00060953	chr9	+	1940	16	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	154.811483926599	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078316	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96113783_96113853_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060954	chr9	+	2676	14	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	2	-21	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_4	136.43434817137	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTACTTTTGTCTTTATTT	NA	False	NA	NA	False	AATGAA	-9	NA	96078329	96200910	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060955	chr9	+	1613	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	154.716048151301	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078356	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96129102_96129142_96155891_96155996_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060956	chr9	+	1448	11	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_6	158.776604069995	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078356	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96169653_96169776_96177017_96177181_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060957	chr9	+	1640	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	124.802733232178	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96078356	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060959	chr9	+	1358	11	NIC	ENSMUSG00000032411.16	novel	2408	11	NA	NA	25	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	132.875731418495	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAGGAGAGAACTCAT	NA	False	NA	-8	True	NA	NA	NA	96140836	96200022	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_96140938_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ES_00060962	chr9	+	829	3	Intergenic	novelGene_4230	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGACAGGTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	97157802	97163946	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_97157969_97160761_97160997_97163518
ES_00060964	chr9	+	540	2	FSM	ENSMUSG00000032458.7	ENSMUST00000189395.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCCCTGCAGAGTTTAC	NA	False	NA	NA	False	NA	NA	NA	98469398	98470084	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_98469459_98469604
ES_00060983	chr9	+	1308	11	FSM	ENSMUSG00000023345.18	ENSMUST00000216306.2	1308	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	129.511736919864	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	31	False	NA	7	True	AATAAA	-19	NA	106160082	106227076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106203482_106203526_106207071_106207216_106226880
ES_00060987	chr9	+	5688	24	NIC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	54	-5	combination_of_known_junctions	FALSE	canonical	3	304	junction_23	40.0622389135641	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTTTCCTTGTTTTCTT	NA	False	NA	11	True	AATAAA	-22	NA	106699126	106758186	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132
ES_00060988	chr9	+	544	2	FSM	ENSMUSG00000010047.13	ENSMUST00000194794.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCCAGCTGGTGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	107446593	107447811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107446629_107447302
ES_00060990	chr9	+	4168	5	NNC	ENSMUSG00000010051.16	novel	3014	4	NA	NA	8	2338	intron_retention	FALSE	canonical	1	2	junction_4	14.3069039278245	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGACAGTTTATTGG	NA	False	NA	10	True	AATAAA	-16	NA	107454164	107461247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107458135_107460042
ES_00060993	chr9	+	4976	5	ISM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	145	0	0	0	intron_retention	FALSE	canonical	3	292	junction_3	27.3541587331799	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6865	False	NA	17	True	AATAAA	-17	NA	107879844	107925981	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923
ES_00060994	chr9	+	1343	10	NIC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	-3	-86	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	34.1655374700484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTGGGTGTAACCCACA	NA	False	NA	-57	True	NA	NA	NA	107926464	107928815	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_107926561_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ES_00060995	chr9	+	1876	8	FSM	ENSMUSG00000070284.11	ENSMUST00000137284.8	1853	8	-23	0	-3	0	multi-exon	FALSE	canonical	3	100	junction_6	10.1196918562428	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCAGTCCTTGTTGTTC	NA	False	NA	10	True	NA	NA	NA	107926464	107929115	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
ES_00061003	chr9	+	3335	14	NNC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	11	-389	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	33.6877411727982	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTTCCCTGTATGATGA	3166	False	NA	7	True	AATAAA	-18	NA	108685582	108695654	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_108685854_108688020_108688102_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108690208_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ES_00061005	chr9	+	3158	20	FSM	ENSMUSG00000023259.18	ENSMUST00000192507.7	4943	20	1785	0	436	0	multi-exon	FALSE	canonical	3	24	junction_1	7.7677506485793	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCAGGCTCTGCTGTGG	NA	False	NA	12	True	AATAAA	-12	NA	108732331	108742110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
ES_00061009	chr9	+	930	6	FSM	ENSMUSG00000032478.15	ENSMUST00000198201.5	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	211.367547177896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661854	109672024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_109661876_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ES_00061017	chr9	+	412	2	FSM	ENSMUSG00000032481.18	ENSMUST00000198211.2	412	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGTCTGGAGTGGTTCT	919	False	NA	NA	False	AATAAA	-24	NA	110063975	110066468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_+_110064122_110066202
ES_00061038	chr9	+	2913	8	NNC	ENSMUSG00000032519.12	novel	961	8	NA	NA	0	1710	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	54.4370072202912	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTGGTTTTTTTTCG	1791	False	NA	NA	False	NA	NA	NA	119939470	119955280	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707_119953792_119954348
ES_00061043	chr9	+	5384	17	NIC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	9	5	combination_of_known_splicesites	FALSE	canonical	3	22	junction_15	60.0020507462037	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTTTTTTAGTATGTC	NA	False	NA	16	True	AATAAA	-24	NA	121126608	121303989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289782_121298050_121298154_121301302
ES_00061044	chr9	+	6983	18	NNC	ENSMUSG00000032525.16	novel	7022	17	NA	NA	6	-23	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_16	13.0067855594007	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGCTGAGTTTGAGCC	NA	False	NA	-14	True	AATGAA	-2	NA	121548288	121585886	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121559062_121559091_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582053_121582159_121583310
ES_00061048	chr9	+	1000	5	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	14	67351	-6	-5	5prime_fragment	FALSE	canonical	3	41	junction_4	7.58287544405155	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAACCTGCTGGTCCTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	123196005	123224378	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015
ES_00061051	chr9	+	1413	7	NNC	ENSMUSG00000093803.6	novel	385	3	NA	NA	-968	1094	intron_retention	FALSE	canonical	3	14	junction_1	62.6728720331922	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTGGGGTGCACAGTC	NA	False	NA	17	True	AATAAA	-18	NA	124199448	124202490	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_+_124199575_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794
ES_00061052	chr9	-	202	1	FSM	ENSMUSG00000110660.2	ENSMUST00000211968.2	3085	1	1749	1134	1749	-1134	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGATCAATCTGGCCTT	NA	False	NA	NA	False	NA	NA	NA	3495714	3495512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_3495500_3495700
ES_00061053	chr9	-	13804	90	FSM	ENSMUSG00000047193.17	ENSMUST00000140466.8	14264	90	-43	503	-43	298	multi-exon	TRUE	canonical	0	0	junction_70	4.72490280074151	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCCTACCAGTAAAGAGG	-10	True	NA	NA	False	ATTAAA	-41	NA	7184489	6929005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_6929624_6935238_6935356_6940542_6940625_6941594_6941705_6955906_6955997_6967079_6967290_6983389_6983507_6992523_6992629_6993937_6994147_6996863_6996940_7001340_7001497_7002555_7002667_7005489_7005616_7006715_7006877_7009970_7010044_7011172_7011305_7014138_7014217_7015473_7015525_7016729_7016796_7023310_7023401_7031640_7031785_7034989_7035125_7035599_7035720_7037652_7037817_7041601_7041726_7044329_7044429_7049082_7049193_7050341_7050484_7051369_7051497_7052560_7052648_7071007_7071130_7071800_7071925_7075761_7075923_7076212_7076327_7077871_7078010_7081003_7081159_7083156_7083239_7084933_7085077_7101073_7101188_7101491_7101601_7102310_7102560_7103654_7103786_7111424_7111593_7112047_7112151_7113085_7113231_7114864_7115017_7116393_7116641_7117394_7117655_7118830_7118987_7120808_7120939_7122607_7122816_7124731_7124997_7125730_7125931_7128157_7128274_7128955_7129180_7129662_7129846_7130693_7130877_7131837_7132044_7134243_7134395_7135018_7135139_7136997_7137111_7139160_7139279_7139373_7139507_7140898_7141282_7142199_7142371_7142649_7142765_7142856_7143013_7144137_7144344_7145548_7145699_7147682_7147811_7148624_7148741_7155080_7155209_7157551_7157781_7157892_7158033_7158828_7158928_7159480_7159634_7160153_7160250_7162730_7162927_7165598_7165775_7167116_7167242_7168253_7168366_7168458_7168573_7168677_7168813_7169476_7169710_7170861_7171007_7172802_7172922_7174739_7174876_7175241_7175413_7176762_7177231_7184338
ES_00061054	chr9	-	3114	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	57.8234861933761	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-58	False	NA	-1	True	AATAAA	-21	NA	7837096	7818227	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
ES_00061056	chr9	-	215	2	Intergenic	novelGene_4058	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	7939777	7859352	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_7859477_7939686
ES_00061058	chr9	-	4142	9	NNC	ENSMUSG00000053110.14	novel	4115	8	NA	NA	0	20397	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.6101127462948	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGCATACATACAGCCGGG	15	True	NA	NA	False	NA	NA	NA	8004589	7911602	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_7911630_7931999_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ES_00061059	chr9	-	4340	10	NNC	ENSMUSG00000053110.14	novel	4171	9	NA	NA	-142	20397	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.8152900824535	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGCATACATACAGCCGGG	NA	False	NA	NA	False	NA	NA	NA	8004739	7911602	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_7911630_7931999_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ES_00061061	chr9	-	4956	12	FSM	ENSMUSG00000040729.9	ENSMUST00000238782.2	4955	12	0	-1	0	1	multi-exon	FALSE	canonical	1	1	junction_7	4.44060899702539	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGATCTCTGCTTTTTATG	159	False	NA	NA	False	AATAAA	-21	NA	8134295	8076460	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_8076948_8079495_8079561_8087228_8087427_8092244_8092318_8095214_8095328_8099732_8101843_8103318_8103518_8104653_8105790_8112080_8112193_8120642_8120789_8130196_8130317_8134098
ES_00061063	chr9	-	8858	13	FSM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	99	0	99	0	multi-exon	FALSE	canonical	2	6	junction_12	3.15788255358274	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTCCTCTTTTACCTTC	NA	False	NA	1	True	AATAAA	-17	NA	14526203	14453261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049_14505008_14507746_14507897_14526029
ES_00061064	chr9	-	2382	1	FSM	ENSMUSG00000049307.7	ENSMUST00000061498.7	4074	1	1609	83	1609	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATGTTTTGATAAAAC	1027	False	NA	NA	False	NA	NA	NA	14662080	14659698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14659700_14662100
ES_00061065	chr9	-	201	1	FSM	ENSMUSG00000111817.2	ENSMUST00000216810.2	267	1	192	-126	192	126	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTAAGCCATTTAAAAAAA	NA	False	NA	NA	False	AATAAA	-29	NA	14719144	14718943	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_14718900_14719100
ES_00061066	chr9	-	2577	9	NNC	ENSMUSG00000031938.16	novel	2650	9	NA	NA	-1421	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	7.58184509206037	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTCTTTC	NA	False	NA	-7	True	AATAAA	-15	NA	15214273	15194634	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15214215
ES_00061067	chr9	-	4144	13	FSM	ENSMUSG00000046111.19	ENSMUST00000160946.8	4144	13	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	29.5249423745792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTGCTGTCCATCCA	NA	False	NA	0	True	AATAAA	-17	NA	15244688	15228210	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
ES_00061069	chr9	-	3180	10	NIC	ENSMUSG00000046111.19	novel	4144	13	NA	NA	318	761	combination_of_known_junctions	FALSE	canonical	3	87	junction_2	32.8648560841532	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGCCTTTAATCCCAGCAC	NA	False	NA	NA	False	NA	NA	NA	15244370	15233533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
ES_00061070	chr9	-	213	1	FSM	ENSMUSG00000111161.2	ENSMUST00000217305.2	480	1	-24	291	-24	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACAATGTCACCTAGCA	NA	False	NA	NA	False	AAAAAG	-39	NA	17697107	17696894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_17696900_17697100
ES_00061071	chr9	-	378	2	FSM	ENSMUSG00000074500.12	ENSMUST00000034646.8	378	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTGAGTACGATGTGGA	1306	False	NA	NA	False	NA	NA	NA	18384718	18384185	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_18384291_18384445
ES_00061072	chr9	-	12367	11	NNC	ENSMUSG00000063108.16	novel	11276	10	NA	NA	-53	1288	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	22.2146348158145	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCTTGGTCATAGTGTT	NA	False	NA	NA	False	NA	NA	NA	20371511	20338456	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_20340031_20340282_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842_20370958_20371240
ES_00061073	chr9	-	3648	9	FSM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	0	-1231	0	233	multi-exon	FALSE	canonical	2	5	junction_8	9.71387538524146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGGTGTCACATACCTTT	NA	False	NA	NA	False	NA	NA	NA	20404038	20379611	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
ES_00061074	chr9	-	485	5	FSM	ENSMUSG00000060510.15	ENSMUST00000213418.2	485	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	23.4147389479362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGAGCCTATCTACGTC	NA	False	NA	NA	False	NA	NA	NA	20432713	20417352	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20417362_20418023_20418179_20418928_20419020_20419314_20419482_20432650
ES_00061075	chr9	-	1671	3	FSM	ENSMUSG00000066892.15	ENSMUST00000151861.9	1668	3	0	-3	0	2	multi-exon	FALSE	canonical	0	0	junction_2	46.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTGCACTTATTTAACAA	NA	False	NA	1	True	ATTAAA	-23	NA	20556051	20549079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_20550495_20553319_20553393_20555868
ES_00061077	chr9	-	4473	52	ISM	ENSMUSG00000004098.8	ENSMUST00000004201.8	6119	67	14773	0	14773	0	3prime_fragment	FALSE	canonical	2	3	junction_45	3.4176194974871	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTTTTCTCTTTAAAAT	NA	False	NA	-2	True	AATAAA	-21	NA	20711590	20681345	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_20682275_20682366_20682607_20682882_20682952_20683403_20683517_20683600_20683800_20684380_20684435_20685189_20685226_20685309_20685364_20685611_20685720_20685856_20685911_20686326_20686381_20686528_20686637_20686761_20686816_20687129_20687184_20687387_20687442_20687608_20687663_20688287_20688396_20689772_20689827_20689960_20690015_20690096_20690151_20690311_20690366_20691196_20691305_20693103_20693158_20693782_20693837_20693920_20694029_20694779_20694888_20695964_20696019_20696441_20696532_20696668_20696777_20696868_20696923_20697494_20697549_20697646_20697701_20698385_20698431_20698556_20698611_20698826_20698872_20699846_20699901_20703940_20703995_20704805_20704914_20705006_20705061_20705242_20705288_20706952_20707007_20707105_20707151_20707245_20707300_20708517_20708563_20708678_20708733_20708869_20708915_20709713_20709768_20709884_20709930_20710331_20710386_20710555_20710610_20710704_20710759_20711538
ES_00061079	chr9	-	1043	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	92	-636	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	12	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTTTAGTTTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	21150536	21148054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21148247_21148366_21149053_21150371
ES_00061080	chr9	-	201	1	Intergenic	novelGene_4078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCAGACTGAGAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	21444416	21444215	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_21444200_21444400
ES_00061081	chr9	-	4834	12	NNC	ENSMUSG00000032194.10	novel	5040	12	NA	NA	2243	11	at_least_one_novel_splicesite	FALSE	non_canonical	3	203	junction_1	71.5494396487463	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTGTTCTCCTTCTT	NA	False	NA	-1	True	AATAAA	-26	NA	21707556	21678068	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21678614_21678633_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375
ES_00061082	chr9	-	6436	49	NIC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_31	49.1827480762648	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6275	False	NA	NA	False	TTTAAA	-18	NA	21763912	21711475	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00061083	chr9	-	3027	22	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	11	-5665	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	56.3121765206229	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATGTGTACATCTACAT	6286	False	NA	NA	False	NA	NA	NA	21763901	21741206	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750205_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00061084	chr9	-	3035	22	ISM	ENSMUSG00000032198.10	ENSMUST00000034728.9	6467	49	27	29731	8	-5665	5prime_fragment	FALSE	canonical	0	0	junction_4	44.4641566263186	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATGTGTACATCTACAT	6283	False	NA	NA	False	NA	NA	NA	21763904	21741206	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ES_00061085	chr9	-	601	1	FSM	ENSMUSG00000040883.19	ENSMUST00000216178.2	877	1	284	-8	284	3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGGTCATTTTTTTCAC	NA	False	NA	-2	True	AATAAA	-17	NA	21832901	21832300	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_21832300_21832900
ES_00061086	chr9	-	1448	8	NIC	ENSMUSG00000066839.13	novel	1676	9	NA	NA	5	-1	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	80.1136947196461	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTGGCCCTGTGGCTT	5926	False	NA	-10	True	AATAAA	-14	NA	21996693	21983542	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996652
ES_00061087	chr9	-	1635	9	NNC	ENSMUSG00000066839.13	novel	1676	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_8	75.088281375991	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTGGCCCTGTGGCTT	5921	False	NA	-10	True	AATAAA	-14	NA	21996698	21983542	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995501_21996652
ES_00061089	chr9	-	1458	6	FSM	ENSMUSG00000001348.16	ENSMUST00000217643.2	1447	6	0	-11	0	0	multi-exon	TRUE	canonical	2	3	junction_5	116.082039954508	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	8896	False	NA	-19	True	AATAAA	-21	NA	22043127	22038022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818_22041905_22043032
ES_00061090	chr9	-	1353	5	FSM	ENSMUSG00000001348.16	ENSMUST00000165735.9	1376	5	23	0	3	0	multi-exon	FALSE	canonical	1	1	junction_4	107.395006867172	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	5039	False	NA	-19	True	AATAAA	-21	NA	22046984	22038022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22046908
ES_00061091	chr9	-	328	1	FSM	ENSMUSG00000110759.2	ENSMUST00000215035.2	328	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACTGAATAAATCGACT	NA	False	NA	NA	False	NA	NA	NA	22241796	22241468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22241500_22241800
ES_00061093	chr9	-	206	1	Intergenic	novelGene_4083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACACTACAAAACTAAAG	NA	False	NA	NA	False	NA	NA	NA	22331090	22330884	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_22330900_22331100
ES_00061094	chr9	-	467	1	FSM	ENSMUSG00000089909.2	ENSMUST00000160078.2	468	1	5	-4	5	4	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACACACAAAATGGCAAACA	NA	False	NA	NA	False	CATAAA	-30	NA	22589609	22589142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_22589100_22589600
ES_00061095	chr9	-	2555	16	FSM	ENSMUSG00000036395.16	ENSMUST00000162702.8	2555	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	6.10864596744283	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTCTTTGTGGATGTC	NA	False	NA	NA	False	AATACA	-9	NA	26717717	26675063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_26676120_26676397_26676515_26676875_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681174_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703187_26717593
ES_00061096	chr9	-	5928	8	FSM	ENSMUSG00000033453.9	ENSMUST00000065112.7	5928	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.989743318610787	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTGTCTGTCTCTGT	NA	False	NA	NA	False	AATAAA	-22	NA	30833748	30810450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_30814086_30815776_30815953_30816055_30816238_30817356_30817535_30821893_30822178_30822405_30822574_30822976_30823110_30832576
ES_00061098	chr9	-	432	1	FSM	ENSMUSG00000111246.2	ENSMUST00000214795.2	2972	1	21	2519	21	-2519	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGGCGGGGTCTTATT	NA	False	NA	NA	False	NA	NA	NA	31192267	31191835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31191800_31192300
ES_00061099	chr9	-	1215	1	FSM	ENSMUSG00000111548.2	ENSMUST00000213951.2	665	1	-34	-516	-34	516	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCTGTAATGGC	NA	False	NA	8	True	AATAAA	-21	NA	31346037	31344822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_31344800_31346000
ES_00061100	chr9	-	882	2	Antisense	novelGene_ENSMUSG00000041444.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	950	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATGATATATGATATAT	NA	False	NA	NA	False	NA	NA	NA	32047579	32046599	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_32046898_32046995
ES_00061101	chr9	-	241	1	FSM	ENSMUSG00000102467.2	ENSMUST00000194946.2	396	1	230	-75	230	75	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTTTCTCTCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	32750988	32750747	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_32750700_32751000
ES_00061102	chr9	-	1485	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_5	6.15142259969188	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34901093	34889330	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34901035
ES_00061103	chr9	-	1455	7	FSM	ENSMUSG00000032040.16	ENSMUST00000119847.2	1445	7	-2	-8	0	4	multi-exon	FALSE	canonical	1	2	junction_1	318.791162919482	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTAGCCCAGTAGGGTG	NA	False	NA	1	True	AATAAA	-26	NA	35087357	35035699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35036141_35036462_35036640_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ES_00061104	chr9	-	2075	11	NNC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	28	0	at_least_one_novel_splicesite	TRUE	canonical	3	32	junction_3	55.0422564944425	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122165	35115503	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_35116420_35116600_35116706_35116884_35116987_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ES_00061105	chr9	-	3260	9	FSM	ENSMUSG00000039048.16	ENSMUST00000143039.8	3260	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_7	18.9917745353087	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122266	35115503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711
ES_00061107	chr9	-	258	2	Intergenic	novelGene_4103	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTGTCTTAGCTCCGT	NA	False	NA	NA	False	NA	NA	NA	36000415	35999470	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_35999685_36000371
ES_00061108	chr9	-	705	6	FSM	ENSMUSG00000032113.17	ENSMUST00000174794.2	758	6	53	0	53	0	multi-exon	FALSE	canonical	3	367	junction_4	46.9612606304388	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGTCCTGAGCATATGC	4614	False	NA	NA	False	NA	NA	NA	36633988	36625039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899
ES_00061109	chr9	-	1669	4	FSM	ENSMUSG00000034303.9	ENSMUST00000216042.2	1669	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	4.92160768674447	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTAGTTCCTTTTTTG	NA	False	NA	NA	False	ATTAAA	-28	NA	37259684	37252705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_37253918_37255179_37255330_37259033_37259220_37259563
ES_00061110	chr9	-	447	3	FSM	ENSMUSG00000053310.12	ENSMUST00000182070.2	447	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	17	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAGAAAAAAAGA	NA	False	NA	-45	True	NA	NA	NA	37457434	37456249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_37456628_37456995_37457014_37457383
ES_00061111	chr9	-	748	3	NNC	ENSMUSG00000087135.8	novel	639	3	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1.5	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTCTGTGTGTGACTG	NA	False	NA	NA	False	AATAAA	-21	NA	40694768	40692045	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_40692489_40694218_40694287_40694531
ES_00061112	chr9	-	6050	14	FSM	ENSMUSG00000032020.16	ENSMUST00000044155.15	6354	14	306	-2	-254	2	multi-exon	FALSE	canonical	0	0	junction_12	2.76067052998867	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGTCCTGAGTGTGGTC	6668	False	NA	NA	False	AATAAA	-40	NA	41069052	40922391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_40926333_40927893_40928004_40929312_40929420_40934716_40934862_40937545_40937639_40939312_40939436_40940934_40941056_40942776_40942910_40948732_40948942_40954770_40954941_40958176_40958376_40961735_40961923_40962612_40962667_41068594
ES_00061113	chr9	-	2281	2	FSM	ENSMUSG00000037287.16	ENSMUST00000142775.2	2327	2	46	0	46	0	multi-exon	FALSE	canonical	2	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAATAGAAAAAAAAAAAGA	4400	False	NA	NA	False	NA	NA	NA	42339488	42325285	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42327446_42339367
ES_00061114	chr9	-	3323	19	FSM	ENSMUSG00000032017.15	ENSMUST00000034515.7	3413	19	75	15	75	-15	multi-exon	TRUE	canonical	1	2	junction_7	3.01488078915892	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCTGAATTTGTATATT	NA	False	NA	NA	False	ATTAAA	-18	NA	42719920	42431722	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_42432482_42435775_42435895_42448609_42448739_42453117_42453344_42455053_42455220_42458862_42459037_42461702_42461813_42477594_42477709_42502645_42502850_42509149_42509258_42533354_42533460_42534221_42534375_42540272_42540435_42566782_42566837_42571013_42571193_42582433_42582600_42586508_42586607_42599228_42599394_42719788
ES_00061116	chr9	-	10849	40	NIC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	-152	2	intron_retention	FALSE	canonical	2	6	junction_29	6.17666708711603	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGACTTTTTCTTTGTAT	NA	False	NA	1	True	ATTAAA	-21	NA	43017434	42875135	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919408_42921474_42921550_42927198_42927340_42929347_42929468_42929630_42929709_42931900_42932080_42934110_42934169_42937475_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
ES_00061117	chr9	-	372	2	Genic_Genomic	ENSMUSG00000111129.2	novel	2323	1	NA	NA	-49495	-2090	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTGGGTGAGGAGCTGC	NA	False	NA	NA	False	GGGGCT	-16	NA	43697228	43647500	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_43647681_43697036
ES_00061118	chr9	-	6057	1	FSM	ENSMUSG00000111291.2	ENSMUST00000217413.2	2420	1	-3643	6	-3643	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCAAATGTTATGTCTT	NA	False	NA	NA	False	AATAAA	-8	NA	44207403	44201346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44201300_44207400
ES_00061119	chr9	-	8350	11	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	-6	2390	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	19.6834956245073	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCAAATGTTATGTCTT	NA	False	NA	NA	False	AATAAA	-8	NA	44216949	44201346	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216078_44216244_44216431
ES_00061120	chr9	-	1622	15	Fusion	ENSMUSG00000032126.17_ENSMUSG00000032119.6	novel	1605	14	NA	NA	0	29	multi-exon	FALSE	non_canonical	0	0	junction_1	240.298284026587	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGTTTGCCAGCCTAAT	1408	False	NA	NA	False	NA	NA	NA	44255525	44211557	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr9_-_44211588_44247648_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ES_00061121	chr9	-	1965	5	FSM	ENSMUSG00000074397.6	ENSMUST00000098837.3	1968	5	0	3	0	-3	multi-exon	FALSE	canonical	0	0	junction_2	16.1322658049017	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCGATGGTTCATAGGC	9214	False	NA	NA	False	NA	NA	NA	44352433	44345499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44346607_44346719_44346879_44347155_44347400_44347500_44347576_44352053
ES_00061122	chr9	-	5179	19	NIC	ENSMUSG00000048537.17	novel	5461	22	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	12.086749197896	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	NA	False	NA	0	True	AATAAA	-18	NA	44632730	44597604	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690_44619820_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44632550
ES_00061124	chr9	-	2135	1	FSM	ENSMUSG00000032096.17	ENSMUST00000217194.2	2616	1	75	406	75	-406	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTTTATATACAACAAAA	NA	False	NA	NA	False	NA	NA	NA	44661730	44659595	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44659600_44661700
ES_00061125	chr9	-	12753	30	ISM	ENSMUSG00000002028.14	ENSMUST00000002095.11	16461	36	38436	6	5323	-6	3prime_fragment	FALSE	canonical	0	0	junction_4	5.69164019709388	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCACTCTGCTGAGCTTC	NA	False	NA	NA	False	AATAAA	-16	NA	44754158	44714657	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_44719475_44720360_44720491_44721011_44721096_44721932_44722037_44722198_44722378_44724283_44724359_44725871_44726043_44727891_44727957_44729002_44729084_44729579_44733817_44733983_44734167_44734524_44734686_44735621_44735701_44735817_44735936_44736686_44736846_44738118_44738257_44740080_44740188_44740374_44740569_44741346_44741421_44741691_44741803_44742520_44742695_44744157_44744343_44745203_44745318_44747098_44747220_44747440_44747537_44747847_44747995_44752267_44752382_44752859_44752992_44753606_44753681_44753829
ES_00061127	chr9	-	538	4	NNC	ENSMUSG00000038717.10	novel	544	3	NA	NA	0	7754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2201.46259463011	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATCTTCAGAAACTCCAA	NA	False	NA	NA	False	NA	NA	NA	44832040	44816100	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_44816126_44824545_44824765_44825948_44826110_44831907
ES_00061130	chr9	-	399	3	FSM	ENSMUSG00000002033.15	ENSMUST00000160886.2	412	3	13	0	13	0	multi-exon	FALSE	canonical	2	3	junction_2	2	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTAAACATAGGCACCATA	NA	False	NA	NA	False	NA	NA	NA	44891716	44884917	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44884936_44885460_44885689_44891563
ES_00061131	chr9	-	483	4	FSM	ENSMUSG00000032093.8	ENSMUST00000214582.2	517	4	34	0	34	0	multi-exon	FALSE	canonical	3	11	junction_2	1.88561808316413	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGACAGATAGGAGAGACA	7060	False	NA	NA	False	NA	NA	NA	44913651	44910833	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_44910886_44911732_44911780_44912276_44912445_44913435
ES_00061133	chr9	-	3625	17	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	44127	-1321	-7069	9	3prime_fragment	FALSE	canonical	3	46	junction_15	11.0989864402116	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGTGCTGGTCTCTTT	NA	False	NA	46	True	ATTAAA	-34	NA	45690898	45678234	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679
ES_00061134	chr9	-	2348	15	NIC	ENSMUSG00000043987.19	novel	6105	32	NA	NA	11	-236	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	7.72221814385119	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCCACACTGGGAGCC	NA	False	NA	NA	False	NA	NA	NA	45739978	45690987	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_45691135_45693249_45693547_45696180_45696328_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ES_00061135	chr9	-	1732	12	NIC	ENSMUSG00000043987.19	novel	5541	30	NA	NA	-23	-246	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	10.7871977994119	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATTAGGTGAGTCCAC	NA	False	NA	NA	False	NA	NA	NA	45739960	45690997	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_45691135_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ES_00061140	chr9	-	1080	8	NNC	ENSMUSG00000032026.8	novel	1077	7	NA	NA	0	36447	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.276883664263	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAACAAAAAAAACCCCAAC	NA	False	NA	NA	False	NA	NA	NA	48391890	48343364	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_48343389_48379811_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ES_00061141	chr9	-	1757	5	NNC	ENSMUSG00000042396.11	novel	1867	6	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	182.660203656954	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAATACACAAAAAGAGA	NA	False	NA	-21	True	NA	NA	NA	48406594	48400017	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_48401289_48402143_48402239_48404706_48404795_48405318_48405482_48406454
ES_00061142	chr9	-	220	2	Intergenic	novelGene_4129	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	7	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTTGGACATGATGTC	9045	False	NA	-2	True	NA	NA	NA	49789907	49787444	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_49787550_49789792
ES_00061144	chr9	-	1001	5	FSM	ENSMUSG00000032065.7	ENSMUST00000217236.2	1003	5	10	-8	-5	8	multi-exon	FALSE	canonical	0	0	junction_4	10.8483869768736	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTTTTTTATTTTTTTA	6972	False	NA	NA	False	AATAAA	-23	NA	50472615	50468110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470586_50472525
ES_00061145	chr9	-	1271	5	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	0	7401	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	608.434261034009	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAACAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	50515112	50500255	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_50500282_50507642_50508551_50510060_50510206_50511847_50511965_50515037
ES_00061146	chr9	-	1314	5	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-41	6364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	608.434261034009	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAAACCAA	NA	False	NA	NA	False	NA	NA	NA	50515153	50501292	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_50501321_50507642_50508551_50510060_50510206_50511847_50511965_50515037
ES_00061147	chr9	-	281	2	Genic_Genomic	ENSMUSG00000082465.2	novel	750	1	NA	NA	549	91230	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAATATTGGCTATAAG	9314	False	NA	NA	False	NA	NA	NA	53601034	53509603	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_53509634_53600783
ES_00061148	chr9	-	5575	19	NIC	ENSMUSG00000032030.17	novel	5945	20	NA	NA	86	-56	combination_of_known_junctions	FALSE	canonical	3	65	junction_18	82.5942222891865	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTTGATGTTCTACCAT	NA	False	NA	1	True	AATAAA	-32	NA	53581228	53525937	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53581150
ES_00061150	chr9	-	2031	1	FSM	ENSMUSG00000111686.2	ENSMUST00000213253.2	622	1	-73	-1336	-73	1336	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATAGACTTGTACC	1856	False	NA	NA	False	AATAAA	-23	NA	54732639	54730608	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_54730600_54732600
ES_00061151	chr9	-	392	1	FSM	ENSMUSG00002075524.1	ENSMUST00020182009.1	57	1	-190	-145	-190	145	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTCCTTTTCCCCAGT	8139	False	NA	NA	False	NA	NA	NA	56131245	56130853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_56130900_56131200
ES_00061152	chr9	-	298	2	Intergenic	novelGene_4146	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTAGGTATTCTTAATCAA	7956	False	NA	NA	False	NA	NA	NA	56153138	56136810	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_56136986_56153015
ES_00061153	chr9	-	557	3	NIC	ENSMUSG00000074305.10	novel	6996	7	NA	NA	-66	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	14	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCAGACTCTGAGAAGA	NA	False	NA	NA	False	TTTAAA	-21	NA	56325417	56167840	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_56168047_56225946_56226105_56325224
ES_00061154	chr9	-	472	6	FSM	ENSMUSG00000032299.11	ENSMUST00000213580.2	472	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	423.453137903121	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGTAGACTACACCCTG	7483	False	NA	NA	False	NA	NA	NA	57064409	57062848	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_57062873_57063185_57063349_57063455_57063576_57063799_57063840_57064058_57064125_57064350
ES_00061155	chr9	-	1487	7	NNC	ENSMUSG00000063849.7	novel	2744	7	NA	NA	-592	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_6	58.3057077442299	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57345358	57321243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57345280
ES_00061156	chr9	-	2534	7	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	71	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	40.1306892816735	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347303	57321243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57346396
ES_00061157	chr9	-	1421	5	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	57.2996509587973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347371	57321243	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_57322010_57322368_57322756_57342185_57342369_57344699_57344766_57347352
ES_00061160	chr9	-	4093	3	ISM	ENSMUSG00000051243.15	ENSMUST00000163897.8	4303	4	785	4	68	0	3prime_fragment	FALSE	canonical	0	0	junction_1	1	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGACTCGGTGAGATTTTT	NA	False	NA	-4	True	AATAAA	-15	NA	58108783	58103584	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_58107267_58107554_58107745_58108562
ES_00061161	chr9	-	2861	10	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	27	-1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	123.069989120915	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCATGTCTGTAATTTT	2231	False	NA	-14	True	NA	NA	NA	58156989	58125825	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00061162	chr9	-	2215	7	ISM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	-63	3204	5	-241	5prime_fragment	FALSE	canonical	3	178	junction_3	76.1389446268392	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGACCTTTGGCTGTGA	2209	False	NA	NA	False	NA	NA	NA	58157011	58128573	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ES_00061164	chr9	-	2487	17	NNC	ENSMUSG00000025235.9	novel	2518	16	NA	NA	0	33178	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	33.3532232325453	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAAAAACACAACCACAA	NA	False	NA	NA	False	TTTAAA	-36	NA	59260732	59196094	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_59196123_59229272_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
ES_00061166	chr9	-	3779	3	FSM	ENSMUSG00000051705.14	ENSMUST00000177963.8	3792	3	11	2	0	-2	multi-exon	FALSE	canonical	2	5	junction_1	2	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGTCTCTGTCTCCT	6429	False	NA	-6	True	AATAAA	-16	NA	59657921	59641543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59645152_59657544_59657655_59657860
ES_00061168	chr9	-	2537	1	Intergenic	novelGene_4160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGTACTGCTTACT	NA	False	NA	NA	False	NA	NA	NA	59842022	59839485	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_59839500_59842000
ES_00061169	chr9	-	1971	8	FSM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	12	54	5	-54	multi-exon	TRUE	canonical	1	3	junction_6	3.8438925848782	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTTGCTGTATTTTAT	NA	False	NA	1	True	NA	NA	NA	59857388	59850107	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464_59856592_59857070
ES_00061170	chr9	-	2592	15	ISM	ENSMUSG00000047766.16	ENSMUST00000166168.8	2784	17	2431	-8	2431	-2	3prime_fragment	FALSE	canonical	1	5	junction_10	6.47483354131634	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCAGTTTGTTGTATGG	6550	False	NA	NA	False	AATAAA	-19	NA	60592386	60494513	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317
ES_00061171	chr9	-	3076	23	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.55339757697	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGTCTCAAAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	61854018	61823186	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_61823212_61824558_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ES_00061173	chr9	-	296	1	FSM	ENSMUSG00000074250.12	ENSMUST00000139570.2	835	1	461	78	461	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTTATCAGGAATTCAC	NA	False	NA	NA	False	NA	NA	NA	62749168	62748872	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_62748900_62749200
ES_00061174	chr9	-	2821	5	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	16.7779617355625	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	AATAAA	-15	NA	63929275	63860357	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486_63928830_63928913
ES_00061175	chr9	-	204	2	Antisense	novelGene_ENSMUSG00000032397.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	164	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAATCCAATGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	64200270	64193849	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chr9_-_64194003_64200219
ES_00061176	chr9	-	1988	1	FSM	ENSMUSG00000054978.4	ENSMUST00000068307.4	2969	1	425	556	425	-556	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTGAGCCAGCTCCTG	NA	False	NA	NA	False	NA	NA	NA	65298509	65296521	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_65296500_65298500
ES_00061177	chr9	-	1806	5	FSM	ENSMUSG00000032370.9	ENSMUST00000215172.2	1806	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	28.7695585645661	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCACTTTTCAGTTCCTA	NA	False	NA	NA	False	AATAAA	-16	NA	66882702	66862669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66863483_66877863_66878219_66878457_66878649_66881999_66882067_66882322
ES_00061178	chr9	-	1259	10	FSM	ENSMUSG00000032366.16	ENSMUST00000050905.16	1259	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.62890712794	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956546	66935173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ES_00061179	chr9	-	228	1	Intergenic	novelGene_4188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTGGATTCTTAAAGAG	NA	False	NA	NA	False	NA	NA	NA	66957799	66957571	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_66957600_66957800
ES_00061181	chr9	-	201	1	Intergenic	novelGene_4189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAAACAA	NA	False	NA	NA	False	AATAAA	-19	NA	68756237	68756036	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_-_68756000_68756200
ES_00061182	chr9	-	4950	14	NIC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	17	0	intron_retention	TRUE	canonical	3	68	junction_2	84.7625294014551	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTCATAATTAGTG	2634	False	NA	-13	True	AATAAA	-21	NA	70410619	70332705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221
ES_00061184	chr9	-	2285	13	FSM	ENSMUSG00000041361.14	ENSMUST00000093823.8	2283	13	0	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_2	1.32024829314624	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGTCTCTTTTCTATTC	NA	False	NA	NA	False	AATAAA	-20	NA	71499642	71411626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_71412512_71422350_71422452_71432063_71432148_71453950_71454057_71456005_71456086_71457460_71457590_71459520_71459647_71462866_71463020_71466129_71466244_71468236_71468330_71471691_71471848_71486892_71486980_71499471
ES_00061185	chr9	-	4549	20	NIC	ENSMUSG00000032228.17	novel	6299	21	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	23.4606997366439	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACATAGTAAACTAGTGA	9461	False	NA	-40	True	AATAAA	-17	NA	72019046	71751562	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_72016957_72017031_72018019_72018117_72018857
ES_00061186	chr9	-	818	8	FSM	ENSMUSG00000032228.17	ENSMUST00000183594.2	818	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	32.0172147573196	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATGTTCGCTAGCACTT	9433	False	NA	NA	False	NA	NA	NA	72019074	71792496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_72016957_72017031_72018019_72018117_72018857
ES_00061187	chr9	-	857	1	FSM	ENSMUSG00000104469.2	ENSMUST00000191887.2	2299	1	1362	80	1362	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATCTGTTTTTAACCAA	NA	False	NA	NA	False	AATATA	-15	NA	71897191	71896334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_71896300_71897200
ES_00061188	chr9	-	302	1	Genic_Genomic	ENSMUSG00000090626.10	novel	NA	NA	NA	NA	-198	2577	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGGTTGTCTATGGCCA	NA	False	NA	NA	False	NA	NA	NA	72382743	72382441	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chr9_-_72382400_72382700
ES_00061190	chr9	-	526	2	FSM	ENSMUSG00000098294.2	ENSMUST00000184673.2	527	2	0	1	0	-1	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCAGCTGTCTCTCTTGT	7538	False	NA	NA	False	NA	NA	NA	72683507	72681345	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_72681693_72683328
ES_00061192	chr9	-	405	1	FSM	ENSMUSG00000111495.2	ENSMUST00000215494.2	1338	1	877	56	877	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGAAGAGGTGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	75282353	75281948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75281900_75282400
ES_00061193	chr9	-	2149	12	FSM	ENSMUSG00000032181.8	ENSMUST00000213324.2	2152	12	0	3	0	-3	multi-exon	TRUE	canonical	0	0	junction_7	1.99171839092788	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGCTCTGAGAAACAGCTG	7835	False	NA	-11	True	AATAAA	-22	NA	75591297	75550649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570489_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
ES_00061196	chr9	-	3136	4	FSM	ENSMUSG00000032358.13	ENSMUST00000098546.4	3136	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.816496580927726	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTGTATCATGC	NA	False	NA	NA	False	AATATA	-44	NA	76453086	76397986	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_76400368_76409390_76409516_76410299_76410465_76452621
ES_00061197	chr9	-	567	1	FSM	ENSMUSG00000083032.2	ENSMUST00000119091.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCCTCAGTTTCCTGAC	NA	False	NA	NA	False	NA	NA	NA	78296749	78296182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78296200_78296700
ES_00061198	chr9	-	363	1	FSM	ENSMUSG00000090724.2	ENSMUST00000171096.2	1203	1	47	793	47	-793	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGCGGGGCCTGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	78303393	78303030	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_78303000_78303400
ES_00061199	chr9	-	1736	4	ISM	ENSMUSG00000032344.18	ENSMUST00000070742.14	4049	5	5726	1528	5407	-265	3prime_fragment	FALSE	canonical	3	7	junction_1	3.2659863237109	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTCAAACCACCATGGAA	2416	False	NA	NA	False	NA	NA	NA	78344760	78339335	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_78340550_78341594_78341698_78342722_78342966_78344584
ES_00061203	chr9	-	2500	13	NIC	ENSMUSG00000033419.17	novel	2577	20	NA	NA	-5885	4	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	7.79021822544144	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAACGTAATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	86717261	86647981	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_86649390_86655571_86655677_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86686507_86686621_86688521_86688632_86691573_86691602_86697482_86697554_86703784_86703827_86707023_86707131_86717161
ES_00061207	chr9	-	1147	3	FSM	ENSMUSG00000097195.11	ENSMUST00000182872.4	1145	3	0	-2	0	0	multi-exon	FALSE	canonical	0	0	junction_1	595	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404941	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403770_88404359_88404435_88404536
ES_00061208	chr9	-	941	5	FSM	ENSMUSG00000097195.11	ENSMUST00000183045.3	939	5	0	-2	0	0	multi-exon	FALSE	canonical	3	588	junction_4	231.258918746932	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404941	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88404029_88404359_88404435_88404536_88404640_88404903
ES_00061209	chr9	-	949	4	FSM	ENSMUSG00000097195.11	ENSMUST00000180563.10	947	4	0	-2	0	0	multi-exon	FALSE	canonical	0	0	junction_2	498.70855439046	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88404944	88403102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88403502_88403702_88403770_88404359_88404435_88404536
ES_00061211	chr9	-	3185	1	FSM	ENSMUSG00000102533.2	ENSMUST00000191644.2	3255	1	97	-27	97	27	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAAACATTTGCTTAGG	NA	False	NA	NA	False	NA	NA	NA	88568142	88564957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_88565000_88568100
ES_00061215	chr9	-	325	2	FSM	ENSMUSG00000051234.7	ENSMUST00000128955.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	1105	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCTGTGGTAACCCAGG	3800	False	NA	NA	False	ATTAAA	-15	NA	96360641	96355914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_96356059_96360460
ES_00061223	chr9	-	1791	15	FSM	ENSMUSG00000032534.19	ENSMUST00000216281.2	1791	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	44.4853220461651	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCACAGCCACAGACGG	NA	False	NA	NA	False	NA	NA	NA	102503180	102464052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102498894_102498928_102500754_102500793_102503102
ES_00061226	chr9	-	7699	57	NNC	ENSMUSG00000032560.15	novel	8012	56	NA	NA	0	35211	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	41.6606147815847	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGCTGCCCTCAATACAA	NA	False	NA	NA	False	CATAAA	-37	NA	104140102	103993269	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_103993304_104028800_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357_104074561_104075828_104075934_104077635_104077738_104079086_104079150_104080370_104080531_104080613_104080718_104084951_104085106_104086503_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
ES_00061230	chr9	-	1293	14	FSM	ENSMUSG00000023262.14	ENSMUST00000214275.2	1284	14	0	-9	0	0	multi-exon	FALSE	canonical	2	9	junction_11	137.635441630778	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315387	106310179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106314087_106314153_106314827_106314937_106315331
ES_00061235	chr9	-	2692	20	FSM	ENSMUSG00000032580.13	ENSMUST00000194801.6	2691	20	0	-1	0	0	multi-exon	FALSE	canonical	3	17	junction_17	154.105011503965	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	NA	False	NA	-1	True	AAGAAA	-17	NA	107637762	107617693	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107634107_107634192_107636974_107637049_107637520
ES_00061239	chr9	-	2158	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTAAAGTTTTTTTTTT	7563	False	NA	NA	False	AATAAA	-23	NA	107749970	107650756	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
ES_00061244	chr9	-	633	2	FSM	ENSMUSG00000032590.15	ENSMUST00000192916.6	532	2	-101	0	-101	0	multi-exon	FALSE	canonical	3	197	junction_1	0	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTCTGTGCTGGTACT	NA	False	NA	-33	True	AATAAA	-13	NA	107963328	107962612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_107962877_107962959
ES_00061257	chr9	-	2693	8	ISM	ENSMUSG00000025646.10	ENSMUST00000161521.8	2381	12	-18	4446	1	3234	5prime_fragment	FALSE	canonical	3	126	junction_6	12.2407816210354	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTAATTTGGGAGTTGAG	NA	False	NA	NA	False	AAAAAG	-7	NA	108903138	108893298	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chr9_-_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ES_00061263	chr9	-	1188	4	FSM	ENSMUSG00000032491.15	ENSMUST00000196735.2	799	4	-12	-377	-12	4	multi-exon	TRUE	canonical	3	119	junction_3	4.54606056566195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTCCTTGGACCTGTA	8669	False	NA	-1	True	ATTAAA	-29	NA	110452402	110450198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154
ES_00061264	chr9	-	1058	5	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	1	4	combination_of_known_junctions	FALSE	canonical	2	9	junction_3	51.265851207212	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTCCTTGGACCTGTA	8946	False	NA	-1	True	ATTAAA	-29	NA	110453498	110450198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_110450806_110450907_110451051_110451139_110451183_110452154_110452304_110453382
ES_00061272	chr9	-	1754	5	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	-44	5358	multi-exon	FALSE	canonical	3	19	junction_3	16.422164899915	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGGTTCCCCATGTAT	NA	False	NA	NA	False	AATAAA	-17	NA	118235211	118226174	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chr9_-_118227447_118232126_118232223_118233371_118233558_118233797_118233891_118235104
ES_00061278	chr9	-	2980	25	NIC	ENSMUSG00000040936.16	novel	4200	35	NA	NA	3	40	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	5.47579902845238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTCTCCTGATAATGTA	NA	False	NA	NA	False	AATAAA	-22	NA	121106260	120985876	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chr9_-_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ES_00061282	chr9	-	7430	19	NNC	ENSMUSG00000025241.17	novel	7692	18	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.37638878602347	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTGGAGTAGCATTGT	9330	False	NA	-10	True	AATAAA	-12	NA	123680944	123618577	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chr9_-_123620860_123621098_123621815_123623789_123623900_123626581_123626793_123630286_123630383_123648111_123648257_123651382_123651595_123652242_123652393_123654570_123654739_123655610_123655730_123656149_123656243_123657240_123659545_123660351_123660443_123662162_123662307_123663857_123663965_123667936_123668063_123669606_123669714_123672523_123672674_123680845
ES_00061285	chr9	+	208	1	Intergenic	novelGene_4032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAATTTCCTTGAGAAGA	6608	False	NA	NA	False	NA	NA	NA	3342127	3342335	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_3342100_3342300
ES_00061286	chr9	+	3517	1	Intergenic	novelGene_4034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	804	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAACCAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	4286790	4290307	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_4286800_4290300
ES_00061287	chr9	+	226	1	Intergenic	novelGene_4048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCTAACTAAGACAGGG	NA	False	NA	52	True	NA	NA	NA	6846447	6846673	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_6846400_6846700
ES_00061288	chr9	+	201	1	Intergenic	novelGene_4059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTCGGGGCGGGGGTTG	NA	False	NA	NA	False	NA	NA	NA	7991811	7992012	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_7991800_7992000
ES_00061289	chr9	+	225	1	Intergenic	novelGene_4071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAACACATCTTACCAT	NA	False	NA	NA	False	NA	NA	NA	20361487	20361712	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_20361500_20361700
ES_00061290	chr9	+	202	1	Intergenic	novelGene_4084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATGTATATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	24733422	24733624	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_24733400_24733600
ES_00061291	chr9	+	200	1	Intergenic	novelGene_4091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAATAGTTTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	27050449	27050649	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_27050400_27050600
ES_00061292	chr9	+	293	1	Intergenic	novelGene_4092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAAGACAAACAAACCCTAG	2060	False	NA	NA	False	TATAAA	-30	NA	27319427	27319720	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_27319400_27319700
ES_00061293	chr9	+	214	1	Intergenic	novelGene_4093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTGCCCCTTTAATAGT	NA	False	NA	NA	False	NA	NA	NA	30469890	30470104	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_30469900_30470100
ES_00061294	chr9	+	203	1	Intergenic	novelGene_4096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGGTCAGGTAGAGAGG	9687	False	NA	NA	False	NA	NA	NA	31395898	31396101	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_31395900_31396100
ES_00061295	chr9	+	987	1	Intergenic	novelGene_4102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATAAGACAAAAGTGAGA	NA	False	NA	NA	False	ATTAAA	-15	NA	35962087	35963074	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_35962100_35963100
ES_00061296	chr9	+	243	1	Intergenic	novelGene_4109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCGAAAGTCTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	40045964	40046207	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_40046000_40046200
ES_00061297	chr9	+	211	1	Intergenic	novelGene_4116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCCTTTTGCACTC	NA	False	NA	NA	False	NA	NA	NA	43079964	43080175	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_43080000_43080200
ES_00061298	chr9	+	216	1	Intergenic	novelGene_4120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGAATTTCTTACCTA	1559	False	NA	NA	False	NA	NA	NA	44500701	44500917	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_44500700_44500900
ES_00061299	chr9	+	246	1	Intergenic	novelGene_4134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGGGAAAGCAAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	50541615	50541861	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_50541600_50541900
ES_00061301	chr9	+	318	1	Intergenic	novelGene_4145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATAGATGCTGCATGT	NA	False	NA	NA	False	AGTAAA	-33	NA	55254603	55254921	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_55254600_55254900
ES_00061302	chr9	+	206	1	Intergenic	novelGene_4151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACTAGGTATTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	56982030	56982236	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_56982000_56982200
ES_00061303	chr9	+	262	1	Intergenic	novelGene_4152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	738	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTGTAACAAGATCTGAC	2394	False	NA	NA	False	NA	NA	NA	57113263	57113525	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_57113300_57113500
ES_00061304	chr9	+	3146	1	Intergenic	novelGene_4154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAGACAGCAACACAA	NA	False	NA	NA	False	NA	NA	NA	57384468	57387614	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_57384500_57387600
ES_00061305	chr9	+	204	1	Intergenic	novelGene_4158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGCATTTTTACTGACT	2281	False	NA	NA	False	NA	NA	NA	59664250	59664454	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_59664200_59664500
ES_00061306	chr9	+	208	1	Intergenic	novelGene_4165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTGGAACTTCTTAATCA	9286	False	NA	NA	False	NA	NA	NA	62792815	62793023	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_62792800_62793000
ES_00061307	chr9	+	296	1	Intergenic	novelGene_4173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGCATATAATAAATAAATA	3610	False	NA	NA	False	NA	NA	NA	64182929	64183225	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_64182900_64183200
ES_00061308	chr9	+	219	1	Intergenic	novelGene_4176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTAAAACTAGACTTACAT	NA	False	NA	NA	False	AATAAA	-23	NA	64676225	64676444	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_64676200_64676400
ES_00061309	chr9	+	277	1	Intergenic	novelGene_4178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAAGTTCTGGGCTTGGC	NA	False	NA	NA	False	ACTAAA	-39	NA	65478743	65479020	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_65478700_65479000
ES_00061311	chr9	+	244	1	Intergenic	novelGene_4193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTTTTCTAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	71068799	71069043	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_71068800_71069000
ES_00061313	chr9	+	214	1	Intergenic	novelGene_4197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTTTACAAATTTTAAGT	9997	False	NA	NA	False	NA	NA	NA	72731539	72731753	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_72731500_72731800
ES_00061314	chr9	+	240	1	Intergenic	novelGene_4199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCAAGTCCTTTGGGG	7967	False	NA	NA	False	NA	NA	NA	73020116	73020356	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_73020100_73020400
ES_00061315	chr9	+	245	1	Intergenic	novelGene_4203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGATGTTTTTACAGG	1925	False	NA	NA	False	NA	NA	NA	75443471	75443716	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_75443500_75443700
ES_00061316	chr9	+	209	1	Intergenic	novelGene_4210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGTTTTCGAGACAG	NA	False	NA	4	True	NA	NA	NA	78278969	78279178	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_78279000_78279200
ES_00061317	chr9	+	211	1	Intergenic	novelGene_4222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGTCTGGTCACAGAAG	NA	False	NA	NA	False	NA	NA	NA	88376810	88377021	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chr9_+_88376800_88377000
ES_00061326	chrM	+	955	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	-3	True	NA	-47	True	NA	NA	NA	69	1024	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_100_1000
ES_00061327	chrM	+	1582	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGGTGGCAGAGCCAGG	-3	True	NA	34	True	AATAAA	-35	NA	1093	2675	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_1100_2700
ES_00061328	chrM	+	957	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3375	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATGTCTGATAAAAGAA	-2	True	NA	-17	True	NA	NA	NA	2750	3707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_2800_3700
ES_00061329	chrM	+	1038	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1561	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTAGGATATACTAGTC	-3	True	NA	-27	True	NA	NA	NA	3913	4951	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_3900_5000
ES_00061330	chrM	+	1614	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	0	-69	0	69	mono-exon	FALSE	NA	NA	NA	NA	NA	14828	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGATATTAGTAAAATCAAT	1	True	NA	NA	False	NA	NA	NA	5327	6941	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_5300_6900
ES_00061331	chrM	+	687	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	-1	True	NA	NA	False	ACTAAA	-38	NA	7012	7699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_7000_7700
ES_00061332	chrM	+	204	1	FSM	ENSMUSG00000064356.1	ENSMUST00000082407.1	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGATTCCCAATCGTTGTA	-11	True	NA	NA	False	ATTAAA	-44	NA	7765	7969	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_7800_8000
ES_00061333	chrM	+	681	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3559	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	150	False	NA	NA	False	AATACA	-4	NA	7926	8607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_7900_8600
ES_00061334	chrM	+	349	1	FSM	ENSMUSG00000064360.1	ENSMUST00000082411.1	348	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGTAATTAGTTTAAAAAAA	-2	True	NA	NA	False	AGTAAA	-1	NA	9458	9807	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_9500_9800
ES_00061335	chrM	+	297	1	FSM	ENSMUSG00000065947.1	ENSMUST00000084013.1	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCTTCCCTCACTA	-1	True	NA	NA	False	NA	NA	NA	9876	10173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_9900_10200
ES_00061336	chrM	+	1378	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1669	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	69	False	NA	13	True	NA	NA	NA	10166	11544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_10200_11500
ES_00061337	chrM	+	1824	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTCGATAATAATAAAAATA	-4	True	NA	-12	True	NA	NA	NA	11741	13565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_11700_13600
ES_00061338	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	12	True	ACTAAA	-12	NA	14144	15288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_14100_15300
ES_00061339	chrM	+	1011	1	FSM	ENSMUSG00000064371.1	ENSMUST00000082422.1	67	1	0	-944	0	944	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		539	False	NA	NA	False	AATAAA	-10	NA	15288	16299	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_+_15300_16300
ES_00061340	chrM	-	519	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAGTATAAGATAATAATT	-3	True	NA	NA	False	NA	NA	NA	14070	13551	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrM_-_13600_14100
ES_00061342	chrUn_GL456367v1	+	1163	1	Intergenic	novelGene_4259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGACTGATGGATGATGA	NA	False	NA	NA	False	NA	NA	NA	4674	5837	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_GL456367v1_+_4700_5800
ES_00061343	chrUn_GL456367v1	-	244	2	Intergenic	novelGene_4257	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	524	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCCAATGTTCGTTTC	NA	False	NA	NA	False	NA	NA	NA	3004	2713	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_GL456367v1_-_2848_2894
ES_00061344	chrUn_GL456367v1	+	203	1	Intergenic	novelGene_4258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAATTCTTATCCTAGAA	NA	False	NA	NA	False	NA	NA	NA	3867	4070	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_GL456367v1_+_3900_4100
ES_00061345	chrUn_GL456367v1	+	371	1	Intergenic	novelGene_4260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	363	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTAAGGGACCCTTACCAA	NA	False	NA	NA	False	NA	NA	NA	6304	6675	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_GL456367v1_+_6300_6700
ES_00061351	chrUn_GL456379v1	+	391	1	Intergenic	novelGene_4261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAATGATAGCTAGGACA	NA	False	NA	NA	False	CATAAA	-4	NA	29395	29786	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_GL456379v1_+_29400_29800
ES_00061352	chrUn_GL456382v1	+	582	1	Intergenic	novelGene_4262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATATATGATATTTGATA	NA	False	NA	NA	False	NA	NA	NA	14177	14759	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_GL456382v1_+_14200_14800
ES_00061353	chrUn_JH584304v1	+	4983	9	Intergenic	novelGene_4263	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	10	junction_1	14.4086562524061	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGATCTGAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	4975	35500	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_+_5089_14083_14202_19242_19346_20219_20377_24796_24959_26983_27055_28052_28146_29421_29520_31432
ES_00061355	chrUn_JH584304v1	-	3035	7	Intergenic	novelGene_4264	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	296	junction_1	199.023170063745	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATCTTCTGTCTTCCCC	NA	False	NA	-35	True	AATAAA	-20	NA	60328	52188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
ES_00061356	chrUn_JH584304v1	-	2529	8	Intergenic	novelGene_4265	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	14	junction_7	287.765706853364	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATCTTCTGTCTTCCCC	NA	False	NA	-35	True	AATAAA	-20	NA	61502	52188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591_59702_61381
ES_00061357	chrUn_JH584304v1	-	2080	6	Intergenic	novelGene_4266	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_4	325.957420532192	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAATCTTCTGTCTTCCC	NA	False	NA	-36	True	AATAAA	-19	NA	59000	52189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55249_55464_55702_58563
ES_00061358	chrUn_JH584304v1	-	3298	9	Intergenic	novelGene_4269	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	95	junction_2	313.016348414903	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAACAATCTTCTGTCTTC	NA	False	NA	-38	True	AATAAA	-17	NA	60190	52191	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_53833_54318_54480_54720_54868_55111_55249_55511_55702_56985_57152_57410_58836_59591
ES_00061360	chrUn_JH584304v1	-	2726	5	Intergenic	novelGene_4272	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_3	340.077197118537	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	59004	52668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_58563
ES_00061365	chrUn_JH584304v1	-	2330	5	Intergenic	novelGene_4267	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_4	303.306260238723	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAATCTTCTGTCTTCCC	NA	False	NA	-36	True	AATAAA	-19	NA	59034	52189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_58563
ES_00061366	chrUn_JH584304v1	-	2394	8	Intergenic	novelGene_4268	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_4	253.292442099029	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAATCTTCTGTCTTCCC	NA	False	NA	-36	True	AATAAA	-19	NA	59951	52189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55249_55511_55702_56985_57152_58563_58836_59591
ES_00061367	chrUn_JH584304v1	-	2526	9	Intergenic	novelGene_4275	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	95	junction_1	328.803037546796	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAACTGCTTTCTGCTCCC	NA	False	NA	-74	True	NA	NA	NA	60328	53205	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54720_54868_55111_55249_55511_55702_56985_57152_57410_57500_58563_58836_59591
ES_00061369	chrUn_JH584304v1	-	3174	5	Intergenic	novelGene_4273	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_4	148.706716391695	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	59023	52668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_58563
ES_00061375	chrUn_JH584304v1	-	2251	10	Intergenic	novelGene_4270	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_9	328.470867979355	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACCTACGCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	61419	52328	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55249_55464_55702_56985_57152_57410_57500_58563_58836_59591_59774_61381
ES_00061376	chrUn_JH584304v1	-	3191	3	Intergenic	novelGene_4271	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_2	336.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	58965	52668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_58563
ES_00061377	chrUn_JH584304v1	-	3211	6	Intergenic	novelGene_4274	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_4	134.863783129497	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	59816	52668	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
ES_00061378	chrUn_MU069435v1	+	587	1	Intergenic	novelGene_4276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCGGGCTTTCCCGTGG	NA	False	NA	27	True	NA	NA	NA	0	587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_MU069435v1_+_0_600
ES_00061380	chrUn_MU069435v1	+	1226	2	Intergenic	novelGene_4277	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	358	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCTAAATTCTCTCACAG	NA	False	NA	NA	False	AATAAA	-43	NA	2866	7656	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_MU069435v1_+_3670_7233
ES_00061382	chrUn_MU069435v1	+	484	2	Intergenic	novelGene_4279	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCACCATATACTCAATAA	NA	False	NA	NA	False	NA	NA	NA	14031	15252	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_MU069435v1_+_14170_14906
ES_00061384	chrUn_MU069435v1	+	423	1	Intergenic	novelGene_4278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCTCACCAGCCCGGGA	NA	False	NA	NA	False	NA	NA	NA	6324	6747	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_MU069435v1_+_6300_6700
ES_00061385	chrUn_MU069435v1	+	348	1	Intergenic	novelGene_4280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTTTATGATTTTAGCT	NA	False	NA	NA	False	NA	NA	NA	27661	28009	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrUn_MU069435v1_+_27700_28000
ES_00061394	chrX	+	2970	2	FSM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	66	0	66	0	multi-exon	FALSE	canonical	3	23	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCAATAAGATCCTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	5959572	5967164	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_5960459_5965080
ES_00061395	chrX	+	506	1	FSM	ENSMUSG00000082109.2	ENSMUST00000121251.2	591	1	2	83	2	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAAGCGCCGGGAGGAG	NA	False	NA	NA	False	AAGAAA	-2	NA	5983277	5983783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_5983300_5983800
ES_00061396	chrX	+	8261	9	FSM	ENSMUSG00000068270.16	ENSMUST00000103005.10	4839	9	196	-3618	196	7	multi-exon	FALSE	canonical	2	6	junction_3	2.54644359843292	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCTCTGATGTTTTGCT	NA	False	NA	NA	False	AATAAA	-21	NA	6312103	6549509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_6312316_6432846_6432999_6492882_6493018_6495245_6497710_6503009_6503072_6535713_6536491_6541154_6541336_6544276_6544547_6545501
ES_00061397	chrX	+	7926	8	FSM	ENSMUSG00000068270.16	ENSMUST00000089520.3	8201	8	275	0	275	0	multi-exon	FALSE	canonical	1	1	junction_1	3.98978286964827	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGACTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-14	NA	6489614	6549502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_6489651_6492882_6493018_6495245_6497710_6503009_6503072_6535713_6536491_6541154_6541336_6544276_6544547_6545501
ES_00061398	chrX	+	2554	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	-25	-228	-25	0	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGATGTAGCTCAGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	7523473	7534425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
ES_00061399	chrX	+	2627	6	FSM	ENSMUSG00000031145.16	ENSMUST00000123172.3	2487	6	412	-552	412	319	multi-exon	FALSE	canonical	3	70	junction_3	4.22374241638858	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGCAGGAGGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	7529413	7534744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
ES_00061400	chrX	+	3557	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	22	0	22	0	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGCATTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	7563391	7576501	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ES_00061401	chrX	+	3098	5	FSM	ENSMUSG00000031148.15	ENSMUST00000129845.2	674	5	-366	-2058	-366	3	multi-exon	FALSE	canonical	3	223	junction_3	16.7984374273323	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCATTTGTGTTATCTCT	527	False	NA	NA	False	NA	NA	NA	7571725	7576504	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ES_00061402	chrX	+	711	6	FSM	ENSMUSG00000039382.13	ENSMUST00000156000.8	711	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	75.5184745608649	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAAGACCCAGATTTGC	3762	False	NA	NA	False	AAGAAA	-36	NA	7588211	7592531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7588470_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436
ES_00061403	chrX	+	1609	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGGGGCGTGCTTTCCCG	4006	False	NA	22	True	AATAAA	-35	NA	7588455	7594445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ES_00061404	chrX	+	1511	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115688.8	1510	11	-1	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	67.1240642392875	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4038	False	NA	-2	True	AATAAA	-11	NA	7588487	7594421	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593450_7593511_7593585_7593732_7593988
ES_00061405	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	4038	False	NA	17	True	AATAAA	-30	NA	7588487	7594440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ES_00061407	chrX	+	1978	11	NIC	ENSMUSG00000039382.13	novel	955	8	NA	NA	256	-16	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	55.2814616304598	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAAGGCCTTTGAGTGG	4972	False	NA	-18	True	TTTAAA	-40	NA	7589421	7594405	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ES_00061410	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1170	False	NA	7	True	AATAAA	-20	NA	7594677	7597303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7595002_7595954_7596173_7596506
ES_00061411	chrX	+	220	1	FSM	ENSMUSG00000082617.4	ENSMUST00000121084.2	285	1	69	-4	69	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCCTAGCCGGGCGTGGT	NA	False	NA	NA	False	AAAAAG	-1	NA	7618437	7618657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7618400_7618700
ES_00061412	chrX	+	3349	10	FSM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	-72	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	30.4046780026437	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7628824	7641441	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ES_00061413	chrX	+	3169	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	-6	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628896	7641438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ES_00061414	chrX	+	3257	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115679.8	3239	10	-18	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	88.3978101510788	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7628896	7641440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7629300_7631745_7631860_7632812_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ES_00061416	chrX	+	2951	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	-8	0	8	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7630189	7641440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ES_00061419	chrX	+	3027	26	FSM	ENSMUSG00000031153.17	ENSMUST00000115675.9	3015	26	-12	0	-11	0	multi-exon	FALSE	canonical	2	9	junction_12	17.6906755099968	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3248	False	NA	7	True	NA	NA	NA	7656221	7686802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ES_00061420	chrX	+	2937	25	FSM	ENSMUSG00000031153.17	ENSMUST00000065932.14	3156	25	218	1	-11	-1	multi-exon	FALSE	canonical	2	42	junction_24	10.7256669049321	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGGTCTCATTCTTTT	3248	False	NA	10	True	NA	NA	NA	7656221	7686805	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ES_00061422	chrX	+	2995	24	FSM	ENSMUSG00000031153.17	ENSMUST00000132456.8	2972	24	-23	0	0	0	multi-exon	FALSE	canonical	3	50	junction_7	9.87406524493573	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTCCCCTCCTCTAGC	3260	False	NA	NA	False	NA	NA	NA	7656233	7686195	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405
ES_00061423	chrX	+	2882	24	FSM	ENSMUSG00000031153.17	ENSMUST00000101694.10	2867	24	-15	0	-1	0	multi-exon	FALSE	canonical	2	9	junction_3	21.1150418078725	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3258	False	NA	7	True	NA	NA	NA	7656231	7686802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ES_00061424	chrX	+	1277	10	ISM	ENSMUSG00000031153.17	ENSMUST00000140540.2	1423	15	5	7610	-1	-5942	5prime_fragment	FALSE	canonical	3	9	junction_3	27.7413093943595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTGAGATGAAGTAGA	3282	False	NA	NA	False	TATAAA	-20	NA	7656255	7671112	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598
ES_00061426	chrX	+	5193	6	FSM	ENSMUSG00000009731.5	ENSMUST00000009875.5	5287	6	-12	106	-12	-106	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCAATCTTGGATTCAGA	NA	False	NA	NA	False	NA	NA	NA	7688515	7704413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
ES_00061427	chrX	+	4612	10	FSM	ENSMUSG00000031154.16	ENSMUST00000115668.10	2543	10	-737	-1332	-19	2	multi-exon	FALSE	canonical	3	78	junction_1	125.359138399428	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATCTTGTTTGTGTGTGT	NA	False	NA	18	True	AATAAA	-27	NA	7707583	7742861	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7708708_7708836_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ES_00061428	chrX	+	4655	10	NIC	ENSMUSG00000031154.16	novel	2543	10	NA	NA	-19	2	intron_retention	FALSE	canonical	3	18	junction_1	143.100931314963	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATCTTGTTTGTGTGTGT	NA	False	NA	18	True	AATAAA	-27	NA	7707583	7742861	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7707640_7707725_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ES_00061430	chrX	+	2471	9	FSM	ENSMUSG00000031154.16	ENSMUST00000115666.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	127.394073645519	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAACAAATCAAAAAGAATA	NA	False	NA	NA	False	ATTAAA	-21	NA	7708094	7741099	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740468
ES_00061431	chrX	+	2460	9	NNC	ENSMUSG00000031154.16	novel	2471	9	NA	NA	1	-7	intron_retention	FALSE	canonical	3	37	junction_1	178.510810246887	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACAAAATCAACAAATCAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	7708095	7741092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_7708950_7722545_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740468
ES_00061433	chrX	+	2068	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	-23	0	17	0	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGATTGCCATTTATAGAA	NA	False	NA	5	True	AATAAA	-15	NA	7744517	7749671	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
ES_00061434	chrX	+	2974	4	FSM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	85	35	74	-3	multi-exon	FALSE	canonical	3	84	junction_1	9.0921211313239	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAGTTGGGTTGGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	7750351	7760696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378
ES_00061435	chrX	+	2381	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGCTGTTTGTC	1189	False	NA	2	True	NA	NA	NA	7765595	7774590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ES_00061436	chrX	+	2195	3	FSM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	43	junction_1	26.5	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCGGAGAGGGAAATC	NA	False	NA	NA	False	AATAAA	-17	NA	7786058	7790649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7786284_7788286_7788754_7789146
ES_00061437	chrX	+	615	1	FSM	ENSMUSG00000083518.2	ENSMUST00000117804.2	868	1	763	-510	763	510	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTGTTGTTGTTGT	1803	False	NA	NA	False	AATAAA	-13	NA	7901213	7901828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7901200_7901800
ES_00061438	chrX	+	211	1	FSM	ENSMUSG00000068243.7	ENSMUST00000119726.2	171	1	-40	0	-40	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACCTTGAATGGATTCGA	5668	False	NA	NA	False	CATAAA	-11	NA	7913427	7913638	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7913400_7913600
ES_00061439	chrX	+	1449	4	FSM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	38.6091526281874	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7727	False	NA	29	True	TATAAA	-19	NA	7915486	7939198	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7938585
ES_00061441	chrX	+	2076	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	-899	0	-764	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGCCTGCAAATACCATT	NA	False	NA	NA	False	NA	NA	NA	7917829	7940094	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
ES_00061442	chrX	+	680	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	12	1767	12	-1052	5prime_fragment	FALSE	canonical	3	56	junction_1	9.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCAGGTGTTTTCTGAG	NA	False	NA	15	True	NA	NA	NA	7917841	7937428	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_7917897_7926454_7926526_7936874
ES_00061443	chrX	+	1097	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	NA	False	NA	29	True	TATAAA	-19	NA	7917841	7939198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7917897_7936874_7937304_7938585
ES_00061444	chrX	+	839	3	FSM	ENSMUSG00000055188.13	ENSMUST00000124018.8	839	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGAAATATCTTTATT	NA	False	NA	NA	False	AATACA	-14	NA	8011667	8014203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8011971_8012730_8012858_8013794
ES_00061445	chrX	+	212	2	Antisense	novelGene_ENSMUSG00000031169.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATAGCCATCTTCTTTCT	1306	False	NA	NA	False	NA	NA	NA	8048502	8097643	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_+_8048548_8097476
ES_00061446	chrX	+	369	1	FSM	ENSMUSG00000082496.4	ENSMUST00000119961.2	360	1	-9	0	-9	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTTTCCAGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	8520694	8521063	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8520700_8521100
ES_00061447	chrX	+	2527	1	FSM	ENSMUSG00000052364.5	ENSMUST00000064196.5	2583	1	41	15	41	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAAGTTCCCCATTTCG	NA	False	NA	NA	False	AATACA	-10	NA	8758661	8761188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8758700_8761200
ES_00061448	chrX	+	1244	1	FSM	ENSMUSG00000080051.3	ENSMUST00000116165.3	1092	1	-572	420	-572	-420	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCCCGAGTCCAAATCT	NA	False	NA	NA	False	NA	NA	NA	8824978	8826222	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8825000_8826200
ES_00061449	chrX	+	841	1	FSM	ENSMUSG00000071815.7	ENSMUST00000096509.7	841	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	6682	False	NA	31	True	AATAAA	-31	NA	8899731	8900572	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8899700_8900600
ES_00061450	chrX	+	879	1	FSM	ENSMUSG00000083714.4	ENSMUST00000120058.2	516	1	-195	-168	-195	168	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAAAATTGATGTTTAAA	NA	False	NA	NA	False	AATAAA	-31	NA	8909770	8910649	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8909800_8910600
ES_00061451	chrX	+	874	2	Genic_Genomic	ENSMUSG00000072249.4	novel	847	1	NA	NA	-19476	-8	multi-exon	TRUE	canonical	3	217	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGAAGTATCAAATTGA	NA	False	NA	22	True	AATAAA	-22	NA	8909777	8930092	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_8909865_8929305
ES_00061452	chrX	+	902	1	FSM	ENSMUSG00000072249.4	ENSMUST00000097029.4	847	1	-59	4	-59	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTATCAAATTGATGCT	NA	False	NA	26	True	AATAAA	-26	NA	8929194	8930096	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8929200_8930100
ES_00061453	chrX	+	5213	3	FSM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	-139	2	-139	-2	multi-exon	FALSE	canonical	3	33	junction_2	9.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCATTTTATTTCTT	NA	False	NA	7	True	AATAAA	-17	NA	9138855	9179487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_9139474_9148235_9148499_9175155
ES_00061454	chrX	+	1732	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	1	0	-1	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGTGGTTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	10351396	10462843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
ES_00061455	chrX	+	588	1	FSM	ENSMUSG00000068200.7	ENSMUST00000121308.2	477	1	35	-146	35	146	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGTCTTTTGTATTTTT	8170	False	NA	NA	False	NA	NA	NA	10526795	10527383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_10526800_10527400
ES_00061456	chrX	+	265	1	Intergenic	novelGene_4299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGATCCAACGTTGGCCA	8753	False	NA	NA	False	NA	NA	NA	10527378	10527643	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_10527400_10527600
ES_00061457	chrX	+	2171	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	-133	-16	-133	16	multi-exon	FALSE	canonical	3	75	junction_1	0	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTGCTCTTTAATCC	1346	False	NA	NA	False	AATAAA	-31	NA	10583495	10585945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_10583944_10584222
ES_00061458	chrX	+	1964	2	FSM	ENSMUSG00000008035.13	ENSMUST00000156321.2	431	2	-211	-1322	-133	16	multi-exon	FALSE	canonical	1	2	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTGCTCTTTAATCC	1346	False	NA	NA	False	AATAAA	-31	NA	10583495	10585945	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_10583740_10584225
ES_00061459	chrX	+	2109	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	-14	-76	-14	76	multi-exon	FALSE	canonical	3	265	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCTGACATTAAGTGTT	1465	False	NA	NA	False	ATTAAA	-16	NA	10583614	10586005	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_10583944_10584225
ES_00061460	chrX	+	2324	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGGTTACAGTTTTAT	NA	False	NA	84	True	AATAAA	-19	NA	12454039	12483288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ES_00061462	chrX	+	1900	1	FSM	ENSMUSG00000083307.2	ENSMUST00000121924.2	1257	1	-228	-415	-228	415	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTCTCTGTGTGTTG	NA	False	NA	11	True	AATAAA	-36	NA	12802882	12804782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_12802900_12804800
ES_00061463	chrX	+	12149	47	Fusion	ENSMUSG00000031010.18_ENSMUSG00000087424.2	novel	1452	7	NA	NA	-171	0	multi-exon	TRUE	canonical	3	31	junction_2	270.94939241751	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	NA	False	NA	NA	False	AATAAA	-16	NA	12908082	13039567	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_12908349_12909795_12909896_12919473_12919590_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00061464	chrX	+	12348	47	Fusion	ENSMUSG00000031010.18_ENSMUSG00000087424.2	novel	1452	7	NA	NA	-156	166	multi-exon	FALSE	canonical	3	31	junction_2	290.879203876174	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCGTTTACTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	12908097	13039733	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_12908349_12909795_12909896_12919473_12919590_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031772_13032870_13032967_13035585
ES_00061468	chrX	+	12518	45	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	-23	0	intron_retention	FALSE	canonical	3	336	junction_13	184.407752028662	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	784	False	NA	NA	False	AATAAA	-16	NA	12937713	13039567	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00061470	chrX	+	11887	45	FSM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	219.011541405002	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	823	False	NA	NA	False	AATAAA	-16	NA	12937752	13039567	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_12937973_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00061471	chrX	+	11989	46	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	336	junction_14	190.839489145418	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	832	False	NA	NA	False	AATAAA	-16	NA	12937761	13039567	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00061472	chrX	+	12008	46	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	383	junction_14	188.080668272361	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	828	False	NA	NA	False	AATAAA	-16	NA	12937757	13039567	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00061475	chrX	+	1452	7	FSM	ENSMUSG00000031010.18	ENSMUST00000133997.4	1452	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	424.739004827932	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAACATCAACAAAACAGCC	NA	False	NA	NA	False	AGTAAA	-1	NA	13027095	13036137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031772_13032870_13032967_13035585
ES_00061476	chrX	+	3980	1	FSM	ENSMUSG00000094574.2	ENSMUST00000120922.2	138	1	1	-3843	1	3843	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	3654	False	NA	NA	False	AATAAA	-16	NA	13045682	13049662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_13045700_13049700
ES_00061477	chrX	+	4026	1	FSM	ENSMUSG00000094259.2	ENSMUST00000118324.2	138	1	1	-3889	1	3889	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTAGGGTTGGCATGCCTA	NA	False	NA	NA	False	NA	NA	NA	13055777	13059803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_13055800_13059800
ES_00061478	chrX	+	1448	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-143	-95	-143	95	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACACAACTCTTGAGACAC	NA	False	NA	NA	False	NA	NA	NA	13068666	13070114	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_13068700_13070100
ES_00061479	chrX	+	272	1	FSM	ENSMUSG00000082090.2	ENSMUST00000119074.2	1227	1	182	773	182	-773	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGCTTGTGTGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	13104747	13105019	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_13104700_13105000
ES_00061480	chrX	+	4692	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147208	13160291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ES_00061481	chrX	+	4626	17	NNC	ENSMUSG00000000787.13	novel	4692	17	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_15	119.100125288557	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147271	13160291	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157404_13157542_13157651
ES_00061482	chrX	+	228	1	FSM	ENSMUSG00000082838.2	ENSMUST00000118490.2	312	1	52	32	52	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACTACAATATGATGACT	NA	False	NA	NA	False	NA	NA	NA	15231469	15231697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_15231500_15231700
ES_00061483	chrX	+	4167	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGGCTTCTCTGATTTG	NA	False	NA	21	True	AATAAA	-22	NA	16485936	16554057	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
ES_00061484	chrX	+	6915	29	FSM	ENSMUSG00000037369.18	ENSMUST00000044484.13	5918	29	0	-997	0	997	multi-exon	FALSE	canonical	3	111	junction_13	32.5682955886706	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTTTACTTCAACTAACA	NA	False	NA	NA	False	AATAGA	-21	NA	18028813	18147172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ES_00061485	chrX	+	5935	29	FSM	ENSMUSG00000037369.18	ENSMUST00000052368.9	5935	29	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_28	44.1203710643637	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGACTCATCATTTTTT	NA	False	NA	NA	False	AATACA	-17	NA	18028813	18146175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143803_18144864
ES_00061486	chrX	+	5330	28	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	9	-444	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	40.8616387994563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAAATTGTTTAATGT	NA	False	NA	-20	True	AATAAA	-26	NA	18028822	18145731	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ES_00061487	chrX	+	7051	29	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	-115	997	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	44.6303982614943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTTTACTTCAACTAACA	NA	False	NA	NA	False	AATAGA	-21	NA	18028698	18147172	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ES_00061488	chrX	+	6214	30	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	0	140	combination_of_known_junctions	FALSE	canonical	3	16	junction_13	47.6051186808053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGATTATGTTACCATT	NA	False	NA	NA	False	NA	NA	NA	18028813	18146315	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ES_00061489	chrX	+	353	1	FSM	ENSMUSG00000080998.2	ENSMUST00000120313.2	463	1	161	-51	161	51	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATCATTTAAAAA	NA	False	NA	NA	False	AATATA	-17	NA	19760056	19760409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_19760100_19760400
ES_00061490	chrX	+	4350	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	67	0	-11	0	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGATGTCTATACTT	NA	False	NA	3	True	AATAAA	-18	NA	20230786	20267092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ES_00061491	chrX	+	4778	13	NNC	ENSMUSG00000037315.16	novel	2472	10	NA	NA	-331	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	41.5759011394288	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20291595	20386178	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20291651_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
ES_00061492	chrX	+	4866	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20291926	20386178	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
ES_00061493	chrX	+	258	1	Intergenic	novelGene_4317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGATTGGCAGGATCAA	NA	False	NA	NA	False	NA	NA	NA	20401279	20401537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_20401300_20401500
ES_00061494	chrX	+	3564	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	93.2983708932913	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	394	False	NA	41	True	AATAAA	-29	NA	20483860	20517140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ES_00061495	chrX	+	3393	24	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_4	89.4718170663217	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCATTTCTACTTTCT	549	False	NA	28	True	AATAAA	-16	NA	20484015	20517127	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ES_00061496	chrX	+	3172	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	72.7799809002085	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	555	False	NA	41	True	AATAAA	-29	NA	20484021	20517140	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ES_00061497	chrX	+	3149	23	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	194	junction_9	67.1727297333874	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCATTTCTACTTTCT	562	False	NA	28	True	AATAAA	-16	NA	20484028	20517127	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ES_00061498	chrX	+	206	1	Intergenic	novelGene_4318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1850	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGCCTTTGCTTCTC	7943	False	NA	NA	False	NA	NA	NA	20491409	20491615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_20491400_20491600
ES_00061499	chrX	+	4047	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	-6	3	-6	-3	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGTGCTAAGTTCGCAT	NA	False	NA	NA	False	NA	NA	NA	20524558	20549415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ES_00061502	chrX	+	4072	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	-1	0	-1	0	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20529135	20549418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ES_00061503	chrX	+	797	4	FSM	ENSMUSG00000031065.15	ENSMUST00000132365.2	797	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	801.556957149993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTAGCCGGCGCCTCC	1905	False	NA	NA	False	NA	NA	NA	20554237	20560601	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20554601_20559562_20559771_20560276_20560411_20560509
ES_00061504	chrX	+	3140	16	FSM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	-20	0	-20	0	multi-exon	FALSE	canonical	3	1538	junction_15	84.886172149663	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	2304	False	NA	18	True	ATTAAA	-20	NA	20554636	20566119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20555046_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ES_00061505	chrX	+	3467	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570144	20586778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ES_00061506	chrX	+	1117	7	FSM	ENSMUSG00000031066.11	ENSMUST00000127294.8	801	7	-212	-104	-184	104	multi-exon	FALSE	canonical	3	30	junction_2	100.550843965738	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGCCTTAGCTCATAAG	NA	False	NA	NA	False	NA	NA	NA	20569960	20579496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353
ES_00061508	chrX	+	3976	19	FSM	ENSMUSG00000031066.11	ENSMUST00000149960.2	3976	19	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	33.2123731220017	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGCTGTTTTGAGTG	NA	False	NA	1	True	NA	NA	NA	20578063	20586776	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ES_00061509	chrX	+	1916	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-5	-127	combination_of_known_junctions	TRUE	non_canonical	1	66	junction_12	96.2243674382372	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTCAGCGCAGCCCGT	1118	False	NA	NA	False	NA	NA	NA	20664047	20726320	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ES_00061510	chrX	+	1560	6	ISM	ENSMUSG00000001127.13	ENSMUST00000136451.8	2439	17	1	7593	1	0	5prime_fragment	FALSE	canonical	3	74	junction_1	119.456100723236	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	1124	False	NA	NA	False	AATAAA	-27	NA	20664053	20719143	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ES_00061511	chrX	+	1001	7	NNC	ENSMUSG00000001127.13	novel	826	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	124.993333155546	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	6275	False	NA	NA	False	AATAAA	-27	NA	20714783	20719143	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
ES_00061512	chrX	+	2875	5	FSM	ENSMUSG00000001127.13	ENSMUST00000122312.8	2854	5	-21	0	2	0	multi-exon	FALSE	canonical	3	322	junction_3	33.6600653594137	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	6275	False	NA	NA	False	AATAAA	-27	NA	20714783	20719143	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ES_00061513	chrX	+	2600	10	FSM	ENSMUSG00000001127.13	ENSMUST00000152955.8	2581	10	-19	0	2	0	multi-exon	FALSE	canonical	3	168	junction_6	87.3856218927361	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6275	False	NA	NA	False	NA	NA	NA	20714783	20721749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151
ES_00061514	chrX	+	2356	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	2	0	2	0	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6275	False	NA	23	True	NA	NA	NA	20714783	20726758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ES_00061516	chrX	+	1543	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	-23	0	-9	0	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6285	False	NA	NA	False	AATAAA	-12	NA	20714793	20719128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ES_00061517	chrX	+	883	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTTCTGTATAGTGT	NA	False	NA	16	True	AATAAA	-17	NA	20736404	20740972	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ES_00061518	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	False	NA	18	True	AATAAA	-19	NA	20736459	20740974	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ES_00061519	chrX	+	1144	6	FSM	ENSMUSG00000086877.8	ENSMUST00000123462.8	1144	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	58.2594198391985	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTTTATTGTACATCA	NA	False	NA	NA	False	ATTAAA	-17	NA	20827922	20852962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20827952_20828088_20828218_20828775_20828897_20833967_20834048_20851664_20851705_20852217
ES_00061520	chrX	+	1412	4	FSM	ENSMUSG00000086877.8	ENSMUST00000136447.2	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.8057117628931	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCATGAATGCTATTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	20828352	20852976	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20828897_20833967_20834048_20851664_20851705_20852228
ES_00061521	chrX	+	618	6	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	1	587	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_1	45.9451847313731	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTAAATGTTGTTTTTTA	NA	False	NA	-18	True	NA	NA	NA	20828353	20853563	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20828369_20828775_20828835_20833967_20834048_20851664_20851705_20852217_20852400_20853321
ES_00061522	chrX	+	1952	4	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	12	603	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_3	34.9221356098901	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGATTTGCCATGGT	NA	False	NA	-2	True	NA	NA	NA	20828364	20853579	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852217
ES_00061523	chrX	+	4177	20	FSM	ENSMUSG00000036769.15	ENSMUST00000035766.13	4167	20	-10	0	-10	0	multi-exon	FALSE	canonical	3	33	junction_8	9.86248944541599	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559279	23672229	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ES_00061524	chrX	+	4003	21	FSM	ENSMUSG00000036769.15	ENSMUST00000101670.3	4002	21	-23	22	-4	13	multi-exon	FALSE	canonical	3	24	junction_1	11.664475984801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTCTTAATTTGACTTT	NA	False	NA	NA	False	AATAAA	-2	NA	23559311	23672242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_23559509_23559663_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ES_00061525	chrX	+	3519	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	-1	-2168	-1	2168	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACATTTTA	NA	False	NA	NA	False	AATAAA	-37	NA	32943122	32946641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_32943100_32946600
ES_00061526	chrX	+	6876	54	NIC	ENSMUSG00000031093.15	novel	6665	53	NA	NA	-178	0	combination_of_known_junctions	TRUE	canonical	1	53	junction_53	22.4821593760484	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGTAATTCGAAGTGAAG	NA	False	NA	2	True	AATAAA	-14	NA	35152306	35340209	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35273595_35273635_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
ES_00061527	chrX	+	6665	53	FSM	ENSMUSG00000031093.15	ENSMUST00000033419.13	6665	53	0	0	0	0	multi-exon	FALSE	canonical	1	53	junction_52	21.5813446724207	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCGAAGTGAAGGAAATA	NA	False	NA	8	True	AATAAA	-20	NA	35152484	35340215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
ES_00061528	chrX	+	6047	49	FSM	ENSMUSG00000031093.15	ENSMUST00000115266.8	6047	49	0	0	0	0	multi-exon	FALSE	canonical	1	53	junction_48	23.2696209770737	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGTAATTCGAAGTGAAG	NA	False	NA	2	True	AATAAA	-14	NA	35211049	35340209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35273595_35273635_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
ES_00061529	chrX	+	3732	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	-20	0	-20	0	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTGGTC	NA	False	NA	NA	False	AATAAA	-24	NA	35375742	35434912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
ES_00061530	chrX	+	2857	11	FSM	ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	54	0	54	0	multi-exon	FALSE	canonical	3	28	junction_3	7.36478105580879	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCATACTTCTTTCTG	NA	False	NA	NA	False	TATAAA	-15	NA	35592059	35625994	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35593053_35596168_35596288_35598864_35598988_35605275_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
ES_00061531	chrX	+	417	1	FSM	ENSMUSG00000119926.1	ENSMUST00000122667.3	104	1	5	-318	5	318	mono-exon	FALSE	NA	NA	NA	NA	NA	911	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCATGGGGCGCTGATTC	NA	False	NA	NA	False	NA	NA	NA	35627556	35627973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35627600_35628000
ES_00061532	chrX	+	1857	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	42	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1668	False	NA	NA	False	AATAAA	-15	NA	35861858	35869732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35862268_35865773_35865930_35868440
ES_00061533	chrX	+	592	1	FSM	ENSMUSG00000081281.2	ENSMUST00000118173.2	797	1	51	154	51	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAATGCTTCAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	35931920	35932512	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35931900_35932500
ES_00061534	chrX	+	1111	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTGACTAGAACTAC	NA	False	NA	NA	False	AAAACA	-13	NA	36007311	36040855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
ES_00061535	chrX	+	1252	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	-12	0	12	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTTTCCATATAAGAGT	NA	False	NA	41	True	AATAAA	-43	NA	36059303	36062472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ES_00061537	chrX	+	1726	6	FSM	ENSMUSG00000016308.13	ENSMUST00000016452.11	1732	6	6	0	6	0	multi-exon	FALSE	canonical	3	837	junction_1	46.7435557055729	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTTCACACTTTTATTA	NA	False	NA	7	True	AATAAA	-16	NA	36137953	36147875	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ES_00061538	chrX	+	719	5	FSM	ENSMUSG00000016308.13	ENSMUST00000202812.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	845	junction_1	46.1702014290603	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATCTCATCTCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	36138305	36147039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ES_00061539	chrX	+	1980	3	FSM	ENSMUSG00000016308.13	ENSMUST00000201050.2	603	3	-406	-971	-406	4	multi-exon	FALSE	canonical	3	893	junction_2	36.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCACACTTTTATTAACTT	NA	False	NA	11	True	AATAAA	-20	NA	36144723	36147879	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36145400_36146251_36146341_36146664
ES_00061540	chrX	+	223	2	Antisense	novelGene_ENSMUSG00000093059.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	196	junction_1	0	1555	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCAGCTGTCCTAGAAA	NA	False	NA	NA	False	NA	NA	NA	36298954	36344447	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_+_36299006_36344275
ES_00061541	chrX	+	4240	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-18	8	-18	-8	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTCATATTTTTAATG	NA	False	NA	16	True	AATAAA	-16	NA	36390429	36414391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
ES_00061542	chrX	+	1232	1	FSM	ENSMUSG00000036537.7	ENSMUST00000046433.7	1223	1	-9	0	-9	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	21	True	AATAAA	-21	NA	36454888	36456120	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36454900_36456100
ES_00061543	chrX	+	809	4	FSM	ENSMUSG00000051827.12	ENSMUST00000063340.12	795	4	-14	0	-14	0	multi-exon	FALSE	canonical	3	47	junction_3	56.8174464598878	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36508614	36513339	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36513113
ES_00061545	chrX	+	945	4	NIC	ENSMUSG00000051827.12	novel	735	5	NA	NA	43	4	intron_retention	FALSE	canonical	1	4	junction_2	19.6129209111409	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36508693	36513343	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_36509314_36510828_36510875_36511141_36511191_36513113
ES_00061546	chrX	+	811	4	FSM	ENSMUSG00000079638.9	ENSMUST00000115191.7	799	4	-14	2	-14	-2	multi-exon	FALSE	canonical	3	16	junction_3	23.6126143312331	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36593705	36598457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36593831_36593992_36594405_36595944_36595991_36598229
ES_00061547	chrX	+	847	3	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	26	-5	intron_retention	FALSE	canonical	1	3	junction_2	25	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATATATTTGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	36593745	36598454	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_36594405_36595944_36595991_36598312
ES_00061548	chrX	+	929	3	NIC	ENSMUSG00000079638.9	novel	799	4	NA	NA	30	-2	intron_retention	FALSE	canonical	3	16	junction_2	18.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36593749	36598457	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_36594405_36595944_36595991_36598229
ES_00061549	chrX	+	728	4	FSM	ENSMUSG00000071771.5	ENSMUST00000096458.5	887	4	83	76	-16	-76	multi-exon	FALSE	canonical	1	2	junction_1	7.87400787401181	3443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCACCAGCATGTTATTG	9383	False	NA	NA	False	NA	NA	NA	36614229	36618856	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36614345_36614534_36614941_36617340_36617387_36618695
ES_00061551	chrX	+	762	4	FSM	ENSMUSG00000079637.11	ENSMUST00000115190.11	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	17.9133717900592	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36635332	36640032	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36639802
ES_00061552	chrX	+	479	2	FSM	ENSMUSG00000079635.3	ENSMUST00000173214.2	1851	2	0	1372	0	-1372	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACTTCATCCGTGCAGA	NA	False	NA	NA	False	NA	NA	NA	36662105	36662777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36662205_36662397
ES_00061554	chrX	+	778	4	FSM	ENSMUSG00000095698.3	ENSMUST00000115179.4	685	4	0	-93	0	93	multi-exon	FALSE	canonical	3	16	junction_2	8.9938250421547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	6889	False	NA	NA	False	AATAAA	-18	NA	36675080	36679369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36675169_36675331_36675744_36677299_36677346_36679137
ES_00061555	chrX	+	811	4	FSM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	-14	2	-14	-2	multi-exon	FALSE	canonical	3	15	junction_3	24.1246761636296	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36712090	36723464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36723236
ES_00061556	chrX	+	796	4	FSM	ENSMUSG00000095741.4	ENSMUST00000115173.5	799	4	3	0	3	0	multi-exon	FALSE	canonical	2	4	junction_3	1.69967317119759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	9349	False	NA	NA	False	AATAAA	-16	NA	36753060	36757816	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36753169_36753330_36753743_36755287_36755334_36757586
ES_00061557	chrX	+	913	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	-20	0	-20	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8485	False	NA	17	True	ATTAAA	-14	NA	36891615	36897308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ES_00061558	chrX	+	1085	6	FSM	ENSMUSG00000095180.11	ENSMUST00000179626.3	957	6	-125	-3	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.13919091151	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36891896_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ES_00061559	chrX	+	1083	6	FSM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	-215	0	-215	0	multi-exon	FALSE	canonical	3	15	junction_1	1588.16578479704	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8977	False	NA	20	True	ATTAAA	-17	NA	36892107	36897311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36892366_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ES_00061561	chrX	+	1010	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915786	36918734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ES_00061562	chrX	+	876	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	2	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTAATTTTATGTGC	NA	False	NA	2	True	AATAAA	-15	NA	37210095	37218844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_37210700_37211950_37211997_37218618
ES_00061563	chrX	+	5181	2	FSM	ENSMUSG00000048047.4	ENSMUST00000049740.3	5122	2	-59	0	-59	0	multi-exon	FALSE	canonical	2	5	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGAGTGATTTTTTTTG	NA	False	NA	5	True	AATAAA	-16	NA	37278610	37285923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_37278960_37281091
ES_00061564	chrX	+	783	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ES_00061565	chrX	+	687	4	FSM	ENSMUSG00000000355.14	ENSMUST00000134573.2	764	4	0	77	0	-77	multi-exon	FALSE	canonical	3	30	junction_1	255.712077670701	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGAAGGGAACTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	37690175	37695152	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_37690275_37690805_37690959_37691452_37691551_37694815
ES_00061566	chrX	+	541	3	FSM	ENSMUSG00000000355.14	ENSMUST00000133128.8	431	3	-12	-98	-12	98	multi-exon	FALSE	canonical	3	7	junction_1	314.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37697587	37702401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_37697746_37700631_37700711_37702097
ES_00061568	chrX	+	6481	8	FSM	ENSMUSG00000025860.16	ENSMUST00000115094.8	6542	8	61	0	16	0	multi-exon	FALSE	canonical	3	44	junction_1	28.7345344383332	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41156773	41198533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_41156934_41157233_41157360_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ES_00061569	chrX	+	6448	8	NIC	ENSMUSG00000025860.16	novel	6542	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	38.1292110421115	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41156801	41198533	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_41156934_41157233_41157360_41183248_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ES_00061570	chrX	+	6670	7	FSM	ENSMUSG00000025860.16	ENSMUST00000115095.9	6670	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	35.08283847632	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41157274	41198533	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_41157750_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ES_00061573	chrX	+	5955	33	FSM	ENSMUSG00000025862.15	ENSMUST00000115072.8	5955	33	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	32.1178858854377	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTTGTATGCTTTATC	NA	False	NA	9	True	AATAAA	-12	NA	41238288	41366052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
ES_00061574	chrX	+	5844	33	FSM	ENSMUSG00000025862.15	ENSMUST00000069619.14	5825	33	-19	0	-19	0	multi-exon	FALSE	canonical	3	102	junction_1	27.0432957264827	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTATCTCTTGTAATC	NA	False	NA	19	True	AATAAA	-22	NA	41239558	41366062	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
ES_00061575	chrX	+	5958	34	NIC	ENSMUSG00000025862.15	novel	5825	33	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_30	34.473955780863	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTTGTATGCTTTATC	NA	False	NA	9	True	AATAAA	-12	NA	41239545	41366052	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
ES_00061577	chrX	+	5226	24	FSM	ENSMUSG00000001173.16	ENSMUST00000001202.15	5253	24	27	0	-24	0	multi-exon	TRUE	non_canonical	0	0	junction_1	28.8803018275155	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001290	47054745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47045086_47045111_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ES_00061578	chrX	+	5047	23	NNC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.9866860380401	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTCGGTCACTACGCAAA	NA	False	NA	-88	True	NA	NA	NA	47001343	47054640	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_47001569_47001842_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ES_00061579	chrX	+	5139	23	NNC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.330582054932	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001350	47054745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_47001569_47001845_47001926_47005351_47005432_47009040_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ES_00061580	chrX	+	5149	23	NIC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	25.9866860380401	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001343	47054745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ES_00061583	chrX	+	2684	8	FSM	ENSMUSG00000031101.7	ENSMUST00000033427.7	2677	8	-7	0	-7	0	multi-exon	FALSE	canonical	1	3	junction_3	1.30930734141595	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCGTCGCCTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	47235305	47250442	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47235595_47243402_47243499_47243852_47244000_47246295_47246438_47247609_47247759_47247918_47248129_47248280_47248432_47248942
ES_00061584	chrX	+	2524	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-17	0	-17	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345721	47371330	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
ES_00061586	chrX	+	7526	15	FSM	ENSMUSG00000036959.16	ENSMUST00000136348.8	7446	15	-80	0	-80	0	multi-exon	FALSE	canonical	3	3	junction_1	8.42372742160318	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAACCCGTGTCAGGGCC	NA	False	NA	3	True	AAAACA	-11	NA	47430154	47496926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47430361_47431677_47431758_47450409_47450540_47456295_47456387_47456645_47459910_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
ES_00061587	chrX	+	1460	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	-301	-1	-301	1	multi-exon	FALSE	canonical	3	18	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACGTGGCTTTGTGTCTTG	NA	False	NA	7	True	AATAAA	-15	NA	47607860	47619110	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47608736_47618525
ES_00061589	chrX	+	1519	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712294	47751171	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ES_00061590	chrX	+	1779	11	FSM	ENSMUSG00000031105.17	ENSMUST00000033431.14	1760	11	-19	0	-19	0	multi-exon	FALSE	canonical	1	2	junction_2	43.9708994677161	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712435	47751171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47712706_47712838_47713075_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ES_00061592	chrX	+	1598	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	-16	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712625	47751171	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ES_00061594	chrX	+	682	1	FSM	ENSMUSG00000082192.3	ENSMUST00000121891.3	340	1	-125	-217	-125	217	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-29	NA	48749711	48750393	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_48749700_48750400
ES_00061597	chrX	+	1503	2	NNC	ENSMUSG00000073207.2	novel	1536	2	NA	NA	1875	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAAAATATGCCTGTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	51881951	51888343	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_51882047_51886935
ES_00061598	chrX	+	882	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987464	51988346	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_51987500_51988300
ES_00061602	chrX	+	958	2	Genic_Genomic	ENSMUSG00000051851.6	novel	401	1	NA	NA	-115	703	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCTTACTTAGTATAG	NA	False	NA	NA	False	AATAAA	-25	NA	52609883	52611102	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_52610392_52610652
ES_00061603	chrX	+	1578	5	NNC	ENSMUSG00000055555.2	novel	1427	5	NA	NA	-54	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	63.2890195847589	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATACTGTTTACCTGTAGT	NA	False	NA	NA	False	AATAAA	-17	NA	52726738	52740407	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_52727016_52729333_52729614_52735693_52735827_52738241_52738355_52739632
ES_00061604	chrX	+	1502	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	-75	0	-75	0	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTTACCTGTAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	52726717	52740408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
ES_00061606	chrX	+	1022	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181931	55198858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ES_00061607	chrX	+	3753	5	FSM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	-15	0	-15	0	multi-exon	FALSE	canonical	3	23	junction_1	8.6421930087218	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTCTGATTCTTTTA	NA	False	NA	6	True	AATAAA	-16	NA	55391744	55411034	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_55391800_55393642_55394089_55398822_55399028_55407826_55407941_55408101
ES_00061608	chrX	+	2407	2	FSM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	-14	0	-14	0	multi-exon	FALSE	canonical	3	59	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATCCTGGCTGCCTCCTG	NA	False	NA	14	True	AAGAAA	-15	NA	55419931	55423159	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_55420569_55421389
ES_00061609	chrX	+	970	3	NNC	ENSMUSG00000054850.5	novel	2393	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	27	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATCCTGGCTGCCTCCTG	NA	False	NA	14	True	AAGAAA	-15	NA	55419945	55423159	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_55420569_55421389_55421551_55422973
ES_00061610	chrX	+	296	1	FSM	ENSMUSG00000058932.7	ENSMUST00000079663.7	402	1	97	9	97	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTTAAGCGGCCAACAC	NA	False	NA	NA	False	NA	NA	NA	55493421	55493717	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_55493400_55493700
ES_00061612	chrX	+	4049	17	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	-20	0	intron_retention	FALSE	canonical	3	44	junction_9	15.57040461902	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTAGGTGTATGTC	NA	False	NA	15	True	AATAAA	-26	NA	55500196	55553199	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ES_00061613	chrX	+	3836	17	FSM	ENSMUSG00000035967.16	ENSMUST00000039374.9	3766	17	-66	-4	-46	0	multi-exon	FALSE	canonical	3	20	junction_10	18.8414436814168	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGGTGTATGTCTCTT	NA	False	NA	19	True	AATAAA	-30	NA	55500170	55553203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ES_00061617	chrX	+	4913	16	FSM	ENSMUSG00000060681.16	ENSMUST00000077741.12	4976	16	63	0	21	0	multi-exon	TRUE	canonical	0	0	junction_7	32.6612240363945	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCTCTTTGTACATGAG	NA	False	NA	NA	False	ATTAAA	-19	NA	55655197	55709590	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
ES_00061619	chrX	+	1128	6	FSM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_5	193.065170344109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACTGGCTCACTTAT	NA	False	NA	25	True	NA	NA	NA	56098942	56102566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
ES_00061620	chrX	+	2842	10	FSM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	-32	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	40.9980427114861	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56098942	56112543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ES_00061622	chrX	+	1003	5	ISM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	315	-2	0	2	3prime_fragment	FALSE	canonical	3	35	junction_4	215.852380111964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGGCTCACTTATGT	NA	False	NA	27	True	NA	NA	NA	56099257	56102568	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
ES_00061623	chrX	+	2715	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	283	0	0	0	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56099257	56112543	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ES_00061626	chrX	+	1950	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	0	1	0	-1	multi-exon	FALSE	canonical	3	14	junction_2	99.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGATTATTGTTTTA	9867	False	NA	NA	False	NA	NA	NA	57076369	57087095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_57077598_57078721_57078886_57086537
ES_00061632	chrX	+	2180	3	Genic_Genomic	ENSMUSG00000083576.2	novel	1100	1	NA	NA	-57528	412	multi-exon	FALSE	canonical	2	4	junction_1	13	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGCAAAGTTTATGCTC	NA	False	NA	NA	False	ATTAAA	-20	NA	61241125	61300165	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_61241264_61249243_61249365_61298244
ES_00061635	chrX	+	706	1	FSM	ENSMUSG00000084459.3	ENSMUST00000122510.3	74	1	18	-650	18	650	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTCCCACCTTCTTCG	NA	False	NA	NA	False	AATATA	-24	NA	63540207	63540913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_63540200_63540900
ES_00061636	chrX	+	1673	9	NNC	ENSMUSG00000079577.2	novel	782	8	NA	NA	-878	716	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	9.9365172470036	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTGAAATTATCAAATTA	NA	False	NA	NA	False	ATTAAA	-18	NA	66738425	66750672	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_66738557_66739259_66739413_66739880_66739951_66740099_66740135_66741912_66742031_66742916_66743017_66743790_66743890_66749598_66749704_66749810
ES_00061640	chrX	+	3028	7	Fusion	ENSMUSG00000000838.18_ENSMUSG00002075986.1	novel	4058	17	NA	NA	0	-62	multi-exon	FALSE	canonical	3	49	junction_4	307.710587330946	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTTATCTTATCTAGA	NA	False	NA	36	True	ATTAAA	-17	NA	67722187	67761507	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738687_67755911_67756020_67756846_67756930_67759170
ES_00061641	chrX	+	4332	17	NNC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_14	180.447880286802	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722187	67761569	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
ES_00061642	chrX	+	4076	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114657.9	4076	16	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_11	161.476190195335	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722416	67761569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
ES_00061643	chrX	+	4064	17	FSM	ENSMUSG00000000838.18	ENSMUST00000114653.2	4058	17	-6	0	0	0	multi-exon	FALSE	canonical	3	204	junction_14	173.862182759075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722416	67761569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
ES_00061646	chrX	+	811	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	-13	1	-13	-1	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGATTCTTTTTGTTAA	NA	False	NA	26	True	ATTAAA	-26	NA	67805431	67848172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
ES_00061647	chrX	+	679	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805486	67848173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
ES_00061648	chrX	+	842	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805539	67848173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
ES_00061650	chrX	+	3781	2	Genic_Genomic	ENSMUSG00000071748.3	novel	4226	1	NA	NA	0	9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATACAGGAAGACAC	NA	False	NA	NA	False	ATTAAA	-26	NA	67864698	67868933	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_67865095_67865548
ES_00061651	chrX	+	1102	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429474	69433023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_69429758_69431499_69431773_69432477
ES_00061652	chrX	+	1746	1	FSM	ENSMUSG00000082336.2	ENSMUST00000120248.2	1739	1	-7	0	-7	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2736	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGGTTCTGCATAGACT	NA	False	NA	NA	False	AAAAAG	-25	NA	69561375	69563121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_69561400_69563100
ES_00061653	chrX	+	999	1	FSM	ENSMUSG00000082262.2	ENSMUST00000122378.2	1045	1	29	17	29	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGCAGAAGGTTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	70240761	70241760	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70240800_70241800
ES_00061654	chrX	+	3394	15	FSM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	290	junction_14	28.3207755284104	3486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAGGGCTATGACTGT	NA	False	NA	16	True	AATAAA	-24	NA	70258596	70358901	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ES_00061655	chrX	+	3357	15	NIC	ENSMUSG00000031337.17	novel	3338	15	NA	NA	4	3	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	80.3753947525774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTTCCAGGGCTATGA	NA	False	NA	12	True	AATAAA	-44	NA	70258694	70358897	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ES_00061657	chrX	+	4487	14	NIC	ENSMUSG00000015214.15	novel	4634	15	NA	NA	-8	-5	combination_of_known_splicesites	FALSE	canonical	3	18	junction_7	19.0688568554895	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTCTCTGTTGTCTCTG	NA	False	NA	6	True	ACTAAA	-19	NA	70408357	70462797	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_70408679_70413404_70413511_70426805_70426882_70431828_70431924_70432258_70432367_70435295_70435398_70436121_70436206_70437882_70438072_70444146_70444333_70445333_70445541_70448477_70448571_70454338_70454453_70455810_70455988_70460168
ES_00061658	chrX	+	1571	5	FSM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_1	126.240593708997	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599523	70604282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ES_00061659	chrX	+	1753	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	-10	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599523	70604282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ES_00061660	chrX	+	1728	5	FSM	ENSMUSG00000015217.12	ENSMUST00000088874.10	1728	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	352.060630431748	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599595	70604282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70599844_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ES_00061670	chrX	+	2866	5	FSM	ENSMUSG00000067771.10	ENSMUST00000088459.9	2864	5	-4	2	-4	0	multi-exon	FALSE	canonical	3	20	junction_1	16.161296358894	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72160648	72172866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72160742_72166673_72166742_72167034_72167132_72168423_72168590_72170424
ES_00061671	chrX	+	1183	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	-293	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_1	175.455093388361	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTAGTTGTGGGGCTGT	NA	False	NA	NA	False	NA	NA	NA	72192401	72202185	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ES_00061675	chrX	+	2388	8	FSM	ENSMUSG00000073125.11	ENSMUST00000138149.2	2384	8	-4	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	448.163508791429	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235812	72246535	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72235856_72237775_72237898_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
ES_00061676	chrX	+	3780	7	FSM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_3	266.969203384127	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72241992_72243351_72243451_72245455_72245552_72245645
ES_00061677	chrX	+	1223	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	-26	3	-10	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72257928	72266056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ES_00061678	chrX	+	1179	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	78.4071903590481	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257951	72266059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_72258064_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ES_00061682	chrX	+	6304	5	FSM	ENSMUSG00000031365.14	ENSMUST00000114499.8	6284	5	-20	0	-20	0	multi-exon	FALSE	canonical	3	19	junction_2	9.63068014212911	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCTTTCTTGACTCATT	NA	False	NA	12	True	NA	NA	NA	72386206	72402686	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72386358_72388442_72388519_72395414_72395530_72396441_72396544_72396826
ES_00061683	chrX	+	5856	6	NNC	ENSMUSG00000031365.14	novel	6376	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	11.6206712370672	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCTTTCTTGACTCATT	NA	False	NA	12	True	NA	NA	NA	72386198	72402686	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_72386358_72388442_72388519_72395414_72395530_72396441_72396544_72396826_72396928_72397383
ES_00061684	chrX	+	6692	4	ISM	ENSMUSG00000031365.14	ENSMUST00000114499.8	6284	5	1677	0	-170	0	3prime_fragment	FALSE	canonical	3	19	junction_1	11.115554667022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCTTTCTTGACTCATT	NA	False	NA	12	True	NA	NA	NA	72387903	72402686	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_72388519_72395414_72395530_72396441_72396544_72396826
ES_00061688	chrX	+	843	5	FSM	ENSMUSG00000019558.15	ENSMUST00000168764.8	843	5	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	34.0073521462639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCTGCTGCTCGGTCTG	NA	False	NA	NA	False	NA	NA	NA	72720664	72723374	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290
ES_00061689	chrX	+	1613	9	FSM	ENSMUSG00000019558.15	ENSMUST00000170614.8	1613	9	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_5	43.9813525826571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCACCCCCAGCTCACAT	NA	False	NA	NA	False	NA	NA	NA	72721759	72724706	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
ES_00061695	chrX	+	2132	5	FSM	ENSMUSG00000002014.13	ENSMUST00000130738.8	2119	5	0	-13	0	0	multi-exon	FALSE	canonical	3	1319	junction_4	120.079921302439	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACGGGGCTCCTGTGT	5628	False	NA	46	True	AATAAA	-28	NA	72830829	72834430	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ES_00061697	chrX	+	206	1	FSM	ENSMUSG00000080829.2	ENSMUST00000120692.2	801	1	315	280	315	-280	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGGATGGTGCGAAAGA	NA	False	NA	NA	False	NA	NA	NA	73050622	73050828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73050600_73050800
ES_00061702	chrX	+	1436	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	-80	-18	-2	18	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAGAAAAGAAAATATA	NA	False	NA	NA	False	AATAAA	-31	NA	73298355	73305172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
ES_00061704	chrX	+	648	7	FSM	ENSMUSG00000008682.14	ENSMUST00000151702.8	648	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	3469.80780767786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGGTCCTCTGGACAA	NA	False	NA	-98	True	AATATA	-6	NA	73314462	73316631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ES_00061705	chrX	+	858	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	-3	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	1291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314462	73316741	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ES_00061708	chrX	+	930	4	FSM	ENSMUSG00000008682.14	ENSMUST00000134330.2	930	4	0	0	0	0	multi-exon	FALSE	canonical	3	9221	junction_2	231.174296918052	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGAGAGCCCTGCATTCC	NA	False	NA	-79	True	AATATA	-25	NA	73315014	73316650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73315325_73315405_73315514_73315784_73315924_73316277
ES_00061712	chrX	+	1742	9	FSM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	66.075241202738	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326355	73333754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
ES_00061713	chrX	+	1798	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	-12	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	91.4165611600053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326355	73333754	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
ES_00061715	chrX	+	2189	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	-3	3	-3	-3	multi-exon	FALSE	canonical	3	647	junction_4	26.5934179176579	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACAGTAGATTTTTTT	NA	False	NA	43	True	AATAAA	-43	NA	73340699	73348324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ES_00061716	chrX	+	2226	10	FSM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	-69	0	-3	0	multi-exon	TRUE	canonical	0	0	junction_9	217.728565868289	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	NA	False	NA	14	True	AATAAA	-19	NA	73340699	73348295	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347336
ES_00061720	chrX	+	3708	9	FSM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	-14	2	0	0	multi-exon	FALSE	canonical	3	736	junction_5	44.1572120383522	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCCTGGCTCTTTAGGT	5948	False	NA	11	True	AATAAA	-12	NA	73348603	73355464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995_73354141_73354243_73354299_73354392
ES_00061729	chrX	+	3333	10	FSM	ENSMUSG00000004221.17	ENSMUST00000114127.8	3332	10	-1	0	-1	0	multi-exon	FALSE	canonical	3	103	junction_7	10.8217887204986	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGGGGTTTGGGCTTA	NA	False	NA	3	True	NA	NA	NA	73473275	73493892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480769_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
ES_00061730	chrX	+	4546	10	FSM	ENSMUSG00000004221.17	ENSMUST00000064407.10	4530	10	-16	0	-16	0	multi-exon	FALSE	canonical	3	18	junction_3	31.82591536608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATGCACTCTGTCCTCC	NA	False	NA	1	True	AATAAA	-15	NA	73473293	73495126	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480772_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
ES_00061742	chrX	+	602	6	FSM	ENSMUSG00000031403.15	ENSMUST00000131867.8	541	6	-211	150	36	0	multi-exon	FALSE	canonical	3	105	junction_1	826.736814228083	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTTCCCATGAGGTGGTA	NA	False	NA	NA	False	NA	NA	NA	74139495	74142403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368
ES_00061746	chrX	+	1693	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1810	0	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147744	74153383	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ES_00061752	chrX	+	1056	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	1690	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_10	388.218752767045	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCAAGTTGGTTTTTGGT	NA	False	NA	4	True	NA	NA	NA	74460305	74499297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499161
ES_00061754	chrX	+	4926	12	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	1702	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_11	449.962110434252	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGGTCATGGTATTTTA	NA	False	NA	16	True	NA	NA	NA	74460305	74499309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493749_74494289_74498147_74499157
ES_00061755	chrX	+	4972	12	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	29	1702	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_11	419.990436727015	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGGTCATGGTATTTTA	NA	False	NA	16	True	NA	NA	NA	74460262	74499309	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289_74498147_74499157
ES_00061756	chrX	+	4210	10	NIC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	19	junction_1	436.359801704064	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTTTATGACTTTGG	NA	False	NA	NA	False	NA	NA	NA	74460316	74497607	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_74460448_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ES_00061759	chrX	+	652	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	-20	0	-20	0	multi-exon	FALSE	canonical	3	80	junction_4	774.241685457455	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	74557884	74567652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
ES_00061762	chrX	+	659	1	FSM	ENSMUSG00000081622.2	ENSMUST00000119715.2	643	1	-53	37	-53	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGACAAAGATGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	76500138	76500797	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_76500100_76500800
ES_00061763	chrX	+	5489	17	NIC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	-189	0	combination_of_known_junctions	TRUE	canonical	3	50	junction_1	145.192921228964	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACATAGTGACTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	76554429	76706589	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_76554876_76628399_76628466_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
ES_00061764	chrX	+	5234	16	FSM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	40.4669412401448	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACATAGTGACTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	76554618	76706589	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
ES_00061770	chrX	+	4534	18	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-19	2	at_least_one_novel_splicesite	TRUE	non_canonical	3	70	junction_17	69.577916792545	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGGTTGGACTGTAGT	NA	False	NA	21	True	AATAAA	-27	NA	84091881	84248656	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076_84246547_84246566
ES_00061771	chrX	+	4550	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-18	-1	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTATTGGTTGGACTGT	NA	False	NA	18	True	AATAAA	-24	NA	84091882	84248653	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
ES_00061775	chrX	+	6364	9	FSM	ENSMUSG00000035476.10	ENSMUST00000048250.10	6364	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	26.186828750347	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTGCATCTTTTCTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	84617627	84678075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_84617772_84619155_84619217_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ES_00061787	chrX	+	6604	5	Fusion	ENSMUSG00000099072.3_ENSMUSG00000043929.17	novel	1227	5	NA	NA	-71	2	multi-exon	FALSE	canonical	3	16	junction_4	17.9652442232217	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTTAACTGATTATTT	NA	False	NA	NA	False	AATAAA	-22	NA	93278461	93321332	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93315961
ES_00061788	chrX	+	1230	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	-3	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278592	93297673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
ES_00061789	chrX	+	3944	4	FSM	ENSMUSG00000043929.17	ENSMUST00000096369.10	3944	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.59966329107444	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAGTAAGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	93278592	93299574	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020
ES_00061791	chrX	+	1032	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113896.8	1032	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	148.965547610849	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410770	93460699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93410933_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ES_00061792	chrX	+	1191	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113895.2	1173	9	-18	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	144.775688566831	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410770	93460699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93411092_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ES_00061795	chrX	+	3842	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139647	95212158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
ES_00061803	chrX	+	5216	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	0	-5	0	5	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCTGCCTTTGTAGTG	NA	False	NA	NA	False	AATAAA	-21	NA	97981366	97992628	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ES_00061808	chrX	+	4974	8	FSM	ENSMUSG00000059327.10	ENSMUST00000113779.8	4955	8	-20	1	-20	0	multi-exon	FALSE	canonical	1	5	junction_1	8.05339325111737	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGACATTATCTTGAG	NA	False	NA	4	True	AATAAA	-15	NA	99019191	99444365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_99019783_99353599_99353706_99425060_99425085_99433307_99433488_99434946_99434982_99435938_99435991_99438624_99438756_99440510
ES_00061814	chrX	+	3316	12	FSM	ENSMUSG00000000881.13	ENSMUST00000151020.8	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.5078126534158	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGCTCAGAGGTCTT	699	False	NA	NA	False	AATAAA	-15	NA	99820890	99862014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_99820979_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
ES_00061818	chrX	+	6868	46	NIC	ENSMUSG00000079487.12	novel	6940	46	NA	NA	16	-2	combination_of_known_junctions	TRUE	canonical	2	58	junction_41	20.6676941202185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTGGGTTTTGTATAT	NA	False	NA	44	True	AATGAA	-32	NA	100317651	100340991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ES_00061819	chrX	+	6809	45	FSM	ENSMUSG00000079487.12	ENSMUST00000087948.11	6809	45	0	0	0	0	multi-exon	FALSE	canonical	2	86	junction_14	18.8047135597997	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100317865	100341071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ES_00061828	chrX	+	8907	39	NNC	ENSMUSG00000031314.19	novel	7331	39	NA	NA	-6799	0	intron_retention	FALSE	canonical	3	140	junction_1	53.245290325326	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAGAGTGATTTTAAGTAG	NA	False	NA	NA	False	AATAAA	-24	NA	100569540	100644640	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_100571293_100576457_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
ES_00061834	chrX	+	1469	5	FSM	ENSMUSG00000034160.14	ENSMUST00000155713.8	1317	5	-152	0	-150	0	multi-exon	FALSE	canonical	3	98	junction_1	106.6123233965	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	100683515	100696483	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745
ES_00061835	chrX	+	3848	23	FSM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	-8	0	-8	0	multi-exon	FALSE	canonical	3	98	junction_1	138.801667470395	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTAAGACTTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	100683657	100726546	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ES_00061836	chrX	+	5404	22	FSM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	-20	0	-16	0	multi-exon	FALSE	canonical	3	202	junction_4	118.587682955494	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683649	100727957	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ES_00061839	chrX	+	5324	22	NIC	ENSMUSG00000034160.14	novel	5384	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	162	junction_1	123.579218031398	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683699	100727957	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ES_00061842	chrX	+	2048	7	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-48	0	intron_retention	FALSE	canonical	3	47	junction_5	86.9329243344162	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838213	100842244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
ES_00061844	chrX	+	1991	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838261	100842244	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ES_00061845	chrX	+	2218	6	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-44	-2	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACAGCTGTACTTTTGC	NA	False	NA	NA	False	NA	NA	NA	100838217	100842242	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ES_00061846	chrX	+	489	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
ES_00061849	chrX	+	1366	8	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	51	-4	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	52.0670682085782	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAGACACTGCCCAGGTC	NA	False	NA	NA	False	AATAAA	-8	NA	101846619	101853544	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_101846761_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ES_00061850	chrX	+	1362	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	81	-6	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGGAGACACTGCCCAGG	NA	False	NA	NA	False	AATAAA	-6	NA	101846649	101853542	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ES_00061854	chrX	+	7374	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	0	1	0	-1	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTTGAACCGTGTGGCT	NA	False	NA	7	True	AATAAA	-17	NA	102400081	102439697	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
ES_00061856	chrX	+	2281	2	NIC	ENSMUSG00000085715.3	novel	4306	4	NA	NA	82	981	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATGACGCGTGAATTTC	NA	False	NA	NA	False	AATAAA	-22	NA	102491409	102526993	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_102491578_102524880
ES_00061857	chrX	+	1577	1	FSM	ENSMUSG00000083502.2	ENSMUST00000119451.2	455	1	-1037	-85	-1037	85	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCAATTATACCCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102529502	102531079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_102529500_102531100
ES_00061865	chrX	+	1244	6	FSM	ENSMUSG00000031226.14	ENSMUST00000119477.2	1239	6	-5	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	564.946723151838	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123361	104160696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104159919
ES_00061868	chrX	+	1004	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	-3	0	-3	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGGGTTTAAAGTGATAA	NA	False	NA	NA	False	AATAAA	-14	NA	105059302	105066056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_105059477_105063184_105063310_105065351
ES_00061869	chrX	+	1018	2	FSM	ENSMUSG00000031231.5	ENSMUST00000155377.2	526	2	0	-492	0	0	multi-exon	FALSE	canonical	3	9427	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGGGTTTAAAGTGATAA	NA	False	NA	NA	False	AATAAA	-14	NA	105062996	105066056	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_105063310_105065351
ES_00061871	chrX	+	7944	23	FSM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	-111	-2967	-65	2967	multi-exon	TRUE	canonical	2	29	junction_4	14.4839609212032	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTAAGTCATCCAGCC	NA	False	NA	NA	False	TTTAAA	-23	NA	105070816	105171499	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131940_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
ES_00061882	chrX	+	218	1	FSM	ENSMUSG00000083971.4	ENSMUST00000119458.2	459	1	159	82	159	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGCAATGGAAGACCAATG	NA	False	NA	NA	False	AGTAAA	-10	NA	113899005	113899223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_113899000_113899200
ES_00061886	chrX	+	4480	23	FSM	ENSMUSG00000034480.19	ENSMUST00000127577.8	4480	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	24.1433391734922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAGAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	128650490	129081220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_128650866_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684
ES_00061889	chrX	+	8503	27	FSM	ENSMUSG00000034480.19	ENSMUST00000037854.15	3742	27	-124	-4637	-61	0	multi-exon	FALSE	canonical	2	27	junction_4	22.6520176877347	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTCTCTGATTCCGA	NA	False	NA	NA	False	AATAAA	-19	NA	128650429	129366583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079810_129159825_129159991_129190602_129190739_129228714_129228811_129361619
ES_00061890	chrX	+	8196	27	FSM	ENSMUSG00000034480.19	ENSMUST00000113320.3	8196	27	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	24.898729798167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTCTCTGATTCCGA	NA	False	NA	NA	False	AATAAA	-19	NA	128650724	129366583	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_128650866_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079810_129159825_129159991_129190602_129190739_129228714_129228811_129361619
ES_00061892	chrX	+	4530	14	FSM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	-96	-773	-96	0	multi-exon	FALSE	canonical	3	157	junction_8	147.051615138335	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCCTACTTAGAAATCTT	NA	False	NA	12	True	AATAAA	-12	NA	132959839	132987568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ES_00061893	chrX	+	4512	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	-10	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCCTACTTAGAAATCTT	NA	False	NA	12	True	AATAAA	-12	NA	132959935	132987568	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ES_00061894	chrX	+	2717	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132959963	132976612	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
ES_00061897	chrX	+	3109	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	-24	0	-24	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208879	133263385	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ES_00061898	chrX	+	398	4	FSM	ENSMUSG00000031262.13	ENSMUST00000129782.2	398	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	125.592816496628	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGACAAATCAGGCAACT	NA	False	NA	NA	False	NA	NA	NA	133208947	133210999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133209047_133209314_133209383_133209475_133209597_133210889
ES_00061899	chrX	+	3517	16	ISM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	15382	0	11539	0	3prime_fragment	FALSE	canonical	3	156	junction_2	15.0811140172071	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133224285	133263385	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ES_00061902	chrX	+	812	4	FSM	ENSMUSG00000079435.10	ENSMUST00000172023.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_3	1438.31622237794	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486437	133488811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133486933_133487259_133487328_133488199_133488323_133488685
ES_00061903	chrX	+	553	2	FSM	ENSMUSG00000079435.10	ENSMUST00000152266.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTTTGATTGCAGTTG	NA	False	NA	15	True	AATAAA	-14	NA	133487829	133488745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133488323_133488685
ES_00061907	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133502034	133507803	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
ES_00061910	chrX	+	2249	5	NNC	ENSMUSG00000033460.15	novel	2228	5	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618649	133622657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
ES_00061911	chrX	+	2094	4	NNC	ENSMUSG00000033460.15	novel	2228	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618711	133622657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
ES_00061912	chrX	+	2228	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113201.8	2228	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	55.9955355363265	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618711	133622657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620782
ES_00061913	chrX	+	2354	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	-110	9	-103	0	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618608	133622657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
ES_00061914	chrX	+	2304	6	FSM	ENSMUSG00000033460.15	ENSMUST00000035748.14	2303	6	-1	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61.3286230075321	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620782
ES_00061915	chrX	+	2186	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113197.2	2179	5	-7	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	75.7310207246674	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618761	133622666	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620782
ES_00061919	chrX	+	3815	6	Fusion	ENSMUSG00000067360.13_ENSMUSG00000094004.8	novel	3698	5	NA	NA	22	7	multi-exon	FALSE	canonical	3	44	junction_2	62.3621680187596	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134203086	134284149	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134203188_134203385_134203505_134208081_134208382_134209685_134210271_134210847_134211722_134282313
ES_00061920	chrX	+	3813	7	Fusion	ENSMUSG00000096508.8_ENSMUSG00000067360.13_ENSMUSG00000094004.8	novel	3698	5	NA	NA	22	174	multi-exon	FALSE	canonical	0	0	junction_5	78.3682546273256	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134203086	134344753	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134203188_134203385_134203513_134208081_134208382_134209685_134210271_134210847_134211481_134282071_134283300_134343914
ES_00061924	chrX	+	3681	5	FSM	ENSMUSG00000096508.8	ENSMUST00000113172.8	3677	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	153	junction_2	40.2336923485777	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTACTAAAATTTAAGT	NA	False	NA	NA	False	NA	NA	NA	134334579	134344579	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134334711_134334908_134335036_134339279_134339580_134340880_134341466_134342041
ES_00061925	chrX	+	3843	6	Fusion	ENSMUSG00000054994.3_ENSMUSG00000096508.8	novel	3677	5	NA	NA	22	163	multi-exon	TRUE	canonical	3	118	junction_5	43.5908247226409	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTCTTCGTGAATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	134334605	134405506	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134334711_134334908_134335036_134339279_134339580_134340880_134341466_134342041_134342638_134403376
ES_00061926	chrX	+	3829	5	Fusion	ENSMUSG00000054994.3_ENSMUSG00000096508.8	novel	3677	5	NA	NA	35	163	multi-exon	FALSE	canonical	3	70	junction_2	76.9492527579053	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTCTTCGTGAATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	134334618	134405506	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134334711_134334908_134335036_134400016_134400317_134401619_134402205_134402781
ES_00061928	chrX	+	3697	5	FSM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	1	0	1	0	multi-exon	FALSE	canonical	3	112	junction_2	53.6516542149448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134395337	134405343	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134395469_134395666_134395786_134400016_134400317_134401619_134402205_134402781
ES_00061929	chrX	+	3960	5	NNC	ENSMUSG00000054994.3	novel	3698	5	NA	NA	1	163	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	85.0628444151734	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTCTTCGTGAATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	134395337	134405506	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_134395569_134395666_134395786_134400016_134400317_134401619_134402205_134402781
ES_00061935	chrX	+	2779	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643481	134648071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
ES_00061937	chrX	+	5640	10	FSM	ENSMUSG00000043384.16	ENSMUST00000113145.8	5640	10	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	56.9550396647204	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCCTTCACTGTAAAAT	NA	False	NA	18	True	AATAAA	-25	NA	134643481	134704223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134643728_134644190_134644272_134645247_134645325_134649404_134649532_134652693_134652767_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ES_00061940	chrX	+	5408	7	NNC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1504	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.1326193117358	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAAATTGCCCCTTCAC	9734	False	NA	10	True	AATAAA	-17	NA	134696832	134704215	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_134697086_134697659_134697787_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ES_00061941	chrX	+	5281	6	NIC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1504	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	60.7302231183124	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAAATTGCCCCTTCAC	9734	False	NA	10	True	AATAAA	-17	NA	134696832	134704215	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_134697086_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ES_00061944	chrX	+	4374	5	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	12	0	intron_retention	FALSE	canonical	3	64	junction_1	34.3829536253068	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCCTTCTTCACTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	134739866	134745479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_134740622_134741141_134741219_134741367_134741674_134741969_134742053_134742326
ES_00061949	chrX	+	2995	5	FSM	ENSMUSG00000072964.15	ENSMUST00000068755.14	2823	5	-172	0	-170	0	multi-exon	FALSE	canonical	3	24	junction_1	79.1296404642407	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTTGTGTATATGA	NA	False	NA	10	True	AATAAA	-21	NA	134786429	134791830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134786847_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ES_00061950	chrX	+	3241	5	FSM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	-431	2	-431	-2	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTGTGTTTGTGTA	NA	False	NA	5	True	AATAAA	-16	NA	134786168	134791825	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ES_00061954	chrX	+	808	3	NNC	ENSMUSG00000047844.4	novel	837	3	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_2	2040.5	111	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	135039770	135041192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_135039916_135040271_135040349_135040606
ES_00061955	chrX	+	1033	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	-14	0	-14	0	multi-exon	FALSE	canonical	3	2732	junction_2	36	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135145813	135147888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135145977_135146449_135146516_135147084
ES_00061956	chrX	+	1016	4	NNC	ENSMUSG00000042712.11	novel	1019	3	NA	NA	26	27221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1305.17874467659	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAAACAACAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	135145853	135175109	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_135145977_135146449_135146516_135147084_135147882_135175079
ES_00061957	chrX	+	904	2	FSM	ENSMUSG00000042712.11	ENSMUST00000113115.2	888	2	0	-16	0	16	multi-exon	FALSE	canonical	3	2732	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTTTAAAACTCCTGA	NA	False	NA	24	True	AATAAA	-40	NA	135146431	135147904	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135146516_135147084
ES_00061958	chrX	+	938	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	-8	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_2	392	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171001	135172727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135171151_135171558_135171632_135172011
ES_00061959	chrX	+	933	3	FSM	ENSMUSG00000046432.13	ENSMUST00000178632.8	933	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_2	2417.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171001	135172727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135171151_135171558_135171632_135172016
ES_00061960	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	2270	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	135171053	135172713	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135171151_135171558_135171632_135172057
ES_00061961	chrX	+	860	4	NNC	ENSMUSG00000046432.13	novel	930	3	NA	NA	0	2385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2229.73605812188	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAACAACAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	135171053	135175112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_135171151_135171558_135171632_135172011_135172665_135175075
ES_00061966	chrX	+	2540	7	FSM	ENSMUSG00000031425.16	ENSMUST00000113085.2	2540	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	2.35702260395516	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	135723538	135738547	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135723667_135731819_135732007_135732701_135732859_135734016_135734186_135734903_135734978_135735847_135735914_135736788
ES_00061971	chrX	+	1196	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	-18	0	-18	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234413	138238918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_138235157_138237570_138237800_138238694
ES_00061981	chrX	+	2467	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	17	0	17	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011189	141022688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
ES_00061982	chrX	+	1135	1	FSM	ENSMUSG00000083311.4	ENSMUST00000117081.2	966	1	23	-192	23	192	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTATAACAGGTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	141080583	141081718	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_141080600_141081700
ES_00061984	chrX	+	5340	7	FSM	ENSMUSG00000047045.18	ENSMUST00000087333.9	5149	7	-57	-134	-45	134	multi-exon	FALSE	canonical	3	33	junction_2	37.6592913133296	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGTCCTGGCCTTGCT	NA	False	NA	6	True	ATTAAA	-15	NA	141464356	141621368	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_141464553_141465286_141465946_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
ES_00061985	chrX	+	677	6	ISM	ENSMUSG00000047045.18	ENSMUST00000112889.8	1742	7	-9	9090	-9	-3834	5prime_fragment	FALSE	canonical	3	60	junction_1	22.0599184042009	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTGTTTTAGTTCT	NA	False	NA	NA	False	AATAGA	-18	NA	141464392	141617400	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_141464553_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
ES_00061987	chrX	+	1802	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143100799	143108193	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ES_00061988	chrX	+	479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCAAAATAAATTCAT	NA	False	NA	40	True	TTTAAA	-31	NA	143100998	143107173	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
ES_00061989	chrX	+	4083	27	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	548	junction_3	189.502244292029	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100999	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00061990	chrX	+	4015	26	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_21	266.015115360011	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100998	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00061991	chrX	+	4092	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	283.560719423548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100999	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143152506_143152858_143156543
ES_00061992	chrX	+	4123	28	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_24	332.947459779973	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100999	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143147931_143147972_143150894_143150936_143152556_143152858_143156543
ES_00061993	chrX	+	4188	27	FSM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	-20	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	235.310423828037	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100998	143157446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00061994	chrX	+	3873	25	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-72	0	combination_of_known_junctions	TRUE	canonical	3	134	junction_1	227.828696459765	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118792	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00061996	chrX	+	3950	24	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	17906	0	60	0	3prime_fragment	FALSE	canonical	3	957	junction_21	118.352985224418	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118924	143157446	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00061998	chrX	+	3899	23	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	42	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_18	237.652139178671	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118906	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00062002	chrX	+	2608	14	FSM	ENSMUSG00000041718.17	ENSMUST00000132416.8	2608	14	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_9	302.491097233167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143129730	143157446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00062005	chrX	+	282	1	Intergenic	novelGene_4492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGATTTTTTTTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	144959611	144959893	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_144959600_144959900
ES_00062015	chrX	+	2041	7	FSM	ENSMUSG00000079387.11	ENSMUST00000163338.2	2025	7	-20	4	-20	-4	multi-exon	FALSE	canonical	1	5	junction_3	4.85626742811116	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTTCTTTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	147665551	147707131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_147665664_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
ES_00062016	chrX	+	2048	7	FSM	ENSMUSG00000094885.8	ENSMUST00000177554.2	2028	7	-20	0	-20	0	multi-exon	TRUE	canonical	0	0	junction_1	5.58022301426107	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	147880927	147921148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_147881040_147898081_147898208_147898926_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
ES_00062026	chrX	+	1906	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	10.2058806577385	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371239	149426874	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ES_00062027	chrX	+	2049	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	17.6227126175286	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371253	149426874	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ES_00062028	chrX	+	1947	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	17.7330827049958	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371269	149426874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ES_00062032	chrX	+	10359	22	FSM	ENSMUSG00000041245.14	ENSMUST00000184730.8	5253	22	0	-5106	0	140	multi-exon	TRUE	canonical	3	19	junction_5	4.73707813921748	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTCAGCCGTGTCTTCC	NA	False	NA	NA	False	AAGAAA	-42	NA	149981073	150103288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_149981670_149990593_149990767_149992270_149992492_149993868_149994027_150009451_150009541_150013228_150013449_150015940_150016236_150019529_150019631_150019888_150020033_150049263_150049329_150057913_150058062_150059848_150059966_150067265_150067422_150067500_150067553_150068774_150068913_150069255_150070203_150076805_150076897_150077417_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
ES_00062036	chrX	+	5411	21	NIC	ENSMUSG00000041229.16	novel	5728	22	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	3	39	junction_12	14.924727803213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAATTTTGTTGCTTGA	NA	False	NA	-1	True	GATAAA	-12	NA	150304189	150416848	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ES_00062043	chrX	+	5030	25	FSM	ENSMUSG00000025261.19	ENSMUST00000130243.8	5010	25	-20	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	19.9095175453573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAAGATTGGGGG	NA	False	NA	NA	False	AATGAA	-34	NA	150586322	150656544	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475
ES_00062044	chrX	+	14813	84	NIC	ENSMUSG00000025261.19	novel	14579	83	NA	NA	0	0	intron_retention	FALSE	canonical	3	75	junction_28	155.568509150593	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAGTAGTACTTTCTTT	NA	False	NA	4	True	AATAAA	-21	NA	150586322	150718413	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659904_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679558_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150689260_150689360_150689946_150690081_150690271_150690441_150691723_150691953_150692404_150692584_150692855_150692946_150693096_150693252_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ES_00062045	chrX	+	14579	83	FSM	ENSMUSG00000025261.19	ENSMUST00000026292.15	14579	83	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_16	155.992592374347	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAGTAGTACTTTCTTT	NA	False	NA	4	True	AATAAA	-21	NA	150586322	150718413	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659904_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679558_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150689260_150689360_150689946_150690081_150690271_150690441_150691723_150691953_150692404_150692584_150692855_150692946_150693096_150693252_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ES_00062047	chrX	+	1085	1	FSM	ENSMUSG00000082778.2	ENSMUST00000117933.2	1000	1	-57	-28	-57	28	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACTGAGAGCAAGAGAGA	NA	False	NA	NA	False	AAGAAA	-25	NA	150728306	150729391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_150728300_150729400
ES_00062052	chrX	+	5583	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	39	1233	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGAGTGGTTTTGCCTG	NA	False	NA	NA	False	TTTAAA	-19	NA	150799462	150846923	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
ES_00062054	chrX	+	5668	26	NNC	ENSMUSG00000025332.15	novel	6449	26	NA	NA	0	-11	intron_retention	FALSE	canonical	3	164	junction_4	86.7100916848783	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTTGTTCAAAAGGAGA	NA	False	NA	10	True	AATAAA	-20	NA	151016224	151056753	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025035_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
ES_00062055	chrX	+	6449	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112588.9	6449	26	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_24	43.2417205948144	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTTGTGTCTGCCTTC	NA	False	NA	20	True	NA	NA	NA	151016224	151057531	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
ES_00062058	chrX	+	5480	25	NIC	ENSMUSG00000025332.15	novel	5900	26	NA	NA	19	-11	intron_retention	FALSE	canonical	3	39	junction_21	128.810153153995	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTTGTTCAAAAGGAGA	NA	False	NA	10	True	AATAAA	-20	NA	151016286	151056753	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151054007_151054590_151054855_151054935_151055070_151055271_151055704
ES_00062065	chrX	+	2438	11	FSM	ENSMUSG00000041658.13	ENSMUST00000039720.11	2258	11	-180	0	-180	0	multi-exon	FALSE	canonical	3	216	junction_4	30.0765689532566	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGTCTGTGTTTCTT	2996	False	NA	NA	False	AATAAA	-17	NA	151922796	151954939	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
ES_00062066	chrX	+	2354	10	NIC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	-180	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_3	67.8576942333489	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGTCTGTGTTTCTT	2996	False	NA	NA	False	AATAAA	-17	NA	151922796	151954939	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_151923572_151924359_151924394_151926971_151927072_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
ES_00062068	chrX	+	7687	7	FSM	ENSMUSG00000041649.14	ENSMUST00000112574.9	4752	7	-142	-2793	140	2793	multi-exon	FALSE	canonical	3	21	junction_2	59.2527542725981	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGGTTTTGTGTTTAAT	4125	False	NA	18	True	AATAAA	-19	NA	152020601	152181921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152021089_152091847_152091921_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ES_00062069	chrX	+	7508	7	NIC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	-96	2793	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	50.56349144063	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGGTTTTGTGTTTAAT	NA	False	NA	18	True	AATAAA	-19	NA	152142512	152181921	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_152142706_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ES_00062070	chrX	+	7763	7	NIC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	-96	2793	intron_retention	FALSE	canonical	3	13	junction_1	51.9123192401273	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGGTTTTGTGTTTAAT	NA	False	NA	18	True	AATAAA	-19	NA	152142512	152181921	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_152142961_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ES_00062071	chrX	+	7530	6	ISM	ENSMUSG00000041649.14	ENSMUST00000039545.5	4407	8	468	-3128	468	2793	3prime_fragment	FALSE	canonical	3	100	junction_1	23.8964432499902	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGGTTTTGTGTTTAAT	NA	False	NA	18	True	AATAAA	-19	NA	152143076	152181921	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ES_00062073	chrX	+	3344	1	FSM	ENSMUSG00000050148.10	ENSMUST00000060714.10	3344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	319	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTTATTTTGCCTTTT	7332	False	NA	13	True	ATTAAA	-40	NA	152281222	152284566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152281200_152284600
ES_00062074	chrX	+	804	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	-16	0	-16	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506569	152524260	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
ES_00062075	chrX	+	1157	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	-17	206	0	-206	multi-exon	FALSE	canonical	3	65	junction_2	49	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGTAGATCTGAAAGCA	NA	False	NA	NA	False	AATAAA	-23	NA	152506588	152524710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152506934_152508700_152508838_152524035
ES_00062077	chrX	+	1303	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	0	6	0	-6	multi-exon	FALSE	canonical	3	21	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAATTAGTCATCTAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	152615288	152617233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152615545_152616186
ES_00062078	chrX	+	218	1	FSM	ENSMUSG00000083823.4	ENSMUST00000120127.2	994	1	396	380	396	-380	mono-exon	FALSE	NA	NA	NA	NA	NA	3865	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGACCTGATACCAGGT	NA	False	NA	NA	False	NA	NA	NA	153938586	153938804	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_153938600_153938800
ES_00062080	chrX	+	1752	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	0	0	0	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154045438	154080650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ES_00062082	chrX	+	1740	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGATTGTGAGTCTCC	NA	False	NA	18	True	AATAAA	-12	NA	154045500	154080642	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ES_00062083	chrX	+	4163	6	FSM	ENSMUSG00000025287.16	ENSMUST00000126200.2	844	6	-2578	-741	-2578	0	multi-exon	FALSE	canonical	3	900	junction_4	93.2952303175248	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154074260	154080650	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576
ES_00062084	chrX	+	218	2	Antisense	novelGene_ENSMUSG00000081505.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGGAGTTTTGACCTTT	NA	False	NA	NA	False	NA	NA	NA	156381742	156435768	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_+_156381768_156435575
ES_00062086	chrX	+	7264	22	FSM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	-20	0	-20	0	multi-exon	FALSE	canonical	3	10	junction_1	12.5162932360936	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTTTCTTTTTATCCG	NA	False	NA	NA	False	AATAAA	-16	NA	158038833	158151240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158039185_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ES_00062088	chrX	+	5046	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	0	126	0	-126	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	852	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTGTGAAAACCTGTAC	5347	False	NA	NA	False	NA	NA	NA	158155173	158172798	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ES_00062089	chrX	+	3624	16	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	30.6328799386106	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGCCATTGACCTTGA	NA	False	NA	7	True	AATAAA	-18	NA	158197514	158281753	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272_158272496_158273675_158273781_158274763_158274821_158275319_158275408_158275893_158276081_158279030_158279306_158280579
ES_00062091	chrX	+	1097	7	FSM	ENSMUSG00000041020.15	ENSMUST00000112470.3	1350	7	253	0	241	0	multi-exon	FALSE	canonical	1	10	junction_6	65.958109601642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCTGGAAAGCCCAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	158242373	158269619	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158269421
ES_00062092	chrX	+	3612	12	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	102	-1	intron_retention	TRUE	canonical	3	25	junction_1	179.30540915451	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTGAGAGCATTCTTT	NA	False	NA	22	True	AATAAA	-35	NA	158309785	158376076	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ES_00062093	chrX	+	3366	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_9	109.675027103931	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315663	158376077	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ES_00062094	chrX	+	4242	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	0	81	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_9	209.935109021812	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTCCATTTGTTCTTT	NA	False	NA	104	True	NA	NA	NA	158315714	158376158	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340441_158340554_158341330_158341395_158342833_158342950_158349423_158350362_158350914_158351011_158357940_158358094_158374327_158374354_158375066
ES_00062095	chrX	+	3958	8	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-15	30438	-15	10067	5prime_fragment	FALSE	canonical	3	421	junction_5	81.1237402027902	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAACATTTGTGTGCAA	NA	False	NA	4	True	NA	NA	NA	158315699	158344952	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
ES_00062096	chrX	+	2513	11	FSM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	176.193756983612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTGAAAGCTTTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	158315714	158375390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158350914_158351011_158357940_158358094_158375066
ES_00062099	chrX	+	3565	18	FSM	ENSMUSG00000040990.18	ENSMUST00000112456.9	7317	18	-150	3902	-150	0	multi-exon	FALSE	canonical	3	14	junction_4	4.015540744912	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGGGGGGGAATTGGA	NA	False	NA	16	True	AATAAA	-21	NA	158410117	158757163	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158410688_158466539_158466698_158547007_158547132_158586715_158586820_158599572_158599703_158611369_158611576_158648320_158648397_158661117_158661213_158684671_158684780_158696984_158697037_158700231_158700313_158702753_158702914_158726192_158726279_158741208_158741319_158744760_158744890_158749209_158749479_158754857_158754922_158756120
ES_00062101	chrX	+	4588	29	FSM	ENSMUSG00000031303.9	ENSMUST00000033665.9	4348	29	-240	0	-240	0	multi-exon	FALSE	canonical	3	16	junction_1	11.3624762858691	689	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTTCCCTTATTTTGA	NA	False	NA	13	True	ATTAAA	-21	NA	158771188	158906347	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_158771802_158784900_158785041_158787158_158787183_158823985_158824180_158827056_158827226_158829612_158829720_158855833_158856005_158858590_158858704_158859124_158859285_158862909_158863061_158864780_158864889_158866859_158866910_158869313_158869410_158872799_158872888_158874576_158874711_158877291_158877420_158880972_158881104_158881316_158881423_158895401_158895560_158898054_158898239_158898880_158899047_158899514_158899690_158900650_158900837_158901536_158901643_158902505_158902720_158904641_158904755_158905357_158905459_158905529_158905607_158905922
ES_00062102	chrX	+	500	4	FSM	ENSMUSG00000031295.14	ENSMUST00000139587.8	479	4	-21	0	-15	0	multi-exon	FALSE	canonical	3	12	junction_1	33.5592345297419	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGGTGAAATGTGACAAA	NA	False	NA	NA	False	NA	NA	NA	159285146	159310772	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159285289_159285748_159285901_159306267_159306427_159310725
ES_00062103	chrX	+	3962	34	FSM	ENSMUSG00000031295.14	ENSMUST00000112377.8	3947	34	-15	0	-15	0	multi-exon	FALSE	canonical	3	9	junction_1	19.1295904422098	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285146	159374137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159285289_159285742_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ES_00062105	chrX	+	4140	33	FSM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	-7	0	-7	0	multi-exon	FALSE	canonical	3	71	junction_12	13.3855098894289	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285422	159374137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ES_00062108	chrX	+	3092	27	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14644	-183	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	107.49308495717	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAGTTTAGAGATAATT	4675	False	NA	NA	False	AATAAA	-20	NA	159921907	160039699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062109	chrX	+	4509	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14649	-1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_16	108.784969550026	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGCCTTGGATGTTAT	4680	False	NA	18	True	AATAAA	-27	NA	159921912	160041208	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992607_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062110	chrX	+	4498	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14663	-1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_16	103.266459220794	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGCCTTGGATGTTAT	4694	False	NA	18	True	AATAAA	-27	NA	159921926	160041208	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062111	chrX	+	3137	25	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12797	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	108.341281759694	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATGTCTTCAGTTATT	8022	False	NA	NA	False	ATTAAA	-14	NA	159932948	160039896	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062114	chrX	+	4589	26	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	-12797	-1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_15	117.681101286485	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGCCTTGGATGTTAT	8022	False	NA	18	True	AATAAA	-27	NA	159932948	160041208	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020487_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
ES_00062115	chrX	+	4360	24	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12789	-1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	112.115488661164	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGCCTTGGATGTTAT	8030	False	NA	18	True	AATAAA	-27	NA	159932956	160041208	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159933107_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992607_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062116	chrX	+	4852	26	FSM	ENSMUSG00000000037.18	ENSMUST00000019101.11	4842	26	-10	0	-10	0	multi-exon	FALSE	canonical	3	8	junction_13	115.162146558667	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACAGCAATTAACAGCT	1347	False	NA	2	True	AATAAA	-11	NA	159945757	160041192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159946245_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062117	chrX	+	4857	26	FSM	ENSMUSG00000000037.18	ENSMUST00000112345.8	4847	26	-10	0	-10	0	multi-exon	FALSE	canonical	2	8	junction_13	119.872265349413	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGCCTTGGATGTTATT	1347	False	NA	19	True	AATAAA	-28	NA	159945757	160041209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159946245_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020487_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00062123	chrX	+	1881	12	FSM	ENSMUSG00000031353.14	ENSMUST00000112327.8	1862	12	-19	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	868.427533053443	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATTGGCTTTGCAGA	NA	False	NA	-32	True	NA	NA	NA	161543397	161561752	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ES_00062124	chrX	+	2244	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATATCTGCATCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	161543397	161562088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ES_00062127	chrX	+	3431	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-27	-51	0	51	multi-exon	FALSE	canonical	2	133	junction_1	30.7828415409191	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGAGTGAACACTTGT	NA	False	NA	NA	False	AAAACA	-21	NA	161684600	161815555	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ES_00062128	chrX	+	3099	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	0	0	0	0	multi-exon	FALSE	canonical	2	41	junction_1	44.8724185955837	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATGCAGTGTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	161684865	161815321	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_161684911_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ES_00062130	chrX	+	1992	5	FSM	ENSMUSG00000031367.16	ENSMUST00000033734.14	1785	5	-207	0	-82	0	multi-exon	FALSE	canonical	3	11	junction_4	61.936963923008	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTGGTGTGCTTTTC	NA	False	NA	2	True	AATAAA	-9	NA	162691930	162716355	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162715128
ES_00062131	chrX	+	3202	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	-3	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692137	162712542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
ES_00062132	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	False	NA	NA	False	TATAAA	-15	NA	163052426	163156007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ES_00062133	chrX	+	4170	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112255.8	3597	6	-36	-537	-36	534	multi-exon	FALSE	canonical	2	7	junction_1	94.8113917206155	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAACGTAAAGTGAAA	NA	False	NA	NA	False	NA	NA	NA	163202868	163217446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163202965_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ES_00062134	chrX	+	3803	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	-214	5	-214	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202568	163216907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ES_00062135	chrX	+	3932	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	-181	-539	-181	534	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAACGTAAAGTGAAA	NA	False	NA	NA	False	NA	NA	NA	163202601	163217446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ES_00062136	chrX	+	4064	6	FSM	ENSMUSG00000031381.17	ENSMUST00000151911.9	3903	6	-166	5	-166	0	multi-exon	FALSE	canonical	2	5	junction_2	95.333939392013	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202616	163216907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163202837_163205579_163206669_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ES_00062137	chrX	+	2953	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	0	0	0	0	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTTGTTTTCTTTTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	163763587	163780265	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
ES_00062138	chrX	+	1389	5	FSM	ENSMUSG00000040621.15	ENSMUST00000130880.9	1389	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	17.0293863659264	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_164953547_164959840_164960076_164961787_164961827_164963348_164963806_164972239
ES_00062139	chrX	+	1862	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGGATTTGATCTAC	NA	False	NA	NA	False	NA	NA	NA	164953449	164973508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
ES_00062141	chrX	+	985	3	FSM	ENSMUSG00000040621.15	ENSMUST00000152248.2	964	3	-21	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	11	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCCCTGGGAGCGGCGC	NA	False	NA	NA	False	NA	NA	NA	164961397	164972338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_164961827_164963348_164963806_164972239
ES_00062142	chrX	+	1618	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	0	-5	0	5	multi-exon	FALSE	canonical	0	0	junction_3	101.671038157383	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCATTTGATGCCTATTT	NA	False	NA	14	True	AATAAA	-19	NA	165223569	165236141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ES_00062144	chrX	+	884	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	-23	-60	-23	60	mono-exon	FALSE	NA	NA	NA	NA	NA	1590	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAATATTTATCTAGAGA	NA	False	NA	NA	False	ATTAAA	-16	NA	165637183	165638067	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_165637200_165638100
ES_00062148	chrX	+	1078	4	NNC	ENSMUSG00000095562.9	novel	583	3	NA	NA	-387	64	intron_retention	FALSE	canonical	3	229	junction_2	138.898044142697	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGTAGACCAGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	168792267	168802341	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_168792487_168792588_168792759_168793669_168793885_168801867
ES_00062149	chrX	+	396	2	Intergenic	novelGene_4526	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	35	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCCAAAACTTTTATCA	7782	False	NA	NA	False	NA	NA	NA	168803029	168805566	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_168803212_168805352
ES_00062152	chrX	+	2683	5	Intergenic	novelGene_4533	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	48	junction_1	16.3764312351623	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCGGCGTCGGCTCCTCC	306	False	NA	3	True	AATAAA	-17	NA	169098116	169105547	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_169098429_169099929_169100868_169101639_169101789_169102375_169102617_169104504
ES_00062153	chrX	-	2596	1	FSM	ENSMUSG00000081232.4	ENSMUST00000122467.2	2158	1	1668	-2106	1668	2106	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATGATAAACATTTAAA	NA	False	NA	NA	False	GATAAA	-22	NA	5612270	5609674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_5609700_5612300
ES_00062155	chrX	-	1838	2	FSM	ENSMUSG00000073294.5	ENSMUST00000101698.4	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_5994830_5995192
ES_00062156	chrX	-	2202	1	FSM	ENSMUSG00000073294.5	ENSMUST00000117544.2	2201	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGTTGTGGTACAAT	NA	False	NA	2	True	AATAAA	-25	NA	5995473	5993271	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_5993300_5995500
ES_00062157	chrX	-	1775	2	FSM	ENSMUSG00000073293.5	ENSMUST00000103006.4	1775	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGAGTCCTTATAATTA	NA	False	NA	8	True	NA	NA	NA	6085069	6080749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_6081851_6084395
ES_00062158	chrX	-	8404	12	FSM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	13	-27	13	27	multi-exon	FALSE	canonical	3	32	junction_11	7.74596669241483	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGAGTGTTGATTTTT	NA	False	NA	27	True	NA	NA	NA	7054940	7020021	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
ES_00062159	chrX	-	8827	14	NIC	ENSMUSG00000004317.15	novel	3052	15	NA	NA	-28	27	combination_of_known_junctions	FALSE	canonical	2	11	junction_12	15.0816319177261	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGAGTGTTGATTTTT	3103	False	NA	27	True	NA	NA	NA	7185625	7020021	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7182897_7183063_7185344
ES_00062160	chrX	-	1073	7	FSM	ENSMUSG00000004317.15	ENSMUST00000128319.2	1073	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_5	17.3533538225004	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCTCTTGTCAAGGCAT	3131	False	NA	NA	False	NA	NA	NA	7185597	7037437	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7182897_7183063_7185344
ES_00062161	chrX	-	561	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	0	-21	0	5	multi-exon	FALSE	canonical	3	121	junction_1	0	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTCTTTCAGTGTCTTT	NA	False	NA	-7	True	NA	NA	NA	7289227	7278320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7278772_7289117
ES_00062162	chrX	-	741	3	ISM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	15481	-3	-6674	0	3prime_fragment	FALSE	canonical	3	36	junction_1	10.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7295901	7278341	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_7278772_7290368_7290524_7295745
ES_00062163	chrX	-	235	2	Intergenic	novelGene_4286	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	58	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCGAGAACTAAATGACTCA	NA	False	NA	NA	False	NA	NA	NA	7327802	7315395	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_7315580_7327751
ES_00062164	chrX	-	3429	4	FSM	ENSMUSG00000039556.17	ENSMUST00000115742.9	3066	4	-18	-345	17	345	multi-exon	FALSE	canonical	2	7	junction_3	1.4142135623731	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAGCAAAATAAAACACAAT	NA	False	NA	NA	False	AATAAA	-11	NA	7440505	7424845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7427123_7430100_7430181_7430474_7430528_7439486
ES_00062165	chrX	-	2238	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	117	-2	117	2	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCTTAGGCATGGATTGG	NA	False	NA	-7	True	AATAAA	-21	NA	7471639	7460045	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
ES_00062166	chrX	-	1231	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	0	-19	0	0	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537611	7534179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
ES_00062167	chrX	-	1157	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
ES_00062168	chrX	-	274	1	Intergenic	novelGene_4287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATATAAAGTTAAATGGTT	NA	False	NA	NA	False	NA	NA	NA	7548639	7548365	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_7548400_7548600
ES_00062169	chrX	-	3856	10	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	-20	0	intron_retention	FALSE	canonical	3	16	junction_9	8.46926177784867	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGAGTCTCTGTCTG	NA	False	NA	-4	True	AATAAA	-14	NA	7617164	7597952	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7616836
ES_00062170	chrX	-	1105	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	-1	0	1	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGGCTTGAGTGCTTCC	296	False	NA	0	True	AATAAA	-23	NA	7765508	7760756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
ES_00062171	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
ES_00062172	chrX	-	1139	7	NIC	ENSMUSG00000031157.11	novel	1148	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	180.072824774373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765018
ES_00062173	chrX	-	974	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	0	-211	0	0	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	565	False	NA	-65	True	NA	NA	NA	7765239	7760821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
ES_00062175	chrX	-	1081	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	0	-4	0	4	multi-exon	FALSE	canonical	3	21	junction_1	0	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGTTTTTCTTTTCTTC	NA	False	NA	NA	False	AATAAA	-35	NA	7794846	7790510	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7791453_7794707
ES_00062176	chrX	-	3894	29	NNC	ENSMUSG00000031161.16	novel	4069	29	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_28	77.9875709615949	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTTTTTTTTTTATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	7814006	7796354	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813945
ES_00062177	chrX	-	4135	29	FSM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	7	0	7	0	multi-exon	FALSE	canonical	3	77	junction_28	71.4613049995933	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGTGCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	7814121	7796360	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813813
ES_00062178	chrX	-	5045	27	FSM	ENSMUSG00000031161.16	ENSMUST00000137499.8	5037	27	0	-8	0	4	multi-exon	FALSE	canonical	3	285	junction_26	48.1528631012951	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTTTTTTTTTTATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	7814077	7796354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
ES_00062179	chrX	-	4061	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	12	-4	12	4	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTTTTTTTTTTATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	7814116	7796354	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
ES_00062181	chrX	-	956	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2661	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882070	7870438	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
ES_00062182	chrX	-	649	4	FSM	ENSMUSG00000031163.3	ENSMUST00000033503.3	673	4	24	0	24	0	multi-exon	FALSE	canonical	2	4	junction_3	18.5472369909914	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7884707	7870438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7870742_7871941_7872098_7881456_7881595_7884655
ES_00062183	chrX	-	547	1	FSM	ENSMUSG00000080877.2	ENSMUST00000118652.2	386	1	-100	-61	-100	61	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAGCCAAATTACCTTCA	NA	False	NA	NA	False	NA	NA	NA	7905335	7904788	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7904800_7905300
ES_00062184	chrX	-	2796	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	0	-18	0	9	multi-exon	TRUE	canonical	3	73	junction_5	15.551205741035	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGAGGTCTTGATGATA	7355	False	NA	NA	False	NA	NA	NA	7940497	7927655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
ES_00062186	chrX	-	3116	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAAGCTGGGCCCTT	9880	False	NA	NA	False	NA	NA	NA	7940999	7927409	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
ES_00062187	chrX	-	2523	1	NIC	ENSMUSG00000039231.19	novel	2707	4	NA	NA	3983	-344	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTTCCTTTATGCTAGG	NA	False	NA	NA	False	NA	NA	NA	7936514	7933991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_7934000_7936500
ES_00062189	chrX	-	2497	12	FSM	ENSMUSG00000031165.7	ENSMUST00000033505.7	2114	12	-93	-290	-93	290	multi-exon	FALSE	canonical	2	6	junction_8	4.36552989219744	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTATGATTTGGGAGA	7348	False	NA	NA	False	TTTAAA	-9	NA	7956830	7947401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7948229_7951744_7951860_7952080_7952536_7952802_7952957_7953168_7953212_7953999_7954175_7954962_7955017_7955112_7955155_7955274_7955378_7955494_7955582_7956082_7956224_7956529
ES_00062190	chrX	-	4183	9	FSM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	7.92839044194974	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCCTCTCTTCATTTG	6921	False	NA	1	True	AATAAA	-21	NA	7999047	7989539	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
ES_00062191	chrX	-	4164	9	FSM	ENSMUSG00000031166.14	ENSMUST00000133292.8	4197	9	31	2	-4	-2	multi-exon	FALSE	canonical	2	3	junction_8	12.5797456254091	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTGGGCCTCTCTTCA	6902	False	NA	-3	True	AATAAA	-42	NA	7999066	7989543	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997831_7998525
ES_00062192	chrX	-	3581	10	NNC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	105	-6	at_least_one_novel_splicesite	FALSE	non_canonical	2	6	junction_8	13.2245562832516	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTAGACTTGGGCCTCTC	7323	False	NA	-7	True	AATAAA	-38	NA	7998645	7989547	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7991381_7991484_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997711_7997865_7998525
ES_00062193	chrX	-	4374	9	FSM	ENSMUSG00000031166.14	ENSMUST00000130832.8	4374	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	12.8980376414399	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGTTGCTGGTT	6959	False	NA	-22	True	AATAAA	-23	NA	7999009	7989562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7998117_7998525
ES_00062194	chrX	-	2795	7	FSM	ENSMUSG00000031167.17	ENSMUST00000040010.10	2792	7	0	-3	0	0	multi-exon	FALSE	canonical	3	26	junction_1	443.550604653955	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTGTTACACGTATGT	6561	False	NA	0	True	ATTAAA	-19	NA	8011936	8005213	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8007448_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ES_00062195	chrX	-	1161	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	-9	0	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	6562	False	NA	-7	True	ATTAAA	-25	NA	8011935	8008597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ES_00062196	chrX	-	1185	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	-2	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	6535	False	NA	-7	True	ATTAAA	-25	NA	8011962	8008597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ES_00062197	chrX	-	1225	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115616.8	1225	7	7	-7	7	0	multi-exon	FALSE	canonical	3	529	junction_2	255.122192945524	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6492	False	NA	-9	True	ATTAAA	-23	NA	8012005	8008599	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ES_00062198	chrX	-	1274	6	FSM	ENSMUSG00000031167.17	ENSMUST00000141925.8	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	764	junction_2	204.799804687407	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCTGCGCTGAAACGTC	6536	False	NA	NA	False	TATAAA	-7	NA	8011961	8009128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010919_8011193_8011312_8011876
ES_00062200	chrX	-	2700	4	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8335	422	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	57.1858568373529	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGATGGTGGCAGCAG	5217	False	NA	NA	False	NA	NA	NA	8033795	8020288	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429
ES_00062201	chrX	-	2847	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	223	-422	0	422	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGATGGTGGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	8042197	8020288	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
ES_00062202	chrX	-	2203	5	FSM	ENSMUSG00000039201.11	ENSMUST00000143984.2	2184	5	0	-19	0	0	multi-exon	FALSE	canonical	3	5	junction_3	59.3738157776641	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042130	8020710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8040439_8040550_8041949
ES_00062203	chrX	-	1223	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	614	-94	0	94	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGTCTGCCCTTACAAA	NA	False	NA	91	True	CATAAA	-22	NA	8059137	8051473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ES_00062204	chrX	-	1844	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	0	-5	0	3	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGTTTTTTGGTTTTTTGT	1988	False	NA	3	True	AATAAA	-22	NA	8072740	8060083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
ES_00062205	chrX	-	1884	14	FSM	ENSMUSG00000031169.14	ENSMUST00000082320.12	1883	14	0	-1	0	1	multi-exon	FALSE	canonical	1	2	junction_7	23.6039812106789	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGGTTTTTTGGTTTTTT	1964	False	NA	1	True	AATAAA	-20	NA	8072764	8060085	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069264_8069283_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
ES_00062206	chrX	-	2489	13	FSM	ENSMUSG00000031171.12	ENSMUST00000033513.10	3425	13	0	936	0	816	multi-exon	FALSE	canonical	3	43	junction_4	72.5114933418604	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACTCGGCAGGCAGATT	NA	False	NA	NA	False	NA	NA	NA	8118645	8105842	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111895_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ES_00062207	chrX	-	1529	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115594.8	1529	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	84.1872912024137	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118549	8106658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8107070_8111298_8111341_8111522_8111670_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ES_00062208	chrX	-	1656	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118634	8106658	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ES_00062209	chrX	-	1362	5	FSM	ENSMUSG00000031171.12	ENSMUST00000147467.2	1047	5	-319	4	-276	-4	multi-exon	FALSE	canonical	3	296	junction_2	13.7386316640341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCCTTGTGAAGTCAAT	NA	False	NA	NA	False	AATAAA	-12	NA	8118921	8114764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ES_00062210	chrX	-	1527	1	FSM	ENSMUSG00000082458.2	ENSMUST00000121232.2	1527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCTTTCAGGACTCCTG	NA	False	NA	NA	False	NA	NA	NA	8530067	8528540	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8528500_8530100
ES_00062211	chrX	-	918	1	FSM	ENSMUSG00000078208.2	ENSMUST00000105006.2	842	1	-75	-1	-75	1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAAGTTGATGTTTAAAT	NA	False	NA	NA	False	AATAAA	-32	NA	8829289	8828371	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8828400_8829300
ES_00062212	chrX	-	850	1	FSM	ENSMUSG00000060685.5	ENSMUST00000075792.5	850	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGTTTAAATTCTTAAC	NA	False	NA	NA	False	AATAAA	-39	NA	8842798	8841948	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8841900_8842800
ES_00062213	chrX	-	863	1	FSM	ENSMUSG00000078206.2	ENSMUST00000105004.2	856	1	0	-7	0	7	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGATGTTTAAATTCTTAA	NA	False	NA	NA	False	AATAAA	-38	NA	8852994	8852131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8852100_8853000
ES_00062214	chrX	-	210	1	FSM	ENSMUSG00000083468.2	ENSMUST00000119765.2	1051	1	975	-134	975	134	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGATCCATAGTCAGAAA	NA	False	NA	NA	False	NA	NA	NA	8875341	8875131	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8875100_8875300
ES_00062215	chrX	-	621	1	FSM	ENSMUSG00000083670.2	ENSMUST00000119858.2	360	1	-80	-181	-80	181	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTCACTCAGCATCCACT	NA	False	NA	NA	False	NA	NA	NA	9194427	9193806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_9193800_9194400
ES_00062216	chrX	-	1115	2	Intergenic	novelGene_4298	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	34	junction_1	0	3956	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGTGGTTGCGTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9198851	9195213	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_9196165_9198687
ES_00062217	chrX	-	272	3	FSM	ENSMUSG00000015340.11	ENSMUST00000131591.2	928	3	0	656	0	-656	multi-exon	FALSE	canonical	2	2	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGCAAACACTCTGTC	NA	False	NA	NA	False	NA	NA	NA	9335509	9331882	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_9331994_9333321_9333418_9335444
ES_00062218	chrX	-	2176	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529242	9520505	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
ES_00062219	chrX	-	2737	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	182	7	-5	-7	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGATATGTGCTTGGA	NA	False	NA	-7	True	AATAAA	-25	NA	10082977	10024461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ES_00062220	chrX	-	6983	15	FSM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	-34	-8	-34	8	multi-exon	FALSE	canonical	3	55	junction_8	42.398077064597	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTGCATCCTTTGTAT	NA	False	NA	2	True	AATAAA	-27	NA	11946826	11902970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ES_00062221	chrX	-	6896	15	FSM	ENSMUSG00000040363.16	ENSMUST00000065143.14	6839	15	-54	-3	-54	3	multi-exon	FALSE	canonical	3	70	junction_8	40.8733733995767	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGTACTTTGCATCCTT	NA	False	NA	-3	True	AATAAA	-22	NA	11946846	11902975	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ES_00062222	chrX	-	7150	15	NNC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	1618	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	51.0719780190224	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	11945174	11902978	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11944229
ES_00062223	chrX	-	6260	15	NIC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_14	49.9731050114939	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	12026582	11902978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_12026527
ES_00062226	chrX	-	813	1	FSM	ENSMUSG00000083199.2	ENSMUST00000117810.2	759	1	-3	-51	-3	51	mono-exon	FALSE	NA	NA	NA	NA	NA	1514	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGATAAAACCCCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	12486474	12485661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_12485700_12486500
ES_00062227	chrX	-	2724	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	-25	0	25	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCGCATGAATAACACAC	NA	False	NA	22	True	NA	NA	NA	12539907	12521092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ES_00062228	chrX	-	6964	31	FSM	ENSMUSG00000064127.14	ENSMUST00000096495.11	6963	31	0	-1	0	1	multi-exon	TRUE	canonical	3	55	junction_7	16.6631996393917	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTCTCTTTGGTGAAGA	NA	False	NA	-2	True	AATAAA	-29	NA	12628312	12541606	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ES_00062229	chrX	-	3663	16	FSM	ENSMUSG00000064127.14	ENSMUST00000115481.8	3729	16	77	-11	77	11	multi-exon	FALSE	canonical	3	55	junction_6	10.2580050042231	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTAGCAAATTTTCTAC	NA	False	NA	NA	False	ATTAAA	-24	NA	12582320	12545262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185
ES_00062230	chrX	-	2559	17	FSM	ENSMUSG00000064127.14	ENSMUST00000076016.6	2561	17	0	2	0	-2	multi-exon	FALSE	canonical	1	1	junction_1	27.2362350555285	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTTAAAGTGTCTAATT	NA	False	NA	NA	False	AATAAA	-19	NA	12628312	12575369	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_12575480_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ES_00062231	chrX	-	2409	11	NNC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	238	-33565	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	26.949768088056	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGGCATCTAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	12628074	12608932	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_12609903_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ES_00062232	chrX	-	332	1	Intergenic	novelGene_4306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCATACCATGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	12904979	12904647	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_12904600_12905000
ES_00062233	chrX	-	393	1	FSM	ENSMUSG00000083364.5	ENSMUST00000122000.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAGACTGGCAAGGG	NA	False	NA	NA	False	NA	NA	NA	13084841	13084448	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_13084400_13084800
ES_00062234	chrX	-	8599	26	FSM	ENSMUSG00000031012.18	ENSMUST00000115438.10	8366	26	-233	0	-76	0	multi-exon	FALSE	canonical	3	85	junction_8	22.9097708412808	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACGTGTCTCCTCAGATT	NA	False	NA	NA	False	AATAAA	-19	NA	13713050	13383318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ES_00062235	chrX	-	4057	25	FSM	ENSMUSG00000031012.18	ENSMUST00000033321.11	4057	25	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_7	23.235172990294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTAGTGAAATGTGTTT	NA	False	NA	-23	True	TATAAA	-36	NA	13712795	13387569	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ES_00062238	chrX	-	2279	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68064	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117543	16998287	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ES_00062239	chrX	-	1983	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	0	0	0	0	multi-exon	TRUE	canonical	3	209	junction_3	21.435951110226	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	False	NA	-9	True	AATAAA	-21	NA	17438564	17422802	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
ES_00062240	chrX	-	352	1	FSM	ENSMUSG00000084830.3	ENSMUST00000117527.2	174	1	-60	-118	-60	118	mono-exon	FALSE	NA	NA	NA	NA	NA	10727	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAGATAAACAATTTAAATA	NA	False	NA	NA	False	AATAAA	-23	NA	20447613	20447261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20447300_20447600
ES_00062241	chrX	-	654	5	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	196	33514	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1081.59176679559	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	20483662	20448050	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_20448083_20481566_20481782_20481952_20482084_20483298_20483521_20483608
ES_00062242	chrX	-	202	1	FSM	ENSMUSG00000064398.3	ENSMUST00000082464.3	173	1	-41	12	-41	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCATTCATTGTAGGTGG	NA	False	NA	NA	False	NA	NA	NA	20480975	20480773	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20480800_20481000
ES_00062243	chrX	-	800	4	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_3	964.303317887525	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483838	20481564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_20481782_20481952_20482084_20483298_20483521_20483608
ES_00062244	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20481782_20481952_20482084_20483298
ES_00062245	chrX	-	4095	12	NIC	ENSMUSG00000037217.16	novel	3209	13	NA	NA	4	1	intron_retention	FALSE	canonical	3	43	junction_8	5.56405227203613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCTGTGCTTCTTGGTA	NA	False	NA	-1	True	AATAAA	-18	NA	20787153	20726752	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_20729330_20729421_20729510_20729822_20729970_20730999_20731103_20731193_20731269_20731357_20731501_20732084_20732148_20773315_20773406_20774189_20774347_20775575_20775668_20775763_20775822_20786651
ES_00062246	chrX	-	3259	13	FSM	ENSMUSG00000037217.16	ENSMUST00000115345.8	3261	13	0	2	0	2	multi-exon	FALSE	canonical	3	14	junction_1	11.6198465279595	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTGTGCTTCTTGGTAA	NA	False	NA	0	True	AATAAA	-19	NA	20787243	20726751	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20727811_20728737_20729330_20729421_20729510_20729822_20729970_20730999_20731103_20731193_20731269_20731357_20731501_20732084_20732148_20773315_20773406_20774189_20774347_20775575_20775668_20775763_20775822_20786651
ES_00062247	chrX	-	1640	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	0	-4	0	4	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTGTGAAATATTCTG	NA	False	NA	77	True	AATAGA	-17	NA	20797794	20791688	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
ES_00062249	chrX	-	3548	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	20816847	20799633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
ES_00062250	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	False	NA	NA	False	CATAAA	-22	NA	20828256	20817900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ES_00062251	chrX	-	659	6	FSM	ENSMUSG00000001134.10	ENSMUST00000150719.8	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	55.8619727542807	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828154	20818161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918
ES_00062253	chrX	-	3160	5	FSM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	3.67423461417477	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATATTGTATTCCTTTAA	3236	False	NA	-5	True	TTTAAA	-1	NA	20928291	20895181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926797_20928176
ES_00062254	chrX	-	220	3	FSM	ENSMUSG00000031079.13	ENSMUST00000154299.2	651	3	406	25	406	-25	multi-exon	FALSE	canonical	1	1	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAGAAAGGAGTCCTTG	7196	False	NA	NA	False	NA	NA	NA	20954819	20950205	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20950240_20950454_20950582_20954760
ES_00062255	chrX	-	3393	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3715	77887	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	456.26643721448	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTCATGAGACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	23185133	23007622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23007649_23085523_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23184851
ES_00062256	chrX	-	3248	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3357	77887	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTCATGAGACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	23227935	23007622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23007649_23085523_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
ES_00062257	chrX	-	3314	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3357	77887	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.236570008687	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTCATGAGACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	23227935	23007622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23007649_23085523_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
ES_00062258	chrX	-	3234	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	0	77887	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTCATGAGACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	23231292	23007622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23007649_23085523_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
ES_00062259	chrX	-	3258	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	0	-7	0	7	multi-exon	FALSE	canonical	3	241	junction_8	283.721694623446	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCTCAGTTTGATTTCC	NA	False	NA	-1	True	AATAAA	-36	NA	23231321	23085502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
ES_00062260	chrX	-	3300	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3715	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23185133	23085524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
ES_00062262	chrX	-	1089	1	FSM	ENSMUSG00000086691.3	ENSMUST00000121106.2	195	1	-73	-821	-73	821	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTATGAAATTTTTAGG	NA	False	NA	NA	False	NA	NA	NA	29313400	29312311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_29312300_29313400
ES_00062264	chrX	-	5372	6	FSM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-299	-3703	0	138	multi-exon	FALSE	canonical	3	34	junction_4	11.6687617166519	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTATTGACTGATCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	35909048	35871828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35900125_35900228_35908702
ES_00062265	chrX	-	6138	7	FSM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	0	-135	0	135	multi-exon	FALSE	canonical	3	11	junction_4	20.573040611441	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGACTATTGACTGATCA	NA	False	NA	NA	False	AATAAA	-18	NA	35909048	35871831	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35887220_35887990_35900125_35900228_35908702
ES_00062266	chrX	-	891	2	Antisense	novelGene_ENSMUSG00000084990.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTTTTTGCTTCGTCA	NA	False	NA	NA	False	NA	NA	NA	36080701	36078415	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_36078984_36080378
ES_00062267	chrX	-	1196	7	NIC	ENSMUSG00000006423.16	novel	678	3	NA	NA	1	8974	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	75.5389891968968	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTTTTTGCTTCGTCA	NA	False	NA	NA	False	NA	NA	NA	36127807	36078415	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_36078984_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ES_00062268	chrX	-	3332	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	11	-3	3	3	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTTTTGATCATTTTAA	NA	False	NA	NA	False	AATAAA	-31	NA	36127888	36112192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ES_00062269	chrX	-	3856	3	FSM	ENSMUSG00000044149.8	ENSMUST00000239259.2	3882	3	26	0	26	0	multi-exon	FALSE	canonical	3	10	junction_2	0.5	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGCTGTAATTATTTCT	NA	False	NA	NA	False	AATAAA	-23	NA	36167140	36151192	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36154166_36155277_36155409_36166388
ES_00062270	chrX	-	3022	10	FSM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	122	313	-43	-313	multi-exon	FALSE	canonical	3	7	junction_1	15.297865581774	3484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGGGCAGCAGAGTGAGA	NA	False	NA	NA	False	AATAAA	-30	NA	36253187	36175291	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ES_00062271	chrX	-	3268	10	FSM	ENSMUSG00000050379.16	ENSMUST00000115239.10	1845	10	165	-1588	0	3	multi-exon	FALSE	canonical	3	5	junction_1	15.8869462681912	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTGGTGTTCTTCA	NA	False	NA	NA	False	ATTAAA	-17	NA	36253144	36177095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36179001_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ES_00062272	chrX	-	2075	10	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	5	-798	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.2940495640649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTCTTGATTCATAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	36253139	36179481	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ES_00062273	chrX	-	612	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	14611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36349055	36346172	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36346403_36347637_36347742_36348777
ES_00062274	chrX	-	3001	2	FSM	ENSMUSG00000065642.3_ENSMUSG00000079641.4	ENSMUST00000138799.2	488	2	0	-2513	0	1390	multi-exon	FALSE	canonical	3	12919	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTTATTTAAATCCAAGCA	NA	False	NA	NA	False	NA	NA	NA	36348819	36344782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36347742_36348777
ES_00062275	chrX	-	2383	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ES_00062276	chrX	-	2574	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	-81	-149	-81	149	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATTCTGACTTAAGTTC	NA	False	NA	NA	False	AATAAA	-8	NA	36374056	36355181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ES_00062278	chrX	-	2553	8	FSM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	43.5576090496534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAACAAAGTAACA	NA	False	NA	NA	False	NA	NA	NA	36373975	36361102	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ES_00062279	chrX	-	419	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	2951	junction_1	110	3489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	2312	False	NA	-1	True	AATAAA	-20	NA	36454816	36451240	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36451395_36453526_36453617_36454641
ES_00062280	chrX	-	817	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	2081	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCAAATTGAACAAATTTA	NA	False	NA	NA	False	ATTAAA	-12	NA	36474694	36473000	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
ES_00062281	chrX	-	831	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3918	-16	3918	16	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	1662	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTATTCATGTGTCTTC	NA	False	NA	-7	True	AATAAA	-17	NA	36481993	36477440	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
ES_00062282	chrX	-	843	1	FSM	ENSMUSG00000080241.4	ENSMUST00000116499.4	451	1	-100	-292	-100	292	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTATCTTCCAGTAGGT	NA	False	NA	24	True	AATAAA	-38	NA	36807850	36807007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36807000_36807800
ES_00062283	chrX	-	967	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	6	6	6	-6	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGACTCATGTGTCTTTT	6374	False	NA	NA	False	AATAAA	-15	NA	36832974	36828158	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
ES_00062284	chrX	-	784	4	FSM	ENSMUSG00000079627.3	ENSMUST00000115162.2	779	4	0	-5	0	-3	multi-exon	FALSE	canonical	3	6	junction_3	11.2644968324772	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTGTTTTGTGCTTCTT	9229	False	NA	NA	False	AATAAA	-17	NA	36854930	36850644	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36850876_36852672_36852719_36854261_36854674_36854835
ES_00062285	chrX	-	884	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	0	-2	0	2	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCTCCATTATCTTGG	1078	False	NA	1	True	AATAAA	-18	NA	36990647	36987971	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
ES_00062286	chrX	-	2184	9	FSM	ENSMUSG00000016534.16	ENSMUST00000074913.12	2184	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	322.044615503815	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATACTGTTCGTGTTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	37545331	37490233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37491159_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ES_00062287	chrX	-	2100	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	0	-331	0	331	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCGCCACCCAGCTAAGTA	NA	False	NA	NA	False	NA	NA	NA	37545331	37493607	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ES_00062288	chrX	-	3604	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	-22	True	AATAAA	-19	NA	37545331	37508383	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ES_00062289	chrX	-	5305	20	FSM	ENSMUSG00000031095.16	ENSMUST00000016681.15	3354	20	-166	-1785	-29	1785	multi-exon	FALSE	non_canonical	3	1064	junction_17	109.947758937101	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTTTGTTATTTTACTG	8126	False	NA	NA	False	NA	NA	NA	37653568	37620365	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539
ES_00062290	chrX	-	5079	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	13	-1748	0	1748	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACATTTGACAATTCATA	NA	False	NA	70	True	CATAAA	-23	NA	37665060	37620402	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
ES_00062291	chrX	-	3103	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	-13	0	0	0	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665073	37622450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
ES_00062293	chrX	-	579	1	FSM	ENSMUSG00000085611.4	ENSMUST00000117113.2	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTATTAAAAAGGCCACT	NA	False	NA	NA	False	TATAAA	-26	NA	37775047	37774468	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37774500_37775000
ES_00062295	chrX	-	7615	39	NIC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	0	-1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	37.7880900640998	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTGTATATTGTTACT	NA	False	NA	0	True	AATAAA	-25	NA	41000778	40883868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_40886657_40891823_40891864_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ES_00062296	chrX	-	220	3	FSM	ENSMUSG00000037475.16	ENSMUST00000130993.2	675	3	0	455	0	-455	multi-exon	FALSE	canonical	3	186	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAGTCTTTTAAAATCA	NA	False	NA	NA	False	NA	NA	NA	40903199	40901335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_40901372_40902826_40902886_40903074
ES_00062301	chrX	-	3532	2	FSM	ENSMUSG00000045284.10	ENSMUST00000060481.9	3509	2	1	-24	1	24	multi-exon	FALSE	canonical	3	37	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTAATTCATTTACAGG	NA	False	NA	19	True	AATAAA	-43	NA	43879073	43875422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_43877171_43877289
ES_00062302	chrX	-	3554	2	FSM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	-35	-24	1	24	multi-exon	FALSE	canonical	3	16	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTAATTCATTTACAGG	NA	False	NA	19	True	AATAAA	-43	NA	43879073	43875422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_43877171_43877267
ES_00062304	chrX	-	1512	8	FSM	ENSMUSG00000031099.17	ENSMUST00000141084.3	1965	8	0	453	0	-453	multi-exon	FALSE	canonical	3	9	junction_1	3.15581743348207	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTGATTCTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	46981309	46963659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
ES_00062305	chrX	-	3214	3	FSM	ENSMUSG00000037010.8	ENSMUST00000039026.8	3149	3	-65	0	-65	0	multi-exon	FALSE	canonical	2	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCCCATCTGTCTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	47123795	47114022	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47116585_47117170_47117343_47123315
ES_00062306	chrX	-	2984	10	FSM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	0	-2	0	2	multi-exon	FALSE	canonical	3	96	junction_4	12.3107902084129	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTCCTCCTTCCTC	NA	False	NA	0	True	ATTAAA	-18	NA	47297564	47260843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
ES_00062307	chrX	-	6409	9	FSM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	-324	3	-324	0	multi-exon	FALSE	canonical	3	68	junction_6	6.29359793758705	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTGTTCAGATTCCAAT	NA	False	NA	-1	True	NA	NA	NA	47543370	47499925	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47504324_47505523_47505902_47506747_47506941_47507031_47507116_47507884_47508077_47509152_47509246_47509580_47509753_47512954_47513232_47542748
ES_00062308	chrX	-	6545	10	NNC	ENSMUSG00000031103.13	novel	6088	9	NA	NA	-434	43	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	24.6486420631149	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGGGCAGGAAGAGGACAA	NA	False	NA	45	True	NA	NA	NA	47543480	47499879	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_47504324_47505523_47505902_47506747_47506941_47507031_47507116_47507884_47508077_47509152_47509246_47509580_47509753_47512954_47513232_47542748_47543099_47543118
ES_00062309	chrX	-	515	1	Intergenic	novelGene_4361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACTACTTTTCAATAG	NA	False	NA	NA	False	NA	NA	NA	47561200	47560685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_47560700_47561200
ES_00062310	chrX	-	2233	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	4	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	3172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ES_00062311	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
ES_00062312	chrX	-	4006	19	FSM	ENSMUSG00000036916.14	ENSMUST00000076635.13	4355	19	372	-23	0	23	multi-exon	FALSE	canonical	3	32	junction_17	17.6264391759848	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCCTTCTCACATGGA	NA	False	NA	67	True	AATAAA	-45	NA	47680638	47630478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549
ES_00062313	chrX	-	3887	18	FSM	ENSMUSG00000036916.14	ENSMUST00000114940.9	3863	18	0	-24	0	23	multi-exon	FALSE	canonical	3	24	junction_2	21.8484873935035	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCCTTCTCACATGGA	NA	False	NA	67	True	AATAAA	-45	NA	47680638	47630478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549
ES_00062314	chrX	-	4052	20	FSM	ENSMUSG00000036916.14	ENSMUST00000072292.12	4045	20	0	-7	0	7	multi-exon	FALSE	canonical	3	45	junction_17	15.8598431908636	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATCTAATACGAATTCTT	NA	False	NA	51	True	AATAAA	-29	NA	47683329	47630494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
ES_00062315	chrX	-	3839	18	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	20.3209541230373	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGCATCATCTAATACGAA	NA	False	NA	46	True	AATAAA	-24	NA	47680638	47630499	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549
ES_00062316	chrX	-	4010	20	NIC	ENSMUSG00000036916.14	novel	4024	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_17	17.5929663608489	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	43	True	AATAAA	-21	NA	47683268	47630502	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47683240
ES_00062318	chrX	-	3834	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114914.8	3936	16	0	102	0	-102	multi-exon	TRUE	canonical	2	12	junction_14	13.255774423079	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTCTTTTCGACAATAT	NA	False	NA	NA	False	NA	NA	NA	48377089	48098685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
ES_00062319	chrX	-	3226	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.7695042700313	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
ES_00062320	chrX	-	3167	15	FSM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	14.647560220329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
ES_00062321	chrX	-	823	1	FSM	ENSMUSG00000083754.4	ENSMUST00000117176.2	1015	1	196	-4	196	4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGGAACATTTGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	49415213	49414390	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_49414400_49415200
ES_00062324	chrX	-	6390	25	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	15	5	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	28.7184307351375	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAGATTGGAAAGGTAA	NA	False	NA	-4	True	AATAAA	-23	NA	49724165	49651996	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662019_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49684337_49684493_49687010_49687166_49689620_49689776_49692247_49692403_49694952_49695040_49695839_49695982_49697354_49697485_49697563_49697692_49700981_49701119_49701581_49701728_49704237_49704393_49715313_49715387_49716083_49716128_49719767_49719873_49723821
ES_00062329	chrX	-	3511	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	0	34	0	-34	multi-exon	FALSE	canonical	3	105	junction_1	4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTAAATGTTGATATA	NA	False	NA	NA	False	AATAAA	-18	NA	50106895	50092822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_50095628_50103847_50104161_50106502
ES_00062330	chrX	-	3817	4	NNC	ENSMUSG00000050029.8	novel	3545	3	NA	NA	-761	-374	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	34.5671648951558	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTCTTTAATTATT	NA	False	NA	-1	True	AATAAA	-21	NA	50107656	50093162	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_50095628_50103847_50104161_50106502_50107328_50107442
ES_00062332	chrX	-	2223	8	FSM	ENSMUSG00000036109.18	ENSMUST00000114876.9	2243	8	20	0	20	0	multi-exon	FALSE	canonical	3	6	junction_7	7.54848275064166	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGAGTAGCCATTACATT	NA	False	NA	NA	False	AATAAA	-24	NA	50294847	50208956	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294650
ES_00062333	chrX	-	3997	3	FSM	ENSMUSG00000062184.12	ENSMUST00000114871.2	4351	3	359	-5	-149	5	multi-exon	FALSE	canonical	0	0	junction_1	1	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAATCTCATGATTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	50770374	50476083	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_50479239_50768766_50769286_50770051
ES_00062334	chrX	-	6938	8	FSM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	62	-2880	62	2880	multi-exon	FALSE	canonical	3	16	junction_1	4.17475405605784	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGACTCAATAGTTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	50889959	50839955	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
ES_00062335	chrX	-	1396	4	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-11	3	combination_of_known_splicesites	FALSE	canonical	3	60	junction_2	10.4029910228848	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGCTCCGTTTCATTA	NA	False	NA	1	True	CATAAA	-20	NA	51061660	51057568	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_51058747_51059091_51059163_51059858_51059953_51061607
ES_00062340	chrX	-	395	1	FSM	ENSMUSG00000070106.3	ENSMUST00000093598.3	75	1	1	-321	1	321	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCTGAAATTTGCAAAAT	9972	False	NA	NA	False	AATATA	-39	NA	51830643	51830248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_51830200_51830600
ES_00062342	chrX	-	461	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	0	-53	0	53	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACCTCGTGCTGCAAAG	NA	False	NA	NA	False	AATAAA	-29	NA	51861626	51861165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_51861200_51861600
ES_00062343	chrX	-	3547	9	FSM	ENSMUSG00000036022.16	ENSMUST00000114838.8	3536	9	0	-11	0	1	multi-exon	FALSE	canonical	3	73	junction_3	8.54034542626936	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGCCTCTCTTATTCCT	NA	False	NA	-2	True	AATAAA	-35	NA	52357897	52332290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
ES_00062344	chrX	-	1773	6	FSM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	3.77359245282264	8343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCCTAAGCACAACGACT	NA	False	NA	NA	False	AATAAA	-20	NA	52459379	52433884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ES_00062346	chrX	-	1261	10	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	0	84403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.772711719051	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCAGTTGTGCCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	52759798	52660464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52660503_52744868_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ES_00062347	chrX	-	1360	10	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-102	84403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.772711719051	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCAGTTGTGCCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	52759900	52660464	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52660498_52744866_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ES_00062348	chrX	-	1245	1	FSM	ENSMUSG00000067924.5	ENSMUST00000088778.5	1232	1	0	-13	0	13	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTCTTACTTAGTATAGC	NA	False	NA	NA	False	AATAAA	-26	NA	52672375	52671130	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52671100_52672400
ES_00062349	chrX	-	1395	10	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-102	37655	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	433.772711719051	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTACAAAGTGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	52759900	52707212	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52707249_52744834_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ES_00062351	chrX	-	1039	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	-7	0	7	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAAATAGTCCTTTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	52799663	52785707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ES_00062352	chrX	-	991	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	-7	0	7	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAAATAGTCCTTTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	52799663	52785707	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ES_00062354	chrX	-	210	1	FSM	ENSMUSG00000081119.2	ENSMUST00000120892.2	236	1	-71	97	-71	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	298	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGACCAGTGAGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	52976827	52976617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52976600_52976800
ES_00062355	chrX	-	624	1	FSM	ENSMUSG00000082253.4	ENSMUST00000120850.2	866	1	350	-108	350	108	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTTACACCTTTTAAGA	NA	False	NA	NA	False	AAAAAG	-21	NA	55201403	55200779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_55200800_55201400
ES_00062356	chrX	-	956	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	0	-5	0	5	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTGCAATGTTAATTAA	NA	False	NA	NA	False	AATAAA	-24	NA	55258241	55235181	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
ES_00062358	chrX	-	4336	4	FSM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	-98	-4	-98	4	multi-exon	FALSE	canonical	3	129	junction_2	4.64279609239471	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTTGGTAGTGGGTTT	NA	False	NA	-3	True	AATAAA	-18	NA	55643527	55630867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_55634664_55636437_55636542_55640749_55640803_55643144
ES_00062359	chrX	-	2383	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	-244	0	244	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTTTTTTTCCCCACCTA	NA	False	NA	57	True	NA	NA	NA	56438341	56428645	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
ES_00062360	chrX	-	2100	9	FSM	ENSMUSG00000031134.17	ENSMUST00000114726.8	2108	9	8	0	-8	0	multi-exon	FALSE	canonical	3	14	junction_8	24.9871842151132	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCTGAAGCTGCAAAC	NA	False	NA	-16	True	AATAAA	-15	NA	56438388	56431721	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437062_56438211
ES_00062361	chrX	-	2507	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	0	-8	0	8	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTGTGTTTATTATCC	NA	False	NA	NA	False	AATAAA	-33	NA	58179796	58107496	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
ES_00062362	chrX	-	1002	1	FSM	ENSMUSG00000046993.7	ENSMUST00000153890.2	1119	1	93	24	93	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGAACCTGAAGATCAA	NA	False	NA	NA	False	NA	NA	NA	59091496	59090494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_59090500_59091500
ES_00062363	chrX	-	3838	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	806	4	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTTCGTGTATTTGTT	NA	False	NA	2	True	AATAAA	-33	NA	59223643	59101311	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ES_00062364	chrX	-	4231	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	0	-4	0	4	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	2845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTTCGTGTATTTGTT	NA	False	NA	2	True	AATAAA	-33	NA	59224449	59101311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
ES_00062366	chrX	-	5951	29	FSM	ENSMUSG00000062949.14	ENSMUST00000033480.13	5939	29	0	-12	0	9	multi-exon	FALSE	canonical	3	14	junction_1	18.7130588474619	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGAGTGTCTTGTTTTTAA	NA	False	NA	2	True	AATAAA	-23	NA	59449172	59268640	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_59271154_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
ES_00062367	chrX	-	5998	31	NNC	ENSMUSG00000062949.14	novel	6044	30	NA	NA	-848	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_30	19.6196047077633	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAATGGGTATTCGAGTG	NA	False	NA	-10	True	AATAAA	-11	NA	59450020	59268652	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995_59449068_59449961
ES_00062369	chrX	-	341	1	FSM	ENSMUSG00000081729.2	ENSMUST00000119602.2	1933	1	1359	233	1359	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGACCGGTTGACTGCT	NA	False	NA	NA	False	NA	NA	NA	59621125	59620784	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_59620800_59621100
ES_00062370	chrX	-	2115	1	FSM	ENSMUSG00000045179.10	ENSMUST00000135107.4	2065	1	-52	2	-52	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTGGAGTCCTGATAAT	NA	False	NA	-2	True	AATAAA	-13	NA	59937088	59934973	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_59935000_59937100
ES_00062372	chrX	-	642	3	FSM	ENSMUSG00000085757.8	ENSMUST00000129479.2	747	3	112	-7	112	7	multi-exon	FALSE	canonical	3	22	junction_2	17.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTTGATTTTTTTCTC	NA	False	NA	NA	False	AATAAA	-32	NA	61570505	61554137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_61554605_61558040_61558144_61570433
ES_00062374	chrX	-	431	1	FSM	ENSMUSG00000081603.2	ENSMUST00000118047.2	411	1	0	-20	0	20	mono-exon	FALSE	NA	NA	NA	NA	NA	395	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTTGGGGTATCTCT	NA	False	NA	NA	False	AAGAAA	-17	NA	65822458	65822027	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_65822000_65822500
ES_00062375	chrX	-	1572	8	FSM	ENSMUSG00000079578.2	ENSMUST00000114675.2	782	8	-77	-713	-77	713	multi-exon	FALSE	canonical	3	53	junction_5	5.823947745897	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATAATTGAAATTATCAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	66737245	66725792	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059
ES_00062378	chrX	-	4972	9	FSM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	1	-1	1	1	multi-exon	TRUE	canonical	3	25	junction_4	5.15842757049084	29253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGGGTTCTTAATGTT	NA	False	NA	63	True	AATAAA	-21	NA	69408689	69386673	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582_69406761_69407407_69407545_69408400
ES_00062380	chrX	-	2470	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	79.6773005455269	7486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520748	69503358	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510963_69513723_69513901_69520583
ES_00062381	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
ES_00062382	chrX	-	2355	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
ES_00062383	chrX	-	1307	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCTGAAGCCTCGTTT	NA	False	NA	NA	False	NA	NA	NA	69520786	69504564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
ES_00062385	chrX	-	3595	10	FSM	ENSMUSG00000035776.15	ENSMUST00000037391.12	3600	10	0	5	0	-5	multi-exon	FALSE	canonical	3	43	junction_4	6.51683479938452	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGTCCTGATGTGATC	NA	False	NA	-4	True	NA	NA	NA	70536455	70463670	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
ES_00062386	chrX	-	204	1	Intergenic	novelGene_4387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	679	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTATATCCCTGGAACCT	NA	False	NA	NA	False	AAAAAG	-1	NA	70589845	70589641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_70589600_70589800
ES_00062387	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	False	NA	-2	True	CATAAA	-17	NA	71962017	71957137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ES_00062389	chrX	-	2609	5	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2592	3	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGCGATGTTCTGC	NA	False	NA	3	True	AATAAA	-24	NA	72083301	72077583	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
ES_00062390	chrX	-	2785	1	FSM	ENSMUSG00000050424.10	ENSMUST00000051569.7	2785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACCTGAGTTCCTGAGCC	NA	False	NA	NA	False	NA	NA	NA	72080709	72077924	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72077900_72080700
ES_00062391	chrX	-	1162	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126084	72117950	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
ES_00062392	chrX	-	1232	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126130	72117950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
ES_00062394	chrX	-	1123	9	NIC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	103.290548938419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACTTGTTGGCATGAGT	NA	False	NA	NA	False	AATAAA	-13	NA	72126084	72117953	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125988
ES_00062396	chrX	-	1588	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	0	-4	0	4	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCATGAGTCATTTAATT	NA	False	NA	-1	True	AATAAA	-22	NA	72140623	72129894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
ES_00062397	chrX	-	3787	7	FSM	ENSMUSG00000057836.13	ENSMUST00000172709.8	3783	7	0	-4	0	4	multi-exon	FALSE	non_canonical	0	0	junction_5	560.301406982587	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCATGAGTCATTTAATT	NA	False	NA	-1	True	AATAAA	-22	NA	72140629	72129894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72136911_72137788_72137859_72138551_72138689_72140586
ES_00062398	chrX	-	1651	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	0	-6	0	4	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCATGAGTCATTTAATT	NA	False	NA	-1	True	AATAAA	-22	NA	72140701	72129894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
ES_00062401	chrX	-	1671	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	0	-21	0	21	multi-exon	TRUE	canonical	3	269	junction_2	77.2438306598009	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTTGGGGTTTTGTTGT	NA	False	NA	NA	False	ATTAAA	-35	NA	72161308	72151219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ES_00062402	chrX	-	1495	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	-21	0	21	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTTGGGGTTTTGTTGT	NA	False	NA	NA	False	ATTAAA	-35	NA	72161308	72151219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ES_00062403	chrX	-	1218	9	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	-355	combination_of_known_junctions	FALSE	canonical	3	112	junction_8	115.823141038395	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGTTAAAAAAAATCTTCT	NA	False	NA	NA	False	NA	NA	NA	72161308	72151595	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ES_00062404	chrX	-	1558	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	14	21	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTTGGGGTTTTGTTGT	NA	False	NA	NA	False	ATTAAA	-35	NA	72161294	72151219	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ES_00062407	chrX	-	2877	5	FSM	ENSMUSG00000071745.2	ENSMUST00000080324.4	2862	5	0	-15	0	15	multi-exon	FALSE	canonical	3	17	junction_4	17.5499287747842	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGACAGCTCTACTGAT	NA	False	NA	NA	False	AATAAA	-31	NA	72193056	72180822	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192967
ES_00062408	chrX	-	1626	10	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	0	86239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	515.324517197359	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAATGGGACTCATCTG	NA	False	NA	NA	False	NA	NA	NA	72308996	72211906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72211947_72298143_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ES_00062409	chrX	-	1622	10	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	0	86239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	515.324517197359	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAATGGGACTCATCTG	NA	False	NA	NA	False	NA	NA	NA	72308996	72211906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72211947_72298147_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ES_00062412	chrX	-	1069	9	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	-34	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	119.637407924946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACGTTTGATTTAATAAA	NA	False	NA	-42	True	NA	NA	NA	72286655	72277718	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286581
ES_00062416	chrX	-	1584	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308996	72298145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ES_00062417	chrX	-	1640	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	16	0	-16	multi-exon	TRUE	canonical	3	126	junction_7	127.059963698248	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAATGCTTAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	72336582	72326517	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ES_00062418	chrX	-	1489	8	NIC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	0	-68	combination_of_known_splicesites	FALSE	canonical	3	126	junction_6	133.486986295309	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACGCCTTAGTCATTCA	NA	False	NA	NA	False	NA	NA	NA	72336582	72326569	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ES_00062420	chrX	-	3743	2	Genic_Genomic	ENSMUSG00000096966.3	novel	2298	1	NA	NA	-3007	1256	multi-exon	FALSE	canonical	3	30	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCACCACTTCCTTGGGC	NA	False	NA	4	True	AATAAA	-22	NA	72445349	72438788	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_72442387_72445204
ES_00062424	chrX	-	1153	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	-114	-7	-114	7	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCGGACTACTGTTTGTG	NA	False	NA	-5	True	AATAAA	-24	NA	72502764	72480913	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ES_00062426	chrX	-	1647	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	-140	-15	-36	15	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTGTGGGATGAGCATG	NA	False	NA	13	True	AATAAA	-30	NA	72703470	72699584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
ES_00062427	chrX	-	1539	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	9	-16	9	15	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTGTGGGATGAGCATG	NA	False	NA	13	True	AATAAA	-30	NA	72703714	72699584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
ES_00062428	chrX	-	1219	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	0	0	0	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	1146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ES_00062429	chrX	-	1366	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-44	3	combination_of_known_junctions	FALSE	canonical	3	1072	junction_10	144.485579365652	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCTGTTCTTCCCTTACT	NA	False	NA	-25	True	AATAAA	-22	NA	72830547	72822565	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ES_00062430	chrX	-	1410	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-133	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	429.191286025241	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830636	72822568	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72830380
ES_00062431	chrX	-	1334	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	0	-3	0	3	multi-exon	TRUE	canonical	2	205	junction_10	445.162891535222	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCTGTTCTTCCCTTACT	NA	False	NA	-25	True	AATAAA	-22	NA	72830503	72822565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
ES_00062432	chrX	-	2083	10	FSM	ENSMUSG00000002010.18	ENSMUST00000156299.8	2080	10	0	-3	0	3	multi-exon	FALSE	canonical	3	1120	junction_7	119.009596044257	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCTGTTCTTCCCTTACT	NA	False	NA	-25	True	AATAAA	-22	NA	72830503	72822565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ES_00062433	chrX	-	1282	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	11	2	combination_of_known_junctions	FALSE	canonical	3	210	junction_11	355.941284971423	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTGTTCTTCCCTTAC	NA	False	NA	-26	True	AATAAA	-21	NA	72830217	72822566	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
ES_00062436	chrX	-	3972	8	FSM	ENSMUSG00000002006.13	ENSMUST00000002080.12	3970	8	0	-2	0	2	multi-exon	FALSE	canonical	1	1	junction_1	0.699854212223765	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACTTGTGTTCATTGC	NA	False	NA	-4	True	AATAAA	-24	NA	72868575	72836962	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72839527_72839706_72839818_72839981_72840084_72840435_72840499_72841799_72841899_72842363_72842455_72843439_72843694_72867887
ES_00062440	chrX	-	3846	18	NIC	ENSMUSG00000031389.18	novel	3208	21	NA	NA	0	0	intron_retention	FALSE	canonical	3	23	junction_4	9.19003522326461	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954936	72938137	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72950483_72954768
ES_00062441	chrX	-	993	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	0	-14	0	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGGGTATGCTTTTTTT	NA	False	NA	-1	True	AATAAA	-38	NA	72965494	72960478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ES_00062442	chrX	-	1053	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114389.10	1031	8	-20	-2	0	0	multi-exon	FALSE	canonical	3	794	junction_1	110.126457923125	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGGGTATGCTTTTTTT	NA	False	NA	-1	True	AATAAA	-38	NA	72965550	72960478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ES_00062443	chrX	-	1028	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	0	-66	0	66	multi-exon	FALSE	canonical	3	198	junction_1	315.02562254068	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTGAGCTCACAAGTCAA	NA	False	NA	65	True	NA	NA	NA	72965550	72960412	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ES_00062446	chrX	-	2156	5	FSM	ENSMUSG00000031388.15	ENSMUST00000143076.2	2156	5	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	30.5327692815441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATGAAAAACAAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	72965512	72961674	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ES_00062448	chrX	-	1318	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974398	72965726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
ES_00062449	chrX	-	1418	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974456	72965726	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
ES_00062450	chrX	-	3494	10	FSM	ENSMUSG00000031386.15	ENSMUST00000128136.8	3480	10	0	-14	0	11	multi-exon	FALSE	canonical	3	79	junction_7	130.872287194637	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGTGTGTCAAGAGTGTCT	NA	False	NA	1	True	ATTAAA	-34	NA	72992859	72986386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72991893_72992507_72992672_72992803
ES_00062451	chrX	-	8278	26	FSM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	0	-16	0	11	multi-exon	FALSE	canonical	3	79	junction_7	97.9245913956244	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGTGTGTCAAGAGTGTCT	NA	False	NA	1	True	ATTAAA	-34	NA	73009957	72986386	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72992025_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
ES_00062453	chrX	-	3333	12	ISM	ENSMUSG00000031392.19	ENSMUST00000033769.15	2890	15	969	-1055	0	-2	3prime_fragment	FALSE	canonical	3	23	junction_4	133.63945574654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCCTTTTAATTTTCT	NA	False	NA	-2	True	NA	NA	NA	73066550	73057521	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061506_73061624_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454
ES_00062454	chrX	-	3829	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114352.8	3825	14	0	-4	0	0	multi-exon	FALSE	canonical	3	90	junction_10	79.7365484565473	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTTTTAATTTTCTTT	NA	False	NA	0	True	NA	NA	NA	73067521	73057519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ES_00062455	chrX	-	3835	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114354.10	3835	14	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_10	56.8590076026845	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTTTTAATTTTCTTT	NA	False	NA	0	True	NA	NA	NA	73067524	73057519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ES_00062458	chrX	-	2826	15	NIC	ENSMUSG00000031392.19	novel	2890	15	NA	NA	-27	-6	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	128.894455320021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACAGAAGACTGCTAG	NA	False	NA	NA	False	NA	NA	NA	73067464	73058582	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_73059108_73060153_73060304_73060735_73061118_73061506_73061624_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ES_00062461	chrX	-	10538	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTCTGGGCTTTCAT	NA	False	NA	NA	False	GATAAA	-18	NA	73129275	73070197	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
ES_00062462	chrX	-	1739	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	51.5	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTAGAGTTTCGTGGC	NA	False	NA	NA	False	AATAAA	-22	NA	73129296	73078893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73080101_73080587_73080939_73129115
ES_00062465	chrX	-	8582	48	NNC	ENSMUSG00000031328.17	novel	8456	47	NA	NA	-95	31471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	144.416937017791	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGTTATTAAACTCAAT	NA	False	NA	NA	False	NA	NA	NA	73293521	73235595	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_73235627_73267066_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018_73284157_73284708_73284910_73284992_73285156_73285248_73285327_73285406_73285526_73286097_73286246_73286333_73286432_73286522_73286772_73289669_73290158_73293334
ES_00062468	chrX	-	8308	47	FSM	ENSMUSG00000031328.17	ENSMUST00000033699.13	8312	47	4	0	4	0	multi-exon	FALSE	canonical	3	112	junction_19	126.416146359915	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGTCCTATGTACAACC	NA	False	NA	-83	True	NA	NA	NA	73290157	73267146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276572_73276597_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018_73284157_73284708_73284910_73284992_73285156_73285248_73285327_73285406_73285526_73286097_73286246_73286333_73286432_73286522_73286772_73289669
ES_00062471	chrX	-	740	4	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	0	15609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	690.600222029118	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCCAGATAAGTAAGCTA	4536	False	NA	NA	False	NA	NA	NA	73397181	73379272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_73379305_73395776_73396105_73396479_73396609_73396930
ES_00062473	chrX	-	747	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	-1	0	0	multi-exon	FALSE	canonical	3	109	junction_1	662	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4536	False	NA	-18	True	AATAAA	-30	NA	73397181	73395766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73396105_73396450_73396609_73396930
ES_00062474	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_2	31	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73396105_73396479_73396609_73396930
ES_00062479	chrX	-	2003	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	14	6	14	-6	multi-exon	FALSE	canonical	3	11	junction_2	8.5	1184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGCAAGCTCGGGTCC	NA	False	NA	NA	False	AATAAA	-15	NA	73416941	73412828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73414618_73416219_73416289_73416796
ES_00062480	chrX	-	1910	8	NIC	ENSMUSG00000031399.16	novel	1899	9	NA	NA	10	7	intron_retention	FALSE	canonical	0	0	junction_6	47.9846914363831	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGGTGGTGTTGTCCC	NA	False	NA	1	True	AATAAA	-27	NA	73436851	73428317	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431413_73434596_73434711_73436280
ES_00062488	chrX	-	807	6	ISM	ENSMUSG00000081612.2	ENSMUST00000122043.2	711	8	29	1207	29	-1207	5prime_fragment	TRUE	canonical	3	61	junction_5	102.284700713254	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCAAACAGGGCCTTTCC	7109	False	NA	NA	False	NA	NA	NA	73873726	73868148	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_73868553_73869922_73870023_73870700_73870822_73871857_73871893_73873060_73873131_73873649
ES_00062491	chrX	-	2525	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGTCCAAGATTAT	NA	False	NA	NA	False	AATAAA	-17	NA	74174622	74153338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
ES_00062493	chrX	-	2564	7	NIC	ENSMUSG00000031200.17	novel	980	6	NA	NA	0	5598	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	21.2243309016379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460174	74448451	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_74448825_74453151_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
ES_00062494	chrX	-	996	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	-3	-1	-3	1	multi-exon	FALSE	canonical	3	61	junction_2	10	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTTTGTTACTAAATG	NA	False	NA	NA	False	AATAAA	-18	NA	74460174	74448450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74448825_74453151_74453220_74459620
ES_00062499	chrX	-	3377	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	13	11	13	-11	multi-exon	FALSE	canonical	3	5	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGAGATTCCATATGTGT	455	False	NA	NA	False	AGTAAA	-17	NA	74621824	74615662	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74618614_74621398
ES_00062500	chrX	-	3252	16	FSM	ENSMUSG00000016382.16	ENSMUST00000033547.14	3242	16	0	-10	0	1	multi-exon	FALSE	canonical	3	16	junction_15	76.3600826493936	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTTTGTTTTAATGAT	NA	False	NA	NA	False	AATAAA	-27	NA	74918180	74829258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74917943
ES_00062501	chrX	-	3150	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	0	-1	0	1	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTTTGTTTTAATGAT	NA	False	NA	NA	False	AATAAA	-27	NA	74918788	74829258	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
ES_00062502	chrX	-	641	1	FSM	ENSMUSG00000081164.2	ENSMUST00000121466.2	769	1	-26	154	-26	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAAGGAGTCCACCACCA	NA	False	NA	NA	False	AATACA	-26	NA	76801778	76801137	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_76801100_76801800
ES_00062503	chrX	-	4146	9	FSM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.21992765231236	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTATTTGGGAGAGGGA	NA	False	NA	NA	False	NA	NA	NA	76839884	76805016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76825643_76825908_76829733_76829903_76839153
ES_00062504	chrX	-	3900	4	FSM	ENSMUSG00000047996.17	ENSMUST00000114024.9	3900	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	4.64279609239471	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTGTTTTTCTTATATA	NA	False	NA	NA	False	AATAAA	-18	NA	77627502	77493218	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_77496779_77527356_77527518_77564376_77564428_77627374
ES_00062507	chrX	-	1963	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	-113	4	-113	-4	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTGTGCTCTCTTTTA	NA	False	NA	-4	True	AATAAA	-18	NA	78715154	78666840	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
ES_00062508	chrX	-	999	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAACCCTGGACCACCC	NA	False	NA	NA	False	NA	NA	NA	79238458	79237459	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_79237500_79238500
ES_00062510	chrX	-	831	1	FSM	ENSMUSG00000082319.4	ENSMUST00000118948.2	2347	1	-60	1576	-60	-1576	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTCAACGCCATCTCAAA	9663	False	NA	NA	False	NA	NA	NA	80866396	80865565	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_80865600_80866400
ES_00062511	chrX	-	721	3	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	63.5	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTCTGACATATCTCTG	1177	False	NA	NA	False	AATAAA	-20	NA	83486699	83445448	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_83445961_83473568_83473652_83486573
ES_00062512	chrX	-	1015	4	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	51.8737784327389	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAAGGGTTCTTCTTTGT	1161	False	NA	-11	True	AATAAA	-15	NA	83486715	83458138	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_83458730_83459197_83459397_83473568_83473652_83486573
ES_00062513	chrX	-	3131	3	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	63.5	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATCTGTGGTTTTTGCA	1161	False	NA	3	True	NA	NA	NA	83486715	83467131	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_83470038_83473568_83473652_83486573
ES_00062514	chrX	-	4229	20	FSM	ENSMUSG00000025059.17	ENSMUST00000142152.2	4229	20	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_16	53.7474343908722	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820230	84745542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84793217_84793302_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ES_00062515	chrX	-	4245	20	FSM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	13.2977827073068	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820243	84745542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ES_00062516	chrX	-	4340	19	FSM	ENSMUSG00000025059.17	ENSMUST00000026039.15	4340	19	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	33.6576812358314	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820425	84745542	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ES_00062517	chrX	-	1836	19	NIC	ENSMUSG00000025059.17	novel	778	8	NA	NA	38	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	37.4737768395085	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTGTTTCAGCAGTAT	NA	False	NA	NA	False	AATAAA	-17	NA	84820192	84750602	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_84750792_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ES_00062520	chrX	-	1524	4	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-46	-49653	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	15.5134350376268	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTGCTCCTGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	85348745	85343514	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_85343612_85343788_85344996_85347819_85347902_85348607
ES_00062522	chrX	-	1501	2	Genic_Genomic	ENSMUSG00000080069.3	novel	1023	1	NA	NA	-9143	380	multi-exon	FALSE	canonical	3	24	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTCAGATGTTT	NA	False	NA	NA	False	NA	NA	NA	85398594	85388048	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_85389457_85398501
ES_00062523	chrX	-	1023	1	FSM	ENSMUSG00000080069.3	ENSMUST00000116183.3	1023	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATATTAGGTAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	85389451	85388428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_85388400_85389500
ES_00062526	chrX	-	846	1	FSM	ENSMUSG00000097961.2	ENSMUST00000182943.2	842	1	-7	3	-7	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87803925	87803079	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_87803100_87803900
ES_00062528	chrX	-	1813	1	FSM	ENSMUSG00000067649.4	ENSMUST00000088137.3	1571	1	83	-325	83	3	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTTTACTAGTTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	91164294	91162481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_91162500_91164300
ES_00062529	chrX	-	5352	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	-6	0	6	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTTGTTTTGTTTTGT	4277	False	NA	4	True	AATAAA	-25	NA	92675761	92348366	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ES_00062530	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	False	NA	-2	True	ATTAAA	-33	NA	92875807	92808212	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
ES_00062532	chrX	-	6934	8	FSM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	0	-1	0	0	multi-exon	FALSE	canonical	3	21	junction_7	34.1317973719043	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGTGGAGTGTTGGCTA	NA	False	NA	-1	True	AATAAA	-22	NA	93167013	93118236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
ES_00062533	chrX	-	6672	8	NNC	ENSMUSG00000079509.11	novel	7002	9	NA	NA	-26923	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	39.1371215818727	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGTGGAGTGTTGGCTA	NA	False	NA	-1	True	AATAAA	-22	NA	93194231	93118236	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93194153
ES_00062534	chrX	-	881	4	FSM	ENSMUSG00000079509.11	ENSMUST00000113925.8	879	4	0	-2	0	2	multi-exon	FALSE	canonical	3	51	junction_3	30.6920185064456	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCCAGGTGTGATGAT	NA	False	NA	NA	False	ATTAAA	-30	NA	93166715	93141777	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93142459_93145896_93145987_93157801_93157870_93166673
ES_00062536	chrX	-	3647	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	0	0	0	0	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	-2	True	AATAAA	-21	NA	93256315	93232312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ES_00062538	chrX	-	2890	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	0	-6	0	4	multi-exon	FALSE	canonical	3	1240	junction_9	165.668493041908	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTTCTCATCTTTTGT	NA	False	NA	2	True	AATAAA	-25	NA	93585596	93579075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
ES_00062540	chrX	-	404	1	FSM	ENSMUSG00000081418.2	ENSMUST00000121899.2	700	1	353	-57	353	57	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAAGCACTCATTTTCT	NA	False	NA	NA	False	ATTAAA	-6	NA	93818930	93818526	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93818500_93818900
ES_00062542	chrX	-	4180	1	FSM	ENSMUSG00000071722.5	ENSMUST00000096367.5	4173	1	0	-7	0	7	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGACTTTTGTGTTTTC	NA	False	NA	NA	False	AATAAA	-32	NA	94070288	94066108	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94066100_94070300
ES_00062543	chrX	-	8490	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	6	0	6	0	multi-exon	FALSE	canonical	3	18	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAAGTGTTTTCTTGTTGT	NA	False	NA	NA	False	AATAAA	-30	NA	94488472	94463923	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94472205_94488263
ES_00062544	chrX	-	2156	5	FSM	ENSMUSG00000035062.14	ENSMUST00000044382.7	2219	5	78	-15	-23	9	multi-exon	FALSE	canonical	3	32	junction_1	3.76662979332984	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCATTCTGTGTGCTGGA	959	False	NA	NA	False	AATAAA	-30	NA	94702037	94682789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94684258_94685769_94685933_94686913_94687087_94688912_94689085_94701857
ES_00062547	chrX	-	2458	14	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	255.18003854339	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000492	94978940	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_94979256_94980977_94981129_94983904_94984228_94984272_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
ES_00062549	chrX	-	2581	14	FSM	ENSMUSG00000057421.13	ENSMUST00000113864.3	2581	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	331.353544718678	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
ES_00062550	chrX	-	862	3	FSM	ENSMUSG00000057421.13	ENSMUST00000137659.2	862	3	0	0	0	0	multi-exon	FALSE	canonical	3	852	junction_1	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCACTGGCAAAGCTCCG	7951	False	NA	NA	False	NA	NA	NA	94991061	94984429	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94984555_94990016_94990165_94990472
ES_00062554	chrX	-	1972	10	FSM	ENSMUSG00000045802.14	ENSMUST00000179832.8	1972	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	5.63936779575534	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTATTCAAAAATAAATTTA	NA	False	NA	NA	False	AAAAAG	-26	NA	95400846	95350472	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_95351419_95356633_95356734_95358396_95358613_95363891_95364023_95364209_95364292_95365602_95365665_95365900_95365977_95373119_95373245_95382022_95382151_95400740
ES_00062555	chrX	-	746	4	ISM	ENSMUSG00000045802.14	ENSMUST00000059003.5	1479	12	-135	21841	-135	-8687	5prime_fragment	FALSE	canonical	3	25	junction_2	5.31245915016974	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAATTGCTACTATGAGC	NA	False	NA	NA	False	ATTAAA	-29	NA	95411660	95372969	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_95373245_95382022_95382151_95400740_95400850_95411426
ES_00062556	chrX	-	6038	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	66	-3951	0	0	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTGTTTATTCCTC	NA	False	NA	-23	True	AATAAA	-14	NA	96420756	96377445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ES_00062558	chrX	-	7169	25	FSM	ENSMUSG00000031214.14	ENSMUST00000033560.9	7170	25	0	1	0	-1	multi-exon	TRUE	canonical	1	4	junction_23	4.90959944055181	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTTGTCTGATCTAATC	NA	False	NA	NA	False	NA	NA	NA	97934591	97597883	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97753683_97753785_97755946_97756077_97757712_97757818_97769610_97769722_97775970_97776073_97807310_97807383_97824561_97824624_97846690_97846787_97933687_97933861_97933986
ES_00062559	chrX	-	2125	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113790.8	2108	3	0	-17	0	13	multi-exon	FALSE	canonical	3	92	junction_1	143.5	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTAACTCGGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	98514293	98509326	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_98511189_98511728_98511921_98514222
ES_00062560	chrX	-	2666	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAATAAATAAAT	NA	False	NA	NA	False	AAAACA	-20	NA	98514341	98509373	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_98511921_98514222
ES_00062561	chrX	-	2563	2	FSM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514298	98509719	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_98512207_98514222
ES_00062563	chrX	-	1362	6	FSM	ENSMUSG00000015668.14	ENSMUST00000144643.8	1497	6	135	0	132	0	multi-exon	FALSE	canonical	3	516	junction_1	29.9506260368627	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669409	99666488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893
ES_00062564	chrX	-	1629	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	0	-3	0	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99670174	99666488	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ES_00062565	chrX	-	1063	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	0	-22	0	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
ES_00062567	chrX	-	2591	25	FSM	ENSMUSG00000009670.12	ENSMUST00000113716.3	2591	25	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_1	14.9015286315047	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGCTAAGTTTAACAT	NA	False	NA	NA	False	NA	NA	NA	100103273	99921487	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_99921832_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
ES_00062568	chrX	-	2453	13	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	0	70	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_12	505.338500413337	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	TATAAA	-29	NA	100128978	100122745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128566_100128877
ES_00062569	chrX	-	2505	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	-53	-81	0	70	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	TATAAA	-29	NA	100129011	100122745	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
ES_00062570	chrX	-	2792	11	FSM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	0	-75	0	75	multi-exon	FALSE	canonical	3	1250	junction_10	85.0282306060758	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTGTGTCTTTTTCTC	NA	False	NA	NA	False	TATAAA	-34	NA	100129011	100122740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00062571	chrX	-	2739	14	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	9	70	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_13	513.660998423839	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	TATAAA	-29	NA	100129617	100122745	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193_100129261_100129344
ES_00062572	chrX	-	2397	11	NIC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	0	66	intron_retention	FALSE	canonical	3	1250	junction_10	83.9895231561651	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGAAGTGTCTTGTGT	NA	False	NA	NA	False	TATAAA	-25	NA	100128958	100122749	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00062573	chrX	-	2299	12	FSM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	20	-87	0	75	multi-exon	FALSE	canonical	3	1250	junction_11	82.5987012884915	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTGTGTCTTTTTCTC	NA	False	NA	NA	False	TATAAA	-34	NA	100128958	100122740	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00062576	chrX	-	988	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	14	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	2779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ES_00062577	chrX	-	2415	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
ES_00062578	chrX	-	2371	5	NNC	ENSMUSG00000046032.17	novel	2415	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	40	junction_1	181.166187518532	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100256360_100256403_100257471_100258006_100258132_100259088_100259185_100265867
ES_00062581	chrX	-	5471	26	NNC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	0	11586	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.0129038914931	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGGCTGGTGAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	100463404	100436403	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100436429_100447991_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
ES_00062582	chrX	-	5500	25	FSM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	62	2	8	-2	multi-exon	FALSE	canonical	3	54	junction_18	23.7530334320108	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTGCTTTCTCTGGGG	NA	False	NA	-4	True	AATAAA	-12	NA	100463458	100447991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
ES_00062583	chrX	-	5459	25	NIC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	3	54	junction_18	23.4366388730694	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTGCTTTCTCTGGGG	NA	False	NA	-4	True	AATAAA	-12	NA	100463411	100447991	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ES_00062585	chrX	-	1860	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	0	-1	0	0	multi-exon	FALSE	canonical	3	84	junction_4	20.0637871688163	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCAGCCTCTCCTTCCCC	NA	False	NA	0	True	NA	NA	NA	100463415	100458534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ES_00062586	chrX	-	1838	7	ISM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	117	10549	1	0	5prime_fragment	FALSE	canonical	3	74	junction_4	23.7065391822594	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463403	100458538	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
ES_00062588	chrX	-	200	2	Antisense	novelGene_ENSMUSG00000034160.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	846	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAACAAAGCTGGGCGG	NA	False	NA	NA	False	NA	NA	NA	100731031	100714204	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_100714352_100730978
ES_00062589	chrX	-	306	1	FSM	ENSMUSG00000082729.4	ENSMUST00000121259.2	306	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAACATCACCTTTTGAT	NA	False	NA	NA	False	AATGAA	-37	NA	100735456	100735150	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100735200_100735500
ES_00062590	chrX	-	1756	1	FSM	ENSMUSG00000084197.2	ENSMUST00000122027.2	526	1	-495	-735	-495	735	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAGGGCTTCAGGAGGG	NA	False	NA	NA	False	AATAAA	-33	NA	100753662	100751906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100751900_100753700
ES_00062591	chrX	-	2289	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	0	-298	0	3	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGGCTCTGAGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	100838029	100833655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ES_00062592	chrX	-	1446	6	NIC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	-326	-6	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACAGCTGTACTTTTGC	NA	False	NA	NA	False	NA	NA	NA	100837240	100833959	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ES_00062593	chrX	-	1352	7	NNC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	-430	-9	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	110.674322024377	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTCACAGCTGTACTTT	NA	False	NA	NA	False	NA	NA	NA	100837344	100833962	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100834130_100834212_100834255_100834449_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ES_00062595	chrX	-	5305	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	0	-3	0	3	multi-exon	FALSE	canonical	3	249	junction_1	0	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCCGGTTTGTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	101200697	101185318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101190440_101200513
ES_00062596	chrX	-	1615	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	-640	0	640	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	3452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCAGCAGGATGGGCTT	NA	False	NA	NA	False	AATAAA	-26	NA	101233000	101227906	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
ES_00062597	chrX	-	1112	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	0	-22	0	-1	multi-exon	FALSE	canonical	3	50	junction_2	78.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGCCTGGGTGTGTTCT	NA	False	NA	-1	True	AATAAA	-19	NA	101295458	101290987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101291615_101292168_101292294_101295098
ES_00062600	chrX	-	1300	10	NNC	ENSMUSG00000067567.13	novel	686	7	NA	NA	12	47575	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	19.2700112437262	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAGAATACAATTACTAG	NA	False	NA	NA	False	AATAAA	-14	NA	101548740	101401677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_101401903_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
ES_00062605	chrX	-	1348	1	FSM	ENSMUSG00000080845.2	ENSMUST00000120192.2	1348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCGTCACCCTGCAGCC	NA	False	NA	NA	False	NA	NA	NA	101769355	101768007	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101768000_101769400
ES_00062607	chrX	-	1619	9	FSM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	0	-8	0	8	multi-exon	FALSE	canonical	0	0	junction_7	64.8072864344743	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTCTTCACTGTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	101898222	101891236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739_101897930_101898030
ES_00062610	chrX	-	2601	2	NNC	ENSMUSG00000048949.9	novel	2199	2	NA	NA	-119	280	at_least_one_novel_splicesite	FALSE	non_canonical	3	228	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATACAGGTTATCGCAGG	NA	False	NA	NA	False	NA	NA	NA	102209132	102206435	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_102208081_102208176
ES_00062611	chrX	-	3290	1	FSM	ENSMUSG00000082229.2	ENSMUST00000121720.2	2465	1	-826	1	-826	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGGTGTTAAATGTTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	102231072	102227782	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_102227800_102231100
ES_00062612	chrX	-	751	4	FSM	ENSMUSG00000031325.16	ENSMUST00000127012.9	685	4	-66	0	-66	0	multi-exon	FALSE	canonical	3	19	junction_2	0.816496580927726	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATCTAAGAAGCTACTAAA	NA	False	NA	NA	False	GATAAA	-14	NA	102355454	102273633	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_102273781_102276407_102276548_102277627_102277876_102355238
ES_00062613	chrX	-	373	3	FSM	ENSMUSG00000031325.16	ENSMUST00000182224.8	373	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAAAATCCCGCAGTCAT	NA	False	NA	NA	False	AATGAA	-44	NA	102296653	102273699	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_102273781_102277627_102277876_102296609
ES_00062614	chrX	-	200	1	Intergenic	novelGene_4441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAATTCTTTTTAAACA	NA	False	NA	NA	False	NA	NA	NA	102431261	102431061	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_102431100_102431300
ES_00062616	chrX	-	445	1	FSM	ENSMUSG00002076282.1	ENSMUST00020182793.1	126	1	120	-439	120	439	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCACCAGATCTCATTAC	1897	False	NA	NA	False	NA	NA	NA	102513282	102512837	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_102512800_102513300
ES_00062617	chrX	-	250	2	NNC	ENSMUSG00000086370.10	novel	1752	12	NA	NA	-16858	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTACTTGGCTGCTGCTA	NA	False	NA	NA	False	NA	NA	NA	102684254	102631307	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_102631350_102684046
ES_00062619	chrX	-	7433	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	0	-4	0	4	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTTTTCATCCTTGGGG	2373	False	NA	3	True	AATAAA	-20	NA	103024890	103000764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
ES_00062620	chrX	-	7443	5	FSM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	0	-4	0	4	multi-exon	FALSE	canonical	3	84	junction_4	53.7261575026541	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTTTTCATCCTTGGGG	2373	False	NA	3	True	AATAAA	-20	NA	103024890	103000764	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024668
ES_00062621	chrX	-	1761	2	FSM	ENSMUSG00000056537.12	ENSMUST00000135101.2	1762	2	1	0	1	0	multi-exon	FALSE	canonical	3	84	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAGTAAAAAAAATA	2374	False	NA	NA	False	NA	NA	NA	103024889	103021400	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103022941_103024668
ES_00062623	chrX	-	5931	4	NNC	ENSMUSG00000046449.16	novel	5211	4	NA	NA	-33	2753	intron_retention	FALSE	canonical	1	3	junction_3	12.1928941054479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTATGAGTATAATGTG	NA	False	NA	NA	False	AATAAA	-6	NA	103244824	103124566	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_103124709_103126759_103131837_103132486_103132613_103244238
ES_00062625	chrX	-	5667	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTCTGGTGGAAATCA	9861	False	NA	-2	True	AATAAA	-24	NA	103457452	103324262	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
ES_00062627	chrX	-	3254	1	FSM	ENSMUSG00000083327.2	ENSMUST00000120233.2	2406	1	-272	-576	-272	576	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAACAAATAAAAAAGCCA	NA	False	NA	NA	False	AATAAA	-32	NA	103392112	103388858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103388900_103392100
ES_00062630	chrX	-	713	6	FSM	ENSMUSG00000087174.8	ENSMUST00000144366.8	709	6	0	-4	0	4	multi-exon	FALSE	canonical	3	37	junction_3	33.8904116233486	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGATTTACATGTAGTTA	NA	False	NA	1	True	AATAAA	-21	NA	104113661	104087404	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112176_104112235_104113216_104113282_104113605
ES_00062631	chrX	-	1320	6	FSM	ENSMUSG00000087174.8	ENSMUST00000140954.8	3287	6	5	1962	5	-92	multi-exon	FALSE	canonical	3	59	junction_2	25.9183332797462	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTACTTTGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	104113725	104086968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ES_00062632	chrX	-	1218	5	FSM	ENSMUSG00000087174.8	ENSMUST00000138460.8	3732	5	5	2509	5	-92	multi-exon	FALSE	canonical	3	29	junction_1	38.5940409908058	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTACTTTGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	104113725	104086968	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ES_00062633	chrX	-	619	5	NIC	ENSMUSG00000087174.8	novel	709	6	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	44.3790491110389	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113673	104087408	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104087718_104110364_104110484_104112176_104112235_104113216_104113282_104113605
ES_00062636	chrX	-	345	1	FSM	ENSMUSG00000085791.5	ENSMUST00000122265.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	104322587	104322242	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104322200_104322600
ES_00062637	chrX	-	280	1	FSM	ENSMUSG00000063442.6	ENSMUST00000071515.3	387	1	155	-48	155	48	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCAGGCTGTTGGGC	NA	False	NA	NA	False	AATAAA	-22	NA	104768965	104768685	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104768700_104769000
ES_00062638	chrX	-	10543	36	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_35	53.1071001056606	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104972951	104841220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104955075_104955261_104972564
ES_00062639	chrX	-	10275	35	FSM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_34	46.470253163349	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104973009	104841220	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
ES_00062643	chrX	-	1838	6	FSM	ENSMUSG00000031229.17	ENSMUST00000123174.2	1838	6	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_3	21.4979068748564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGATTGTTTTCCTTT	NA	False	NA	-6	True	AATAAA	-18	NA	104918870	104895042	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165
ES_00062647	chrX	-	3124	2	FSM	ENSMUSG00000031229.17	ENSMUST00000200471.2	3124	2	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGTTGAAGCATTTAAT	NA	False	NA	-1	True	AATAAA	-16	NA	104918911	104909151	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104911530_104918165
ES_00062648	chrX	-	6427	10	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	78.1595392786249	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTGTTGAAGCATTTA	NA	False	NA	-3	True	AATAAA	-14	NA	104972965	104909153	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104911530_104918165_104921180_104921972_104922041_104923514_104923622_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
ES_00062649	chrX	-	6101	10	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	15	-5	combination_of_known_junctions	FALSE	canonical	3	34	junction_9	72.4906124190497	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTCTTGTTGAAGCAT	NA	False	NA	-6	True	AATAAA	-11	NA	104972168	104909156	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972093
ES_00062652	chrX	-	4513	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	16	-5	16	5	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTTTATTCTCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	105055489	105011684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ES_00062653	chrX	-	4120	11	FSM	ENSMUSG00000031232.18	ENSMUST00000033583.14	4115	11	0	-5	0	5	multi-exon	FALSE	canonical	3	21	junction_1	64.6371410258839	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTTTATTCTCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	105055505	105011684	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ES_00062655	chrX	-	2554	7	FSM	ENSMUSG00000047242.15	ENSMUST00000055497.15	2633	7	81	-2	81	2	multi-exon	FALSE	canonical	3	7	junction_1	4.34613493680177	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAACCTTTCATTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	105263426	105250486	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_105252264_105253312_105253424_105259732_105259803_105261702_105261838_105261915_105262053_105262501_105262584_105263184
ES_00062662	chrX	-	7712	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	0	-3577	0	3576	multi-exon	FALSE	canonical	3	139	junction_4	54.455987232393	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTTGACCTTGCTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	110372892	110294312	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ES_00062663	chrX	-	7854	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-51	3576	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	71.6464486948656	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTTGACCTTGCTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	110373203	110294312	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
ES_00062664	chrX	-	7866	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-51	3576	combination_of_known_splicesites	FALSE	canonical	3	17	junction_23	77.9498166325199	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTTGACCTTGCTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	110373203	110294312	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372796_110372967
ES_00062665	chrX	-	4151	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110372892	110297888	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ES_00062666	chrX	-	4240	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110373150	110297888	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
ES_00062668	chrX	-	4879	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	0	-11	0	11	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTATTTTTTTATATTT	NA	False	NA	2	True	AATAAA	-27	NA	112095214	111950278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
ES_00062674	chrX	-	5180	1	Intergenic	novelGene_4461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGAAAGCTTCATGGCC	NA	False	NA	NA	False	AAAAAG	-1	NA	116231725	116226545	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_116226500_116231700
ES_00062677	chrX	-	2851	1	FSM	ENSMUSG00000055733.7	ENSMUST00000079490.6	2837	1	-7	-7	-7	7	mono-exon	FALSE	NA	NA	NA	NA	NA	303	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACCATTTTCTTTTAATT	NA	False	NA	NA	False	AATAAA	-18	NA	121307105	121304254	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_121304300_121307100
ES_00062682	chrX	-	10224	5	FSM	ENSMUSG00000051323.17	ENSMUST00000060309.10	7035	5	-3166	-23	-72	4	multi-exon	FALSE	canonical	3	7	junction_2	7.29297607290741	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGAGAGTGTTTTCTTG	NA	False	NA	NA	False	ATTAAA	-41	NA	132589808	132483604	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_132489327_132526017_132526191_132533643_132533703_132581829_132582158_132585866
ES_00062683	chrX	-	8406	5	FSM	ENSMUSG00000051323.17	ENSMUST00000167944.8	8407	5	0	1	0	-1	multi-exon	FALSE	canonical	3	12	junction_2	5.78791845139511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTTTGGTGAAATGTG	NA	False	NA	NA	False	ATTAAA	-21	NA	132588013	132483624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_132489327_132526017_132526188_132533643_132533703_132581829_132582158_132585866
ES_00062685	chrX	-	3114	13	FSM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	5	0	5	0	multi-exon	FALSE	canonical	1	13	junction_4	11.7686022959398	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATCTCTAGTCCATG	NA	False	NA	-5	True	AATAAA	-23	NA	133177726	133123843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
ES_00062686	chrX	-	1797	4	NIC	ENSMUSG00000067369.13	novel	4099	12	NA	NA	5	5	intron_retention	FALSE	canonical	3	48	junction_1	4.32049379893857	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTCCGCATTGTCAT	NA	False	NA	-2	True	AGTAAA	-19	NA	133177726	133163231	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_133164611_133167009_133167065_133168079_133168311_133177594
ES_00062687	chrX	-	1949	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	-17	1	-17	-1	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAACGTCTCTAATTTC	NA	False	NA	NA	False	NA	NA	NA	133377256	133360867	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
ES_00062688	chrX	-	1421	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133442614	133438004	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133439017_133442205
ES_00062694	chrX	-	2391	22	FSM	ENSMUSG00000009941.11	ENSMUST00000010085.4	2393	22	0	2	0	-2	multi-exon	TRUE	canonical	3	19	junction_3	6.66632652193486	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTATGTCTTGAAGTG	NA	False	NA	-4	True	AATAAA	-16	NA	133865503	133845278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133845538_133845640_133845702_133850435_133850634_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
ES_00062695	chrX	-	2373	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	0	2	0	-2	multi-exon	FALSE	canonical	3	15	junction_3	7.21770310384392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTATGTCTTGAAGTG	NA	False	NA	-4	True	AATAAA	-16	NA	133865503	133845278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
ES_00062696	chrX	-	1386	3	FSM	ENSMUSG00000081146.2	ENSMUST00000120075.2	1386	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	1.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCACAGTCCAACACATT	NA	False	NA	NA	False	NA	NA	NA	134023733	134020709	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_134021224_134022418_134023001_134023443
ES_00062700	chrX	-	461	7	FSM	ENSMUSG00000031410.15	ENSMUST00000127202.2	792	7	331	0	331	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGTTTGTGGGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	134486551	134485128	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_134485145_134485235_134485352_134485452_134485512_134485645_134485754_134485889_134485946_134486029_134486099_134486514
ES_00062701	chrX	-	1780	10	FSM	ENSMUSG00000058252.7	ENSMUST00000078605.7	1776	10	-4	0	-4	0	multi-exon	FALSE	canonical	1	3	junction_3	2.8588178511708	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGTGTCTTTTATGATG	6967	False	NA	NA	False	AATAAA	-20	NA	134594543	134555446	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_134555875_134558185_134558350_134559471_134559654_134559749_134559968_134561192_134561330_134565131_134565353_134566154_134566276_134570064_134570177_134593910_134594046_134594481
ES_00062702	chrX	-	505	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	32	7	32	-7	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGGTTTTGGGCTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	134625978	134619422	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
ES_00062703	chrX	-	886	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	18	-1	18	1	multi-exon	FALSE	canonical	3	901	junction_2	34	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGTAGTTCTTTAAAGGC	4174	False	NA	1	True	AATAAA	-19	NA	134968967	134967311	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_134967957_134968348_134968422_134968799
ES_00062705	chrX	-	2988	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_19	14.4216288782296	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134985972	134972847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134985845
ES_00062706	chrX	-	3058	21	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_19	15.6232999075099	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134985972	134972847	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
ES_00062708	chrX	-	2358	4	FSM	ENSMUSG00000051579.11	ENSMUST00000163584.8	2358	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	323.806869737022	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTTCCCAGAACAGCTAC	NA	False	NA	NA	False	NA	NA	NA	135073000	135069732	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135071799_135072168_135072271_135072384_135072455_135072880
ES_00062709	chrX	-	1196	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	54	0	-37	0	multi-exon	FALSE	canonical	3	703	junction_2	29	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135073037	135070829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135071799_135072384_135072455_135072880
ES_00062710	chrX	-	872	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	0	-6	0	6	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	1397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCATCTTTTCTTTATA	NA	False	NA	4	True	AATAAA	-23	NA	135116262	135114714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135115333_135115652_135115730_135116085
ES_00062711	chrX	-	725	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	0	-7	0	6	multi-exon	FALSE	canonical	3	111	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCATCTTTTCTTTATA	NA	False	NA	4	True	AATAAA	-23	NA	135116192	135114714	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135115333_135116085
ES_00062712	chrX	-	754	3	FSM	ENSMUSG00000050071.9	ENSMUST00000113118.2	754	3	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	2702.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTATTGTGAACCTA	NA	False	NA	-43	True	NA	NA	NA	135116233	135114761	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135115333_135115694_135115730_135116085
ES_00062714	chrX	-	1871	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	-12	0	1	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTGTTCTTTTTATGT	NA	False	NA	NA	False	AATAAA	-35	NA	135642101	135633689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ES_00062715	chrX	-	1796	3	FSM	ENSMUSG00000031422.17	ENSMUST00000169418.8	1782	3	0	-14	0	3	multi-exon	FALSE	canonical	3	16	junction_1	1462	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTTCTTTTTATGTTC	NA	False	NA	NA	False	AATAAA	-37	NA	135642101	135633687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135635251_135640553_135640644_135641958
ES_00062716	chrX	-	1997	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	0	-1	0	1	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTGTTCTTTTTATGT	NA	False	NA	NA	False	AATAAA	-35	NA	135642410	135633689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
ES_00062717	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000164609.8	1811	4	0	-14	0	3	multi-exon	FALSE	canonical	3	42	junction_3	1452.09664508485	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTTCTTTTTATGTTC	NA	False	NA	NA	False	AATAAA	-37	NA	135643667	135633687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
ES_00062718	chrX	-	1826	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	-1	0	1	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTGTTCTTTTTATGT	NA	False	NA	NA	False	AATAAA	-35	NA	135644439	135633689	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
ES_00062720	chrX	-	808	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	0	8	0	-8	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAACCTCTTGAGCAG	NA	False	NA	NA	False	AATAAA	-9	NA	135877618	135855744	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
ES_00062721	chrX	-	447	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	3	0	3	0	multi-exon	FALSE	canonical	3	182	junction_2	19	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858771	135856013	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135856232_135857483_135857589_135858647
ES_00062722	chrX	-	439	3	FSM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	50	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877623	135874770	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135874989_135876146_135876252_135877507
ES_00062726	chrX	-	1497	5	FSM	ENSMUSG00000023443.14	ENSMUST00000074698.3	1600	5	103	0	-52	0	multi-exon	FALSE	canonical	3	9	junction_4	18.0052075800308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTTTGAGAGTTATA	NA	False	NA	-1	True	AATAAA	-18	NA	136020972	136016145	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319_136020446_136020692
ES_00062727	chrX	-	773	4	NNC	ENSMUSG00000086807.9	novel	712	4	NA	NA	-24	37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.18241233033047	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAATCCCAGCACTCGGG	NA	False	NA	NA	False	NA	NA	NA	138258511	138248202	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_138248640_138255752_138255851_138257038_138257123_138258357
ES_00062728	chrX	-	1076	3	Intergenic	novelGene_4486	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_1	13	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTAGAGTTTTTATGTGA	NA	False	NA	NA	False	AATAAA	-28	NA	138300902	138296082	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_138296298_138297305_138297544_138300279
ES_00062729	chrX	-	811	4	FSM	ENSMUSG00000072945.4	ENSMUST00000101217.4	811	4	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	2.16024689946929	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTCTTGTGCCAACAGT	NA	False	NA	NA	False	NA	NA	NA	138683102	138680297	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138680762_138681239_138681305_138681861_138681938_138682896
ES_00062731	chrX	-	3862	17	FSM	ENSMUSG00000031434.16	ENSMUST00000087401.12	3862	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	16.8851821133205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTAGGCTTGAATTTGGG	NA	False	NA	-12	True	AATAAA	-17	NA	138772426	138722652	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
ES_00062735	chrX	-	5670	7	NNC	ENSMUSG00000031433.16	novel	2787	7	NA	NA	699	1842	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_6	11.4163625263625	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGATTTGGAAAGAGATT	NA	False	NA	NA	False	AATAAA	-18	NA	138898586	138842279	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_138846653_138855655_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860_138896146_138898524
ES_00062736	chrX	-	5497	7	FSM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	-5	-2705	1	1842	multi-exon	FALSE	canonical	3	17	junction_1	6.26276474268531	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGATTTGGAAAGAGATT	NA	False	NA	NA	False	AATAAA	-18	NA	138899305	138842279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138846653_138855655_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
ES_00062739	chrX	-	2049	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	0	-53	0	53	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTCATGTTACAGAAAAAT	NA	False	NA	44	True	CATAAA	-11	NA	138963317	138907500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
ES_00062740	chrX	-	783	8	FSM	ENSMUSG00000072944.12	ENSMUST00000154385.8	783	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	181.265168260452	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCATATGGAATCCCTGC	NA	False	NA	NA	False	NA	NA	NA	138963042	138922810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
ES_00062742	chrX	-	1790	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443417	139440276	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_139441857_139442853_139442906_139443259
ES_00062746	chrX	-	535	2	Intergenic	novelGene_4487	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	139537388	139536653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_139536980_139537179
ES_00062747	chrX	-	323	2	Intergenic	novelGene_4488	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	139537388	139536653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_139536768_139537179
ES_00062749	chrX	-	1393	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	8	-11	8	11	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCATTCAAGTCAGTTAC	NA	False	NA	3	True	AATAAA	-22	NA	139857469	139849166	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
ES_00062750	chrX	-	4963	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112904.8	4959	16	0	-4	0	4	multi-exon	TRUE	canonical	3	35	junction_14	37.5140862432589	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTTTCTTATATGT	NA	False	NA	1	True	AATAAA	-22	NA	141173500	141100984	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134615_141143382_141143433_141173300
ES_00062751	chrX	-	5280	16	FSM	ENSMUSG00000031278.13	ENSMUST00000033634.5	5280	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_14	18.9168942717585	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173531	141100988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134905_141143382_141143433_141173300
ES_00062752	chrX	-	5437	6	FSM	ENSMUSG00000042225.4	ENSMUST00000041317.3	5437	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	6.04648658313239	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGTTTTAGATTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	141749724	141634141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_141638644_141640471_141640569_141641876_141641968_141661105_141661221_141695168_141695280_141749203
ES_00062753	chrX	-	3560	13	FSM	ENSMUSG00000067276.6	ENSMUST00000087316.6	3561	13	0	1	0	-1	multi-exon	FALSE	canonical	3	10	junction_3	5.06348584365444	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTCTTGACTAGTTAATG	NA	False	NA	NA	False	AATAAA	-21	NA	142610410	142585227	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_142586823_142587352_142587490_142587670_142587793_142588390_142588594_142588758_142588882_142590241_142590429_142590522_142590601_142590836_142591031_142591613_142591807_142592290_142592500_142593840_142593973_142603291_142603473_142610204
ES_00062754	chrX	-	2573	1	FSM	ENSMUSG00000083200.2	ENSMUST00000120163.2	2608	1	78	-43	78	43	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGAAGACACCTTGAGA	NA	False	NA	NA	False	NA	NA	NA	143071251	143068678	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_143068700_143071300
ES_00062755	chrX	-	807	1	FSM	ENSMUSG00000082106.4	ENSMUST00000117991.2	1127	1	112	208	112	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGGATAAAGCTGAAACTA	NA	False	NA	NA	False	GGGGCT	-1	NA	143339221	143338414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_143338400_143339200
ES_00062756	chrX	-	621	1	FSM	ENSMUSG00000100104.2	ENSMUST00000122039.2	465	1	-26	-130	-26	130	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTGCACACACACACACAC	NA	False	NA	NA	False	AATAAA	-7	NA	144385323	144384702	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_144384700_144385300
ES_00062757	chrX	-	4935	21	FSM	ENSMUSG00000031290.15	ENSMUST00000136789.8	4930	21	0	-5	0	0	multi-exon	TRUE	canonical	0	0	junction_17	2.22710574513201	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGAACTCATTTTTTTT	NA	False	NA	NA	False	GATAAA	-21	NA	146337077	146253370	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_146256073_146263252_146263331_146263463_146263602_146263779_146263893_146264610_146264669_146267749_146267801_146271229_146271275_146274830_146274948_146275034_146275084_146279762_146279829_146286379_146286488_146291654_146291714_146291814_146291913_146292105_146292218_146292700_146292789_146295048_146295183_146302033_146302171_146302255_146302362_146305508_146305636_146308269_146308415_146336673
ES_00062759	chrX	-	1262	3	FSM	ENSMUSG00000041353.13	ENSMUST00000163233.2	1256	3	0	-6	0	0	multi-exon	FALSE	canonical	3	16	junction_2	123	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149223901	149191573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149192597_149203337_149203438_149223762
ES_00062761	chrX	-	1316	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242150	149191573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149192597_149203337_149203438_149241957
ES_00062762	chrX	-	1203	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	3	-342	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242147	149191573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149192597_149203337_149203438_149242067
ES_00062763	chrX	-	1885	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	-1	0	0	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCATGTTGAGTGGATATT	NA	False	NA	-3	True	AATAAA	-22	NA	149371145	149354502	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ES_00062765	chrX	-	6628	13	NIC	ENSMUSG00000025272.17	novel	6610	13	NA	NA	0	-1	intron_retention	FALSE	canonical	1	1	junction_12	7.62488615579858	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGAGCTTATTCTGTCCT	NA	False	NA	-22	True	ATTAAA	-13	NA	149440368	149428304	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_149428518_149428689_149432652_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440253
ES_00062766	chrX	-	832	4	FSM	ENSMUSG00000025272.17	ENSMUST00000171775.2	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.64279609239471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCAGCTGTGGCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	149434716	149432584	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149432652_149433429_149433545_149433972_149434455_149434548
ES_00062767	chrX	-	2226	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	760	-1	11	1	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGCCATTTTTGTTTT	NA	False	NA	1	True	NA	NA	NA	149595943	149589415	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
ES_00062768	chrX	-	2164	13	NIC	ENSMUSG00000025268.16	novel	2183	13	NA	NA	0	1	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGCCATTTTTGTTTT	NA	False	NA	1	True	NA	NA	NA	149595964	149589415	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
ES_00062769	chrX	-	2577	11	FSM	ENSMUSG00000025268.16	ENSMUST00000145342.8	2572	11	0	-5	0	5	multi-exon	FALSE	canonical	3	154	junction_8	16.0735808082704	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCATTTTTGTTTTCTTT	NA	False	NA	5	True	NA	NA	NA	149595964	149589411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
ES_00062770	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	5	-5	5	5	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCATTTTTGTTTTCTTT	NA	False	NA	5	True	NA	NA	NA	149596698	149589411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
ES_00062771	chrX	-	2106	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	31	46	31	5	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCATTTTTGTTTTCTTT	NA	False	NA	5	True	NA	NA	NA	149597310	149589411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
ES_00062772	chrX	-	3377	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	35	4014	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	140.432799209266	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTGTCCTGGAACTC	NA	False	NA	NA	False	NA	NA	NA	149800283	149762122	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_149762173_149767643_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
ES_00062773	chrX	-	4878	16	FSM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	0	-9	0	9	multi-exon	FALSE	canonical	3	473	junction_8	38.4461528201024	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTTTTCATTTCTTTGG	NA	False	NA	-7	True	NA	NA	NA	149800318	149766127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
ES_00062780	chrX	-	3808	5	FSM	ENSMUSG00000025264.13	ENSMUST00000026295.10	3804	5	0	-4	0	3	multi-exon	FALSE	canonical	3	72	junction_1	125.415310070182	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTCCTTGTTTCAAGT	NA	False	NA	2	True	AAAAAG	-21	NA	149879539	149870086	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149873411_149873591_149873778_149874671_149874764_149879160_149879252_149879424
ES_00062781	chrX	-	568	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	-41	-44	-41	44	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAGAGACAAATATGTTG	NA	False	NA	NA	False	AATAAA	-27	NA	149998686	149998118	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149998100_149998700
ES_00062783	chrX	-	1059	1	FSM	ENSMUSG00000084166.2	ENSMUST00000121488.2	717	1	-173	-169	-173	169	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTTTAAGTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	150197553	150196494	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_150196500_150197600
ES_00062788	chrX	-	4259	4	NIC	ENSMUSG00000087403.10	novel	398	4	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	2.82842712474619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTGACTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	151110459	151077819	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_151081871_151103205_151103281_151110156_151110236_151110405
ES_00062789	chrX	-	4310	4	FSM	ENSMUSG00000087403.10	ENSMUST00000181635.8	398	4	-7	-3905	0	4	multi-exon	FALSE	canonical	3	22	junction_1	27.8128667266709	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTGACTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	151110466	151077819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151081871_151103205_151103281_151110156_151110236_151110361
ES_00062790	chrX	-	367	4	FSM	ENSMUSG00000087403.10	ENSMUST00000141922.8	367	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	33.5360502544153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATAGAGCACCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	151110466	151098307	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151098416_151103205_151103281_151110156_151110236_151110361
ES_00062793	chrX	-	2802	6	FSM	ENSMUSG00000041096.14	ENSMUST00000149685.8	2804	6	0	2	0	1	multi-exon	FALSE	canonical	3	155	junction_2	17.9844377170931	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGGAGTCTTTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	151125421	151119849	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123377_151124535
ES_00062794	chrX	-	7501	10	FSM	ENSMUSG00000045180.14	ENSMUST00000101141.9	7494	10	0	-7	0	7	multi-exon	TRUE	canonical	3	27	junction_9	12.3987255418341	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTACTACAATGCTATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	151552457	151392497	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406332_151440419_151440521_151442259_151444715_151456527_151456660_151478635_151478788_151552281
ES_00062795	chrX	-	7213	10	FSM	ENSMUSG00000045180.14	ENSMUST00000062317.5	6997	10	-216	0	-216	0	multi-exon	FALSE	canonical	3	14	junction_5	17.4384278371675	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAATGTCTTTATTTCCT	NA	False	NA	-2	True	AATAAA	-21	NA	151552677	151392987	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406314_151440419_151440521_151442259_151444715_151456527_151456660_151478635_151478788_151552281
ES_00062796	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	358	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693151	151692500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151692500_151693200
ES_00062797	chrX	-	1410	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTCATTTATTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	151820571	151819161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151819200_151820600
ES_00062798	chrX	-	5497	3	FSM	ENSMUSG00000063728.11	ENSMUST00000112562.8	1212	3	-91	-4194	-91	4194	multi-exon	FALSE	canonical	3	8	junction_2	0.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGTAATTTGGGTATGA	NA	False	NA	NA	False	NA	NA	NA	153719074	153702813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153708120_153709022_153709112_153718972
ES_00062799	chrX	-	1744	5	Genic_Genomic	ENSMUSG00000094196.3	novel	963	1	NA	NA	-9495	378	multi-exon	FALSE	canonical	3	11	junction_3	4.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTAATCTCTTGTTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	153741996	153731160	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_153732567_153733511_153733601_153740339_153740441_153741158_153741264_153741953
ES_00062801	chrX	-	1661	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	-10	-5	-10	5	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTAGTTTCTTGTTGTG	NA	False	NA	0	True	AATAAA	-21	NA	153778856	153768765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
ES_00062802	chrX	-	1764	5	NNC	ENSMUSG00000079350.3	novel	1646	4	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	13.4233937586588	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTTAGTTTCTTGTTG	NA	False	NA	-2	True	AATAAA	-19	NA	153778857	153768767	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_153770173_153771107_153771197_153777179_153777280_153777995_153778100_153778791
ES_00062803	chrX	-	1556	3	NIC	ENSMUSG00000055746.10	novel	1685	4	NA	NA	32	8	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	13	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAACACTAAAATCTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	153816256	153810188	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_153811648_153812583_153812673_153816248
ES_00062804	chrX	-	1717	4	FSM	ENSMUSG00000055746.10	ENSMUST00000069477.8	1685	4	-24	-8	-24	8	multi-exon	FALSE	canonical	2	9	junction_2	9.56846672960488	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAACACTAAAATCTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	153816312	153810188	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153811648_153812583_153812673_153815451_153815557_153816248
ES_00062806	chrX	-	1672	4	NNC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	769	3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	18.9912260443255	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTAGTTTCTTTTTGTG	NA	False	NA	3	True	AATAAA	-21	NA	153845372	153836053	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_153837456_153838390_153838480_153844474_153844576_153845292
ES_00062807	chrX	-	1471	1	FSM	ENSMUSG00000096644.2	ENSMUST00000078193.5	1108	1	-2	-361	-2	361	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCTGCACTGGTGCCC	NA	False	NA	NA	False	ATTAAA	-37	NA	153872791	153871320	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153871300_153872800
ES_00062809	chrX	-	1168	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	0	-6	0	6	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTTACTAGTCCTATA	NA	False	NA	-1	True	AATAAA	-30	NA	153999445	153996121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ES_00062810	chrX	-	1280	7	FSM	ENSMUSG00000025283.16	ENSMUST00000152463.8	1272	7	-2	-6	-2	6	multi-exon	FALSE	canonical	3	28	junction_4	540.496993516153	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTTACTAGTCCTATA	NA	False	NA	-1	True	AATAAA	-30	NA	153999447	153996121	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998116_153998227_153998596_153998681_153998780_153998833_153999098
ES_00062813	chrX	-	773	2	FSM	ENSMUSG00000025283.16	ENSMUST00000123337.2	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	1315	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAAAAAATATATGTGT	NA	False	NA	NA	False	NA	NA	NA	153999323	153998450	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153998681_153998780
ES_00062814	chrX	-	4136	2	Genic_Genomic	ENSMUSG00000052157.5	novel	1551	1	NA	NA	-341	3492	multi-exon	FALSE	canonical	3	17	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATGTTCTCATCTATT	NA	False	NA	NA	False	NA	NA	NA	154089086	154083702	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_154086142_154087389
ES_00062815	chrX	-	1003	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	-13	0	13	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTTCTTGGATACTATC	NA	False	NA	12	True	AATAAA	-35	NA	154121463	154106900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
ES_00062816	chrX	-	1594	1	FSM	ENSMUSG00000085711.5	ENSMUST00000120749.2	1302	1	37	-329	37	329	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTAGAAAATTTTACAGA	NA	False	NA	NA	False	TTTAAA	-37	NA	155800489	155798895	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_155798900_155800500
ES_00062817	chrX	-	3720	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	0	-3	0	3	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTCCATTATGCCTG	NA	False	NA	-1	True	AATAAA	-14	NA	156275283	156226847	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ES_00062819	chrX	-	4795	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	7	-5	7	5	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTATCATATTTTTTAC	NA	False	NA	0	True	AATAAA	-40	NA	156381704	156330814	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ES_00062820	chrX	-	4588	10	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	42.882267767562	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTATCATATTTTTTAC	NA	False	NA	0	True	AATAAA	-40	NA	156381646	156330814	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ES_00062821	chrX	-	3837	6	FSM	ENSMUSG00000046873.19	ENSMUST00000179062.8	3890	6	0	53	0	-53	multi-exon	FALSE	canonical	3	30	junction_1	80.1164152967418	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAAAAGTGGTATTTTT	NA	False	NA	NA	False	TTTAAA	-14	NA	156381646	156348995	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ES_00062822	chrX	-	3476	7	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	123	-167	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	90.1432501940969	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	156381516	156349109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ES_00062824	chrX	-	1899	5	NNC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	3	-179	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	105.502073439341	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAATTAAAAATAGCTTGC	NA	False	NA	NA	False	AATAAA	-9	NA	156381643	156349121	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_156350435_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ES_00062825	chrX	-	2379	5	FSM	ENSMUSG00000046873.19	ENSMUST00000139786.8	2379	5	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	45.1386752131695	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156381647	156354214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ES_00062827	chrX	-	276	1	FSM	ENSMUSG00000082693.4	ENSMUST00000120855.2	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGATGCCAGCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	158368054	158367778	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_158367800_158368100
ES_00062829	chrX	-	2770	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	0	40298	intron_retention	FALSE	non_canonical	0	0	junction_1	415.306080494697	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATATTTTTTCCTTACCA	NA	False	NA	NA	False	NA	NA	NA	158921305	158864906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_158864943_158905214_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ES_00062830	chrX	-	2848	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	0	0	0	0	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921409	158905204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ES_00062831	chrX	-	3862	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ES_00062832	chrX	-	2725	5	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	76	9870	76	128	5prime_fragment	FALSE	canonical	3	191	junction_2	21.2132034355964	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTGTTGGTTTTGTC	NA	False	NA	-23	True	ATTAAA	-16	NA	161612374	161571784	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ES_00062833	chrX	-	2087	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	False	NA	NA	False	TATAAA	-15	NA	161671443	161640052	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ES_00062836	chrX	-	2745	11	FSM	ENSMUSG00000031370.13	ENSMUST00000112289.9	2735	11	0	-10	0	10	multi-exon	FALSE	canonical	3	107	junction_1	287.175643117588	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAGAGTAAACTATATCAA	NA	False	NA	NA	False	TTTAAA	-17	NA	162741585	162718428	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_162719962_162722301_162722412_162723114_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ES_00062839	chrX	-	3867	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTAAAAACTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	162741594	162733381	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ES_00062840	chrX	-	1524	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	11	978	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741646	162735608	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
ES_00062843	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859117	162853700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
ES_00062844	chrX	-	1712	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859146	162853700	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
ES_00062845	chrX	-	1978	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	0	-1175	0	-5	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCATTCAGGTTTTTCT	NA	False	NA	-23	True	AATAAA	-10	NA	162859489	162853705	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
ES_00062846	chrX	-	2498	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112248.9	2487	15	0	-11	0	11	multi-exon	FALSE	canonical	1	2	junction_1	17.7207649441011	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGATAAAGCATTTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	163763371	163719153	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_163720081_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
ES_00062847	chrX	-	2504	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112247.9	2479	15	-25	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	17.508598470699	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTCTGGTGCTTTTCAT	NA	False	NA	NA	False	TATAAA	-39	NA	163763318	163719313	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_163720300_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
ES_00062848	chrX	-	2015	15	FSM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_12	10.321366781822	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTAGTCTGC	NA	False	NA	NA	False	AATACA	-40	NA	163763331	163721204	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
ES_00062849	chrX	-	4458	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	0	-5	0	5	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGACTTCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	165223700	165173023	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
ES_00062850	chrX	-	1361	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	98	-12	98	12	multi-exon	FALSE	canonical	3	555	junction_2	7.5	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTAATTTGATTACCTC	NA	False	NA	4	True	ATTAAA	-36	NA	165262765	165240236	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_165241340_165245310_165245339_165262535
ES_00062851	chrX	-	4563	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	-512	-1	-512	1	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTATTCTCCAATATTTT	NA	False	NA	-1	True	AATAAA	-21	NA	165293986	165282806	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
ES_00062852	chrX	-	2718	12	FSM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	0	-14	0	14	multi-exon	FALSE	canonical	2	11	junction_6	3.09892009982897	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTCATCTTAAAAATTC	NA	False	NA	NA	False	AATAAA	-29	NA	165368716	165305988	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409_165321731_165329416_165329540_165331818_165331954_165335420_165335541_165339965_165340086_165345937_165346031_165351404_165351518_165368451
ES_00062853	chrX	-	768	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	0	0	0	0	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCTGCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	165992311	165990088	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_165990532_165990932_165991048_165992101
ES_00062854	chrX	-	1751	4	NNC	ENSMUSG00000049775.17	novel	768	3	NA	NA	-4968	0	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_3	563.006414015171	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCTGCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	165997279	165990088	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_165990532_165990932_165991048_165992101_165992341_165996325
ES_00062855	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	3	187	junction_5	11.6535640709422	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	False	NA	-3	True	AATAAA	-24	NA	166165745	166129317	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ES_00062856	chrX	-	604	3	FSM	ENSMUSG00000025742.6	ENSMUST00000145456.2	599	3	0	-5	0	5	multi-exon	FALSE	canonical	1	3	junction_1	111.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTCCTAAGATCTCCT	NA	False	NA	NA	False	AATAAA	-30	NA	166165706	166155399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_166155579_166156998_166157183_166165465
ES_00062857	chrX	-	2387	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1394	0	15	0	3prime_fragment	TRUE	canonical	3	23	junction_11	7.54928708800971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167455500	167437112	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
ES_00062858	chrX	-	2316	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
ES_00062860	chrX	-	2320	7	FSM	ENSMUSG00000031352.11	ENSMUST00000033717.9	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	111.381351920129	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103276	168094525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103110
ES_00062861	chrX	-	2473	7	FSM	ENSMUSG00000031352.11	ENSMUST00000112115.2	2473	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	157.36096155725	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103290	168094525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102971
ES_00062862	chrX	-	797	1	NIC	ENSMUSG00000072844.7	novel	2380	2	NA	NA	1642	-1436	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168760271	168759474	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_168759500_168760300
ES_00062863	chrX	-	2368	4	Fusion	ENSMUSG00000087263.2_ENSMUSG00000086695.2	novel	509	3	NA	NA	93	-2104	multi-exon	FALSE	canonical	0	0	junction_1	0	7295	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATCTCCATTCTAGT	NA	False	NA	NA	False	GATAAA	-13	NA	168769842	168764146	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_-_168765237_168766270_168767152_168767934_168768193_168769703
ES_00062866	chrX	-	977	2	Intergenic	novelGene_4527	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	614	junction_1	0	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGCAAATCTGTGCGAG	NA	False	NA	NA	False	TTTAAA	-32	NA	168804735	168803060	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_168803175_168803872
ES_00062867	chrX	-	605	2	Intergenic	novelGene_4528	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	3	172	junction_1	0	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGCATCTCTGAGTCCG	NA	False	NA	NA	False	NA	NA	NA	168805554	168803507	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_168803784_168805225
ES_00062868	chrX	-	704	1	Intergenic	novelGene_4529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTTCTGTCATGGAG	NA	False	NA	NA	False	AATAAA	-16	NA	168856710	168856006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_168856000_168856700
ES_00062869	chrX	-	375	3	Intergenic	novelGene_4530	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCGCGTCGTCGCGGAG	NA	False	NA	NA	False	NA	NA	NA	168910414	168909110	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_168909183_168909524_168909663_168910249
ES_00062871	chrX	-	1127	7	Intergenic	novelGene_4532	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_6	19.3045763140937	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGCCCCAGAGAAGTGGG	NA	False	NA	-50	True	NA	NA	NA	169094637	169090919	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_169091046_169091285_169091434_169092160_169092263_169092526_169092592_169092967_169093033_169093216_169093264_169094063
ES_00062872	chrX	+	410	1	Intergenic	novelGene_4282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGCAGGTAAAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	5173026	5173436	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_5173000_5173400
ES_00062873	chrX	+	247	1	Intergenic	novelGene_4283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGAAAATAGAAGCTAGTG	NA	False	NA	NA	False	AATAAA	-20	NA	5358504	5358751	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_5358500_5358800
ES_00062874	chrX	+	276	1	Intergenic	novelGene_4285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGATAGACAAGAAAAAAACT	NA	False	NA	NA	False	TTTAAA	-34	NA	5797267	5797543	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_5797300_5797500
ES_00062875	chrX	+	225	1	Intergenic	novelGene_4288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	409	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAGTCTACTTATCCAAG	69	False	NA	NA	False	NA	NA	NA	7577577	7577802	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_7577600_7577800
ES_00062876	chrX	+	228	1	Intergenic	novelGene_4289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTGTTATAGCTTG	3555	False	NA	NA	False	NA	NA	NA	7878034	7878262	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_7878000_7878300
ES_00062877	chrX	+	217	1	Intergenic	novelGene_4290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAAAGAGGGGGTGG	3922	False	NA	NA	False	NA	NA	NA	7970275	7970492	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_7970300_7970500
ES_00062878	chrX	+	265	1	Intergenic	novelGene_4291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAATACTGGCTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8018477	8018742	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_8018500_8018700
ES_00062879	chrX	+	302	1	Intergenic	novelGene_4292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTTTCAAGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	8092270	8092572	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_8092300_8092600
ES_00062880	chrX	+	229	1	Intergenic	novelGene_4294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATGCTCTTAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	8104611	8104840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_8104600_8104800
ES_00062881	chrX	+	208	1	Intergenic	novelGene_4296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAAGATTCTTGATTGA	NA	False	NA	NA	False	NA	NA	NA	8153259	8153467	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_8153300_8153500
ES_00062882	chrX	+	499	1	Intergenic	novelGene_4300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAAGCGGGAGTTGAAG	NA	False	NA	NA	False	NA	NA	NA	10528691	10529190	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_10528700_10529200
ES_00062883	chrX	+	207	1	Intergenic	novelGene_4302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACACTAGCACCAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	12187259	12187466	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_12187300_12187500
ES_00062884	chrX	+	220	1	Intergenic	novelGene_4303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCATGTTTGAGAAATTG	NA	False	NA	NA	False	AATAAA	-22	NA	12517887	12518107	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_12517900_12518100
ES_00062885	chrX	+	210	1	Intergenic	novelGene_4305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAGAAAAAAAACCGG	NA	False	NA	NA	False	NA	NA	NA	12715047	12715257	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_12715000_12715300
ES_00062886	chrX	+	292	1	Intergenic	novelGene_4307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAAATAGGGTTGTCAC	3068	False	NA	NA	False	NA	NA	NA	13075884	13076176	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_13075900_13076200
ES_00062887	chrX	+	750	1	Intergenic	novelGene_4311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	387	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCAAAATTTTCTAGTG	NA	False	NA	NA	False	NA	NA	NA	16208205	16208955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_16208200_16209000
ES_00062888	chrX	+	973	1	Intergenic	novelGene_4312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGACACAAAAGGGAACAGA	NA	False	NA	NA	False	NA	NA	NA	16209396	16210369	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_16209400_16210400
ES_00062889	chrX	+	653	1	Intergenic	novelGene_4313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	17647500	17648153	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_17647500_17648200
ES_00062890	chrX	+	203	1	Intergenic	novelGene_4315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAGGTGTGGAACACATG	NA	False	NA	NA	False	AAAAAG	-1	NA	20190000	20190203	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_20190000_20190200
ES_00062891	chrX	+	217	1	Intergenic	novelGene_4319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGGTACCATCTTTATGG	NA	False	NA	NA	False	NA	NA	NA	20519242	20519459	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_20519200_20519500
ES_00062892	chrX	+	206	1	Intergenic	novelGene_4320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTGAAGAGAGTCAACTAA	NA	False	NA	NA	False	NA	NA	NA	21101256	21101462	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_21101300_21101500
ES_00062893	chrX	+	226	1	Intergenic	novelGene_4321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCATGGAAGGAGTTACAGA	NA	False	NA	NA	False	NA	NA	NA	21338585	21338811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_21338600_21338800
ES_00062894	chrX	+	3252	1	Intergenic	novelGene_4322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAAGGATTACTGGCCT	856	False	NA	NA	False	NA	NA	NA	21485478	21488730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_21485500_21488700
ES_00062895	chrX	+	304	1	Intergenic	novelGene_4324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTACTTTCTCACTGT	2955	False	NA	NA	False	NA	NA	NA	21490277	21490581	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_21490300_21490600
ES_00062896	chrX	+	244	1	Intergenic	novelGene_4325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	22251116	22251360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_22251100_22251400
ES_00062897	chrX	+	355	1	Intergenic	novelGene_4327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATAAATAAAG	NA	False	NA	NA	False	ATTAAA	-22	NA	23381972	23382327	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_23382000_23382300
ES_00062898	chrX	+	4529	1	Intergenic	novelGene_4329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTGTTGCGACAC	NA	False	NA	NA	False	NA	NA	NA	25166695	25171224	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_25166700_25171200
ES_00062899	chrX	+	366	1	Intergenic	novelGene_4332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	860	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCTAGATATCTATTTT	NA	False	NA	NA	False	NA	NA	NA	26369555	26369921	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_26369600_26369900
ES_00062900	chrX	+	3134	1	Intergenic	novelGene_4333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAAACCCAAGTTTAAA	NA	False	NA	NA	False	NA	NA	NA	27615410	27618544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_27615400_27618500
ES_00062901	chrX	+	1161	1	Intergenic	novelGene_4335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTGTTGCGACAC	NA	False	NA	NA	False	NA	NA	NA	27618778	27619939	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_27618800_27619900
ES_00062902	chrX	+	4529	1	Intergenic	novelGene_4336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTTATTGTTGCGAC	NA	False	NA	NA	False	NA	NA	NA	28623189	28627718	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_28623200_28627700
ES_00062903	chrX	+	5207	1	Intergenic	novelGene_4337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATCAGAGTAACTGTCT	NA	False	NA	NA	False	NA	NA	NA	29483380	29488587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_29483400_29488600
ES_00062904	chrX	+	443	1	Intergenic	novelGene_4339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAAAGGAAAATGGATT	NA	False	NA	NA	False	NA	NA	NA	33289047	33289490	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_33289000_33289500
ES_00062905	chrX	+	715	1	Intergenic	novelGene_4340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGATTTGTTAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	33291916	33292631	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_33291900_33292600
ES_00062906	chrX	+	202	1	Intergenic	novelGene_4341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAATCTTATTTCAAA	NA	False	NA	NA	False	NA	NA	NA	35469451	35469653	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_35469500_35469700
ES_00062907	chrX	+	219	1	Intergenic	novelGene_4342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGACTATAGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	35786673	35786892	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_35786700_35786900
ES_00062908	chrX	+	203	1	Intergenic	novelGene_4343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	35860121	35860324	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_35860100_35860300
ES_00062909	chrX	+	260	1	Intergenic	novelGene_4344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	531	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGCAGATTAGGTTTCT	NA	False	NA	NA	False	TTTAAA	-21	NA	35983860	35984120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_35983900_35984100
ES_00062910	chrX	+	207	1	Intergenic	novelGene_4345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATTCTTATTTCTTATGG	NA	False	NA	NA	False	NA	NA	NA	36030375	36030582	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_36030400_36030600
ES_00062911	chrX	+	400	1	Intergenic	novelGene_4348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	380	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCAATTCTTAAATACT	NA	False	NA	NA	False	NA	NA	NA	36149650	36150050	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_36149600_36150000
ES_00062912	chrX	+	2931	1	Intergenic	novelGene_4352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCTAACAAAGTTAATTCA	NA	False	NA	NA	False	NA	NA	NA	37802332	37805263	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_37802300_37805300
ES_00062913	chrX	+	226	1	Intergenic	novelGene_4353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGACCTGCTACTGG	NA	False	NA	NA	False	NA	NA	NA	38487875	38488101	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_38487900_38488100
ES_00062914	chrX	+	218	1	Intergenic	novelGene_4355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTTTGATAAATTTTT	NA	False	NA	NA	False	TTTAAA	-39	NA	40773359	40773577	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_40773400_40773600
ES_00062915	chrX	+	202	1	Intergenic	novelGene_4356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTTCCAACTTTAAAGAT	NA	False	NA	NA	False	NA	NA	NA	42542422	42542624	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_42542400_42542600
ES_00062917	chrX	+	203	1	Intergenic	novelGene_4357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	233	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGTGGTTTCTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	45758696	45758899	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_45758700_45758900
ES_00062918	chrX	+	770	1	Intergenic	novelGene_4358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATTCCAAGTTGTATAT	NA	False	NA	NA	False	AAGAAA	-28	NA	47099132	47099902	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_47099100_47099900
ES_00062919	chrX	+	209	1	Intergenic	novelGene_4360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATAGATTTCTAATTG	NA	False	NA	NA	False	NA	NA	NA	47465602	47465811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_47465600_47465800
ES_00062920	chrX	+	215	1	Intergenic	novelGene_4364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATTTCATCATGAGAAG	NA	False	NA	NA	False	NA	NA	NA	47619561	47619776	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_47619600_47619800
ES_00062921	chrX	+	202	1	Intergenic	novelGene_4366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAATGTTTTTAATTGT	NA	False	NA	NA	False	NA	NA	NA	47758229	47758431	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_47758200_47758400
ES_00062922	chrX	+	223	1	Intergenic	novelGene_4367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTACCATTGTTATGGTG	NA	False	NA	NA	False	NA	NA	NA	49524717	49524940	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_49524700_49524900
ES_00062923	chrX	+	2636	1	Intergenic	novelGene_4368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCTCACACATTCGCAC	NA	False	NA	NA	False	NA	NA	NA	50202374	50205010	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_50202400_50205000
ES_00062924	chrX	+	2504	1	Intergenic	novelGene_4369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGCTGCGCTGCGCTAG	NA	False	NA	NA	False	NA	NA	NA	50291178	50293682	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_50291200_50293700
ES_00062925	chrX	+	220	1	Intergenic	novelGene_4370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTGACCTTTTGGCACT	NA	False	NA	NA	False	NA	NA	NA	52069832	52070052	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_52069800_52070100
ES_00062926	chrX	+	208	1	Intergenic	novelGene_4371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAGAAAACACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52506360	52506568	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_52506400_52506600
ES_00062927	chrX	+	230	1	Intergenic	novelGene_4372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGACTTTATTCCCTCCC	NA	False	NA	NA	False	TTTAAA	-12	NA	53255634	53255864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_53255600_53255900
ES_00062928	chrX	+	220	1	Intergenic	novelGene_4375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTTGCATTTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	56424909	56425129	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_56424900_56425100
ES_00062929	chrX	+	230	1	Intergenic	novelGene_4376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAACTGACTGCACATGAA	2513	False	NA	NA	False	NA	NA	NA	56795257	56795487	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_56795300_56795500
ES_00062930	chrX	+	215	1	Intergenic	novelGene_4380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGTGGCACATGCCT	NA	False	NA	NA	False	AAAAAG	-15	NA	58400260	58400475	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_58400300_58400500
ES_00062931	chrX	+	215	1	Intergenic	novelGene_4383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTTATTCTTAAATGTT	NA	False	NA	NA	False	NA	NA	NA	59955015	59955230	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_59955000_59955200
ES_00062935	chrX	+	216	1	Intergenic	novelGene_4390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1074	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71631922	71632138	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_71631900_71632100
ES_00062936	chrX	+	401	1	Intergenic	novelGene_4392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAGCAGGCCATGGA	NA	False	NA	NA	False	AAGAAA	-43	NA	72783387	72783788	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_72783400_72783800
ES_00062937	chrX	+	257	1	Intergenic	novelGene_4393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTGGTTTTTTGAGAC	NA	False	NA	NA	False	NA	NA	NA	72946019	72946276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_72946000_72946300
ES_00062938	chrX	+	204	1	Intergenic	novelGene_4394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAGAAAGAAAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	72981355	72981559	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_72981400_72981600
ES_00062939	chrX	+	319	1	Intergenic	novelGene_4396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTGGAGATAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	73051869	73052188	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73051900_73052200
ES_00062940	chrX	+	959	1	Intergenic	novelGene_4399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGTGTGTAGCACC	NA	False	NA	NA	False	NA	NA	NA	73301987	73302946	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73302000_73302900
ES_00062941	chrX	+	205	1	Intergenic	novelGene_4400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAAAAAAAATCTGCCT	NA	False	NA	NA	False	NA	NA	NA	73319244	73319449	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73319200_73319400
ES_00062942	chrX	+	219	1	Intergenic	novelGene_4402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAAATAACTCAACTA	6051	False	NA	NA	False	NA	NA	NA	73509212	73509431	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73509200_73509400
ES_00062943	chrX	+	282	1	Intergenic	novelGene_4404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATCATTTTAGCATGGCA	NA	False	NA	NA	False	AGTAAA	-28	NA	73671854	73672136	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73671900_73672100
ES_00062944	chrX	+	236	1	Intergenic	novelGene_4405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTATATTTTTGTCGAA	NA	False	NA	NA	False	TTTAAA	-1	NA	74099534	74099770	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_74099500_74099800
ES_00062945	chrX	+	304	1	Intergenic	novelGene_4408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATAACATTCGGTTGCT	7039	False	NA	NA	False	NA	NA	NA	74278491	74278795	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_74278500_74278800
ES_00062946	chrX	+	309	1	Intergenic	novelGene_4410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACTGTACATTACAGT	6752	False	NA	NA	False	TATAAA	-5	NA	78960770	78961079	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_78960800_78961100
ES_00062947	chrX	+	250	1	Intergenic	novelGene_4412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCCTGTTAGTACGCTAA	NA	False	NA	NA	False	NA	NA	NA	81607973	81608223	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_81608000_81608200
ES_00062948	chrX	+	229	1	Intergenic	novelGene_4413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATATTTTGGTTAACTCA	NA	False	NA	NA	False	NA	NA	NA	84836823	84837052	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_84836800_84837100
ES_00062950	chrX	+	301	1	Intergenic	novelGene_4421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACTGGTTCTTGAACAG	NA	False	NA	NA	False	NA	NA	NA	93067718	93068019	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_93067700_93068000
ES_00062952	chrX	+	247	1	Intergenic	novelGene_4423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATAGCAAGTATTACCCT	NA	False	NA	NA	False	NA	NA	NA	98364385	98364632	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_98364400_98364600
ES_00062957	chrX	+	209	1	Intergenic	novelGene_4430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	714	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGCCTTCTTATAGA	NA	False	NA	NA	False	NA	NA	NA	101099926	101100135	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_101099900_101100100
ES_00062958	chrX	+	220	1	Intergenic	novelGene_4431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTAACTTTTGTAGGTA	5229	False	NA	NA	False	NA	NA	NA	101247965	101248185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_101248000_101248200
ES_00062959	chrX	+	246	1	Intergenic	novelGene_4432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGTGTAGTAGAATCTG	3869	False	NA	NA	False	NA	NA	NA	101258435	101258681	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_101258400_101258700
ES_00062960	chrX	+	204	1	Intergenic	novelGene_4435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCCGCTCTCCTGGCAC	NA	False	NA	NA	False	NA	NA	NA	101767800	101768004	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_101767800_101768000
ES_00062961	chrX	+	211	1	Intergenic	novelGene_4436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAATTTTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	102182376	102182587	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_102182400_102182600
ES_00062962	chrX	+	220	1	Intergenic	novelGene_4437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAAAAGACCTTAAAACC	NA	False	NA	NA	False	NA	NA	NA	102261140	102261360	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_102261100_102261400
ES_00062963	chrX	+	230	1	Intergenic	novelGene_4438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGATCGTTAAAATCAAAA	NA	False	NA	NA	False	NA	NA	NA	102285900	102286130	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_102285900_102286100
ES_00062964	chrX	+	233	1	Intergenic	novelGene_4440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAAGTTTCAGGGGATC	NA	False	NA	NA	False	NA	NA	NA	102380023	102380256	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_102380000_102380300
ES_00062965	chrX	+	214	1	Intergenic	novelGene_4443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAGTTCAACAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	104194706	104194920	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_104194700_104194900
ES_00062966	chrX	+	242	1	Intergenic	novelGene_4444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1987	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCATTTAAACCAAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	104624713	104624955	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_104624700_104625000
ES_00062968	chrX	+	206	1	Intergenic	novelGene_4445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAGGTGGTGGTGTCTAG	NA	False	NA	NA	False	AGTAAA	-13	NA	105061343	105061549	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_105061300_105061500
ES_00062969	chrX	+	247	1	Intergenic	novelGene_4446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTCTTTAGTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	105648199	105648446	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_105648200_105648400
ES_00062970	chrX	+	356	1	Intergenic	novelGene_4449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACGGTTTCCGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	112914427	112914783	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_112914400_112914800
ES_00062971	chrX	+	247	1	Intergenic	novelGene_4451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTATTCATTTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	113237666	113237913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113237700_113237900
ES_00062972	chrX	+	223	1	Intergenic	novelGene_4454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACAAAGTTTGGCTGTC	NA	False	NA	NA	False	NA	NA	NA	113240187	113240410	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113240200_113240400
ES_00062973	chrX	+	694	1	Intergenic	novelGene_4457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	642	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACCGCTCTCCTGACCA	NA	False	NA	NA	False	NA	NA	NA	113906549	113907243	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113906500_113907200
ES_00062974	chrX	+	426	1	Intergenic	novelGene_4462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCATAGTTTTCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	117479871	117480297	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_117479900_117480300
ES_00062975	chrX	+	932	1	Intergenic	novelGene_4464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAGAACACCAAATG	NA	False	NA	NA	False	AATAGA	-11	NA	119245018	119245950	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_119245000_119246000
ES_00062977	chrX	+	248	1	Intergenic	novelGene_4465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGCAAACAGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	120221528	120221776	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_120221500_120221800
ES_00062980	chrX	+	239	1	Intergenic	novelGene_4467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTGTTATACTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	122063649	122063888	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122063600_122063900
ES_00062982	chrX	+	1946	1	Intergenic	novelGene_4471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATAGATAATTTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	122311687	122313633	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122311700_122313600
ES_00062983	chrX	+	3330	1	Intergenic	novelGene_4472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATATTCTAAATTACCTA	NA	False	NA	NA	False	NA	NA	NA	122748657	122751987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122748700_122752000
ES_00062985	chrX	+	1486	1	Intergenic	novelGene_4477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGGGAAAGCAAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	125498000	125499486	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_125498000_125499500
ES_00062987	chrX	+	218	1	Intergenic	novelGene_4479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTACTTTTCATAATTA	NA	False	NA	NA	False	NA	NA	NA	128613444	128613662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_128613400_128613700
ES_00062988	chrX	+	217	1	Intergenic	novelGene_4481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAATCATTTTTAATCT	NA	False	NA	NA	False	NA	NA	NA	128876180	128876397	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_128876200_128876400
ES_00062989	chrX	+	204	1	Intergenic	novelGene_4484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCTTTTTTCTTAATTC	NA	False	NA	NA	False	NA	NA	NA	134778705	134778909	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_134778700_134778900
ES_00062990	chrX	+	213	1	Intergenic	novelGene_4490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTCCATTTATACTATA	NA	False	NA	NA	False	NA	NA	NA	143052476	143052689	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_143052500_143052700
ES_00062991	chrX	+	205	1	Intergenic	novelGene_4491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAAAGGTGAACTT	8616	False	NA	NA	False	NA	NA	NA	144162356	144162561	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_144162400_144162600
ES_00062993	chrX	+	220	1	Intergenic	novelGene_4493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACAACAAAGGGTTCAT	NA	False	NA	NA	False	TTTAAA	-14	NA	145464965	145465185	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_145465000_145465200
ES_00062995	chrX	+	221	1	Intergenic	novelGene_4497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTTATTTATTATCTAT	NA	False	NA	NA	False	NA	NA	NA	149956010	149956231	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_149956000_149956200
ES_00062998	chrX	+	226	1	Intergenic	novelGene_4498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	151340783	151341009	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151340800_151341000
ES_00062999	chrX	+	216	1	Intergenic	novelGene_4499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCTATGTTCTTACCTT	NA	False	NA	NA	False	NA	NA	NA	151591896	151592112	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151591900_151592100
ES_00063001	chrX	+	352	1	Intergenic	novelGene_4502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAGTCAATGAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	151702854	151703206	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151702900_151703200
ES_00063002	chrX	+	234	1	Intergenic	novelGene_4504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATCAGCTTTTAAGGGG	NA	False	NA	NA	False	NA	NA	NA	151993929	151994163	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151993900_151994200
ES_00063003	chrX	+	207	1	Intergenic	novelGene_4505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAATATTAGAAGTAA	737	False	NA	NA	False	NA	NA	NA	152002628	152002835	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_152002600_152002800
ES_00063005	chrX	+	206	1	Intergenic	novelGene_4506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTACAGGTCTTAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	154096918	154097124	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_154096900_154097100
ES_00063008	chrX	+	238	1	Intergenic	novelGene_4509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAACTACTTCTTAAGACT	NA	False	NA	NA	False	NA	NA	NA	158189711	158189949	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_158189700_158189900
ES_00063009	chrX	+	237	1	Intergenic	novelGene_4510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAGATACCAAAGATACC	NA	False	NA	NA	False	NA	NA	NA	158305174	158305411	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_158305200_158305400
ES_00063011	chrX	+	220	1	Intergenic	novelGene_4513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTTGTTATTATTATTG	NA	False	NA	NA	False	NA	NA	NA	159552597	159552817	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_159552600_159552800
ES_00063012	chrX	+	221	1	Intergenic	novelGene_4514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCAGTTTTCATTCACT	NA	False	NA	NA	False	NA	NA	NA	160389533	160389754	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_160389500_160389800
ES_00063015	chrX	+	233	1	Intergenic	novelGene_4516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACCTCTTAAATGCTTG	NA	False	NA	NA	False	NA	NA	NA	161841424	161841657	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_161841400_161841700
ES_00063016	chrX	+	214	1	Intergenic	novelGene_4517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTATATTTTATAATAG	NA	False	NA	NA	False	NA	NA	NA	162182552	162182766	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_162182600_162182800
ES_00063017	chrX	+	1388	1	Intergenic	novelGene_4519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTGACTGCCAGGATC	NA	False	NA	NA	False	NA	NA	NA	162831419	162832807	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_162831400_162832800
ES_00063018	chrX	+	1906	1	Intergenic	novelGene_4523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCTATAAGAGCAGCGTT	NA	False	NA	NA	False	NA	NA	NA	162833557	162835463	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_162833600_162835500
ES_00063022	chrX	+	337	1	FSM	ENSMUSG00000082109.2	ENSMUST00000121251.2	591	1	207	47	207	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGAGCTCATCTAGACT	NA	False	NA	NA	False	AAGAAA	-38	NA	5983482	5983819	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_5983500_5983800
ES_00063023	chrX	+	243	3	FSM	ENSMUSG00000031144.16	ENSMUST00000137515.2	430	3	114	73	114	-73	multi-exon	FALSE	canonical	1	1	junction_1	0.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTACTCCTCCTCGGCTG	NA	False	NA	NA	False	NA	NA	NA	7506113	7510408	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7506163_7507335_7507461_7510339
ES_00063024	chrX	+	1484	2	NNC	ENSMUSG00000031144.16	novel	2591	7	NA	NA	5207	-9	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTAGTCGTCCCGGCTCT	NA	False	NA	NA	False	AATAAA	-10	NA	7515354	7519486	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_7515428_7518075
ES_00063025	chrX	+	2288	8	FSM	ENSMUSG00000031145.16	ENSMUST00000129662.3	2376	8	88	0	88	0	multi-exon	FALSE	canonical	3	64	junction_2	5.91435472699556	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGATGTAGCTCAGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	7524859	7534425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
ES_00063026	chrX	+	1720	12	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	75.0007162500234	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGCATTTATGACT	4055	False	NA	-7	True	AATAAA	-6	NA	7588504	7594416	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7588618_7589803_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ES_00063031	chrX	+	4717	8	FSM	ENSMUSG00000000134.18	ENSMUST00000143680.8	4717	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	33.9975989548362	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7628935	7641440	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7629300_7631745_7631860_7632793_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687
ES_00063032	chrX	+	2926	10	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	87.2919042249043	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTGAGTCTCCCGTTC	NA	False	NA	20	True	AATAAA	-31	NA	7630180	7641436	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ES_00063033	chrX	+	490	4	FSM	ENSMUSG00000031153.17	ENSMUST00000147232.8	477	4	-13	0	-1	0	multi-exon	FALSE	canonical	3	61	junction_3	10.3708994574027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTCCCCACCTGTTTCT	3258	False	NA	NA	False	NA	NA	NA	7656231	7660783	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498
ES_00063035	chrX	+	4494	7	NIC	ENSMUSG00000009731.5	novel	5287	6	NA	NA	1	-582	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	8.11890797254573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGACTCTGTGGATTG	NA	False	NA	NA	False	AATAAA	-29	NA	7688528	7703937	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7688630_7688839_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
ES_00063036	chrX	+	2708	9	FSM	ENSMUSG00000031154.16	ENSMUST00000115667.10	2708	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	155.078558721056	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGCAACTCTATTCTGT	NA	False	NA	5	True	AATAAA	-17	NA	7708294	7741524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734078_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ES_00063038	chrX	+	1520	5	FSM	ENSMUSG00000031156.19	ENSMUST00000115663.10	1527	5	0	7	0	-3	multi-exon	FALSE	canonical	2	4	junction_4	39.7586468582622	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAGTTGGGTTGGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	7750482	7760696	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759107_7760429
ES_00063040	chrX	+	757	3	ISM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	189	1785	109	-1067	5prime_fragment	FALSE	canonical	3	19	junction_1	28	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGATTCTGCCGTGGCTCC	7916	False	NA	0	True	NA	NA	NA	7915675	7937413	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_7915823_7926454_7926526_7936874
ES_00063041	chrX	+	440	2	Intergenic	novelGene_4293	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATAGCCATCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	8096735	8097641	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_8096896_8097361
ES_00063042	chrX	+	1917	16	FSM	ENSMUSG00000031170.15	ENSMUST00000033512.11	1868	16	-49	0	-49	0	multi-exon	FALSE	canonical	1	1	junction_9	2.63818119165458	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGAGCCGTGTGTT	5364	False	NA	NA	False	AATAAA	-17	NA	8137570	8146418	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8137745_8138125_8138183_8138269_8138349_8138890_8139007_8139113_8139188_8139825_8139919_8140036_8140116_8142358_8142442_8142817_8142877_8142978_8143108_8143259_8143340_8143931_8144033_8144267_8144384_8145096_8145242_8145331_8145436_8145990
ES_00063043	chrX	+	1569	1	FSM	ENSMUSG00000080051.3	ENSMUST00000116165.3	1092	1	-595	118	-595	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCATACAGGGTACA	NA	False	NA	NA	False	NA	NA	NA	8824955	8826524	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8825000_8826500
ES_00063044	chrX	+	528	1	FSM	ENSMUSG00000083123.2	ENSMUST00000122268.2	528	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4480	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTTCAAGTGGACTGA	NA	False	NA	NA	False	NA	NA	NA	8946282	8946810	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8946300_8946800
ES_00063045	chrX	+	501	3	FSM	ENSMUSG00000031007.3	ENSMUST00000137277.2	692	3	-75	266	-75	-266	multi-exon	FALSE	canonical	3	1012	junction_1	37.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCAAACTTTCTCTGTCA	NA	False	NA	NA	False	CATAAA	-9	NA	12453964	12462554	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_12454175_12460999_12461131_12462394
ES_00063046	chrX	+	1257	1	FSM	ENSMUSG00000083307.2	ENSMUST00000121924.2	1257	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTAGACTGTGGTGTATT	NA	False	NA	NA	False	AAAAAG	-34	NA	12803110	12804367	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_12803100_12804400
ES_00063047	chrX	+	8380	47	Fusion	ENSMUSG00000031010.18_ENSMUSG00000087424.2	novel	1452	7	NA	NA	16	-167	multi-exon	FALSE	canonical	3	31	junction_2	269.212009130561	1	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTTTGACTGTTAA	NA	False	NA	NA	False	AATAAA	-43	NA	12908269	13035970	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_12908349_12909795_12909896_12919473_12919590_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00063048	chrX	+	11999	47	NNC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	0	20188	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_46	226.573573306736	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGGTTTTTCTTTCA	823	False	NA	NA	False	AATAAA	-13	NA	12937752	13059755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585_13039415_13059601
ES_00063050	chrX	+	216	1	FSM	ENSMUSG00000084186.2	ENSMUST00000117431.2	216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	19737062	19737278	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_19737100_19737300
ES_00063051	chrX	+	532	1	FSM	ENSMUSG00000080998.2	ENSMUST00000120313.2	463	1	-28	-41	-28	41	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTCACCATAAAAAAAAT	NA	False	NA	NA	False	AATATA	-7	NA	19759867	19760399	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_19759900_19760400
ES_00063052	chrX	+	414	1	FSM	ENSMUSG00000083033.2	ENSMUST00000120423.2	819	1	394	11	394	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCAGTGAGGTTGGTCAG	NA	False	NA	NA	False	NA	NA	NA	20106101	20106515	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20106100_20106500
ES_00063053	chrX	+	4509	6	FSM	ENSMUSG00000060090.17	ENSMUST00000115387.8	4498	6	-11	0	-11	0	multi-exon	TRUE	canonical	2	4	junction_1	195.012820091398	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGATGTCTATACTT	NA	False	NA	3	True	AATAAA	-18	NA	20230786	20267092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20231068_20231278_20231438_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ES_00063056	chrX	+	3019	16	NNC	ENSMUSG00000001127.13	novel	2358	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	39	junction_6	99.1713668353926	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGCACAGAATTCTGCT	6312	False	NA	1	True	NA	NA	NA	20714820	20726736	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ES_00063057	chrX	+	2294	16	NNC	ENSMUSG00000001127.13	novel	2358	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	96.6258764513937	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6320	False	NA	23	True	NA	NA	NA	20714828	20726758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724649_20724752_20724980_20725113_20725923_20726059_20726217
ES_00063060	chrX	+	424	2	Antisense	novelGene_ENSMUSG00000037217.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	7128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAATTATCTGGAGAACT	NA	False	NA	NA	False	NA	NA	NA	20768307	20769324	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_+_20768476_20769068
ES_00063061	chrX	+	1068	5	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-17	612	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_3	30.3016088681773	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCATGGTCATTGTGTT	NA	False	NA	7	True	NA	NA	NA	20828335	20853588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852217_20852400_20853321
ES_00063063	chrX	+	4108	21	NNC	ENSMUSG00000036769.15	novel	4002	21	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	14.7474574079738	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGATTTACAATCTCTAC	NA	False	NA	NA	False	AATAAA	-23	NA	23559300	23672263	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_23559509_23559590_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ES_00063064	chrX	+	856	9	FSM	ENSMUSG00000073255.11	ENSMUST00000101654.10	864	9	0	8	0	-8	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTATGAAACAGAGTTTGAA	NA	False	NA	NA	False	AATAAA	-23	NA	30078890	30101756	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_30078968_30080429_30080553_30086161_30086229_30086767_30086803_30089923_30090050_30090361_30090426_30098624_30098707_30101155_30101255_30101573
ES_00063065	chrX	+	1350	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTTCAAGTTAAACAATG	NA	False	NA	NA	False	NA	NA	NA	32943123	32944473	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_32943100_32944500
ES_00063066	chrX	+	2998	12	NIC	ENSMUSG00000016239.12	novel	2911	11	NA	NA	68	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	15.6437614635123	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTTCATACTTCTTTCT	NA	False	NA	NA	False	TATAAA	-14	NA	35592073	35625993	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_35593053_35596168_35596288_35598864_35598988_35603172_35603329_35605275_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
ES_00063067	chrX	+	714	5	FSM	ENSMUSG00000016239.12	ENSMUST00000126147.2	714	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	16.4981059518964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGGGATGCTGCCTCCGT	NA	False	NA	NA	False	AGTAAA	-31	NA	35592868	35605407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35593053_35596168_35596288_35598864_35598988_35603172_35603329_35605275
ES_00063068	chrX	+	2953	1	FSM	ENSMUSG00000119926.1	ENSMUST00000122667.3	104	1	5	-2854	5	2854	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTCTACCAAAGTGT	NA	False	NA	7	True	ATTAAA	-16	NA	35627556	35630509	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35627600_35630500
ES_00063069	chrX	+	572	4	FSM	ENSMUSG00000079642.3	ENSMUST00000115253.3	1453	4	881	0	881	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACACTGTAATTCTATTT	NA	False	NA	NA	False	AATAAA	-20	NA	35665813	35668308	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35666005_35667049_35667189_35667751_35667794_35668108
ES_00063073	chrX	+	555	3	ISM	ENSMUSG00000095698.3	ENSMUST00000115179.4	685	4	-20	1942	-20	-1942	5prime_fragment	FALSE	canonical	3	16	junction_2	1	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGTGCAGGTCAGTCCG	6869	False	NA	NA	False	NA	NA	NA	36675060	36677334	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_36675169_36675331_36675744_36677299
ES_00063075	chrX	+	712	4	NNC	ENSMUSG00000096788.9	novel	799	4	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_3	23.6690139681023	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTTGTTTTGTGCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36712107	36723465	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36723319
ES_00063076	chrX	+	951	3	NIC	ENSMUSG00000095741.4	novel	799	4	NA	NA	12	2	intron_retention	FALSE	canonical	2	4	junction_2	2	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	9358	False	NA	NA	False	AATAAA	-18	NA	36753069	36757818	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_36753743_36755287_36755334_36757586
ES_00063077	chrX	+	333	1	FSM	ENSMUSG00000081473.4	ENSMUST00000119359.2	394	1	42	19	42	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGACTGCTATCTGAATAAA	5477	False	NA	NA	False	NA	NA	NA	37485853	37486186	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_37485900_37486200
ES_00063080	chrX	+	6879	8	NIC	ENSMUSG00000025860.16	novel	6542	8	NA	NA	16	8	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	36.3806407366358	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTTGTATTTGATTTG	NA	False	NA	26	True	AATAAA	-22	NA	41156773	41198541	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_41156934_41157233_41157750_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ES_00063081	chrX	+	5541	7	NIC	ENSMUSG00000025860.16	novel	6542	8	NA	NA	11	-2	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	42.5535610208541	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTTATCTTCTTTGT	NA	False	NA	16	True	AATAAA	-12	NA	41156805	41198531	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_41156934_41157233_41157360_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ES_00063082	chrX	+	1834	1	FSM	ENSMUSG00000105993.2	ENSMUST00000197237.2	1834	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCCAGAAGGTAAGCAAAAG	NA	False	NA	NA	False	AAGAAA	-40	NA	41578567	41580401	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_41578600_41580400
ES_00063083	chrX	+	5002	23	NIC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	9	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	34.8107338343024	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001352	47054745	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47045086_47045111_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ES_00063086	chrX	+	7417	14	FSM	ENSMUSG00000036959.16	ENSMUST00000037596.13	7360	14	-57	0	-57	0	multi-exon	FALSE	canonical	2	7	junction_1	7.66996755970088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAACCCGTGTCAGGGCC	NA	False	NA	3	True	AAAACA	-11	NA	47432589	47496926	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_47432767_47450409_47450540_47456295_47456387_47456645_47459910_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
ES_00063087	chrX	+	1778	12	NIC	ENSMUSG00000031105.17	novel	1862	13	NA	NA	2	0	intron_retention	FALSE	canonical	2	5	junction_1	47.4155186089816	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTTTGACTTTGTCTT	NA	False	NA	12	True	ATTAAA	-15	NA	47712291	47751169	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_47712706_47714472_47714518_47717012_47717061_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ES_00063088	chrX	+	2453	3	NNC	ENSMUSG00000054850.5	novel	2393	2	NA	NA	-9	75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	29.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAGCTCCAAGCCAAGAG	NA	False	NA	89	True	NA	NA	NA	55419936	55423234	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_55420569_55421389_55421503_55421526
ES_00063089	chrX	+	3958	16	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	-41	0	intron_retention	FALSE	canonical	3	20	junction_9	18.5539453725856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTTCTAGGTGTATGT	NA	False	NA	14	True	AATAAA	-25	NA	55500175	55553198	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ES_00063092	chrX	+	2552	8	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	57.513796037941	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTCCTGTCTTTTTATT	NA	False	NA	11	True	AATAAA	-17	NA	55777149	55838705	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836598_55836799_55837203
ES_00063094	chrX	+	227	1	Intergenic	novelGene_4382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCCCTACTGGCCTTG	NA	False	NA	NA	False	NA	NA	NA	59271700	59271927	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_59271700_59271900
ES_00063096	chrX	+	736	1	Intergenic	novelGene_4384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTCCCATCCATATTAAGA	NA	False	NA	NA	False	NA	NA	NA	60829788	60830524	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_60829800_60830500
ES_00063098	chrX	+	1466	1	FSM	ENSMUSG00000083576.2	ENSMUST00000122164.2	1100	1	0	-366	0	366	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTGGCTTACTAAA	NA	False	NA	NA	False	AATAAA	-14	NA	61298653	61300119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_61298700_61300100
ES_00063100	chrX	+	1333	3	FSM	ENSMUSG00000000838.18	ENSMUST00000127954.8	1333	3	0	0	0	0	multi-exon	FALSE	canonical	3	889	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	67722187	67736100	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_67722474_67731887_67731941_67735106
ES_00063101	chrX	+	4230	16	Fusion	ENSMUSG00000000838.18_ENSMUSG00002075986.1	novel	4058	17	NA	NA	0	0	multi-exon	FALSE	canonical	3	204	junction_13	199.338461472497	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722187	67761569	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
ES_00063102	chrX	+	4269	16	Fusion	ENSMUSG00000000838.18_ENSMUSG00002075986.1	novel	4076	16	NA	NA	0	0	multi-exon	FALSE	canonical	3	169	junction_13	205.444883119536	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722187	67761569	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
ES_00063103	chrX	+	751	5	NNC	ENSMUSG00000062170.13	novel	799	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_3	263.423969106837	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGGATTCTTTTTGTTA	NA	False	NA	25	True	ATTAAA	-25	NA	67805486	67848171	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_67805838_67807537_67807616_67815650_67815748_67847214_67847300_67848031
ES_00063104	chrX	+	1597	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	-53	0	-30	0	multi-exon	FALSE	canonical	3	37	junction_1	352.483687565822	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599493	70604282	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
ES_00063105	chrX	+	1701	6	NNC	ENSMUSG00000015217.12	novel	1743	5	NA	NA	0	14728	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	379.422719404097	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAACCCAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	70599595	70619010	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272_70604270_70618977
ES_00063106	chrX	+	948	1	FSM	ENSMUSG00000033343.2	ENSMUST00000048675.2	948	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCACAGTCTAATGTACT	NA	False	NA	NA	False	NA	NA	NA	71265622	71266570	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_71265600_71266600
ES_00063107	chrX	+	608	3	FSM	ENSMUSG00000031349.5	ENSMUST00000155663.2	992	3	0	384	0	-384	multi-exon	FALSE	canonical	3	352	junction_2	24.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATCAGGGTTCTCATCG	NA	False	NA	NA	False	NA	NA	NA	71973357	71996878	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_71973389_71992770_71992918_71996448
ES_00063108	chrX	+	1273	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	17	-370	at_least_one_novel_splicesite	TRUE	canonical	3	52	junction_1	174.785582929485	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCTCAGAAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	72192418	72202108	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_72192511_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ES_00063109	chrX	+	1190	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	104.319221622863	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257928	72266059	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_72258088_72258379_72258427_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ES_00063110	chrX	+	1304	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ES_00063113	chrX	+	621	4	FSM	ENSMUSG00000002014.13	ENSMUST00000155552.8	619	4	-2	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_1	200.077207319797	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACCCCAGCACCTCCC	5586	False	NA	NA	False	NA	NA	NA	72830787	72833938	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636
ES_00063116	chrX	+	523	5	FSM	ENSMUSG00000008682.14	ENSMUST00000135690.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	2	85	junction_4	3846.15960244762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCCTACCAAATCGTTC	NA	False	NA	-38	True	NA	NA	NA	73314584	73316691	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316520
ES_00063117	chrX	+	2654	6	ISM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	12	2	2	-2	intron_retention	FALSE	canonical	3	226	junction_5	12.5123938556936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATACCTCTGTCTTCTGTG	NA	False	NA	5	True	AATAAA	-18	NA	73326379	73333752	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783
ES_00063119	chrX	+	2440	8	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	76	junction_6	61.4664335143954	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326394	73333754	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332626_73332710_73332789_73332904
ES_00063120	chrX	+	2065	9	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	9	-3	intron_retention	FALSE	canonical	3	76	junction_7	67.3163009604657	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-17	NA	73326535	73333751	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332626_73332710_73332789_73332904
ES_00063123	chrX	+	513	2	FSM	ENSMUSG00000009995.18	ENSMUST00000153459.2	867	2	354	0	-1	0	multi-exon	FALSE	canonical	3	226	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTACCCTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	73331624	73332215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73331706_73331783
ES_00063124	chrX	+	2757	9	FSM	ENSMUSG00000015291.11	ENSMUST00000149391.8	2746	9	-11	0	0	0	multi-exon	FALSE	canonical	3	728	junction_6	47.4656125526681	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCCTGGCTCTTTAGGT	6206	False	NA	11	True	AATAAA	-12	NA	73348861	73355464	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243
ES_00063127	chrX	+	806	5	FSM	ENSMUSG00000031398.14	ENSMUST00000152376.2	806	5	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	1.92028643696715	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGATAAGCCTCCTAGC	NA	False	NA	NA	False	NA	NA	NA	73377931	73379445	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73377955_73378037_73378195_73378278_73378379_73378648_73379105_73379375
ES_00063128	chrX	+	749	3	FSM	ENSMUSG00000031398.14	ENSMUST00000139323.2	749	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCTCACTTCCCGTGA	NA	False	NA	NA	False	NA	NA	NA	73378837	73379942	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73379105_73379375_73379798_73379882
ES_00063130	chrX	+	600	3	FSM	ENSMUSG00000031398.14	ENSMUST00000148726.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGAGGAATGTCCGGGG	NA	False	NA	NA	False	NA	NA	NA	73381954	73382765	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73382208_73382295_73382553_73382675
ES_00063131	chrX	+	6710	11	NNC	ENSMUSG00000004221.17	novel	3332	10	NA	NA	0	66	at_least_one_novel_splicesite	FALSE	non_canonical	1	9	junction_10	32.7507251828108	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCACAACCCTTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	73473327	73497526	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_73473428_73476410_73476613_73477408_73477621_73480769_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822_73496138_73496342
ES_00063132	chrX	+	1586	2	ISM	ENSMUSG00000081804.2	ENSMUST00000117501.2	782	9	5451	-325	5451	325	3prime_fragment	FALSE	canonical	3	24	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGACCCATTTTTCTGTGC	NA	False	NA	NA	False	AATAAA	-3	NA	73701735	73703417	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_73702922_73703017
ES_00063133	chrX	+	401	5	NNC	ENSMUSG00000083847.2	novel	658	8	NA	NA	14	-3693	at_least_one_novel_splicesite	FALSE	canonical	3	263	junction_3	49.3381191372351	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGCTTTAAAGGAGTCCA	1869	False	NA	NA	False	AAGAAA	-5	NA	73739666	73743989	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_73739759_73740571_73740642_73741555_73741591_73742969_73743088_73743903
ES_00063134	chrX	+	994	4	NNC	ENSMUSG00000083847.2	novel	658	8	NA	NA	7784	248280	at_least_one_novel_splicesite	TRUE	canonical	3	314	junction_1	266.701247757778	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGTCATTTAATTGCA	9639	False	NA	33	True	AATAAA	-25	NA	73747436	73995962	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_73747533_73747625_73748272_73964516_73964657_73995850
ES_00063135	chrX	+	365	4	NNC	ENSMUSG00000084066.2	novel	646	7	NA	NA	-941	-6070	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	30.7281991373107	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGATGTGGAGGGAATT	4342	False	NA	NA	False	NA	NA	NA	73769893	73771677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_73770018_73770333_73770381_73770803_73770932_73771611
ES_00063137	chrX	+	911	5	FSM	ENSMUSG00000031403.15	ENSMUST00000135389.8	898	5	-13	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	722.092921652054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTTCCCATGAGGTGGTA	NA	False	NA	NA	False	NA	NA	NA	74139691	74142403	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368
ES_00063140	chrX	+	783	1	FSM	ENSMUSG00000080254.5	ENSMUST00000116535.3	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGGTTCAAGCAGAACAA	NA	False	NA	NA	False	NA	NA	NA	74187293	74188076	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74187300_74188100
ES_00063142	chrX	+	495	5	FSM	ENSMUSG00000031201.18	ENSMUST00000133781.8	479	5	-16	0	0	0	multi-exon	FALSE	canonical	1	13	junction_1	433.857407450881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTATGACAGAGATGTT	NA	False	NA	NA	False	AAAAAG	-7	NA	74460305	74481597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74460448_74466384_74466505_74479070_74479159_74479711_74479801_74481541
ES_00063143	chrX	+	1053	10	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	1700	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_1	470.546726927541	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGGTCATGGTATTT	NA	False	NA	14	True	NA	NA	NA	74460305	74499307	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74460448_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499157
ES_00063145	chrX	+	208	1	FSM	ENSMUSG00000082551.2	ENSMUST00000121699.2	273	1	39	26	39	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAACATTTCAAAATCTA	8269	False	NA	NA	False	NA	NA	NA	74749053	74749261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74749100_74749300
ES_00063147	chrX	+	1068	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAAAACAGAAACGGC	NA	False	NA	NA	False	NA	NA	NA	79500347	79501415	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_79500300_79501400
ES_00063150	chrX	+	236	1	FSM	ENSMUSG00000081167.2	ENSMUST00000121800.2	454	1	96	122	96	-122	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAGAACGACCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	88002918	88003154	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_88002900_88003200
ES_00063152	chrX	+	261	1	FSM	ENSMUSG00000081960.4	ENSMUST00000117902.2	919	1	115	543	115	-543	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCATGATGGAGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	90669115	90669376	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_90669100_90669400
ES_00063153	chrX	+	1235	4	FSM	ENSMUSG00000043929.17	ENSMUST00000113908.8	1235	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	24.3447461820136	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278532	93297669	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93278732_93278826_93279027_93296020_93296733_93297545
ES_00063154	chrX	+	7961	1	FSM	ENSMUSG00000073062.4	ENSMUST00000101388.4	5619	1	84	-2426	84	2426	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGACCCATGGAGAACAG	NA	False	NA	NA	False	NA	NA	NA	93768258	93776219	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93768300_93776200
ES_00063155	chrX	+	4075	3	FSM	ENSMUSG00000071719.3	ENSMUST00000096363.3	3909	3	-166	0	-166	0	multi-exon	FALSE	canonical	3	13	junction_2	4.5	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTCTCTTGGTGGATTT	NA	False	NA	NA	False	AATAAA	-15	NA	98864460	98892396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_98865533_98888994_98889167_98889565
ES_00063156	chrX	+	2231	2	ISM	ENSMUSG00000042903.9	ENSMUST00000062000.6	3162	3	3834	0	3541	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTTCTGGTTTCTGCT	7192	False	NA	21	True	AATAAA	-28	NA	100301967	100304479	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_100302840_100303120
ES_00063157	chrX	+	6746	46	FSM	ENSMUSG00000079487.12	ENSMUST00000087956.6	6746	46	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_39	30.7284884105938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100317865	100341071	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337228_100337398_100337477_100337542_100337619_100337693_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ES_00063161	chrX	+	2367	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	11	-1	combination_of_known_junctions	FALSE	canonical	3	397	junction_1	981.218107867263	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTGTGCTGTTTTTTT	NA	False	NA	19	True	ATTAAA	-20	NA	100473351	100492196	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ES_00063163	chrX	+	9151	39	NNC	ENSMUSG00000031314.19	novel	7210	38	NA	NA	-6799	281	intron_retention	FALSE	non_canonical	0	0	junction_1	70.2809606856868	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCCTCCCACCC	NA	False	NA	NA	False	NA	NA	NA	100569540	100644921	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_100571292_100576430_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584428_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
ES_00063164	chrX	+	208	2	Intergenic	novelGene_4425	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATTCTCTAAGCTCTGC	NA	False	NA	NA	False	AAAAAG	-3	NA	100623647	100627166	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_100623704_100627014
ES_00063165	chrX	+	6674	19	NNC	ENSMUSG00000034160.14	novel	3521	17	NA	NA	-23035	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	143.157698162585	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	4181	False	NA	15	True	AATAAA	-20	NA	100660630	100727957	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_100660658_100697213_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ES_00063167	chrX	+	8755	21	NIC	ENSMUSG00000034160.14	novel	5384	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	215	junction_1	109.796356952314	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683713	100727957	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ES_00063168	chrX	+	4943	6	NNC	ENSMUSG00000118478.2	novel	546	5	NA	NA	-11183	-18232	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	22.4641937313584	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGCAGTGGATGGCTCT	9259	False	NA	NA	False	NA	NA	NA	100739442	100752632	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_100739530_100743172_100743346_100744532_100744567_100747004_100747088_100747884_100751938_100752119
ES_00063169	chrX	+	737	1	FSM	ENSMUSG00000084284.2	ENSMUST00000121768.2	523	1	7	-221	7	221	mono-exon	FALSE	NA	NA	NA	NA	NA	766	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGAGCCACTATGCCTGC	NA	False	NA	NA	False	AATAAA	-38	NA	100812147	100812884	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100812100_100812900
ES_00063170	chrX	+	2812	5	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-47	0	intron_retention	FALSE	canonical	3	236	junction_3	18.7949461292125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838214	100842244	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ES_00063172	chrX	+	323	1	Intergenic	novelGene_4429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAATAAGTAAATT	NA	False	NA	NA	False	AATAAA	-38	NA	100868530	100868853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_100868500_100868900
ES_00063174	chrX	+	3018	7	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-52	0	intron_retention	FALSE	canonical	3	157	junction_5	15.0959891656323	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846516	101853548	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ES_00063175	chrX	+	1425	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	77	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	56.4623768539724	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846645	101853548	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_101846789_101848252_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ES_00063178	chrX	+	505	1	FSM	ENSMUSG00000083502.2	ENSMUST00000119451.2	455	1	48	-98	48	98	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102530587	102531092	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_102530600_102531100
ES_00063181	chrX	+	700	6	NNC	ENSMUSG00000031226.14	novel	1239	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	559.074950252647	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123392	104160696	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104160432
ES_00063183	chrX	+	546	4	NNC	ENSMUSG00000031231.5	novel	1001	3	NA	NA	-3	75965	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4101.87916285532	997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAGGAAAAAGAAAACTT	NA	False	NA	NA	False	NA	NA	NA	105059302	105142021	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_105059477_105063184_105063310_105065351_105065562_105141984
ES_00063188	chrX	+	216	2	Intergenic	novelGene_4463	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGTCTCTTCTTAATCA	NA	False	NA	NA	False	NA	NA	NA	119161747	119176557	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_119161789_119176382
ES_00063189	chrX	+	1788	1	Intergenic	novelGene_4476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCAAAGATCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	125443052	125444840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_125443100_125444800
ES_00063190	chrX	+	3528	18	NIC	ENSMUSG00000034480.19	novel	8439	27	NA	NA	-3	418	combination_of_known_junctions	FALSE	canonical	1	3	junction_17	31.9870215895918	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAACATCGTCATCACT	NA	False	NA	NA	False	ATTAAA	-16	NA	128650550	128943697	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128942396
ES_00063192	chrX	+	4542	15	NIC	ENSMUSG00000031256.12	novel	4502	14	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	232.87177868115	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACCCTACTTAGAAATCT	NA	False	NA	11	True	AATAAA	-11	NA	132959964	132987567	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973163_132973224_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ES_00063194	chrX	+	8050	6	FSM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	-54	0	-54	0	multi-exon	FALSE	canonical	2	4	junction_2	2.44948974278318	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGATATTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-24	NA	133587213	133597506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133587387_133587896_133587975_133588765_133588856_133589198_133589282_133589568_133589654_133589965
ES_00063196	chrX	+	2307	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	59.4151495832502	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618683	133622657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
ES_00063197	chrX	+	2413	6	FSM	ENSMUSG00000033460.15	ENSMUST00000113199.8	2413	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	37.1020215082683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCACTGTCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	133618736	133622659	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620782
ES_00063198	chrX	+	2165	4	NNC	ENSMUSG00000033460.15	novel	2253	4	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	53.074371299987	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618756	133622657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_133618800_133619668_133619858_133620375_133620475_133620823
ES_00063199	chrX	+	655	1	FSM	ENSMUSG00000081972.2	ENSMUST00000122201.2	494	1	242	-403	242	403	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGTTGCCTGTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	133632561	133633216	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133632600_133633200
ES_00063200	chrX	+	3838	6	Fusion	ENSMUSG00000067360.13_ENSMUSG00000094004.8	novel	3673	5	NA	NA	0	0	multi-exon	TRUE	canonical	3	77	junction_4	42.6708331299027	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134203064	134284142	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134203188_134203385_134203513_134208081_134208382_134209685_134210271_134210847_134211722_134282313
ES_00063201	chrX	+	3828	6	Fusion	ENSMUSG00000067360.13_ENSMUSG00000094004.8	novel	3698	5	NA	NA	17	6	multi-exon	TRUE	canonical	0	0	junction_5	71.0025351660066	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGGTTCTTCGTGAA	NA	False	NA	NA	False	ATTAAA	-16	NA	134203081	134284148	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134203188_134203385_134203513_134208081_134208382_134209685_134210271_134210847_134211481_134282071
ES_00063202	chrX	+	3837	6	Fusion	ENSMUSG00000054994.3_ENSMUSG00000094004.8	novel	3677	5	NA	NA	26	161	multi-exon	TRUE	canonical	3	118	junction_5	43.4391528462515	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134274058	134405504	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134274160_134274357_134274485_134278675_134278976_134280276_134280862_134281437_134282034_134403376
ES_00063204	chrX	+	3829	6	Fusion	ENSMUSG00000054994.3_ENSMUSG00000096508.8	novel	3519	5	NA	NA	26	161	multi-exon	FALSE	canonical	3	42	junction_2	67.096944788865	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134334609	134405504	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_134334711_134334908_134335028_134339279_134339580_134340880_134341466_134342041_134342638_134403376
ES_00063208	chrX	+	5374	7	ISM	ENSMUSG00000043384.16	ENSMUST00000113144.8	5843	11	53351	4	-1504	4	3prime_fragment	FALSE	canonical	0	0	junction_1	59.1326193117358	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTGCCCCTTCACTGTA	9734	False	NA	14	True	AATAAA	-21	NA	134696832	134704219	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_134697086_134697697_134697787_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ES_00063209	chrX	+	3755	7	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	-4	1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	54.6669207311169	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGACCCTTCTTCACTT	NA	False	NA	NA	False	AATAAA	-21	NA	134739800	134745476	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
ES_00063210	chrX	+	3670	6	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	50.8196812268633	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCCTTCTTCACTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	134739854	134745479	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_134740012_134740493_134740622_134741141_134741219_134741601_134741674_134741969_134742053_134742326
ES_00063211	chrX	+	946	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-2775	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	4	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGACTTGATCATTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	135122014	135126849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_135122041_135125650_135125722_135126000
ES_00063218	chrX	+	1666	1	FSM	ENSMUSG00000083311.4	ENSMUST00000117081.2	966	1	23	-723	23	723	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACAAAATACCCATGGAA	NA	False	NA	NA	False	AATAAA	-33	NA	141080583	141082249	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_141080600_141082200
ES_00063220	chrX	+	232	2	Antisense	novelGene_ENSMUSG00000080922.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	89	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGATTTTTATTTTAT	4142	False	NA	NA	False	NA	NA	NA	143063252	143109873	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_+_143063287_143109675
ES_00063221	chrX	+	4571	26	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	-253	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_21	299.952273536975	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100546	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00063222	chrX	+	4649	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	-253	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	315.268023116839	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100546	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143152506_143152858_143156543
ES_00063223	chrX	+	4556	28	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	-253	51146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	273.474805303528	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTATGCTTTTCACTTT	NA	False	NA	NA	False	NA	NA	NA	143100546	143208592	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543_143157438_143208563
ES_00063224	chrX	+	4234	27	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_17	271.280995829462	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100839	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134776_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00063225	chrX	+	4355	27	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	-81	0	at_least_one_novel_splicesite	FALSE	canonical	3	126	junction_15	261.342494455617	361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100718	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133287_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00063226	chrX	+	4098	27	NNC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	1655	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	264.979356123449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143102673	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_143102703_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00063228	chrX	+	1968	7	NNC	ENSMUSG00000072930.4	novel	2028	7	NA	NA	-4790	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	7.22072634081149	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTATTTCTTTGTTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	146958929	147007699	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_146958969_146980956_146981083_146981801_146981882_146985542_146986502_146999377_146999460_147000265_147000316_147007067
ES_00063229	chrX	+	206	2	ISM	ENSMUSG00000079395.4	ENSMUST00000112788.4	1974	7	9457	22115	9457	-22115	internal_fragment	FALSE	canonical	3	13	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGAACACTAAGGGTT	NA	False	NA	NA	False	NA	NA	NA	147281401	147282327	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_147281528_147282247
ES_00063230	chrX	+	315	3	ISM	ENSMUSG00000096834.8	ENSMUST00000101186.10	2026	7	-17	22180	-17	-22180	5prime_fragment	FALSE	canonical	0	0	junction_1	6.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTGAACAATAAGGGTT	NA	False	NA	NA	False	NA	NA	NA	147446576	147464665	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_147446686_147463739_147463866_147464585
ES_00063232	chrX	+	772	3	ISM	ENSMUSG00000094885.8	ENSMUST00000177554.2	2028	7	31868	-1	31868	1	3prime_fragment	FALSE	canonical	1	1	junction_2	5	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTGTGTTTGTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	147912815	147921149	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_147912898_147913703_147913754_147920509
ES_00063233	chrX	+	968	4	ISM	ENSMUSG00000095082.2	ENSMUST00000112740.2	2026	7	25562	0	25562	0	3prime_fragment	TRUE	canonical	1	1	junction_3	4.32049379893857	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148750212	148767978	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_148750412_148759566_148759649_148760454_148760505_148767341
ES_00063236	chrX	+	2005	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_2	22.0756275863979	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371224	149426874	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_149371410_149371940_149372041_149372935_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ES_00063237	chrX	+	6410	5	FSM	ENSMUSG00000041245.14	ENSMUST00000133852.2	6410	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	2.12132034355964	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTATGTCACCTTATTAA	NA	False	NA	NA	False	AATAAA	-19	NA	150077515	150103148	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
ES_00063242	chrX	+	14953	83	NNC	ENSMUSG00000025261.19	novel	14579	83	NA	NA	157	4	intron_retention	TRUE	canonical	1	1	junction_1	164.017397620463	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTACTTTCTTTGTGT	NA	False	NA	8	True	AATAAA	-25	NA	150584035	150718417	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_150584363_150586171_150586566_150589271_150589404_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659877_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679558_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150691723_150691953_150692404_150692584_150692855_150692946_150693096_150693252_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706558_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ES_00063243	chrX	+	14837	85	NNC	ENSMUSG00000025261.19	novel	14579	83	NA	NA	30	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_45	160.581541298792	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATCCCAAGTAGTACTTT	NA	False	NA	0	True	AATAAA	-17	NA	150586372	150718409	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_150586566_150589715_150589857_150618219_150618289_150619217_150619326_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659877_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679561_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150689260_150689360_150689946_150690081_150690271_150690441_150691723_150691953_150692404_150692584_150692855_150692946_150693096_150693252_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ES_00063247	chrX	+	988	6	FSM	ENSMUSG00000025260.11	ENSMUST00000112617.4	992	6	4	0	4	0	multi-exon	FALSE	canonical	3	4	junction_3	696.467486678309	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784844	150787438	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786618_150786778_150786857_150786967_150787134
ES_00063249	chrX	+	3069	2	FSM	ENSMUSG00000071665.11	ENSMUST00000163801.2	3072	2	3	0	3	0	multi-exon	FALSE	canonical	3	3	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGAGTTGATGTTTCTT	37	False	NA	NA	False	AATAAA	-11	NA	151909895	151915857	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_151909940_151912832
ES_00063250	chrX	+	7563	8	FSM	ENSMUSG00000041649.14	ENSMUST00000039545.5	4407	8	-28	-3128	-28	2793	multi-exon	FALSE	canonical	2	12	junction_1	60.7816433083649	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGGTTTTGTGTTTAAT	NA	False	NA	18	True	AATAAA	-19	NA	152142580	152181921	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152142706_152142837_152142961_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ES_00063251	chrX	+	799	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	-24	0	-7	0	multi-exon	FALSE	canonical	3	163	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGACCCCTTTCTT	NA	False	NA	NA	False	AGTAAA	-20	NA	152506598	152512184	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_152506934_152508700_152508838_152511857
ES_00063252	chrX	+	502	1	FSM	ENSMUSG00000082197.2	ENSMUST00000122420.2	986	1	305	179	305	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAGTGTTAGTCTAGCA	NA	False	NA	NA	False	TTTAAA	-2	NA	153557753	153558255	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_153557800_153558300
ES_00063253	chrX	+	1055	2	Genic_Genomic	ENSMUSG00000082560.2	novel	702	1	NA	NA	-990	211	multi-exon	FALSE	canonical	3	18	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGTAACCAATGAATATCT	NA	False	NA	NA	False	NA	NA	NA	153967684	153969587	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_153967809_153968656
ES_00063254	chrX	+	720	2	FSM	ENSMUSG00000025287.16	ENSMUST00000134662.2	447	2	-30	-243	-30	243	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTTTGATAAGCAGCAA	NA	False	NA	NA	False	NA	NA	NA	154045408	154046821	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_154045671_154046363
ES_00063255	chrX	+	593	1	FSM	ENSMUSG00000083841.2	ENSMUST00000122451.2	910	1	402	-85	402	85	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAAACATTGT	NA	False	NA	NA	False	AATAAA	-16	NA	156212814	156213407	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_156212800_156213400
ES_00063257	chrX	+	228	1	Intergenic	novelGene_4508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	158179594	158179822	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_158179600_158179800
ES_00063260	chrX	+	3356	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_5	151.634892079191	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTGAGAGCATTCTTT	NA	False	NA	22	True	AATAAA	-35	NA	158315669	158376076	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340441_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ES_00063261	chrX	+	4164	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_9	192.349219447915	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315714	158376077	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158350362_158350914_158351011_158357940_158358094_158374327_158374354_158375066
ES_00063264	chrX	+	241	4	FSM	ENSMUSG00000031298.16	ENSMUST00000123450.8	531	4	-16	306	-12	-306	multi-exon	FALSE	canonical	1	1	junction_3	4.24264068711928	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTTCAAATTATTTCTG	NA	False	NA	NA	False	TTTAAA	-9	NA	159173707	159244377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159173746_159213345_159213391_159221190_159221310_159244338
ES_00063265	chrX	+	3926	34	NIC	ENSMUSG00000031295.14	novel	3947	34	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	18.7602436052563	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285176	159374137	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_159285289_159285748_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ES_00063266	chrX	+	3950	34	NNC	ENSMUSG00000031295.14	novel	3947	34	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	19.0057262648391	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285185	159374137	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159285289_159285715_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ES_00063267	chrX	+	4348	33	FSM	ENSMUSG00000031295.14	ENSMUST00000112380.9	4341	33	-7	0	-7	0	multi-exon	FALSE	canonical	2	5	junction_32	18.8167302137619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGCCTCTCTCCTGACAG	NA	False	NA	NA	False	AATAAA	-22	NA	159285422	159381874	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159381463
ES_00063269	chrX	+	4508	26	NNC	ENSMUSG00000000037.18	novel	2931	23	NA	NA	-41	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	106.76520781603	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACAGCAATTAACAGCT	NA	False	NA	2	True	AATAAA	-11	NA	159900147	160041192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159900321_159904019_159904085_159927757_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160011672_160011757_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00063270	chrX	+	4503	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14659	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_17	112.591125760426	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGCCTTGGATGTTATT	4690	False	NA	19	True	AATAAA	-28	NA	159921922	160041209	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00063271	chrX	+	4449	25	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	-5596	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_18	123.006407917998	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACAGCAATTAACAGCT	NA	False	NA	2	True	AATAAA	-11	NA	159940149	160041192	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159940262_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160013086_160013171_160014395_160014480_160017608_160017693_160020487_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
ES_00063272	chrX	+	4520	11	ISM	ENSMUSG00000108981.2	ENSMUST00000207320.2	5010	15	25861	-2	25861	2	3prime_fragment	FALSE	canonical	3	10	junction_1	4.67011777153425	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATATTTTGTTTTGT	NA	False	NA	NA	False	AATAAA	-31	NA	160107235	160149250	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
ES_00063276	chrX	+	552	1	FSM	ENSMUSG00000084022.2	ENSMUST00000121443.2	686	1	225	-91	225	91	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAGTAAGTTCCAGGACA	NA	False	NA	NA	False	NA	NA	NA	161628058	161628610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_161628100_161628600
ES_00063277	chrX	+	3357	19	NIC	ENSMUSG00000031360.15	novel	1665	15	NA	NA	34	4	combination_of_known_junctions	TRUE	canonical	2	23	junction_1	48.2283982220199	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGACTTGTACTTTAAC	NA	False	NA	NA	False	AATAAA	-26	NA	161684274	161815508	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_161684391_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ES_00063278	chrX	+	2038	18	NIC	ENSMUSG00000031360.15	novel	3353	19	NA	NA	-32	20	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	53.6755600245087	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTGTTTTCTCCAGG	NA	False	NA	31	True	ATTAAA	-37	NA	161684568	161814335	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_161684744_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ES_00063280	chrX	+	1499	7	FSM	ENSMUSG00000031379.14	ENSMUST00000123343.2	2228	7	0	729	0	-729	multi-exon	FALSE	canonical	0	0	junction_6	131.536644661816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGCTTCAAAAGCCCTCA	NA	False	NA	NA	False	NA	NA	NA	163052568	163092044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163090199_163090318_163091281
ES_00063281	chrX	+	337	1	FSM	ENSMUSG00000077542.3	ENSMUST00000104354.3	130	1	11	-218	11	218	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAACTGCCTCGTGGAG	NA	False	NA	NA	False	NA	NA	NA	163066102	163066439	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163066100_163066400
ES_00063283	chrX	+	5901	4	FSM	ENSMUSG00000031381.17	ENSMUST00000155849.2	3321	4	-724	-1856	-724	0	multi-exon	FALSE	canonical	3	227	junction_1	22.7596133534821	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163207781	163216907	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163211061_163211535_163211669_163211806_163212014_163214625
ES_00063284	chrX	+	1209	7	FSM	ENSMUSG00000031384.3	ENSMUST00000033756.3	1139	7	-68	-2	-68	2	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGGTTTCTTTTGAT	NA	False	NA	NA	False	AATAAA	-19	NA	163289254	163322750	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163289583_163297924_163298005_163312403_163312512_163314577_163314729_163316452_163316588_163318365_163318558_163322535
ES_00063285	chrX	+	977	2	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-2122	-3478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAGAAGTTTGCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	164959275	164960310	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_164959997_164960054
ES_00063286	chrX	+	2259	3	FSM	ENSMUSG00000079317.11	ENSMUST00000154573.8	2366	3	0	107	0	-107	multi-exon	FALSE	canonical	3	242	junction_2	4	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCACACAGATGCCCTAG	NA	False	NA	NA	False	NA	NA	NA	165223771	165234866	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_165223836_165229786_165229899_165232783
ES_00063287	chrX	+	1294	4	FSM	ENSMUSG00000079317.11	ENSMUST00000112192.8	1294	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	114.126635317479	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGGTCATTTGATG	NA	False	NA	7	True	AATAAA	-12	NA	165223771	165236134	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_165223836_165229786_165229899_165232783_165232900_165235132
ES_00063288	chrX	+	1418	5	FSM	ENSMUSG00000079317.11	ENSMUST00000112194.2	1418	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	111.246067346221	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165228298	165236136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_165228370_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ES_00063289	chrX	+	1815	1	FSM	ENSMUSG00000081137.4	ENSMUST00000119987.2	1815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGTAGTACACAGGTCA	NA	False	NA	NA	False	NA	NA	NA	168151184	168152999	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_168151200_168153000
ES_00063290	chrX	+	735	4	NNC	ENSMUSG00000095562.9	novel	583	3	NA	NA	-401	206	intron_retention	FALSE	non_canonical	0	0	junction_3	204.783354358264	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCGACCCTCGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	168792253	168802001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_168792487_168792588_168792759_168793669_168793774_168801773
ES_00063291	chrX	+	1859	4	NNC	ENSMUSG00000095562.9	novel	597	3	NA	NA	-401	206	intron_retention	TRUE	non_canonical	2	138	junction_2	159.047861419832	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCGACCCTCGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	168792253	168802001	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_168792487_168792588_168793304_168793480_168794060_168801669
ES_00063292	chrX	+	1490	4	NNC	ENSMUSG00000095562.9	novel	441	3	NA	NA	-401	210	intron_retention	FALSE	non_canonical	2	138	junction_2	181.556847540623	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCTCGCCCCGCTGGA	NA	False	NA	NA	False	NA	NA	NA	168792253	168802005	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_168792487_168792588_168793304_168793480_168793885_168801867
ES_00063296	chrX	-	8399	13	NNC	ENSMUSG00000004317.15	novel	8390	12	NA	NA	0	4347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.1986841535707	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCACTTGGGAGGCAGAG	NA	False	NA	NA	False	AAAACA	-36	NA	7054912	7015701	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7015754_7020050_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
ES_00063297	chrX	-	651	3	NNC	ENSMUSG00000063018.7	novel	885	4	NA	NA	-6599	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	25.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7295826	7278341	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7278772_7290383_7290524_7295745
ES_00063298	chrX	-	5722	17	FSM	ENSMUSG00000103436.2	ENSMUST00000126170.4	5727	17	0	5	0	-5	multi-exon	TRUE	canonical	1	3	junction_3	90.1696318058358	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAGCAAAATAAAACACAAT	NA	False	NA	NA	False	AATAAA	-11	NA	7471620	7424845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7427123_7430100_7430181_7430474_7430528_7460264_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462853_7462969_7463972_7465396_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
ES_00063300	chrX	-	1250	6	FSM	ENSMUSG00000031147.9	ENSMUST00000115695.4	1342	6	93	-1	93	1	multi-exon	TRUE	canonical	0	0	junction_3	0.489897948556636	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTTGCTAGGTGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	7547235	7540863	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7541431_7542079_7542249_7542338_7542576_7543358_7543442_7546138_7546286_7547188
ES_00063301	chrX	-	3658	10	FSM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_9	11.4385097881166	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGAGTCTCTGTCTG	NA	False	NA	-4	True	AATAAA	-14	NA	7607580	7597952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7607450
ES_00063303	chrX	-	4352	28	ISM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	122	0	0	0	intron_retention	FALSE	canonical	3	320	junction_26	43.7256065642336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGCTTTTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	7814006	7796358	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363
ES_00063304	chrX	-	894	3	FSM	ENSMUSG00000031161.16	ENSMUST00000153788.2	894	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	7	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGGCTTCACCTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	7800724	7797793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7798199_7798301_7798477_7800410
ES_00063308	chrX	-	1855	6	FSM	ENSMUSG00000031162.15	ENSMUST00000033502.14	1902	6	42	5	42	-5	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGAGCGGTGTCTATGG	NA	False	NA	NA	False	AATAAA	-18	NA	7834107	7825503	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7826368_7826821_7826948_7828162_7828309_7828409_7828788_7829241_7829481_7834005
ES_00063309	chrX	-	2707	4	FSM	ENSMUSG00000039231.19	ENSMUST00000115636.4	2707	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	47.4013595679374	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAATCCAAAACATTA	9911	False	NA	NA	False	AATAAA	-16	NA	7940968	7933647	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7935360_7936826_7937490_7938561_7938708_7940782
ES_00063311	chrX	-	3782	10	NNC	ENSMUSG00000031166.14	novel	4183	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	17	junction_1	9.7410927974683	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCCTCTCTTCATTTG	7218	False	NA	1	True	AATAAA	-21	NA	7998750	7989539	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7991381_7991484_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
ES_00063312	chrX	-	3761	10	NIC	ENSMUSG00000031166.14	novel	1822	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_8	14.4025032117834	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCCTCTCTTCATTTG	6906	False	NA	1	True	AATAAA	-21	NA	7999062	7989539	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997831_7998525_7998606_7999008
ES_00063313	chrX	-	753	6	FSM	ENSMUSG00000031166.14	ENSMUST00000153839.2	774	6	21	0	-1	0	multi-exon	FALSE	canonical	3	9	junction_5	11.5412304370028	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGACTTCGCCTGGTCCC	6905	False	NA	NA	False	NA	NA	NA	7999063	7995379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525_7998606_7999008
ES_00063314	chrX	-	1319	8	FSM	ENSMUSG00000031167.17	ENSMUST00000129947.9	1319	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	511.677353696364	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	6562	False	NA	NA	False	ATTAAA	-38	NA	8011935	8008710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010413_8010685_8010811_8010919_8011193_8011312_8011876
ES_00063316	chrX	-	2571	5	FSM	ENSMUSG00000039201.11	ENSMUST00000133093.2	2560	5	0	-11	0	0	multi-exon	FALSE	canonical	3	121	junction_3	12.051970793194	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042197	8020710	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8022306_8022554_8023018_8038976_8039132_8040439_8040550_8041949
ES_00063317	chrX	-	1622	12	NIC	ENSMUSG00000031169.14	novel	1839	13	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	20.0602398575016	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	2012	False	NA	-2	True	AATAAA	-17	NA	8072716	8060088	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8071803_8071973_8072613
ES_00063318	chrX	-	495	2	Antisense	novelGene_ENSMUSG00000083714.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	330	junction_1	0	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTGCATGAACATCTCTG	NA	False	NA	NA	False	NA	NA	NA	8910664	8900092	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_8900381_8910457
ES_00063319	chrX	-	355	5	FSM	ENSMUSG00000015340.11	ENSMUST00000170885.2	390	5	35	0	35	0	multi-exon	FALSE	canonical	2	2	junction_2	1.22474487139159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACAGGAACCTCACTTT	NA	False	NA	NA	False	NA	NA	NA	9353975	9323256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_9323284_9331882_9331994_9333321_9333418_9335444_9335544_9353953
ES_00063320	chrX	-	2567	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	172	0	10	0	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGTTATTGTACTTTG	NA	False	NA	NA	False	AATGAA	-20	NA	10082987	10024610	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ES_00063322	chrX	-	202	1	FSM	ENSMUSG00000080811.2	ENSMUST00000117403.2	123	1	0	-79	0	79	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCCTTTATTATTTTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	11550363	11550161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_11550200_11550400
ES_00063323	chrX	-	6929	14	FSM	ENSMUSG00000040363.16	ENSMUST00000115512.9	6887	14	-34	-8	-34	8	multi-exon	FALSE	canonical	3	23	junction_10	50.3691696818388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTGCATCCTTTGTAT	NA	False	NA	2	True	AATAAA	-27	NA	11946826	11902970	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ES_00063324	chrX	-	6784	14	FSM	ENSMUSG00000040363.16	ENSMUST00000124033.8	6785	14	0	1	0	-1	multi-exon	FALSE	canonical	3	23	junction_10	49.0641410892762	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATTGAAGTACTTTGCAT	NA	False	NA	-7	True	AATAAA	-18	NA	11946792	11902979	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ES_00063326	chrX	-	6304	15	NIC	ENSMUSG00000040363.16	novel	6839	15	NA	NA	-134	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_14	48.7835703356558	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	12026728	11902978	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_12026527
ES_00063327	chrX	-	272	1	FSM	ENSMUSG00000081461.4	ENSMUST00000119630.2	345	1	-48	121	-48	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCAATAAAATTGAACTGG	NA	False	NA	NA	False	AATAGA	-43	NA	12323517	12323245	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_12323200_12323500
ES_00063328	chrX	-	3359	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	-86	25	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	81.2617512869506	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCGCATGAATAACACAC	NA	False	NA	22	True	NA	NA	NA	12539993	12521092	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_12523275_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ES_00063329	chrX	-	5120	29	NIC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	-77	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	19.2046909129313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCATCGCTGCTTTTTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	12628389	12545987	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ES_00063330	chrX	-	2312	15	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68059	22815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.6724798542303	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCACTGCAAAGGTCTAAG	NA	False	NA	NA	False	NA	NA	NA	17117548	16975472	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_16975500_16998286_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ES_00063331	chrX	-	1032	4	FSM	ENSMUSG00000025040.14	ENSMUST00000177213.8	1032	4	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	16.9901932498329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTATGGCTGATTTTTT	NA	False	NA	-22	True	ATTAAA	-18	NA	17437880	17423762	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541
ES_00063332	chrX	-	601	4	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	333	33510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1070.67206308312	3320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAGAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	20483525	20448054	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_20448083_20481566_20481782_20481952_20482084_20483298
ES_00063333	chrX	-	3213	13	FSM	ENSMUSG00000037217.16	ENSMUST00000081893.7	3209	13	0	-4	0	0	multi-exon	FALSE	canonical	1	4	junction_1	14.1330483461833	3394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGCTTCTTGGTAAAG	NA	False	NA	2	True	AATAAA	-21	NA	20787157	20726749	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20727849_20728737_20729330_20729421_20729510_20729822_20729970_20730999_20731103_20731193_20731269_20731357_20731501_20732084_20732148_20773315_20773406_20774189_20774347_20775575_20775668_20775763_20775822_20786651
ES_00063334	chrX	-	642	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	0	-6	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828239	20818161	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
ES_00063335	chrX	-	488	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATAGTCCTTTTTTCC	NA	False	NA	-9	True	ATTAAA	-19	NA	20828239	20818162	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ES_00063337	chrX	-	3185	5	NNC	ENSMUSG00000054737.12	novel	3160	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	19.3261480900877	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATATTGTATTCCTTTAA	3253	False	NA	-5	True	TTTAAA	-1	NA	20928274	20895181	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_20897892_20902575_20902753_20902866_20903012_20926741_20926797_20928176
ES_00063338	chrX	-	3299	11	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	0	77887	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.294368761008	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTCATGAGACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	23231292	23007622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23007651_23085526_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
ES_00063339	chrX	-	3368	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3717	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_6	415.817192405509	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23185135	23085524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23184851
ES_00063340	chrX	-	3210	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3397	15	3368	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227924	23085524	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
ES_00063341	chrX	-	3264	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	126	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_8	350.582350347247	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23231166	23085524	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231011
ES_00063342	chrX	-	3128	8	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_7	375.902505814408	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23231304	23085524	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23231194
ES_00063343	chrX	-	929	9	FSM	ENSMUSG00000095887.8	ENSMUST00000180207.8	907	9	0	-22	0	22	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAAAGGCTCTTTAATC	NA	False	NA	NA	False	AATAAA	-36	NA	28735118	28712214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_28712411_28712729_28712829_28715278_28715361_28723560_28723625_28723933_28724060_28727151_28727187_28727725_28727793_28733400_28733524_28734981
ES_00063344	chrX	-	410	1	FSM	ENSMUSG00000081159.2	ENSMUST00000118217.2	606	1	204	-8	204	8	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACTGTGCCATAGATAGA	NA	False	NA	NA	False	NA	NA	NA	35477578	35477168	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_35477200_35477600
ES_00063347	chrX	-	1143	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115249.10	1145	7	3	-1	3	1	multi-exon	FALSE	canonical	1	3	junction_1	85.4393872221055	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGAGTCGGGTGTGG	NA	False	NA	NA	False	ATTAAA	-15	NA	36127888	36087388	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36087823_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ES_00063348	chrX	-	357	1	FSM	ENSMUSG00000084265.2	ENSMUST00000118985.2	157	1	-52	-148	-52	148	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAATTAATATTTT	NA	False	NA	NA	False	AATAAA	-21	NA	36102998	36102641	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36102600_36103000
ES_00063350	chrX	-	4560	11	FSM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	116	-3	-49	3	multi-exon	FALSE	canonical	2	7	junction_2	18.537529500988	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTGGTGTTCTTCA	NA	False	NA	NA	False	ATTAAA	-17	NA	36253193	36177095	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36180199_36184021_36184067_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ES_00063351	chrX	-	2042	10	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	10	-799	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	16.9538225414044	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGATTCATAGG	NA	False	NA	NA	False	AATAAA	-20	NA	36253134	36179482	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ES_00063354	chrX	-	209	2	Intergenic	novelGene_4350	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	92	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCTTGGGGATCACCAC	NA	False	NA	NA	False	NA	NA	NA	36387465	36384952	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_36385111_36387414
ES_00063355	chrX	-	801	4	FSM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	0	-6	0	4	multi-exon	FALSE	canonical	2	5	junction_2	7.03957069398096	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36825123	36820763	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_36820996_36822809_36822856_36824438_36824851_36825012
ES_00063356	chrX	-	2870	5	FSM	ENSMUSG00000016534.16	ENSMUST00000136817.2	2870	5	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_1	31.1247489949718	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAGAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	37532027	37518758	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901
ES_00063357	chrX	-	217	2	FSM	ENSMUSG00000016534.16	ENSMUST00000144663.2	2633	2	0	2416	0	-2416	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTGTATCTGAGCTT	NA	False	NA	NA	False	NA	NA	NA	37545291	37544182	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37544234_37545125
ES_00063358	chrX	-	859	1	FSM	ENSMUSG00000085611.4	ENSMUST00000117113.2	579	1	-68	-212	-68	212	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTTTTTTGTTTTGTT	NA	False	NA	NA	False	AAGAAA	-17	NA	37775115	37774256	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_37774300_37775100
ES_00063359	chrX	-	7675	39	NIC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	10	-3	combination_of_known_junctions	FALSE	canonical	2	42	junction_7	32.9462859247091	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTGTGTATATTGTTA	NA	False	NA	-2	True	AATAAA	-23	NA	41000753	40883870	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901453_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ES_00063360	chrX	-	7619	39	FSM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	0	3	0	-3	multi-exon	FALSE	canonical	2	149	junction_20	23.0069843664894	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTGTGTATATTGTTA	NA	False	NA	-2	True	AATAAA	-23	NA	41000778	40883870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ES_00063361	chrX	-	7625	39	NNC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	37.7880900640998	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTGTATATTGTTACT	NA	False	NA	0	True	AATAAA	-25	NA	41000778	40883868	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_40886657_40891823_40891874_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ES_00063362	chrX	-	3784	24	NIC	ENSMUSG00000031099.17	novel	3991	24	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	5.5376354545258	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTCACTTCTTTGTTGC	NA	False	NA	NA	False	ATTAAA	-19	NA	46981467	46898509	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_46898998_46900034_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
ES_00063363	chrX	-	6860	6	ISM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	32278	4	32278	-1	intron_retention	FALSE	canonical	3	72	junction_5	5.42586398650022	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGTGTTCAGATTCCAA	NA	False	NA	-2	True	NA	NA	NA	47510768	47499926	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_47504324_47505523_47505902_47506747_47506941_47507031_47507116_47507884_47508077_47509152
ES_00063365	chrX	-	219	2	Intergenic	novelGene_4363	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	666	junction_1	0	645	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTATTTCCATCAAGAA	NA	False	NA	NA	False	AGTAAA	-7	NA	47596537	47560984	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_47561150_47596483
ES_00063366	chrX	-	3364	15	FSM	ENSMUSG00000036932.15	ENSMUST00000143466.8	3364	15	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_8	81.8778333362378	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602303	47563820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ES_00063367	chrX	-	4095	21	NIC	ENSMUSG00000036916.14	novel	4024	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	27.0766966227419	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	43	True	AATAAA	-21	NA	47683268	47630502	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47682390_47682476_47683240
ES_00063368	chrX	-	3933	19	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-12	-4	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	20.1286755711078	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACAGATTGCATCATCTA	NA	False	NA	39	True	AATAAA	-17	NA	47683341	47630506	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
ES_00063372	chrX	-	1730	5	FSM	ENSMUSG00000031111.17	ENSMUST00000114891.2	1761	5	15	16	1	-16	multi-exon	FALSE	canonical	2	4	junction_2	1.08972473588517	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGTTAATAATTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	48886611	48881858	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
ES_00063373	chrX	-	482	3	FSM	ENSMUSG00000031111.17	ENSMUST00000135492.2	417	3	1	-66	1	66	multi-exon	FALSE	canonical	2	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCATCTGGGTGGGTTAG	NA	False	NA	NA	False	NA	NA	NA	48886611	48883755	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_48884027_48884155_48884285_48886529
ES_00063374	chrX	-	877	5	FSM	ENSMUSG00000085396.8	ENSMUST00000205059.3	884	5	0	7	0	0	multi-exon	FALSE	canonical	3	24	junction_1	14.3592304807744	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGAGTCATTTCGTAAA	NA	False	NA	-7	True	AATAAA	-17	NA	49653760	49644627	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_49644807_49647107_49647262_49649685_49649884_49651556_49651832_49653689
ES_00063375	chrX	-	1754	5	FSM	ENSMUSG00000085396.8	ENSMUST00000204991.3	1754	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	39.7075244758471	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGGAAACCGAAAATTTA	NA	False	NA	NA	False	TATAAA	-14	NA	49659076	49647014	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_49647262_49651556_49651832_49653689_49653845_49656416_49656571_49658153
ES_00063376	chrX	-	468	2	FSM	ENSMUSG00000085396.8	ENSMUST00000203672.2	490	2	22	0	22	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTGTTAAATAGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	49649883	49647223	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_49647262_49649453
ES_00063377	chrX	-	6277	24	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_16	33.5349604559008	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTTGATGTGAAGATTG	NA	False	NA	-13	True	AATAAA	-14	NA	49724174	49652005	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49684337_49684493_49685306_49685449_49687010_49687166_49689620_49689776_49692247_49692403_49694952_49695040_49697392_49697485_49697563_49697692_49701581_49701728_49704237_49704393_49715313_49715387_49716083_49716187_49719767_49719873_49723821
ES_00063378	chrX	-	6359	23	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_14	32.9054807160908	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTTGATGTGAAGATTG	NA	False	NA	-13	True	AATAAA	-14	NA	49724174	49652005	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669215_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49687010_49687166_49689620_49689776_49692247_49692403_49694952_49695040_49697392_49697485_49697563_49697692_49700981_49701119_49701581_49701728_49704237_49704393_49715313_49715387_49716083_49716187_49719767_49719873_49723821
ES_00063379	chrX	-	2134	8	NNC	ENSMUSG00000036109.18	novel	2243	8	NA	NA	157	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	8.22638859936455	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTACGGAGAGTAGCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	50294552	50208962	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294438
ES_00063381	chrX	-	1505	5	NIC	ENSMUSG00000031118.9	novel	1232	4	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	35.6195171219375	505	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTGCTCCGTTTCAT	NA	False	NA	-1	True	CATAAA	-18	NA	51061654	51057570	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_51058747_51059091_51059163_51059359_51059477_51059858_51059953_51061607
ES_00063382	chrX	-	2924	11	NNC	ENSMUSG00000031119.5	novel	2651	9	NA	NA	-2057	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_10	105.604971473885	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTGGAAAATTTCCATT	NA	False	NA	-19	True	ATTAAA	-15	NA	51256186	51141897	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492_51254252_51255108_51255204_51256130
ES_00063385	chrX	-	1161	1	FSM	ENSMUSG00000065613.3	ENSMUST00000083679.3	91	1	-559	-511	-559	511	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGGTTTCTTTTTTCTT	9251	False	NA	NA	False	AATAAA	-23	NA	51831364	51830203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_51830200_51831400
ES_00063386	chrX	-	770	2	FSM	ENSMUSG00000087365.8	ENSMUST00000151099.2	770	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTAGTTGTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	52146067	52145069	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_52145647_52145874
ES_00063387	chrX	-	2273	7	NNC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	-10	0	intron_retention	FALSE	canonical	1	1	junction_6	42.6161810688017	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	-4	True	CATAAA	-18	NA	52459389	52433474	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52449263_52449344_52459298
ES_00063388	chrX	-	2316	7	NNC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	-10	0	intron_retention	FALSE	canonical	1	3	junction_2	42.1056871323683	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	-4	True	CATAAA	-18	NA	52459389	52433474	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52434867_52436580_52436743_52440547_52440671_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ES_00063393	chrX	-	6031	31	NNC	ENSMUSG00000062949.14	novel	6044	30	NA	NA	-844	7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_30	19.765879692035	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCGAGTGTCTTGTTTTT	NA	False	NA	0	True	AATAAA	-21	NA	59450016	59268642	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995_59449095_59449961
ES_00063394	chrX	-	1534	1	FSM	ENSMUSG00000081729.2	ENSMUST00000119602.2	1933	1	234	165	234	-165	mono-exon	FALSE	NA	NA	NA	NA	NA	2099	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTCGAAAGGACAGTGA	NA	False	NA	NA	False	NA	NA	NA	59622250	59620716	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_59620700_59622200
ES_00063396	chrX	-	719	1	FSM	ENSMUSG00000083912.2	ENSMUST00000121155.2	613	1	1	-107	1	107	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGTTTTTTGTTTTG	NA	False	NA	NA	False	TATAAA	-15	NA	67363855	67363136	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_67363100_67363900
ES_00063399	chrX	-	1805	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	16	0	16	0	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACATGCTCCAAATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	71430448	71425475	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
ES_00063400	chrX	-	1026	4	FSM	ENSMUSG00000031347.13	ENSMUST00000033713.11	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_2	29.9146935282461	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	False	NA	-13	True	AATAAA	-17	NA	71960462	71957309	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293
ES_00063402	chrX	-	3468	4	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2593	25	intron_retention	FALSE	canonical	3	77	junction_3	4.18993502999218	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGTGAGTGAGTTGGGCA	NA	False	NA	25	True	NA	NA	NA	72083302	72077561	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72080775_72080892_72080952_72081548_72081672_72083229
ES_00063403	chrX	-	1585	10	Fusion	ENSMUSG00000079845.9_ENSMUSG00000058147.2_ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	603.599204770848	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72308996	72117950	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_-_72118054_72130003_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72308956
ES_00063404	chrX	-	1587	9	Fusion	ENSMUSG00000058147.2_ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	0	multi-exon	FALSE	canonical	3	806	junction_1	287.424745585692	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72308996	72129898	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72306028_72306099_72306921_72307059_72308956
ES_00063406	chrX	-	1180	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	110.415125775412	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACTTGTTGGCATGAGT	NA	False	NA	-10	True	AATAAA	-13	NA	72286674	72277686	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286557
ES_00063409	chrX	-	380	3	FSM	ENSMUSG00000031391.19	ENSMUST00000130110.2	856	3	476	0	476	0	multi-exon	FALSE	canonical	1	1	junction_2	1	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGCCACCACTCAGCCA	NA	False	NA	NA	False	NA	NA	NA	72901763	72901087	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72901150_72901243_72901446_72901647
ES_00063417	chrX	-	2126	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	0	-1	0	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974423	72965727	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
ES_00063419	chrX	-	2549	15	FSM	ENSMUSG00000031392.19	ENSMUST00000068286.12	2537	15	0	-12	0	0	multi-exon	FALSE	canonical	2	5	junction_1	113.226610415231	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTTTTAATTTTCTTT	NA	False	NA	0	True	NA	NA	NA	73067521	73057519	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73057732_73059011_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ES_00063420	chrX	-	3469	14	NNC	ENSMUSG00000031392.19	novel	3835	14	NA	NA	0	1	intron_retention	FALSE	canonical	3	30	junction_3	99.6513448606911	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATGCCTTTTAATTTTC	NA	False	NA	-3	True	NA	NA	NA	73067432	73057522	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_73059108_73060153_73060304_73060735_73060847_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ES_00063424	chrX	-	953	1	FSM	ENSMUSG00000081118.2	ENSMUST00000119643.2	1055	1	116	-14	116	14	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACAGTTCTTAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	73179677	73178724	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73178700_73179700
ES_00063428	chrX	-	747	4	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	0	15609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	690.600222029118	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCCAGATAAGTAAGCTA	4536	False	NA	NA	False	NA	NA	NA	73397181	73379272	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_73379305_73395769_73396105_73396479_73396609_73396930
ES_00063429	chrX	-	2228	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	0	-8	0	7	multi-exon	FALSE	canonical	3	33	junction_2	782.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGTGTAATATTTGGGT	NA	False	NA	1	True	AATAAA	-27	NA	73412164	73409316	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73411193_73411306_73411516_73412021
ES_00063430	chrX	-	1904	2	FSM	ENSMUSG00000032806.14	ENSMUST00000073067.11	1910	2	0	6	0	-6	multi-exon	FALSE	canonical	3	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGCAAGCTCGGGTCC	NA	False	NA	NA	False	AATAAA	-15	NA	73416911	73412828	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73414618_73416796
ES_00063432	chrX	-	688	1	FSM	ENSMUSG00000083283.4	ENSMUST00000119320.2	444	1	-154	-90	-154	90	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAAGACCTCATCTTTTT	NA	False	NA	NA	False	TTTAAA	-40	NA	73538582	73537894	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73537900_73538600
ES_00063434	chrX	-	325	1	FSM	ENSMUSG00000082170.2	ENSMUST00000118796.2	2222	1	1914	-17	1914	17	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTGTCACCCCTGAGGC	NA	False	NA	NA	False	NA	NA	NA	73833850	73833525	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73833500_73833800
ES_00063435	chrX	-	1709	3	FSM	ENSMUSG00000032750.14	ENSMUST00000127024.2	750	3	-23	-936	-23	-3	multi-exon	FALSE	canonical	3	11	junction_2	2	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAAGGCTTTTCTTAGTT	2156	False	NA	NA	False	ATTAAA	-17	NA	74012754	74010451	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74011592_74011767_74011897_74012314
ES_00063438	chrX	-	3071	2	FSM	ENSMUSG00000031200.17	ENSMUST00000147830.2	3071	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTCAAGATAACTCA	NA	False	NA	NA	False	CATAAA	-18	NA	74460174	74456779	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74459820_74460143
ES_00063440	chrX	-	456	1	FSM	ENSMUSG00000082755.2	ENSMUST00000118102.2	438	1	-6	-12	-6	12	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACTCATTCTTTGGGAAA	4078	False	NA	NA	False	NA	NA	NA	75031227	75030771	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_75030800_75031200
ES_00063441	chrX	-	255	1	FSM	ENSMUSG00000083482.2	ENSMUST00000117744.2	255	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTATACATGTTCCTGA	NA	False	NA	NA	False	AAGAAA	-11	NA	75963716	75963461	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_75963500_75963700
ES_00063442	chrX	-	769	1	FSM	ENSMUSG00000081164.2	ENSMUST00000121466.2	769	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGCTGCTCTGAATTAA	NA	False	NA	NA	False	NA	NA	NA	76801752	76800983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_76801000_76801800
ES_00063443	chrX	-	4490	8	NIC	ENSMUSG00000035725.14	novel	4146	9	NA	NA	0	440	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	17.4086537242199	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCAGGTCGTTTCTTG	NA	False	NA	NA	False	AATAAA	-22	NA	76839884	76804576	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76816721_76816842_76825643_76825908_76829733_76829903_76839153
ES_00063445	chrX	-	365	4	FSM	ENSMUSG00000047996.17	ENSMUST00000134602.8	368	4	3	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	8.25967446224258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATCTGTACATATGAAG	NA	False	NA	NA	False	AAGAAA	-35	NA	77627497	77527411	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_77527518_77564376_77564428_77605165_77605251_77627374
ES_00063446	chrX	-	2405	1	FSM	ENSMUSG00000083367.2	ENSMUST00000120076.2	1407	1	-126	-872	-126	872	mono-exon	FALSE	NA	NA	NA	NA	NA	936	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAGAAAGATAAAAAATCAA	NA	False	NA	NA	False	ATTAAA	-27	NA	79578883	79576478	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_79576500_79578900
ES_00063447	chrX	-	2358	1	FSM	ENSMUSG00000082319.4	ENSMUST00000118948.2	2347	1	0	-11	0	11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAGAAAGAAAGAAAGAAA	9723	False	NA	NA	False	AATAAA	-31	NA	80866336	80863978	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_80864000_80866300
ES_00063448	chrX	-	3687	21	NIC	ENSMUSG00000025059.17	novel	4279	21	NA	NA	0	-658	combination_of_known_junctions	FALSE	canonical	3	6	junction_17	45.7159436083299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTTCTCATTTCCAG	NA	False	NA	-5	True	AATAAA	-19	NA	84820259	84746200	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84793217_84793302_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ES_00063449	chrX	-	952	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-35	-50391	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTGGGAATTTATGAT	NA	False	NA	NA	False	NA	NA	NA	85348734	85344252	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_85344996_85347819_85347902_85348607
ES_00063450	chrX	-	977	1	FSM	ENSMUSG00000082450.2	ENSMUST00000118274.2	1041	1	18	46	18	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAAGCCAAGTCCAGCC	NA	False	NA	NA	False	ACTAAA	-18	NA	85442832	85441855	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_85441900_85442800
ES_00063451	chrX	-	204	1	Intergenic	novelGene_4418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTATTATTTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	88926930	88926726	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_88926700_88926900
ES_00063452	chrX	-	793	1	FSM	ENSMUSG00000062162.3	ENSMUST00000099471.3	993	1	658	-458	658	458	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTCATTAGAAAGTAA	NA	False	NA	NA	False	AATAAA	-21	NA	91059131	91058338	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_91058300_91059100
ES_00063453	chrX	-	661	1	FSM	ENSMUSG00000067649.4	ENSMUST00000088137.3	1571	1	1138	-228	1138	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTATTTCACTTCAT	NA	False	NA	NA	False	CATAAA	-37	NA	91163239	91162578	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_91162600_91163200
ES_00063454	chrX	-	6932	8	NNC	ENSMUSG00000079509.11	novel	6762	8	NA	NA	403	-6	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_7	38.1308167192032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTACCCTAGTGGAGTG	NA	False	NA	-8	True	AATAAA	-15	NA	93166103	93118243	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93165758
ES_00063459	chrX	-	206	2	Antisense	novelGene_ENSMUSG00000043929.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	677	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATCTTTGCTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	93305774	93305413	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_93305569_93305723
ES_00063460	chrX	-	1280	5	FSM	ENSMUSG00000025151.17	ENSMUST00000139375.8	1274	5	0	-6	0	4	multi-exon	TRUE	canonical	3	1436	junction_4	125.064733238431	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTTCTCATCTTTTGT	NA	False	NA	2	True	AATAAA	-25	NA	93581441	93579075	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93579284_93579465_93579852_93580479_93580963_93581147_93581191_93581281
ES_00063461	chrX	-	2109	1	FSM	ENSMUSG00000082776.4	ENSMUST00000118127.2	1416	1	-33	-660	-33	660	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGCTGGTTTTGTGTG	NA	False	NA	NA	False	AATAAA	-23	NA	93817673	93815564	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_93815600_93817700
ES_00063462	chrX	-	4618	5	FSM	ENSMUSG00000057421.13	ENSMUST00000139717.2	4625	5	7	0	7	0	multi-exon	FALSE	canonical	3	911	junction_1	34.0807863759039	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAGATAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	95000561	94993040	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94994963_94995513_94995796_94996827_94998818_94999480_94999607_95000263
ES_00063464	chrX	-	2905	11	NIC	ENSMUSG00000045802.14	novel	1479	12	NA	NA	-135	7	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	7.69675256195754	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGCATCATGTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	95411660	95349776	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_95351419_95356633_95356734_95358396_95358613_95363891_95364023_95364209_95364292_95365602_95365665_95365900_95365977_95373119_95373245_95382022_95382151_95400740_95400850_95411426
ES_00063465	chrX	-	6262	8	FSM	ENSMUSG00000034457.11	ENSMUST00000037353.10	4752	8	0	-1510	0	1510	multi-exon	FALSE	canonical	3	19	junction_1	34.3130843134516	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGATCACTGATCTCT	NA	False	NA	NA	False	NA	NA	NA	96420822	96375935	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ES_00063467	chrX	-	2275	13	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	21061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.878376563484	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTCAGGAAGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	100128978	100101754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100101787_100122816_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00063468	chrX	-	2257	13	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	21061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.878376563484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTCAGGAAGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	100128978	100101754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100101781_100122828_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00063469	chrX	-	2274	13	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	21061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.878376563484	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTCAGGAAGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	100128978	100101754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100101787_100122817_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00063470	chrX	-	2484	15	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	0	21061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	626.242389664134	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTCAGGAAGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	100129626	100101754	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100101787_100122816_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127701_100127881_100128877_100129064_100129193_100129261_100129344
ES_00063471	chrX	-	2751	13	FSM	ENSMUSG00000031297.15	ENSMUST00000113710.8	2750	13	0	-1	0	0	multi-exon	FALSE	canonical	3	29	junction_12	396.021464064765	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-12	NA	100129626	100122826	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193
ES_00063472	chrX	-	5415	26	NNC	ENSMUSG00000031310.17	novel	6057	25	NA	NA	0	11814	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.6600947566491	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAAACCAAGCTA	NA	False	NA	NA	False	NA	NA	NA	100463970	100436175	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100436201_100447989_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463933
ES_00063474	chrX	-	4871	25	NIC	ENSMUSG00000031310.17	novel	6057	25	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_23	28.6471590602318	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTTTCTCTGGGGGA	NA	False	NA	-2	True	AATAAA	-14	NA	100463804	100447989	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100462400_100462559_100463764
ES_00063477	chrX	-	1597	6	FSM	ENSMUSG00000031310.17	ENSMUST00000117637.8	1593	6	0	-4	0	0	multi-exon	FALSE	canonical	3	17	junction_2	47.004680617998	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCAGCCTCTCCTTCCCC	NA	False	NA	0	True	NA	NA	NA	100463447	100458534	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ES_00063479	chrX	-	203	1	Intergenic	novelGene_4427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAAAGCTGGGCGGTAG	NA	False	NA	NA	False	NA	NA	NA	100714404	100714201	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_100714200_100714400
ES_00063480	chrX	-	751	1	FSM	ENSMUSG00000082729.4	ENSMUST00000121259.2	306	1	-70	-375	-70	375	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTTTTACTGAAGGACT	NA	False	NA	NA	False	AAGAAA	-25	NA	100735526	100734775	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100734800_100735500
ES_00063481	chrX	-	1193	7	FSM	ENSMUSG00000045010.15	ENSMUST00000124577.8	1190	7	0	-3	0	3	multi-exon	FALSE	canonical	3	11	junction_2	111.484926734016	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGGCTCTGAGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	100836869	100833655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100834130_100834212_100834255_100834440_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ES_00063482	chrX	-	558	3	FSM	ENSMUSG00000031320.10	ENSMUST00000155028.2	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	16896	junction_1	54.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAGAGACAAGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	101230343	101228679	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101228738_101229108_101229267_101230001
ES_00063483	chrX	-	607	3	FSM	ENSMUSG00000051159.17	ENSMUST00000134887.8	607	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	97.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAGGCCTACCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	101294552	101291319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101291615_101292168_101292294_101294365
ES_00063484	chrX	-	1274	7	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.3698772582379	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGACACTGCCCAGGTCT	NA	False	NA	NA	False	AATAAA	-9	NA	101898202	101891247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896311_101896486_101898002
ES_00063485	chrX	-	1425	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	74	-3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	56.3197866415254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGACACTGCCCAGGTCT	NA	False	NA	NA	False	AATAAA	-9	NA	101898148	101891247	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896539_101898002
ES_00063491	chrX	-	7507	6	NNC	ENSMUSG00000056537.12	novel	7439	5	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	86.0729922798087	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGCTTTTTCATCCT	2396	False	NA	-2	True	AATAAA	-15	NA	103024867	103000769	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_103007650_103008856_103008941_103010096_103010287_103022109_103022202_103022878_103022941_103024668
ES_00063492	chrX	-	2278	6	NNC	ENSMUSG00000056537.12	novel	7429	5	NA	NA	28	-5215	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	85.0858390097906	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCATTGCTTTCTTAG	2401	False	NA	NA	False	TATAAA	-14	NA	103024862	103005983	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_103007650_103008856_103008941_103010096_103010287_103022109_103022202_103022878_103022941_103024678
ES_00063493	chrX	-	5327	6	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	0	2766	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	9.86711710683521	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTGTTTTTATAAAAGT	NA	False	NA	NA	False	AATAAA	-19	NA	103244723	103124553	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_103124709_103126759_103126890_103127461_103131837_103132486_103132613_103143231_103143288_103244238
ES_00063494	chrX	-	5211	4	FSM	ENSMUSG00000046449.16	ENSMUST00000056502.7	5211	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	9.03081145609604	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	103244750	103127319	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103131837_103132486_103132613_103143231_103143288_103244238
ES_00063495	chrX	-	1580	13	NNC	ENSMUSG00000033906.6	novel	5509	12	NA	NA	30	-3953	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_3	36.636635428974	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTGTCTAGTCTGGT	NA	False	NA	-34	True	AATATA	-8	NA	103714640	103584527	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_103584775_103588433_103588511_103592686_103592741_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
ES_00063496	chrX	-	2164	8	NIC	ENSMUSG00000087174.8	novel	1887	8	NA	NA	0	328	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	41.0867673220904	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGTCTTTTGCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	104113700	104082085	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104083419_104086735_104086911_104087607_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ES_00063497	chrX	-	223	2	FSM	ENSMUSG00000087174.8	ENSMUST00000144774.2	247	2	0	24	0	-24	multi-exon	FALSE	canonical	1	2	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGCCAAAGAGATTGGT	NA	False	NA	NA	False	AATAAA	-3	NA	104119397	104118655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104118773_104119291
ES_00063498	chrX	-	10246	36	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_35	54.4711569436111	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104972183	104841220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104955075_104955261_104972093
ES_00063499	chrX	-	10251	35	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_34	43.1735453408802	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104972844	104841220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
ES_00063501	chrX	-	394	1	FSM	ENSMUSG00000079965.3	ENSMUST00000116081.3	549	1	109	46	109	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGGAAAAAGCAAAGGCTA	NA	False	NA	NA	False	NA	NA	NA	104888510	104888116	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_104888100_104888500
ES_00063503	chrX	-	6665	12	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_9	100.290322366271	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTGTTGAAGCATTTA	NA	False	NA	-3	True	AATAAA	-14	NA	104972948	104909153	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104911530_104918165_104921180_104921972_104922041_104923514_104923622_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972564
ES_00063512	chrX	-	3894	11	NNC	ENSMUSG00000031232.18	novel	4115	11	NA	NA	0	50904	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTATTTTCACATCCTG	NA	False	NA	NA	False	AAAAAG	-22	NA	105055505	104960785	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_104961263_105012796_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ES_00063513	chrX	-	1357	1	FSM	ENSMUSG00000083595.2	ENSMUST00000118513.2	1354	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTGTAGGTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	105686340	105684983	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_105685000_105686300
ES_00063515	chrX	-	4222	24	NIC	ENSMUSG00000025665.17	novel	4151	23	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_23	85.5027166572244	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110373150	110297888	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372796_110372967
ES_00063517	chrX	-	3909	17	FSM	ENSMUSG00000034607.7	ENSMUST00000039887.4	3886	17	-21	-2	-21	2	multi-exon	FALSE	canonical	1	1	junction_16	3.09989919190931	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTATTGTCTTTGTGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	111608369	111548125	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_111550139_111552674_111552790_111554029_111554113_111554943_111555073_111556408_111556529_111556815_111556969_111557756_111557871_111558714_111558808_111565785_111565861_111567148_111567177_111571447_111571579_111573845_111574020_111578730_111578833_111587067_111587149_111593090_111593166_111607866_111608205_111608284
ES_00063518	chrX	-	430	1	Intergenic	novelGene_4450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTTCTCCTTTAAATAC	NA	False	NA	NA	False	NA	NA	NA	113237511	113237081	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_113237100_113237500
ES_00063520	chrX	-	497	2	Genic_Genomic	ENSMUSG00000082260.4	novel	348	1	NA	NA	-69	49054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTCTAAATGACAATAGC	NA	False	NA	NA	False	NA	NA	NA	113891083	113841612	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_113841650_113890623
ES_00063521	chrX	-	1635	2	Antisense	novelGene_ENSMUSG00000079450.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	173	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCAGAACGTGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	122061297	122058798	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_122059675_122060538
ES_00063523	chrX	-	399	1	FSM	ENSMUSG00000094238.2	ENSMUST00000178427.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	123380054	123379655	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_123379700_123380100
ES_00063524	chrX	-	213	1	FSM	ENSMUSG00000096763.2	ENSMUST00000178365.2	399	1	216	-30	216	30	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAGAAAGAAAGAAAGAT	NA	False	NA	NA	False	AATAAA	-30	NA	124582638	124582425	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_124582400_124582600
ES_00063525	chrX	-	489	1	FSM	ENSMUSG00000096437.2	ENSMUST00000118529.2	399	1	-75	-15	-75	15	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124895062	124894573	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_124894600_124895100
ES_00063526	chrX	-	212	1	Intergenic	novelGene_4480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTATAACATTCATTAAAA	NA	False	NA	NA	False	NA	NA	NA	128613665	128613453	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_128613500_128613700
ES_00063527	chrX	-	10273	6	FSM	ENSMUSG00000051323.17	ENSMUST00000149154.8	10289	6	0	16	0	-1	multi-exon	FALSE	canonical	3	7	junction_2	6.79411510058521	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTTTGGTGAAATGTG	NA	False	NA	NA	False	ATTAAA	-21	NA	132589736	132483624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_132489327_132526017_132526191_132533643_132533703_132581829_132582158_132582840_132582982_132585866
ES_00063528	chrX	-	3238	12	FSM	ENSMUSG00000067369.13	ENSMUST00000145066.2	3237	12	0	-1	0	0	multi-exon	FALSE	canonical	3	26	junction_2	9.16785617125724	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATCTCTAGTCCATG	NA	False	NA	-5	True	AATAAA	-23	NA	133177676	133123843	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
ES_00063529	chrX	-	3009	13	NNC	ENSMUSG00000067369.13	novel	3119	13	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	14.868637761708	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTATTCACTATCTCTAG	NA	False	NA	-11	True	AATAAA	-17	NA	133177672	133123849	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168266_133177594
ES_00063530	chrX	-	1762	5	NNC	ENSMUSG00000067369.13	novel	3128	14	NA	NA	0	12	intron_retention	FALSE	canonical	2	4	junction_3	24.0351305384431	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCATTGTCATTGTAATC	NA	False	NA	5	True	AGTAAA	-26	NA	133177676	133163224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_133164611_133167009_133167065_133168079_133168243_133171258_133171335_133177594
ES_00063531	chrX	-	1490	3	NNC	ENSMUSG00000048007.5	novel	1421	2	NA	NA	-42	20691	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	587.5	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAGAAAAATAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	133442656	133417313	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_133417345_133438008_133439017_133442205
ES_00063532	chrX	-	3386	6	FSM	ENSMUSG00000033436.14	ENSMUST00000035559.11	3384	6	0	-2	0	0	multi-exon	FALSE	canonical	2	3	junction_5	12.1556571192182	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGTTCTGGTGCTTTA	NA	False	NA	-1	True	AATAAA	-21	NA	133709745	133704893	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709192_133709667
ES_00063534	chrX	-	928	3	FSM	ENSMUSG00000060726.11	ENSMUST00000073674.3	299	3	-634	5	-634	-5	multi-exon	FALSE	canonical	3	17	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTTGGGCTTGTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	134622056	134619420	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_134619503_134620414_134620520_134621315
ES_00063535	chrX	-	2333	3	FSM	ENSMUSG00000051579.11	ENSMUST00000136533.2	417	3	-87	-1829	-37	-176	multi-exon	FALSE	canonical	2	30	junction_1	336.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATGTACCCCAGACTTGA	NA	False	NA	NA	False	NA	NA	NA	135073037	135069908	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135071799_135072168_135072455_135072880
ES_00063536	chrX	-	1028	3	FSM	ENSMUSG00000054034.11	ENSMUST00000066819.11	1044	3	14	2	14	-2	multi-exon	FALSE	canonical	2	6	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATCCAGTATCAGTCCAT	NA	False	NA	NA	False	NA	NA	NA	135104611	135101698	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135102563_135103133_135103202_135104515
ES_00063539	chrX	-	2050	7	NIC	ENSMUSG00000044348.15	novel	3440	7	NA	NA	15	310	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	13.5359603361646	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCCCACAATCCTTCCC	NA	False	NA	NA	False	NA	NA	NA	135938742	135903220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938636
ES_00063540	chrX	-	1722	7	FSM	ENSMUSG00000044348.15	ENSMUST00000125747.8	1737	7	15	0	7	0	multi-exon	FALSE	canonical	0	0	junction_6	13.5359603361646	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135938766	135903530	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938678
ES_00063543	chrX	-	918	1	FSM	ENSMUSG00000098559.3	ENSMUST00000183537.2	801	1	-22	-95	-22	95	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTTCTGCATATAATAT	NA	False	NA	NA	False	ATTAAA	-36	NA	138615252	138614334	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138614300_138615300
ES_00063544	chrX	-	3046	12	FSM	ENSMUSG00000031434.16	ENSMUST00000136415.9	3046	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	17.7102482354704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTTCCATGGTGTTTT	NA	False	NA	0	True	AGTAAA	-22	NA	138755740	138722452	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138723578_138723916_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607
ES_00063545	chrX	-	4412	16	FSM	ENSMUSG00000031434.16	ENSMUST00000033811.14	4412	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	16.9972546802908	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGGTAGCAGGGGAAAT	NA	False	NA	72	True	AATAAA	-24	NA	138772403	138722380	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
ES_00063546	chrX	-	4010	17	NNC	ENSMUSG00000031434.16	novel	3862	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	13.4437485471873	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTTCCATGGTGTTTT	NA	False	NA	0	True	AGTAAA	-22	NA	138772374	138722452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758644_138759546_138759766_138765243_138765377_138771818_138771892_138772020
ES_00063547	chrX	-	1880	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	36	junction_8	170.821864452417	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTGGCTGAACTGGGTT	NA	False	NA	-10	True	AATAAA	-15	NA	138963037	138907554	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
ES_00063548	chrX	-	1863	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTGAACTGGGTTTTTG	NA	False	NA	-6	True	AATAAA	-19	NA	138963327	138907550	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
ES_00063550	chrX	-	419	1	FSM	ENSMUSG00000083200.2	ENSMUST00000120163.2	2608	1	1441	748	1441	-748	mono-exon	FALSE	NA	NA	NA	NA	NA	835	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTCCCCCAACAAGCACA	NA	False	NA	NA	False	NA	NA	NA	143069888	143069469	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_143069500_143069900
ES_00063551	chrX	-	6777	11	FSM	ENSMUSG00000041688.17	ENSMUST00000112836.9	6957	11	138	42	138	-42	multi-exon	FALSE	canonical	1	1	junction_5	1.4142135623731	1590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGCCTATCTTTCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	144270497	144229462	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_144233095_144233426_144234300_144235390_144235624_144236347_144236471_144242994_144243186_144244731_144244882_144254413_144254560_144258715_144258809_144259190_144259336_144263000_144263455_144269760
ES_00063552	chrX	-	578	1	FSM	ENSMUSG00000081718.2	ENSMUST00000119275.2	1208	1	587	43	587	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGTTACATGGACCCCA	NA	False	NA	NA	False	NA	NA	NA	145383367	145382789	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_145382800_145383400
ES_00063558	chrX	-	581	2	Genic_Genomic	ENSMUSG00000083596.5	novel	483	1	NA	NA	-41	30009	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAACCCTAGTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	149998686	149968153	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_149968181_149998132
ES_00063559	chrX	-	580	2	Genic_Genomic	ENSMUSG00000083596.5	novel	483	1	NA	NA	-41	30009	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAACCCTAGTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	149998686	149968153	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_149968180_149998132
ES_00063560	chrX	-	717	1	FSM	ENSMUSG00000084166.2	ENSMUST00000121488.2	717	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGACGTCACTCATACAC	NA	False	NA	NA	False	CATAAA	-20	NA	150197380	150196663	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_150196700_150197400
ES_00063561	chrX	-	1541	8	NNC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	-592	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	35.5969501101268	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTGTGTCGTAAGAG	NA	False	NA	-4	True	AATAAA	-15	NA	150799883	150787579	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799715
ES_00063563	chrX	-	1091	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	0	-93	0	93	multi-exon	FALSE	canonical	2	6	junction_1	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGCCTTTTCTTTAGGG	NA	False	NA	NA	False	NA	NA	NA	151151700	151149918	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_151150266_151150416_151150507_151151046
ES_00063565	chrX	-	1302	3	FSM	ENSMUSG00000055746.10	ENSMUST00000112559.8	1302	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAATGTTAATAATCGT	NA	False	NA	NA	False	NA	NA	NA	153815496	153810479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_153811648_153812583_153812673_153815451
ES_00063568	chrX	-	1025	2	FSM	ENSMUSG00000025289.16	ENSMUST00000123915.2	1025	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAATTAAGGCTATTTTT	NA	False	NA	NA	False	CATAAA	-14	NA	154121470	154119787	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_154120451_154121108
ES_00063569	chrX	-	216	2	Intergenic	novelGene_4507	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTTTAAGAAACTATAA	NA	False	NA	NA	False	NA	NA	NA	155309332	155253438	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_155253604_155309281
ES_00063570	chrX	-	3045	6	FSM	ENSMUSG00000071708.12	ENSMUST00000127089.2	3053	6	0	8	0	-8	multi-exon	FALSE	canonical	3	428	junction_1	22.6680391741324	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATTCAATGAGGATGGC	NA	False	NA	NA	False	AATAAA	-10	NA	156275040	156241877	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ES_00063571	chrX	-	3458	6	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	0	-167	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	99.5630453531831	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	156381647	156349109	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ES_00063572	chrX	-	3203	1	FSM	ENSMUSG00000091736.4	ENSMUST00000065806.5	2867	1	-335	-1	-335	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGCTTGCTTGTGTGA	NA	False	NA	NA	False	AATAAA	-17	NA	156352316	156349113	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156349100_156352300
ES_00063574	chrX	-	5853	22	FSM	ENSMUSG00000025658.17	ENSMUST00000026750.15	5738	22	-98	-17	-98	17	multi-exon	FALSE	canonical	2	5	junction_13	3.75315438004534	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGACTTTATTCATGCAA	NA	False	NA	NA	False	AATAAA	-28	NA	156826388	156604414	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_156606833_156609352_156609550_156636090_156636632_156639555_156639657_156643564_156643633_156648825_156648898_156649586_156649661_156654640_156654814_156655100_156655150_156671393_156671609_156673078_156673169_156689665_156689878_156693112_156693247_156702741_156702889_156717635_156717705_156722991_156723052_156728292_156728413_156744249_156744292_156773103_156773192_156776726_156776930_156779516_156779681_156825772
ES_00063575	chrX	-	2772	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	0	40298	intron_retention	FALSE	non_canonical	0	0	junction_1	415.306080494697	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATATTTTTTCCTTACCA	NA	False	NA	NA	False	NA	NA	NA	158921305	158864906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_158864943_158905212_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ES_00063576	chrX	-	3714	1	ISM	ENSMUSG00000031292.15	ENSMUST00000198931.2	9796	17	123383	0	12077	0	mono-exon	FALSE	NA	NA	NA	NA	NA	374	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGTGAAAACTTTGG	NA	False	NA	NA	False	TATAAA	-16	NA	159588101	159584387	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_159584400_159588100
ES_00063577	chrX	-	5370	8	FSM	ENSMUSG00000038344.15	ENSMUST00000131463.2	5399	8	29	0	29	0	multi-exon	FALSE	canonical	3	102	junction_3	52.2603373232785	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161595448	161561914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287
ES_00063578	chrX	-	3813	11	FSM	ENSMUSG00000038344.15	ENSMUST00000112316.9	3715	11	-98	0	-98	0	multi-exon	FALSE	canonical	3	54	junction_9	58.6501491899211	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612548	161561914	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ES_00063580	chrX	-	2526	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	-1	0	0	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTATGTCTCATCTCCAA	NA	False	NA	-6	True	AATAAA	-17	NA	161612450	161571912	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ES_00063582	chrX	-	2433	8	FSM	ENSMUSG00000031373.5	ENSMUST00000033739.5	3436	8	0	1003	0	-1003	multi-exon	TRUE	canonical	0	0	junction_2	1.92724822331886	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATCTGTTAGTAATTGTG	NA	False	NA	NA	False	NA	NA	NA	162810993	162760820	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_162762367_162770093_162770250_162771345_162771409_162773420_162773517_162774346_162774466_162783234_162783433_162797798_162797991_162810930
ES_00063583	chrX	-	2047	2	Intergenic	novelGene_4518	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	172	junction_1	0	492	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAGAGGAAGGACAGC	NA	False	NA	NA	False	NA	NA	NA	162835463	162831344	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_162832251_162834322
ES_00063585	chrX	-	1688	2	Intergenic	novelGene_4520	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	125	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCCGTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	162835169	162831423	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_162832265_162834322
ES_00063586	chrX	-	3344	1	Intergenic	novelGene_4521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTACTCTTGACAGCCCT	NA	False	NA	NA	False	NA	NA	NA	162835463	162832119	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_162832100_162835500
ES_00063587	chrX	-	5422	3	ISM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	1073	0	1073	0	intron_retention	FALSE	canonical	3	63	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTATTCTCCAATATTT	NA	False	NA	-2	True	AATAAA	-20	NA	165292401	165282807	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_165286402_165288701_165288833_165290704
ES_00063588	chrX	-	2486	7	NIC	ENSMUSG00000031352.11	novel	2473	7	NA	NA	-134	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	191.804950115707	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103502	168094525	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103170
ES_00063591	chrX	+	829	1	Intergenic	novelGene_4281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	907	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTTTTTAACTGCCC	NA	False	NA	NA	False	NA	NA	NA	5170972	5171801	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_5171000_5171800
ES_00063592	chrX	+	1551	1	Intergenic	novelGene_4284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAAATCATTTACTACCA	NA	False	NA	NA	False	ACTAAA	-43	NA	5609638	5611189	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_5609600_5611200
ES_00063593	chrX	+	203	1	Intergenic	novelGene_4295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGGTAGGGTCTTCCTA	NA	False	NA	6	True	NA	NA	NA	8121507	8121710	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_8121500_8121700
ES_00063594	chrX	+	989	1	Intergenic	novelGene_4297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGACACTGGTATCTGGTA	NA	False	NA	NA	False	CATAAA	-38	NA	9192642	9193631	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_9192600_9193600
ES_00063595	chrX	+	235	1	Intergenic	novelGene_4301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATAACAAAAAATGACCT	NA	False	NA	NA	False	AGTAAA	-2	NA	10568846	10569081	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_10568800_10569100
ES_00063596	chrX	+	221	1	Intergenic	novelGene_4304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCATGTTTTAAAAAAAACAA	7117	False	NA	NA	False	NA	NA	NA	12594987	12595208	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_12595000_12595200
ES_00063598	chrX	+	1437	1	Intergenic	novelGene_4310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGCAAAACTCTTTGAA	NA	False	NA	NA	False	NA	NA	NA	16207550	16208987	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_16207600_16209000
ES_00063600	chrX	+	216	1	Intergenic	novelGene_4316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	547	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTGTGCCGACAGATT	NA	False	NA	NA	False	NA	NA	NA	20285294	20285510	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_20285300_20285500
ES_00063601	chrX	+	2571	1	Intergenic	novelGene_4323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	2115	False	NA	NA	False	NA	NA	NA	21489437	21492008	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_21489400_21492000
ES_00063602	chrX	+	223	1	Intergenic	novelGene_4326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCTCCCGACAGGAGGC	NA	False	NA	NA	False	NA	NA	NA	22256272	22256495	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_22256300_22256500
ES_00063603	chrX	+	1064	1	Intergenic	novelGene_4331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACCAATCAAATTCATTA	NA	False	NA	NA	False	NA	NA	NA	26369550	26370614	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_26369600_26370600
ES_00063605	chrX	+	238	1	Intergenic	novelGene_4346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAAGCACCATGCACAGG	NA	False	NA	NA	False	AAGAAA	-43	NA	36041090	36041328	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_36041100_36041300
ES_00063608	chrX	+	211	1	Intergenic	novelGene_4351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATCAGAGTTGCAGC	NA	False	NA	NA	False	NA	NA	NA	37592699	37592910	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_37592700_37592900
ES_00063610	chrX	+	326	1	Intergenic	novelGene_4354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTGATAAATTTTTGA	NA	False	NA	NA	False	TTTAAA	-41	NA	40773253	40773579	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_40773300_40773600
ES_00063612	chrX	+	210	1	Intergenic	novelGene_4377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGAGCCAGGT	NA	False	NA	NA	False	NA	NA	NA	57017774	57017984	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_57017800_57018000
ES_00063613	chrX	+	203	1	Intergenic	novelGene_4378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATTTTTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	57022095	57022298	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_57022100_57022300
ES_00063614	chrX	+	210	1	Intergenic	novelGene_4379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGAACACAGAATAGCAAA	NA	False	NA	NA	False	AAAAAG	-34	NA	57675281	57675491	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_57675300_57675500
ES_00063615	chrX	+	1584	1	Intergenic	novelGene_4385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATATTATCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	63540936	63542520	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_63540900_63542500
ES_00063616	chrX	+	5253	1	Intergenic	novelGene_4386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	347	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGATATATTTTGACCAC	NA	False	NA	NA	False	NA	NA	NA	63977034	63982287	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_63977000_63982300
ES_00063617	chrX	+	204	1	Intergenic	novelGene_4388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTAGCTTTGAGCACC	NA	False	NA	NA	False	NA	NA	NA	70589642	70589846	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_70589600_70589800
ES_00063618	chrX	+	494	1	Intergenic	novelGene_4389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGAAGTTTTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	71284158	71284652	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_71284200_71284700
ES_00063619	chrX	+	240	1	Intergenic	novelGene_4398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGCTTTTGGGACGACT	NA	False	NA	NA	False	NA	NA	NA	73178399	73178639	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73178400_73178600
ES_00063620	chrX	+	275	1	Intergenic	novelGene_4403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATCAAAAGATGGCCTA	8723	False	NA	NA	False	AATAAA	-19	NA	73537417	73537692	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73537400_73537700
ES_00063621	chrX	+	215	1	Intergenic	novelGene_4406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCACTCTTAACTACTAA	NA	False	NA	NA	False	NA	NA	NA	74108870	74109085	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_74108900_74109100
ES_00063622	chrX	+	215	1	Intergenic	novelGene_4407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAACTTTAATACTTTA	NA	False	NA	NA	False	NA	NA	NA	74109699	74109914	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_74109700_74109900
ES_00063623	chrX	+	785	1	Intergenic	novelGene_4409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAGACTTCTAGAGTTAG	7121	False	NA	NA	False	AATAAA	-24	NA	74278573	74279358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_74278600_74279400
ES_00063624	chrX	+	413	1	Intergenic	novelGene_4411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGCGGAAGAAAAAACGGA	NA	False	NA	NA	False	NA	NA	NA	81252063	81252476	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_81252100_81252500
ES_00063625	chrX	+	397	1	Intergenic	novelGene_4414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGATGCTCTGTTGAGGT	NA	False	NA	NA	False	NA	NA	NA	86173333	86173730	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_86173300_86173700
ES_00063626	chrX	+	226	1	Intergenic	novelGene_4415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTCCCTGGGTCTTAAAA	2544	False	NA	NA	False	NA	NA	NA	86194318	86194544	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_86194300_86194500
ES_00063627	chrX	+	1748	1	Intergenic	novelGene_4416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCCCAGGCTAGCACT	NA	False	NA	NA	False	NA	NA	NA	88052948	88054696	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_88052900_88054700
ES_00063629	chrX	+	220	1	Intergenic	novelGene_4422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAAGTATTTCTACTCG	NA	False	NA	NA	False	NA	NA	NA	93207082	93207302	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_93207100_93207300
ES_00063630	chrX	+	206	1	Intergenic	novelGene_4424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATATAATGTTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	100134914	100135120	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_100134900_100135100
ES_00063631	chrX	+	203	1	Intergenic	novelGene_4426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTTTTATCTATATAT	NA	False	NA	NA	False	NA	NA	NA	100676803	100677006	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_100676800_100677000
ES_00063632	chrX	+	488	1	Intergenic	novelGene_4434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCGCTCTCCTGGCA	NA	False	NA	NA	False	NA	NA	NA	101767515	101768003	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_101767500_101768000
ES_00063633	chrX	+	217	1	Intergenic	novelGene_4439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	102315352	102315569	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_102315400_102315600
ES_00063634	chrX	+	297	1	Intergenic	novelGene_4442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTATCGTTGAAATTCGAA	NA	False	NA	NA	False	NA	NA	NA	102493473	102493770	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_102493500_102493800
ES_00063636	chrX	+	215	1	Intergenic	novelGene_4447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCTCGTTTTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	105959907	105960122	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_105959900_105960100
ES_00063637	chrX	+	281	1	Intergenic	novelGene_4448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAAGGACAAAAGACAGG	NA	False	NA	NA	False	NA	NA	NA	107343490	107343771	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_107343500_107343800
ES_00063638	chrX	+	287	1	Intergenic	novelGene_4453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATTATAAATCGGGTTT	NA	False	NA	NA	False	NA	NA	NA	113240184	113240471	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113240200_113240500
ES_00063639	chrX	+	229	1	Intergenic	novelGene_4455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTGGCTCTCCTTACCT	NA	False	NA	NA	False	NA	NA	NA	113241087	113241316	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113241100_113241300
ES_00063640	chrX	+	207	1	Intergenic	novelGene_4456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGGAAACTCTTAAGTAG	NA	False	NA	NA	False	NA	NA	NA	113886578	113886785	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113886600_113886800
ES_00063641	chrX	+	201	1	Intergenic	novelGene_4459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCACCAGAGAACTCCTAA	NA	False	NA	NA	False	NA	NA	NA	115437510	115437711	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_115437500_115437700
ES_00063642	chrX	+	5182	1	Intergenic	novelGene_4460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	429	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTTTTTATTAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	116226544	116231726	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_116226500_116231700
ES_00063643	chrX	+	1843	1	Intergenic	novelGene_4468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCTTTCTTTTGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	122307205	122309048	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122307200_122309000
ES_00063644	chrX	+	1225	1	Intergenic	novelGene_4470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAATTACCTAGCAAGTTA	NA	False	NA	NA	False	NA	NA	NA	122309312	122310537	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122309300_122310500
ES_00063645	chrX	+	1059	1	Intergenic	novelGene_4475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTTATTTAACTTAATTA	NA	False	NA	NA	False	NA	NA	NA	122753626	122754685	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122753600_122754700
ES_00063646	chrX	+	271	1	Intergenic	novelGene_4478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGGTCATGTGAATA	NA	False	NA	NA	False	AATAAA	-24	NA	126092212	126092483	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_126092200_126092500
ES_00063647	chrX	+	203	1	Intergenic	novelGene_4482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGACACATCTTCTTATC	NA	False	NA	NA	False	NA	NA	NA	129455710	129455913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_129455700_129455900
ES_00063648	chrX	+	212	1	Intergenic	novelGene_4483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTCTCACTAGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	133206912	133207124	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_133206900_133207100
ES_00063651	chrX	+	662	1	Intergenic	novelGene_4489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGTCTGGAGACACAGC	NA	False	NA	NA	False	NA	NA	NA	141413695	141414357	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_141413700_141414400
ES_00063652	chrX	+	219	1	Intergenic	novelGene_4494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGGCTGATGACTGCCA	NA	False	NA	NA	False	NA	NA	NA	145493630	145493849	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_145493600_145493800
ES_00063653	chrX	+	968	1	Intergenic	novelGene_4495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGATGAACTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	149276905	149277873	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_149276900_149277900
ES_00063655	chrX	+	592	1	Intergenic	novelGene_4496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTGAAGCTTATGAACT	NA	False	NA	NA	False	NA	NA	NA	149853698	149854290	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_149853700_149854300
ES_00063659	chrX	+	2348	1	Intergenic	novelGene_4500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGGTATTATAAAATTTTA	NA	False	NA	NA	False	NA	NA	NA	151645087	151647435	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151645100_151647400
ES_00063660	chrX	+	201	1	Intergenic	novelGene_4503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCACAGTTAGGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	151703652	151703853	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151703700_151703900
ES_00063662	chrX	+	316	1	Intergenic	novelGene_4511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTCTTTTTCTTGAGT	NA	False	NA	NA	False	AATGAA	-29	NA	158391003	158391319	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_158391000_158391300
ES_00063663	chrX	+	216	1	Intergenic	novelGene_4512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTACATCATTCACCATT	NA	False	NA	NA	False	AAAAAG	-18	NA	158439528	158439744	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_158439500_158439700
ES_00063664	chrX	+	327	1	Intergenic	novelGene_4515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	771	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTCAAAGACAATGGAGC	NA	False	NA	NA	False	NA	NA	NA	161618781	161619108	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_161618800_161619100
ES_00063666	chrX	+	205	1	Intergenic	novelGene_4524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAGACTTGTTAAGGTAG	NA	False	NA	NA	False	NA	NA	NA	163892226	163892431	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_163892200_163892400
ES_00063667	chrX	+	7752	6	ISM	ENSMUSG00000068270.16	ENSMUST00000089520.3	8201	8	5913	-4	5913	4	3prime_fragment	FALSE	canonical	3	8	junction_1	2.13541565040626	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCGTCTCTGATGTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	6495252	6549506	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_6497710_6503009_6503072_6535713_6536491_6541154_6541336_6544276_6544547_6545501
ES_00063668	chrX	+	1626	11	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	16	-19	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	64.5585780512551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATAAAAGGCCTTTGAG	3798	False	NA	-21	True	TTTAAA	-37	NA	7588247	7594402	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7588470_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ES_00063669	chrX	+	1647	11	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	41	-19	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	64.5585780512551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATAAAAGGCCTTTGAG	3823	False	NA	-21	True	TTTAAA	-37	NA	7588272	7594402	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7588516_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ES_00063671	chrX	+	1447	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	-3	-31	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	63.2250741399328	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTAATGTATATGAATAA	4052	False	NA	-33	True	TTTAAA	-25	NA	7588501	7594390	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
ES_00063674	chrX	+	2932	10	NIC	ENSMUSG00000000134.18	novel	6328	7	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	90.0647229551485	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTGAGTCTCCCGTTC	NA	False	NA	20	True	AATAAA	-31	NA	7628806	7641436	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7628870_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ES_00063675	chrX	+	3363	7	NNC	ENSMUSG00000009731.5	novel	5287	6	NA	NA	-16	-582	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	7.80313327381308	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGACTCTGTGGATTG	NA	False	NA	NA	False	AATAAA	-29	NA	7688511	7703937	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_7688630_7689987_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
ES_00063676	chrX	+	3197	11	NIC	ENSMUSG00000031154.16	novel	2543	10	NA	NA	-28	0	intron_retention	FALSE	canonical	3	18	junction_1	166.947446820848	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAGCAACTCTATTCTG	NA	False	NA	4	True	AATAAA	-16	NA	7707574	7741523	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7707640_7707725_7708708_7708836_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ES_00063677	chrX	+	761	2	FSM	ENSMUSG00000031158.12	ENSMUST00000150541.2	761	2	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATGGTTTTTGTTTTGTT	4812	False	NA	NA	False	NA	NA	NA	7772352	7773209	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7772631_7772726
ES_00063678	chrX	+	1128	1	FSM	ENSMUSG00000083518.2	ENSMUST00000117804.2	868	1	252	-512	252	512	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGTTGTTGTTG	1292	False	NA	NA	False	AATAAA	-15	NA	7900702	7901830	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7900700_7901800
ES_00063679	chrX	+	1646	3	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	-205	-10	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	48	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATCTGAAACTCCTGG	7446	False	NA	16	True	TATAAA	-6	NA	7915205	7939185	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_7915823_7936874_7937304_7938585
ES_00063680	chrX	+	1224	1	FSM	ENSMUSG00000081042.2	ENSMUST00000118546.2	820	1	184	-588	184	588	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGCCTTGGTCGTGGTG	5363	False	NA	NA	False	NA	NA	NA	7971716	7972940	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_7971700_7972900
ES_00063681	chrX	+	448	5	FSM	ENSMUSG00000079697.2	ENSMUST00000115561.2	444	5	0	-4	0	4	multi-exon	FALSE	canonical	0	0	junction_4	2.27760839478607	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGGTCCTCTGACACA	NA	False	NA	NA	False	NA	NA	NA	8740491	8746993	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8740607_8740905_8740996_8741470_8741521_8742125_8742202_8746876
ES_00063683	chrX	+	516	1	FSM	ENSMUSG00000083714.4	ENSMUST00000120058.2	516	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTTCAAGTGGACTGA	NA	False	NA	NA	False	NA	NA	NA	8909965	8910481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_8910000_8910500
ES_00063684	chrX	+	706	1	FSM	ENSMUSG00000079871.5	ENSMUST00000115987.3	360	1	-183	-163	-183	163	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGAGTGTTGCCTGTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	12518358	12519064	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_12518400_12519100
ES_00063685	chrX	+	8983	45	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	-22	-167	intron_retention	FALSE	canonical	3	36	junction_43	216.855670239162	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTTTGACTGTTAA	785	False	NA	NA	False	AATAAA	-43	NA	12937714	13035970	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031772_13032870_13032967_13035585
ES_00063686	chrX	+	12531	45	Fusion	ENSMUSG00000094574.2_ENSMUSG00000031010.18	novel	11887	45	NA	NA	-22	3843	intron_retention	FALSE	canonical	3	383	junction_13	181.435749789431	267	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	785	False	NA	NA	False	AATAAA	-16	NA	12937714	13049662	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13045681
ES_00063687	chrX	+	12359	45	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	135	0	intron_retention	FALSE	canonical	3	383	junction_13	181.435749789431	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	958	False	NA	NA	False	AATAAA	-16	NA	12937887	13039567	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ES_00063688	chrX	+	8553	27	NNC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	0	20191	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	236.631904619862	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	NA	False	NA	NA	False	AATAAA	-16	NA	12995298	13059758	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585_13039415_13059601
ES_00063689	chrX	+	2184	2	FSM	ENSMUSG00000037347.8	ENSMUST00000044138.8	2206	2	0	22	0	-22	multi-exon	FALSE	canonical	3	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAAACTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	19925798	19963738	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_19927448_19963203
ES_00063691	chrX	+	310	1	FSM	ENSMUSG00000081390.2	ENSMUST00000122019.2	1327	1	88	929	88	-929	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACACTTTCTACCGACAA	9408	False	NA	NA	False	NA	NA	NA	20394582	20394892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20394600_20394900
ES_00063692	chrX	+	203	2	Antisense	novelGene_ENSMUSG00000064398.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	260	junction_1	0	65	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGCCTTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	20401279	20491615	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_+_20401332_20491464
ES_00063693	chrX	+	3698	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115375.8	3698	24	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_1	114.836729664995	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCATTTCTACTTTCT	275	False	NA	28	True	AATAAA	-16	NA	20483741	20517127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20484322_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ES_00063695	chrX	+	3256	16	FSM	ENSMUSG00000031065.15	ENSMUST00000115364.8	3270	16	14	0	14	0	multi-exon	FALSE	canonical	3	24	junction_1	561.492914766815	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	1874	False	NA	18	True	ATTAAA	-20	NA	20554206	20566119	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20554601_20559562_20559771_20560145_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ES_00063698	chrX	+	263	2	NNC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-9	-18182	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATAGGTGTGTGAG	1114	False	NA	NA	False	NA	NA	NA	20664043	20699774	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20664121_20699588
ES_00063699	chrX	+	1494	11	FSM	ENSMUSG00000001127.13	ENSMUST00000148032.8	1474	11	-20	0	-9	0	multi-exon	FALSE	canonical	0	0	junction_10	115.810362230674	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGTTGTGTAGTTATTA	6285	False	NA	NA	False	NA	NA	NA	20714793	20720799	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20720500
ES_00063700	chrX	+	803	6	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	-17	612	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	51.9330338031585	112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCATGGTCATTGTGTT	NA	False	NA	7	True	NA	NA	NA	20828335	20853588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20828511_20828775_20828835_20833967_20834048_20851664_20851705_20852217_20852400_20853321
ES_00063701	chrX	+	1129	5	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-16	612	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	52.6355393246806	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCATGGTCATTGTGTT	NA	False	NA	7	True	NA	NA	NA	20828336	20853588	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_20828897_20833967_20834048_20851664_20851705_20852217_20852400_20853321
ES_00063702	chrX	+	908	9	FSM	ENSMUSG00000073247.4	ENSMUST00000101647.4	924	9	-1	17	-1	-17	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	34331035	34353952	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_34331174_34332639_34332763_34338370_34338438_34338976_34339012_34342138_34342265_34342573_34342638_34350827_34350910_34353360_34353460_34353778
ES_00063703	chrX	+	448	1	FSM	ENSMUSG00000081281.2	ENSMUST00000118173.2	797	1	417	-68	417	68	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGACACACCCCTAG	NA	False	NA	NA	False	AATAAA	-24	NA	35932286	35932734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_35932300_35932700
ES_00063704	chrX	+	715	6	FSM	ENSMUSG00000016308.13	ENSMUST00000202991.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_4	341.941749425249	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36137983	36146903	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146260_36146341_36146664
ES_00063706	chrX	+	808	4	Fusion	ENSMUSG00000051827.12_ENSMUSG00000079638.9	novel	795	4	NA	NA	-9	0	multi-exon	FALSE	canonical	3	15	junction_3	65.9140854951858	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36508619	36598459	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_+_36508740_36508901_36509314_36510828_36510875_36598229
ES_00063707	chrX	+	688	4	FSM	ENSMUSG00000095601.9	ENSMUST00000096459.11	828	4	140	0	11	0	multi-exon	FALSE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTGTCCCATGTGCCT	NA	False	NA	NA	False	NA	NA	NA	36562180	36566141	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_36562222_36562471_36562842_36564717_36564764_36565910
ES_00063708	chrX	+	691	4	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	29.4392028877595	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36593740	36598455	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36598312
ES_00063709	chrX	+	231	1	FSM	ENSMUSG00000081880.2	ENSMUST00000118988.2	1559	1	1456	-128	1456	128	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	40338907	40339138	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_40338900_40339100
ES_00063710	chrX	+	2936	22	NNC	ENSMUSG00000037005.17	novel	3498	21	NA	NA	-79	-7	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	10.3951410243488	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTTAACCTTGTGTGGG	NA	False	NA	NA	False	ATTAAA	-20	NA	47197522	47225540	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_47197615_47197937_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47210677_47210780_47211405_47211488_47211764_47211961_47212715_47212806_47213492_47213603_47214221_47214300_47215745_47215818_47217601_47217663_47218923_47218994_47219555_47219661_47220024_47220085_47220774_47220852_47223961_47224052_47224611
ES_00063711	chrX	+	340	1	FSM	ENSMUSG00000082192.3	ENSMUST00000121891.3	340	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATCAGAATCAGCAGCCT	NA	False	NA	NA	False	NA	NA	NA	48749836	48750176	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_48749800_48750200
ES_00063712	chrX	+	829	1	FSM	ENSMUSG00000083399.2	ENSMUST00000118188.2	673	1	19	-175	19	175	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTCTTGCCTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	49033530	49034359	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_49033500_49034400
ES_00063713	chrX	+	465	1	FSM	ENSMUSG00000051851.6	ENSMUST00000063384.4	401	1	-72	8	-72	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGCTACCCCACCCC	NA	False	NA	NA	False	GGGGCT	-9	NA	52609926	52610391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_52609900_52610400
ES_00063714	chrX	+	1108	8	NNC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	229	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.3710478826381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55182160	55198858	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_55182301_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ES_00063715	chrX	+	217	2	Intergenic	novelGene_4373	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATGCCAGTTTAAGTGT	NA	False	NA	NA	False	NA	NA	NA	55780147	55785362	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_55780173_55785170
ES_00063716	chrX	+	1707	1	FSM	ENSMUSG00000050900.6	ENSMUST00000120925.2	652	1	-76	-979	-76	979	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGACAAAACATTTGAATA	NA	False	NA	NA	False	NA	NA	NA	60828910	60830617	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_60828900_60830600
ES_00063717	chrX	+	1966	4	Genic_Genomic	ENSMUSG00000083576.2	novel	1100	1	NA	NA	-74793	366	multi-exon	FALSE	canonical	3	7	junction_1	10.2089285540757	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTGGCTTACTAAA	NA	False	NA	NA	False	AATAAA	-14	NA	61223860	61300119	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_61223947_61249243_61249365_61298244_61298791_61298906
ES_00063718	chrX	+	2060	3	Genic_Genomic	ENSMUSG00000083576.2	novel	1100	1	NA	NA	-57666	366	multi-exon	FALSE	canonical	2	10	junction_1	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTGGCTTACTAAA	NA	False	NA	NA	False	AATAAA	-14	NA	61240987	61300119	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_61241052_61249243_61249365_61298244
ES_00063719	chrX	+	937	5	FSM	ENSMUSG00000031337.17	ENSMUST00000152810.2	2353	5	0	1416	0	-1416	multi-exon	FALSE	canonical	3	45	junction_1	132.41884307001	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCACCTAGATACCCTC	NA	False	NA	NA	False	ATTAAA	-39	NA	70258690	70298491	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856
ES_00063720	chrX	+	3105	3	FSM	ENSMUSG00000031337.17	ENSMUST00000129722.2	3469	3	344	20	344	-20	multi-exon	FALSE	canonical	3	290	junction_2	11	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACCTTGACAAATCGGGC	NA	False	NA	NA	False	AAAACA	-2	NA	70345318	70359277	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_70346221_70351305_70351483_70357251
ES_00063722	chrX	+	2286	6	Genic_Genomic	ENSMUSG00000033343.2	novel	948	1	NA	NA	-3477	461	multi-exon	FALSE	canonical	2	4	junction_5	2.8	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTCGCCGGGCATCTG	NA	False	NA	NA	False	NA	NA	NA	71262145	71267031	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_71262501_71263739_71263837_71264233_71264433_71264562_71264653_71264786_71264860_71265559
ES_00063723	chrX	+	2902	6	NNC	ENSMUSG00000067771.10	novel	2773	4	NA	NA	685	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	21.0237960416286	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72161337	72172866	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_72161363_72166217_72166322_72166673_72166742_72167034_72167132_72168423_72168590_72170424
ES_00063724	chrX	+	1068	8	NIC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	20	314	combination_of_known_splicesites	FALSE	canonical	3	121	junction_7	152.49623615295	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTCATTTCTCATGA	NA	False	NA	NA	False	AATAAA	-22	NA	72192421	72202013	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ES_00063725	chrX	+	1142	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	22	314	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	176.825434751339	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTCATTTCTCATGA	NA	False	NA	NA	False	AATAAA	-22	NA	72192423	72202013	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_72192480_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ES_00063726	chrX	+	841	8	FSM	ENSMUSG00000067768.13	ENSMUST00000156188.8	827	8	-14	0	-14	0	multi-exon	FALSE	canonical	3	19	junction_2	111.552495192503	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAAGTAGAATATTTTTA	NA	False	NA	NA	False	AAGAAA	-1	NA	72257924	72265566	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72258088_72258379_72258463_72258846_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472
ES_00063727	chrX	+	281	2	Intergenic	novelGene_4391	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCCACATCAAGCCGGGC	NA	False	NA	NA	False	NA	NA	NA	72693715	72698381	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_72693852_72698236
ES_00063728	chrX	+	747	4	FSM	ENSMUSG00000002014.13	ENSMUST00000129239.2	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_3	71.4438396380137	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTCCTGTGTCTATGG	7248	False	NA	52	True	AATAAA	-34	NA	72832449	72834436	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964
ES_00063729	chrX	+	450	1	FSM	ENSMUSG00000080829.2	ENSMUST00000120692.2	801	1	259	92	259	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGAGGATTGTAGATATT	NA	False	NA	NA	False	NA	NA	NA	73050566	73051016	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_73050600_73051000
ES_00063730	chrX	+	980	3	ISM	ENSMUSG00000083847.2	ENSMUST00000121687.2	658	8	5682	-750	5682	750	3prime_fragment	FALSE	canonical	3	49	junction_1	132.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATCCTGTGATTTCCTGT	7537	False	NA	NA	False	NA	NA	NA	73745334	73748432	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_73745412_73747436_73747533_73747625
ES_00063731	chrX	+	1826	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8291	0	-1804	0	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147750	74153383	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ES_00063732	chrX	+	1085	1	FSM	ENSMUSG00000083736.2	ENSMUST00000121667.2	1250	1	64	101	64	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCCTTCCAGTAAGACC	5280	False	NA	NA	False	NA	NA	NA	74276732	74277817	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74276700_74277800
ES_00063733	chrX	+	2483	10	FSM	ENSMUSG00000031201.18	ENSMUST00000114074.8	2473	10	-10	0	0	0	multi-exon	FALSE	canonical	1	349	junction_4	251.832836972818	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAAAAGGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	74460305	74495314	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
ES_00063734	chrX	+	4910	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	1700	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_10	476.546283166704	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGGTCATGGTATTT	NA	False	NA	14	True	NA	NA	NA	74460305	74499307	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74460448_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289_74498147_74499157
ES_00063735	chrX	+	940	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	21033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	391.537788725431	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCACCCAGCAAATGA	NA	False	NA	NA	False	NA	NA	NA	74460305	74518640	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493739_74518607
ES_00063738	chrX	+	377	1	FSM	ENSMUSG00000081167.2	ENSMUST00000121800.2	454	1	71	6	71	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGTTGGAGACAATTAC	NA	False	NA	NA	False	NA	NA	NA	88002893	88003270	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_88002900_88003300
ES_00063739	chrX	+	404	1	FSM	ENSMUSG00000084060.4	ENSMUST00000121602.2	273	1	12	-143	12	143	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTTTTCCATAACAGAAA	NA	False	NA	NA	False	AATAAA	-1	NA	88048987	88049391	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_88049000_88049400
ES_00063740	chrX	+	1327	1	FSM	ENSMUSG00000094861.2	ENSMUST00000063726.5	1035	1	-27	-265	-27	265	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGTCTTCTCAGTAAG	NA	False	NA	NA	False	AATATA	-32	NA	90436078	90437405	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_90436100_90437400
ES_00063741	chrX	+	1566	1	FSM	ENSMUSG00000096072.2	ENSMUST00000101396.3	1035	1	-56	-475	-56	475	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCTCTGTCATTTC	NA	False	NA	NA	False	AATAAA	-21	NA	90523675	90525241	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_90523700_90525200
ES_00063742	chrX	+	538	2	FSM	ENSMUSG00000095110.2	ENSMUST00000088134.4	577	2	39	0	39	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGTCTCTGAGAATCT	NA	False	NA	NA	False	AATAAA	-19	NA	92199798	92200479	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_92199990_92200132
ES_00063743	chrX	+	5641	1	FSM	ENSMUSG00000073062.4	ENSMUST00000101388.4	5619	1	-22	0	-22	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCTGTGGTCTTATTT	NA	False	NA	NA	False	AATAAA	-26	NA	93768152	93773793	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_93768200_93773800
ES_00063746	chrX	+	2322	16	FSM	ENSMUSG00000019359.15	ENSMUST00000019503.14	2495	16	173	0	-71	0	multi-exon	FALSE	canonical	0	0	junction_2	0.573488351136175	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGGTCACAGTCTAATCA	NA	False	NA	NA	False	AATGAA	-14	NA	99773720	99782500	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_99773802_99775677_99775792_99776001_99776106_99776399_99776494_99776677_99776738_99776979_99777079_99777251_99777346_99777504_99777654_99777775_99777859_99777969_99778121_99779856_99780079_99780294_99780444_99781070_99781219_99781356_99781440_99781722_99781749_99781835
ES_00063747	chrX	+	6939	46	NIC	ENSMUSG00000079487.12	novel	6746	46	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_39	26.7088000479243	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100317651	100341071	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337228_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ES_00063748	chrX	+	1512	2	FSM	ENSMUSG00000047797.15	ENSMUST00000052130.14	1565	2	53	0	53	0	multi-exon	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTTTGAGTGTTGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	100420931	100429235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100420966_100427757
ES_00063749	chrX	+	1511	2	FSM	ENSMUSG00000047797.15	ENSMUST00000119190.2	1585	2	74	0	74	0	multi-exon	FALSE	canonical	2	2	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTTTGAGTGTTGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	100427415	100429235	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100427449_100427757
ES_00063750	chrX	+	212	1	FSM	ENSMUSG00000083897.2	ENSMUST00000119596.2	212	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGGCTCCTTCCCATGG	NA	False	NA	NA	False	NA	NA	NA	100522953	100523165	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100523000_100523200
ES_00063751	chrX	+	219	2	Genic_Genomic	ENSMUSG00000031314.19	novel	8054	41	NA	NA	5128	-58	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGGGGAAAACGCATTT	847	False	NA	NA	False	NA	NA	NA	100626962	100645337	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_+_100627157_100645312
ES_00063752	chrX	+	807	1	FSM	ENSMUSG00000082284.2	ENSMUST00000119546.2	410	1	-82	-315	-82	315	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTGGATTTTTTAAAAATA	NA	False	NA	NA	False	AATAAA	-30	NA	100868038	100868845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100868000_100868800
ES_00063753	chrX	+	553	2	FSM	ENSMUSG00000079481.12	ENSMUST00000125115.2	2445	2	-21	1913	-21	-1913	multi-exon	FALSE	canonical	2	6	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGCTACCAGGGCCAAAC	NA	False	NA	NA	False	NA	NA	NA	100892969	100991328	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_100893454_100991259
ES_00063754	chrX	+	312	1	FSM	ENSMUSG00000081263.2	ENSMUST00000117752.2	357	1	-14	59	-14	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAGAAAATCATTGTGAAA	9257	False	NA	NA	False	NA	NA	NA	101251993	101252305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_101252000_101252300
ES_00063755	chrX	+	1200	7	FSM	ENSMUSG00000073027.11	ENSMUST00000101324.9	1200	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.5723301886761	615	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTGTCCTGTGATT	3864	False	NA	NA	False	NA	NA	NA	101751470	101758815	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_101751533_101754965_101755124_101755540_101755600_101755900_101756038_101756834_101756896_101757072_101757251_101758270
ES_00063759	chrX	+	237	1	FSM	ENSMUSG00000082245.2	ENSMUST00000120712.2	1095	1	34	824	34	-824	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAGAAAAAAAATGAAAGA	NA	False	NA	NA	False	AAGAAA	-23	NA	104184488	104184725	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_104184500_104184700
ES_00063760	chrX	+	463	1	FSM	ENSMUSG00000081748.2	ENSMUST00000118414.2	156	1	-311	4	-311	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGGAAGGACTGAAGCAT	NA	False	NA	NA	False	NA	NA	NA	107936790	107937253	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_107936800_107937300
ES_00063761	chrX	+	614	3	ISM	ENSMUSG00000086629.9	ENSMUST00000123040.8	601	6	66886	-338	-1922	-170	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATATGATTCAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	107945069	108018342	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_107945162_108015726_108015777_108017870
ES_00063762	chrX	+	718	2	FSM	ENSMUSG00000047079.2	ENSMUST00000062695.2	743	2	25	0	25	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTCATTTTCTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	113817303	113818207	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_113817472_113817657
ES_00063763	chrX	+	512	2	Intergenic	novelGene_4458	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGTTTCCGTGTCGTTATT	NA	False	NA	NA	False	NA	NA	NA	113934312	113942635	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113934470_113942280
ES_00063764	chrX	+	445	1	FSM	ENSMUSG00000082927.4	ENSMUST00000121760.2	1008	1	606	-43	606	43	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCCTTGGTTGCTGAG	NA	False	NA	NA	False	AAGAAA	-40	NA	119071012	119071457	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_119071000_119071500
ES_00063766	chrX	+	2453	3	FSM	ENSMUSG00000079450.12	ENSMUST00000113343.8	3301	3	62	786	-2	-786	multi-exon	FALSE	canonical	1	1	junction_2	3	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATATCATTTAATTTTA	NA	False	NA	NA	False	ATTAAA	-24	NA	122013253	122054562	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_122013335_122027150_122027267_122052306
ES_00063767	chrX	+	4135	19	NNC	ENSMUSG00000034480.19	novel	3742	27	NA	NA	15	-41305	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_18	25.5326588248593	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTAATGTTATCGTCTT	NA	False	NA	NA	False	ATTAAA	-13	NA	128650505	128901974	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128900132
ES_00063768	chrX	+	2513	11	ISM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	154	10183	7	0	5prime_fragment	FALSE	canonical	3	157	junction_8	166.206979396173	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132960089	132976612	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261
ES_00063769	chrX	+	3494	22	NIC	ENSMUSG00000031262.13	novel	3227	23	NA	NA	3	4	intron_retention	FALSE	canonical	3	156	junction_8	43.2473243768865	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGAATTTTTTTTTTTT	NA	False	NA	10	True	AATAAA	-21	NA	133208906	133263392	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ES_00063770	chrX	+	3762	15	NIC	ENSMUSG00000031262.13	novel	3085	22	NA	NA	11573	-2	intron_retention	FALSE	canonical	3	156	junction_1	15.5629072358815	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGGTATTTCCGAATTT	NA	False	NA	1	True	AATAAA	-12	NA	133224319	133263383	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ES_00063771	chrX	+	7795	4	ISM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	1507	-5	1507	5	3prime_fragment	FALSE	canonical	2	5	junction_1	2.44948974278318	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTGTCTTCATTCTTGG	NA	False	NA	NA	False	AATAAA	-29	NA	133588774	133597511	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_133588856_133589198_133589282_133589568_133589654_133589965
ES_00063772	chrX	+	2291	5	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	26.9664142963057	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618723	133622657	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620823
ES_00063773	chrX	+	2085	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618761	133622657	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
ES_00063774	chrX	+	268	1	FSM	ENSMUSG00000081972.2	ENSMUST00000122201.2	494	1	203	23	203	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGAAGCCATCTCCCCT	NA	False	NA	NA	False	NA	NA	NA	133632522	133632790	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_133632500_133632800
ES_00063776	chrX	+	3836	5	FSM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	73.5272058492637	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134274032	134284142	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_134274160_134274357_134274477_134278675_134278976_134280276_134280862_134281437
ES_00063778	chrX	+	872	9	NIC	ENSMUSG00000072966.12	novel	880	7	NA	NA	17	4037	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	57.1291026973118	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTGTTTTGTTTTT	NA	False	NA	NA	False	AATGAA	-20	NA	134739871	134749516	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326_134742476_134746603_134746703_134749426
ES_00063779	chrX	+	902	4	NNC	ENSMUSG00000046432.13	novel	930	3	NA	NA	0	2385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2229.73605812188	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAACAACAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	135171053	135175112	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_135171151_135171558_135171632_135172011_135172711_135175079
ES_00063781	chrX	+	2209	4	FSM	ENSMUSG00000031428.12	ENSMUST00000113067.8	2259	4	50	0	46	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGCAGGGGTGTTCTATT	7951	False	NA	7	True	AATAAA	-23	NA	135893953	135897127	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_135894102_135894455_135894511_135894679_135894820_135895261
ES_00063782	chrX	+	3795	24	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_19	302.220546917654	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118801	143157446	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ES_00063785	chrX	+	2040	7	NNC	ENSMUSG00000095872.8	novel	2027	7	NA	NA	9140	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	6.15539510420646	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTGTTTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	146558126	146616452	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_146558232_146589721_146589848_146590566_146590647_146594315_146595275_146608125_146608208_146609013_146609064_146615814
ES_00063786	chrX	+	1530	5	ISM	ENSMUSG00000072931.5	ENSMUST00000112804.3	2029	7	18006	230	18006	-230	3prime_fragment	TRUE	canonical	0	0	junction_1	7.58287544405155	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAACCCATACAAGTGA	NA	False	NA	NA	False	NA	NA	NA	146793994	146815940	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_146794024_146797694_146798654_146807824_146807907_146808712_146808763_146815530
ES_00063789	chrX	+	2043	7	FSM	ENSMUSG00000096834.8	ENSMUST00000101186.10	2026	7	-17	0	-17	0	multi-exon	TRUE	canonical	0	0	junction_1	5.30461015427985	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147446576	147486845	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469273_147478430_147478513_147479317_147479368_147486208
ES_00063790	chrX	+	213	3	NNC	ENSMUSG00000094941.2	novel	2022	7	NA	NA	-2737	-22162	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.5	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTAAGTGAACACTAAGG	NA	False	NA	NA	False	NA	NA	NA	148052635	148065837	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_148052646_148064915_148065042_148065760
ES_00063791	chrX	+	1717	4	ISM	ENSMUSG00000094941.2	ENSMUST00000179021.2	2022	7	14146	7	14146	-7	3prime_fragment	TRUE	canonical	0	0	junction_1	4.96655480858378	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTATTTCTTTTTTGTG	NA	False	NA	NA	False	AATAAA	-12	NA	148069518	148087992	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_148070472_148079665_148079748_148080553_148080604_148087360
ES_00063794	chrX	+	6354	22	FSM	ENSMUSG00000041229.16	ENSMUST00000168501.8	6359	22	5	0	5	0	multi-exon	TRUE	canonical	2	12	junction_1	20.027645292538	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTTGCTTGACATTA	NA	False	NA	4	True	GATAAA	-17	NA	150303672	150416853	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_150304434_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ES_00063795	chrX	+	5704	21	NNC	ENSMUSG00000041229.16	novel	6359	22	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.7762486528048	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTGCTTGACATTATT	NA	False	NA	6	True	GATAAA	-19	NA	150303672	150416855	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_150304085_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ES_00063797	chrX	+	4019	26	NIC	ENSMUSG00000025261.19	novel	5010	25	NA	NA	-9	214	intron_retention	FALSE	canonical	3	15	junction_1	33.0625104914917	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	150586333	150655408	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_150586566_150589267_150589404_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475
ES_00063798	chrX	+	2950	24	ISM	ENSMUSG00000025261.19	ENSMUST00000026292.15	14579	83	106	63609	86	-390	5prime_fragment	FALSE	canonical	3	45	junction_16	23.5043333494141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTGTAGTTTTGCCAT	NA	False	NA	NA	False	AGTAAA	-26	NA	150586428	150654804	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475
ES_00063800	chrX	+	7364	7	NNC	ENSMUSG00000041649.14	novel	4752	7	NA	NA	-54	2793	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	63.3394733865769	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGGTTTTGTGTTTAAT	3931	False	NA	18	True	AATAAA	-19	NA	152020407	152181921	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_152020503_152020946_152021089_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ES_00063803	chrX	+	365	1	FSM	ENSMUSG00000082002.2	ENSMUST00000122274.2	697	1	153	179	153	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTTTTCTTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	156324014	156324379	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_156324000_156324400
ES_00063805	chrX	+	3169	15	NNC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	-21	-9	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_14	55.2610225407103	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGGAACTTTTTGT	NA	False	NA	NA	False	ATTAAA	-7	NA	158197546	158281570	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272_158272496_158273675_158273781_158275319_158275408_158275893_158276081_158279030_158279123_158280579
ES_00063806	chrX	+	3380	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_11	167.554634539172	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTGAGAGCATTCTTT	NA	False	NA	22	True	AATAAA	-35	NA	158315674	158376076	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158374327_158374354_158375066
ES_00063807	chrX	+	3261	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_9	188.637261772232	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTGAGAGCATTCTTT	NA	False	NA	22	True	AATAAA	-35	NA	158315677	158376076	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340441_158340554_158341330_158341395_158342833_158342950_158349423_158349452_158350914_158351011_158357940_158358094_158375066
ES_00063808	chrX	+	4601	26	FSM	ENSMUSG00000031298.16	ENSMUST00000112404.9	4601	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	3.22391066873758	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTTAAGTTTGGTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	159173720	159281066	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_159173746_159213345_159213391_159221190_159221310_159244338_159244378_159246323_159246366_159248573_159248628_159251887_159251944_159252763_159252820_159254751_159254792_159255307_159255346_159257699_159257795_159258486_159258554_159260044_159260437_159261980_159262144_159263222_159263380_159264542_159264687_159265284_159265408_159266078_159266125_159266229_159266334_159267135_159267258_159268639_159268909_159270661_159270762_159271679_159271964_159274393_159274496_159275595_159275749_159279300
ES_00063809	chrX	+	4507	26	NIC	ENSMUSG00000000037.18	novel	2931	23	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_18	105.89310836877	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACAGCAATTAACAGCT	NA	False	NA	2	True	AATAAA	-11	NA	159900160	160041192	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_+_159900321_159904019_159904098_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00063810	chrX	+	3301	27	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12787	6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	111.428593103147	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTCAGTTATTTTTATT	8032	False	NA	NA	False	ATTAAA	-20	NA	159932958	160039902	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00063811	chrX	+	4362	24	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-5654	-5	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	106.161164352296	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAACCACAGCAATTAA	NA	False	NA	-3	True	AATAAA	-6	NA	159940091	160041187	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_159940262_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ES_00063813	chrX	+	1288	9	FSM	ENSMUSG00000108981.2	ENSMUST00000207353.2	1272	9	-16	0	12	0	multi-exon	TRUE	canonical	0	0	junction_5	6.32331993497087	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTTTGGAATAATACAT	NA	False	NA	NA	False	NA	NA	NA	160080746	160116203	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_160080868_160083835_160084019_160090688_160090874_160106160_160106266_160107235_160107483_160108813_160108871_160109457_160109572_160114803_160114930_160116053
ES_00063814	chrX	+	5033	15	FSM	ENSMUSG00000108981.2	ENSMUST00000207320.2	5010	15	-23	0	-11	0	multi-exon	FALSE	canonical	1	1	junction_1	5.75210697865378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACATAAATATTTTGTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	160081351	160149248	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_160081394_160083835_160084019_160090688_160090874_160106160_160106266_160107235_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
ES_00063815	chrX	+	2011	1	FSM	ENSMUSG00000082625.2	ENSMUST00000119454.2	2281	1	233	37	233	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACTGAAAAGACAGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	161134824	161136835	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_161134800_161136800
ES_00063817	chrX	+	2320	18	NNC	ENSMUSG00000031360.15	novel	3353	19	NA	NA	-5	-17531	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_17	53.6018901696366	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	161684622	161796784	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161796315
ES_00063820	chrX	+	409	1	FSM	ENSMUSG00000080834.2	ENSMUST00000118058.2	277	1	-141	9	-141	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTATTAATTCTTGAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	163646461	163646870	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_163646500_163646900
ES_00063821	chrX	+	1928	5	FSM	ENSMUSG00000040621.15	ENSMUST00000087169.11	1928	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.8371663140649	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGACTGGATTTGATCT	NA	False	NA	NA	False	NA	NA	NA	164953490	164973506	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_+_164953547_164961529_164961639_164961787_164961827_164963348_164963806_164972239
ES_00063822	chrX	+	2028	3	NNC	ENSMUSG00000095562.9	novel	597	3	NA	NA	-390	209	intron_retention	FALSE	canonical	3	442	junction_2	29.5	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGACCCTCGCCCCGCTGG	NA	False	NA	NA	False	NA	NA	NA	168792264	168802004	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_+_168792487_168792588_168794060_168801669
ES_00063826	chrX	-	709	1	FSM	ENSMUSG00000081232.4	ENSMUST00000122467.2	2158	1	1673	-224	1673	224	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATATATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	5612265	5611556	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_5611600_5612300
ES_00063827	chrX	-	8860	16	NNC	ENSMUSG00000004317.15	novel	3052	15	NA	NA	54	19	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	20.0288680547742	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGAACATTTTGAGTGT	3185	False	NA	19	True	AATAAA	-41	NA	7185543	7020029	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7123242_7123279_7182897_7183063_7184640_7184728_7185344
ES_00063828	chrX	-	3240	1	FSM	ENSMUSG00000046269.18	ENSMUST00000115744.2	3240	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAATTTTATTTGGACTG	NA	False	NA	NA	False	NA	NA	NA	7242069	7238829	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7238800_7242100
ES_00063829	chrX	-	3883	11	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_10	13.1057239403247	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGAGTCTCTGTCTG	NA	False	NA	-4	True	AATAAA	-14	NA	7617134	7597952	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7606587_7606645_7616836
ES_00063830	chrX	-	384	1	FSM	ENSMUSG00000082054.2	ENSMUST00000117520.2	713	1	228	101	228	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGCTTGGCAACCATT	NA	False	NA	NA	False	AAAACA	-21	NA	7816879	7816495	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_7816500_7816900
ES_00063832	chrX	-	3692	11	NNC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	9	junction_10	12.0287156421623	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCCTCTCTTCATTTG	6905	False	NA	1	True	AATAAA	-21	NA	7999063	7989539	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_7991381_7991484_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525_7998606_7999008
ES_00063834	chrX	-	1224	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	114	0	7	0	multi-exon	FALSE	canonical	3	764	junction_2	192.247597875471	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	6492	False	NA	-7	True	ATTAAA	-25	NA	8012005	8008597	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ES_00063836	chrX	-	1616	1	FSM	ENSMUSG00000083670.2	ENSMUST00000119858.2	360	1	100	-1356	100	1356	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAGGGGACCCTGAAGAT	NA	False	NA	NA	False	AGTAAA	-24	NA	9194247	9192631	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_9192600_9194200
ES_00063837	chrX	-	6223	15	NNC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	50.4390923869207	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAGTACTTTGCATCC	NA	False	NA	-5	True	AATAAA	-20	NA	11946781	11902977	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946764
ES_00063838	chrX	-	6736	30	NIC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	92	-3	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	19.1554750278713	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCAACTCTCTTTGGTG	NA	False	NA	-6	True	AATAAA	-25	NA	12628220	12541610	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ES_00063839	chrX	-	997	1	FSM	ENSMUSG00000080914.2	ENSMUST00000117402.2	997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACT	NA	False	NA	NA	False	NA	NA	NA	13193258	13192261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_13192300_13193300
ES_00063840	chrX	-	8260	25	FSM	ENSMUSG00000031012.18	ENSMUST00000115436.9	8260	25	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	34.3371508799952	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACGTGTCTCCTCAGATT	NA	False	NA	NA	False	AATAAA	-19	NA	13712780	13383318	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ES_00063841	chrX	-	213	1	FSM	ENSMUSG00000081735.2	ENSMUST00000122391.2	333	1	174	-54	174	54	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGTGAATGTGTAATTAA	NA	False	NA	NA	False	AATAAA	-28	NA	19629330	19629117	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_19629100_19629300
ES_00063842	chrX	-	275	1	FSM	ENSMUSG00000084137.2	ENSMUST00000119994.2	1072	1	159	638	159	-638	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTAACAACTTCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	20249901	20249626	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20249600_20249900
ES_00063843	chrX	-	520	7	NNC	ENSMUSG00000001134.10	novel	875	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	227.131386353068	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828204	20818161	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827960_20828026_20828172
ES_00063844	chrX	-	469	5	FSM	ENSMUSG00000054737.12	ENSMUST00000133186.2	739	5	270	0	-3	0	multi-exon	FALSE	canonical	1	1	junction_4	19.3261480900877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCAAGTTAGACTCCCTA	3242	False	NA	NA	False	GATAAA	-18	NA	20928285	20897827	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926763_20928181
ES_00063845	chrX	-	3378	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3752	77887	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	413.376474143123	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTCATGAGACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	23185170	23007622	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_23007648_23085508_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
ES_00063846	chrX	-	3274	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3370	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227922	23085524	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
ES_00063847	chrX	-	3272	10	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	389.833899418461	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23231291	23085524	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
ES_00063849	chrX	-	405	1	Intergenic	novelGene_4338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGCTGCAGACTCTGAC	NA	False	NA	NA	False	NA	NA	NA	29488598	29488193	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_29488200_29488600
ES_00063850	chrX	-	862	9	FSM	ENSMUSG00000094759.8	ENSMUST00000180344.8	907	9	44	1	44	-1	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGTCTCCTATGAAAC	NA	False	NA	NA	False	AATAAA	-13	NA	30542544	30519661	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_30519835_30520153_30520253_30522701_30522784_30530981_30531046_30531357_30531484_30534607_30534643_30535181_30535249_30540856_30540980_30542451
ES_00063851	chrX	-	5316	5	NIC	ENSMUSG00000059708.13	novel	1370	6	NA	NA	-49	135	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	23.710493457539	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGACTATTGACTGATCA	NA	False	NA	NA	False	AATAAA	-18	NA	35909097	35871831	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35908702
ES_00063852	chrX	-	2111	11	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	0	33777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.1903820740522	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACAAATAAAAGTAGCACC	NA	False	NA	NA	False	NA	NA	NA	36253144	36141201	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_36141236_36179484_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ES_00063853	chrX	-	598	4	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	0	61266	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6073.64307662396	2110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAGAAAGAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	36349055	36284906	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_36284933_36346212_36346403_36347637_36347742_36348777
ES_00063854	chrX	-	288	1	Intergenic	novelGene_4349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTATTGTTTTGAGATA	NA	False	NA	NA	False	AATACA	-35	NA	36364983	36364695	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_36364700_36365000
ES_00063855	chrX	-	753	3	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	4160	-17	4160	17	3prime_fragment	FALSE	canonical	3	117	junction_2	2	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTCATGTGTCTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	36481751	36477439	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_36477701_36479202_36479249_36481305
ES_00063857	chrX	-	359	3	NNC	ENSMUSG00000081133.3	novel	451	3	NA	NA	3037	211	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	4	3326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCAATTGCCCTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	37031442	37029481	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_37029729_37030445_37030512_37031396
ES_00063858	chrX	-	3641	10	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	0	80903	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.301413444618	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCCCAGTGGCATATCCC	NA	False	NA	NA	False	AAAACA	-39	NA	37545331	37409330	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_37409356_37508371_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ES_00063859	chrX	-	1272	1	NIC	ENSMUSG00000016534.16	novel	1769	9	NA	NA	36817	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	37495210	37493938	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_37493900_37495200
ES_00063860	chrX	-	7691	39	NIC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	5	-1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	44.1826980086561	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTGTATATTGTTACT	NA	False	NA	0	True	AATAAA	-25	NA	41000773	40883868	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_40886657_40891823_40891864_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901453_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ES_00063863	chrX	-	5040	23	NIC	ENSMUSG00000031099.17	novel	4798	23	NA	NA	3	-3	intron_retention	FALSE	canonical	2	9	junction_16	5.32517023357272	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTATTTCCTGTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	46981426	46898249	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
ES_00063864	chrX	-	3371	10	NIC	ENSMUSG00000036985.13	novel	2982	10	NA	NA	-30	2	combination_of_known_junctions	FALSE	canonical	2	7	junction_9	37.8235017409893	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTCCTCCTTCCTC	NA	False	NA	0	True	ATTAAA	-18	NA	47297594	47260843	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47296999
ES_00063866	chrX	-	2125	17	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	0	38639	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.289821656092	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAACCTGGGCATGGTGA	NA	False	NA	NA	False	NA	NA	NA	47602303	47525181	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_47525207_47563820_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ES_00063867	chrX	-	215	1	Intergenic	novelGene_4362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCAAGAAAATTTTTACTA	NA	False	NA	NA	False	AGTAAA	-18	NA	47561188	47560973	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_47561000_47561200
ES_00063868	chrX	-	4076	21	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	26.1914108058348	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATCTAATACGAATTCTT	NA	False	NA	51	True	AATAAA	-29	NA	47683268	47630494	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47682390_47682476_47683240
ES_00063870	chrX	-	329	1	Intergenic	novelGene_4365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTTCATGCTAAGG	NA	False	NA	NA	False	NA	NA	NA	47684985	47684656	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_47684700_47685000
ES_00063871	chrX	-	949	6	FSM	ENSMUSG00000031109.17	ENSMUST00000137518.8	968	6	0	19	0	-19	multi-exon	FALSE	canonical	0	0	junction_1	20.1395134002786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGCATACATTCTGA	NA	False	NA	NA	False	AATAAA	-16	NA	48377089	48154335	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_48154678_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
ES_00063872	chrX	-	215	3	Antisense	novelGene_ENSMUSG00000082347.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTCTCAGCCAAAATCTG	1194	False	NA	NA	False	AAAAAG	-20	NA	48283078	48232084	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrX_-_48232098_48235222_48235248_48282901
ES_00063873	chrX	-	2959	3	NIC	ENSMUSG00000085396.8	novel	884	5	NA	NA	64	-1	intron_retention	FALSE	canonical	3	47	junction_1	8.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTGAGTCATTTCGTAA	NA	False	NA	-8	True	AATAAA	-16	NA	49651684	49644628	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_49647262_49649685_49649884_49651556
ES_00063874	chrX	-	6334	24	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_16	31.9829822424222	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGTGAAGATTGGAAAGG	NA	False	NA	-7	True	AATAAA	-20	NA	49724180	49651999	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49684337_49684493_49687010_49687166_49689620_49689776_49692247_49692403_49694952_49695040_49695839_49695982_49697347_49697485_49697563_49697692_49701581_49701728_49704237_49704393_49715313_49715387_49716083_49716187_49719767_49719873_49723821
ES_00063875	chrX	-	6960	9	NNC	ENSMUSG00000055780.11	novel	4133	9	NA	NA	73	2880	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.2217598778293	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGACTCAATAGTTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	50889948	50839955	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_50846351_50854031_50854113_50882016_50882050_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
ES_00063876	chrX	-	7037	9	NNC	ENSMUSG00000055780.11	novel	4133	9	NA	NA	62	2880	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	8.24526379202024	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGACTCAATAGTTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	50889959	50839955	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50887774_50887874_50889689_50889806_50889878
ES_00063877	chrX	-	295	1	FSM	ENSMUSG00000070106.3	ENSMUST00000093598.3	75	1	-132	-88	-132	88	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTTTTTTTTTTTTTTTT	9839	False	NA	NA	False	NA	NA	NA	51830776	51830481	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_51830500_51830800
ES_00063878	chrX	-	3612	10	NNC	ENSMUSG00000036022.16	novel	4334	9	NA	NA	-62	4	at_least_one_novel_splicesite	TRUE	canonical	3	9	junction_1	31.8956632370818	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAAAAGTCTGCCTCTCT	NA	False	NA	-9	True	AATAAA	-28	NA	52358744	52332297	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52334249_52335026_52335168_52342912_52343010_52347833_52347899_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
ES_00063879	chrX	-	930	5	ISM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	-57	2614	-57	-2601	5prime_fragment	FALSE	canonical	3	89	junction_2	3.96074487943871	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATAGACGTGTAAGTG	NA	False	NA	NA	False	AATACA	-3	NA	52459436	52436498	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ES_00063881	chrX	-	1354	10	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-91	84404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.772711719051	227	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTTGTGCCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	52759889	52660463	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52660502_52744866_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ES_00063882	chrX	-	1011	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	2	-1	at_least_one_novel_splicesite	TRUE	canonical	3	47	junction_7	85.2532840949813	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGTGGCAAATAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	52799661	52785715	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
ES_00063883	chrX	-	866	1	FSM	ENSMUSG00000082253.4	ENSMUST00000120850.2	866	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGAAGTTGAAGACTTT	NA	False	NA	NA	False	NA	NA	NA	55201753	55200887	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_55200900_55201800
ES_00063884	chrX	-	4104	4	NNC	ENSMUSG00000061273.4	novel	4234	4	NA	NA	124	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	63.8870531137222	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCTTGTGTTTGGTAGT	NA	False	NA	-9	True	AATAAA	-12	NA	55643305	55630873	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_55634664_55636437_55636538_55640749_55640803_55643144
ES_00063885	chrX	-	2886	16	FSM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	7	-2	-5	2	multi-exon	FALSE	canonical	2	2	junction_7	2.18682926224756	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGTTGTCTCTTTTTTG	NA	False	NA	NA	False	AGTAAA	-29	NA	55867679	55843215	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_55843463_55844649_55845030_55846362_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977_55855151_55855397_55855526_55856222_55856912_55858674_55858768_55860884_55860994_55862635_55862800_55864035_55864114_55864203_55864297_55867596
ES_00063886	chrX	-	2494	5	FSM	ENSMUSG00000031133.13	ENSMUST00000151768.2	2696	5	202	0	202	0	multi-exon	FALSE	canonical	1	1	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCTGTGTTTTATTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	56286047	56276844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_56279012_56280216_56280272_56282345_56282446_56284525_56284604_56285953
ES_00063887	chrX	-	2341	10	NIC	ENSMUSG00000031134.17	novel	2139	10	NA	NA	-17	182	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	18.9489242015229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56438358	56428707	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437062_56438211
ES_00063889	chrX	-	2045	9	NIC	ENSMUSG00000031134.17	novel	2108	9	NA	NA	-1	9	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	19.0028780714922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAACCGATGCTTGCTCT	NA	False	NA	-3	True	AATAAA	-28	NA	56438323	56431708	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
ES_00063891	chrX	-	3887	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_8	148.257910963514	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATACTCTGGTGTTCGTGT	NA	False	NA	-5	True	AATAAA	-26	NA	59223621	59101318	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59126519_59126598_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ES_00063892	chrX	-	2736	15	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-56488	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_14	93.2665972536004	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATCTGTTCTACTTTGT	NA	False	NA	-3	True	NA	NA	NA	59223621	59157806	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ES_00063893	chrX	-	6161	29	NIC	ENSMUSG00000062949.14	novel	6044	30	NA	NA	-160	5	combination_of_known_junctions	FALSE	canonical	1	3	junction_22	20.1540938769273	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATTCGAGTGTCTTGTTT	NA	False	NA	-2	True	AATAAA	-19	NA	59449332	59268644	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
ES_00063895	chrX	-	1615	1	FSM	ENSMUSG00000081752.4	ENSMUST00000121773.2	1101	1	-57	-457	-57	457	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAACTCTCAATTCTGAAT	NA	False	NA	NA	False	ATTAAA	-44	NA	61820348	61818733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_61818700_61820300
ES_00063896	chrX	-	340	1	FSM	ENSMUSG00000070078.3	ENSMUST00000093570.3	75	1	-337	72	-337	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTAATTTGTTGTCCATC	NA	False	NA	NA	False	ATTAAA	-20	NA	65843240	65842900	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_65842900_65843200
ES_00063897	chrX	-	242	1	FSM	ENSMUSG00000084193.2	ENSMUST00000120791.2	1839	1	1657	-60	1657	60	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTGCAAGAAAATTAGGA	NA	False	NA	NA	False	NA	NA	NA	69464503	69464261	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_69464300_69464500
ES_00063898	chrX	-	345	1	FSM	ENSMUSG00000084185.2	ENSMUST00000119410.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTTTGTTAAGTTGGC	NA	False	NA	NA	False	NA	NA	NA	69697156	69696811	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_69696800_69697200
ES_00063900	chrX	-	1611	3	FSM	ENSMUSG00000031340.9	ENSMUST00000153740.2	1938	3	66	261	66	-261	multi-exon	FALSE	canonical	0	0	junction_1	1	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTACAGAATTTTGATG	NA	False	NA	NA	False	NA	NA	NA	71318343	71312834	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_71312903_71313290_71314742_71318251
ES_00063901	chrX	-	1188	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	100.580502583751	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126122	72117950	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125964
ES_00063902	chrX	-	1568	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	7	16	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_7	138.166418436874	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGGTATTTGGGGTTTT	NA	False	NA	NA	False	ATTAAA	-30	NA	72161301	72151224	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161199
ES_00063903	chrX	-	1503	9	FSM	ENSMUSG00000031362.18	ENSMUST00000068551.9	1500	9	0	-3	0	3	multi-exon	FALSE	canonical	1	2	junction_7	125.099897581893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTTTGAATGTCTCCTA	NA	False	NA	NA	False	NA	NA	NA	72286674	72277290	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286219_72286267_72286581
ES_00063904	chrX	-	1137	9	NNC	ENSMUSG00000031362.18	novel	1500	9	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	125.741736806042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTTTCAGACTTGTTGG	NA	False	NA	-17	True	AATAAA	-6	NA	72286674	72277693	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286557
ES_00063905	chrX	-	1009	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	0	-471	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_7	157.992508218147	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGCTTTCATTTC	NA	False	NA	NA	False	AATAAA	-16	NA	72336582	72326972	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
ES_00063906	chrX	-	1223	13	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	205	junction_10	516.424862771816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGGACTCTCTTCTCAC	NA	False	NA	-108	True	NA	NA	NA	72830228	72822648	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830133
ES_00063908	chrX	-	235	2	FSM	ENSMUSG00000031391.19	ENSMUST00000135104.2	627	2	392	0	-260	0	multi-exon	FALSE	canonical	3	4	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAAGGTCCTCCTGCACC	NA	False	NA	NA	False	GATAAA	-1	NA	72900628	72900284	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72900400_72900508
ES_00063909	chrX	-	719	4	ISM	ENSMUSG00000031389.18	ENSMUST00000114404.8	2895	22	-42	11305	0	404	5prime_fragment	FALSE	canonical	3	29	junction_1	2.44948974278318	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTAGGTGAAATGGCCCA	NA	False	NA	NA	False	NA	NA	NA	72954877	72949586	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_72949826_72950034_72950198_72950274_72950483_72954768
ES_00063911	chrX	-	1407	4	FSM	ENSMUSG00000031387.15	ENSMUST00000146371.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	3	2042	junction_3	97.9841256984461	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATCATTGAGTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	72974347	72971844	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_72971967_72972721_72973869_72974013_72974124_72974319
ES_00063913	chrX	-	3625	14	NIC	ENSMUSG00000031392.19	novel	3835	14	NA	NA	15	0	intron_retention	FALSE	canonical	3	36	junction_3	98.3373014276424	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATATGCCTTTTAATTTT	NA	False	NA	-4	True	NA	NA	NA	73067399	73057523	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_73059108_73060153_73060304_73060735_73061037_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ES_00063917	chrX	-	627	3	FSM	ENSMUSG00000079536.2	ENSMUST00000114125.2	627	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTACCAGATACAAGAA	NA	False	NA	NA	False	NA	NA	NA	73525005	73523892	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73524038_73524213_73524343_73524652
ES_00063918	chrX	-	581	1	FSM	ENSMUSG00000080777.2	ENSMUST00000122392.2	300	1	13	-294	13	294	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAGAAACTTAGGTGGTG	NA	False	NA	NA	False	AATACA	-15	NA	73757394	73756813	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_73756800_73757400
ES_00063921	chrX	-	2477	6	NIC	ENSMUSG00000031200.17	novel	980	6	NA	NA	262	5599	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	21.3410402745508	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTTTGTTACTAAATG	NA	False	NA	NA	False	AATAAA	-18	NA	74459762	74448450	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_74448825_74453151_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620
ES_00063922	chrX	-	4036	9	FSM	ENSMUSG00000087396.8	ENSMUST00000130744.8	3369	9	26	-693	26	693	multi-exon	FALSE	canonical	1	1	junction_5	1.31695671910659	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATCAGTAAGCTGACC	NA	False	NA	NA	False	TATAAA	-23	NA	74808279	74768377	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_74771125_74774625_74774789_74779698_74779862_74785421_74785585_74790282_74790446_74795130_74795294_74798971_74799135_74803837_74804001_74808131
ES_00063923	chrX	-	1251	9	FSM	ENSMUSG00000073077.8	ENSMUST00000179788.2	1254	9	0	3	0	-3	multi-exon	FALSE	canonical	0	0	junction_3	0.992156741649222	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGTACCTTCATATCTAA	NA	False	NA	NA	False	TATAAA	-38	NA	78478024	78445233	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_78445351_78445626_78445722_78454041_78454235_78459090_78459214_78460414_78460497_78472141_78472364_78473426_78473656_78474722_78474870_78477981
ES_00063924	chrX	-	1274	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-75	-200	-75	200	mono-exon	FALSE	NA	NA	NA	NA	NA	939	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAACTAACCA	NA	False	NA	NA	False	AATAAA	-31	NA	79238533	79237259	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_79237300_79238500
ES_00063925	chrX	-	4064	21	FSM	ENSMUSG00000025059.17	ENSMUST00000113978.9	4279	21	0	215	0	-215	multi-exon	FALSE	canonical	3	8	junction_12	44.8534000940843	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTAGGCCTGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	84820259	84745757	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84782827_84782846_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ES_00063928	chrX	-	1175	2	Genic_Genomic	ENSMUSG00000082033.4	novel	1407	1	NA	NA	0	-55	multi-exon	FALSE	canonical	0	0	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCAAGTCTAAAGTCACAC	NA	False	NA	NA	False	AATACA	-2	NA	85344934	85343582	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_85343612_85343788
ES_00063929	chrX	-	1033	1	FSM	ENSMUSG00000083977.4	ENSMUST00000117228.2	1033	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTTAAGAGTTTTTTAT	NA	False	NA	NA	False	ATTAAA	-40	NA	85372541	85371508	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_85371500_85372500
ES_00063930	chrX	-	1771	4	Genic_Genomic	ENSMUSG00000080069.3	novel	1023	1	NA	NA	-11371	380	multi-exon	FALSE	canonical	1	1	junction_2	10.8423039781937	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTCAGATGTTT	NA	False	NA	NA	False	NA	NA	NA	85400822	85388048	ES_long_short	iso_detect_ref_jhu_pertea	Genic_Genomic_chrX_-_85389457_85398501_85398647_85400049_85400253_85400807
ES_00063931	chrX	-	506	1	FSM	ENSMUSG00000083640.2	ENSMUST00000120768.2	1122	1	516	100	516	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCGGCTTCACAGATTTC	NA	False	NA	NA	False	NA	NA	NA	87799785	87799279	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_87799300_87799800
ES_00063933	chrX	-	4008	10	NNC	ENSMUSG00000035395.12	novel	4183	12	NA	NA	-84	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	0.87488976377909	55	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTTTCTTTTAATGTG	NA	False	NA	NA	False	AAGAAA	-44	NA	88453379	88447453	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_88450288_88450379_88450515_88450602_88450690_88450915_88451066_88451763_88451836_88452081_88452154_88452379_88452547_88452655_88452806_88452945_88453058_88453150
ES_00063934	chrX	-	312	1	FSM	ENSMUSG00000100506.2	ENSMUST00000188967.2	250	1	21	-83	21	83	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTTATTCATTATATG	NA	False	NA	NA	False	NA	NA	NA	88927223	88926911	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_88926900_88927200
ES_00063936	chrX	-	7191	9	NNC	ENSMUSG00000079509.11	novel	7002	9	NA	NA	446	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	37.8200922130023	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACCCTAGTGGAGTGTTG	NA	False	NA	-5	True	AATAAA	-18	NA	93166060	93118240	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93157801_93157870_93165527
ES_00063937	chrX	-	1245	1	FSM	ENSMUSG00000087522.4	ENSMUST00000142240.2	1245	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGCGCTGGACCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	94042289	94041044	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94041000_94042300
ES_00063938	chrX	-	4126	10	FSM	ENSMUSG00000057421.13	ENSMUST00000126605.8	4126	10	0	0	0	0	multi-exon	FALSE	canonical	3	815	junction_3	60.6666666666667	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGGAGAATGAGGAAG	NA	False	NA	2	True	NA	NA	NA	95000492	94984296	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_94984555_94990016_94990165_94990472_94990680_94991375_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
ES_00063941	chrX	-	2255	13	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	21060	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	539.377489694267	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATTCAGGAAGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	100128978	100101755	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100101781_100122828_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125638_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ES_00063944	chrX	-	710	3	NIC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	83	-5	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	95.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACATTTTTCTCAGCTAG	NA	False	NA	-16	True	NA	NA	NA	100266072	100141396	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_100141834_100145973_100146042_100265867
ES_00063945	chrX	-	5439	26	NNC	ENSMUSG00000031310.17	novel	6057	25	NA	NA	0	30260	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	31.018033464422	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACACCAAAGAAAACTATA	NA	False	NA	NA	False	NA	NA	NA	100463822	100417729	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100417760_100447991_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463764
ES_00063946	chrX	-	5458	26	NNC	ENSMUSG00000031310.17	novel	6057	25	NA	NA	-6	30260	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.4578249425312	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACACCAAAGAAAACTATA	NA	False	NA	NA	False	NA	NA	NA	100463828	100417729	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_100417760_100447991_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463751
ES_00063947	chrX	-	5176	24	FSM	ENSMUSG00000031310.17	ENSMUST00000117901.8	5178	24	0	2	0	-2	multi-exon	FALSE	canonical	3	8	junction_2	34.4771368861147	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTGCTTTCTCTGGGG	NA	False	NA	-4	True	AATAAA	-12	NA	100463404	100447991	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100449410_100449510_100449626_100452082_100452198_100452759_100452912_100453238_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ES_00063948	chrX	-	2905	1	FSM	ENSMUSG00000084197.2	ENSMUST00000122027.2	526	1	-86	-2293	-86	2293	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGACTAGATAAGCCT	NA	False	NA	NA	False	NA	NA	NA	100753253	100750348	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_100750300_100753300
ES_00063949	chrX	-	586	5	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	420	junction_1	6165.39655557532	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	101232942	101228547	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_101228738_101230960_101231059_101231427_101231609_101231899_101231978_101232903
ES_00063950	chrX	-	784	2	FSM	ENSMUSG00000031320.10	ENSMUST00000152739.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAATCTCTGTTGGGCT	NA	False	NA	NA	False	TTTAAA	-40	NA	101232942	101231232	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_101231978_101232903
ES_00063951	chrX	-	1600	9	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_7	59.1116528275094	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898207	101891244	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897735_101897930_101898030
ES_00063954	chrX	-	1446	5	NNC	ENSMUSG00000031325.16	novel	800	5	NA	NA	-33	1330	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	8.16624148553054	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGTTTAAAAGAAACATAG	NA	False	NA	NA	False	NA	NA	NA	102296686	102272303	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_102273138_102273633_102273781_102276407_102276548_102277627_102277876_102296609
ES_00063956	chrX	-	11476	3	FSM	ENSMUSG00000046449.16	ENSMUST00000118314.8	11476	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	11.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGCTTTAGAATCATATG	NA	False	NA	-11	True	AATAAA	-19	NA	103244791	103121039	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_103131837_103132486_103132613_103244238
ES_00063957	chrX	-	10059	35	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_34	46.7994414097324	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104972181	104841220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972093
ES_00063959	chrX	-	10472	37	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_34	65.7101285012769	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104972951	104841220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972705
ES_00063960	chrX	-	10244	34	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_29	50.9618233388144	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104972951	104841220	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
ES_00063962	chrX	-	5064	13	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	70.8141150399332	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGATTGTTTTCCTTT	NA	False	NA	-6	True	AATAAA	-18	NA	104972956	104895042	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
ES_00063963	chrX	-	5170	14	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	69	junction_13	54.6632509636699	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCCCTGATTGTTTTCC	NA	False	NA	-9	True	AATAAA	-15	NA	104972951	104895045	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
ES_00063964	chrX	-	6408	9	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	1	103	combination_of_known_junctions	FALSE	canonical	3	29	junction_8	77.9654370538638	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTCTTCCTGAAATTA	NA	False	NA	NA	False	AATAAA	-32	NA	104972951	104909048	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104972564
ES_00063966	chrX	-	9532	10	FSM	ENSMUSG00000034551.13	ENSMUST00000113422.9	9534	10	0	2	0	0	multi-exon	FALSE	canonical	1	1	junction_9	3.2659863237109	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCTCTTTTAAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	110606776	110479629	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_110487096_110492491_110492615_110498891_110498976_110502657_110502738_110510314_110510523_110531997_110532145_110559533_110559588_110569330_110570441_110581039_110581187_110606663
ES_00063968	chrX	-	5268	2	Intergenic	novelGene_4469	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	140	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAGAATGTAGCCAA	NA	False	NA	NA	False	NA	NA	NA	122313903	122307205	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_122310672_122312101
ES_00063969	chrX	-	256	1	FSM	ENSMUSG00000096831.2	ENSMUST00000179239.2	399	1	168	-25	168	25	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAGAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	123259652	123259396	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_123259400_123259700
ES_00063970	chrX	-	569	1	FSM	ENSMUSG00000094238.2	ENSMUST00000178427.2	399	1	-139	-31	-139	31	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAGAAAGATT	NA	False	NA	NA	False	AATAAA	-31	NA	123380193	123379624	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_123379600_123380200
ES_00063971	chrX	-	496	1	FSM	ENSMUSG00000093990.2	ENSMUST00000179020.2	399	1	-66	-31	-66	31	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAGAAAGATT	NA	False	NA	NA	False	AATAAA	-31	NA	123509525	123509029	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_123509000_123509500
ES_00063972	chrX	-	311	1	FSM	ENSMUSG00000096135.2	ENSMUST00000179420.2	399	1	103	-15	103	15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	123913162	123912851	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_123912900_123913200
ES_00063975	chrX	-	399	1	FSM	ENSMUSG00000095499.2	ENSMUST00000179356.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	124765704	124765305	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_124765300_124765700
ES_00063976	chrX	-	3711	17	FSM	ENSMUSG00000031255.15	ENSMUST00000033608.15	3753	17	29	13	0	-13	multi-exon	FALSE	canonical	0	0	junction_1	0.484122918275927	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTACATTTGAGAGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	132882532	132837146	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_132838800_132841071_132841281_132841990_132842091_132844308_132844418_132848485_132848648_132849439_132849543_132849795_132849975_132851020_132851117_132851859_132851964_132852075_132852167_132852497_132852574_132853015_132853118_132861415_132861522_132861757_132861868_132862431_132862648_132862873_132863047_132882410
ES_00063977	chrX	-	3967	12	FSM	ENSMUSG00000067369.13	ENSMUST00000128115.8	4099	12	5	127	5	-127	multi-exon	TRUE	canonical	1	13	junction_3	11.5901069241141	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGCATCCACGTGGAGA	NA	False	NA	NA	False	NA	NA	NA	133177726	133123214	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_133125455_133138891_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
ES_00063978	chrX	-	890	5	ISM	ENSMUSG00000067369.13	ENSMUST00000145066.2	3237	12	11	39391	4	1	5prime_fragment	FALSE	canonical	3	42	junction_1	5.7227615711298	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTGTCTCCGCATTG	NA	False	NA	-6	True	AGTAAA	-15	NA	133177665	133163235	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrX_-_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
ES_00063979	chrX	-	217	3	NNC	ENSMUSG00000009596.10	novel	660	6	NA	NA	-71751	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGACTTAAAAATATGCAA	NA	False	NA	NA	False	NA	NA	NA	133448990	133370613	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_133370628_133377910_133377932_133448808
ES_00063983	chrX	-	1940	4	FSM	ENSMUSG00000031422.17	ENSMUST00000166930.8	1926	4	0	-14	0	3	multi-exon	FALSE	canonical	3	36	junction_3	1454.90228766975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTTCTTTTTATGTTC	NA	False	NA	NA	False	AATAAA	-37	NA	135641904	135633687	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641694
ES_00063986	chrX	-	1203	6	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	7	285	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	11.7813411800185	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGCTGTAACTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	135939041	135904014	ES_long_short	iso_detect_ref_jhu_pertea	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938914
ES_00063987	chrX	-	1666	5	NNC	ENSMUSG00000023443.14	novel	1600	5	NA	NA	46	25478	intron_retention	FALSE	non_canonical	0	0	junction_1	21.7543099178071	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCAATAATTTTATGAG	NA	False	NA	NA	False	NA	NA	NA	136020874	135990667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_135990688_136016145_136016755_136018006_136018053_136019115_136019552_136020319
ES_00063988	chrX	-	2325	5	FSM	ENSMUSG00000031434.16	ENSMUST00000144481.8	2326	5	0	1	0	-1	multi-exon	FALSE	canonical	0	0	junction_1	23.3706546763243	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTTTTCCTGACTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	138772374	138757097	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
ES_00063991	chrX	-	1066	1	FSM	ENSMUSG00000082106.4	ENSMUST00000117991.2	1127	1	-89	150	-89	-150	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCAGACCCTACTGCGTT	NA	False	NA	NA	False	NA	NA	NA	143339422	143338356	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_143338400_143339400
ES_00063992	chrX	-	748	3	FSM	ENSMUSG00000041353.13	ENSMUST00000143526.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	129.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAGTGGCTCATTAGGT	NA	False	NA	NA	False	NA	NA	NA	149218518	149192101	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrX_-_149192597_149203337_149203438_149218365
ES_00063998	chrX	-	4381	4	NNC	ENSMUSG00000087403.10	novel	584	3	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	36.0832371053374	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTGACTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	151110491	151077819	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_151081871_151083746_151083868_151110156_151110236_151110361
ES_00064002	chrX	-	1425	5	Fusion	ENSMUSG00000055746.10_ENSMUSG00000079349.10	novel	1360	4	NA	NA	-12	0	multi-exon	TRUE	canonical	3	13	junction_1	15.0062486984589	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAATGTTAATAATCGT	NA	False	NA	NA	False	NA	NA	NA	153846153	153810479	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_-_153810592_153836399_153837456_153838390_153838480_153844474_153844576_153846086
ES_00064004	chrX	-	1077	7	NNC	ENSMUSG00000025283.16	novel	1272	7	NA	NA	0	43997	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	453.941503818376	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATCAGAAAACTAGAAACA	NA	False	NA	NA	False	NA	NA	NA	153999341	153952130	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrX_-_153952155_153996132_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ES_00064010	chrX	-	4850	1	Intergenic	novelGene_4522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTACTCTTGACAGC	NA	False	NA	NA	False	NA	NA	NA	162836972	162832122	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_162832100_162837000
ES_00064011	chrX	-	1927	4	Fusion	ENSMUSG00000087263.2_ENSMUSG00000086695.2	novel	509	3	NA	NA	34	-2681	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTGGAGAAGCCTTAGT	NA	False	NA	NA	False	NA	NA	NA	168769901	168764723	ES_long_short	iso_detect_ref_jhu_pertea	Fusion_chrX_-_168765237_168766270_168767152_168767934_168768270_168769703
ES_00064012	chrX	-	323	2	Intergenic	novelGene_4525	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	34	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGCCCGGGGACCCC	NA	False	NA	NA	False	NA	NA	NA	168805316	168802879	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_168802947_168805060
ES_00064013	chrX	-	1380	8	Intergenic	novelGene_4531	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_7	16.4639370895845	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAGTTATTCAGCGTCA	NA	False	NA	10	True	AATAAA	-28	NA	169097813	169090859	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_-_169091046_169091285_169091434_169092170_169092263_169092526_169092592_169092967_169093033_169093216_169093264_169094086_169094755_169097704
ES_00064015	chrX	+	286	1	Intergenic	novelGene_4308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGGGAACTCTTATGAG	NA	False	NA	NA	False	NA	NA	NA	13094154	13094440	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_13094200_13094400
ES_00064016	chrX	+	200	1	Intergenic	novelGene_4309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGTGGCCTTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	13118280	13118480	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_13118300_13118500
ES_00064017	chrX	+	205	1	Intergenic	novelGene_4314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGCCACACACGTGCACC	NA	False	NA	NA	False	NA	NA	NA	17654467	17654672	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_17654500_17654700
ES_00064018	chrX	+	3833	1	Intergenic	novelGene_4328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTTAAAACGATTTATTA	NA	False	NA	NA	False	NA	NA	NA	25166007	25169840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_25166000_25169800
ES_00064019	chrX	+	973	1	Intergenic	novelGene_4330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGGACCCGATTCCCGC	NA	False	NA	NA	False	NA	NA	NA	25170288	25171261	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_25170300_25171300
ES_00064020	chrX	+	805	1	Intergenic	novelGene_4334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTTTAAACCTTATT	NA	False	NA	NA	False	NA	NA	NA	27617876	27618681	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_27617900_27618700
ES_00064021	chrX	+	211	1	Intergenic	novelGene_4347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCATATTTATTAAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	36132070	36132281	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_36132100_36132300
ES_00064022	chrX	+	392	1	Intergenic	novelGene_4359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGTATATTTGTTTT	NA	False	NA	NA	False	AAGAAA	-35	NA	47099517	47099909	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_47099500_47099900
ES_00064023	chrX	+	2497	1	Intergenic	novelGene_4374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTCCAAGAGTTGATAGG	NA	False	NA	NA	False	NA	NA	NA	56422241	56424738	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_56422200_56424700
ES_00064024	chrX	+	225	1	Intergenic	novelGene_4381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCCAGAGGCTTGCTT	NA	False	NA	NA	False	AAAAAG	-19	NA	59259527	59259752	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_59259500_59259800
ES_00064026	chrX	+	203	1	Intergenic	novelGene_4395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCCATTTCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	73046999	73047202	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73047000_73047200
ES_00064027	chrX	+	211	1	Intergenic	novelGene_4397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCACTGAACTTTTAATTAA	NA	False	NA	NA	False	NA	NA	NA	73054130	73054341	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73054100_73054300
ES_00064028	chrX	+	205	1	Intergenic	novelGene_4401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAGGTCAACA	NA	False	NA	NA	False	NA	NA	NA	73400896	73401101	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_73400900_73401100
ES_00064029	chrX	+	842	1	Intergenic	novelGene_4417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	88926054	88926896	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_88926100_88926900
ES_00064030	chrX	+	201	1	Intergenic	novelGene_4419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAAGAGCCGTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	90385407	90385608	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_90385400_90385600
ES_00064031	chrX	+	217	1	Intergenic	novelGene_4420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAACAATCTTAAGATTA	NA	False	NA	NA	False	NA	NA	NA	93000175	93000392	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_93000200_93000400
ES_00064033	chrX	+	203	1	Intergenic	novelGene_4428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTTCATTCTTTTG	7363	False	NA	NA	False	NA	NA	NA	100714204	100714407	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_100714200_100714400
ES_00064034	chrX	+	215	1	Intergenic	novelGene_4433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTATCTTGATATGACTG	1016	False	NA	NA	False	NA	NA	NA	101277692	101277907	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_101277700_101277900
ES_00064036	chrX	+	470	1	Intergenic	novelGene_4452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAGGGTGTATCCCAAA	NA	False	NA	NA	False	NA	NA	NA	113238798	113239268	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_113238800_113239300
ES_00064038	chrX	+	2499	1	Intergenic	novelGene_4466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTCTAGATCCTGT	NA	False	NA	NA	False	NA	NA	NA	122058802	122061301	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122058800_122061300
ES_00064041	chrX	+	1084	1	Intergenic	novelGene_4473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCCCTCAGATACTATT	NA	False	NA	NA	False	NA	NA	NA	122750124	122751208	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122750100_122751200
ES_00064042	chrX	+	492	1	Intergenic	novelGene_4474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAATTCAGAGCACATCCT	NA	False	NA	NA	False	NA	NA	NA	122751519	122752011	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_122751500_122752000
ES_00064044	chrX	+	213	1	Intergenic	novelGene_4485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTTTGTTGGAACTCA	NA	False	NA	NA	False	NA	NA	NA	134886423	134886636	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_134886400_134886600
ES_00064046	chrX	+	219	1	Intergenic	novelGene_4501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTCCCTCCCTCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	151702854	151703073	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_+_151702900_151703100
ES_00064049	chrX_GL456233v2_random	+	2249	8	Intergenic	novelGene_4537	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	36	junction_5	6.38557046817915	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTGAGGGTTAAATTTT	NA	False	NA	NA	False	NA	NA	NA	251330	468930	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_GL456233v2_random_+_251453_354605_354788_394862_395040_409324_409605_422004_422125_460904_461142_467193_467333_467938
ES_00064050	chrX_GL456233v2_random	-	2498	8	Intergenic	novelGene_4536	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_6	123.884080115737	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCTTTAATAAGTTCTT	NA	False	NA	3	True	AATAAA	-20	NA	134134	105699	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_123935_124074_125547_125606_127454_127545_133984
ES_00064051	chrX_GL456233v2_random	-	2541	8	Intergenic	novelGene_4535	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	354	junction_1	19.1641672431246	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTTTAATAAGTTCTTA	NA	False	NA	4	True	AATAAA	-21	NA	134111	105698	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_123935_124074_125547_125606_127389_127545_133984
ES_00064052	chrX_GL456233v2_random	-	2523	8	Intergenic	novelGene_4534	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_7	117.818088767457	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTTAATAAGTTCTTAG	NA	False	NA	5	True	AATAAA	-22	NA	134130	105697	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_123935_124074_125547_125606_127389_127507_133984
ES_00064053	chrY	+	1270	1	FSM	ENSMUSG00000096438.4	ENSMUST00000180966.2	1002	1	-73	-195	-73	195	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAAATTTGAAA	NA	False	NA	NA	False	AATAAA	-29	NA	38575054	38576324	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrY_+_38575100_38576300
ES_00064054	chrY	+	3131	2	Intergenic	novelGene_4562	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTTAAGGTAAACTTTA	NA	False	NA	NA	False	NA	NA	NA	58553125	58557688	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_58554963_58556394
ES_00064057	chrY	+	3468	1	Intergenic	novelGene_4567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACCTGTTAATTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	60513194	60516662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_60513200_60516700
ES_00064058	chrY	+	601	2	Intergenic	novelGene_4575	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	9	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTAGGATGCAGGGAAT	NA	False	NA	NA	False	TTTAAA	-28	NA	90728877	90733646	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90729104_90733271
ES_00064059	chrY	+	315	2	Intergenic	novelGene_4578	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTAGGATGCAGGGAAT	NA	False	NA	NA	False	TTTAAA	-28	NA	90731091	90733646	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90731125_90733364
ES_00064060	chrY	+	289	4	Intergenic	novelGene_4582	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	1	7	junction_2	151.182009511714	382	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACCAATCTTTAAAAAAAT	68	False	NA	NA	False	NA	NA	NA	90735721	90816811	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90735776_90810812_90810869_90815129_90815219_90816721
ES_00064061	chrY	+	1303	5	NNC	ENSMUSG00000096768.9	novel	887	5	NA	NA	-566	5943	intron_retention	FALSE	canonical	3	234	junction_2	136.850968209947	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGTGTGTCTTCCTT	3386	False	NA	NA	False	AATAAA	-24	NA	90795440	90833677	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90796858_90797249_90804564_90804950_90833554
ES_00064063	chrY	+	1034	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-559	5944	intron_retention	FALSE	canonical	3	234	junction_2	693.50811098357	562	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGTGTGTCTTCCTTC	3393	False	NA	NA	False	AATAAA	-25	NA	90795447	90833678	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90796858_90797249_90804564_90804687_90833554
ES_00064064	chrY	+	776	3	ISM	ENSMUSG00000096768.9	ENSMUST00000177591.2	774	4	0	0	0	0	intron_retention	FALSE	canonical	3	607	junction_1	708	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	4656	False	NA	NA	False	AATAAA	-17	NA	90796710	90827733	ES_long_short	iso_detect_ref_jhu_pertea	ISM_chrY_+_90797249_90804564_90804687_90827617
ES_00064065	chrY	+	1788	2	NNC	ENSMUSG00000096768.9	novel	774	4	NA	NA	1296	5937	at_least_one_novel_splicesite	FALSE	canonical	3	2017	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	90803015	90833671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90804687_90833554
ES_00064066	chrY	+	245	2	Intergenic	novelGene_4586	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1065	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTTTTCAGTTCTGATT	103	False	NA	NA	False	NA	NA	NA	90812569	90819594	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90812666_90819445
ES_00064067	chrY	-	218	2	Intergenic	novelGene_4538	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	196	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATAGAGTTTTTCACAAA	3276	False	NA	NA	False	NA	NA	NA	1242483	1237373	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_1237395_1242286
ES_00064068	chrY	-	2140	1	FSM	ENSMUSG00000075359.3	ENSMUST00000100115.3	1851	1	-208	-81	-208	81	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGCAAAAGCTTCAGAG	NA	False	NA	NA	False	NA	NA	NA	10643315	10641175	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrY_-_10641200_10643300
ES_00064069	chrY	-	224	2	Intergenic	novelGene_4553	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGATGAGACTGACAAGG	NA	False	NA	NA	False	NA	NA	NA	47725637	47718662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_47718748_47725498
ES_00064070	chrY	-	224	2	Intergenic	novelGene_4554	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGATGAGACTGACAAGG	NA	False	NA	NA	False	NA	NA	NA	47725637	47718662	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_47718770_47725520
ES_00064071	chrY	-	6722	1	Intergenic	novelGene_4556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCGGAAGAAAGAATGTAG	NA	False	NA	NA	False	NA	NA	NA	47725621	47718899	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_47718900_47725600
ES_00064072	chrY	-	5236	2	Intergenic	novelGene_4558	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGAACGGTTCGACTGAG	NA	False	NA	NA	False	NA	NA	NA	47725621	47718954	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_47722343_47723773
ES_00064073	chrY	-	220	2	Intergenic	novelGene_4566	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGATGAGACTGACAAGGA	NA	False	NA	NA	False	NA	NA	NA	60519927	60512956	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_60513065_60519815
ES_00064076	chrY	-	456	2	Intergenic	novelGene_4581	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	30	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCGGACCATTATATAAACA	3519	False	NA	NA	False	NA	NA	NA	90740857	90735358	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_90735635_90740677
ES_00064077	chrY	-	628	2	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1461	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGCGTGTGGGTGACGTCG	7494	False	NA	NA	False	NA	NA	NA	90805236	90796907	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrY_-_90797324_90805024
ES_00064078	chrY	-	408	2	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCACGCCTTCTATCCCAG	1020	False	NA	NA	False	AATAGA	-25	NA	90811710	90805315	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrY_-_90805664_90811650
ES_00064080	chrY	-	595	4	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	111.722871427475	1	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAATAAATGCCAAATGC	6469	False	NA	NA	False	ATTAAA	-20	NA	90822260	90812569	ES_long_short	iso_detect_ref_jhu_pertea	Antisense_chrY_-_90812729_90814196_90814284_90815404_90815513_90822019
ES_00064081	chrY	+	402	1	Intergenic	novelGene_4539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTGTGGACAAGAAATG	3	False	NA	NA	False	NA	NA	NA	3934676	3935078	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_3934700_3935100
ES_00064082	chrY	+	911	1	Intergenic	novelGene_4540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAAGTTTATGTACCTT	4062	False	NA	NA	False	NA	NA	NA	3938735	3939646	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_3938700_3939600
ES_00064083	chrY	+	1580	1	Intergenic	novelGene_4541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTCTGGGGCTGCCCAGA	NA	False	NA	NA	False	NA	NA	NA	4388602	4390182	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_4388600_4390200
ES_00064084	chrY	+	525	1	Intergenic	novelGene_4543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTTTATGCCACGTGTC	NA	False	NA	NA	False	NA	NA	NA	4390382	4390907	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_4390400_4390900
ES_00064085	chrY	+	471	1	Intergenic	novelGene_4548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAAGTGTTTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	40062156	40062627	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_40062200_40062600
ES_00064086	chrY	+	434	1	Intergenic	novelGene_4549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTACGGGCAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	40062944	40063378	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_40062900_40063400
ES_00064087	chrY	+	919	1	Intergenic	novelGene_4550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTTAACTTCTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	40063611	40064530	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_40063600_40064500
ES_00064088	chrY	+	1807	1	Intergenic	novelGene_4551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGCAAAGCATAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	43879915	43881722	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_43879900_43881700
ES_00064089	chrY	+	644	1	Intergenic	novelGene_4571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCTTGCATTGACTCAA	NA	False	NA	NA	False	NA	NA	NA	89942070	89942714	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_89942100_89942700
ES_00064090	chrY	+	638	1	Intergenic	novelGene_4572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACCTATCAGAGAATAAT	NA	False	NA	NA	False	NA	NA	NA	89942955	89943593	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_89943000_89943600
ES_00064091	chrY	+	710	1	Intergenic	novelGene_4574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGGGCAATAGAAATTC	NA	False	NA	NA	False	NA	NA	NA	90389566	90390276	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90389600_90390300
ES_00064092	chrY	+	3987	1	Intergenic	novelGene_4557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTACTATTTTTACTGA	NA	False	NA	NA	False	NA	NA	NA	47718900	47722887	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_47718900_47722900
ES_00064093	chrY	+	5116	3	Intergenic	novelGene_4559	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	47718996	47725616	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_47719290_47719357_47722351_47723786
ES_00064094	chrY	+	3027	2	Intergenic	novelGene_4563	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAACTTTTGTAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	58553131	58557615	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_58554943_58556399
ES_00064097	chrY	+	301	3	Intergenic	novelGene_4577	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	81	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCACCATTTAAATGAGG	NA	False	NA	NA	False	NA	NA	NA	90729881	90742488	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90730031_90737271_90737332_90742396
ES_00064098	chrY	+	237	2	Intergenic	novelGene_4579	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	3	2153	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGCGATTTTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	90731722	90816479	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90731812_90816331
ES_00064099	chrY	+	209	1	Intergenic	novelGene_4580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGGAATCAGGGAATCTG	NA	False	NA	NA	False	TTTAAA	-31	NA	90733254	90733463	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90733300_90733500
ES_00064100	chrY	+	1779	4	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	-24842	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	191.390235441159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACGCCAACGGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	90771164	90827667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90771349_90803327_90804075_90804151_90804950_90827617
ES_00064101	chrY	+	1470	4	NNC	ENSMUSG00000096768.9	novel	1272	3	NA	NA	-565	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	860.630130905386	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACGCCAACGGGGCCTG	3387	False	NA	NA	False	NA	NA	NA	90795441	90827667	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90796483_90804205_90804687_90827617
ES_00064102	chrY	+	984	4	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	-562	5937	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	232.210153859722	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	3390	False	NA	NA	False	AATAAA	-18	NA	90795444	90833671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90804564_90805031_90833554
ES_00064103	chrY	+	1021	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-553	0	intron_retention	FALSE	canonical	3	234	junction_2	696.056211810512	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	3399	False	NA	NA	False	AATAAA	-18	NA	90795453	90827734	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90796858_90797249_90804564_90804687_90827617
ES_00064104	chrY	+	757	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-549	5937	intron_retention	FALSE	canonical	3	68	junction_3	773.272388941956	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	3403	False	NA	NA	False	AATAAA	-18	NA	90795457	90833671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90796858_90796989_90804564_90804687_90833554
ES_00064105	chrY	+	1020	5	NNC	ENSMUSG00000096768.9	novel	887	5	NA	NA	-549	5937	intron_retention	FALSE	canonical	3	68	junction_3	164.465801916386	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	3403	False	NA	NA	False	AATAAA	-18	NA	90795457	90833671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90796858_90796989_90804564_90804950_90833554
ES_00064106	chrY	+	1361	5	NNC	ENSMUSG00000096768.9	novel	887	5	NA	NA	-549	5937	intron_retention	FALSE	canonical	0	0	junction_4	236.103128950042	1	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	3403	False	NA	NA	False	AATAAA	-18	NA	90795457	90833671	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90795948_90796858_90797249_90804564_90805031_90833554
ES_00064109	chrY	+	1218	4	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	1968	0	intron_retention	FALSE	non_canonical	0	0	junction_1	953.651345560257	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	7030	False	NA	NA	False	AATAAA	-17	NA	90799084	90827733	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90799276_90802823_90803200_90804151_90804687_90827617
ES_00064110	chrY	+	3347	2	FSM	ENSMUSG00000096768.9	ENSMUST00000238471.2	3347	2	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	9665	False	NA	NA	False	AATAAA	-18	NA	90801719	90827734	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrY_+_90804950_90827617
ES_00064111	chrY	+	215	1	Intergenic	novelGene_4587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGACTTAGACACAGAGAC	NA	False	NA	NA	False	NA	NA	NA	90836285	90836500	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90836300_90836500
ES_00064112	chrY	-	209	2	Intergenic	novelGene_4547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATACAAGGACAGGAACAA	NA	False	NA	NA	False	NA	NA	NA	21876139	21801222	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_21801239_21875946
ES_00064113	chrY	-	3850	1	Intergenic	novelGene_4552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTTTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	43883766	43879916	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_43879900_43883800
ES_00064114	chrY	-	3288	2	Intergenic	novelGene_4565	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAACGGTTTCCGTGTCG	NA	False	NA	NA	False	NA	NA	NA	60223796	60220441	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_60221994_60222060
ES_00064115	chrY	-	246	2	Intergenic	novelGene_4576	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	844	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGAAACCTGCACGAGTT	7025	False	NA	NA	False	AAGAAA	-39	NA	90737351	90729864	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_90729987_90737227
ES_00064116	chrY	+	283	1	Intergenic	novelGene_4542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGGAAAGCAAAACCCAAG	NA	False	NA	NA	False	NA	NA	NA	4390382	4390665	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_4390400_4390700
ES_00064117	chrY	+	827	1	Intergenic	novelGene_4544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCTTAAATTCAAAGAGT	1020	False	NA	NA	False	NA	NA	NA	12440726	12441553	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_12440700_12441600
ES_00064118	chrY	+	685	1	Intergenic	novelGene_4545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGAGTCTAGCTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	15715155	15715840	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_15715200_15715800
ES_00064119	chrY	+	836	1	Intergenic	novelGene_4546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTTTGCTTCTAGTGA	1025	False	NA	NA	False	NA	NA	NA	17152629	17153465	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_17152600_17153500
ES_00064121	chrY	+	1079	1	Intergenic	novelGene_4573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	250	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTATTAACTGGGGCAAT	NA	False	NA	NA	False	NA	NA	NA	89942955	89944034	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_89943000_89944000
ES_00064122	chrY	+	424	1	Intergenic	novelGene_4584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCAGATTCGACCCCACG	NA	False	NA	NA	False	NA	NA	NA	90752984	90753408	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90753000_90753400
ES_00064123	chrY	+	200	1	Intergenic	novelGene_4585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTTTCATTTAAGACTA	4407	False	NA	NA	False	NA	NA	NA	90808955	90809155	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90809000_90809200
ES_00064125	chrY	+	3325	2	Intergenic	novelGene_4560	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTC	NA	False	NA	NA	False	NA	NA	NA	47720862	47725618	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_47722339_47723769
ES_00064126	chrY	+	5214	3	Intergenic	novelGene_4568	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTC	NA	False	NA	NA	False	NA	NA	NA	60513195	60519913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_60513585_60513652_60516646_60518081
ES_00064127	chrY	+	5226	2	Intergenic	novelGene_4570	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTC	NA	False	NA	NA	False	NA	NA	NA	60513251	60519913	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_60516646_60518081
ES_00064128	chrY	+	1654	6	NNC	ENSMUSG00000096768.9	novel	887	5	NA	NA	-566	5946	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	207.234746121397	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTCTTCCTTCTG	3386	False	NA	NA	False	AATAAA	-27	NA	90795440	90833680	ES_long_short	iso_detect_ref_jhu_pertea	NNC_chrY_+_90795676_90795777_90796493_90796669_90796963_90804668_90804950_90827617_90827636_90833568
ES_00064129	chrY	+	895	3	FSM	ENSMUSG00000096768.9	ENSMUST00000238238.2	567	3	-262	-66	0	0	multi-exon	FALSE	canonical	3	406	junction_2	100.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	4800	False	NA	NA	False	AATAAA	-17	NA	90796854	90827733	ES_long_short	iso_detect_ref_jhu_pertea	FSM_chrY_+_90797249_90804564_90804950_90827617
ES_00064131	chrY	-	2338	1	Intergenic	novelGene_4555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGAAAGGTGCACGGGTG	NA	False	NA	NA	False	NA	NA	NA	47721116	47718778	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_47718800_47721100
ES_00064132	chrY	-	2495	2	Intergenic	novelGene_4561	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCTAAACTTTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	47725621	47721661	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_47722343_47723807
ES_00064133	chrY	-	3765	2	Intergenic	novelGene_4564	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	58558332	58553132	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_58554981_58556415
ES_00064134	chrY	-	5283	2	Intergenic	novelGene_4569	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGCGGAAGAAAGAATGTA	NA	False	NA	NA	False	NA	NA	NA	60519917	60513195	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_-_60516638_60518076
ES_00064142	chrY	+	667	1	Intergenic	novelGene_4583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTCGGGTCCCAGATTCG	NA	False	NA	NA	False	NA	NA	NA	90752733	90753400	ES_long_short	iso_detect_ref_jhu_pertea	Intergenic_chrY_+_90752700_90753400
